BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036003
         (558 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  890 bits (2300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/554 (74%), Positives = 484/554 (87%), Gaps = 2/554 (0%)

Query: 5   PSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCT 64
           P+PP+T   PP   +NT + LSLLP+CTS R LKQ+ A  IKTHL +DL+VLTK INFC+
Sbjct: 4   PAPPVTPMCPPNSNSNTTHPLSLLPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCS 63

Query: 65  QNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYS 124
            NPTT+SM+HAH LFD+IP+PDIVLFNTMARGY+R+ TP+RA  LF ++L SGL PDDY+
Sbjct: 64  LNPTTTSMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYT 123

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
           FPSLLKACA    +ALEEG+QLHC AIKLGL+ N+YVC TLIN+Y  C++++ ARR+F+ 
Sbjct: 124 FPSLLKACA--SCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDK 181

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
           I EPCVV+YNA+IT YAR SRPNEALSLFRELQ RNLKPTDVTMLS LSSCALLG+LDLG
Sbjct: 182 IWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLG 241

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
           KW+HEY+KK G +++VKV+TALIDM+AKCG LDDAV VF+NM+ +DTQAWSAMI+AYA H
Sbjct: 242 KWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIH 301

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364
           G G K++ +F+EM KA   PDEITFLGLLYACSHTGLV+EG+ YFY MRDKYG++PGIKH
Sbjct: 302 GHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKH 361

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
           YGCMVDLLGRAGRL+EAY FI  LPI+ TPILWRTLLS+C SH N+ L K+VIE+IFELD
Sbjct: 362 YGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELD 421

Query: 425 DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVH 484
           DSHGGDY+ILSNLCARAGRWEDV+Y+RKLM +RGV+K+PGCSS+EVNNVV EFFSGDGVH
Sbjct: 422 DSHGGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVH 481

Query: 485 SYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTP 544
           S ST L +ALDELVKELK+VGYVP+TSLV H DMEDEEKE+ LRYHSEKLAITFGLLNTP
Sbjct: 482 SVSTKLHQALDELVKELKLVGYVPNTSLVFHADMEDEEKEVTLRYHSEKLAITFGLLNTP 541

Query: 545 PGTTIRVVKNLRVC 558
           PGTTIRVVKNLRVC
Sbjct: 542 PGTTIRVVKNLRVC 555


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  885 bits (2288), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/563 (76%), Positives = 481/563 (85%), Gaps = 7/563 (1%)

Query: 1   MATTPSPPITQSPPPK----LCTNTPNAL-SLLPRCTSFRGLKQIHAVTIKTHLQNDLNV 55
           MAT P PP+ Q  P +      T  P++L S LP+CTS + LKQI A +IKTHLQNDL +
Sbjct: 1   MATAPFPPVIQQSPSQHSSYYNTTYPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQI 60

Query: 56  LTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN 115
           LTKLIN CTQNPTT+SM++AH LF+ IP+PDIVLFN+M RGYSRS  P++AI LF++ LN
Sbjct: 61  LTKLINSCTQNPTTASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALN 120

Query: 116 SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDV 175
             LLPDDY+FPSLLKAC  V A+A ++GKQLHC AIKLGLN N YVC TLIN+YA C+DV
Sbjct: 121 YNLLPDDYTFPSLLKAC--VVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDV 178

Query: 176 EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSC 235
           + A+R+F+ I EPCVVSYNAIIT YARSSRPNEALSLFR+LQ R LKP DVT+LS LSSC
Sbjct: 179 DGAQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSC 238

Query: 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWS 295
           ALLG+LDLGKWIHEY+KK GLDKYVKVNTALIDM+AKCG LD A+SVF++MS +DTQAWS
Sbjct: 239 ALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWS 298

Query: 296 AMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355
           AMIVAYA HGQG   + MFEEM +A+V PDEITFLGLLYACSHTGLVDEG+ YFYSM + 
Sbjct: 299 AMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEV 358

Query: 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQ 415
           YGI+PGIKHYGCMVDLLGRAG L EAY+FIDELPIK TPILWRTLLSSCSSH NL LAKQ
Sbjct: 359 YGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQ 418

Query: 416 VIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVR 475
           V+ +I ELDDSHGGDYVILSNLCARAG+WEDVD LRKLM  +G +K+PGCSSIEV+NVV 
Sbjct: 419 VMNQILELDDSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVH 478

Query: 476 EFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLA 535
           EFFSGDGVH  ST L +ALDELVKELK VGYVPDTSLV H DMEDEEKEI LRYHSEKLA
Sbjct: 479 EFFSGDGVHYVSTALHRALDELVKELKSVGYVPDTSLVVHPDMEDEEKEITLRYHSEKLA 538

Query: 536 ITFGLLNTPPGTTIRVVKNLRVC 558
           I+FGLLNTPPGTTIRVVKNLRVC
Sbjct: 539 ISFGLLNTPPGTTIRVVKNLRVC 561


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  858 bits (2217), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/572 (73%), Positives = 477/572 (83%), Gaps = 17/572 (2%)

Query: 1   MATTPSPPITQSPPPKLCTNTP--------------NALSLLPRCTSFRGLKQIHAVTIK 46
           MATTP          KL T  P              + LSL+P+CTS R LKQI A TIK
Sbjct: 1   MATTPILQCVSHSLTKLNTEAPRHEPNTAALEPPSSSILSLIPKCTSLRELKQIQAYTIK 60

Query: 47  THLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRA 106
           TH QN+  VLTKLINFCT NPT +SM+HAH +FD+IP+PDIVLFNTMARGY+R   P+RA
Sbjct: 61  TH-QNNPTVLTKLINFCTSNPTIASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRA 119

Query: 107 IFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI 166
           I L  ++L SGLLPDDY+F SLLKACA +  +ALEEGKQLHC A+KLG+  N+YVC TLI
Sbjct: 120 ILLCSQVLCSGLLPDDYTFSSLLKACARL--KALEEGKQLHCLAVKLGVGDNMYVCPTLI 177

Query: 167 NLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV 226
           N+Y  C+DV+AARR+F+ I EPCVV+YNAIIT+ AR+SRPNEAL+LFRELQE  LKPTDV
Sbjct: 178 NMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDV 237

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
           TML ALSSCALLG+LDLG+WIHEY+KK G D+YVKVNTALIDM+AKCG LDDAVSVF +M
Sbjct: 238 TMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDM 297

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
             +DTQAWSAMIVAYATHG G ++I M  EM KA+V PDEITFLG+LYACSHTGLV+EG+
Sbjct: 298 PRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGY 357

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
            YF+SM  +YGIVP IKHYGCM+DLLGRAGRL+EA +FIDELPIK TPILWRTLLSSCSS
Sbjct: 358 EYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSS 417

Query: 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCS 466
           H N+ +AK VI+RIFELDDSHGGDYVILSNLCAR GRW+DV++LRK+M D+G LKVPGCS
Sbjct: 418 HGNVEMAKLVIQRIFELDDSHGGDYVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCS 477

Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
           SIEVNNVV EFFSGDGVHS ST L  ALDELVKELK+ GYVPDTSLV + D+EDEEKEI 
Sbjct: 478 SIEVNNVVHEFFSGDGVHSTSTILHHALDELVKELKLAGYVPDTSLVFYADIEDEEKEIV 537

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           LRYHSEKLAIT+GLLNTPPGTTIRVVKNLRVC
Sbjct: 538 LRYHSEKLAITYGLLNTPPGTTIRVVKNLRVC 569


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  838 bits (2164), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/556 (71%), Positives = 468/556 (84%), Gaps = 5/556 (0%)

Query: 3   TTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINF 62
           T PS   +++   +   N  + LSLL +CTS   LKQI A TIKT+LQ+D++VLTKLINF
Sbjct: 14  TKPSSAFSKN---EFVINQLHPLSLLSKCTSLNELKQIQAYTIKTNLQSDISVLTKLINF 70

Query: 63  CTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDD 122
           CT NPTTS M+HAH LFD+I + DI+LFN MARGY+RS +P  A  LF ELL SGLLPDD
Sbjct: 71  CTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDD 130

Query: 123 YSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF 182
           Y+F SLLKACA   ++AL EG  LHCFA+KLGLN N+Y+C TLIN+YAEC+D+ AAR +F
Sbjct: 131 YTFSSLLKACA--SSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVF 188

Query: 183 ENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242
           + + +PC+VSYNAIIT YARSS+PNEALSLFRELQ  N++PTDVTMLS + SCALLG+LD
Sbjct: 189 DEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALD 248

Query: 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYA 302
           LGKWIHEY+KK G DKYVKVNTALIDM AKCG L DA+S+F+ M  +DTQAWSAMIVA+A
Sbjct: 249 LGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFA 308

Query: 303 THGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI 362
           THG G K+I MFEEM +  V PDEITFLGLLYACSH GLV++G  YFYSM   YGI PGI
Sbjct: 309 THGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGI 368

Query: 363 KHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
           KHYGCMVDLLGRAG LDEAY F+D+L IK+TPILWRTLLS+CS+H N+ +AK+VIERIFE
Sbjct: 369 KHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFE 428

Query: 423 LDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDG 482
           LDD+HGGDYVILSNL AR GRWEDV++LRKLMKDRGV+KVPGCSS+EVNNVV EFFSGDG
Sbjct: 429 LDDAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDG 488

Query: 483 VHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLN 542
           VH  S +L++ALDEL+KE+K+VGYVPDTSLV+H DME+E KE+ LRYHSEKLA+ FGLLN
Sbjct: 489 VHCVSVELRRALDELMKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLN 548

Query: 543 TPPGTTIRVVKNLRVC 558
           TPPGTTIRV KNLR+C
Sbjct: 549 TPPGTTIRVAKNLRIC 564


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/537 (69%), Positives = 440/537 (81%), Gaps = 17/537 (3%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           P+ +SL+P+CT+ + LKQI A TIKT+ QN+ NV+TK INFCT NPT +SMEHAH LFD+
Sbjct: 27  PHLISLIPKCTTLKELKQIQAYTIKTNYQNNTNVITKFINFCTSNPTKASMEHAHQLFDQ 86

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           I +P+IVLFNTMARGY+R   P+R I  F   L                       +AL 
Sbjct: 87  ITQPNIVLFNTMARGYARLNDPLRMITHFRRCLR-----------------LVSKVKALA 129

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           EGKQLHCFA+KLG++ N+YV  TLIN+Y  C D++A+RR+F+ I EPCVV+YNAII + A
Sbjct: 130 EGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLA 189

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           R++R NEAL+LFRELQE  LKPTDVTML  LSSCALLGSLDLG+W+HEY+KKYG D+YVK
Sbjct: 190 RNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVK 249

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           VNT LIDM+AKCG LDDAV+VF +M  +DTQAWSA+IVAYATHG G ++I M  EM K +
Sbjct: 250 VNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEK 309

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           V PDEITFLG+LYACSH GLV+EG+ YF+ M ++YGIVP IKHYGCMVDLLGRAGRLDEA
Sbjct: 310 VQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEA 369

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
           Y+FIDELPIK TPILWRTLLS+CS+H N+ + K+VIERIFELDDSHGGDYVI SNLCAR 
Sbjct: 370 YKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELDDSHGGDYVIFSNLCARY 429

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           G+W+DV++LRK M D+G +K+PGCSSIEVNNVV EFF+G+GVHS ST L +ALDELVKEL
Sbjct: 430 GKWDDVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAGEGVHSTSTTLHRALDELVKEL 489

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K  GYVPDTSLV + DMEDEEKEI LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC
Sbjct: 490 KSAGYVPDTSLVFYADMEDEEKEIILRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 546



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 181/353 (51%), Gaps = 13/353 (3%)

Query: 14  PPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSME 73
           P ++ T+    L L+ +  +    KQ+H   +K  + +++ V+  LIN  T       ++
Sbjct: 108 PLRMITHFRRCLRLVSKVKALAEGKQLHCFAVKLGVSDNMYVVPTLINMYT---ACGDID 164

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
            +  +FD+I EP +V +N +    +R+     A+ LF EL   GL P D +   +L +CA
Sbjct: 165 ASRRVFDKIDEPCVVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCA 224

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
            +G  +L+ G+ +H +  K G +  + V TTLI++YA+C  ++ A  +F ++ +    ++
Sbjct: 225 LLG--SLDLGRWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAW 282

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEYIK 252
           +AII AYA      +A+S+  E+++  ++P ++T L  L +C+  G ++ G ++ H    
Sbjct: 283 SAIIVAYATHGDGFQAISMLNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTN 342

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA-WSAMIVAYATHGQGHKSI 311
           +YG+   +K    ++D+  + GRLD+A    D +  K T   W  ++ A +THG      
Sbjct: 343 EYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGK 402

Query: 312 LMFEEMMKAQVS--PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGI-VPG 361
            + E + +   S   D + F  L   C+  G  D+  +   +M DK  + +PG
Sbjct: 403 RVIERIFELDDSHGGDYVIFSNL---CARYGKWDDVNHLRKTMIDKGAVKIPG 452


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/552 (69%), Positives = 446/552 (80%), Gaps = 6/552 (1%)

Query: 10  TQSPPPKLCT---NTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQN 66
           T + P K+ T   N PN + L+ +C S R L QI A  IK+H Q D++  TKLINFCT++
Sbjct: 17  TFTKPLKIDTVNPNPPNPILLISKCNSERELMQIQAYAIKSH-QEDVSFNTKLINFCTES 75

Query: 67  PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFP 126
           PT SSM +A  LFD + EPDIV+FN++ARGYSRS  P+    LFVE+L   LLPD+Y+FP
Sbjct: 76  PTESSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFP 135

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS 186
           SLLKACA   A+ALEEG+QLHC ++KLG++ N+YVC TLIN+Y EC DV+AAR +F+ I 
Sbjct: 136 SLLKACAV--AKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIV 193

Query: 187 EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW 246
           EPCVV YNA+IT YAR +RPNEALSLFRE+Q +NLKP ++T+LS LSSCALLGSLDLGKW
Sbjct: 194 EPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKW 253

Query: 247 IHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ 306
           IHEY KK+G  KYVKVNTALIDM AKCG LDDAVS+F+NM  KDTQAWSAMIVAYA HGQ
Sbjct: 254 IHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQ 313

Query: 307 GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG 366
              S+LMFE M    V PDEITFLGLL ACSHTGLV+EG  YF  M  ++GIVP IKHYG
Sbjct: 314 AENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYG 373

Query: 367 CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
            MVDLLGRAG L++AY FID+LPI  TP+LWR LL++CSSHNNL LA++V ERI ELDDS
Sbjct: 374 SMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERILELDDS 433

Query: 427 HGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSY 486
           HGGDYVILSNL AR  +WE VD LRK+MKDR  +KVPGCSSIEVNNVV EFFSGDGV S 
Sbjct: 434 HGGDYVILSNLYARNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSA 493

Query: 487 STDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPG 546
           +T L +ALDE+VKELK+ GYVPDTS+V H DM D+EKEI LRYHSEKLAI FGLLNTPPG
Sbjct: 494 TTKLHRALDEMVKELKLAGYVPDTSMVVHADMGDQEKEITLRYHSEKLAIAFGLLNTPPG 553

Query: 547 TTIRVVKNLRVC 558
           TTIRVVKNLRVC
Sbjct: 554 TTIRVVKNLRVC 565


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  780 bits (2014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/540 (69%), Positives = 439/540 (81%), Gaps = 3/540 (0%)

Query: 19  TNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLL 78
            NT N + L+ +C S R L QI A  IK+H++ D++ + KLINFCT++PT SSM +A  L
Sbjct: 27  VNTQNPILLISKCNSLRELMQIQAYAIKSHIE-DVSFVAKLINFCTESPTESSMSYARHL 85

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
           F+ + EPDIV+FN+MARGYSR   P+    LFVE+L  G+LPD+Y+FPSLLKACA   A+
Sbjct: 86  FEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV--AK 143

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
           ALEEG+QLHC ++KLGL+ N+YVC TLIN+Y EC DV++AR +F+ I EPCVV YNA+IT
Sbjct: 144 ALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMIT 203

Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
            YAR +RPNEALSLFRE+Q + LKP ++T+LS LSSCALLGSLDLGKWIH+Y KK+   K
Sbjct: 204 GYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCK 263

Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
           YVKVNTALIDM AKCG LDDAVS+F+ M  KDTQAWSAMIVAYA HG+  KS+LMFE M 
Sbjct: 264 YVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMR 323

Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
              V PDEITFLGLL ACSHTG V+EG  YF  M  K+GIVP IKHYG MVDLL RAG L
Sbjct: 324 SENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNL 383

Query: 379 DEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438
           ++AY FID+LPI  TP+LWR LL++CSSHNNL LA++V ERIFELDDSHGGDYVILSNL 
Sbjct: 384 EDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLY 443

Query: 439 ARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELV 498
           AR  +WE VD LRK+MKDR  +KVPGCSSIEVNNVV EFFSGDGV S +T L +ALDE+V
Sbjct: 444 ARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMV 503

Query: 499 KELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           KELK+ GYVPDTS+V H +M D+EKEI LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC
Sbjct: 504 KELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 563


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/540 (69%), Positives = 438/540 (81%), Gaps = 3/540 (0%)

Query: 19  TNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLL 78
            NT N + L+ +C S R L QI A  IK+H++ D++ + KLINFCT++PT SSM +A  L
Sbjct: 27  VNTQNPILLISKCNSLRELMQIQAYAIKSHIE-DVSFVAKLINFCTESPTESSMSYARHL 85

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
           F+ + EPDIV+FN+MARGYSR   P+    LFVE+L  G+LPD+Y+FPSLLKACA   A+
Sbjct: 86  FEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV--AK 143

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
           ALEEG+QLHC ++KLGL+ N+YVC TLIN+Y EC DV++AR +F+ I EPCVV YNA+IT
Sbjct: 144 ALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMIT 203

Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
            YAR +RPNEALSLFRE+Q + LKP ++T+LS LSSCALLGSLDLGKWIH+Y KK+   K
Sbjct: 204 GYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCK 263

Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
           YVKVNTALIDM AKCG LDDAVS+F+ M  KDTQAWSAMIVAYA HG+  KS+LMFE M 
Sbjct: 264 YVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMR 323

Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
              V PDEITFLGLL ACSHTG V+EG  YF  M  K+GIVP IKHYG MVDLL  AG L
Sbjct: 324 SENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNL 383

Query: 379 DEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438
           ++AY FID+LPI  TP+LWR LL++CSSHNNL LA++V ERIFELDDSHGGDYVILSNL 
Sbjct: 384 EDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLY 443

Query: 439 ARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELV 498
           AR  +WE VD LRK+MKDR  +KVPGCSSIEVNNVV EFFSGDGV S +T L +ALDE+V
Sbjct: 444 ARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMV 503

Query: 499 KELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           KELK+ GYVPDTS+V H +M D+EKEI LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC
Sbjct: 504 KELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 563


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/572 (56%), Positives = 419/572 (73%), Gaps = 22/572 (3%)

Query: 6   SPPITQSPPPKLCTNTPNA----------LSLLPRCTSFRGLKQIHAVTIKTH--LQNDL 53
           S P+T +P P L   + N           L+ LP CTS R L Q+HAV +K    LQ   
Sbjct: 3   SSPLTATPSPLLPAKSKNPPPHHHHHNPLLAYLPHCTSLRALAQLHAVAVKAGGGLQAHP 62

Query: 54  NVLTKLINFCTQN--PTTSSMEHAHLLFDRIPEP-DIVLFNTMARGYSRSKTPI----RA 106
             +T+L+  CT+      + + +A  +FDRIP P D+V +NT+ RGY+R          A
Sbjct: 63  AFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEA 122

Query: 107 IFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI 166
             +FV ++  G+ PD Y+F SLLKACA   A A EEG+Q H  A+K G   + YV  TLI
Sbjct: 123 ARVFVRMMEEGVAPDTYTFVSLLKACA--SARAGEEGRQAHGVAVKAGAAEHEYVAPTLI 180

Query: 167 NLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV 226
           N+YAEC DV AAR +F+ +   CVVSYNA+ITA  RSS P EAL LFRE+Q + LKPT V
Sbjct: 181 NMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSV 240

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
           T++S LS+CALLG+L+LG+WIH+YI+K  LD  VKVNTALIDM+AKCG L+DA+ VF +M
Sbjct: 241 TLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDM 300

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
             +D QAWS M+VAYA HG G ++I MFEEM K  + PD++TFLG+LYACSH+G+V EG 
Sbjct: 301 ESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGL 360

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
            YF SMR+ YGIV GIKHYGC+ DLL R+G+L+ AY+FIDELPIK T ILWRTLLS+C+ 
Sbjct: 361 QYFDSMRE-YGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAG 419

Query: 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCS 466
           H ++ + K+V ERI ELDDSHGGDYVI SNLCA  GRWE+++ +RKLM ++GV+KVPGCS
Sbjct: 420 HGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCS 479

Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
           SIE++N+V EFF+GDG H +S + ++ +DE++++LK+VGYVP+TS V H +M +EEK  +
Sbjct: 480 SIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATS 539

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           LRYHSEKLAI+FGLLNT PGTT+R+VKNLRVC
Sbjct: 540 LRYHSEKLAISFGLLNTAPGTTLRIVKNLRVC 571


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/576 (56%), Positives = 412/576 (71%), Gaps = 26/576 (4%)

Query: 6   SPPITQSPPPKLCTNTPNA-------------LSLLPRCTSFRGLKQIHAVTIKTHLQND 52
           SPP+  +P P L      +             L  LP+CT+ R L Q+HA  +K+ LQ  
Sbjct: 3   SPPLAATPTPFLLPAKSKSPLAAAPAAQQHPLLPYLPQCTTLRALAQLHAAAVKSGLQAH 62

Query: 53  LNVLTKLINFCTQNPTT--SSMEHAHLLFDRIPEP-DIVLFNTMARGYSR------SKTP 103
              +T+L+  CT       + + +A  +FDRIP P D+V +NT+ RGY+R      ++ P
Sbjct: 63  PAFVTRLLTLCTDQGAAKPAQLSYARQVFDRIPGPGDVVWYNTLLRGYARCSAAGGARPP 122

Query: 104 IR-AIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVC 162
              A  +FV +L  G+ PD Y+F SLLKACA   A A EEG+Q H  A+K+G   + YV 
Sbjct: 123 AEEAARVFVRMLEEGVAPDTYTFVSLLKACA--AARAGEEGRQAHGVAVKVGAAEHEYVL 180

Query: 163 TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK 222
            TLIN+YAEC D  AAR +F  +   CVVSYNA+ITA  RSSRP EAL LFRE+Q + LK
Sbjct: 181 PTLINMYAECGDARAARTMFGRVDGECVVSYNAMITAAVRSSRPGEALVLFREMQAKGLK 240

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
            T VT++S LS+CALLG+L+LG+WIHEY++K  LD  VKVNTALIDM+ KCG L+DA+SV
Sbjct: 241 LTSVTLISVLSACALLGALELGRWIHEYVRKVQLDSLVKVNTALIDMYGKCGSLEDAISV 300

Query: 283 FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342
           F  M  +D QAWS MIVAYA H  G ++I +FEEM K  + PD++TFLG+LYACSH+GLV
Sbjct: 301 FQGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYACSHSGLV 360

Query: 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
            EG  YF SMR+ +G+VPGIKHYGC+ DLL R+G+LD AY FIDELPIK T ILWRTLLS
Sbjct: 361 SEGLQYFDSMRE-FGLVPGIKHYGCVADLLARSGQLDRAYEFIDELPIKPTAILWRTLLS 419

Query: 403 SCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKV 462
           +C S  +  L KQV ERI ELDDSHGGDYVI SNLCA  GRWE+++ +RKLM ++GV+KV
Sbjct: 420 ACGSRGDADLGKQVFERILELDDSHGGDYVIFSNLCANTGRWEEMNRVRKLMNEKGVVKV 479

Query: 463 PGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEE 522
           PGCSSIEV+N V EFF+GDG H  S D ++ +D ++++LK+ GYVP+TS V H +M +EE
Sbjct: 480 PGCSSIEVDNRVHEFFAGDGRHPKSLDARRMVDGVIEQLKLAGYVPNTSHVFHVEMGEEE 539

Query: 523 KEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K ++LRYHSEKLAI+FGLLNT PGTT+RVVKNLRVC
Sbjct: 540 KAVSLRYHSEKLAISFGLLNTSPGTTLRVVKNLRVC 575


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/568 (57%), Positives = 413/568 (72%), Gaps = 17/568 (2%)

Query: 1   MATTPSPPIT---QSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLT 57
           +  TP+P +    +SPPP+     P  LS LP CTS R L Q+HA  +K  L     ++T
Sbjct: 6   LTATPAPLLPAKPKSPPPQ---QHP-VLSHLPHCTSLRTLAQLHAAAVKAGLAAHPALVT 61

Query: 58  KLINFCT-QNPTTSSMEHAHLLFDRIPEP-DIVLFNTMARGYSRSKTP-----IRAIFLF 110
           +L+  CT  +   + + +A  +FDR+P P D V +NT+ RGY+RS  P       A+ +F
Sbjct: 62  RLLTLCTGPDAGPAHLAYARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVF 121

Query: 111 VELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA 170
           V +L  G+ PD Y+F SLLKACA   A A EEG+Q H  A+KLG   + YV  TLIN+YA
Sbjct: 122 VRMLEEGVAPDTYTFVSLLKACA--AARAGEEGRQAHALAVKLGAADHDYVRPTLINMYA 179

Query: 171 ECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLS 230
           EC D  AAR +F      CVVSYNA+I A  RSSRP EAL LFRE+Q + LKPT VT++S
Sbjct: 180 ECGDARAARVMFGGTDGGCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVIS 239

Query: 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290
            LS+CALLG+L+LG+W+H+Y++K GL   VKV+TALIDM+AKCG L+DA+ VF  M  KD
Sbjct: 240 VLSACALLGALELGRWVHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESKD 299

Query: 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350
            QAWS MIVAYA HG G ++I +FEEM K  + PD+ITFLG+LYACSH+GLV EG  YF 
Sbjct: 300 RQAWSVMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFD 359

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
            M+D +GIVPGIKHYGC+ DLL R+G+L+ AY+FIDELPI  TPILWRTLLS+C  H + 
Sbjct: 360 DMKD-HGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDF 418

Query: 411 GLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEV 470
            L K+V ERI +LDDSHGGDYVI SNLCA  G WE+++ +RKLM ++GV+KVPGCSSIE+
Sbjct: 419 ELGKRVFERILKLDDSHGGDYVIFSNLCANTGYWEEMNMVRKLMSEKGVVKVPGCSSIEI 478

Query: 471 NNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYH 530
           +N V EFF+GDG H  S + +K +DE++ +LK+VGYVP+TS V H +M +EEK I+L+YH
Sbjct: 479 DNTVHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYVPNTSHVFHVEMGEEEKAISLKYH 538

Query: 531 SEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           SEKLAI FGLLNT PG T+RVVKNLRVC
Sbjct: 539 SEKLAIAFGLLNTAPGATLRVVKNLRVC 566


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/572 (56%), Positives = 417/572 (72%), Gaps = 22/572 (3%)

Query: 6   SPPITQSPPPKLCTNTPNA----------LSLLPRCTSFRGLKQIHAVTIKTH--LQNDL 53
           S P+T +P P L   + N           L+ LP CTS R L Q+HAV +K    LQ   
Sbjct: 3   SSPLTATPSPLLPAKSKNPPPHHHHHNPLLAYLPHCTSLRALAQLHAVAVKAGGGLQAHP 62

Query: 54  NVLTKLINFCTQN--PTTSSMEHAHLLFDRIPEP-DIVLFNTM----ARGYSRSKTPIRA 106
             +T+L+  CT+      + + +A  +FDRIP P D+V +NT+    ARG         A
Sbjct: 63  AFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGGGGGGAEEA 122

Query: 107 IFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI 166
             +FV ++  G+ PD Y+F SLLKACA   A A EEG+Q H  A+K G   + YV  TLI
Sbjct: 123 ARVFVRMMEEGVAPDTYTFVSLLKACA--SARAGEEGRQAHGVAVKAGAAEHEYVAPTLI 180

Query: 167 NLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV 226
           N+YAEC DV AAR +F+ +   CVVSYNA+ITA  RSS P EAL LFRE+Q + LKPT V
Sbjct: 181 NMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSV 240

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
           T++S LS+CALLG+L+LG+WIH+YI+K  LD  VKVNTALIDM+AKCG L+DA+ VF +M
Sbjct: 241 TLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDM 300

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
             +D QAWS M+VAYA HG G ++I MFEEM K  + PD++TFLG+LYACSH+G+V EG 
Sbjct: 301 ESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGL 360

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
            YF SMR+ YGIV GIKHYGC+ DLL R+G+L+ AY+FIDELPIK T ILWRTLLS+C+ 
Sbjct: 361 QYFDSMRE-YGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAG 419

Query: 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCS 466
           H ++ + K+V ERI ELDDSHGGDYVI SNLCA  GRWE+++ +RKLM ++GV+KVPGCS
Sbjct: 420 HGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCS 479

Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
           SIE++N+V EFF+GDG H +S + ++ +DE++++LK+VGYVP+TS V H +M +EEK  +
Sbjct: 480 SIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATS 539

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           LRYHSEKLAI+FGLLNT PGTT+R+VKNLRVC
Sbjct: 540 LRYHSEKLAISFGLLNTAPGTTLRIVKNLRVC 571


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/572 (56%), Positives = 417/572 (72%), Gaps = 22/572 (3%)

Query: 6   SPPITQSPPPKLCTNTPNA----------LSLLPRCTSFRGLKQIHAVTIKTH--LQNDL 53
           S P+T +P P L   + N           L+ LP CTS R L Q+HAV +K    LQ   
Sbjct: 3   SSPLTATPSPLLPAKSKNPPPHHHHHNPLLAYLPHCTSLRALAQLHAVAVKAGGGLQAHP 62

Query: 54  NVLTKLINFCTQN--PTTSSMEHAHLLFDRIPEP-DIVLFNTM----ARGYSRSKTPIRA 106
             +T+L+  CT+      + + +A  +FDRIP P D++ +NT+    ARG         A
Sbjct: 63  AFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVIWYNTLLRGYARGGGGGGGAEEA 122

Query: 107 IFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI 166
             +FV ++  G+ PD Y+F SLLKACA   A A EEG+Q H  A+K G   + YV  TLI
Sbjct: 123 ARVFVRMMEEGVAPDTYTFVSLLKACA--SARAGEEGRQAHGVAVKAGAAEHEYVAPTLI 180

Query: 167 NLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV 226
           N+YAEC DV AAR +F+ +   CVVSYNA+ITA  RSS P EAL LFRE+Q + LKPT V
Sbjct: 181 NMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSV 240

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
           T++S LS+CALLG+L+LG+WIH+YI+K  LD  VKVNTALIDM+AKCG L+DA+ VF +M
Sbjct: 241 TLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDM 300

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
             +D QAWS M+VAYA HG G ++I MFEEM K  + PD++TFLG+LYACSH+G+V EG 
Sbjct: 301 ESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGL 360

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
            YF SMR+ YGIV GIKHYGC+ DLL R+G+L+ AY+FIDELPIK T ILWRTLLS+C+ 
Sbjct: 361 QYFDSMRE-YGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAG 419

Query: 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCS 466
           H ++ + K+V ERI ELDDSHGGDYVI SNLCA  GRWE+++ +RKLM ++GV+KVPGCS
Sbjct: 420 HGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCS 479

Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
           SIE++N+V EFF+GDG H +S + ++ +DE++++LK+VGYVP+TS V H +M +EEK  +
Sbjct: 480 SIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATS 539

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           LRYHSEKLAI+FGLLNT PGTT+R+VKNLRVC
Sbjct: 540 LRYHSEKLAISFGLLNTAPGTTLRIVKNLRVC 571


>gi|326522825|dbj|BAJ88458.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 551

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/552 (56%), Positives = 403/552 (73%), Gaps = 8/552 (1%)

Query: 6   SPPITQSPPPKLCTNTPNAL-SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCT 64
           S P+T +P P L       L   LP CTS R L Q+HA  +K+ L     ++T+L+  CT
Sbjct: 3   SSPLTATPTPLLPAKPKGPLLPHLPHCTSLRALAQLHAAAVKSGLGAHPALVTRLLTLCT 62

Query: 65  -QNPTTSSMEHAHLLFDRIPEP-DIVLFNTMARGYSRSK-TPIRAIFLFVELLNSGLLPD 121
            Q    + + +A  +FDRIP P D+V +NT+ RGY+RS      A  +   +L  G+ PD
Sbjct: 63  KQGAAPAHLAYARQVFDRIPTPGDVVWYNTLLRGYARSSDGAAEAARVLARMLEEGVAPD 122

Query: 122 DYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRI 181
            Y+F SLLKACA   A A EEG+Q H  A+K G   + YV  TLIN+YAEC D  +AR +
Sbjct: 123 TYTFVSLLKACAA--ARAGEEGRQAHGVAVKTGAADHEYVLPTLINMYAECGDARSARAM 180

Query: 182 FENI-SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
           F  + +  CVVSYNA+ITA  RSSRP EAL LFRE+Q + LKPT VT+ S LS+CALLG+
Sbjct: 181 FGRVPNGDCVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKPTSVTVTSVLSACALLGA 240

Query: 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVA 300
           L+LG+WIHEY++K GLD  VKVNTALIDM+ KCG L+DA+ VF  M  +D QAWS MIVA
Sbjct: 241 LELGRWIHEYVRKAGLDSLVKVNTALIDMYGKCGSLEDAIDVFQGMESRDRQAWSVMIVA 300

Query: 301 YATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP 360
           YA H  G ++I +FEEM K  + PD +TFLG+LYACSH+G+V EG  YF SMR+ YGIVP
Sbjct: 301 YANHSYGREAISLFEEMKKQGIRPDAVTFLGVLYACSHSGMVSEGLQYFDSMRE-YGIVP 359

Query: 361 GIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
           GIKHYGC+ DLL R+G+L++AY+FIDELPI+ T ILWRTLLS+C SH  + L K+V ERI
Sbjct: 360 GIKHYGCVTDLLARSGQLEKAYKFIDELPIQPTAILWRTLLSACGSHGAVDLGKRVFERI 419

Query: 421 FELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSG 480
            ELDD+HG DYVI SNLCA  G+WE+++ +RKLM ++GV+KVPGCSSIE++N V EFF+G
Sbjct: 420 LELDDTHGSDYVIFSNLCANTGKWEEMNRVRKLMNEKGVVKVPGCSSIEIDNRVHEFFAG 479

Query: 481 DGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGL 540
           DG H  S D ++ +D+++++LK+VGYVP+TS V H +M +EEK  +LRYHSEKLAI+FGL
Sbjct: 480 DGRHPQSQDARRMVDQVIEQLKLVGYVPNTSQVFHVEMGEEEKATSLRYHSEKLAISFGL 539

Query: 541 LNTPPGTTIRVV 552
           LNT PGTT+RVV
Sbjct: 540 LNTSPGTTLRVV 551


>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
 gi|194689034|gb|ACF78601.1| unknown [Zea mays]
 gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
          Length = 606

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/567 (56%), Positives = 409/567 (72%), Gaps = 17/567 (2%)

Query: 6   SPPITQSPPPKLCTNTPNA-------LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTK 58
           S P+T +P P L  N P +       LS LP CTS RGL Q+HA  +K  L     ++T+
Sbjct: 3   SAPLTATPAPLLPANKPKSAAPQHPLLSHLPHCTSLRGLAQLHAAAVKAGLAAHPALVTR 62

Query: 59  LINFCTQ-NPTTSSMEHAHLLFDRIPEP-DIVLFNTMARGYSR-----SKTPIRAIFLFV 111
           L+  CT      + + +A  +FDR+ +P D V +NT+ RGY+R     S +   A+ +FV
Sbjct: 63  LLTLCTGPGAGPAHLAYARQVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFV 122

Query: 112 ELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE 171
            +L  G+ PD Y+F SLLKACA   A A E G+Q H  A+KLG   + YV  TLIN+YAE
Sbjct: 123 RMLEEGVAPDTYTFVSLLKACA--AARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAE 180

Query: 172 CSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSA 231
           C D  AAR  F      CVVSYNA+I A  RSSRP EAL LFRE+Q + L PT VT++S 
Sbjct: 181 CGDARAARVTFGRADGDCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISV 240

Query: 232 LSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDT 291
           LS+CALLG+L LG+W+H+Y++K GL   VKV+TAL+DM+AKCG L+DA++VF  M  +D 
Sbjct: 241 LSACALLGALQLGRWLHDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESRDR 300

Query: 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYS 351
           QAWS MIVAYA HG G ++I +FEEM K  + PD+ITFLGLLYACSH+GLV EG  YF  
Sbjct: 301 QAWSVMIVAYANHGYGREAISLFEEMKKQGMKPDDITFLGLLYACSHSGLVSEGLRYFDD 360

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
           M+D +GIVPGIKHYGC+ DLL R+G+L+ AY+FIDELPI  TPILWRTLLS+C  H ++ 
Sbjct: 361 MKD-HGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDVE 419

Query: 412 LAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVN 471
           L K+V ERI ELDDSHGGDYVI SNLCA  G WE+++ +RKLM D+GV+KVPGCSSIE++
Sbjct: 420 LGKRVFERILELDDSHGGDYVIFSNLCANTGYWEEMNRVRKLMSDKGVVKVPGCSSIEID 479

Query: 472 NVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHS 531
           N V EFF+GDG H  S + +K +DE++ +LK+VGY+PDTS V H +M +EEK I+L+YHS
Sbjct: 480 NTVHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYIPDTSHVFHVEMGEEEKAISLKYHS 539

Query: 532 EKLAITFGLLNTPPGTTIRVVKNLRVC 558
           EKLAI FGLLNT PG T+RVVKNLRVC
Sbjct: 540 EKLAIAFGLLNTAPGATLRVVKNLRVC 566


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/553 (43%), Positives = 357/553 (64%), Gaps = 21/553 (3%)

Query: 18  CTNTPNA------LSLLPRCTSFR-GLKQIHAVTIK-----THLQNDLNVLTKLINFCTQ 65
           C  +P +      ++LL  C S +   +QIHA +I+     T+      ++  L++FC  
Sbjct: 30  CPESPKSYILKKCIALLLSCASSKFKFRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFC-- 87

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSF 125
               S M +AH +F +I  P+I  +NTM RGY+ S+ P+ A+ L+ ++  S + PD +++
Sbjct: 88  ----SPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTY 143

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
           P LLKA A +    + EG+++H  AI+ G  S ++V  TL+++YA C   E+A ++FE +
Sbjct: 144 PFLLKAIAKL--MDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELM 201

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245
           +E  +V++N++I  YA + RPNEAL+LFRE+  R ++P   TM+S LS+CA LG+L LG+
Sbjct: 202 AERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGR 261

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
             H Y+ K GLD  +    AL+D++AKCG +  A  VFD M  K   +W+++IV  A +G
Sbjct: 262 RAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNG 321

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY 365
            G +++ +F+E+ +  + P EITF+G+LYACSH G+VDEG++YF  M+++YGIVP I+HY
Sbjct: 322 FGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHY 381

Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
           GCMVDLLGRAG + +A+ FI  +P++   ++WRTLL +C+ H +L L +    ++ +L+ 
Sbjct: 382 GCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEP 441

Query: 426 SHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHS 485
            H GDYV+LSNL A   RW DV  +R+ M   GV K PG S +E+ N + EF  GD  H 
Sbjct: 442 KHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHP 501

Query: 486 YSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPP 545
            + ++   L E+ K LK+ GYVP  S V   D+E+EEKE AL YHSEK+AI F L+NT  
Sbjct: 502 QTEEIYVKLAEITKLLKLEGYVPHISNV-LADIEEEEKETALSYHSEKIAIAFMLINTAA 560

Query: 546 GTTIRVVKNLRVC 558
           G  IRVVKNLRVC
Sbjct: 561 GIPIRVVKNLRVC 573


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 242/606 (39%), Positives = 361/606 (59%), Gaps = 62/606 (10%)

Query: 1   MATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLI 60
           MA + S P+T++PP          LSL   C S   LKQIH+ TIKT +  +  +  K++
Sbjct: 4   MACSQSSPVTENPP----------LSLFETCKSMYHLKQIHSRTIKTGIICNPIIQNKIL 53

Query: 61  NFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP 120
           +FC        M +A  LFD IPEP +  +N M +GYSR   P   + L++E+L   + P
Sbjct: 54  SFCCSREF-GDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKP 112

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           D Y++P L K      + AL+ G++LHC  +K GL+SN++    LIN+Y+ C  ++ AR 
Sbjct: 113 DCYTYPFLFKGFT--RSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARG 170

Query: 181 IFENISEPCVVSYNAIITAYARSSRP---------------------------------- 206
           IF+   +  VV++NA+I+ Y R  +                                   
Sbjct: 171 IFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVS 230

Query: 207 --------------NEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
                          EAL LFRE+Q   +KP + TM+S L++CA LG+L+LG+WI  YI 
Sbjct: 231 WTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYID 290

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           K  +     V  ALIDM+ KCG ++ A+S+F+ +  +D   W+AM+V  A +G G +++ 
Sbjct: 291 KNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALN 350

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           MF +M+KA V+PDE+T++G+L AC+HTG+VDEG  +F SM  ++GI P I HYGCMVDLL
Sbjct: 351 MFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLL 410

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432
           G+AG L EA+  I  +P+K   I+W  LL +C  H +  +A++ IE+I EL+ ++G  YV
Sbjct: 411 GKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYV 470

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
           +  N+ A   +W+ +  LR++M DRG+ K PGCS IE+N +V EF +GD  H  + ++  
Sbjct: 471 LQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYG 530

Query: 493 ALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVV 552
            L+++  +LK+ GY P+TS V   D+ +E+KE A+  HSEKLAI FGL+N+ PG TIR+V
Sbjct: 531 KLNKMTSDLKIAGYSPNTSEVFL-DIAEEDKENAVYRHSEKLAIAFGLINSGPGVTIRIV 589

Query: 553 KNLRVC 558
           KNLR+C
Sbjct: 590 KNLRMC 595


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/537 (41%), Positives = 355/537 (66%), Gaps = 6/537 (1%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           P  L +  R  +    +QIHA+ +K    +   V   LI+          +E A  +FD 
Sbjct: 128 PCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYAN---CGEVEVARRVFDE 184

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           + E ++  +N+M  GY++S      + LF E+L   +  D+ +  S+L AC  +    LE
Sbjct: 185 MSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLAD--LE 242

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G+ ++ +  + GL  N  + T+L+++YA+C  V+ ARR+F+ +    VV+++A+I+ Y+
Sbjct: 243 LGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYS 302

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++SR  EAL LF E+Q+ N+ P ++TM+S LSSCA+LG+L+ GKW+H +IKK  +   V 
Sbjct: 303 QASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVT 362

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           + TAL+D +AKCG ++ ++ VF  M  K+  +W+ +I   A++GQG K++  F  M++  
Sbjct: 363 LGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKN 422

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           V P+++TF+G+L ACSH GLVDEG + F SM   +GI P I+HYGCMVD+LGRAG ++EA
Sbjct: 423 VEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEA 482

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
           ++FI  +PI+   ++WRTLL+SC  H N+ + ++ ++++  L+ +H GDY++LSN+ A  
Sbjct: 483 FQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASV 542

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           GRWED   +R  MK++G+ K PGCS IE++ V+ EFF+ D VHS S ++  A+++++K++
Sbjct: 543 GRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQI 602

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K  GYVP+T+     D E+++KE ++ +HSEKLAI FGL+ +PPGTTIR+ KNLRVC
Sbjct: 603 KSAGYVPNTAEARL-DAEEDDKESSVSHHSEKLAIAFGLIKSPPGTTIRITKNLRVC 658



 Score =  255 bits (652), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 139/421 (33%), Positives = 243/421 (57%), Gaps = 15/421 (3%)

Query: 2   ATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLIN 61
           A TP+   + S  P+     P  L +L +C + R L +IHA  IKT L     V   L+ 
Sbjct: 10  AKTPTAKTSISLFPE----NPKTL-ILEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLE 64

Query: 62  FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPD 121
                  TS M++A  +F +I EPD   +N M RG++  ++P  AI LF E+  + + PD
Sbjct: 65  SAAILLPTS-MDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPD 123

Query: 122 DYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRI 181
           +++FP +LK C+ +  +AL EG+Q+H   +K G  S+ +V  TLI++YA C +VE ARR+
Sbjct: 124 EFTFPCILKVCSRL--QALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRV 181

Query: 182 FENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSL 241
           F+ +SE  V ++N++   Y +S    E + LF E+ E +++  +VT++S L++C  L  L
Sbjct: 182 FDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADL 241

Query: 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
           +LG+WI+ Y+++ GL     + T+L+DM+AKCG++D A  +FD M  +D  AWSAMI  Y
Sbjct: 242 ELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGY 301

Query: 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVP 360
           +   +  +++ +F EM KA + P+EIT + +L +C+  G ++ G W +F+  + +  +  
Sbjct: 302 SQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTV 361

Query: 361 GIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
            +     ++D   + G ++ +     ++P+K+  + W  L+   +S+   G  K+ +E  
Sbjct: 362 TLG--TALMDFYAKCGSVESSIEVFGKMPVKNV-LSWTVLIQGLASN---GQGKKALEYF 415

Query: 421 F 421
           +
Sbjct: 416 Y 416


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/568 (40%), Positives = 354/568 (62%), Gaps = 17/568 (2%)

Query: 4   TPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFC 63
           TP+P        +   N P  LSL+ +C+  + LKQIHA  ++T L  D    ++LI   
Sbjct: 19  TPNPNSITLNNDRYFANHPT-LSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAA 77

Query: 64  TQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN-SGLLPDD 122
             +P   S+++A  +FD+IP P++  +NT+ R Y+ S  P +++ +F+ +L+ S   PD 
Sbjct: 78  ALSPF-PSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDK 136

Query: 123 YSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF 182
           ++FP L+KA + +  E L  GK  H   IK+ L S++++  +LI+ YA+C ++    R+F
Sbjct: 137 FTFPFLIKAASEL--EELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVF 194

Query: 183 ENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242
            N     VVS+N++ITA+ +   P EAL LF+E++ +N+KP  +TM+  LS+CA     +
Sbjct: 195 VNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFE 254

Query: 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYA 302
            G+W+H YI++  + + + ++ A++DM+ KCG ++DA  +FD M  KD  +W+ M+V YA
Sbjct: 255 FGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYA 314

Query: 303 T------------HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350
                        HG G  +I +F +M + +V P+ +TF  +L ACSH GLV+EG  +F 
Sbjct: 315 KIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFN 374

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
            M   YG++PG+KHY CMVD+LGRAG L+EA   I+++P+     +W  LL +C+ H N+
Sbjct: 375 QMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENV 434

Query: 411 GLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEV 470
            LA+Q   ++ EL+  + G YV+LSN+ A+AG+W+ V  LRKLM+D G+ K PGCSSIEV
Sbjct: 435 VLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEV 494

Query: 471 NNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYH 530
           + +V EF  GD  H  +  +   LDE+V  L+ +GYVP+ S +     E++ KE AL  H
Sbjct: 495 DGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLH 554

Query: 531 SEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           SEKLAI FGL++T     IR+VKNLRVC
Sbjct: 555 SEKLAIAFGLISTGQSQPIRIVKNLRVC 582


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/546 (43%), Positives = 337/546 (61%), Gaps = 39/546 (7%)

Query: 45  IKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPI 104
           ++T L  D    +K++ FC  +  + S+ +A L+F++IP P     N++ RGY+    P 
Sbjct: 2   LRTCLFVDPFSASKIVAFCALH-DSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPR 60

Query: 105 RAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTT 164
           +AI  +  ++  GL PD ++FPSL K+C       L EGKQLHC + KLG  S+ Y+  T
Sbjct: 61  QAILFYQLMMLQGLDPDRFTFPSLFKSCG-----VLCEGKQLHCHSTKLGFASDAYIQNT 115

Query: 165 LINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR---------- 214
           L+N+Y+ C  + +AR++F+ +    VVS+  +I AYA+   P+EA+ LFR          
Sbjct: 116 LMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFC 175

Query: 215 ----------------------ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
                                 E+Q   +K   VTM S L +C  LG+L+LGKW+H YI+
Sbjct: 176 WNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIE 235

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           K  ++  V + TAL+DM+AKCG ++ A+ VF  M  KD   W+A+IV  A  GQG K++ 
Sbjct: 236 KEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALE 295

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           +F EM  ++V PD ITF+G+L ACSH GLV+EG  YF SM +KYGI P I+HYGCMVD+L
Sbjct: 296 LFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDML 355

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432
           GRAGR+ EA   I  +P+     +   LLS+C  H NL +A++  +++ ELD  +GG YV
Sbjct: 356 GRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYV 415

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
           +LSN+ +    WE    +R+LM +R + K PGCS+IEV  VV EF  GD  H  S+++ +
Sbjct: 416 LLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYE 475

Query: 493 ALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVV 552
            LD++++ LK  GYVPD S V   DM+++EKE  L  HSEKLAI FGLL+T PGT IRVV
Sbjct: 476 TLDDMMRRLKSAGYVPDKSEVLF-DMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVV 534

Query: 553 KNLRVC 558
           KNLRVC
Sbjct: 535 KNLRVC 540



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 41/219 (18%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           SLL  CT    L   K +H    K  ++ D+ + T L++   +     S+E A  +F  +
Sbjct: 213 SLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAK---CGSIESAMRVFQEM 269

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           PE D++ +  +  G +     ++A+ LF E+  S + PD  +F  +L AC+  G      
Sbjct: 270 PEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGL----- 324

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
                       +N  +    ++ N Y                 +P +  Y  ++    R
Sbjct: 325 ------------VNEGIAYFNSMPNKYG---------------IQPSIEHYGCMVDMLGR 357

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSL 241
           + R  EA  L   +Q   + P    ++  LS+C + G+L
Sbjct: 358 AGRIAEAEDL---IQNMPMAPDYFVLVGLLSACRIHGNL 393


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/559 (41%), Positives = 358/559 (64%), Gaps = 17/559 (3%)

Query: 1   MATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFR-GLKQIHAVTIKTHLQNDLNVLTKL 59
           ++TTP  P+T+             +SLL  C S +  LKQIHA +I+  +  +   + K 
Sbjct: 9   VSTTPENPLTK------------CISLLQFCASSKHKLKQIHAFSIRHGVSLNNPDMGKH 56

Query: 60  INFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLL 119
           + F T    ++ M +A+ +F  I  P++  +NT+ RGY+ S  P  A   + +++ S + 
Sbjct: 57  LIF-TIVSLSAPMSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVE 115

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179
           PD +++P LLKA +   +  + EG+ +H   I+ G  S ++V  +L+++YA C D E+A 
Sbjct: 116 PDTHTYPFLLKAIS--KSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAY 173

Query: 180 RIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG 239
           ++FE + E  +V++N++I  +A + RPNEAL+LFRE+    ++P   T++S LS+ A LG
Sbjct: 174 KVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELG 233

Query: 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIV 299
           +L+LG+ +H Y+ K GL K   V  +L+D++AKCG + +A  VF  MS ++  +W+++IV
Sbjct: 234 ALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIV 293

Query: 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359
             A +G G +++ +F+EM    + P EITF+G+LYACSH G++DEG+ YF  M+++ GI+
Sbjct: 294 GLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGII 353

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIER 419
           P I+HYGCMVDLL RAG + +AY +I  +P++   ++WRTLL +C+ H +LGL +     
Sbjct: 354 PRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSH 413

Query: 420 IFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFS 479
           +  L+  H GDYV+LSNL A   RW DV  +R+ M   GV K PG S +E+ N V EF  
Sbjct: 414 LLNLEPKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTM 473

Query: 480 GDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFG 539
           GD  H  S D+   L+++ + LK+ GYVP T+ V   D+E+EEKE AL YHSEK+AI F 
Sbjct: 474 GDRSHPQSQDVYALLEKITELLKLEGYVPHTANV-LADIEEEEKEQALSYHSEKVAIAFM 532

Query: 540 LLNTPPGTTIRVVKNLRVC 558
           LLNTPPGT IRV+KNLRVC
Sbjct: 533 LLNTPPGTPIRVMKNLRVC 551


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/584 (40%), Positives = 350/584 (59%), Gaps = 37/584 (6%)

Query: 8   PITQSPPPKLCT--NTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQ 65
           PI  +P  +L +  N    L LL RC++   L+QIH   +KT L  D    +KL+ FC  
Sbjct: 3   PILCTPTSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCA- 61

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSF 125
           +P + S+ +A  +FDRI  P+  ++NTM RGYS SK P  A+ L+  +L   +  + Y+F
Sbjct: 62  SPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTF 121

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
           P LLKAC+ +   ALEE +Q+H   IK+G  S +Y   +L+N+Y++  D+++AR +F+ +
Sbjct: 122 PFLLKACSSM--SALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQV 179

Query: 186 SEPCVVSYNAIITAYAR-------------------------------SSRPNEALSLFR 214
            +   VS+N++I  Y +                               + +P EAL+LF 
Sbjct: 180 DQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFH 239

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
            +Q   +K  +V ++S L +CA LG LD GKWIH YIKK+ ++    +   LIDM+AKCG
Sbjct: 240 RMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCG 299

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
            L++A+ VF  M  K    W+AMI  YA HG+G +++  F +M  A V P+++TF G+L 
Sbjct: 300 DLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILT 359

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           ACSH GLV E    F SM   +G  P I+HYGCMVDLLGRAG L EA   I+ +P+K   
Sbjct: 360 ACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNA 419

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454
            +W  LL++C  H NL L KQ+ + + ++D  HGG Y+ L+++ A AG W     +R+ M
Sbjct: 420 AIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQM 479

Query: 455 KDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVH 514
           K++GV K+PGCS I VN    EF +GD  H    ++   L+++V+ L+  GY P    + 
Sbjct: 480 KEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDL- 538

Query: 515 HGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             D+ED+EKE A+ +HSEKLA+TFGL++T PG TIR+VKNLRVC
Sbjct: 539 LLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVC 582


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/586 (39%), Positives = 355/586 (60%), Gaps = 37/586 (6%)

Query: 6   SPPITQSPPPKLCTNTPNALSL--LPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFC 63
           S  + Q+ PP L +   + L L  L  C++   LKQ H+  I+  L  D + + ++I FC
Sbjct: 3   SLQLLQASPPSLSSAKAHKLPLYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFC 62

Query: 64  TQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDY 123
             +  +  + +A  +FD+IP PD  ++NT+ RGY R +     IF++  +L+  + P+ +
Sbjct: 63  AIS-KSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKF 121

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           ++P L++AC C+   A+EEGKQ+H   +K G  ++ +    LI++Y     +E ARR+F+
Sbjct: 122 TYPPLIRAC-CIDY-AIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFD 179

Query: 184 NISEPCVVSY-------------------------------NAIITAYARSSRPNEALSL 212
           N+ +  VVS+                               NA+I AY +S+R +EA +L
Sbjct: 180 NMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFAL 239

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           F  ++  N+        S LS+C  LG+L+ GKWIH YI+K G++   K+ T +IDM+ K
Sbjct: 240 FDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCK 299

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
           CG L+ A  VF+ +  K   +W+ MI   A HG+G  +I +F+EM +  V+PD ITF+ +
Sbjct: 300 CGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNV 359

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L AC+H+GLV+EG +YF  M +  G+ PG++H+GCMVDLLGRAG L+EA + I+E+P+  
Sbjct: 360 LSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNP 419

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452
              +   L+ +C  H N  L +Q+ +++ EL+  + G YV+L+NL A AGRWEDV  +RK
Sbjct: 420 DAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRK 479

Query: 453 LMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSL 512
           LM DRGV K PG S IE  + V EF +G   H  + ++   LDE+++ ++ +GYVPDT  
Sbjct: 480 LMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDG 539

Query: 513 VHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           V H D+++EEKE  L YHSEKLAI FGLL T PG T+R+ KNLR+C
Sbjct: 540 VLH-DIDEEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRIC 584


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/536 (41%), Positives = 349/536 (65%), Gaps = 9/536 (1%)

Query: 26  SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  C+  + L+   Q+HA+ +K+  +++  V   LI             H   +FD +
Sbjct: 126 SVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARH---VFDGM 182

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           PE  IV +N+M  GY+++      + LF ++L   +  DD +  S+L AC  +    LE 
Sbjct: 183 PERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLAN--LEI 240

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G+ +  + +  GL  N  + T+LI++YA+C  V+ AR++F+ + +  VV+++A+I+ YA+
Sbjct: 241 GELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQ 300

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
           + R  EAL+LF E+Q+ N+ P +VTM+S L SCA+LG+ + GKW+H YIKK  +   V +
Sbjct: 301 ADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTL 360

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
            T LID +AKCG +D +V VF  MS K+   W+A+I   A +G+G  ++  F  M++  V
Sbjct: 361 GTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDV 420

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            P+++TF+G+L ACSH  LVD+G + F SMR  + I P I+HYGCMVD+LGRAG L+EAY
Sbjct: 421 KPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAY 480

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
           +FID +P     ++WRTLL+SC +H N+ +A++ +E I  L+ +H GDY++LSN  A  G
Sbjct: 481 QFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVG 540

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           R ED   +R L+K++ + K+PGCS IE++ VV EFFS DG H +S ++  ALD+++K++K
Sbjct: 541 RVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALDKMMKQIK 600

Query: 503 MVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +GYVP+T      + E+E KE ++ +HSEKLAI +GL+ T P TTIR+ KNLR+C
Sbjct: 601 RLGYVPNTDDARL-EAEEESKETSVSHHSEKLAIAYGLIRTSPRTTIRISKNLRMC 655



 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 130/417 (31%), Positives = 232/417 (55%), Gaps = 14/417 (3%)

Query: 9   ITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPT 68
           ITQ P        P +L +L +C + + L+Q+HA  +KT    D  ++T+ +        
Sbjct: 16  ITQFP------ENPKSL-ILQQCKTPKDLQQVHAHLLKTRRLLD-PIITEAVLESAALLL 67

Query: 69  TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSL 128
             ++++A  +F+ I +P+   +N M RG +  ++P  A+ LF ++    +  D ++F S+
Sbjct: 68  PDTIDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSV 127

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP 188
           LKAC+ +  +AL EG+Q+H   +K G  SN +V  TLI +YA C  +  AR +F+ + E 
Sbjct: 128 LKACSRM--KALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPER 185

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
            +V++N++++ Y ++   +E + LFR++ E  ++  DVTM+S L +C  L +L++G+ I 
Sbjct: 186 SIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIG 245

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
           EYI   GL +   + T+LIDM+AKCG++D A  +FD M  +D  AWSAMI  YA   +  
Sbjct: 246 EYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCK 305

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGC 367
           +++ +F EM K  V P+E+T + +LY+C+  G  + G W +FY  + K  +   +     
Sbjct: 306 EALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQ-- 363

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
           ++D   + G +D +     E+  K+    W  L+   +++    +A +    + E D
Sbjct: 364 LIDFYAKCGYIDRSVEVFKEMSFKNV-FTWTALIQGLANNGEGKMALEFFSSMLEND 419


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/570 (40%), Positives = 340/570 (59%), Gaps = 33/570 (5%)

Query: 20  NTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLF 79
           N    +S L RC+    LKQIHA  +KT L  D   +TK ++FC  + ++  + +A ++F
Sbjct: 13  NLYETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVF 72

Query: 80  DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEA 139
           D    PD  L+N M RG+S S  P R++ L+  +L S    + Y+FPSLLKAC+ + A  
Sbjct: 73  DGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSA-- 130

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
            EE  Q+H    KLG  +++Y   +LIN YA   + + A  +F+ I EP  VS+N++I  
Sbjct: 131 FEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKG 190

Query: 200 YARSSRPNEALSLFRELQERN-------------------------------LKPTDVTM 228
           Y ++ + + AL+LFR++ E+N                               ++P +V++
Sbjct: 191 YVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSL 250

Query: 229 LSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG 288
            +ALS+CA LG+L+ GKWIH Y+ K  +     +   LIDM+AKCG +++A+ VF N+  
Sbjct: 251 ANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKK 310

Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNY 348
           K  QAW+A+I  YA HG G ++I  F EM K  + P+ ITF  +L ACS+TGLV+EG   
Sbjct: 311 KSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLI 370

Query: 349 FYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408
           FYSM   Y + P I+HYGC+VDLLGRAG LDEA RFI E+P+K   ++W  LL +C  H 
Sbjct: 371 FYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHK 430

Query: 409 NLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSI 468
           N+ L +++ E +  +D  HGG YV  +N+ A   +W+     R+LMK++GV KVPGCS+I
Sbjct: 431 NIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTI 490

Query: 469 EVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALR 528
            +     EF +GD  H     +Q     + ++L+  GYVP+   +    ++D+E+E  + 
Sbjct: 491 SLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVH 550

Query: 529 YHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            HSEKLAIT+GL+ T PGT IR++KNLRVC
Sbjct: 551 QHSEKLAITYGLIKTKPGTIIRIMKNLRVC 580



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 108/349 (30%), Positives = 174/349 (49%), Gaps = 49/349 (14%)

Query: 17  LCTNTP-NAL---SLLPRCT---SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTT 69
           LC++ P NA    SLL  C+   +F    QIHA   K   +ND+  +  LIN       T
Sbjct: 107 LCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLIN---SYAVT 163

Query: 70  SSMEHAHLLFDRIPEPDIVLFN-------------------------------TMARGYS 98
            + + AHLLFDRIPEPD V +N                               TM  GY 
Sbjct: 164 GNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYV 223

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
           ++     A+ LF E+ NS + PD+ S  + L ACA +G  ALE+GK +H +  K  +  +
Sbjct: 224 QADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLG--ALEQGKWIHSYLNKTRIRMD 281

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
             +   LI++YA+C ++E A  +F+NI +  V ++ A+I+ YA      EA+S F E+Q+
Sbjct: 282 SVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQK 341

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK-YGLDKYVKVNTALIDMHAKCGRLD 277
             +KP  +T  + L++C+  G ++ GK I   +++ Y L   ++    ++D+  + G LD
Sbjct: 342 MGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLD 401

Query: 278 DAVSVFDNMSGK-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
           +A      M  K +   W A++ A       HK+I + EE+ +  ++ D
Sbjct: 402 EAKRFIQEMPLKPNAVIWGALLKACRI----HKNIELGEEIGEILIAID 446


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/584 (40%), Positives = 349/584 (59%), Gaps = 37/584 (6%)

Query: 8   PITQSPPPKLCT--NTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQ 65
           PI  +P  +L +  N    L LL RC++   L+QIH   +KT L  D    +KL+ FC  
Sbjct: 3   PILCTPTSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCA- 61

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSF 125
           +P + S+ +A  +FDRI  P+  ++NTM RGYS SK P  A+ L+  +L   +  + Y+F
Sbjct: 62  SPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTF 121

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
           P LLKAC+ + A   EE +Q+H   IK+G  S +Y   +L+N+Y++  D+++AR +F+ +
Sbjct: 122 PFLLKACSSMSAS--EETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQV 179

Query: 186 SEPCVVSYNAIITAYAR-------------------------------SSRPNEALSLFR 214
            +   VS+N++I  Y +                               + +P EAL+LF 
Sbjct: 180 DQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFH 239

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
            +Q   +K  +V ++S L +CA LG LD GKWIH YIKK+ ++    +   LIDM+AKCG
Sbjct: 240 RMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCG 299

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
            L++A+ VF  M  K    W+AMI  YA HG+G +++  F +M  A V P+++TF G+L 
Sbjct: 300 DLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILT 359

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           ACSH GLV E    F SM   +G  P I+HYGCMVDLLGRAG L EA   I+ +P+K   
Sbjct: 360 ACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNA 419

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454
            +W  LL++C  H NL L KQ+ + + ++D  HGG Y+ L+++ A AG W     +R+ M
Sbjct: 420 AIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQM 479

Query: 455 KDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVH 514
           K++GV K+PGCS I VN    EF +GD  H    ++   L+++V+ L+  GY P    + 
Sbjct: 480 KEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDL- 538

Query: 515 HGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             D+ED+EKE A+ +HSEKLA+TFGL++T PG TIR+VKNLRVC
Sbjct: 539 LLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVC 582


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/585 (40%), Positives = 352/585 (60%), Gaps = 39/585 (6%)

Query: 6   SPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQ 65
           +PP    P P+L    P  L  L  C + + L QIHA TI T + +D  V +++++F   
Sbjct: 23  NPPWI--PTPQLLCKYP-ILRHLSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAAL 79

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLL-PDDYS 124
           +P   S+ +A  LF RI +PDI + NT+ R Y+ S  PI A+  + E+  S ++ PD ++
Sbjct: 80  SPH-GSIPYARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHT 138

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAA------ 178
           FP LLKAC+ +   +L  G+ +H    KLG +S + V   L+ +YA C  +E+A      
Sbjct: 139 FPLLLKACSEI--PSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDR 196

Query: 179 -------------------------RRIFENISEPCVVSYNAIITAYARSSRPNEALSLF 213
                                    RR+FE + +  VVS++ +I  Y + SR  E L LF
Sbjct: 197 TPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLF 256

Query: 214 RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273
           +++    ++P +  +++ALS+CA LG+++ G+WI  Y+++  +   V++ TALIDM++KC
Sbjct: 257 QDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKC 316

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
           G ++ A+ VF  M  K+  AWSAMI   A +GQG  ++ +F +M    V P+E+TF+G+L
Sbjct: 317 GSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGIL 376

Query: 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
            ACSH+ LVDEG ++F+SM   YG+ P   H+ CMVDL GRAG LD+A   I  +P K  
Sbjct: 377 NACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPN 436

Query: 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKL 453
             +W  LL++C  H +  L +QV +R+ ELD +HGG YV+LSN+ A  GRW+ V  LR++
Sbjct: 437 SAIWGALLNACRIHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRM 496

Query: 454 MKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLV 513
           M++R V K PGCS I++ + + EF +GD  H     +   L E+ +ELK  GY PDT  V
Sbjct: 497 MRERQVSKTPGCSFIDLGDTIHEFVAGDSSHPQLEMIYAKLGEMSQELKAAGYKPDTGQV 556

Query: 514 HHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
              DM++EEKE AL +HSEKLAI FGL+ T PGTTIR+ KNLRVC
Sbjct: 557 LL-DMDEEEKETALCHHSEKLAIAFGLIKTDPGTTIRITKNLRVC 600


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 216/521 (41%), Positives = 343/521 (65%), Gaps = 6/521 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           + + A  +K  L  D  VL+ LI+      +   +  A L+FD   E  +V++N +   Y
Sbjct: 140 RGVQAYAVKRGLVADRFVLSSLIHM---YASCGDVAAARLVFDAAEESGVVMWNAIVAAY 196

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            ++   +  + +F  +L  G+  D+ +  S++ AC  +G   L  GK +     + GL  
Sbjct: 197 LKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKL--GKWVAGHVDEEGLAR 254

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           N  + T L+++YA+C ++  ARR+F+ +    VV+++A+I+ Y ++ +  EAL LF E+Q
Sbjct: 255 NPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQ 314

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              ++P DVTM+S LS+CA+LG+L+ GKW+H Y+++  L     + TAL+D +AKCG +D
Sbjct: 315 LARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCID 374

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           DAV  F++M  K++  W+A+I   AT+G+G +++ +F  M +A + P ++TF+G+L ACS
Sbjct: 375 DAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACS 434

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H+ LV+EG  +F SM   YGI P ++HYGCMVDLLGRAG +DEAY+FI  +PI+   ++W
Sbjct: 435 HSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIW 494

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
           R LLSSC+ H N+G+ ++ +++I  L+ SH GDYV+LSN+ A AG+W+D   +RK MKDR
Sbjct: 495 RALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDR 554

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           G+ K PGCS IE++ VV EFF+ D  H    ++ + ++E++  +K+ GYVP+T+ V   +
Sbjct: 555 GIEKTPGCSLIELDGVVFEFFAEDSDHPELREIYQKVEEMIGRIKVAGYVPNTADVRL-E 613

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +E+ EKE+++ +HSEKLAI FGL+   PG TIR+ KNLRVC
Sbjct: 614 VEEREKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVC 654



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 118/388 (30%), Positives = 212/388 (54%), Gaps = 16/388 (4%)

Query: 37  LKQIHAVTIKT-HLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVL--FNTM 93
           L Q+HA  IK+  L         L+     +PT   + +A  LF   P P +    +N +
Sbjct: 32  LPQLHAALIKSGELTGSAKSFHSLLEAAAASPTL--LPYAVSLFRLGPRPPLSTPCYNVL 89

Query: 94  ARGYSRSKTPIRAIFLFVELLN--SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAI 151
            R +  +  P  A+ LF+E+L+  S    D ++    LK+C+ + A  L+ G+ +  +A+
Sbjct: 90  MRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCA--LDVGRGVQAYAV 147

Query: 152 KLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALS 211
           K GL ++ +V ++LI++YA C DV AAR +F+   E  VV +NAI+ AY ++    E + 
Sbjct: 148 KRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVE 207

Query: 212 LFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271
           +F+ + E  +   +VT++S +++C  +G   LGKW+  ++ + GL +  K+ TAL+DM+A
Sbjct: 208 MFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYA 267

Query: 272 KCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLG 331
           KCG +  A  +FD M  +D  AWSAMI  Y    Q  +++ +F EM  A+V P+++T + 
Sbjct: 268 KCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVS 327

Query: 332 LLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
           +L AC+  G ++ G W + Y  R +  +   +     +VD   + G +D+A    + +P+
Sbjct: 328 VLSACAVLGALETGKWVHSYVRRKRLSLTTILGT--ALVDFYAKCGCIDDAVEAFESMPV 385

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVIE 418
           K++   W  L+   +++   G  ++ +E
Sbjct: 386 KNS-WTWTALIKGMATN---GRGREALE 409


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/521 (41%), Positives = 344/521 (66%), Gaps = 6/521 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           + I A  +K  L  D  VL+ LI+      +   +  A LLFD + E  +V++N +   Y
Sbjct: 139 RGIQAYAVKRGLMADRFVLSSLIHM---YASCRDVAAAQLLFDAVEENGVVMWNAIITAY 195

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            ++   +  + +F  +L  G+  D+ +  S++ AC  +G   L  GK +  +  + GL  
Sbjct: 196 MKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKL--GKWVAEYVDEKGLVR 253

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           N  + T LI++YA+C ++  ARR+F+ +    VV+++A+I+ Y ++ +  EAL+LF E+Q
Sbjct: 254 NRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQ 313

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              ++P DVTM+S LS+CA+LG+L+ GKW+H YI++  L   + + TAL+D +AKCG +D
Sbjct: 314 LAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCID 373

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           DAV  F++M  K++  W+A+I   AT+G+G +++ +F  M KA + P ++TF+G+L ACS
Sbjct: 374 DAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACS 433

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H+ LV+EG  +F SM   YGI P  +HYGC+VDLLGRAG +DEAY+FI  +PI+   ++W
Sbjct: 434 HSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIW 493

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
           R LLSSC+ H N+ + ++ +++I  L+ SH GDY++LSN+ A  G+W++   +RK MKDR
Sbjct: 494 RALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDR 553

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           G+ K PGCS IE++ VV EFF+ D  H    ++ + ++E++  +KM GY+P+T+ V   +
Sbjct: 554 GIEKTPGCSLIELDGVVVEFFAEDSDHPQLKEIYQKVEEMIDRIKMAGYIPNTADVRL-E 612

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +++ EKE+++ +HSEKLAI FGL+   PG TIR+ KNLRVC
Sbjct: 613 VDEHEKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVC 653



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 130/422 (30%), Positives = 223/422 (52%), Gaps = 26/422 (6%)

Query: 2   ATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKT-HLQNDLNVLTKLI 60
           A  P+P      PP             P  T  R L Q+HA  IK+  L         L+
Sbjct: 8   AALPTPAGAGPAPPHA-----------PLRTDPRYLPQLHAALIKSGELTGSPKCFHSLL 56

Query: 61  NFCTQNPTTSSMEHAHLLFDRIPEPDIVL--FNTMARGYSRSKTPIRAIFLFVELLN-SG 117
                +PT   + +A  LF   P P +    +N + R    +  P  A+ LFVE+L+ + 
Sbjct: 57  EAAAASPTL--LPYAVSLFRLGPRPPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVAS 114

Query: 118 LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEA 177
           + PD ++    LK+C+ +    L+ G+ +  +A+K GL ++ +V ++LI++YA C DV A
Sbjct: 115 VCPDQHTVACALKSCSRMCT--LDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAA 172

Query: 178 ARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL 237
           A+ +F+ + E  VV +NAIITAY ++    E + +F+ + E  +   ++T++S +++C  
Sbjct: 173 AQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGR 232

Query: 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297
           +G   LGKW+ EY+ + GL +   + TALIDM+AKCG L  A  +FD M  +D  AWSAM
Sbjct: 233 IGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAM 292

Query: 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKY 356
           I  Y    Q  +++ +F EM  A+V P+++T + +L AC+  G ++ G W + Y  R + 
Sbjct: 293 ISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRL 352

Query: 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQV 416
            +   I     +VD   + G +D+A    + +P+K++   W  L+   +++   G  ++ 
Sbjct: 353 SLT--IILGTALVDFYAKCGCIDDAVEAFESMPVKNS-WTWTALIKGMATN---GRGREA 406

Query: 417 IE 418
           +E
Sbjct: 407 LE 408


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/566 (41%), Positives = 344/566 (60%), Gaps = 45/566 (7%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTS--SMEHAHLLFDRIP 83
           SL+ +  S   L QIHA  ++  L ++      ++NF  Q    +   ++ +  +F+   
Sbjct: 52  SLIDKSKSVAHLLQIHASLLRRGLYHN-----PILNFKLQRSYAALGRLDCSVFVFNTFD 106

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
           EP++  F+ +   + +S+   RA   + ++L+ G+ P+ ++F S+LK+C+      LE G
Sbjct: 107 EPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS------LESG 160

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDV---------------------------- 175
           K LHC AIKLGL S+LYV T L+++YA   DV                            
Sbjct: 161 KVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKM 220

Query: 176 ---EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232
              + AR +FE + E  VV +N +I  YA+S  PNE+L LFR +      P +VT+L+ L
Sbjct: 221 GELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVL 280

Query: 233 SSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ 292
           S+C  LG+L+ G+WIH YI+  G+   V V TALIDM++KCG L+DA  VFD +  KD  
Sbjct: 281 SACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVV 340

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
           AW++MIV YA HG    ++ +FEEM +    P +ITF+G+L AC H GLV+EG ++F  M
Sbjct: 341 AWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLM 400

Query: 353 RDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGL 412
           RDKYGI P I+HYGCMV+LLGRAG L+EAY  +  + I + P+LW TLL  C  H N+ L
Sbjct: 401 RDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKL 460

Query: 413 AKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNN 472
            +++ + + +   ++ G YV+LSN+ A  G WE V  +R LMK+ G+ K  GCSSIEV+N
Sbjct: 461 GEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDN 520

Query: 473 VVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSE 532
            V EF +G+  H  S ++   L+E+   LK  GY P T +V H D+ +E+KE +L  HSE
Sbjct: 521 KVHEFVAGERKHPKSKEIYVMLNEINSWLKARGYTPQTDVVLH-DLREEQKEQSLEVHSE 579

Query: 533 KLAITFGLLNTPPGTTIRVVKNLRVC 558
           KLAI FGL++T PGTT+++VKNLRVC
Sbjct: 580 KLAIAFGLISTKPGTTVKIVKNLRVC 605



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 159/314 (50%), Gaps = 36/314 (11%)

Query: 18  CTNTPNAL---SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINF--------CTQN 66
           C   PNA    S+L  C+   G K +H   IK  L +DL V T L++         C + 
Sbjct: 139 CGVEPNAFTFSSVLKSCSLESG-KVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQ 197

Query: 67  -----PTTS---------------SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRA 106
                P  S                ++ A  LF+ + E D+V +N M  GY++S  P  +
Sbjct: 198 LFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNES 257

Query: 107 IFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI 166
           + LF  +L +  +P++ +  ++L AC  +GA  LE G+ +H +    G+  N++V T LI
Sbjct: 258 LKLFRRMLVAKAIPNEVTVLAVLSACGQLGA--LESGRWIHSYIENKGIQINVHVGTALI 315

Query: 167 NLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV 226
           ++Y++C  +E AR +F+ I +  VV++N++I  YA       AL LF E+ E   KPTD+
Sbjct: 316 DMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDI 375

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIK-KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285
           T +  LS+C   G ++ G+     ++ KYG++  ++    ++++  + G L++A  +  N
Sbjct: 376 TFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKN 435

Query: 286 MS-GKDTQAWSAMI 298
           M+   D   W  ++
Sbjct: 436 MTIAADPVLWGTLL 449


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/548 (41%), Positives = 345/548 (62%), Gaps = 12/548 (2%)

Query: 17  LCTNTPNALS-----LLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSS 71
           LC N P         L    ++   + Q+ +  I  ++  D   L KLI+F     ++  
Sbjct: 34  LCENPPQITESKHSHLTKSISNHAHMNQMLSQMIMNYIPIDHLNLMKLIDFSV---SSHG 90

Query: 72  MEHAHLLFDRIPE-PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130
              + LLF +     D  L N+M R Y+ S   + ++F++ ++  +G+ PD  +FP++LK
Sbjct: 91  FAASALLFTQFYGFIDSDLCNSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLK 150

Query: 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV 190
           + A +  + L  GK +HC  I++G  SN+YV T L+N+Y  CS V  AR++F+ I +  +
Sbjct: 151 SVAQLCRQEL--GKAIHCCIIQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNI 208

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY 250
           VS+NA+IT Y  +    + + +FRE+Q    KP +VTM+  L +CA LG+L+ G+WI +Y
Sbjct: 209 VSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDY 268

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310
           I    L   V V TALIDM+AKCG +D+A  +F  M  K+   W+ +I  YA +G+G  +
Sbjct: 269 IDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESA 328

Query: 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370
           +  F  M+  +  PDE+TFLG+L AC H GLV+EG  YF SM++++G+ P I+HYGCMVD
Sbjct: 329 LQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVD 388

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430
           LLGRAG LDEA + I  + ++  PI+WR LL +C  H N+ L +  I+++ EL+ ++G +
Sbjct: 389 LLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGEN 448

Query: 431 YVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDL 490
           YV+L+NL AR  RW+ V  +R++M  R V KVPGCSSIE++NVV EF   + +     ++
Sbjct: 449 YVLLANLYARDQRWDKVGEVREMMDCRRVRKVPGCSSIEIDNVVYEFVVSNYIKPGFEEV 508

Query: 491 QKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIR 550
            K L ++ K+LK+ GYV DT +  + D+E+EEKE +L YHSEKLA+ FGLL +P G T+R
Sbjct: 509 YKLLADMNKKLKLAGYVADTGMASY-DIEEEEKEHSLMYHSEKLALAFGLLKSPSGLTLR 567

Query: 551 VVKNLRVC 558
           +VKNLR+C
Sbjct: 568 IVKNLRIC 575


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/553 (42%), Positives = 339/553 (61%), Gaps = 23/553 (4%)

Query: 8   PITQSPPPKLCT--NTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQ 65
           PI  +P  +L +  N    L LL RC++   L+QIH   +KT L  D    +KL+ FC  
Sbjct: 3   PILCTPTSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCA- 61

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSF 125
           +P + S+ +A  +FDRI  P+  ++NTM RGYS SK P  A+ L+  +L   +  + Y+F
Sbjct: 62  SPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTF 121

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
           P LLKAC+ + A  LEE +Q+H   IK+G  S +Y   +L+N+Y++  D+++AR +F+ +
Sbjct: 122 PFLLKACSSMSA--LEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQV 179

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245
            +                 R  EAL+LF  +Q   +K  +V ++S L +CA LG LD GK
Sbjct: 180 DQ-----------------RDTEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGK 222

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
           WIH YIKK+ ++    +   LIDM+AKCG L++A+ VF  M  K    W+AMI  YA HG
Sbjct: 223 WIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHG 282

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY 365
           +G +++  F +M  A V P+++TF G+L ACSH GLV E    F SM   +G  P I+HY
Sbjct: 283 RGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHY 342

Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
           GCMVDLLGRAG L EA   I+ +P+K    +W  LL++C  H NL L KQ+ + + ++D 
Sbjct: 343 GCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDP 402

Query: 426 SHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHS 485
            HGG Y+ L+++ A AG W     +R+ MK++GV K+PGCS I VN    EF +GD  H 
Sbjct: 403 GHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHP 462

Query: 486 YSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPP 545
              ++   L+++V+ L+  GY P    +   D+ED+EKE A+ +HSEKLA+TFGL++T P
Sbjct: 463 QIKEIDHMLEQIVERLREEGYKPKLGDL-LLDLEDKEKETAIHHHSEKLAVTFGLISTKP 521

Query: 546 GTTIRVVKNLRVC 558
           G TIR+VKNLRVC
Sbjct: 522 GMTIRIVKNLRVC 534


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/548 (41%), Positives = 334/548 (60%), Gaps = 12/548 (2%)

Query: 18  CTNTPNAL----SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTS 70
           C N   A     +LL RCT    L   K IHA+ + +  ++DL +   L+N   +     
Sbjct: 8   CKNNAGAREICHTLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAK---CG 64

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130
            + +A  LFD +   D+V +  +  GYS+   P  A+ L  E+L  GL P+ ++  SLLK
Sbjct: 65  DLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLK 124

Query: 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV 190
           A + VG+  + +G+QLH   ++ G +SN+YV   ++++YA C  +E A+ IF+ +     
Sbjct: 125 AASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNE 184

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY 250
           VS+NA+I  YAR  + ++A  LF  +   N+KPT  T  S L +CA +GSL+ GKW+H  
Sbjct: 185 VSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHAL 244

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310
           + K+G      V   L+DM+AK G ++DA  VFD ++ +D  +W++M+  Y+ HG G  +
Sbjct: 245 MIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVA 304

Query: 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370
           +  FEEM++ +++P++ITFL +L ACSH GL+DEG +YF  M  KY + P I HY  MVD
Sbjct: 305 LQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYF-DMMKKYNVEPQISHYVTMVD 363

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430
           LLGRAG LD A +FI E+PIK T  +W  LL +C  H N+ L     E IFELD  + G 
Sbjct: 364 LLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGT 423

Query: 431 YVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDL 490
           +V+L N+ A AGRW D   +RK+MK+ GV K P CS +E+ N V  F + D  H    ++
Sbjct: 424 HVLLYNIYALAGRWNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREI 483

Query: 491 QKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIR 550
               +++  ++K +GYVPD+S V    M+ +E+E  L+YHSEKLA+ F LLNTPPG+TIR
Sbjct: 484 HNMWEQISDKIKEIGYVPDSSHVLLC-MDQQEREAKLQYHSEKLALAFALLNTPPGSTIR 542

Query: 551 VVKNLRVC 558
           + KN+R+C
Sbjct: 543 IKKNIRIC 550


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/565 (40%), Positives = 339/565 (60%), Gaps = 45/565 (7%)

Query: 27  LLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTS--SMEHAHLLFDRIPE 84
           L+ +  +   L QIHAV  +  L +       ++NF  Q    S   ++++  LF R   
Sbjct: 36  LIDKSKTISHLLQIHAVLFRHGLDHH-----PILNFKLQRSYASLGRLDYSVALFGRTQN 90

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
           P +  +  +  G++      +A+  + ++L  G+ P+ ++F S+LK C       +E GK
Sbjct: 91  PSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP------IEPGK 144

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR-- 202
            LH  A+KLG +S+LYV T L+++YA   DV +A+++F+ + E  +VS  A++T YA+  
Sbjct: 145 ALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHG 204

Query: 203 -----------------------------SSRPNEALSLFRELQERNLKPTDVTMLSALS 233
                                        +  PNEAL LFR + +   KP +VT+LS LS
Sbjct: 205 ELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLS 264

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
           +C  LG+L+ G+W+H YI+  G+   V V TAL+DM++KCG L+DA  VFD +  KD  A
Sbjct: 265 ACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVA 324

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           W++MIV YA HG   +++ +F+ M +  + P  ITF+G+L AC H+G V EGW+ F  M+
Sbjct: 325 WNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMK 384

Query: 354 DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413
           D+YGI P I+HYGCMV+LLGRAG +++AY  +  + I+  P+LW TLL +C  H  + L 
Sbjct: 385 DEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALG 444

Query: 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNV 473
           ++++E + + + ++ G Y++LSN+ A  G W+ V  LR +MKD GV K PGCSSIEVNN 
Sbjct: 445 EKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNK 504

Query: 474 VREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEK 533
           V EF +G   H    ++   L+E+   LK  GY P T +V H D+ + EKE +L  HSEK
Sbjct: 505 VHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLH-DIGETEKERSLEVHSEK 563

Query: 534 LAITFGLLNTPPGTTIRVVKNLRVC 558
           LAI FGL+NT PGTTI++VKNLRVC
Sbjct: 564 LAIAFGLINTQPGTTIKIVKNLRVC 588


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/542 (40%), Positives = 335/542 (61%), Gaps = 9/542 (1%)

Query: 20  NTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N+   +S++P C     L   KQIH   I++ +++D+ V+  L+N   +     ++  AH
Sbjct: 220 NSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAK---CGNVNTAH 276

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            LF+R+P  D+  +N +  GYS +     A+  F  +   G+ P+  +  S+L ACA + 
Sbjct: 277 KLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHL- 335

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
             ALE+G+Q+H +AI+ G  SN  V   L+N+YA+C +V +A ++FE + +  VV++NAI
Sbjct: 336 -FALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAI 394

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           I+ Y++   P+EAL+LF E+Q + +KP    ++S L +CA   +L+ GK IH Y  + G 
Sbjct: 395 ISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGF 454

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
           +  V V T L+D++AKCG ++ A  +F+ M  +D  +W+ MI+AY  HG G  ++ +F +
Sbjct: 455 ESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSK 514

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M +     D I F  +L ACSH GLVD+G  YF  M+  YG+ P ++HY C+VDLLGRAG
Sbjct: 515 MQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAG 574

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSN 436
            LDEA   I  + ++    +W  LL +C  H N+ L +Q  + +FELD  + G YV+LSN
Sbjct: 575 HLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSN 634

Query: 437 LCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDE 496
           + A A RWEDV  LRK+MK++GV K PGCS + V+  V+ F  GD  H  S  +   L+ 
Sbjct: 635 IYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEI 694

Query: 497 LVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLR 556
           L ++++  GYVP+T+L    D+E+E KE  L  HSEKLAI+FG++NT PG  IR++KNLR
Sbjct: 695 LYEQMRKAGYVPNTNLALQ-DVEEEAKENILSSHSEKLAISFGIINTSPGIPIRIMKNLR 753

Query: 557 VC 558
           VC
Sbjct: 754 VC 755



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 191/326 (58%), Gaps = 8/326 (2%)

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEA-LEEGK 144
           + V++     GY ++    +A+ L+ ++  +G+ PD   F S++KAC   G+++ L+ G+
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKAC---GSQSDLQAGR 140

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           ++H   I  G  S++ V T L ++Y +C  +E AR++F+ + +  VVS+NAII  Y+++ 
Sbjct: 141 KVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNG 200

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
           +P EAL+LF E+Q   +KP   T++S +  CA L +L+ GK IH Y  + G++  V V  
Sbjct: 201 QPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVN 260

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
            L++M+AKCG ++ A  +F+ M  +D  +W+A+I  Y+ + Q H+++  F  M    + P
Sbjct: 261 GLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKP 320

Query: 325 DEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
           + IT + +L AC+H   +++G   + Y++R  +     + +   +V++  + G ++ AY+
Sbjct: 321 NSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGN--ALVNMYAKCGNVNSAYK 378

Query: 384 FIDELPIKSTPILWRTLLSSCSSHNN 409
             + +P K+  + W  ++S  S H +
Sbjct: 379 LFERMPKKNV-VAWNAIISGYSQHGH 403


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 244/577 (42%), Positives = 345/577 (59%), Gaps = 38/577 (6%)

Query: 17  LCTNTPNALS---LLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNP--- 67
           LC   PN+ +   LL  C         KQIH   +K  L++D  V T LIN   QN    
Sbjct: 125 LCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELG 184

Query: 68  ------TTSSM-------------------EHAHLLFDRIPEPDIVLFNTMARGYSRSKT 102
                 + SS+                   + A  LF+ IP  D V +N M  GY++S  
Sbjct: 185 YAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGR 244

Query: 103 PIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVC 162
              A+  F E+  + + P++ +  ++L ACA  G+  LE G  +  +    GL SNL + 
Sbjct: 245 FEEALAFFQEMKRANVAPNESTMVTVLSACAQSGS--LELGNWVRSWIEDHGLGSNLRLV 302

Query: 163 TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK 222
             LI++Y++C D++ AR +FE I E  ++S+N +I  Y+  +   EAL+LFR++Q+ N++
Sbjct: 303 NALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVE 362

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD-KYVKVNTALIDMHAKCGRLDDAVS 281
           P DVT +S L +CA LG+LDLGKWIH YI K  L      + T+LIDM+AKCG ++ A  
Sbjct: 363 PNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQ 422

Query: 282 VFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341
           VF  M  K   +W+AMI   A HG  + ++ +F +M      PD+ITF+G+L ACSH GL
Sbjct: 423 VFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGL 482

Query: 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
           V+ G   F SM + Y I P ++HYGCM+DLLGRAG  DEA   +  + +K    +W +LL
Sbjct: 483 VELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLL 542

Query: 402 SSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLK 461
            +C  H N+ L +   + +FEL+  + G YV+LSN+ A AGRW+DV  +R  + D+G+ K
Sbjct: 543 GACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKK 602

Query: 462 VPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDE 521
           VPGCSSIEV++VV EF  GD VH  S D+ K LDE+ + L+  G+VPDTS V + DM++E
Sbjct: 603 VPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLY-DMDEE 661

Query: 522 EKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            KE +L +HSEKLAI FGL++T P TTIR+VKNLRVC
Sbjct: 662 WKEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLRVC 698



 Score =  285 bits (729), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 166/469 (35%), Positives = 268/469 (57%), Gaps = 45/469 (9%)

Query: 10  TQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTT 69
           T  PP KL  N P +L+LL  C SF+ LKQIH+  IKT L N    L+KLI FC  +P  
Sbjct: 22  TSDPPYKLLQNHP-SLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPF- 79

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
            ++ +A LLF+ I +P+  ++NTM RG S S +P+ AI  +V +L  G+ P+ Y+FP LL
Sbjct: 80  GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLL 139

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD--------------- 174
           K+CA VGA   +EGKQ+H   +KLGL S+ +V T+LIN+YA+  +               
Sbjct: 140 KSCAKVGAT--QEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRD 197

Query: 175 ----------------VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
                           ++ ARR+FE I     VS+NA+I  YA+S R  EAL+ F+E++ 
Sbjct: 198 AVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKR 257

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
            N+ P + TM++ LS+CA  GSL+LG W+  +I+ +GL   +++  ALIDM++KCG LD 
Sbjct: 258 ANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDK 317

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A  +F+ +  KD  +W+ MI  Y+      +++ +F +M ++ V P+++TF+ +L AC++
Sbjct: 318 ARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAY 377

Query: 339 TGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
            G +D G W + Y +  K+  +     +  ++D+  + G ++ A +    +  KS    W
Sbjct: 378 LGALDLGKWIHAY-IDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGS-W 435

Query: 398 RTLLSSCSSHNNLGLA----KQVIERIFELDDSHGGDYVILSNLCARAG 442
             ++S  + H +  +A    +Q+ +  FE DD     +V + + C+ AG
Sbjct: 436 NAMISGLAMHGHANMALELFRQMRDEGFEPDDI---TFVGVLSACSHAG 481


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/549 (41%), Positives = 334/549 (60%), Gaps = 31/549 (5%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSS-------------------------- 71
           KQIHA  +K    +D+ + T LIN   Q+   ++                          
Sbjct: 149 KQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALW 208

Query: 72  --MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
             M+ A  LFD +P  D+V +N M  GY++      A+ LF ++  + + P++ +  S+L
Sbjct: 209 GYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVL 268

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC 189
            ACA   + AL+ G  +  +    GL SNL +   LI++Y++C D++ AR +F+++ E  
Sbjct: 269 SACA--QSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERD 326

Query: 190 VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           V+S+N +I  Y       EAL+LFRE+    ++PT++T LS L SCA LG++DLGKWIH 
Sbjct: 327 VISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHA 386

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
           YI K        ++T+LID++AKCG +  A  VFD M  K   +W+AMI   A HGQ  K
Sbjct: 387 YINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADK 446

Query: 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369
           +  +F +M    + P+EITF+G+L AC H GLVD G  +F SM   Y I P  +HYGCM+
Sbjct: 447 AFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMI 506

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429
           DLLGRAG  +EA   +  + +K    +W +LL +C  H  + L + V ER+FEL+  + G
Sbjct: 507 DLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPG 566

Query: 430 DYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTD 489
            YV+LSN+ A AG+W+DV  +R  + DRG+ KVPGC++IEV+NVV EF  GD VH  S D
Sbjct: 567 AYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSED 626

Query: 490 LQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTI 549
           + + L+E+ ++LK+ G+V DTS V + DM++E KE AL +HSEKLAI FGL++T PGT I
Sbjct: 627 IYRMLEEVDEQLKVFGFVADTSEVLY-DMDEEWKEGALSHHSEKLAIAFGLISTKPGTPI 685

Query: 550 RVVKNLRVC 558
           R++KNLRVC
Sbjct: 686 RIIKNLRVC 694



 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 146/442 (33%), Positives = 240/442 (54%), Gaps = 37/442 (8%)

Query: 10  TQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTT 69
           +  PP ++    P +L LL +C S R  KQIHA  IKT L N L  L+KLI F   +  +
Sbjct: 19  SSDPPYRVLQEHP-SLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVS-RS 76

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
             + +A  LF+ I EP++ ++N+M RG S S +P  A+  FV ++ SG+ P+ Y+FP LL
Sbjct: 77  GDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLL 136

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD--------------- 174
           K+CA + +    EGKQ+H   +KLG  S++++ T+LIN+YA+  +               
Sbjct: 137 KSCAKLASA--HEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRD 194

Query: 175 ----------------VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
                           ++ AR++F+ +    VVS+NA+I  YA+  R  EAL LF ++++
Sbjct: 195 AISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRK 254

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
            N+ P + T++S LS+CA   +LDLG  +  +I+  GL   +K+  ALIDM++KCG L  
Sbjct: 255 ANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQT 314

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A  +FD+M  +D  +W+ MI  Y       +++ +F EM+ + V P EITFL +L +C+H
Sbjct: 315 ARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAH 374

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
            G +D G  + ++  +K            ++DL  + G +  A +  D + IKS    W 
Sbjct: 375 LGAIDLG-KWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLAS-WN 432

Query: 399 TLLSSCSSHNNLGLAKQVIERI 420
            ++   + H     A ++  ++
Sbjct: 433 AMICGLAMHGQADKAFELFSKM 454


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/537 (42%), Positives = 350/537 (65%), Gaps = 11/537 (2%)

Query: 27  LLPRCTSFRGLKQIHAVTIKTHLQNDLNV---LTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           L+ +C S R L+QIHA  + TH     ++   L K+I FC  +P    +++A  LF +I 
Sbjct: 63  LIRKCRSMRVLRQIHA-RLLTHAMPISSISFGLCKIIGFCALSPY-GDIDYARKLFSQIQ 120

Query: 84  EPDIVLFNTMARGYSRSKTPIRA-IFLFVELLNSGLL-PDDYSFPSLLKACACVGAEALE 141
            P+I  +N+M RG S+S+TP +  + LF +++  G   P+ ++   +LKAC+ V A  LE
Sbjct: 121 RPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSA--LE 178

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           EG+Q+H   +K G  S+ +V T L+N YA+C D+  A ++F+ I++  +V+++ +I+ YA
Sbjct: 179 EGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYA 238

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           R    NEAL LFR++Q+  + P +VTM+S +S+CA  G+LD GKW+H YI K  ++  ++
Sbjct: 239 RIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLE 298

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           ++TAL++M+AKCG ++ A  VFD M  KDT+AWS+MIV  A +G    ++  F  M +A+
Sbjct: 299 LSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAK 358

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           V P+ +TF+G+L AC+H+GLV EG  Y+ SM + +GIVP ++ YGCMVDLL RA  +++A
Sbjct: 359 VKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLE-FGIVPSMELYGCMVDLLCRASLVEDA 417

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
              ++ +PI   P++WRTLL  C    NL  ++ V +R+ EL+  +  +Y++LSNL A  
Sbjct: 418 CTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASM 477

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
            +WE +  +RK MK  G+  VPGCSSIEV+ +V EF  GD  H  + ++++ L ++ K +
Sbjct: 478 SQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRV 537

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             VG+ P  S V H ++ DEEKE AL  HSE+LAI +GLL T     IR+VKNLRVC
Sbjct: 538 HAVGHQPGISDVLH-NVVDEEKENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVC 593


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/559 (39%), Positives = 341/559 (61%), Gaps = 28/559 (5%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           P+ L    + +  R  K+IH  ++K  L +D+ V+  L+   ++     S+  A LLFD+
Sbjct: 113 PSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSE---CGSLVSARLLFDK 169

Query: 82  IPEPDIVLFNTMARGY--------SRSKTPIRAIF--------------LFVELLNSGLL 119
           + E D+V ++TM R Y         RS     A+               LFV ++   + 
Sbjct: 170 MSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVF 229

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179
           P+D +  SL+ +C  VGA  L  GK+LH + ++ G   +L + T L+++Y +C ++ +AR
Sbjct: 230 PNDITMLSLIISCGFVGAVQL--GKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSAR 287

Query: 180 RIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG 239
            IF+++    V+++ A+I+AYA+++  + A  LF ++++  ++P ++TM+S LS CA+ G
Sbjct: 288 AIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNG 347

Query: 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIV 299
           +LD+GKW H YI K G++  V + TALIDM+AKCG +  A  +F     +D   W+ M+ 
Sbjct: 348 ALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMA 407

Query: 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359
            Y  HG G K++ +F EM    V P++ITF+G L+ACSH GLV EG   F  M   +G+V
Sbjct: 408 GYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLV 467

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIER 419
           P ++HYGCMVDLLGRAG LDEAY+ I+ +P+     +W  +L++C  H N  + +     
Sbjct: 468 PKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAARE 527

Query: 420 IFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFS 479
           +  L+  + G  V++SN+ A A RW DV  +RK +KD G+ K PG SSIEVN +V +F  
Sbjct: 528 LLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGLVHDFKM 587

Query: 480 GDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFG 539
           GD  H     + + L E+ K+LK  GY+PDTS+V H ++++EEKE AL YHSEKLA+ FG
Sbjct: 588 GDTAHPLIEKISEMLAEMSKKLKEAGYLPDTSVVLH-NIDEEEKETALNYHSEKLAMAFG 646

Query: 540 LLNTPPGTTIRVVKNLRVC 558
           L++T PGT IRVVKNLR+C
Sbjct: 647 LISTAPGTPIRVVKNLRIC 665



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 168/326 (51%), Gaps = 29/326 (8%)

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           D +  PS+LKAC+ +    +  GK++H F++K GL S+++V   L+ +Y+EC  + +AR 
Sbjct: 108 DSFIIPSVLKACSQISVARM--GKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARL 165

Query: 181 IFENISE----------------------PCVVSYNAIITAYARSSRPNEALSLFRELQE 218
           +F+ +SE                        +VS+ A+I  Y R +   E   LF  + E
Sbjct: 166 LFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIE 225

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
            N+ P D+TMLS + SC  +G++ LGK +H YI + G    + + TAL+DM+ KCG +  
Sbjct: 226 ENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRS 285

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A ++FD+M  KD   W+AMI AYA       +  +F +M    V P+E+T + LL  C+ 
Sbjct: 286 ARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAV 345

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
            G +D G  +F++  DK G+   +     ++D+  + G +  A R   E  I      W 
Sbjct: 346 NGALDMG-KWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSE-AIDRDICTWN 403

Query: 399 TLLSSCSSHNNLGLAKQVIERIFELD 424
            +++    H   G  ++ ++   E++
Sbjct: 404 VMMAGYGMH---GYGEKALKLFTEME 426



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 160/354 (45%), Gaps = 56/354 (15%)

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
           S P  AL+ +  +++ +++     + S L +C+ +    +GK IH +  K GL   V V 
Sbjct: 88  SHPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVV 147

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT--HGQGHKSIL--------- 312
            AL+ M+++CG L  A  +FD MS +D  +WS MI AY T  +G   +SI+         
Sbjct: 148 NALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGY 207

Query: 313 -----------MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVP 360
                      +F  M++  V P++IT L L+ +C   G V  G   + Y +R+ +G+  
Sbjct: 208 IRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSL 267

Query: 361 GIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
            +     +VD+ G+ G +  A    D +  K   + W  ++S+ +  N +  A Q+  ++
Sbjct: 268 ALA--TALVDMYGKCGEIRSARAIFDSMKNKDV-MTWTAMISAYAQANCIDYAFQLFVQM 324

Query: 421 FELDDSHGGDYVILS--NLCARAGRWEDVDYLRKLMKDRGV-----LK------------ 461
            + +     +  ++S  +LCA  G  +   +    +  +GV     LK            
Sbjct: 325 RD-NGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGD 383

Query: 462 VPGCSSIEVNNVVRE------FFSGDGVHSYSTDLQKALDELVKELKMVGYVPD 509
           + G   +    + R+        +G G+H Y    +KAL +L  E++ +G  P+
Sbjct: 384 ISGAQRLFSEAIDRDICTWNVMMAGYGMHGYG---EKAL-KLFTEMETLGVKPN 433


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/560 (40%), Positives = 335/560 (59%), Gaps = 33/560 (5%)

Query: 30  RCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVL 89
           RC+    LKQIHA  +KT L  D   +TK ++ C  + ++  + +A ++FD    PD  L
Sbjct: 52  RCSKQEELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFL 111

Query: 90  FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCF 149
           +N M RG+S S  P R++ L+  +L      + Y+FPSLLKAC+ + A  LEE  Q+H  
Sbjct: 112 WNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSA--LEETTQIHAQ 169

Query: 150 AIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEA 209
             KLG  +++Y   +LIN YA   + + A  +F+ I +P  VS+N++I  YA++ + + A
Sbjct: 170 ITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIA 229

Query: 210 LSLFRELQERN-------------------------------LKPTDVTMLSALSSCALL 238
           L+LFR++ E+N                               ++P +V++ +ALS+CA L
Sbjct: 230 LTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQL 289

Query: 239 GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMI 298
           G+L+ GKWIH Y+ K  +     +   LIDM+AKCG + +A+ VF N+  K  QAW+A+I
Sbjct: 290 GALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALI 349

Query: 299 VAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGI 358
             YA HG G ++I  F EM K  + P+ ITF  +L ACS+TGLV+EG   FY+M   Y +
Sbjct: 350 SGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNL 409

Query: 359 VPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
            P I+HYGC+VDLL RAG LDEA RFI E+P+K   ++W  LL +C  H N+ L +++ E
Sbjct: 410 KPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGE 469

Query: 419 RIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFF 478
            +  +D  HGG YV  +N+ A   +W+     R+LMK++GV KVPGCS+I +     EF 
Sbjct: 470 ILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFL 529

Query: 479 SGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITF 538
           +GD  H     +Q     + ++L+  GYVP+   +    ++D+E+E  +  HSEKLAIT+
Sbjct: 530 AGDRSHPEIEKIQSKWKIMRRKLEENGYVPELEDMLLDLVDDDERETIVHQHSEKLAITY 589

Query: 539 GLLNTPPGTTIRVVKNLRVC 558
           GL+ T PGTTIR++KNLRVC
Sbjct: 590 GLIKTKPGTTIRIMKNLRVC 609



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 177/349 (50%), Gaps = 49/349 (14%)

Query: 17  LCTNTP-NAL---SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTT 69
           LC + P NA    SLL  C++   L+   QIHA   K   +ND+  +  LIN       T
Sbjct: 136 LCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAVNSLIN---SYAAT 192

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRS---------------KTPI---------- 104
            + + AHLLFDRIP+PD V +N++ +GY+++               K  I          
Sbjct: 193 GNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYV 252

Query: 105 ------RAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
                  A+ LF E+ NS + PD+ S  + L ACA +G  ALE+GK +H +  K  +  +
Sbjct: 253 QAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLG--ALEQGKWIHSYLTKTRIRMD 310

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
             +   LI++YA+C D+  A  +F+NI    V ++ A+I+ YA      EA+S F E+Q+
Sbjct: 311 SVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQK 370

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK-YGLDKYVKVNTALIDMHAKCGRLD 277
             +KP  +T  + L++C+  G ++ GK I   +++ Y L   ++    ++D+ ++ G LD
Sbjct: 371 MGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLD 430

Query: 278 DAVSVFDNMSGK-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
           +A      M  K +   W A++ A       HK+I + EE+ +  ++ D
Sbjct: 431 EAKRFIQEMPLKPNAVIWGALLKACRI----HKNIELGEEIGEILIAID 475


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/554 (40%), Positives = 352/554 (63%), Gaps = 12/554 (2%)

Query: 10  TQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTT 69
           + +P P+      N L+LL  C +   L QIH   +K  L N+  VLTK  +  +    T
Sbjct: 20  SSTPNPR--APEQNCLALLQACNALPKLTQIHTHILKLGLHNNPLVLTKFASISSLIHAT 77

Query: 70  SSMEHAHLLFDRIPEP---DIVLFNTMARGYSRS-KTPIRAIFLFVELLNSGLLPDDYSF 125
                A  LF    +    D  LFNT+ R Y+++  +  +A+ L+  +L+  +LP+ +++
Sbjct: 78  DYA--ASFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTY 135

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD-VEAARRIFEN 184
           P +LKACA  G E L  G+ +H   +K G + +++V  T++++Y+ C+  + +AR++F+ 
Sbjct: 136 PFVLKACA--GLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDE 193

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
           + +   V+++A+I  YAR  R  EA++LFRE+Q   + P ++TM+S LS+C  LG+L+LG
Sbjct: 194 MPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELG 253

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
           KWI  YI+++ + K V+V+ ALIDM AKCG +  A+ +F  M+ K   +W+++IV  A H
Sbjct: 254 KWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMH 313

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364
           G+G ++  +FEEM  + V+PD++ F+GLL ACSH+GLV+ G  YF SM  KY +VP I+H
Sbjct: 314 GRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEH 373

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
           YGCMVD+  R G + EA  F+  +PI+  P++ RTL+S+C  H    L +++ + + + +
Sbjct: 374 YGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHE 433

Query: 425 DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVH 484
             H  +YV+LSN+ A+   WE    +R++M+ +G+ KVPG + IE++N + EF +GD  H
Sbjct: 434 PLHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSH 493

Query: 485 SYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTP 544
               ++ + +DE+ +E+K  GY P TS V   D+ +E+KE +L  HSEKLAI FGLL TP
Sbjct: 494 KQHKEIYEMVDEMGREMKKSGYRPSTSEVLL-DINEEDKEDSLNRHSEKLAIAFGLLRTP 552

Query: 545 PGTTIRVVKNLRVC 558
           PGT IR+VKNLRVC
Sbjct: 553 PGTPIRIVKNLRVC 566


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/567 (40%), Positives = 341/567 (60%), Gaps = 43/567 (7%)

Query: 30  RCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVL 89
           +C S   L+Q H+  I+  L +  +++  LINFC +  T+ ++ +A  LFD IP+PD  L
Sbjct: 31  KCQSMSQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDAFL 90

Query: 90  FNTMARGYSRSKT-PIRAIFL-FVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLH 147
           +NT+ +G+  S+  P  +I L +  +L + +LP++++FPSLL AC       ++ G Q+H
Sbjct: 91  YNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIAC-----RKIQHGMQIH 145

Query: 148 CFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY-------------- 193
               K G  ++     +LI++Y     +E ARR+F  I  P  VS+              
Sbjct: 146 AHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLID 205

Query: 194 -----------------NAIITAYARSSRPNEALSLFRELQERNLKPTD-VTMLSALSSC 235
                            NA++ AY +++R +EA +LF  ++  N    D     + LS+C
Sbjct: 206 EAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSAC 265

Query: 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS--GKDTQA 293
             LG+LD GKWIHEYIK+ G++   K+ TA++DM+ KCG L+ A+ VF ++    +   +
Sbjct: 266 TGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISS 325

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           W+ MI   A HG G  +I +F+EM + +V+PD+ITFL LL AC+H+GLV+EG NYF  M 
Sbjct: 326 WNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMI 385

Query: 354 DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413
             YGI P ++H+GCMVDLLGRAG + EA + IDE+P+     +  TLL +C  H N+ L 
Sbjct: 386 RVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGACKKHRNIELG 445

Query: 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNV 473
           +++  R+ EL+ ++ G YV+L+NL A AG+WED   +RKLM DRGV K PG S IE+   
Sbjct: 446 EEIGRRVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMIELQGT 505

Query: 474 VREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEK--EIALRYHS 531
           V EF +G+  H  + +L   + E+++ LK VGYV DT+ V HG   DEE+  E  L YHS
Sbjct: 506 VHEFIAGERNHPQAKELHAKVYEMLEHLKSVGYVADTNGVLHGHDFDEEEDGENPLYYHS 565

Query: 532 EKLAITFGLLNTPPGTTIRVVKNLRVC 558
           EKLAI FGL  T PG T+R++KNLR+C
Sbjct: 566 EKLAIAFGLSRTKPGETLRILKNLRIC 592


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/566 (41%), Positives = 328/566 (57%), Gaps = 35/566 (6%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQN---------------- 66
           S+   CT  RG    KQ+HA  +K  L+++  V T LIN   QN                
Sbjct: 133 SIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMR 192

Query: 67  ------------PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL 114
                        +   ++ A  LFD IP  D+V +N M  GY++S     A+  F E+ 
Sbjct: 193 DAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMR 252

Query: 115 NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174
            + + P+  +  S+L ACA  G+ +L+ G  +  +    GL SN+ +   LI++Y +C D
Sbjct: 253 RAKVTPNVSTMLSVLSACAQSGS-SLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGD 311

Query: 175 VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSS 234
           +E A  +FE I +  VVS+N +I  Y   S   EAL LFR + + N+ P DVT LS L +
Sbjct: 312 LEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPA 371

Query: 235 CALLGSLDLGKWIHEYIKK--YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ 292
           CA LG+LDLGKW+H Y+ K    +   V + T+LIDM+AKCG L  A  +FD M+ K   
Sbjct: 372 CANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLA 431

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
            W+AMI  +A HG    ++ +F  M      PD+ITF+G+L AC H GL+  G  YF SM
Sbjct: 432 TWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSM 491

Query: 353 RDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGL 412
              Y + P + HYGCM+DL GRAG  DEA   +  + +K    +W +LL +C  H  + L
Sbjct: 492 IQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIEL 551

Query: 413 AKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNN 472
           A+ V + +FEL+  +   YV+LSN+ A AGRWEDV  +R  + D  + KVPGCSSIEV++
Sbjct: 552 AESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDS 611

Query: 473 VVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSE 532
           VV EF  GD VH  S ++ K LDE+   L+  G+VPDTS V + DM++E KE  L +HSE
Sbjct: 612 VVHEFLVGDKVHPQSNEIYKMLDEIDMRLEKAGFVPDTSEVLY-DMDEEWKEGVLSHHSE 670

Query: 533 KLAITFGLLNTPPGTTIRVVKNLRVC 558
           KLAI FGL++T PGTTIR++KNLRVC
Sbjct: 671 KLAIAFGLISTKPGTTIRIMKNLRVC 696



 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 159/469 (33%), Positives = 253/469 (53%), Gaps = 47/469 (10%)

Query: 12  SPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSS 71
           SPP KL  + P +L+LL  C + + LKQIH+  IKT L N    L+KLI FC  +P    
Sbjct: 20  SPPYKLVHDHP-SLTLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPH-GD 77

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           + +A  LF  I  P+ V++N M RG S S++P  A+  +V +++SG  P++Y+FPS+ K+
Sbjct: 78  LSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKS 137

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD----------------- 174
           C  +      EGKQ+H   +KLGL  N +V T+LIN+YA+  +                 
Sbjct: 138 CTKI--RGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAV 195

Query: 175 --------------VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN 220
                         ++ AR +F+ I    VVS+NA+I+ YA+S R  EA++ F E++   
Sbjct: 196 SFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAK 255

Query: 221 LKPTDVTMLSALSSCALLG-SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
           + P   TMLS LS+CA  G SL LG W+  +I+  GL   +++   LIDM+ KCG L++A
Sbjct: 256 VTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEA 315

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL-MFEEMMKAQVSPDEITFLGLLYACSH 338
            ++F+ +  K+  +W+ MI  Y TH   +K  L +F  MM++ + P+++TFL +L AC++
Sbjct: 316 SNLFEKIQDKNVVSWNVMIGGY-THMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACAN 374

Query: 339 TGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
            G +D G W + Y  ++   +   +  +  ++D+  + G L  A R  D +  KS    W
Sbjct: 375 LGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLAT-W 433

Query: 398 RTLLSSCSSHNN----LGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
             ++S  + H +    LGL  ++    F  DD     +V +   C  AG
Sbjct: 434 NAMISGFAMHGHTDTALGLFSRMTSEGFVPDDI---TFVGVLTACKHAG 479


>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 558

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/522 (41%), Positives = 336/522 (64%), Gaps = 11/522 (2%)

Query: 39  QIHAVTIKTHLQND-LNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           ++H   IK+  QND L++ T L++     P   S+ +A  +F RIP PD + +NT+ R +
Sbjct: 6   RLHCYIIKSSKQNDPLSLRTLLLSCVAAAP--ESLSYARYVFSRIPSPDTIAYNTIIRSH 63

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           SR   P  ++F F  + ++G+  D+++FP +LKAC+      L+    LH   +K GL+S
Sbjct: 64  SRF-FPSHSLFYFFSMRSNGIPLDNFTFPFVLKACS-----RLQINLHLHSLIVKYGLDS 117

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           +++V   LI +Y  C  +E A ++F+ +SE   VS++ +I ++  +   +EAL LF ++Q
Sbjct: 118 DIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQ 177

Query: 218 -ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
            E  + P +VTMLS +S+ + LG L+LG+W+  +I + GL   V + TALIDM ++CG +
Sbjct: 178 LEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGLGVSVALGTALIDMFSRCGSI 237

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           D+++ VF+ M+ ++   W+A+I     HG+  +++ MF  M K+ V PD +TF G+L AC
Sbjct: 238 DESIVVFEKMAVRNVLTWTALINGLGVHGRSTEALAMFHSMRKSGVQPDYVTFSGVLVAC 297

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           SH GLV EGW+ F S+R  Y + P + HYGCMVD+LGRAG L+EAY F++ +P+K   I+
Sbjct: 298 SHGGLVKEGWDIFESIRKVYRMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSII 357

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
           WRTLL +C +HNNLGLA++V  +I ++  S  GD V+LSN+   AGRW +   +R  M++
Sbjct: 358 WRTLLGACVNHNNLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMRE 417

Query: 457 RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHG 516
           + + K PGCSSI V+  + EF SGD  H  S D+ K L  ++ +L+  GY+  T  V H 
Sbjct: 418 KRIGKEPGCSSINVDQTIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTKNVLH- 476

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           D+E+EE+E +L YHSEKLA+ F +L+     TIR++KNLR+C
Sbjct: 477 DIEEEEREHSLSYHSEKLAVAFAILSMKDKRTIRIMKNLRIC 518


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/531 (41%), Positives = 344/531 (64%), Gaps = 7/531 (1%)

Query: 32  TSFRGLKQIHAVTIKTHLQ-NDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP-DIVL 89
           +S   L+QIHA +I+  +  +D  +   LI +    P+   M +AH +F +I +P ++ +
Sbjct: 28  SSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFI 87

Query: 90  FNTMARGYSRSKTPIRAIFLFVELLNSGLL-PDDYSFPSLLKACACVGAEALEEGKQLHC 148
           +NT+ RGY+     I A  L+ E+  SGL+ PD +++P L+KA   +    L  G+ +H 
Sbjct: 88  WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRL--GETIHS 145

Query: 149 FAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNE 208
             I+ G  S +YV  +L++LYA C DV +A ++F+ + E  +V++N++I  +A + +P E
Sbjct: 146 VVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEE 205

Query: 209 ALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALID 268
           AL+L+ E+  + +KP   T++S LS+CA +G+L LGK +H Y+ K GL + +  +  L+D
Sbjct: 206 ALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLD 265

Query: 269 MHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDEI 327
           ++A+CGR+++A ++FD M  K++ +W+++IV  A +G G ++I +F+ M   + + P EI
Sbjct: 266 LYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEI 325

Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
           TF+G+LYACSH G+V EG+ YF  MR++Y I P I+H+GCMVDLL RAG++ +AY +I  
Sbjct: 326 TFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKS 385

Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447
           +P++   ++WRTLL +C+ H +  LA+    +I +L+ +H GDYV+LSN+ A   RW DV
Sbjct: 386 MPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDV 445

Query: 448 DYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYV 507
             +RK M   GV KVPG S +EV N V EF  GD  H  S  +   L E+   L+  GYV
Sbjct: 446 QKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYV 505

Query: 508 PDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           P  S V + D+E+EEKE A+ YHSEK+AI F L++TP  + I VVKNLRVC
Sbjct: 506 PQISNV-YVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVC 555


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/531 (41%), Positives = 344/531 (64%), Gaps = 7/531 (1%)

Query: 32  TSFRGLKQIHAVTIKTHLQ-NDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP-DIVL 89
           +S   L+QIHA +I+  +  +D  +   LI +    P+   M +AH +F +I +P ++ +
Sbjct: 28  SSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFI 87

Query: 90  FNTMARGYSRSKTPIRAIFLFVELLNSGLL-PDDYSFPSLLKACACVGAEALEEGKQLHC 148
           +NT+ RGY+     I A  L+ E+  SGL+ PD +++P L+KA   +    L  G+ +H 
Sbjct: 88  WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRL--GETIHS 145

Query: 149 FAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNE 208
             I+ G  S +YV  +L++LYA C DV +A ++F+ + E  +V++N++I  +A + +P E
Sbjct: 146 VVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEE 205

Query: 209 ALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALID 268
           AL+L+ E+  + +KP   T++S LS+CA +G+L LGK +H Y+ K GL + +  +  L+D
Sbjct: 206 ALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLD 265

Query: 269 MHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDEI 327
           ++A+CGR+++A ++FD M  K++ +W+++IV  A +G G ++I +F+ M   + + P EI
Sbjct: 266 LYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEI 325

Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
           TF+G+LYACSH G+V EG+ YF  MR++Y I P I+H+GCMVDLL RAG++ +AY +I  
Sbjct: 326 TFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKS 385

Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447
           +P++   ++WRTLL +C+ H +  LA+    +I +L+ +H GDYV+LSN+ A   RW DV
Sbjct: 386 MPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDV 445

Query: 448 DYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYV 507
             +RK M   GV KVPG S +EV N V EF  GD  H  S  +   L E+   L+  GYV
Sbjct: 446 QKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYV 505

Query: 508 PDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           P  S V + D+E+EEKE A+ YHSEK+AI F L++TP  + I VVKNLRVC
Sbjct: 506 PQISNV-YVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVC 555


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/562 (40%), Positives = 350/562 (62%), Gaps = 25/562 (4%)

Query: 16  KLCTNTPNA-------LSLL-PRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNP 67
           KL  NTP         L+LL   C +   L QIHA  +KT LQN+  +LTK   F + + 
Sbjct: 5   KLPINTPKTRLTEQTILTLLNSHCNTLSKLTQIHAFILKTGLQNNPLILTK---FTSTSS 61

Query: 68  TTSSMEHA--------HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVE-LLNSGL 118
             +S+ +A        H      P  D  LFNT+ R YS+++      FLF   +L  G+
Sbjct: 62  NLNSIHYATSFLFPPSHTTSTPTPSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGV 121

Query: 119 LPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD--VE 176
            P+ ++FP +LK CA +G+  L  GK +H   +K G   +++V  TLI++Y    +   E
Sbjct: 122 TPNKFTFPFVLKGCAGIGS--LRLGKCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFE 179

Query: 177 AARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236
            A ++F++  +   V+++A+I  + R    + A+ LFRE+Q   + P ++TM+S LS+CA
Sbjct: 180 FAEKVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACA 239

Query: 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSA 296
            LG+L+LGKW+  Y++K  + K V++  ALIDM AKCG +D A+ +F  M  +   +W++
Sbjct: 240 DLGALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTS 299

Query: 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKY 356
           +I   A HG+G  ++ +F+EM++  ++PD++ F+G+L ACSH+GLVD+G  YF SM   +
Sbjct: 300 VIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNF 359

Query: 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQV 416
            IVP ++HYGCMVDLL R G + EA+ F+ ++P +   I+WRT++++C +   L L + +
Sbjct: 360 SIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESI 419

Query: 417 IERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVRE 476
            + + + +  H  +YV+LSN+ A+  +WE    +R++M  RG+ KVPG + IEVNN + E
Sbjct: 420 SKELIKSEPMHESNYVLLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYE 479

Query: 477 FFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAI 536
           F +GD  H    ++ + +DE+ +E+K  GYVP TS V   D+++E+KE AL  HSEKLAI
Sbjct: 480 FVAGDKSHDQYKEIYEMVDEMGREIKKAGYVPTTSQVLL-DIDEEDKEDALYRHSEKLAI 538

Query: 537 TFGLLNTPPGTTIRVVKNLRVC 558
            F LLNTPPGT+IR+VKNLRVC
Sbjct: 539 AFALLNTPPGTSIRIVKNLRVC 560


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/539 (41%), Positives = 342/539 (63%), Gaps = 11/539 (2%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           L +L  C +   L Q+H   IK   QN+  VLTK   F + +    ++ +A  L   + +
Sbjct: 11  LDILQACNTLPKLAQLHTHIIKLGFQNNPLVLTK---FTSASSNLDAIPYAMSLVFSVED 67

Query: 85  P---DIVLFNTMARGYSRS-KTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEAL 140
               D  LF+T+ R Y+ S ++   AIF +  +L  G+ P+ Y+FP +LKACA  G   L
Sbjct: 68  ARVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACA--GLRDL 125

Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD-VEAARRIFENISEPCVVSYNAIITA 199
             GK +H   +K G + +++V  T++++Y  CS  +E AR++F+ + +   V++ A+I  
Sbjct: 126 NLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGG 185

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
           YAR  +   A+ LFR++Q   + P DVTM+S LS+C  LG+L+LGKWI  YI+K  + K 
Sbjct: 186 YARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKT 245

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           V+++ AL+DM AKCG +D A+ +F NMS +   +W+++IV  A HG+G +++ +FEEM  
Sbjct: 246 VELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKA 305

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
           + + P++I F+GLL ACSH+GLV+ G  YF  M  ++GIVP I+HYGCMVDLL RAG + 
Sbjct: 306 SGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVT 365

Query: 380 EAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439
           EA  F++ +PI+  PI+WRTL+S+C  H  L L + + +++   +  H  +YV+LSN+  
Sbjct: 366 EALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEPMHESNYVLLSNIYG 425

Query: 440 RAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVK 499
           +   WE    +R  M  +G+ KVPG + IE++N + EF  GD  H+   ++ K ++E+ +
Sbjct: 426 KMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEIHEFIVGDRSHNQYNEIIKMVNEMGR 485

Query: 500 ELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           E+K  GY P T+ V   D+++E+KE AL  HSEKLAI F LLNTPPG+ IR+ KNLRVC
Sbjct: 486 EMKRAGYAPTTTEVFL-DIDEEDKEDALSRHSEKLAIAFALLNTPPGSPIRITKNLRVC 543


>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 558

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/522 (41%), Positives = 334/522 (63%), Gaps = 11/522 (2%)

Query: 39  QIHAVTIKTHLQND-LNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           ++H   IK+  QND L++ T L++     P   S+ +A  +F RIP PD + +NT+ R +
Sbjct: 6   RLHCYIIKSSKQNDPLSLRTLLLSCVAAAP--ESLSYARYVFSRIPSPDTIAYNTIIRSH 63

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           SR   P  ++  F  + ++G+  D+++FP +LKAC+      L+    LH   +K GL S
Sbjct: 64  SRF-FPSHSLSYFFSMRSNGIPLDNFTFPFVLKACS-----RLQINLHLHSLIVKYGLGS 117

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           +++V   LI +Y  C  +E A ++F+ +SE   VS++ +I ++  +   +EAL LF ++Q
Sbjct: 118 DIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQ 177

Query: 218 -ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
            E  + P +VTMLS +S+ + LG L+LG+W+  +I + G    V + TALIDM ++CG +
Sbjct: 178 LEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGFGVSVALGTALIDMFSRCGSI 237

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           D+++ VF+ M+ ++   W+A+I     HG+  +++ MF  M K+ V PD +TF G+L AC
Sbjct: 238 DESIVVFEKMAVRNVLTWTALINGLGIHGRSMEALAMFHSMRKSGVQPDYVTFSGVLVAC 297

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           SH GLV EGW+ F S+R  YG+ P + HYGCMVD+LGRAG L+EAY F++ +P+K   I+
Sbjct: 298 SHGGLVKEGWDIFESIRKVYGMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSII 357

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
           WRTLL +C +HNNLGLA++V  +I ++  S  GD V+LSN+   AGRW +   +R  M++
Sbjct: 358 WRTLLGACVNHNNLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMRE 417

Query: 457 RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHG 516
           + + K PGCSSI V+  + EF SGD  H  S D+ K L  ++ +L+  GY+  T  V H 
Sbjct: 418 KRIGKEPGCSSINVDQTIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTKNVLH- 476

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           D+E+EE+E +L YHSEKLA+ F +L+     TIR++KNLR+C
Sbjct: 477 DIEEEEREHSLSYHSEKLAVAFAILSMKDKRTIRIMKNLRIC 518


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/531 (41%), Positives = 344/531 (64%), Gaps = 7/531 (1%)

Query: 32  TSFRGLKQIHAVTIKTHLQ-NDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP-DIVL 89
           +S   L+QIHA +I+  +  +D  +   LI +    P+   M +AH +F +I +P ++ +
Sbjct: 28  SSLTKLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFI 87

Query: 90  FNTMARGYSRSKTPIRAIFLFVELLNSGLL-PDDYSFPSLLKACACVGAEALEEGKQLHC 148
           +NT+ RGY+     + A+ L+ E+  SG + PD +++P LLKA   +    L  G+ +H 
Sbjct: 88  WNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRL--GETIHS 145

Query: 149 FAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNE 208
             I+ G  S +YV  +L++LYA C DV +A ++F+ + E  +V++N++I  +A + +P E
Sbjct: 146 VVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEE 205

Query: 209 ALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALID 268
           AL+L+ E+  + +KP   T++S LS+CA +G+L LGK  H Y+ K GL + +  +  L+D
Sbjct: 206 ALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLD 265

Query: 269 MHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM-MKAQVSPDEI 327
           ++A+CGR+++A ++FD M  K++ +W+++IV  A +G G ++I +F+ M  K  + P EI
Sbjct: 266 LYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEI 325

Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
           TF+G+LYACSH G+V EG+ YF  M ++Y I P I+H+GCMVDLL RAG++ +AY +I +
Sbjct: 326 TFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILK 385

Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447
           +P++   ++WRTLL +C+ H +  LA+    +I +L+ +H GDYV+LSN+ A   RW DV
Sbjct: 386 MPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRWSDV 445

Query: 448 DYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYV 507
             +RK M   GV KVPG S +EV N V EF  GD  H  +  +   L E+   L++ GYV
Sbjct: 446 QKIRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMIYAKLKEMTDRLRLEGYV 505

Query: 508 PDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           P  S V + D+E+EEKE AL YHSEK+AI F L++TP    IRVVKNL+VC
Sbjct: 506 PQISNV-YVDVEEEEKENALVYHSEKIAIAFMLISTPERWPIRVVKNLKVC 555



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 162/333 (48%), Gaps = 17/333 (5%)

Query: 136 GAEALEEGKQLHCFAIKLGLN-SNLYVCTTLINLYAECSD---VEAARRIFENISEPC-V 190
           G  +L + +Q+H F+I+ G++ S+  +   LI           +  A ++F  I +P  V
Sbjct: 26  GVSSLTKLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINV 85

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERN-LKPTDVTMLSALSSCALLGSLDLGKWIHE 249
             +N +I  YA       A+SL+RE++    ++P   T    L +   +  + LG+ IH 
Sbjct: 86  FIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHS 145

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
            + + G    + V  +L+ ++A CG +  A  VFD M  KD  AW+++I  +A +G+  +
Sbjct: 146 VVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEE 205

Query: 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369
           ++ ++ EM    + PD  T + LL AC+  G +  G   F+    K G+   +     ++
Sbjct: 206 ALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLG-KRFHVYMIKVGLTRNLHSSNVLL 264

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG- 428
           DL  R GR++EA    DE+  K++ + W +L+   + +   GL K+ IE    ++   G 
Sbjct: 265 DLYARCGRVEEAKTLFDEMVDKNS-VSWTSLIVGLAVN---GLGKEAIELFKNMESKEGL 320

Query: 429 ----GDYVILSNLCARAGRW-EDVDYLRKLMKD 456
                 +V +   C+  G   E  +Y R++ ++
Sbjct: 321 LPCEITFVGILYACSHCGMVKEGFEYFRRMSEE 353


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/527 (40%), Positives = 330/527 (62%), Gaps = 6/527 (1%)

Query: 32   TSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFN 91
            + F  LK+ HA      LQ D  +LTK   F     + + ++ A ++F+ IP P   L+N
Sbjct: 731  SCFSCLKKTHAKIFAYGLQYDSRILTK---FAIMYVSFNRIDAASIVFEDIPNPCSFLWN 787

Query: 92   TMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAI 151
             M RG++     + ++ L+ +++  GL PD ++FP  LK+CA  G   L+ GK +H   +
Sbjct: 788  VMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCA--GLSDLQRGKVIHQHLV 845

Query: 152  KLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALS 211
              G +++L+V   L+++YA+C D+EAAR +F+ ++   +VS+ ++I+ YA +   +E L 
Sbjct: 846  CCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLG 905

Query: 212  LFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271
             F  ++   + P  V++LS L +C  LG+L  G+W H Y+ + G +  + V TA++DM++
Sbjct: 906  FFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYS 965

Query: 272  KCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLG 331
            KCG LD A  +FD  +GKD   WSAMI +Y  HG G K+I +F++M+KA V P  +TF  
Sbjct: 966  KCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTC 1025

Query: 332  LLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIK 391
            +L ACSH+GL++EG  YF  M +++ I   + +Y CMVDLLGRAG+L EA   I+ +P++
Sbjct: 1026 VLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVE 1085

Query: 392  STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLR 451
                +W +LL +C  HNNL LA+++ + +F LD  H G +V+LSN+ A   RW +V+ +R
Sbjct: 1086 PDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVR 1145

Query: 452  KLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTS 511
            K+M  RG  K+ G S +E +N V +F  GD  H     L   L+EL   +K +GYVP T 
Sbjct: 1146 KMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTD 1205

Query: 512  LVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             V H D+E+E KE AL YHSE+LAI FGL+NT PGTT+R+ KNLR+C
Sbjct: 1206 FVLH-DIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRIC 1251



 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 164/495 (33%), Positives = 282/495 (56%), Gaps = 9/495 (1%)

Query: 25  LSLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           +S++  C     +K    +H + I+     DL ++  L+N   +   T   + A  LF +
Sbjct: 210 VSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAK---TGCEKIAANLFSK 266

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +PE D++ ++TM   Y+ ++    A+ LF E++     P+  +  S L+ACA   +  LE
Sbjct: 267 MPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAV--SRNLE 324

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           EGK++H  A+  G   +  V T LI++Y +CS  + A  +F+ + +  VVS+ A+++ YA
Sbjct: 325 EGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYA 384

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++    +++ +FR +    ++P  V ++  L++ + LG       +H Y+ + G +  V 
Sbjct: 385 QNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVF 444

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK-A 320
           V  +LI++++KCG L DAV +F  M  +D   WS+MI AY  HG+G +++ +F++M+K +
Sbjct: 445 VGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNS 504

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
            V P+ +TFL +L ACSH GLV+EG   F  M   Y + P  +H+G MVDLLGR G+L +
Sbjct: 505 TVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGK 564

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           A   I+ +PI + P +W  LL +C  H+N+ + +   + +F LD SH G Y++LSN+ A 
Sbjct: 565 AMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAV 624

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
            G+W++V  LR  +K+RG+ K+ G S +EV   V  F + D  H  S  + + L +L  +
Sbjct: 625 DGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYELLRKLEAQ 684

Query: 501 LKMVGYVPDTSLVHH 515
           +    Y+PD   + H
Sbjct: 685 MGKEVYIPDLDFLLH 699



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 110/381 (28%), Positives = 199/381 (52%), Gaps = 10/381 (2%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           + L   C + R + Q+H+   KT + +D    TKL +   +    +S++ A  +FD  P 
Sbjct: 8   VDLFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAK---CASLQAARKVFDETPH 64

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLF-VELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
           P++ L+N+  R Y R K     + LF + +  +G  PD+++ P  LKACA  G   LE G
Sbjct: 65  PNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACA--GLRMLELG 122

Query: 144 KQLHCFAIKLG-LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           K +H FA K   + S+++V + L+ LY++C  +  A ++FE    P  V + +++T Y +
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQ 182

Query: 203 SSRPNEALSLFRELQERNLKPTD-VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++ P EAL+LF ++   +    D VT++S +S+CA L ++  G  +H  + +   D  + 
Sbjct: 183 NNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLP 242

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           +  +L++++AK G    A ++F  M  KD  +WS MI  YA +   ++++ +F EM++ +
Sbjct: 243 LVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKR 302

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
             P+ +T +  L AC+ +  ++EG    + +    G          ++D+  +    DEA
Sbjct: 303 FEPNSVTVVSALQACAVSRNLEEG-KKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEA 361

Query: 382 YRFIDELPIKSTPILWRTLLS 402
                 LP K   + W  LLS
Sbjct: 362 VDLFQRLP-KKDVVSWVALLS 381


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/518 (41%), Positives = 319/518 (61%), Gaps = 38/518 (7%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           ++++  LF R   P +  +  +  G++      +A+  + ++L  G+ P+ ++F S+LK 
Sbjct: 25  LDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKL 84

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C       +E GK LH  A+KLG +S+LYV T L+++YA   DV +A+++F+ + E  +V
Sbjct: 85  CP------IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLV 138

Query: 192 SYNAIITAYAR-------------------------------SSRPNEALSLFRELQERN 220
           S  A++T YA+                               +  PNEAL LFR + +  
Sbjct: 139 SLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAK 198

Query: 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV 280
            KP +VT+LS LS+C  LG+L+ G+W+H YI+  G+   V V TAL+DM++KCG L+DA 
Sbjct: 199 AKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDAR 258

Query: 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG 340
            VFD +  KD  AW++MIV YA  G   +++ +F+ M +  + P  ITF+G+L AC H+G
Sbjct: 259 LVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSG 318

Query: 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400
            V EGW+ F  M+D+YGI P I+HYGCMV+LLGRAG +++AY  +  + I+  P+LW TL
Sbjct: 319 WVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTL 378

Query: 401 LSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460
           L +C  H  + L ++++E + + + ++ G Y++LSN+ A  G W+ V  LR +MKD GV 
Sbjct: 379 LGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVK 438

Query: 461 KVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMED 520
           K PGCSSIEVNN V EF +G   H    ++   L+E+   LK  GY P T +V H D+ +
Sbjct: 439 KEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLH-DIGE 497

Query: 521 EEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            EKE +L  HSEKLAI FGL+NT PGTTI++VKNLRVC
Sbjct: 498 TEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVC 535



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 118/264 (44%), Gaps = 37/264 (14%)

Query: 169 YAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTM 228
           YA    ++ +  +F     P V  + AII  +A      +AL+ + ++  + ++P   T 
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78

Query: 229 LSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDM------------------- 269
            S L  C     ++ GK +H    K G D  + V T L+D+                   
Sbjct: 79  SSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPE 134

Query: 270 ------------HAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
                       +AK G LD A  +FD M  +D   W+ MI  Y  +G  ++++++F  M
Sbjct: 135 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 194

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
           +KA+  P+E+T L +L AC   G ++ G  + +S  +  GI   +     +VD+  + G 
Sbjct: 195 LKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQFNVHVGTALVDMYSKCGS 253

Query: 378 LDEAYRFIDELPIKSTPILWRTLL 401
           L++A    D++  K   + W +++
Sbjct: 254 LEDARLVFDKIDDKDV-VAWNSMI 276



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 98/235 (41%), Gaps = 41/235 (17%)

Query: 20  NTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N    LS+L  C     L   + +H+      +Q +++V T L++  ++     S+E A 
Sbjct: 202 NEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSK---CGSLEDAR 258

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
           L+FD+I + D+V +N+M  GY+       A+ LF  +   GL P + +F  +L AC   G
Sbjct: 259 LVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSG 318

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
                                     T   +++ +  D        E   EP +  Y  +
Sbjct: 319 W------------------------VTEGWDIFNKMKD--------EYGIEPKIEHYGCM 346

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           +    R+    +A  L + +   N++P  V   + L +C L G + LG+ I E +
Sbjct: 347 VNLLGRAGHVEQAYELVKNM---NIEPDPVLWGTLLGACRLHGKIALGEKIVELL 398



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 6/155 (3%)

Query: 270 HAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITF 329
           +A  GRLD +V++F          W+A+I  +A  G   +++  + +M+   V P+  TF
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78

Query: 330 LGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389
             +L  C     ++ G    +S   K G    +     ++D+  R G +  A +  D +P
Sbjct: 79  SSILKLCP----IEPG-KALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMP 133

Query: 390 IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
            KS   L   +L+  + H  L  A+ + + + E D
Sbjct: 134 EKSLVSL-TAMLTCYAKHGELDAARVLFDGMEERD 167


>gi|255562872|ref|XP_002522441.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538326|gb|EEF39933.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 290

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/333 (63%), Positives = 241/333 (72%), Gaps = 43/333 (12%)

Query: 168 LYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT 227
           +Y EC+DV+  RR+F+ I EPCV+SYNAII  YARS+RPNEAL+LFR+LQ + LKPTDV 
Sbjct: 1   MYTECNDVDGTRRVFDKILEPCVISYNAIIMIYARSNRPNEALALFRKLQAKKLKPTDVI 60

Query: 228 MLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS 287
           MLS L SCA LG+LDLGKW++EY+KK G DKYVKVNTALI M+AKCG LDDA+S F NM 
Sbjct: 61  MLSVLLSCAFLGALDLGKWVNEYVKKNGFDKYVKVNTALISMYAKCGSLDDAISAFQNMR 120

Query: 288 GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN 347
            K T+                                             HTGLVDEG  
Sbjct: 121 VKHTET-------------------------------------------CHTGLVDEGLG 137

Query: 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
           YFYSM D YGI+P IKHYGC VDLL RAG LDEAY+F+D LPIK  PILWRTLLS+CSSH
Sbjct: 138 YFYSMSDSYGIMPRIKHYGCTVDLLSRAGHLDEAYKFVDGLPIKPIPILWRTLLSACSSH 197

Query: 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSS 467
            NL L KQV+ERIFELDDSHGGDYVILSN+CARAG+WEDVD LRKLM DRG +K+PGCS 
Sbjct: 198 GNLELGKQVLERIFELDDSHGGDYVILSNMCARAGKWEDVDSLRKLMIDRGAVKIPGCSL 257

Query: 468 IEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
           IEVN+VV EFFSG+GV   S  + +ALDELV+E
Sbjct: 258 IEVNSVVHEFFSGEGVQYVSITIHEALDELVEE 290



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 110/233 (47%), Gaps = 34/233 (14%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           +FD+I EP ++ +N +   Y+RS  P  A+ LF +L    L P D    S+L +CA +G 
Sbjct: 14  VFDKILEPCVISYNAIIMIYARSNRPNEALALFRKLQAKKLKPTDVIMLSVLLSCAFLG- 72

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI----SEPC---- 189
            AL+ GK ++ +  K G +  + V T LI++YA+C  ++ A   F+N+    +E C    
Sbjct: 73  -ALDLGKWVNEYVKKNGFDKYVKVNTALISMYAKCGSLDDAISAFQNMRVKHTETCHTGL 131

Query: 190 --------------------VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTML 229
                               +  Y   +   +R+   +EA      L    +KP  +   
Sbjct: 132 VDEGLGYFYSMSDSYGIMPRIKHYGCTVDLLSRAGHLDEAYKFVDGLP---IKPIPILWR 188

Query: 230 SALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
           + LS+C+  G+L+LGK + E I +   D +      L +M A+ G+ +D  S+
Sbjct: 189 TLLSACSSHGNLELGKQVLERIFELD-DSHGGDYVILSNMCARAGKWEDVDSL 240


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/530 (42%), Positives = 345/530 (65%), Gaps = 11/530 (2%)

Query: 34  FRGLKQIHAVTIKTHLQNDLNV---LTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLF 90
            R L+QIHA  + TH     ++   L K+I FC  +P    +++A  LF +I  P+I  +
Sbjct: 1   MRVLRQIHA-RLLTHAMPISSISFGLCKIIGFCALSPY-GDIDYARKLFSQIQRPNIFSW 58

Query: 91  NTMARGYSRSKTPIRA-IFLFVELLNSGLL-PDDYSFPSLLKACACVGAEALEEGKQLHC 148
           N+M RG S+S+TP +  + LF +++  G   P+ ++   +LKAC+ V A  LEEG+Q+H 
Sbjct: 59  NSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSA--LEEGQQVHA 116

Query: 149 FAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNE 208
             +K G  S+ +V T L+N YA+C D+  A ++F+ I++  +V+++ +I+ YAR    NE
Sbjct: 117 NVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNE 176

Query: 209 ALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALID 268
           AL LFR++Q+  + P +VTM+S +S+CA  G+LD GKW+H YI K  ++  ++++TAL++
Sbjct: 177 ALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVN 236

Query: 269 MHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT 328
           M+AKCG ++ A  VFD M  KDT+AWS+MIV  A +G    ++  F  M +A+V P+ +T
Sbjct: 237 MYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVT 296

Query: 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388
           F+G+L AC+H+GLV EG  Y+ SM + +GIVP ++ YGCMVDLL RA  +++A   ++ +
Sbjct: 297 FIGVLSACAHSGLVSEGRRYWSSMLE-FGIVPSMELYGCMVDLLCRASLVEDACTLVETM 355

Query: 389 PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVD 448
           PI   P++WRTLL  C    NL  ++ V +R+ EL+  +  +Y++LSNL A   +WE + 
Sbjct: 356 PISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKMS 415

Query: 449 YLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVP 508
            +RK MK  G+  VPGCSSIEV+ +V EF  GD  H  + ++++ L ++ K +  VG+ P
Sbjct: 416 QVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRVHAVGHQP 475

Query: 509 DTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             S V H ++ DEEKE AL  HSE+LAI +GLL T     IR+VKNLRVC
Sbjct: 476 GISDVLH-NVVDEEKENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVC 524


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/534 (41%), Positives = 332/534 (62%), Gaps = 4/534 (0%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           ++ + RCT    LK I A  ++ +L  D  + +KLI   +    +  + +AH +F     
Sbjct: 11  VAAIKRCTRVGDLKAIQAHMVRANLTQDTFLTSKLIE-SSAVTLSGHVAYAHRIFSCTHH 69

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
           P++ ++NT+ RGYS S +PI AI L+ ++   G+ P+ Y+F  +LKAC  +    L EG+
Sbjct: 70  PNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKL--LRLCEGQ 127

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           +LH   +K+GL+    +   LI LYA C  ++ A  +F+ + EP   S++ +++ YA++ 
Sbjct: 128 ELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNG 187

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
           +  EAL LFRE+Q  N+     T+ S +  C  LG+LDLGKW+H Y+ K G+   V + T
Sbjct: 188 QAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGT 247

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
           AL+ M++KCG LD+A+ VF  M+ +D  AWS MI  YA HG G K++ +F+ M +++  P
Sbjct: 248 ALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIP 307

Query: 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF 384
           + +TF  +L ACSH+GLV++G   F +M  +Y I P IKHYGCMVDL  RAG +  A++F
Sbjct: 308 NCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKF 367

Query: 385 IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444
           I  +PI+   +LWRTLL +C +H    L + +  +I +LD S   +YV++SN+ A  GRW
Sbjct: 368 IQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLVSNVYASLGRW 427

Query: 445 EDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMV 504
             V  +R LMKD+   K  G SSIE+N +V +F  GD  H     +   L ++ ++LK V
Sbjct: 428 SSVCQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPEREKIYGMLHQMARKLKQV 487

Query: 505 GYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           G+V  T  V H D+++EEKE AL  HSE+LAI +GLL+TP G+ IR+VKNLRVC
Sbjct: 488 GHVNSTVDVLH-DIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRVC 540


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/536 (41%), Positives = 343/536 (63%), Gaps = 6/536 (1%)

Query: 25  LSLLPRCTSFRG-LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           +SL+  C S +  LKQIHA +I+  +        K + F   +  ++ M  A  +F++I 
Sbjct: 38  ISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVS-LSAPMSFAAQIFNQIQ 96

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVEL-LNSGLLPDDYSFPSLLKACACVGAEALEE 142
            P+I  +NTM RG++ S+ P  A+ LF ++   S +LPD ++FP L KA A +   +L E
Sbjct: 97  APNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGE 156

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G  +H   ++ G +S  +V  +L+++Y+     E+A ++FE +S    V++N++I  +A 
Sbjct: 157 G--IHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFAL 214

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
           +  PNEAL+L+RE+    ++P   TM+S LS+C  LG+L LG+ +H Y+ K GL +    
Sbjct: 215 NGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHA 274

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
           + AL+D+++KCG   DA  VFD M  +   +W+++IV  A +G G++++ +F E+ +  +
Sbjct: 275 SNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGL 334

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            P EITF+G+LYACSH G++DEG+NYF  M+++YGI+P I+H+GCMVDLL RAG++ +AY
Sbjct: 335 KPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAY 394

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
            +I  +P+    ++WRTLL +C+ H +L L +     I  L+  H GD+V+LSNL A   
Sbjct: 395 DYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASER 454

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           RW DV  +RK+M  +GV K PG S +E+ N V EF  GD  H  S +    L ++ + LK
Sbjct: 455 RWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLK 514

Query: 503 MVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           + GYVP T  V   D+E+EEKE AL +H+EK+AI F L+NTPPGT IR++KNLRVC
Sbjct: 515 IEGYVPRTVNV-LADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVC 569


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/535 (40%), Positives = 334/535 (62%), Gaps = 10/535 (1%)

Query: 27  LLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           +L +CT  R LKQ   IHA    +  ++DL +L  ++N   +     S+E A  LFD++P
Sbjct: 111 MLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAK---CGSLEEAQDLFDKMP 167

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
             D+V +  +  GYS+S     A+ LF ++L+ G  P++++  SLLKA     ++    G
Sbjct: 168 TKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSD--HHG 225

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
           +QLH F++K G + N++V ++L+++YA  + +  A+ IF +++   VVS+NA+I  +AR 
Sbjct: 226 RQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARK 285

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
                 + LF ++  +  +PT  T  S  ++CA  GSL+ GKW+H ++ K G      + 
Sbjct: 286 GEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIG 345

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
             LIDM+AK G + DA  VF  +  +D  +W+++I  YA HG G +++ +FE+M+KA+V 
Sbjct: 346 NTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQ 405

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
           P+EITFL +L ACSH+GL+DEG  Y++ +  K+ I   + H+  +VDLLGRAGRL+EA +
Sbjct: 406 PNEITFLSVLTACSHSGLLDEG-QYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANK 464

Query: 384 FIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443
           FI+E+PIK T  +W  LL SC  H N+ L     E+IFELD    G +V+LSN+ A AGR
Sbjct: 465 FIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGR 524

Query: 444 WEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKM 503
             D   +RK+MK+ GV K P CS +E+ N V  F + D  H    ++Q+  +++  ++K 
Sbjct: 525 LSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKE 584

Query: 504 VGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +GYVPDTS V    M  +++E+ L+YHSEKLA+ F +L TPPG TIR+ KN+R+C
Sbjct: 585 IGYVPDTSHVLFF-MNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRIC 638



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 126/286 (44%), Gaps = 19/286 (6%)

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
           +L+P        L+ C  L  L  G+ IH +I+    +  + +   +++M+AKCG L++A
Sbjct: 100 SLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEA 159

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
             +FD M  KD  +W+ +I  Y+  GQ  +++ +F +M+     P+E T   LL A S T
Sbjct: 160 QDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA-SGT 218

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRT 399
           G  D      ++   KYG    +     ++D+  R   + EA    + L  K+  + W  
Sbjct: 219 GPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNV-VSWNA 277

Query: 400 LLSSCSSHNNLGLAKQVIERIFEL-----DDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454
           L+   + H   G  + V+    ++     + +H   Y  +   CA +G  E   ++    
Sbjct: 278 LI---AGHARKGEGEHVMRLFLQMLRQGFEPTH-FTYSSVFTACASSGSLEQGKWVHA-- 331

Query: 455 KDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
               V+K  G     + N + + ++  G      D +K    LVK+
Sbjct: 332 ---HVIKSGGQPIAYIGNTLIDMYAKSGS---IKDAKKVFRRLVKQ 371


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/536 (41%), Positives = 343/536 (63%), Gaps = 6/536 (1%)

Query: 25  LSLLPRCTSFRG-LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           +SL+  C S +  LKQIHA +I+  +        K + F   +  ++ M  A  +F++I 
Sbjct: 38  ISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVS-LSAPMSFAAQIFNQIQ 96

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVEL-LNSGLLPDDYSFPSLLKACACVGAEALEE 142
            P+I  +NTM RG++ S+ P  A+ LF ++   S +LPD ++FP L KA A +   +L E
Sbjct: 97  APNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGE 156

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G  +H   ++ G +S  +V  +L+++Y+    + +A ++FE +S    V++N++I  +A 
Sbjct: 157 G--IHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFAL 214

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
           +  PNEAL+L+RE+    ++P   TM+S LS+C  LG+L LG+ +H Y+ K GL +    
Sbjct: 215 NGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHA 274

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
           + AL+D+++KCG   DA  VFD M  +   +W+++IV  A +G G++++ +F E+ +  +
Sbjct: 275 SNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGL 334

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            P EITF+G+LYACSH G++DEG+NYF  M+++YGI+P I+H+GCMVDLL RAG++ +AY
Sbjct: 335 KPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAY 394

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
            +I  +P+    ++WRTLL +C+ H +L L +     I  L+  H GD+V+LSNL A   
Sbjct: 395 DYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASER 454

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           RW DV  +RK+M  +GV K PG S +E+ N V EF  GD  H  S +    L ++ + LK
Sbjct: 455 RWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLK 514

Query: 503 MVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           + GYVP T  V   D+E+EEKE AL +H+EK+AI F L+NTPPGT IR++KNLRVC
Sbjct: 515 IEGYVPRTVNV-LADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVC 569


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/557 (39%), Positives = 337/557 (60%), Gaps = 34/557 (6%)

Query: 6   SPPITQSPPPKLCTNTPNALSL--LPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFC 63
           S  + Q+ PP L +   + L L  L  C++   LKQ H+  I+  L  D + + ++I FC
Sbjct: 3   SLQLLQASPPSLSSAKAHKLPLYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFC 62

Query: 64  TQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDY 123
             + +                           GY R +     IF++  +L+  + P+ +
Sbjct: 63  AISKS---------------------------GYLRWQLARNCIFMYSRMLHKSVSPNKF 95

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           ++P L++AC C+   A+EEGKQ+H   +K G  ++ +    LI++Y     +E ARR+F+
Sbjct: 96  TYPPLIRAC-CIDY-AIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFD 153

Query: 184 NISEP--CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSL 241
           N+ +     VS+NA+I AY +S+R +EA +LF  ++  N+        S LS+C  LG+L
Sbjct: 154 NMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGAL 213

Query: 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
           + GKWIH YI+K G++   K+ T +IDM+ KCG L+ A  VF+ +  K   +W+ MI   
Sbjct: 214 EQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGL 273

Query: 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG 361
           A HG+G  +I +F+EM +  V+PD ITF+ +L AC+H+GLV+EG +YF  M +  G+ PG
Sbjct: 274 AMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPG 333

Query: 362 IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421
           ++H+GCMVDLLGRAG L+EA + I+E+P+     +   L+ +C  H N  L +Q+ +++ 
Sbjct: 334 MEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVI 393

Query: 422 ELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGD 481
           EL+  + G YV+L+NL A AGRWEDV  +RKLM DRGV K PG S IE  + V EF +G 
Sbjct: 394 ELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGG 453

Query: 482 GVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLL 541
             H  + ++   LDE+++ ++ +GYVPDT  V H D+++EEKE  L YHSEKLAI FGLL
Sbjct: 454 RAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLH-DIDEEEKENPLYYHSEKLAIAFGLL 512

Query: 542 NTPPGTTIRVVKNLRVC 558
            T PG T+R+ KNLR+C
Sbjct: 513 KTKPGETLRISKNLRIC 529


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/452 (46%), Positives = 300/452 (66%), Gaps = 5/452 (1%)

Query: 109 LFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINL 168
            +  +L + +LP   SF  +L++CA  G   L  G+  HC  +K+G   ++ + T L++ 
Sbjct: 17  FYSGMLRNDVLPSKTSFSLILRSCAISGEAQL--GEAFHCQIMKMGFEYDMILQTGLLDF 74

Query: 169 YAECSDVEAARRIFENISE--PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV 226
           YA+   VE AR +F+N++E     V++N +I+AY +      A+S+F+++Q  N+KPT+V
Sbjct: 75  YAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEV 134

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
           TM+S LS+CA LG+LD+G+WIH YI+   L   V +  ALIDM+ KCG L+ A+ VF  +
Sbjct: 135 TMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGL 194

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
           S K+   W+++IV    +G+G ++I  F  M K  + PD +TF+G+L  CSH+GL+  G 
Sbjct: 195 SRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQ 254

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
            YF  M   YG+ PG++HYGCMVDLLGRAG L EA   I  +P+K   ++  +LL +C  
Sbjct: 255 RYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQI 314

Query: 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCS 466
           H +  L +QV +++ ELD   GG+YV LSNL A   RW+DV+  RKLM  RGV K PGCS
Sbjct: 315 HKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCS 374

Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
           SIEVNN+V EF +GD  H   T +   LDE+ KELK  G+VP+T+ V H D+E+EEKE A
Sbjct: 375 SIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANVLH-DIEEEEKEGA 433

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +RYHSE++A+ FGL++TPPG TIRVVKNLR C
Sbjct: 434 IRYHSERIAVAFGLMSTPPGKTIRVVKNLRTC 465



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 157/327 (48%), Gaps = 20/327 (6%)

Query: 21  TPNALSLLPRCTSFRGLKQI----HAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           +  + SL+ R  +  G  Q+    H   +K   + D+ + T L++F  ++     +E A 
Sbjct: 29  SKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKH---GYVEEAR 85

Query: 77  LLFDRIPE--PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
            LFD + E   + V +NTM   Y +      AI +F ++ +  + P + +  SLL ACA 
Sbjct: 86  NLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAH 145

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           +G  AL+ G+ +H +     L  ++ +   LI++Y +C  +EAA  +F  +S   +  +N
Sbjct: 146 LG--ALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWN 203

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEYIKK 253
           +II     + R  EA++ F  +++  +KP  VT +  LS C+  G L  G ++  E +  
Sbjct: 204 SIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGV 263

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
           YGL+  V+    ++D+  + G L +A+ +   M  K     S ++ +     Q HK   +
Sbjct: 264 YGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPN---SMVLGSLLRACQIHKDTKL 320

Query: 314 FEEMMKAQVSPD-----EITFLGLLYA 335
            E++ +  +  D        FL  LYA
Sbjct: 321 GEQVTQQLLELDPCDGGNYVFLSNLYA 347



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 102/197 (51%), Gaps = 10/197 (5%)

Query: 210 LSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDM 269
           L  +  +   ++ P+  +    L SCA+ G   LG+  H  I K G +  + + T L+D 
Sbjct: 15  LGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDF 74

Query: 270 HAKCGRLDDAVSVFDNMSGKDTQA--WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
           +AK G +++A ++FDNM+ +++ +  W+ MI AY   G+   +I MF++M    V P E+
Sbjct: 75  YAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEV 134

Query: 328 TFLGLLYACSHTGLVDEG-W--NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF 384
           T + LL AC+H G +D G W   Y  + R K  +V G      ++D+  + G L+ A   
Sbjct: 135 TMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLG----NALIDMYCKCGALEAAIDV 190

Query: 385 IDELPIKSTPILWRTLL 401
              L  K+    W +++
Sbjct: 191 FHGLSRKNI-FCWNSII 206


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/547 (38%), Positives = 344/547 (62%), Gaps = 9/547 (1%)

Query: 12  SPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSS 71
           SP      NT  + S +   +  RG   + A   K     D  VL  LI+      +   
Sbjct: 168 SPDQHTVANTVKSCSRMCDLSVGRG---VQAYAFKRGFMVDQFVLNSLIHMYA---SCGD 221

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +  AH+LF  +    ++ +N M  GY ++      + +F  +L      D+ +  S+  A
Sbjct: 222 VVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATA 281

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C  +G   L  G+ +  +A + G+  +  + T L+++YA+C +++ ARR+F+ +    VV
Sbjct: 282 CGRLGDANL--GQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVV 339

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           +++A+I+ Y +S R  EAL++F E+Q   + P DVTM+S LS+CA+LG+L+ GKW+H YI
Sbjct: 340 AWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYI 399

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
           ++  L   V + TAL+D +AKCG + DAV  F++M  ++T  W+A+I   A++G+  +++
Sbjct: 400 RRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREAL 459

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +F  M++A + P ++TF+G+L ACSH  LV+EG  +F SM   YGI P I+HYGCMVDL
Sbjct: 460 ELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDL 519

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
           LGRAG +DEAY+FI  +PI+   ++WR LLS+C+ H N+ + ++ +++I  LD  H G+Y
Sbjct: 520 LGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNY 579

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           ++LSN  A  G+W++   +RK MK++GV K+PGCS IE+   + EFF+ D  H   T++ 
Sbjct: 580 ILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIY 639

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
           + + E+++ +KMVGY+P+T+     D+++ EK++++ +HSEKLAI FGL+ + PG TIR+
Sbjct: 640 EKVHEMIENIKMVGYIPNTADARL-DVDEYEKQVSVSHHSEKLAIAFGLMKSRPGATIRL 698

Query: 552 VKNLRVC 558
            KNLRVC
Sbjct: 699 SKNLRVC 705



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 121/426 (28%), Positives = 223/426 (52%), Gaps = 21/426 (4%)

Query: 1   MATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIK----THLQNDLNVL 56
           MA T + P  + P P +    P+     PR  + R + Q+HA  +K    T   +  + L
Sbjct: 48  MAAT-ALPAARLPAPGM----PSPARQTPRRAALRDVPQLHATLLKSGAMTTSPDSFHSL 102

Query: 57  TKLINFCTQNPTTSSMEHAHLLFDRIPEP--DIVLFNTMARGYSRSKTPIRAIFLFVELL 114
            +         +++ + +A  LF   P P      +N + R + R+  P  A+ LFVE+L
Sbjct: 103 LEAAALPAPATSSAHLSYAIRLFRLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEML 162

Query: 115 -NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
            ++ + PD ++  + +K+C+ +    L  G+ +  +A K G   + +V  +LI++YA C 
Sbjct: 163 DDTAVSPDQHTVANTVKSCSRMC--DLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCG 220

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
           DV AA  +F  +    V+++NA+I  Y ++    E + +F+ + E      +VT+LS  +
Sbjct: 221 DVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVAT 280

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
           +C  LG  +LG+WI EY ++ G+ +   + TAL+DM+AKCG LD A  +FD M  +D  A
Sbjct: 281 ACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVA 340

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSM 352
           WSAMI  Y    +  +++ +F EM   +V+P+++T + +L AC+  G ++ G W + Y  
Sbjct: 341 WSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIR 400

Query: 353 RDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGL 412
           R    +   +     +VD   + G + +A +  + +P+++T   W  L+   +S+   G 
Sbjct: 401 RKDLPLTVILG--TALVDFYAKCGCIKDAVKAFESMPVRNT-WTWTALIKGMASN---GR 454

Query: 413 AKQVIE 418
           +++ +E
Sbjct: 455 SREALE 460


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/537 (40%), Positives = 335/537 (62%), Gaps = 10/537 (1%)

Query: 25  LSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           +S+LP  ++ R +   K+IH   ++    + +N+ T L++   +     S++ A LLFD 
Sbjct: 240 VSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAK---CGSLKTARLLFDG 296

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           + E ++V +N+M   Y +++ P  A+ +F ++L+ G+ P D S    L ACA +G   LE
Sbjct: 297 MLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGD--LE 354

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G+ +H  +++L L+ N+ V  +LI++Y +C +V+ A  +F  +    +VS+NA+I  +A
Sbjct: 355 RGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFA 414

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++ RP EAL+ F ++Q R +KP   T +S +++ A L      KWIH  + +  LDK V 
Sbjct: 415 QNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVF 474

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V TAL+DM+AKCG +  A  +FD MS +    W+AMI  Y THG G  ++ +FEEM K  
Sbjct: 475 VTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGT 534

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           + P+ +TFL ++ ACSH+GLV+ G   F+ M++ Y I P + HYG MVDLLGRAGRL+EA
Sbjct: 535 IRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEA 594

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
           + FI ++P+K    ++  +L +C  H N+  A++V ER+FEL+   GG +V+L+N+   A
Sbjct: 595 WDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAA 654

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
             WE V  +R  M  +G+ K PGCS +E+ N V  FFSG   H  S  +   L++L+ ++
Sbjct: 655 SMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLEKLICQI 714

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K  GYVPDT+L+    +ED+ KE  L  HSEKLAI+FGLLNT  GTTI V KNLRVC
Sbjct: 715 KEAGYVPDTNLIL--GLEDDVKEQLLSSHSEKLAISFGLLNTTAGTTIHVRKNLRVC 769



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/350 (32%), Positives = 194/350 (55%), Gaps = 19/350 (5%)

Query: 7   PPITQSPP---------PKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLT 57
           PPI+ S           P      P AL LL RC+S + L+ I  +  K  L  +    T
Sbjct: 15  PPISSSHRHFLSQRNYIPANVYEHPAAL-LLERCSSLKELRHILPLIFKNGLYQEHLFQT 73

Query: 58  KLIN-FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS 116
           KL++ FC       S++ A  +F+ I +   VL+ TM +G+++     +A+  FV + + 
Sbjct: 74  KLVSLFCRY----GSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDD 129

Query: 117 GLLPDDYSFPSLLKACACVGAEA-LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDV 175
            + P  Y+F  LLK C   G EA L  GK++H   +K G + +L+  T L N+YA+C  V
Sbjct: 130 EVEPVVYNFTYLLKVC---GDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQV 186

Query: 176 EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSC 235
             AR++F+ + E  +VS+N I+  Y+++     AL +   + E NLKP+ +T++S L + 
Sbjct: 187 HEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAV 246

Query: 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWS 295
           + L  + +GK IH Y  + G D  V + TAL+DM+AKCG L  A  +FD M  ++  +W+
Sbjct: 247 SALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWN 306

Query: 296 AMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
           +MI AY  +    +++++F++M+   V P +++ +G L+AC+  G ++ G
Sbjct: 307 SMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERG 356



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 87/208 (41%), Gaps = 11/208 (5%)

Query: 216 LQERNLKPTDVTMLSA---LSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           L +RN  P +V    A   L  C+ L  L   + I   I K GL +     T L+ +  +
Sbjct: 25  LSQRNYIPANVYEHPAALLLERCSSLKEL---RHILPLIFKNGLYQEHLFQTKLVSLFCR 81

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
            G +D+A  VF+ +  K    +  M+  +A      K++  F  M   +V P    F  L
Sbjct: 82  YGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYL 141

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L  C     +  G    + +  K G    +     + ++  +  ++ EA +  D +P + 
Sbjct: 142 LKVCGDEAELRVG-KEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERD 200

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERI 420
             + W T+++  S +   G+A+  +E +
Sbjct: 201 L-VSWNTIVAGYSQN---GMARMALEMV 224


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/569 (39%), Positives = 334/569 (58%), Gaps = 37/569 (6%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           P  +      +S    + IH + +K    +DL +   LI+F +   +   ++ A+L+F +
Sbjct: 135 PFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYS---SLGDLDSAYLVFSK 191

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           I E DIV +N+M  G+ +  +P  A+ LF  +      P+  +   +L ACA      LE
Sbjct: 192 IVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACA--KRIDLE 249

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY-------- 193
            G+    +  + G++ NL +   ++++Y +C  +E ARR+F+ + E  +VS+        
Sbjct: 250 FGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYA 309

Query: 194 -----------------------NAIITAYARSSRPNEALSLFRELQ-ERNLKPTDVTML 229
                                  NA+I++Y ++ +P EAL++FRELQ  +N KP +VT+ 
Sbjct: 310 KVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLA 369

Query: 230 SALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK 289
           S L++CA LG++DLG WIH YIKK G+     + T+LIDM++KCG L+ A+ VF ++  +
Sbjct: 370 STLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERR 429

Query: 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYF 349
           D   WSAMI   A HG G  +I +F +M + +V P+ +TF  LL ACSH+GLVDEG  +F
Sbjct: 430 DVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFF 489

Query: 350 YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
             MR  YG+VPG KHY CMVD+LGRAG L+EA   I+++PI  +  +W  LL +C  + N
Sbjct: 490 NQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGN 549

Query: 410 LGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIE 469
           + LA+    R+ E D ++ G YV+LSN+ A+AG+W+ V  LR+ MK  G+ K PGCSSIE
Sbjct: 550 VELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIE 609

Query: 470 VNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRY 529
           VN ++ EF  GD  H  ST++   LDE+V  +K  GYV D S +     E+  KE AL  
Sbjct: 610 VNGIIHEFLVGDNSHPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHALNL 669

Query: 530 HSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           HSEKLAI +GL+   P   IR+VKNLRVC
Sbjct: 670 HSEKLAIAYGLIRMEPSQPIRIVKNLRVC 698



 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 131/465 (28%), Positives = 241/465 (51%), Gaps = 49/465 (10%)

Query: 1   MATTPSP----PITQSPPPKLCTN----TPNALSLL-PRCTSFRGLKQIHAVTIKTHLQN 51
           MAT  +P    PI+ +P      N     P+ + +L  +C + + LKQ+HA  ++T L  
Sbjct: 1   MATLGNPLASVPISSNPTILTANNEQKSNPSTVPILIDKCANKKHLKQLHAHMLRTGLFF 60

Query: 52  DLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFV 111
           D    TKL   C  + + SS+++A  +FD+IP P++  +NT+ R ++ S  PI+ + +F+
Sbjct: 61  DPPSATKLFTACALS-SPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFI 119

Query: 112 ELLN-SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA 170
           ++L+ S   P+ Y+FP ++KA   V   +L  G+ +H   +K    S+L++  +LI+ Y+
Sbjct: 120 QMLHESQRFPNSYTFPFVIKAATEV--SSLLAGQAIHGMVMKASFGSDLFISNSLIHFYS 177

Query: 171 ECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLS 230
              D+++A  +F  I E  +VS+N++I+ + +   P EAL LF+ ++  N +P  VTM+ 
Sbjct: 178 SLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVG 237

Query: 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK- 289
            LS+CA    L+ G+W  +YI++ G+D  + ++ A++DM+ KCG L+DA  +FD M  K 
Sbjct: 238 VLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKD 297

Query: 290 ------------------------------DTQAWSAMIVAYATHGQGHKSILMFEEM-M 318
                                         D  AW+A+I +Y  +G+  +++ +F E+ +
Sbjct: 298 IVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQL 357

Query: 319 KAQVSPDEITFLGLLYACSHTGLVD-EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
                P+E+T    L AC+  G +D  GW + Y    K GI         ++D+  + G 
Sbjct: 358 NKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYI--KKQGIKLNFHITTSLIDMYSKCGH 415

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
           L++A      +  +    +W  +++  + H +   A  +  ++ E
Sbjct: 416 LEKALEVFYSVERRDV-FVWSAMIAGLAMHGHGRAAIDLFSKMQE 459


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/535 (40%), Positives = 334/535 (62%), Gaps = 11/535 (2%)

Query: 27  LLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           +L +CT  R LKQ   IHA    +  ++DL +L  ++N   +     S+E A  LFD++P
Sbjct: 111 MLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAK---CGSLEEAQDLFDKMP 167

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
             D+V +  +  GYS+S     A+ LF ++L+ G  P++++  SLLKA     ++    G
Sbjct: 168 TKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSD--HHG 225

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
           +QLH F++K G + N++V ++L+++YA  + +  A+ IF +++   VVS+NA+I  +AR 
Sbjct: 226 RQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARK 285

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
                 + LF ++  +  +PT  T  S L+ CA  GSL+ GKW+H ++ K G      + 
Sbjct: 286 GEGEHVMRLFXQMLRQGFEPTHFTYSSVLA-CASSGSLEQGKWVHAHVIKSGGQPIAYIG 344

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
             LIDM+AK G + DA  VF  +  +D  +W+++I  YA HG G +++ +FE+M+KA+V 
Sbjct: 345 NTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQ 404

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
           P+EITFL +L ACSH+GL+DEG  Y++ +  K+ I   + H+  +VDLLGRAGRL+EA +
Sbjct: 405 PNEITFLSVLTACSHSGLLDEG-QYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANK 463

Query: 384 FIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443
           FI+E+PIK T  +W  LL +C  H N+ L     E+IFELD    G +V+LSN+ A AGR
Sbjct: 464 FIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGR 523

Query: 444 WEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKM 503
             D   +RK+MK+ GV K P CS +E+ N V  F + D  H    ++Q+  +++  ++K 
Sbjct: 524 LSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKE 583

Query: 504 VGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +GYVPDTS V    M  +++E+ L+YHSEKLA+ F +L TPPG TIR+ KN+R+C
Sbjct: 584 IGYVPDTSHVLFF-MNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRIC 637



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 128/285 (44%), Gaps = 18/285 (6%)

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
           +L+P        L+ C  L  L  G+ IH +I+    +  + +   +++M+AKCG L++A
Sbjct: 100 SLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEA 159

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
             +FD M  KD  +W+ +I  Y+  GQ  +++ +F +M+     P+E T   LL A S T
Sbjct: 160 QDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA-SGT 218

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRT 399
           G  D      ++   KYG    +     ++D+  R   + EA    + L  K+  + W  
Sbjct: 219 GPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNV-VSWNA 277

Query: 400 LLSSCSSHNN----LGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455
           L++  +        + L  Q++ + FE   +H     +L+  CA +G  E   ++     
Sbjct: 278 LIAGHARKGEGEHVMRLFXQMLRQGFE--PTHFTYSSVLA--CASSGSLEQGKWVHA--- 330

Query: 456 DRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
              V+K  G     + N + + ++  G      D +K    LVK+
Sbjct: 331 --HVIKSGGQPIAYIGNTLIDMYAKSGS---IKDAKKVFRRLVKQ 370


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/536 (39%), Positives = 336/536 (62%), Gaps = 10/536 (1%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           +S L +C +   +KQ+HA    T + +DL V  KL+  C ++    +   AHLLF+++ E
Sbjct: 7   ISTLFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVT---AHLLFNKMEE 63

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
            D V ++ M  G+ ++    R    F EL+ +G  PD++S P ++KAC       L  G+
Sbjct: 64  RDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACR--DTMGLIMGR 121

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
            +H   +K GL+ + +VC+TL+++YA+C  ++ A+++F+ + +  +V+   +I  YA   
Sbjct: 122 LIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECG 181

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI--KKYGLDKYVKV 262
           +PNE+  LF +++     P  V M++ +++CA LG+++  + +H+Y+  ++Y LD  V++
Sbjct: 182 KPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLD--VEL 239

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
            TA+IDM+AKCG +D +  +FD M  K+  +WSAMI AY  HGQG +++ +F  M+ + +
Sbjct: 240 GTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGI 299

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            P+ ITF+ LLYACSH GLVD+G   F  M   YG+ P +KHY CMVDLLGRAGRLD+A 
Sbjct: 300 IPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQAL 359

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
           R I+ + ++    +W   L +C  H  + LA++  + +  L   + G Y++LSN+ A AG
Sbjct: 360 RLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAG 419

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           RW+DV  +R LM  R + K+PG + IEV+N++  F +GD  H  S ++ + L  L ++L+
Sbjct: 420 RWKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLE 479

Query: 503 MVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             GYVPDT+ V H D+++E K   L  HSEKLAI FGL+ TP GT IR+ KNLRVC
Sbjct: 480 SAGYVPDTNSVLH-DVDEEVKLGILHAHSEKLAIAFGLIATPDGTPIRITKNLRVC 534


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/521 (41%), Positives = 324/521 (62%), Gaps = 7/521 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K IH   I+      +N+ T L +  ++     S+E A L+FD + +  +V +N+M  GY
Sbjct: 268 KSIHGYAIRAGFAKLVNISTALADMYSK---CGSVETARLIFDGMDQKTVVSWNSMMDGY 324

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            ++  P +AI +F ++L  G+ P   +    L ACA +G   LE GK +H F  +L L S
Sbjct: 325 VQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGD--LERGKFVHKFVDQLNLGS 382

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           ++ V  +LI++Y++C  V+ A  IF N++    VS+NA+I  YA++ R +EAL+ F E++
Sbjct: 383 DISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMK 442

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              +KP   TM+S + + A L      KWIH  I +  LDK + V TAL+DM++KCG + 
Sbjct: 443 SLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIH 502

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            A  +FD +S +    W+AMI  Y THG G  ++ +F++M K  V P++IT+L ++ ACS
Sbjct: 503 MARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACS 562

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H+GLVDEG  +F SM+  YG+ P + HYG MVDLLGRAGR+ EA+ FI+ +PI     ++
Sbjct: 563 HSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVY 622

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             +L +C  H N+ + ++  +++FEL+   GG +V+L+N+ A   +W  V  +RK M+ +
Sbjct: 623 GAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKK 682

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           G+ K PGCS +E+ N V  F+SG   H  S  +   L+ELV E+K  GYVPDT+L+   D
Sbjct: 683 GLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLIL--D 740

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +ED+ +E  L  HSEKLAI FGLLNT PGTTI V KNLRVC
Sbjct: 741 VEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVC 781



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 211/384 (54%), Gaps = 11/384 (2%)

Query: 35  RGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMA 94
           RG K+IH   I      ++  +T ++N   +      ++ A+ +FDR+PE D+V +NT+ 
Sbjct: 165 RG-KEIHGQLITNSFAANVFAMTGVVNMYAK---CRQIDDAYKMFDRMPERDLVSWNTII 220

Query: 95  RGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
            G+S++    +A+ L + + + G  PD  +  ++L A A VG   L  GK +H +AI+ G
Sbjct: 221 AGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGL--LMVGKSIHGYAIRAG 278

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
               + + T L ++Y++C  VE AR IF+ + +  VVS+N+++  Y ++  P +A+++F 
Sbjct: 279 FAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFE 338

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
           ++ E  + PT VT++ AL +CA LG L+ GK++H+++ +  L   + V  +LI M++KC 
Sbjct: 339 KMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCK 398

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
           R+D A  +F+N++G+   +W+AMI+ YA +G+  +++  F EM    + PD  T + ++ 
Sbjct: 399 RVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIP 458

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           A +   +      + + +  +  +   I     +VD+  + G +  A +  D +  +   
Sbjct: 459 ALAELSVTRHA-KWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHV- 516

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIE 418
           I W  ++    +H   GL +  ++
Sbjct: 517 ITWNAMIDGYGTH---GLGRAALD 537



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 204/379 (53%), Gaps = 9/379 (2%)

Query: 24  ALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           A  LL  CTS + L QI  + IK  L N+    TKL++  ++     S+  A  +F+ I 
Sbjct: 52  AAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSK---YGSINEAARVFEPID 108

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEA-LEE 142
           +    L++TM +GY+++ +   A+     +    + P  Y+F  LLK C   G  A L+ 
Sbjct: 109 DKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVC---GDNADLKR 165

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           GK++H   I     +N++  T ++N+YA+C  ++ A ++F+ + E  +VS+N II  +++
Sbjct: 166 GKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQ 225

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
           +    +AL L   +Q+   +P  +T+++ L + A +G L +GK IH Y  + G  K V +
Sbjct: 226 NGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNI 285

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
           +TAL DM++KCG ++ A  +FD M  K   +W++M+  Y  +G+  K+I +FE+M++  +
Sbjct: 286 STALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGI 345

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            P  +T +  L+AC+  G ++ G  + +   D+  +   I     ++ +  +  R+D A 
Sbjct: 346 DPTGVTIMEALHACADLGDLERG-KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIAS 404

Query: 383 RFIDELPIKSTPILWRTLL 401
              + L  + T + W  ++
Sbjct: 405 DIFNNLNGR-THVSWNAMI 422



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 84/213 (39%), Gaps = 5/213 (2%)

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           F  L ER   P+ V    A     L  S+     I   + K GL       T L+ + +K
Sbjct: 34  FHTLSERAHIPSHVYKHPAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSK 93

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
            G +++A  VF+ +  K    +  M+  YA +     ++     M    V P    F  L
Sbjct: 94  YGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYL 153

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L  C     +  G    +           +     +V++  +  ++D+AY+  D +P + 
Sbjct: 154 LKVCGDNADLKRG-KEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERD 212

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
             + W T+++  S +   G AK+ +E +  + D
Sbjct: 213 L-VSWNTIIAGFSQN---GFAKKALELVLRMQD 241


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/555 (39%), Positives = 331/555 (59%), Gaps = 43/555 (7%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLIN---FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMA 94
           +Q+H   +K  LQ ++ V T L+     C Q      ++ A  +FD  P+ D++ +N + 
Sbjct: 159 RQLHGHVLKHGLQYNVFVHTALVQMYLLCGQ------LDTARGVFDVCPKADVITWNMII 212

Query: 95  RGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
             Y++      +  LF+ + +  +LP   +   +L AC+ +  + L  GK++H +     
Sbjct: 213 SAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKL--KDLRTGKKVHSYVKNCK 270

Query: 155 LNSNLYVCTTLINLYAECSD-------------------------------VEAARRIFE 183
           + SNL +   +I++YA+C +                               ++ AR  F+
Sbjct: 271 VESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFD 330

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
            + E   VS+ A+I  Y RS+R  EAL LFR +Q  N+KP + TM+S L++CA LG+L+L
Sbjct: 331 KMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALEL 390

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303
           G+WI  YI +  +   + V  ALIDM+ KCG +D A S+F  MS +D   W+AMIV  A 
Sbjct: 391 GEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAV 450

Query: 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK 363
           +G G K++ MF  M+KA + PDEIT++G+L AC+HTGLVD+G  YF  M  ++GI P I 
Sbjct: 451 NGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIA 510

Query: 364 HYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
           HYGC+VDLL RAGRL EAY  I+ +PIK+  I+W  LL+ C  +    +A+ V+++I EL
Sbjct: 511 HYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILEL 570

Query: 424 DDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGV 483
           +  +G  YV+L N+ A   RW D+  LR++M D+G+ K PGCS IE+N  V EF +GD  
Sbjct: 571 EPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRS 630

Query: 484 HSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNT 543
           H  + ++   LD++ ++LK+ GY PD S V   D+ +E+KE ++  HSEKLAI FGL+N+
Sbjct: 631 HPQTKNIDAKLDKMTQDLKLAGYSPDISEVFL-DIAEEDKENSVFRHSEKLAIAFGLINS 689

Query: 544 PPGTTIRVVKNLRVC 558
           PPG TIR+ KNLR+C
Sbjct: 690 PPGVTIRITKNLRMC 704



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 132/420 (31%), Positives = 214/420 (50%), Gaps = 43/420 (10%)

Query: 1   MATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLI 60
           +A T S   + SPP      T   +SLL  C S   L+Q+H   IK  L  +  +  +++
Sbjct: 25  IAATSSALKSFSPP------THPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVM 78

Query: 61  NFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP 120
            FC  +      ++A  LFD IPEP++ ++NTM RGYSR   P   + L++E+L  G+ P
Sbjct: 79  TFCCTHEY-GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKP 137

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           D Y+FP L K        ALE G+QLH   +K GL  N++V T L+ +Y  C  ++ AR 
Sbjct: 138 DRYTFPFLFKGFT--RDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARG 195

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
           +F+   +  V+++N II+AY +  +  E+  LF  ++++ + PT VT++  LS+C+ L  
Sbjct: 196 VFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKD 255

Query: 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV------------------ 282
           L  GK +H Y+K   ++  + +  A+IDM+A CG +D A+ +                  
Sbjct: 256 LRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSG 315

Query: 283 -------------FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITF 329
                        FD M  KD  +W+AMI  Y    +  +++ +F  M    V PDE T 
Sbjct: 316 FTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTM 375

Query: 330 LGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388
           + +L AC+H G ++ G W   Y  R+K  I   +     ++D+  + G +D+A     E+
Sbjct: 376 VSVLTACAHLGALELGEWIRTYIDRNK--IKNDLFVRNALIDMYFKCGDVDKAESIFREM 433



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 149/307 (48%), Gaps = 9/307 (2%)

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA--ECSDVEA 177
           P  +   SLL+ C     E++++ +Q+HC AIK GLN+N  +   ++      E  D + 
Sbjct: 37  PPTHPLISLLETC-----ESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQY 91

Query: 178 ARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL 237
           ARR+F+ I EP +  +N +I  Y+R   P   +SL+ E+  R +KP   T          
Sbjct: 92  ARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTR 151

Query: 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297
             +L+ G+ +H ++ K+GL   V V+TAL+ M+  CG+LD A  VFD     D   W+ +
Sbjct: 152 DIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMI 211

Query: 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG 357
           I AY   G+  +S  +F  M   QV P  +T + +L ACS    +  G    +S      
Sbjct: 212 ISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTG-KKVHSYVKNCK 270

Query: 358 IVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
           +   +     M+D+    G +D A      +  +   I W T++S  ++   + +A+   
Sbjct: 271 VESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDI-ISWTTIVSGFTNLGEIDVARNYF 329

Query: 418 ERIFELD 424
           +++ E D
Sbjct: 330 DKMPEKD 336



 Score = 42.0 bits (97), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 49/262 (18%), Positives = 100/262 (38%), Gaps = 52/262 (19%)

Query: 25  LSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           +S+L  C     L+    I     +  ++NDL V   LI+   +      ++ A  +F  
Sbjct: 376 VSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFK---CGDVDKAESIFRE 432

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           + + D   +  M  G + +    +A+ +F  +L + +LPD+ ++  +L AC   G     
Sbjct: 433 MSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGL---- 488

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS-----EPCVVSYNAI 196
                                            V+  R+ F  ++     EP +  Y  +
Sbjct: 489 ---------------------------------VDKGRKYFLRMTSQHGIEPNIAHYGCL 515

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           +   AR+ R  EA   +  ++   +K   +   + L+ C +    D+ + + + I +   
Sbjct: 516 VDLLARAGRLKEA---YEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEP 572

Query: 257 DKYVKVNTALIDMHAKCGRLDD 278
           D    V   L +++A C R +D
Sbjct: 573 DNGA-VYVLLCNIYAACKRWND 593


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/563 (39%), Positives = 335/563 (59%), Gaps = 37/563 (6%)

Query: 27  LLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPD 86
           LL   TS   LKQ+HA  +KT+       L+++ + C  N   SS  +A L+F  +   +
Sbjct: 21  LLHNFTSPFELKQLHAHLLKTNSPLSSLPLSRVASVCAFN---SSFSYAKLIFQLLDASE 77

Query: 87  IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQL 146
           +  +NT  R ++   +P  AI LF  L    + PD Y+   +LKAC+ +    +  GK +
Sbjct: 78  VTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRL--LDVRNGKIV 135

Query: 147 HCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRP 206
           H +  KLGL SN+++   +++LYA C ++  AR++F+ + +  V+++N +I    +    
Sbjct: 136 HGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDA 195

Query: 207 NEALSLFRELQERNLK-------------------------------PTDVTMLSALSSC 235
             A  LF E+ ERN++                               P +VT+++ L +C
Sbjct: 196 EGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVAC 255

Query: 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWS 295
           A +G+L LG+ IH++  + G +K ++V   LIDM+ KCG L+DA  +FDNM  +   +WS
Sbjct: 256 ADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWS 315

Query: 296 AMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355
           AMI   A HG+   ++ +F +M+   V P+ +TF+G+L+ACSH G+V++G  YF SM   
Sbjct: 316 AMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRD 375

Query: 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQ 415
           YGIVP I+HYGCMVDL  RAG L EA+ FI  +PI    ++W  LL  C  H N+ LA++
Sbjct: 376 YGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEE 435

Query: 416 VIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVR 475
               + +LD  + G YV+LSN+ A AGRWEDV  +RKLM+DRGV K PG SSI V  VV 
Sbjct: 436 ATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVY 495

Query: 476 EFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLA 535
            F +GD  H  + ++ +  ++L++ +K+ GYVP+TS+V   DME+++KE  L  HSEKLA
Sbjct: 496 NFVAGDDTHPQTEEIFQTWEKLLQRMKLKGYVPNTSVVLL-DMEEDQKEKFLYRHSEKLA 554

Query: 536 ITFGLLNTPPGTTIRVVKNLRVC 558
           + FGL+ T PGT IR++KNLRVC
Sbjct: 555 VVFGLIKTTPGTVIRIMKNLRVC 577


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/555 (39%), Positives = 331/555 (59%), Gaps = 43/555 (7%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLIN---FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMA 94
           +Q+H   +K  LQ ++ V T L+     C Q      ++ A  +FD  P+ D++ +N + 
Sbjct: 138 RQLHGHVLKHGLQYNVFVHTALVQMYLLCGQ------LDTARGVFDVCPKADVITWNMII 191

Query: 95  RGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
             Y++      +  LF+ + +  +LP   +   +L AC+ +  + L  GK++H +     
Sbjct: 192 SAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKL--KDLRTGKKVHSYVKNCK 249

Query: 155 LNSNLYVCTTLINLYAECSD-------------------------------VEAARRIFE 183
           + SNL +   +I++YA+C +                               ++ AR  F+
Sbjct: 250 VESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFD 309

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
            + E   VS+ A+I  Y RS+R  EAL LFR +Q  N+KP + TM+S L++CA LG+L+L
Sbjct: 310 KMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALEL 369

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303
           G+WI  YI +  +   + V  ALIDM+ KCG +D A S+F  MS +D   W+AMIV  A 
Sbjct: 370 GEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAV 429

Query: 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK 363
           +G G K++ MF  M+KA + PDEIT++G+L AC+HTGLVD+G  YF  M  ++GI P I 
Sbjct: 430 NGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIA 489

Query: 364 HYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
           HYGC+VDLL RAGRL EAY  I+ +PIK+  I+W  LL+ C  +    +A+ V+++I EL
Sbjct: 490 HYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILEL 549

Query: 424 DDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGV 483
           +  +G  YV+L N+ A   RW D+  LR++M D+G+ K PGCS IE+N  V EF +GD  
Sbjct: 550 EPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRS 609

Query: 484 HSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNT 543
           H  + ++   LD++ ++LK+ GY PD S V   D+ +E+KE ++  HSEKLAI FGL+N+
Sbjct: 610 HPQTKNIDAKLDKMTQDLKLAGYSPDISEVFL-DIAEEDKENSVFRHSEKLAIAFGLINS 668

Query: 544 PPGTTIRVVKNLRVC 558
           PPG TIR+ KNLR+C
Sbjct: 669 PPGVTIRITKNLRMC 683



 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 132/420 (31%), Positives = 214/420 (50%), Gaps = 43/420 (10%)

Query: 1   MATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLI 60
           +A T S   + SPP      T   +SLL  C S   L+Q+H   IK  L  +  +  +++
Sbjct: 4   IAATSSALKSFSPP------THPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVM 57

Query: 61  NFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP 120
            FC  +      ++A  LFD IPEP++ ++NTM RGYSR   P   + L++E+L  G+ P
Sbjct: 58  TFCCTHEY-GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKP 116

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           D Y+FP L K        ALE G+QLH   +K GL  N++V T L+ +Y  C  ++ AR 
Sbjct: 117 DRYTFPFLFKGFT--RDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARG 174

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
           +F+   +  V+++N II+AY +  +  E+  LF  ++++ + PT VT++  LS+C+ L  
Sbjct: 175 VFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKD 234

Query: 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV------------------ 282
           L  GK +H Y+K   ++  + +  A+IDM+A CG +D A+ +                  
Sbjct: 235 LRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSG 294

Query: 283 -------------FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITF 329
                        FD M  KD  +W+AMI  Y    +  +++ +F  M    V PDE T 
Sbjct: 295 FTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTM 354

Query: 330 LGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388
           + +L AC+H G ++ G W   Y  R+K  I   +     ++D+  + G +D+A     E+
Sbjct: 355 VSVLTACAHLGALELGEWIRTYIDRNK--IKNDLFVRNALIDMYFKCGDVDKAESIFREM 412



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 149/307 (48%), Gaps = 9/307 (2%)

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA--ECSDVEA 177
           P  +   SLL+ C     E++++ +Q+HC AIK GLN+N  +   ++      E  D + 
Sbjct: 16  PPTHPLISLLETC-----ESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQY 70

Query: 178 ARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL 237
           ARR+F+ I EP +  +N +I  Y+R   P   +SL+ E+  R +KP   T          
Sbjct: 71  ARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTR 130

Query: 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297
             +L+ G+ +H ++ K+GL   V V+TAL+ M+  CG+LD A  VFD     D   W+ +
Sbjct: 131 DIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMI 190

Query: 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG 357
           I AY   G+  +S  +F  M   QV P  +T + +L ACS    +  G    +S      
Sbjct: 191 ISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTG-KKVHSYVKNCK 249

Query: 358 IVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
           +   +     M+D+    G +D A      +  +   I W T++S  ++   + +A+   
Sbjct: 250 VESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDI-ISWTTIVSGFTNLGEIDVARNYF 308

Query: 418 ERIFELD 424
           +++ E D
Sbjct: 309 DKMPEKD 315



 Score = 42.0 bits (97), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 49/262 (18%), Positives = 100/262 (38%), Gaps = 52/262 (19%)

Query: 25  LSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           +S+L  C     L+    I     +  ++NDL V   LI+   +      ++ A  +F  
Sbjct: 355 VSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFK---CGDVDKAESIFRE 411

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           + + D   +  M  G + +    +A+ +F  +L + +LPD+ ++  +L AC   G     
Sbjct: 412 MSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGL---- 467

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS-----EPCVVSYNAI 196
                                            V+  R+ F  ++     EP +  Y  +
Sbjct: 468 ---------------------------------VDKGRKYFLRMTSQHGIEPNIAHYGCL 494

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           +   AR+ R  EA   +  ++   +K   +   + L+ C +    D+ + + + I +   
Sbjct: 495 VDLLARAGRLKEA---YEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEP 551

Query: 257 DKYVKVNTALIDMHAKCGRLDD 278
           D    V   L +++A C R +D
Sbjct: 552 DNGA-VYVLLCNIYAACKRWND 572


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/576 (40%), Positives = 339/576 (58%), Gaps = 40/576 (6%)

Query: 20  NTPNALS---LLPRCT---SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQN------- 66
           + PNA +   LL  C    +F   +QIHA  +K   + D    T LI+   +N       
Sbjct: 79  HVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDAR 138

Query: 67  ---------------------PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIR 105
                                 +   +  A  +FD I E D+V +N M  GY  +     
Sbjct: 139 KVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEE 198

Query: 106 AIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAI-KLGLNSNLYVCTT 164
           A+ LF E++ + + PD+ +  S+L ACA  G+  +E G+++H       G  S+L +   
Sbjct: 199 ALELFKEMMRTNVRPDEGTLVSVLSACAQSGS--IELGREIHTLVDDHHGFGSSLKIVNA 256

Query: 165 LINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT 224
            I LY++C DVE A  +FE +S   VVS+N +I  Y   +   EAL LF+E+      P 
Sbjct: 257 FIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPN 316

Query: 225 DVTMLSALSSCALLGSLDLGKWIHEYIKKY--GLDKYVKVNTALIDMHAKCGRLDDAVSV 282
           DVTMLS L +CA LG++D+G+WIH YI K   G+     + T+LIDM+AKCG ++ A  V
Sbjct: 317 DVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQV 376

Query: 283 FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342
           F++M  K   +W+AMI  +A HG+ + +  +F  M K  + PD+IT +GLL ACSH+GL+
Sbjct: 377 FNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLL 436

Query: 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
           D G + F S+   Y I P ++HYGCM+DLLG AG   EA   I  +P++   ++W +LL 
Sbjct: 437 DLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLK 496

Query: 403 SCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKV 462
           +C  H NL LA+   +++ E++  + G YV+LSN+ A AGRWEDV  +R+++  +G+ KV
Sbjct: 497 ACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKV 556

Query: 463 PGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEE 522
           PGCSSIE+++VV EF  GD +H  S ++ + L+E+   L+  G+VPDTS V   +ME+E 
Sbjct: 557 PGCSSIEIDSVVHEFIIGDKLHPQSREIYRMLEEMDVLLEEAGFVPDTSEVLQ-EMEEEW 615

Query: 523 KEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           KE ALR+HSEKLAI FGL++T PGT + VVKNLRVC
Sbjct: 616 KEGALRHHSEKLAIAFGLISTKPGTKLTVVKNLRVC 651



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 125/413 (30%), Positives = 222/413 (53%), Gaps = 36/413 (8%)

Query: 41  HAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRS 100
           HA  +KT L N    L+KL+  C  +P    + +A  +F+   EP+++++NTM RG + S
Sbjct: 2   HAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASS 61

Query: 101 KTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLY 160
              +  + ++V +++ G +P+ Y+FP LLK+CA   ++  EEG+Q+H   +KLG   + Y
Sbjct: 62  SDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCA--KSKTFEEGRQIHAQVMKLGCELDRY 119

Query: 161 V-------------------------------CTTLINLYAECSDVEAARRIFENISEPC 189
                                           CT LI  YA   DV +AR++F+ I+E  
Sbjct: 120 AHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERD 179

Query: 190 VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           VVS+NA+IT Y  +    EAL LF+E+   N++P + T++S LS+CA  GS++LG+ IH 
Sbjct: 180 VVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHT 239

Query: 250 YI-KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
            +   +G    +K+  A I +++KCG ++ A  +F+ +S KD  +W+ +I  Y       
Sbjct: 240 LVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYK 299

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGC 367
           +++L+F+EM+++  SP+++T L +L AC+H G +D G W + Y  +   G+  G      
Sbjct: 300 EALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTS 359

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
           ++D+  + G ++ A++  + +  KS    W  ++   + H     A  +  R+
Sbjct: 360 LIDMYAKCGDIEAAHQVFNSMMHKSLSS-WNAMIFGFAMHGRANAAFDLFSRM 411


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/581 (39%), Positives = 346/581 (59%), Gaps = 34/581 (5%)

Query: 4   TPSPPITQSPPP-----------KLCTN--------TP---NALSLLPRCTSFRGLK--- 38
           +P+P  T S P              C+N        TP   N  SLL  C + + +K   
Sbjct: 36  SPNPSFTSSAPQFDNNQTHLKAIPSCSNPHAESTCLTPTYSNYASLLQSCIARKAIKPGK 95

Query: 39  QIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           Q+HA         D  + TKL+N +C       S+  A LLFDRIP+ +I L+N + RGY
Sbjct: 96  QLHAQVCLAGFGFDTVIATKLVNLYCV----CDSLSSARLLFDRIPKHNIFLWNVLIRGY 151

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           + +     A+ L+ ++ + GL+PD+++FP +LKACA +   A+E G+++H   ++ G   
Sbjct: 152 AWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAAL--SAIEHGREIHEHVVQTGWEK 209

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           +++V   LI++YA+C  V +AR +F+ I     V +N+++ AY+++  P+  LSL  E+ 
Sbjct: 210 DVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMV 269

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              L+PT+ T+++A+S+ A   +L  G+ +H    +   + + KV TAL+DM+AKCG + 
Sbjct: 270 LTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVR 329

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            A ++F+ +  K   +W+AMI  YA HG   +++ +FEEM +    PD ITF+G+L ACS
Sbjct: 330 VARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRV-AKPDHITFVGVLSACS 388

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H GL++EGW +F +M   Y I P ++HY CMVDLLG +GRLDEAY  I ++ +     +W
Sbjct: 389 HGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVW 448

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             LL+SC  H N+ L +  +ER+ EL+    G+YVILSN+ A+AG+WE V  LRKLM DR
Sbjct: 449 GALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDR 508

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
            + K   CS IEV N V  F SGD  H  S ++   L+ +   +K  GY P T  V H D
Sbjct: 509 RLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFH-D 567

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +ED+EK   +  HSE+LAI FGL++TPPGT + + KNLR+C
Sbjct: 568 VEDDEKANMVCSHSERLAIAFGLISTPPGTRLLITKNLRIC 608


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/536 (40%), Positives = 323/536 (60%), Gaps = 11/536 (2%)

Query: 27  LLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           LL  CT    ++Q   +HA  + +H  ++  VL  +I           ++ A  +FD +P
Sbjct: 93  LLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNII--VNMYAKCGCLDDARRMFDEMP 150

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE-ALEE 142
             D+V +  +  G+S++  P  A+ LF ++L  GL P+ ++  SLLKA    G+E  L+ 
Sbjct: 151 TKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKAS---GSEHGLDP 207

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G QLH F +K G  S++YV + L+++YA C  ++AA+  F+ +     VS+NA+I+ +AR
Sbjct: 208 GTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHAR 267

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
                 AL L  ++Q +N +PT  T  S  S+CA +G+L+ GKW+H ++ K GL     +
Sbjct: 268 KGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFI 327

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
              L+DM+AK G +DDA  VFD +   D  +W+ M+   A HG G +++  FE+M++  +
Sbjct: 328 GNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGI 387

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            P+EI+FL +L ACSH+GL+DEG  YF  M+ KY + P + HY   VDLLGR G LD A 
Sbjct: 388 EPNEISFLCVLTACSHSGLLDEGLYYFELMK-KYKVEPDVPHYVTFVDLLGRVGLLDRAE 446

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
           RFI E+PI+ T  +W  LL +C  H N+ L     ER FELD    G  ++LSN+ A AG
Sbjct: 447 RFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAG 506

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           RW DV  +RK+MK+ GV K P CS +E+ N V  F + D  H    +++   +E+  ++K
Sbjct: 507 RWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPQIKEIRGKWEEISGKIK 566

Query: 503 MVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +GYVPDTS V    ++ +E+E  L+YHSEKLA+ F LLNTP G+ IR+ KN+RVC
Sbjct: 567 EIGYVPDTSHVLLF-VDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVC 621


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/521 (41%), Positives = 322/521 (61%), Gaps = 7/521 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K IH   I+      +N+ T L +  ++     S+E A L+FD + +  +V +N+M  GY
Sbjct: 268 KSIHGYAIRAGFAKLVNISTALADMYSK---CGSVETARLIFDGMDQKTVVSWNSMMDGY 324

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            ++  P +AI +F ++L  G+ P   +    L ACA +G   LE GK +H F  +L L S
Sbjct: 325 VQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGD--LERGKFVHKFVDQLNLGS 382

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           ++ V  +LI++Y++C  V+ A  IF N++    VS+NA+I  YA++ R +EAL+ F E++
Sbjct: 383 DISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMK 442

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              +KP   TM+S + + A L      KWIH  I +  LDK + V TAL+DM++KCG + 
Sbjct: 443 SLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIH 502

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            A  +FD +S +    W+AMI  Y THG G  ++ +F++M K  V P++IT+L ++ ACS
Sbjct: 503 MARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACS 562

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H+GLVDEG  +F SM+  YG+ P + HYG MVDLLGRAGR+ EA+ FI+ +PI     ++
Sbjct: 563 HSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVY 622

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
                +C  H N+ + ++  +++FEL+   GG +V+L+N+ A   +W  V  +RK M+ +
Sbjct: 623 GAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKK 682

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           G+ K PGCS +E+ N V  F+SG   H  S  +   L+ELV E+K  GYVPDT+L+   D
Sbjct: 683 GLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLIL--D 740

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +ED+ +E  L  HSEKLAI FGLLNT PGTTI V KNLRVC
Sbjct: 741 VEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVC 781



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 211/384 (54%), Gaps = 11/384 (2%)

Query: 35  RGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMA 94
           RG K+IH   I      ++  +T ++N   +      ++ A+ +FDR+PE D+V +NT+ 
Sbjct: 165 RG-KEIHGQLITNSFAANVFAMTGVVNMYAK---CRQIDDAYKMFDRMPERDLVSWNTII 220

Query: 95  RGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
            G+S++    +A+ L + + + G  PD  +  ++L A A VG   L  GK +H +AI+ G
Sbjct: 221 AGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGL--LMVGKSIHGYAIRAG 278

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
               + + T L ++Y++C  VE AR IF+ + +  VVS+N+++  Y ++  P +A+++F 
Sbjct: 279 FAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFE 338

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
           ++ E  + PT VT++ AL +CA LG L+ GK++H+++ +  L   + V  +LI M++KC 
Sbjct: 339 KMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCK 398

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
           R+D A  +F+N++G+   +W+AMI+ YA +G+  +++  F EM    + PD  T + ++ 
Sbjct: 399 RVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIP 458

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           A +   +      + + +  +  +   I     +VD+  + G +  A +  D +  +   
Sbjct: 459 ALAELSVTRHA-KWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHV- 516

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIE 418
           I W  ++    +H   GL +  ++
Sbjct: 517 ITWNAMIDGYGTH---GLGRAALD 537



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 204/379 (53%), Gaps = 9/379 (2%)

Query: 24  ALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           A  LL  CTS + L QI  + IK  L N+    TKL++  ++     S+  A  +F+ I 
Sbjct: 52  AAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSK---YGSINEAARVFEPID 108

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEA-LEE 142
           +    L++TM +GY+++ +   A+     +    + P  Y+F  LLK C   G  A L+ 
Sbjct: 109 DKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVC---GDNADLKR 165

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           GK++H   I     +N++  T ++N+YA+C  ++ A ++F+ + E  +VS+N II  +++
Sbjct: 166 GKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQ 225

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
           +    +AL L   +Q+   +P  +T+++ L + A +G L +GK IH Y  + G  K V +
Sbjct: 226 NGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNI 285

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
           +TAL DM++KCG ++ A  +FD M  K   +W++M+  Y  +G+  K+I +FE+M++  +
Sbjct: 286 STALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGI 345

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            P  +T +  L+AC+  G ++ G  + +   D+  +   I     ++ +  +  R+D A 
Sbjct: 346 DPTGVTIMEALHACADLGDLERG-KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIAS 404

Query: 383 RFIDELPIKSTPILWRTLL 401
              + L  + T + W  ++
Sbjct: 405 DIFNNLNGR-THVSWNAMI 422



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 84/213 (39%), Gaps = 5/213 (2%)

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           F  L ER   P+ V    A     L  S+     I   + K GL       T L+ + +K
Sbjct: 34  FHTLSERAHIPSHVYKHPAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSK 93

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
            G +++A  VF+ +  K    +  M+  YA +     ++     M    V P    F  L
Sbjct: 94  YGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYL 153

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L  C     +  G    +           +     +V++  +  ++D+AY+  D +P + 
Sbjct: 154 LKVCGDNADLKRG-KEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERD 212

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
             + W T+++  S +   G AK+ +E +  + D
Sbjct: 213 L-VSWNTIIAGFSQN---GFAKKALELVLRMQD 241


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/571 (39%), Positives = 337/571 (59%), Gaps = 33/571 (5%)

Query: 18  CTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQN----------- 66
           C   P  L    +  +FR  +QIH   +K     DL V T LI+   QN           
Sbjct: 88  CYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFD 147

Query: 67  -----------------PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFL 109
                             +   +  A  +FD IP  D+V +N M  GY+ +     A+ L
Sbjct: 148 QSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALEL 207

Query: 110 FVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLY 169
           F E++ + + PD+ +  S++ ACA   + ++E G+Q+H +    G  SNL +   LI+LY
Sbjct: 208 FKEMMKTNVRPDESTMVSVVSACA--QSASIELGRQVHSWIDDHGFGSNLKIVNALIDLY 265

Query: 170 AECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTML 229
            +C +VE A  +FE +S   V+S+N +I  Y   +   EAL LF+E+      P DVTML
Sbjct: 266 IKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTML 325

Query: 230 SALSSCALLGSLDLGKWIHEYIKKY--GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS 287
           S L +CA LG++++G+WIH YI K   G+       T+LIDM+AKCG ++ A  VFD++ 
Sbjct: 326 SILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSIL 385

Query: 288 GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN 347
            +   +W+AMI  +A HG+ + +  +F  M K ++ PD+ITF+GLL ACSH+G++D G +
Sbjct: 386 NRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRH 445

Query: 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
            F SM++ Y I P ++HYGCM+DLLG +G   EA   I+ + ++   ++W +LL +C  H
Sbjct: 446 IFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMH 505

Query: 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSS 467
            N+ L +   + + +++  + G YV+LSN+ A AGRW +V  +R L+ D+G+ KVPGCSS
Sbjct: 506 GNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSS 565

Query: 468 IEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIAL 527
           IE+++VV EF  GD  H  + ++   L+E+   L+  G+VPDTS V   +ME+E KE AL
Sbjct: 566 IEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQ-EMEEEWKEGAL 624

Query: 528 RYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           R+HSEKLAI FGL++T PGT + +VKNLRVC
Sbjct: 625 RHHSEKLAIAFGLISTKPGTKLTIVKNLRVC 655



 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 144/456 (31%), Positives = 254/456 (55%), Gaps = 42/456 (9%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           L+ IHA  IKT L N    L+KLI FC  +P    + +A  +F+ I EP+++++NTM RG
Sbjct: 3   LRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRG 62

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           ++ S  P+ A++L+V +++ GLLP+ Y+FP LLK+CA   ++A  EG+Q+H   +KLG +
Sbjct: 63  HALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCA--KSKAFREGQQIHGHVLKLGYD 120

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY----------------------- 193
            +LYV T+LI++Y +   +E AR++F+  S   VVSY                       
Sbjct: 121 LDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEI 180

Query: 194 --------NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245
                   NA+I+ YA +    EAL LF+E+ + N++P + TM+S +S+CA   S++LG+
Sbjct: 181 PIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGR 240

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
            +H +I  +G    +K+  ALID++ KCG ++ A  +F+ +S KD  +W+ +I  Y    
Sbjct: 241 QVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMN 300

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKH 364
              +++L+F+EM+++  SP+++T L +L AC+H G ++ G W + Y  +   G+     H
Sbjct: 301 LYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSH 360

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI---- 420
              ++D+  + G ++ A +  D +  +S    W  ++   + H     A  +  R+    
Sbjct: 361 RTSLIDMYAKCGDIEAAQQVFDSILNRSLSS-WNAMIFGFAMHGRANAAFDIFSRMRKNE 419

Query: 421 FELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
            E DD     +V L + C+ +G  +   ++ + MK+
Sbjct: 420 IEPDDI---TFVGLLSACSHSGMLDLGRHIFRSMKE 452


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/552 (40%), Positives = 343/552 (62%), Gaps = 13/552 (2%)

Query: 14  PPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSME 73
           P   CT   +   L   CTS    KQ HA+ ++THL ++    +KLI+F   +  +  + 
Sbjct: 4   PSSKCTKLISVDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALS-HSGDLN 62

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
           +A  LF ++  PD  + NTM RGY+RS+ P  A+ L+  ++  G+  D+Y++P +L ACA
Sbjct: 63  YARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACA 122

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
            +GA  L  G++ HC  +K G  S+L+V   LI  Y  C     A  +F+  +   VV++
Sbjct: 123 RLGAVKL--GRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTW 180

Query: 194 NAIITAYARSSRPNEALSLFRELQE-RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           N +I A+       +A  L  E+ +  NL+P +VTM+S + +CA LG+L+ GK++H Y K
Sbjct: 181 NIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSK 240

Query: 253 KYGLDKY-----VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQG 307
           +  LDK+     + + TAL+DM+AKCG +D A+ VF  M  ++   W+A+I   A HG G
Sbjct: 241 E--LDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHG 298

Query: 308 HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367
             +I +F++M   ++ PD++TF+ LL ACSH GLVDEG   F +M++K+ I P ++HYGC
Sbjct: 299 EDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGC 358

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
           +VDLL RA ++D+A  FI+ +PIK+  +LW TLL +C S  +  LA+++  R+ EL+   
Sbjct: 359 VVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDS 418

Query: 428 GGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYS 487
            G YV+LSNL A   +W+    LRK MK++G+ K PGCS IE+N ++ +F +GD  H  +
Sbjct: 419 CGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQT 478

Query: 488 TDLQKALDELVKELKM-VGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPG 546
             +   ++E+ + + +  G+VP T+ V   D+E+EEKE +L  HSEKLAI  GL++TP G
Sbjct: 479 EQIYAMIEEMTRRVNLDGGHVPGTANVLF-DIEEEEKEHSLFLHSEKLAIALGLISTPSG 537

Query: 547 TTIRVVKNLRVC 558
           + IR+VKNLRVC
Sbjct: 538 SPIRIVKNLRVC 549


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/533 (41%), Positives = 323/533 (60%), Gaps = 6/533 (1%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP 85
           SL   C      KQ+H  + K    +D  +   L+N  +       +  A  +FD++   
Sbjct: 145 SLFKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYS---NCGCLVSARKVFDKMVNK 201

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
            +V + TM   Y++   P  AI LF  +  + + P++ +  ++L ACA   +  LE  KQ
Sbjct: 202 SVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACA--RSRDLETAKQ 259

Query: 146 LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSR 205
           +H +  + G+  +  + + L+++Y +C     AR +F  + E  +  +N +I  +   S 
Sbjct: 260 VHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSD 319

Query: 206 PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTA 265
             EALSLF E+Q   +K   VTM S L +C  LG+L+LGKW+H YI+K  ++  V + TA
Sbjct: 320 YEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTA 379

Query: 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
           L+DM+AKCG ++ A+ VF  M  KD   W+A+IV  A  GQG K++ +F EM  ++V PD
Sbjct: 380 LVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPD 439

Query: 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI 385
            ITF+G+L ACSH GLV+EG  YF SM +KYGI P I+HYGCMVD+LGRAGR+ EA   I
Sbjct: 440 AITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLI 499

Query: 386 DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWE 445
             +P+     +   LLS+C  H NL +A++  +++ ELD  +GG YV+LSN+ +    WE
Sbjct: 500 QNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWE 559

Query: 446 DVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVG 505
               +R+LM +R + K PGCS+IEV  VV EF  GD  H  S+++ + LD++++ LK  G
Sbjct: 560 AAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAG 619

Query: 506 YVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           YVPD S V   DM+++EKE  L  HSEKLAI FGLL+T PGT IRVVKNLRVC
Sbjct: 620 YVPDKSEVLF-DMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVC 671



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 215/375 (57%), Gaps = 10/375 (2%)

Query: 28  LPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDI 87
           L +CT+   LKQIHA  ++T L  D    +K++ FC  +  + S+ +A L+F++IP P  
Sbjct: 47  LEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALH-DSGSLPYARLVFNQIPNPTT 105

Query: 88  VLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLH 147
              N++ RGY+    P +AI  +  ++  GL PD ++FPSL K+C       L EGKQLH
Sbjct: 106 FTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCG-----VLCEGKQLH 160

Query: 148 CFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPN 207
           C + KLG  S+ Y+  TL+N+Y+ C  + +AR++F+ +    VVS+  +I AYA+   P+
Sbjct: 161 CHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPH 220

Query: 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267
           EA+ LFR ++  ++KP ++T+++ L++CA    L+  K +H+YI + G+  +  + +AL+
Sbjct: 221 EAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALM 280

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
           D++ KCG    A  +F+ M  K+   W+ MI  +       +++ +F EM  + V  D++
Sbjct: 281 DVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKV 340

Query: 328 TFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
           T   LL AC+H G ++ G W + Y  ++K  +   +     +VD+  + G ++ A R   
Sbjct: 341 TMASLLIACTHLGALELGKWLHVYIEKEKIEV--DVALGTALVDMYAKCGSIESAMRVFQ 398

Query: 387 ELPIKSTPILWRTLL 401
           E+P K   + W  L+
Sbjct: 399 EMPEKDV-MTWTALI 412


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/536 (40%), Positives = 323/536 (60%), Gaps = 11/536 (2%)

Query: 27  LLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           LL  CT    ++Q   +HA  + +H  ++  VL  +I           ++ A  +FD +P
Sbjct: 93  LLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNII--VNMYAKCGCLDDARRMFDEMP 150

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE-ALEE 142
             D+V +  +  G+S++  P  A+ LF ++L  G  P+ ++  SLLKA    G+E  L+ 
Sbjct: 151 TKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKAS---GSEHGLDP 207

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G QLH F +K G  S++YV + L+++YA C  ++AA+  F+ +     VS+NA+I+ +AR
Sbjct: 208 GTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHAR 267

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
                 AL L  ++Q +N +PT  T  S LS+CA +G+L+ GKW+H ++ K GL     +
Sbjct: 268 KGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFI 327

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
              L+DM+AK G +DDA  VFD +   D  +W+ M+   A HG G +++  FE+M++  +
Sbjct: 328 GNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGI 387

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            P+EI+FL +L ACSH+GL+DEG  YF  M+ KY + P + HY   VDLLGR G LD A 
Sbjct: 388 EPNEISFLCVLTACSHSGLLDEGLYYFELMK-KYKVEPDVPHYVTFVDLLGRVGLLDRAE 446

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
           RFI E+PI+ T  +W  LL +C  H N+ L     ER FELD    G  ++LSN+ A AG
Sbjct: 447 RFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAG 506

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           RW DV  +RK+MK+ GV K P CS +E+ N V  F + D  H    +++   +E+  ++K
Sbjct: 507 RWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKEIRGKWEEISGKIK 566

Query: 503 MVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +GYVPDTS V    ++ +E+E  L+YHSEKLA+ F LLNTP G+ IR+ KN+RVC
Sbjct: 567 EIGYVPDTSHVLLF-VDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVC 621


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/553 (39%), Positives = 324/553 (58%), Gaps = 37/553 (6%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K  H + IK  L +D+ +L  LI+F  +      +   + +F  IP  D+V +N+M   +
Sbjct: 156 KAFHGMVIKVLLGSDVFILNSLIHFYAK---CGELGLGYRVFVNIPRRDVVSWNSMITAF 212

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            +   P  A+ LF E+    + P+  +   +L ACA       E G+ +H +  +  +  
Sbjct: 213 VQGGCPEEALELFQEMETQNVKPNGITMVGVLSACA--KKSDFEFGRWVHSYIERNRIGE 270

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY------------------------ 193
           +L +   ++++Y +C  VE A+R+F+ + E  +VS+                        
Sbjct: 271 SLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMP 330

Query: 194 -------NAIITAYARSSRPNEALSLFRELQ-ERNLKPTDVTMLSALSSCALLGSLDLGK 245
                  NA+I+AY +  +P EAL LF ELQ  +  KP +VT++S LS+CA LG++DLG 
Sbjct: 331 NQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGG 390

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
           WIH YIKK G+     + T+LIDM+ KCG L  A+ VF ++  KD   WSAMI   A HG
Sbjct: 391 WIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHG 450

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY 365
            G  +I +F +M + +V P+ +TF  +L ACSH GLV+EG  +F  M   YG++PG+KHY
Sbjct: 451 HGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHY 510

Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
            CMVD+LGRAG L+EA   I+++P+     +W  LL +C+ H N+ LA+Q   ++ EL+ 
Sbjct: 511 ACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEP 570

Query: 426 SHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHS 485
            + G YV+LSN+ A+AG+W+ V  LRKLM+D G+ K PGCSSIEV+ +V EF  GD  H 
Sbjct: 571 GNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHP 630

Query: 486 YSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPP 545
            +  +   LDE+V  L+ +GYVP+ S +     E++ KE AL  HSEKLAI FGL++T  
Sbjct: 631 SAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQ 690

Query: 546 GTTIRVVKNLRVC 558
              IR+VKNLRVC
Sbjct: 691 SQPIRIVKNLRVC 703



 Score =  228 bits (580), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 134/440 (30%), Positives = 236/440 (53%), Gaps = 41/440 (9%)

Query: 4   TPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFC 63
           TP+P        +   N P  LSL+ +C+  + LKQIHA  ++T L  D    ++LI   
Sbjct: 19  TPNPNSITLNNDRYFANHPT-LSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAA 77

Query: 64  TQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN-SGLLPDD 122
             +P   S+++A  +FD+IP P++  +NT+ R Y+ S  P +++ +F+ +L+ S   PD 
Sbjct: 78  ALSPF-PSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDK 136

Query: 123 YSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF 182
           ++FP L+KA + +  E L  GK  H   IK+ L S++++  +LI+ YA+C ++    R+F
Sbjct: 137 FTFPFLIKAASEL--EELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVF 194

Query: 183 ENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242
            NI    VVS+N++ITA+ +   P EAL LF+E++ +N+KP  +TM+  LS+CA     +
Sbjct: 195 VNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFE 254

Query: 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYA 302
            G+W+H YI++  + + + ++ A++DM+ KCG ++DA  +FD M  KD  +W+ M+V YA
Sbjct: 255 FGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYA 314

Query: 303 THG-----QG--------------------------HKSILMFEEMMKAQVS-PDEITFL 330
             G     QG                           +++ +F E+  ++ + PDE+T +
Sbjct: 315 KIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLV 374

Query: 331 GLLYACSHTGLVD-EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389
             L AC+  G +D  GW + Y    K G+         ++D+  + G L +A      + 
Sbjct: 375 STLSACAQLGAMDLGGWIHVYI--KKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVE 432

Query: 390 IKSTPILWRTLLSSCSSHNN 409
            K    +W  +++  + H +
Sbjct: 433 RKDV-FVWSAMIAGLAMHGH 451


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/537 (40%), Positives = 333/537 (62%), Gaps = 10/537 (1%)

Query: 25  LSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           +S+LP  ++ R +   K+IH   +++   + +N+ T L++   +     S+E A  LFD 
Sbjct: 240 VSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAK---CGSLETARQLFDG 296

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           + E ++V +N+M   Y +++ P  A+ +F ++L+ G+ P D S    L ACA +G   LE
Sbjct: 297 MLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGD--LE 354

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G+ +H  +++LGL+ N+ V  +LI++Y +C +V+ A  +F  +    +VS+NA+I  +A
Sbjct: 355 RGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFA 414

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++ RP +AL+ F +++ R +KP   T +S +++ A L      KWIH  + +  LDK V 
Sbjct: 415 QNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVF 474

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V TAL+DM+AKCG +  A  +FD MS +    W+AMI  Y THG G  ++ +FEEM K  
Sbjct: 475 VTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGT 534

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           + P+ +TFL ++ ACSH+GLV+ G   FY M++ Y I   + HYG MVDLLGRAGRL+EA
Sbjct: 535 IKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEA 594

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
           + FI ++P+K    ++  +L +C  H N+  A++  ER+FEL+   GG +V+L+N+   A
Sbjct: 595 WDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAA 654

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
             WE V  +R  M  +G+ K PGCS +E+ N V  FFSG   H  S  +   L++L+  +
Sbjct: 655 SMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHI 714

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K  GYVPDT+LV    +E++ KE  L  HSEKLAI+FGLLNT  GTTI V KNLRVC
Sbjct: 715 KEAGYVPDTNLVL--GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVC 769



 Score =  201 bits (511), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 118/382 (30%), Positives = 213/382 (55%), Gaps = 12/382 (3%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFD 80
           P AL LL RC+S + L+QI  +  K  L  +    TKL++ FC       S++ A  +F+
Sbjct: 39  PAAL-LLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRY----GSVDEAARVFE 93

Query: 81  RIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEA- 139
            I     VL++TM +G+++     +A+  FV +    + P  Y+F  LLK C   G EA 
Sbjct: 94  PIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVC---GDEAE 150

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
           L  GK++H   +K G + +L+  T L N+YA+C  V  AR++F+ + E  +VS+N I+  
Sbjct: 151 LRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAG 210

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
           Y+++     AL + + + E NLKP+ +T++S L + + L  + +GK IH Y  + G D  
Sbjct: 211 YSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSL 270

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           V ++TAL+DM+AKCG L+ A  +FD M  ++  +W++MI AY  +    +++L+F++M+ 
Sbjct: 271 VNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLD 330

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
             V P +++ +G L+AC+  G ++ G  + + +  + G+   +     ++ +  +   +D
Sbjct: 331 EGVKPTDVSVMGALHACADLGDLERG-RFIHKLSVELGLDRNVSVVNSLISMYCKCKEVD 389

Query: 380 EAYRFIDELPIKSTPILWRTLL 401
            A     +L  + T + W  ++
Sbjct: 390 TAASMFGKLQSR-TLVSWNAMI 410



 Score = 45.8 bits (107), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 87/208 (41%), Gaps = 11/208 (5%)

Query: 216 LQERNLKPTDVTMLSA---LSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           L ERN  P +V    A   L  C+ L  L   + I   + K GL +     T L+ +  +
Sbjct: 25  LSERNYIPANVYEHPAALLLERCSSLKEL---RQILPLVFKNGLYQEHFFQTKLVSLFCR 81

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
            G +D+A  VF+ +  K    +  M+  +A      K++  F  M    V P    F  L
Sbjct: 82  YGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYL 141

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L  C     +  G    + +  K G    +     + ++  +  +++EA +  D +P + 
Sbjct: 142 LKVCGDEAELRVG-KEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERD 200

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERI 420
             + W T+++  S +   G+A+  +E +
Sbjct: 201 L-VSWNTIVAGYSQN---GMARMALEMV 224


>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/523 (42%), Positives = 336/523 (64%), Gaps = 9/523 (1%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           + ++HA  +KT   N    L +L+  C  +   +S+ +A  +FD I  PD   FNT+ R 
Sbjct: 4   IYKLHARLLKTGHHNHPLALRRLLLSCAAS-APASLSYARSIFDLIAFPDTFAFNTIIRA 62

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           ++   +P  ++ LF ++  +G+ PD ++FP +LKACA      L+ G  LH    KLG +
Sbjct: 63  HA-DSSPSFSLSLFSKMAMAGVSPDHFTFPFVLKACA-----RLQTGLDLHSLLFKLGFD 116

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
           S++YV   LI+ Y  C  ++ A ++FE + E  +VS++++I  +A++    EAL+LF+ +
Sbjct: 117 SDVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRM 176

Query: 217 Q-ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
           Q    +KP +V +LS +S+ ++LG L+LGKWI  +I + GL+  V + TAL+DM ++CG 
Sbjct: 177 QLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGC 236

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           +++++ VFD M  ++   W+A+I   A HG+  +++ MF EM      PD +TF G+L A
Sbjct: 237 IEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVA 296

Query: 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
           CSH GLV EGW+ F S+R++YG+ P  +HYGCMVDLLGRAG L+EA +F+D +PI+   I
Sbjct: 297 CSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSI 356

Query: 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455
           +WRTLL +C +HN + LA++V E+I ELD  H GDYV+LSN+    GRW +   +R  M+
Sbjct: 357 IWRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMR 416

Query: 456 DRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHH 515
           ++ + K PGCS I VN+++ EF +GD  H     +++ L  ++  LK+VGY PD S V  
Sbjct: 417 EKRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLF 476

Query: 516 GDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            D+E+EEKE  L YHSEKLA+ F LL      TIRV+KNLR+C
Sbjct: 477 -DIEEEEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRIC 518


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/577 (39%), Positives = 339/577 (58%), Gaps = 43/577 (7%)

Query: 22  PNALS---LLPRCT---SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQN--------- 66
           PN+ S   LL  C    +F   +QIHA  +K     D  V T LI+   +N         
Sbjct: 62  PNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKV 121

Query: 67  -------------------PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAI 107
                               +      A  +FD I E D+V +N M  GY  +     A+
Sbjct: 122 FDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEAL 181

Query: 108 FLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL----GLNSNLYVCT 163
            LF E++ + + PD+ +  S++ ACA  G+  +E G+Q+H +        G +S+L +  
Sbjct: 182 ELFKEMMRTNVRPDEGTLVSVVSACAQSGS--IELGRQVHSWVDDDDDDHGFSSSLKIVN 239

Query: 164 TLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKP 223
            LI+LY++C DVE A  +FE +S   VVS+N +I  Y  ++   EAL LF+E+      P
Sbjct: 240 ALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECP 299

Query: 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKY--GLDKYVKVNTALIDMHAKCGRLDDAVS 281
            DVT+LS L +CA LG++D+G+WIH YI K   G+     + T+LIDM+AKCG ++ A  
Sbjct: 300 NDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQ 359

Query: 282 VFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341
           VF++M  +   +W+AMI  +A HG+ + +  +F  M   +V PD+ITF+GLL ACSH+GL
Sbjct: 360 VFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGL 419

Query: 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
           +D G   F SM   Y + P ++HYGCM+DLLG +G   EA   I  +P++   ++W +LL
Sbjct: 420 LDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLL 479

Query: 402 SSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLK 461
            +C  H NL LA+   +++ +++  + G YV+LSN+ A AGRWEDV  +R ++  +G+ K
Sbjct: 480 KACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKK 539

Query: 462 VPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDE 521
           VPGCSSIEV++VV EF  GD +H    ++   L+E+  +L+  G+ PDTS V   +ME+E
Sbjct: 540 VPGCSSIEVDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQ-EMEEE 598

Query: 522 EKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            KE ALR+HSEKLAI FGL++T PGT + +VKNLRVC
Sbjct: 599 WKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVC 635



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 128/424 (30%), Positives = 230/424 (54%), Gaps = 46/424 (10%)

Query: 59  LINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118
           L+  C  +P    + +A  +F+ I EP+++++NTM RG++ S  P+ A+ ++V +++ G 
Sbjct: 1   LLELCVVSPHFDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGH 60

Query: 119 LPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYV----------------- 161
           LP+ YSFP LLK+CA   ++A EEG+Q+H   +KLG   + YV                 
Sbjct: 61  LPNSYSFPFLLKSCA--KSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDA 118

Query: 162 --------------CTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPN 207
                         CT LI  YA   D  +AR++F+ I+E  VVS+NA+IT Y  + R  
Sbjct: 119 RKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYE 178

Query: 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI----KKYGLDKYVKVN 263
           EAL LF+E+   N++P + T++S +S+CA  GS++LG+ +H ++      +G    +K+ 
Sbjct: 179 EALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIV 238

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
            ALID+++KCG ++ A  +F+ +S KD  +W+ +I  Y       +++L+F+EM+++   
Sbjct: 239 NALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGEC 298

Query: 324 PDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
           P+++T L +L AC+H G +D G W + Y  +   G+         ++D+  + G ++ A+
Sbjct: 299 PNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAH 358

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI----FELDDSHGGDYVILSNLC 438
           +  + +  +S    W  ++   + H     A  +  R+     E DD     +V L + C
Sbjct: 359 QVFNSMLYRSLSS-WNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDI---TFVGLLSAC 414

Query: 439 ARAG 442
           + +G
Sbjct: 415 SHSG 418


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/592 (38%), Positives = 347/592 (58%), Gaps = 45/592 (7%)

Query: 6   SPPITQSPPPKLCTNT-PNA-----LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKL 59
           S PI QSP      N  P +     + LL    S   L+Q+HA  IKT+    +  LT++
Sbjct: 7   SFPIPQSPNRNQIHNVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRV 66

Query: 60  INFCTQNPTTSSMEHAHLLFDRIPE--PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSG 117
              C   P   S  +A  +F  + +  P+  ++N+  +  +   +PI AI LF  L    
Sbjct: 67  GLVCAFTP---SFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYD 123

Query: 118 LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEA 177
           + PD ++  S+L+AC  +    L  G+ LH    K+G  SNLY+   +++LYA C ++  
Sbjct: 124 VCPDTFTCSSVLRAC--LNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGE 181

Query: 178 ARRIFENISEPCVVSYN-------------------------------AIITAYARSSRP 206
           AR +FE + +  VV++N                               ++I  Y +  + 
Sbjct: 182 ARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKA 241

Query: 207 NEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
            EA+ LF +++E  +K  +VT+++ L++CA LG+LDLG  IHEY  ++G  + V+++  L
Sbjct: 242 KEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTL 301

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           IDM+ KCG L++A  VF+ M  +   +WSAMI   A HG+  +++ +F +M +  + P+ 
Sbjct: 302 IDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNG 361

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
           +TF+GLL+ACSH GL+ EG  +F SM   YGI+P I+HYGCMVDLL RAG L EA+ FI 
Sbjct: 362 VTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFIL 421

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWED 446
            +P+K   ++W  LL +C  H N+ +A++ I+ + ELD  + G YV+LSN+ A AGRWED
Sbjct: 422 NMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWED 481

Query: 447 VDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGY 506
              +RK MKDR V K PG SSI V+ VV EF +G+  H  +  + +  +EL++E+++ GY
Sbjct: 482 TARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGY 541

Query: 507 VPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           VP+TS+V   D+E+ EK   +  HSEKLA+ FGL+NTP  T IR++KNLR+C
Sbjct: 542 VPNTSVVLL-DIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRIC 592


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/563 (37%), Positives = 344/563 (61%), Gaps = 35/563 (6%)

Query: 28  LPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQ-NPTTSSMEHAHLLFDRIPEPD 86
           L  C+    LK IHA  I+TH+  D+   ++LI FC   +  TS +++A  +F +I  P+
Sbjct: 24  LETCSDLTHLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPN 83

Query: 87  IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQL 146
           + +FN M RG+S SK P +A   +V+    GLLPD+ +FP L+K+C  +    +  G Q 
Sbjct: 84  LFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKL--HCISMGSQA 141

Query: 147 HCFAIKLGLNSNLYVCTTLINLYA-------------------------------ECSDV 175
           H   IK G   ++YV  +L+++YA                               +C DV
Sbjct: 142 HGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDV 201

Query: 176 EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSC 235
           E+AR++F+ + E  +V+++ +I+ YA+++  ++A+ LF+ LQ + ++  +  M+S +SSC
Sbjct: 202 ESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSC 261

Query: 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWS 295
           A LG+L+LG+  H+Y+ K G+   + + TAL+DM+A+CG +D AV VF+++  +DT +W+
Sbjct: 262 AHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWT 321

Query: 296 AMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355
           A+I   A HG   +S+  F  M++A ++P +ITF  +L ACSH GLV+ G+  F SM+  
Sbjct: 322 ALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRD 381

Query: 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQ 415
           + + P ++HYGCMVDLLGRAG+L+EA RF+ ++P+K    +W  LL +C  H N  + ++
Sbjct: 382 HRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGER 441

Query: 416 VIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVR 475
           V + + +L   H G YV+LSN+ A A  WE V  +R++MK +G+ K PG S IE++  V 
Sbjct: 442 VGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVH 501

Query: 476 EFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLA 535
           +F  GD  H     +++  +E++  ++  GY  +T+     D+++EEKE AL  HSEKLA
Sbjct: 502 KFTIGDSSHPEMDKIERMWEEILMRIRAAGYRGNTADALF-DIDEEEKESALHRHSEKLA 560

Query: 536 ITFGLLNTPPGTTIRVVKNLRVC 558
           I FG++ +  GT IR+VKNLRVC
Sbjct: 561 IAFGMMRSEAGTPIRIVKNLRVC 583


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/592 (38%), Positives = 348/592 (58%), Gaps = 45/592 (7%)

Query: 6   SPPITQSPPP------KLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKL 59
           S PI QSP        K  ++    + LL    S   L+Q+HA  IKT+    +  LT++
Sbjct: 7   SFPIPQSPNRNQIHHVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRV 66

Query: 60  INFCTQNPTTSSMEHAHLLFDRI--PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSG 117
              C   P   S  +A  +F+ +   +P+  ++N+  +  +   +PI AI LF  L    
Sbjct: 67  GLVCAFTP---SFHYAQQIFECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYD 123

Query: 118 LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEA 177
           + PD ++  S+L+AC  +    L  G+ LH    K+G  SNLY+   +++LYA C ++  
Sbjct: 124 VCPDTFTCSSVLRAC--LNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGE 181

Query: 178 ARRIFENISEPCVVSYN-------------------------------AIITAYARSSRP 206
           AR +FE + +  VV++N                               ++I  Y +  + 
Sbjct: 182 ARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKA 241

Query: 207 NEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
            EA+ LF +++E  +K  +VT+++ L++CA LG+LDLG  IHEY  ++G  + V+++  L
Sbjct: 242 KEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTL 301

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           IDM+ KCG L++A  VF+ M  +   +WSAMI   A HG+  +++ +F +M +  + P+ 
Sbjct: 302 IDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNG 361

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
           +TF+GLL+ACSH GL+ EG  +F SM   YGI+P I+HYGCMVDLL RAG L EA+ FI 
Sbjct: 362 VTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFIL 421

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWED 446
            +P+K   ++W  LL +C  H N+ +A++ I+ + ELD  + G YV+LSN+ A AGRWED
Sbjct: 422 NMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWED 481

Query: 447 VDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGY 506
              +RK MKDR V K PG SSI V+ VV EF +G+  H  +  + +  +EL++E+++ GY
Sbjct: 482 TARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGY 541

Query: 507 VPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           VP+TS+V   D+E+ EK   +  HSEKLA+ FGL+NTP  T IR++KNLR+C
Sbjct: 542 VPNTSVVLL-DIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRIC 592


>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/523 (42%), Positives = 335/523 (64%), Gaps = 9/523 (1%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           + ++HA  +KT   N    L +L+  C  +   +S+ +A  +FD I  PD   FNT+ R 
Sbjct: 4   IYKLHARLLKTGHHNHPLALRRLLLSCAAS-APASLSYARSIFDLIAFPDTFAFNTIIRA 62

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           ++   +P  ++ LF ++  +G+ PD ++FP +LKACA      L+ G  LH    KLG +
Sbjct: 63  HA-DSSPSFSLSLFSKMTMAGVSPDHFTFPFVLKACA-----RLQTGLDLHSLLFKLGFD 116

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
           S++YV   LI+ Y  C  ++ A + FE + E  +VS++++I  +A++    EAL+LF+ +
Sbjct: 117 SDVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRM 176

Query: 217 Q-ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
           Q    +KP +V +LS +S+ ++LG L+LGKWI  +I + GL+  V + TAL+DM ++CG 
Sbjct: 177 QLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGC 236

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           +++++ VFD M  ++   W+A+I   A HG+  +++ MF EM      PD +TF G+L A
Sbjct: 237 IEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVA 296

Query: 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
           CSH GLV EGW+ F S+R++YG+ P  +HYGCMVDLLGRAG L+EA +F+D +PI+   I
Sbjct: 297 CSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSI 356

Query: 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455
           +WRTLL +C +HN + LA++V E+I ELD  H GDYV+LSN+    GRW +   +R  M+
Sbjct: 357 IWRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMR 416

Query: 456 DRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHH 515
           ++ + K PGCS I VN+++ EF +GD  H     +++ L  ++  LK+VGY PD S V  
Sbjct: 417 EKRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLF 476

Query: 516 GDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            D+E+EEKE  L YHSEKLA+ F LL      TIRV+KNLR+C
Sbjct: 477 -DIEEEEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRIC 518


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/538 (39%), Positives = 328/538 (60%), Gaps = 14/538 (2%)

Query: 26  SLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           +LL +CT F+ L Q   +H   I++  ++DL +   L+N   +     S+E A  +FD++
Sbjct: 56  TLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAK---CGSLEEARKVFDKM 112

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           PE D V + T+  GYS+   P  A+ LF ++L  G  P++++  S++KA A         
Sbjct: 113 PERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCC-- 170

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G QLH F +K G +SN++V + L++LY     ++ A+ +F+ +     VS+NA+I  +AR
Sbjct: 171 GHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHAR 230

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
                +AL LF+ +     +P+  +  S   +C+  G L+ GKW+H Y+ K G       
Sbjct: 231 RCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFA 290

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
              L+DM+AK G + DA  +FD ++ +D  +W++++ AYA HG G++++  FEEM +  +
Sbjct: 291 GNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGI 350

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            P+EI+FL +L ACSH+GL+DEGW+Y Y +  K GIV    HY  +VDLLGRAG L+ A 
Sbjct: 351 RPNEISFLSVLTACSHSGLLDEGWHY-YELMKKDGIVLEAWHYVTIVDLLGRAGDLNRAL 409

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
           RFI+E+PI+ T  +W+ LL++C  H N  L     E +FELD    G +VIL N+ A  G
Sbjct: 410 RFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGG 469

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           RW D   +RK MK+ GV K P CS +E+ N +  F + D  H    ++ +  +E++ ++K
Sbjct: 470 RWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIK 529

Query: 503 MVGYVPDTS--LVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +GYVPDTS  +VH   ++ +E+E+ L+YHSEK+A+ F LLNTPPG+TI + KN+RVC
Sbjct: 530 ELGYVPDTSHVIVH---VDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVC 584


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/538 (38%), Positives = 329/538 (61%), Gaps = 14/538 (2%)

Query: 26  SLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           +LL +CT F+ L Q   +HA  +++  ++D+ +   L+N   +     S+E A  +F+++
Sbjct: 65  TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAK---CGSLEEARKVFEKM 121

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           P+ D V + T+  GYS+   P  A+  F ++L  G  P++++  S++KA A         
Sbjct: 122 PQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCC-- 179

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G QLH F +K G +SN++V + L++LY     ++ A+ +F+ +     VS+NA+I  +AR
Sbjct: 180 GHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHAR 239

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
            S   +AL LF+ +     +P+  +  S   +C+  G L+ GKW+H Y+ K G       
Sbjct: 240 RSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFA 299

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
              L+DM+AK G + DA  +FD ++ +D  +W++++ AYA HG G +++  FEEM +  +
Sbjct: 300 GNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGI 359

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            P+EI+FL +L ACSH+GL+DEGW+Y Y +  K GIVP   HY  +VDLLGRAG L+ A 
Sbjct: 360 RPNEISFLSVLTACSHSGLLDEGWHY-YELMKKDGIVPEAWHYVTVVDLLGRAGDLNRAL 418

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
           RFI+E+PI+ T  +W+ LL++C  H N  L     E +FELD    G +VIL N+ A  G
Sbjct: 419 RFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGG 478

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           RW D   +RK MK+ GV K P CS +E+ N +  F + D  H    ++ +  +E++ ++K
Sbjct: 479 RWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIK 538

Query: 503 MVGYVPDTS--LVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +GYVPDTS  +VH   ++ +E+E+ L+YHSEK+A+ F LLNTPPG+TI + KN+RVC
Sbjct: 539 ELGYVPDTSHVIVH---VDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVC 593


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/574 (38%), Positives = 341/574 (59%), Gaps = 32/574 (5%)

Query: 7   PPITQSPPPKLCTNTPNA----LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINF 62
           PP + + P     NTPN     +SLL  C     +  I+A  I+ H   D  V+ +L+  
Sbjct: 18  PPNSGTKPK----NTPNRRRHFISLLQNCKHNNQIPPIYAKIIRNHHHQDPFVVFELLRV 73

Query: 63  CTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDD 122
           C+     +S+ +A  +F     P++ L+  +  G   S      I L+ +++NS L+PD 
Sbjct: 74  CS---NLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDS 130

Query: 123 YSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF 182
           Y+  S+LKAC C    AL+EG+++H   +KLGL+SN  +   LI LY +C   E ARR+F
Sbjct: 131 YAVTSVLKACGC--HLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVF 188

Query: 183 ENISEPCVVS------------------YNAIITAYARSSRPNEALSLFRELQERNLKPT 224
           + + E  VV+                  + A+I    R+   N AL +FR +Q  ++ P 
Sbjct: 189 DEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPN 248

Query: 225 DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFD 284
           +VT++  LS+C+ LG+L LG+W+  Y+ K+ ++    V  ALI+M+++CG +D+A  VF+
Sbjct: 249 EVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFE 308

Query: 285 NMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDE 344
            M  K+   +++MI+ +A HG+  +++ +F  ++K   +P  +TF+G+L ACSH GL + 
Sbjct: 309 QMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAEL 368

Query: 345 GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSC 404
           G+  F+SM   YGI P I+HYGCMVDLLGR GRL+EAY FI  + +    ++   LLS+C
Sbjct: 369 GFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSAC 428

Query: 405 SSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPG 464
             H NL LA++V + +    ++  G Y++LSN  + +G+W++   +R  M++ G+ K PG
Sbjct: 429 KIHGNLELAERVAKSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPG 488

Query: 465 CSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKE 524
           CSSIEVNN + EF  GD  H     + K L+EL + L++ GY P T +V H D+E  EKE
Sbjct: 489 CSSIEVNNEIHEFLLGDLRHPQKEKIYKKLEELNQILRLEGYTPATEVVLH-DIEKSEKE 547

Query: 525 IALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            AL  HSE+LAI +GL++T P TT+RVVKNLRVC
Sbjct: 548 WALAIHSERLAICYGLISTKPLTTLRVVKNLRVC 581


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/538 (38%), Positives = 329/538 (61%), Gaps = 14/538 (2%)

Query: 26  SLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           +LL +CT F+ L Q   +HA  +++  ++D+ +   L+N   +     S+E A  +F+++
Sbjct: 65  TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAK---CGSLEEARKVFEKM 121

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           P+ D V + T+  GYS+   P  A+  F ++L  G  P++++  S++KA A         
Sbjct: 122 PQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCC-- 179

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G QLH F +K G +SN++V + L++LY     ++ A+ +F+ +     VS+NA+I  +AR
Sbjct: 180 GHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHAR 239

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
            S   +AL LF+ +     +P+  +  S   +C+  G L+ GKW+H Y+ K G       
Sbjct: 240 RSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFA 299

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
              L+DM+AK G + DA  +FD ++ +D  +W++++ AYA HG G +++  FEEM +  +
Sbjct: 300 GNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGI 359

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            P+EI+FL +L ACSH+GL+DEGW+Y Y +  K GIVP   HY  +VDLLGRAG L+ A 
Sbjct: 360 RPNEISFLSVLTACSHSGLLDEGWHY-YELMKKDGIVPEAWHYVTVVDLLGRAGDLNRAL 418

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
           RFI+E+PI+ T  +W+ LL++C  H N  L     E +FELD    G +VIL N+ A  G
Sbjct: 419 RFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGG 478

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           RW D   +RK MK+ GV K P CS +E+ N +  F + D  H    ++ +  +E++ ++K
Sbjct: 479 RWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIK 538

Query: 503 MVGYVPDTS--LVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +GYVPDTS  +VH   ++ +E+E+ L+YHSEK+A+ F LLNTPPG+TI + KN+RVC
Sbjct: 539 ELGYVPDTSHVIVH---VDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVC 593


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/527 (40%), Positives = 345/527 (65%), Gaps = 12/527 (2%)

Query: 37  LKQIHAVTIKTHLQNDLNV---LTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM 93
           L+QIHA  I TH+    +V   ++K+++F   +P   + ++A  +F +IP P I  +N++
Sbjct: 4   LRQIHA-RILTHVPPISSVSFLISKILSFAALSPF-GNFDYARKIFSQIPNPGIFAYNSV 61

Query: 94  ARGYSRSKTPIRA-IFLFVELLNSGLL-PDDYSFPSLLKACACVGAEALEEGKQLHCFAI 151
            RG   +K P +  I LF +++  G   P+ ++   +LKAC+ +   ALEEGKQ+H   +
Sbjct: 62  IRGCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAFVLKACSII--MALEEGKQIHAQIL 119

Query: 152 KLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALS 211
           + G +S+ YV ++L+N Y++C ++  AR++F+ I+E  +V ++A+++ YAR    NEAL 
Sbjct: 120 RSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEALI 179

Query: 212 LFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271
           +FRE+Q   ++P +V+++  LS+CA++G+LD+GKW+H YIKK  +   +++NTALI+M+A
Sbjct: 180 MFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYA 239

Query: 272 KCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLG 331
           KCG ++ A  +FD M  KD++AWS+MIV  A HG    ++ +F  M +AQ  P+ +TF+G
Sbjct: 240 KCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIG 299

Query: 332 LLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIK 391
           +L AC+H GLV +G  Y+ SM +  GI P ++HYGCMVDLL R G +DEAY F   +P  
Sbjct: 300 ILSACAHGGLVSDGKRYWSSMLE-LGIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIP-T 357

Query: 392 STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLR 451
             P++WRTLL + + +  L  A+ V  ++ EL+     +Y+IL+NL A   + E V ++R
Sbjct: 358 PDPVIWRTLLVAYTKNRMLQKAEMVAGKLLELEPWKAENYIILANLYASVSQLEKVSHVR 417

Query: 452 KLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTS 511
           K+MK+ G+  +PGC+SIEV+  V  F +GD  H  + +++K L ++  ++ + GY P  S
Sbjct: 418 KMMKENGIKALPGCTSIEVDGFVHNFVTGDWSHPEAEEIKKTLRDVALKILISGYKPFVS 477

Query: 512 LVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +V H  + DEEKE  L  HSE+LAI +GL+ T    TIR+VKNLRVC
Sbjct: 478 VVLH-LVNDEEKENVLYEHSERLAIAYGLMKTKAPATIRIVKNLRVC 523


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/567 (39%), Positives = 331/567 (58%), Gaps = 38/567 (6%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH-LLFDRIP 83
           LS L +C +   LKQIHA  +K+ L  D   +TK +   +   ++S   +AH + F+   
Sbjct: 15  LSCLQKCPTEVELKQIHARMLKSGLLQDPYAMTKFL---SFCLSSSFSSYAHDVFFNGFD 71

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
            PD  L+N M RG S S  P R++ L+  +L      + Y+FP LLKAC+ + A   +E 
Sbjct: 72  RPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSA--FQET 129

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
            Q+H    K G   ++Y   +LIN YA   + + A  +F+ I EP  VS+N++I  Y ++
Sbjct: 130 TQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKA 189

Query: 204 SRPN--------------------------------EALSLFRELQERNLKPTDVTMLSA 231
              +                                EAL LF E+Q  N+ P +V++ SA
Sbjct: 190 GEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASA 249

Query: 232 LSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDT 291
           LS+C+ LG+L+ GKWIH Y  K        +   LIDM+AKCG +++A+ VF NM  K  
Sbjct: 250 LSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSV 309

Query: 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYS 351
           Q W+A+I  YA HG G ++I  F EM    V P+ ITF  +L ACS+TGLV+EG + F +
Sbjct: 310 QVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNT 369

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
           +   Y + P I+HYGCMVDLLGRAG L+EA RFI ++P+K   ++W +LL +C  H N+ 
Sbjct: 370 IERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIE 429

Query: 412 LAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVN 471
           L +++ E + E+D +HGG YV ++N+ A   +W+     R+LM+++GV+KVPGCS+I + 
Sbjct: 430 LGEKIGEILIEMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISLE 489

Query: 472 NVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHS 531
               EF +GD  H+   +++     + ++L+  GYVP+   +    ++DEEKE  +  HS
Sbjct: 490 GTTHEFLAGDRSHAEIQEIRTKWRFVRRKLEENGYVPELEDMLLDLVDDEEKEAIVHQHS 549

Query: 532 EKLAITFGLLNTPPGTTIRVVKNLRVC 558
           EKLAIT+GL+ T PGTTIR++KNLRVC
Sbjct: 550 EKLAITYGLMKTKPGTTIRIMKNLRVC 576



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 175/350 (50%), Gaps = 50/350 (14%)

Query: 17  LCTNTP-NALS---LLPRCT---SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTT 69
           LC + P NA +   LL  C+   +F+   QIHA   K    +D+  +  LIN       T
Sbjct: 102 LCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAHITKFGYGHDIYAVNSLIN---SYAVT 158

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRS-----------KTPIR------------- 105
            + +HAHLLFDRI EPD V +N++ +GY ++           K P +             
Sbjct: 159 GNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGY 218

Query: 106 --------AIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
                   A+ LF E+ NS + PD+ S  S L AC+ +G  ALE+GK +H +A K     
Sbjct: 219 VQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLG--ALEQGKWIHSYANKTRTRI 276

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           +  +C  LI++YA+C ++E A  +F+N+    V  + A+I+ YA      EA+S F E+Q
Sbjct: 277 DSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKFLEMQ 336

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK-YGLDKYVKVNTALIDMHAKCGRL 276
              +KP  +T  + L++C+  G ++ GK +   I++ Y L   ++    ++D+  + G L
Sbjct: 337 NMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLL 396

Query: 277 DDAVSVFDNMSGK-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
           ++A      M  K +   W +++ A     Q HK+I + E++ +  +  D
Sbjct: 397 NEANRFIQKMPLKPNAVIWGSLLKA----CQIHKNIELGEKIGEILIEMD 442


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/553 (38%), Positives = 339/553 (61%), Gaps = 11/553 (1%)

Query: 8   PITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNP 67
           P+T++   +  +++P   +LL      R L+Q+HA  I + L    ++LTKLI+      
Sbjct: 80  PVTRNFDTQ--SHSPVHEALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLVC--- 134

Query: 68  TTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPS 127
           T  S+ +A  LF  +P PD  LF+++ +  S+    I  +  +  +L SG    +Y+F S
Sbjct: 135 TAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTS 194

Query: 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE 187
           ++KACA +   AL  GK++H   +  G  S++YV   LI LYA+ SD++ A+++F+ + +
Sbjct: 195 VIKACADL--SALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQ 252

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
             ++++N++I+ Y ++  P E++ LF  + E   +P   T++S LSSC+ LG+LD G W+
Sbjct: 253 RTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWL 312

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQG 307
           H+Y    G D  V + T+LI+M+ +CG +  A  VFD+M  ++   W+AMI  Y  HG G
Sbjct: 313 HDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYG 372

Query: 308 HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367
            +++ +F EM      P+ ITF+ +L AC+H+GL+D+G   F SM++ YG+VPG++H  C
Sbjct: 373 RQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVC 432

Query: 368 MVDLLGRAGRLDEAYRFIDE-LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
           MVD+ GRAG L++AY+FI + +P +  P +W ++L +C  H N  L  +V E +  ++  
Sbjct: 433 MVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPE 492

Query: 427 HGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSY 486
           + G YV+LSN+ A AGR + V+ +R +M  R + K  G S+IE+N     F  GD  H  
Sbjct: 493 NPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQ 552

Query: 487 STDLQKALDELVKELKMVGYVPD-TSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPP 545
           +  + + LDEL+      GYVP   SL+H  D+E+EE++ ALRYHSEKLA+ FGLL T  
Sbjct: 553 TNTIYRYLDELMCRCSESGYVPAPESLMH--DLEEEERDYALRYHSEKLALAFGLLKTNQ 610

Query: 546 GTTIRVVKNLRVC 558
           G TIR+VKNLR+C
Sbjct: 611 GETIRIVKNLRIC 623


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/537 (41%), Positives = 342/537 (63%), Gaps = 12/537 (2%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDR 81
           SLL  C   + +   KQ+HA   +  +  +  + TKL+N +C  N    S+ +AHLLFDR
Sbjct: 6   SLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICN----SLTNAHLLFDR 61

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           I + ++ L+N M RGY+ +     AI L+ ++ + GL+PD ++FP +LKAC+ +   A+E
Sbjct: 62  ISKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSAL--SAME 119

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           EGK++H   I+ GL S+++V   LI++YA+C  VE+AR++F+ I E  VV +N+++  Y+
Sbjct: 120 EGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYS 179

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++ +P+E+L+L R +    LKPT+ T + ++++ A  G L  GK +H Y  ++G +   K
Sbjct: 180 QNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDK 239

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V TAL+DM+AK G ++ A S+F+ +  K   +W+AMI  YA HG  ++++ +F+EM K +
Sbjct: 240 VKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEM-KGK 298

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           V PD ITF+G+L ACSH GL++EG  +F SM   + I P ++HY CM+DLLG  GRL+EA
Sbjct: 299 VLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEA 358

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
           Y+ I E+ ++    +W  LL SC  H N+ + +  +E++ EL+   GG+YVILSN+ A+A
Sbjct: 359 YKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQA 418

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           G+W+ V  LR LM ++G+ K   CS IEV N V  F S D  H  S  +   L    K +
Sbjct: 419 GKWDGVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLM 478

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K  GY P    V H D+ED+EK   +  HSE+LAI FGL++T  GT + ++KNLR+C
Sbjct: 479 KEAGYAPQVGSVFH-DVEDDEKVDMVSCHSERLAIAFGLISTSAGTKLLIIKNLRIC 534


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/530 (41%), Positives = 330/530 (62%), Gaps = 15/530 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           KQ H        Q+D+ V + LI       T   +E A  +FD IP+ DIV + +M RGY
Sbjct: 96  KQTHQQAFVFGYQSDIFVSSALI---VMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGY 152

Query: 98  SRSKTPIRAIFLFVELL------NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAI 151
             +   + A+ LF +LL      +  +  D     S++ AC+ V A+ L E   +H F I
Sbjct: 153 DLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTE--SIHSFVI 210

Query: 152 KLGLNSNLYVCTTLINLYAECSD--VEAARRIFENISEPCVVSYNAIITAYARSSRPNEA 209
           K G +  + V  TL++ YA+  +  V  AR+IF+ I +   VSYN+I++ YA+S   NEA
Sbjct: 211 KRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEA 270

Query: 210 LSLFREL-QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALID 268
             +FR L + + +    +T+ + L + +  G+L +GK IH+ + + GL+  V V T++ID
Sbjct: 271 FEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIID 330

Query: 269 MHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT 328
           M+ KCGR++ A   FD M  K+ ++W+AMI  Y  HG   K++ +F  M+ + V P+ IT
Sbjct: 331 MYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYIT 390

Query: 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388
           F+ +L ACSH GL  EGW +F +M+ ++G+ PG++HYGCMVDLLGRAG L +AY  I  +
Sbjct: 391 FVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRM 450

Query: 389 PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVD 448
            +K   I+W +LL++C  H N+ LA+  + R+FELD S+ G Y++LS++ A AGRW+DV+
Sbjct: 451 KMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVE 510

Query: 449 YLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVP 508
            +R +MK+RG++K PG S +E+N  V  F  GD  H     + + L EL ++L   GYV 
Sbjct: 511 RVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVS 570

Query: 509 DTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +TS V H D+++EEKE+ LR HSEKLAI FG++NT PG+T+ VVKNLRVC
Sbjct: 571 NTSSVCH-DVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVC 619



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 190/389 (48%), Gaps = 22/389 (5%)

Query: 53  LNVLTKLINFCTQNPTTSSMEHAH-----LLFDR-IPEPDIVLFNTMARGYSRSKTPIRA 106
           + V +K   FC+ +    +  H        LF+R + + D+  +N++    +RS     A
Sbjct: 1   MKVRSKKALFCSVSRLLHTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEA 60

Query: 107 IFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI 166
           +  F  +    L P   SFP  +KAC+ +    +  GKQ H  A   G  S+++V + LI
Sbjct: 61  LLAFSSMRKLSLYPTRSSFPCAIKACSSLFD--IFSGKQTHQQAFVFGYQSDIFVSSALI 118

Query: 167 NLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV 226
            +Y+ C  +E AR++F+ I +  +VS+ ++I  Y  +    +A+SLF++L        D 
Sbjct: 119 VMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDA 178

Query: 227 TML------SALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV 280
             L      S +S+C+ + +  L + IH ++ K G D+ V V   L+D +AK G    AV
Sbjct: 179 MFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAV 238

Query: 281 S--VFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDEITFLGLLYACS 337
           +  +FD +  KD  ++++++  YA  G  +++  +F  ++K + V+ + IT   +L A S
Sbjct: 239 ARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVS 298

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H+G +  G    +    + G+   +     ++D+  + GR++ A +  D +  K+    W
Sbjct: 299 HSGALRIG-KCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRS-W 356

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDS 426
             +++    H   G A + +E    + DS
Sbjct: 357 TAMIAGYGMH---GHAAKALELFPAMIDS 382


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/571 (38%), Positives = 337/571 (59%), Gaps = 33/571 (5%)

Query: 18  CTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQN----------- 66
           C   P  L    +  +FR  +QIH   +K     DL V T LI+   QN           
Sbjct: 103 CYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFD 162

Query: 67  -----------------PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFL 109
                             +   +  A  +FD IP  D+V +N M  GY+ +     A+ L
Sbjct: 163 QSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALEL 222

Query: 110 FVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLY 169
           F E++ + + PD+ +  S++ ACA   + ++E G+Q+H +    G  SNL +   LI+LY
Sbjct: 223 FKEMMKTNVRPDESTMVSVVSACA--QSASIELGRQVHSWIDDHGFGSNLKIVNALIDLY 280

Query: 170 AECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTML 229
            +C +VE A  +FE +S   V+S+N +I  Y   +   EAL LF+E+      P DVTML
Sbjct: 281 IKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTML 340

Query: 230 SALSSCALLGSLDLGKWIHEYIKKY--GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS 287
           S L +CA LG++++G+WIH YI K   G+       T+LIDM+AKCG ++ A  VFD++ 
Sbjct: 341 SILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSIL 400

Query: 288 GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN 347
            +   +W+AMI  +A HG+ + +  +F  M K ++ PD+ITF+GLL ACSH+G++D G +
Sbjct: 401 NRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRH 460

Query: 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
            F SM++ Y I P ++HYGCM+DLLG +G   EA   I+ + ++   ++W +LL +C  +
Sbjct: 461 IFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMY 520

Query: 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSS 467
            N+ L +   + + +++  + G YV+LSN+ A AGRW +V  +R L+ D+G+ KVPGCSS
Sbjct: 521 ANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSS 580

Query: 468 IEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIAL 527
           IE+++VV EF  GD  H  + ++   L+E+   L+  G+VPDTS V   +ME+E KE AL
Sbjct: 581 IEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQ-EMEEEWKEGAL 639

Query: 528 RYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           R+HSEKLAI FGL++T PGT + +VKNLRVC
Sbjct: 640 RHHSEKLAIAFGLISTKPGTKLTIVKNLRVC 670



 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 151/473 (31%), Positives = 264/473 (55%), Gaps = 43/473 (9%)

Query: 20  NTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLF 79
           N P +LSLL  C + + L+ IHA  IKT L N    L+KLI FC  +P    + +A  +F
Sbjct: 2   NHP-SLSLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVF 60

Query: 80  DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEA 139
           + I EP+++++NTM RG++ S  P+ A++L+V +++ GLLP+ Y+FP LLK+CA   ++A
Sbjct: 61  ETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCA--KSKA 118

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY------ 193
             EG+Q+H   +KLG + +LYV T+LI++Y +   +E AR++F+  S   VVSY      
Sbjct: 119 FREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITG 178

Query: 194 -------------------------NAIITAYARSSRPNEALSLFRELQERNLKPTDVTM 228
                                    NA+I+ YA +    EAL LF+E+ + N++P + TM
Sbjct: 179 YASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTM 238

Query: 229 LSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG 288
           +S +S+CA   S++LG+ +H +I  +G    +K+  ALID++ KCG ++ A  +F+ +S 
Sbjct: 239 VSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSY 298

Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WN 347
           KD  +W+ +I  Y       +++L+F+EM+++  SP+++T L +L AC+H G ++ G W 
Sbjct: 299 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWI 358

Query: 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
           + Y  +   G+     H   ++D+  + G ++ A +  D +  +S    W  ++   + H
Sbjct: 359 HVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSS-WNAMIFGFAMH 417

Query: 408 NNLGLAKQVIERI----FELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
                A  +  R+     E DD     +V L + C+ +G  +   ++ + MK+
Sbjct: 418 GRANAAFDIFSRMRKNEIEPDDI---TFVGLLSACSHSGMLDLGRHIFRSMKE 467


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/480 (44%), Positives = 304/480 (63%), Gaps = 9/480 (1%)

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +P PD    NT+ R ++ S  P  A+ L    L     PD +++P LL+ACA +   AL 
Sbjct: 85  LPSPDPFSLNTVLRIFASSARPRVALALHRRHLAP---PDTHTYPPLLQACARL--LALR 139

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP--CVVSYNAIITA 199
            G+ LH  A K GL S ++V  +L++LY  C   E+A R+F+ I  P   +VS+N+++  
Sbjct: 140 YGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNG 199

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
           +A + RPNE L++FRE+ E    P   T++S L++CA +G L LG+ +H ++ K GL   
Sbjct: 200 FAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGN 259

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
                ALID++AKCG +DDA  +F  M  G+   +W+++IV  A +G G  ++ +F  M 
Sbjct: 260 AHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMME 319

Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
           + ++ P EIT +G+LYACSH GLVD+G+ YF  M+ +YGI P I+H GCMVDLLGRAGR+
Sbjct: 320 REKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRV 379

Query: 379 DEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438
           +EA+ +I  +P++   ++WRTLL +C+ H  L + +    R+ ELD  H GDYV+LSNL 
Sbjct: 380 EEAHNYITTMPLEPNAVVWRTLLGACAMHKKLEIGEAAWARLVELDPGHSGDYVLLSNLY 439

Query: 439 ARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELV 498
           A  GRW DV  LRK M   GV K PG S +E+ N V EF  GD  H  +  + + L ++ 
Sbjct: 440 AGVGRWADVHVLRKTMVTHGVRKNPGHSLVELRNSVYEFVMGDRSHPETDQIYEMLGDIA 499

Query: 499 KELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           + L+  GY+P TS V   D+EDEEKE AL YHSE+LAI F LL + PGT IR+VKNLRVC
Sbjct: 500 ERLRRQGYIPHTSNV-LADIEDEEKESALNYHSERLAIAFALLKSLPGTPIRIVKNLRVC 558



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 154/304 (50%), Gaps = 18/304 (5%)

Query: 6   SPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQ 65
           +PP T + PP         L    R  + R  + +HA   K  L + + V   L++    
Sbjct: 118 APPDTHTYPP--------LLQACARLLALRYGEGLHAEACKNGLVSLVFVKNSLVHLYG- 168

Query: 66  NPTTSSMEHAHLLFDRIPEPD--IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDY 123
                  E AH +FD IP P+  +V +N++  G++ +  P   + +F E+L     PD +
Sbjct: 169 --ACGLFESAHRVFDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGF 226

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           +  S+L ACA +G  AL  G+++H F  K+GL  N +    LI+LYA+C  V+ AR++F 
Sbjct: 227 TVVSVLTACAEIGVLAL--GRRVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFG 284

Query: 184 NIS-EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242
            +     VVS+ ++I   A +    +AL LF  ++   L PT++TM+  L +C+  G +D
Sbjct: 285 EMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVD 344

Query: 243 LG-KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVA 300
            G ++  +   +YG+   ++    ++D+  + GR+++A +    M  + +   W  ++ A
Sbjct: 345 DGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGA 404

Query: 301 YATH 304
            A H
Sbjct: 405 CAMH 408


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/556 (40%), Positives = 326/556 (58%), Gaps = 40/556 (7%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP--EPDIVLFNTMAR 95
           K +H + IKT   +D+ VL  LI+F     +   ++ A+L+F+ I     DIV +N+M  
Sbjct: 260 KAVHGMAIKTSFGDDVFVLNSLIHFYA---SCGHLDLAYLVFEMIEGNNKDIVSWNSMVT 316

Query: 96  GYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155
           G+ +   P +A+ LF  + N G+ P+  +  S++ ACA      L  G+++  +  +  +
Sbjct: 317 GFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACA--KTMNLTLGRKVCDYIDRNEM 374

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR------------- 202
             NL VC   I+++ +C +VE AR +F+N+ +  VVS+  II  YA+             
Sbjct: 375 MMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDS 434

Query: 203 ------------------SSRPNEALSLFRELQ--ERNLKPTDVTMLSALSSCALLGSLD 242
                             S RP EAL++FRELQ  +   +P  VT+LS LS+CA LG++D
Sbjct: 435 MPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMD 494

Query: 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYA 302
           +G+WIH YIKK  +     + T+LIDM++K G ++ A+ VF ++  KD   WSAMI   A
Sbjct: 495 IGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLA 554

Query: 303 THGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI 362
            HG+G  +I +F +M + QV P+ +TF  LL ACSH+GLVDEG   F  M   YG+VP  
Sbjct: 555 MHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKT 614

Query: 363 KHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
           KHY CMVD+LGRAG L+EA +FI+ +P+  +  +W  LL +C  H NL LA++   R+ E
Sbjct: 615 KHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLE 674

Query: 423 LDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDG 482
           ++  + G YV+LSNL A+ G WE V  LR+ M+D G+ K  GCSSIE++  V EF  GD 
Sbjct: 675 IEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEFIVGDN 734

Query: 483 VHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLN 542
            H  S D+   LDE++  L+  GYV +T  +     E+E KE AL+ HSEK+AI FGL+ 
Sbjct: 735 AHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALKLHSEKMAIAFGLIR 794

Query: 543 TPPGTTIRVVKNLRVC 558
                 IR+VKNLRVC
Sbjct: 795 ADSQQAIRIVKNLRVC 810



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 128/473 (27%), Positives = 238/473 (50%), Gaps = 51/473 (10%)

Query: 12  SPPPKLCTNTP-NALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTS 70
           SP P   T T     +L  +CTSF+ LKQIHA  ++T+  +D    ++L        + S
Sbjct: 129 SPTPASATATNVGDRALFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFT-AAAFSSFS 187

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL-NSGLLPDDYSFPSLL 129
           ++++A  +FD+IP+P++  +N + R  + S  PI+++ +F+ +L +S   P+ ++FP L+
Sbjct: 188 ALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLI 247

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI--SE 187
           KA A         GK +H  AIK     +++V  +LI+ YA C  ++ A  +FE I  + 
Sbjct: 248 KAVA--ERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNN 305

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
             +VS+N+++T + +   P++AL LF  ++   + P  VTM+S +S+CA   +L LG+ +
Sbjct: 306 KDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKV 365

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG------------------- 288
            +YI +  +   + V  A IDM  KCG ++ A  +FDNM                     
Sbjct: 366 CDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEH 425

Query: 289 ------------KDTQAWSAMIVAYATHGQGHKSILMFEEMM--KAQVSPDEITFLGLLY 334
                       KD  AW+ +I  Y   G+  +++ +F E+   K+   PD++T L  L 
Sbjct: 426 GIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLS 485

Query: 335 ACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
           AC+  G +D G W + Y  +++  +   +     ++D+  ++G +++A      +  K  
Sbjct: 486 ACAQLGAMDIGEWIHGYIKKERIQLNRNLA--TSLIDMYSKSGDVEKAIEVFHSIGNKDV 543

Query: 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH-GGDYVILSNL---CARAG 442
             +W  +++  + H   G  +  IE   ++ ++    + V  +NL   C+ +G
Sbjct: 544 -FVWSAMIAGLAMH---GRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSG 592



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 92/224 (41%), Gaps = 41/224 (18%)

Query: 25  LSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           LS L  C     +   + IH    K  +Q + N+ T LI+  ++   +  +E A  +F  
Sbjct: 481 LSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSK---SGDVEKAIEVFHS 537

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           I   D+ +++ M  G +       AI LF+++  + + P+  +F +LL  CAC  +  ++
Sbjct: 538 IGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLL--CACSHSGLVD 595

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           EGK+L                             +   R++  +  P    Y+ ++    
Sbjct: 596 EGKRL----------------------------FDEMERVYGVV--PKTKHYSCMVDVLG 625

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245
           R+    EAL     +    L P+     + L +C + G+L+L +
Sbjct: 626 RAGHLEEALKFIEGMP---LAPSASVWGALLGACCIHGNLELAE 666


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/544 (39%), Positives = 335/544 (61%), Gaps = 13/544 (2%)

Query: 21  TPNALS---LLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEH 74
           +P+  S   +L  C++   L   +++H    +   ++D+ V   L+    +      +  
Sbjct: 170 SPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAK---CGEIVR 226

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A+ +F R+ +  IV + ++  GY+++  PI A+ +F E+  + + PD  +  S+L+A   
Sbjct: 227 ANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTD 286

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           V  E LE GK +H   IK+GL     +  +L +LYA+C  V  AR  F  +  P ++ +N
Sbjct: 287 V--EDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWN 344

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           A+I+ Y ++    EA+ LFR ++ +N++P  +T+ S++++CA +GSL+L +W+ EYI   
Sbjct: 345 AMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMS 404

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
                V VNT+LID +AKCG +D A  VFD +  KD   WSAM+V Y  HGQG +SI++F
Sbjct: 405 EFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILF 464

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
             M +A VSP+++TF+GLL AC ++GLV+EGW+ F+ MRD YGI P  +HY C+VDLLGR
Sbjct: 465 HAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRD-YGIEPRHQHYACVVDLLGR 523

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
           AG LD AY F+  +PI+    +W  LLS+C  H ++ L +   ER+F LD  + G YV L
Sbjct: 524 AGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQL 583

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
           SNL A +  W+ V  +R LM+++G+ K  G S IE+N  ++ F +GD  H  S ++ + +
Sbjct: 584 SNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEV 643

Query: 495 DELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
           ++L + LK  G+VP T  V H D+  EE E  L  HSE+LAI +GL++TPPGTT+R+ KN
Sbjct: 644 EDLERRLKEAGFVPHTESVLH-DLNYEETEETLCNHSERLAIAYGLISTPPGTTLRITKN 702

Query: 555 LRVC 558
           LR C
Sbjct: 703 LRAC 706



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 119/430 (27%), Positives = 217/430 (50%), Gaps = 20/430 (4%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           L QI+A  + T LQ    ++ KL+N   +      +  A  LFD+ P+PD+ L+N + R 
Sbjct: 91  LNQIYAKLLVTGLQYGGFLIAKLVN---KASNIGEVSCARKLFDKFPDPDVFLWNAIVRC 147

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           YSR      AI ++  +  + + PD +SFP +LKAC+ +   ALE G+++H    + G  
Sbjct: 148 YSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSAL--PALEMGRRVHGQIFRHGFE 205

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
           S+++V   L+ LYA+C ++  A  +F  + +  +VS+ +II+ YA++ +P EAL +F E+
Sbjct: 206 SDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEM 265

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           ++ N++P  + ++S L +   +  L+ GK IH  + K GL+    +  +L  ++AKCG +
Sbjct: 266 RKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHV 325

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
             A   F+ +       W+AMI  Y  +G   ++I +F  M    + PD IT    + AC
Sbjct: 326 MVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAAC 385

Query: 337 SHTGLVDEG-W-NYFYSMRD-KYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
           +  G ++   W + + SM + +  ++        ++D   + G +D A    D +P K  
Sbjct: 386 AQIGSLELARWMDEYISMSEFRNDVIVNTS----LIDTYAKCGSVDMARFVFDRIPDKDV 441

Query: 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELDDS----HGGDYVILSNLCARAGRWEDVDY 449
            ++W  ++     H   G  ++ I     +  +    +   +V L   C  +G  E+   
Sbjct: 442 -VVWSAMMVGYGLH---GQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWD 497

Query: 450 LRKLMKDRGV 459
           L   M+D G+
Sbjct: 498 LFHRMRDYGI 507


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/536 (40%), Positives = 329/536 (61%), Gaps = 10/536 (1%)

Query: 26  SLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           +LL RCT    LK+   +H   + ++ ++DL +   L+    +     S+E A  LFD +
Sbjct: 79  TLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYAR---CGSLEGARRLFDEM 135

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           P  D+V + +M  GY+++     A+ LF  +L+ G  P++++  SL+K C  + +     
Sbjct: 136 PHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNC-- 193

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G+Q+H    K G +SN++V ++L+++YA C  +  A  +F+ +     VS+NA+I  YAR
Sbjct: 194 GRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYAR 253

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
                EAL+LF  +Q    +PT+ T  + LSSC+ +G L+ GKW+H ++ K        V
Sbjct: 254 KGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYV 313

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
              L+ M+AK G + DA  VFD +   D  + ++M++ YA HG G ++   F+EM++  +
Sbjct: 314 GNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGI 373

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            P++ITFL +L ACSH  L+DEG +YF  MR KY I P + HY  +VDLLGRAG LD+A 
Sbjct: 374 EPNDITFLSVLTACSHARLLDEGKHYFGLMR-KYNIEPKVSHYATIVDLLGRAGLLDQAK 432

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
            FI+E+PI+ T  +W  LL +   H N  +     +R+FELD S+ G + +L+N+ A AG
Sbjct: 433 SFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASAG 492

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           RWEDV  +RK+MKD GV K P CS +EV N V  F + D  H     + K  ++L +++K
Sbjct: 493 RWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKLNQKIK 552

Query: 503 MVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +GYVPDTS V    ++ +EKE+ L+YHSEKLA++F LLNTPPG+TIR++KN+RVC
Sbjct: 553 EIGYVPDTSHVLLF-VDQQEKELNLQYHSEKLALSFALLNTPPGSTIRIMKNIRVC 607



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 114/244 (46%), Gaps = 7/244 (2%)

Query: 161 VCTTLINLYAECS-DVEAARRIFENI-SEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
           V  +L+ + + C  D+ + RR++++  S  CV+    ++     S      L L   +  
Sbjct: 11  VLKSLLQIVSPCKRDLGSFRRLWQHSESTFCVIDDRNLLRPSLNSKTGLHVLDL---IDC 67

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
            +L+P      + L  C  LG L  GK +H ++        + +  +L+ M+A+CG L+ 
Sbjct: 68  GSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEG 127

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A  +FD M  +D  +W++MI  YA + +   ++L+F  M+     P+E T   L+  C +
Sbjct: 128 ARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGY 187

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
               + G    ++   KYG    +     +VD+  R G L EA    D+L  K+  + W 
Sbjct: 188 MASYNCG-RQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKN-EVSWN 245

Query: 399 TLLS 402
            L++
Sbjct: 246 ALIA 249


>gi|242047426|ref|XP_002461459.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
 gi|241924836|gb|EER97980.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
          Length = 568

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/529 (41%), Positives = 328/529 (62%), Gaps = 10/529 (1%)

Query: 33  SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI-PEPDIVLFN 91
           S   +KQ+HA  ++  +     +L K + F   +     + +A  +  R+ P+PD    N
Sbjct: 31  SLATVKQLHARALRAGVPPAHPLLAKHLLFHLASLRAPPLRYAVAVLTRVLPDPDPFSLN 90

Query: 92  TMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAI 151
           T+ R  + S  P  A+ L    L     PD +++P LL+ACA +   +L  G+++H  A 
Sbjct: 91  TVLRIAASSSRPSLALALHARRLAP---PDTHTYPPLLQACARL--LSLRHGERIHAEAA 145

Query: 152 KLGLNSNLYVCTTLINLYAECSDVEAARRIFENI--SEPCVVSYNAIITAYARSSRPNEA 209
           K GL + ++V  +L++LY  C   E+A R+F+ I   E  +VS+N+++  +A + RPNE 
Sbjct: 146 KNGLATLVFVKNSLVHLYGACGLFESAHRVFDEIPVGERNLVSWNSMLNGFAANGRPNEV 205

Query: 210 LSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDM 269
           L++FRE+ + N  P   T++S L++ A +G+L LG+ +H Y+ K GL +   V  ALID+
Sbjct: 206 LTIFREMLDVNFMPDGFTVVSVLTASAEIGALALGRRVHVYLTKVGLVENSHVGNALIDL 265

Query: 270 HAKCGRLDDAVSVFDNMSGKDTQ-AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT 328
           +AKCG ++DA  VF+ M  + T  +W+++IV  A +G G +++ +F  M + ++ P EIT
Sbjct: 266 YAKCGGVEDARRVFEEMGARRTVVSWTSLIVGLAVNGFGKEALELFGIMEREKLVPTEIT 325

Query: 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388
            +G+LYACSH GLVD+G+ YF  M+++Y I P I+H GCMVDLLGRAG++ EAY +I  +
Sbjct: 326 MVGVLYACSHCGLVDDGFMYFNRMKEEYNIAPRIEHLGCMVDLLGRAGKVKEAYDYILTM 385

Query: 389 PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVD 448
           P++   ++WRTLL +C+ H  L L +    R+ ELD  H GDYV+LSNL A  GRW DV 
Sbjct: 386 PLEPNAVVWRTLLGACAMHKKLELGEAAWARLVELDPGHSGDYVLLSNLYAAVGRWADVH 445

Query: 449 YLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVP 508
            LRK M   GV K PG S +E+ N V EF  GD  H  S  + + L E+   L+  GY+P
Sbjct: 446 VLRKTMVKDGVRKNPGRSLVELRNSVYEFVMGDRSHPESEQIYQMLAEVADSLRREGYIP 505

Query: 509 DTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRV 557
            TS V   D+E+EEKE AL YHSE+LAI F LL + PGT IR+VKNLR+
Sbjct: 506 RTSNV-LADIEEEEKETALNYHSERLAIAFALLKSLPGTPIRIVKNLRL 553


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/572 (39%), Positives = 338/572 (59%), Gaps = 39/572 (6%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQN--------------- 66
           P  L    +  +F+  +QIH   +K     DL V T LI+   QN               
Sbjct: 79  PFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSH 138

Query: 67  -------------PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVEL 113
                         +   +E A  +FD IP  D+V +N M  GY+ +    +A+ LF E+
Sbjct: 139 RDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEM 198

Query: 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
           + + + PD+ +  +++ ACA  G+  +E G+Q+H +    G  SNL +   LI+LY++C 
Sbjct: 199 MKTNVKPDESTMATVVSACAQSGS--IELGRQVHSWINDHGFGSNLKIVNALIDLYSKCG 256

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
           +VE A  + E +S   V+S+N +I  Y   +   EAL LF+E+      P DVTMLS L 
Sbjct: 257 EVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 316

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVN-----TALIDMHAKCGRLDDAVSVFDNMS- 287
           +CA LG++D+G+WIH YI K  L   V  N     T+LIDM+AKCG +D A  V D+ + 
Sbjct: 317 ACAHLGAIDIGRWIHVYIDK-KLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAF 375

Query: 288 GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN 347
            +    W+AMI  +A HG+ + +  +F  M K  + PD+ITF+GLL ACSH+G++D G N
Sbjct: 376 NRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRN 435

Query: 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
            F SMR  Y I P ++HYGCM+DLLG +G   EA   I+ +P++   ++W +LL +C  H
Sbjct: 436 IFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIH 495

Query: 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV-LKVPGCS 466
            NL L +   +++ +++  + G YV+LSN+ A AG+W +V  +R L+ D+G+  KVPGCS
Sbjct: 496 GNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCS 555

Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
           SIE+++VV EF  GD +H  + ++   L+E+   L+  G+VPDTS V   +ME+E KE A
Sbjct: 556 SIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQ-EMEEEWKEGA 614

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           LR+HSEKLAI FGL++T PGT + +VKNLRVC
Sbjct: 615 LRHHSEKLAIAFGLISTKPGTKLTIVKNLRVC 646



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 127/424 (29%), Positives = 233/424 (54%), Gaps = 43/424 (10%)

Query: 57  TKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS 116
           ++L+ FC  +P    + +A  +F+ IPEP+ +++N M RG++ S  P+ A+ L+V +++ 
Sbjct: 10  SQLLEFCILSPHFDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISL 69

Query: 117 GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVE 176
           GLLP+ ++FP LLK+CA   ++  +EG+Q+H   +KLG + +LYV T+LI++YA+   +E
Sbjct: 70  GLLPNFFTFPFLLKSCA--KSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLE 127

Query: 177 AARRIFENISEPCVVSY-------------------------------NAIITAYARSSR 205
            A+++F+  S   VVSY                               NA+I+ YA +  
Sbjct: 128 DAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGN 187

Query: 206 PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTA 265
             +AL LF+E+ + N+KP + TM + +S+CA  GS++LG+ +H +I  +G    +K+  A
Sbjct: 188 YKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNA 247

Query: 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
           LID+++KCG ++ A  + + +S KD  +W+ +I  Y       +++L+F+EM+++  +P+
Sbjct: 248 LIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 307

Query: 326 EITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIV--PGIKHYGCMVDLLGRAGRLDEAY 382
           ++T L +L AC+H G +D G W + Y  +   G+V          ++D+  + G +D A 
Sbjct: 308 DVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAP 367

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI----FELDDSHGGDYVILSNLC 438
           +  D      +   W  ++   + H     A  +  R+     E DD     +V L + C
Sbjct: 368 QVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDI---TFVGLLSAC 424

Query: 439 ARAG 442
           + +G
Sbjct: 425 SHSG 428


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/480 (44%), Positives = 306/480 (63%), Gaps = 9/480 (1%)

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +P+PD    NT+ R  + S  P  A+ L    L     PD +++P LL+AC  +   AL 
Sbjct: 83  LPDPDPFSLNTVLRIAASSAHPRIALALHRRRLAP---PDTHTYPPLLQACTRL--LALR 137

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS--EPCVVSYNAIITA 199
           EG+ LH  A K GL + ++V  +L++ Y  C   E+A R+F+ I   E  +VS+N+++  
Sbjct: 138 EGESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNG 197

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
           +A + RPNE L++FRE  E +L P   T++S L++CA +G+L LG+ +H +  K GL   
Sbjct: 198 FAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGN 257

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
             V  ALID++AKCG ++DA  VF+ M   +   +W+++IV  A +G G  ++ +F  M 
Sbjct: 258 SHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDALELFGLME 317

Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
           + ++ P +IT +G+LYACSH GLVD+G+ YF  M+DKYGI PGI+H GCMVDLLGRAGR+
Sbjct: 318 RERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRV 377

Query: 379 DEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438
           +EA+ +I  +P++   ++WRTLL +C+ H  L L +    R+ ELD  H GDYV+LSNL 
Sbjct: 378 EEAHNYITTMPVEPNAVVWRTLLGACAMHKKLELGEAAWARLVELDPGHSGDYVLLSNLY 437

Query: 439 ARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELV 498
           A  GRW D   LRK M   GV K PG S +E+ N V EF  GD  H  S  + + L E+ 
Sbjct: 438 AAVGRWADAHVLRKTMATHGVRKNPGHSLVELRNSVYEFVMGDRSHPESDQIYQTLAEIA 497

Query: 499 KELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           + L+  GYVP TS V   D+E+EEKE AL YHSE+LAI F LL + PG+ IR+VKNLR+C
Sbjct: 498 ERLRCQGYVPRTSNV-LADIEEEEKETALNYHSERLAIAFALLKSLPGSPIRIVKNLRMC 556


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/553 (38%), Positives = 339/553 (61%), Gaps = 11/553 (1%)

Query: 8   PITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNP 67
           P+T++   +  +++P   +LL      R L+Q+HA  I + L    ++LTKLI+      
Sbjct: 16  PVTRNFDTQ--SHSPVHEALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLVC--- 70

Query: 68  TTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPS 127
           T  S+ +A  LF  +P PD  LF+++ +  S+    I  +  +  +L SG    +Y+F S
Sbjct: 71  TAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTS 130

Query: 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE 187
           ++KACA +   AL  GK++H   +  G  S++YV   LI LYA+ SD++ A+++F+ + +
Sbjct: 131 VIKACADL--SALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQ 188

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
             ++++N++I+ Y ++  P E++ LF  + E   +P   T++S LSSC+ LG+LD G W+
Sbjct: 189 RTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWL 248

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQG 307
           H+Y    G D  V + T+LI+M+ +CG +  A  VFD+M  ++   W+AMI  Y  HG G
Sbjct: 249 HDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYG 308

Query: 308 HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367
            +++ +F EM      P+ ITF+ +L AC+H+GL+D+G   F SM++ YG+VPG++H  C
Sbjct: 309 RQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVC 368

Query: 368 MVDLLGRAGRLDEAYRFIDE-LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
           MVD+ GRAG L++AY+FI + +P +  P +W ++L +C  H N  L  +V E +  ++  
Sbjct: 369 MVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPE 428

Query: 427 HGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSY 486
           + G YV+LSN+ A AGR + V+ +R +M  R + K  G S+IE+N     F  GD  H  
Sbjct: 429 NPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQ 488

Query: 487 STDLQKALDELVKELKMVGYVPD-TSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPP 545
           +  + + LDEL+      GYVP   SL+H  D+E+EE++ ALRYHSEKLA+ FGLL T  
Sbjct: 489 TNTIYRYLDELMCRCSESGYVPAPESLMH--DLEEEERDYALRYHSEKLALAFGLLKTNQ 546

Query: 546 GTTIRVVKNLRVC 558
           G TIR+VKNLR+C
Sbjct: 547 GETIRIVKNLRIC 559


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/551 (40%), Positives = 325/551 (58%), Gaps = 33/551 (5%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQN----------------------------PTT 69
           KQIHA  +K  L  DL+V T LI+   QN                             + 
Sbjct: 98  KQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASR 157

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
            +M+ A  +FD IP  D+V +N M  GY+       A+ LF E++   + PD+ +  ++L
Sbjct: 158 GNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVL 217

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC 189
             C   G   +E G+Q+H +    G  SNL +   LI+LY++C ++E A  +FE +    
Sbjct: 218 STCTHSGN--VELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKD 275

Query: 190 VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           V+S+N +I  YA  +   EAL +F+E+ +    P DVTMLS L +CA LG++D+G+WIH 
Sbjct: 276 VISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHV 335

Query: 250 YIKKY--GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQG 307
           YI K   G+     + T+LIDM+AKCG ++ A  VFD +  K   + +AMI  +A HG+ 
Sbjct: 336 YIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRA 395

Query: 308 HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367
             +  +   M K  + PD+ITF+GLL ACSH GL D G   F SM   Y I P ++HYGC
Sbjct: 396 DAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGC 455

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
           M+DLLGR+G   EA   I+ + ++   ++W +LL +C  H NL L + + +++ +++  +
Sbjct: 456 MIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKN 515

Query: 428 GGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYS 487
            G YV+LSN+ A + RW+DV  +R L+ D+G+ KVPGCSSIE++++V EF  GD  H  +
Sbjct: 516 PGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFHPQN 575

Query: 488 TDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGT 547
            ++ K L+E+   L   G+V DTS V   +ME+E KE AL YHSEKLAI FGL++T PGT
Sbjct: 576 KEIYKMLEEIDSLLAETGFVSDTSEVLQ-EMEEELKEGALSYHSEKLAIAFGLISTKPGT 634

Query: 548 TIRVVKNLRVC 558
            +R+VKNLRVC
Sbjct: 635 KLRIVKNLRVC 645



 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 147/454 (32%), Positives = 241/454 (53%), Gaps = 59/454 (12%)

Query: 45  IKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPI 104
           IK  L N    L+KL++FC   P    + +A  +F  I EP+ + +NTM RG++ S  PI
Sbjct: 1   IKIGLHNTNYALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPI 60

Query: 105 RAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTT 164
            A+ L+V +++ GL P+ Y+FP L K+CA   ++A +EGKQ+H   +K GL  +L+V T+
Sbjct: 61  SALNLYVYMISLGLSPNSYTFPFLFKSCA--KSKAAQEGKQIHAQILKYGLTVDLHVHTS 118

Query: 165 LINLYAECSDVEAARRIFENISEPCVVSY------------------------------- 193
           LI++YA+   VE A ++F+  S   VVSY                               
Sbjct: 119 LISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSW 178

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           NA+I+ YA   R  EAL LF E+ + ++KP + TM + LS+C   G+++LG+ IH +I  
Sbjct: 179 NAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDN 238

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
           +G    +K+  ALID+++KCG ++ A  +F+ +  KD  +W+ +I  YA      +++L+
Sbjct: 239 HGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLV 298

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           F+EM+K   +P+++T L +L AC+H G +D G W + Y  +   GI+        ++D+ 
Sbjct: 299 FQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMY 358

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS-------HNNLGLAKQVIERI----F 421
            + G ++ A +  D +  KS        LSSC++       H     A  ++ R+     
Sbjct: 359 AKCGNIEAANQVFDTILNKS--------LSSCNAMIFGFAMHGRADAAFDLLSRMKKDGI 410

Query: 422 ELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455
           E DD     +V L + C+ AG     D  RK+ K
Sbjct: 411 EPDDI---TFVGLLSACSHAGL---SDLGRKIFK 438


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/532 (40%), Positives = 341/532 (64%), Gaps = 18/532 (3%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH-LLF---DRIPEP--DIVLFNT 92
           QIH++ +K  L ++  VLTK   F   +   +++ +A  +LF      P P  D  LFNT
Sbjct: 140 QIHSLILKLGLHHNPLVLTK---FAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNT 196

Query: 93  MARGYSRS-KTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAI 151
           + R ++++  +   A+  +  +    + P+ ++FP +LKACA  G   LE G  +H   +
Sbjct: 197 LIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACA--GMMRLELGGAVHASMV 254

Query: 152 KLGLNSNLYVCTTLINLYAEC-----SDVEAARRIFENISEPCVVSYNAIITAYARSSRP 206
           K G   + +V  TL+++Y  C     S   +A+++F+       V+++A+I  YAR+   
Sbjct: 255 KFGFEEDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDESPVKDSVTWSAMIGGYARAGNS 314

Query: 207 NEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
             A++LFRE+Q   + P ++TM+S LS+CA LG+L+LGKW+  YI++  + + V++  AL
Sbjct: 315 ARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIMRSVELCNAL 374

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           IDM AKCG +D AV VF  M  +   +W++MIV  A HG+G +++L+F+EMM+  V PD+
Sbjct: 375 IDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDD 434

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
           + F+G+L ACSH+GLVD+G  YF +M + + IVP I+HYGCMVD+L RAGR++EA  F+ 
Sbjct: 435 VAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVR 494

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWED 446
            +P++   ++WR+++++C +   L L + V + +   + SH  +YV+LSN+ A+  RWE 
Sbjct: 495 AMPVEPNQVIWRSIVTACHARGELKLGESVAKELIRREPSHESNYVLLSNIYAKLLRWEK 554

Query: 447 VDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGY 506
              +R++M  +G+ K+PG + IE+NN + EF +GD  H    ++ + ++E+ +E+K  GY
Sbjct: 555 KTKVREMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSHDQYKEIYEMVEEMGREIKRAGY 614

Query: 507 VPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           VP TS V   D+++E+KE AL  HSEKLAI F LL+TPPGT IR+VKNLRVC
Sbjct: 615 VPTTSQVLL-DIDEEDKEDALYRHSEKLAIAFALLSTPPGTPIRIVKNLRVC 665


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/567 (38%), Positives = 333/567 (58%), Gaps = 33/567 (5%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQN--------------- 66
           P  L    +  +FR  +QIH   +K     DL V T LI    +N               
Sbjct: 107 PFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSH 166

Query: 67  -------------PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVEL 113
                         +   +  A  +FD IP  D+V +N +  GY+ +     A+ LF E+
Sbjct: 167 RDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEM 226

Query: 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
           + + + PD+ +  ++L ACA   + ++E G+Q+H +    G  SNL +   LI+LY +C 
Sbjct: 227 MKTNVKPDESTMVTVLSACA--QSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCG 284

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
           +VE A  +FE +S   V+S+N +I  Y   +   EAL LF+E+      P +VTMLS L 
Sbjct: 285 EVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILP 344

Query: 234 SCALLGSLDLGKWIHEYIKKY--GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDT 291
           +CA LG++D+G+WIH YI K   G+     + T+LIDM+AKCG ++ A  VFD+M  +  
Sbjct: 345 ACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSL 404

Query: 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYS 351
            +W+AMI  +A HG+ + +  +F  M K  + PD+ITF+GLL ACSH+G++D G + F S
Sbjct: 405 SSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRS 464

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
           M + Y I P ++HYGCM+DLLG +G   EA   I+ + +    ++W +LL +C  H N+ 
Sbjct: 465 MTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVE 524

Query: 412 LAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVN 471
           L +   + + +++  + G YV+LSN+ A AGRW +V   R L+ D+G+ KVPGCSSIE++
Sbjct: 525 LGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEID 584

Query: 472 NVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHS 531
           +VV EF  GD +H  + ++   L+E+   L+  G+VPDTS V   +ME+E KE ALR+HS
Sbjct: 585 SVVHEFIIGDKLHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQ-EMEEEWKEGALRHHS 643

Query: 532 EKLAITFGLLNTPPGTTIRVVKNLRVC 558
           EKLAI FGL++T PGT + +VKNLRVC
Sbjct: 644 EKLAIAFGLISTKPGTKLTIVKNLRVC 670



 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 151/459 (32%), Positives = 253/459 (55%), Gaps = 43/459 (9%)

Query: 20  NTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLF 79
           N P +LSLL  C + + L+ IHA  IKT L N    L+KLI F   +P    + +A  +F
Sbjct: 2   NHP-SLSLLHNCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVF 60

Query: 80  DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEA 139
           D I EP+++++NTM RG++ S  P+ A++L+V +++ GL+P+ Y+FP LLKACA   ++A
Sbjct: 61  DSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACA--KSKA 118

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY------ 193
             EG+Q+H   +KLG + +LYV T+LI +Y +    E AR++F+  S   VVSY      
Sbjct: 119 FREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKG 178

Query: 194 -------------------------NAIITAYARSSRPNEALSLFRELQERNLKPTDVTM 228
                                    NA+I+ YA +    EAL LF+E+ + N+KP + TM
Sbjct: 179 YASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTM 238

Query: 229 LSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG 288
           ++ LS+CA   S++LG+ +H +I  +G    +K+  ALID++ KCG ++ A  +F+ +S 
Sbjct: 239 VTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSY 298

Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WN 347
           KD  +W+ +I  Y       +++L+F+EM+++  SP+E+T L +L AC+H G +D G W 
Sbjct: 299 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWI 358

Query: 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
           + Y  +   G+         ++D+  + G ++ A +  D +  +S    W  ++   + H
Sbjct: 359 HVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSS-WNAMIFGFAMH 417

Query: 408 NNLGLAKQVIERI----FELDDSHGGDYVILSNLCARAG 442
                A  +  R+     E DD     +V L + C+ +G
Sbjct: 418 GRANPAFDIFSRMRKDGIEPDDI---TFVGLLSACSHSG 453


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/530 (41%), Positives = 330/530 (62%), Gaps = 15/530 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           KQ H        Q+D+ V + LI       T   +E A  +FD IP+ +IV + +M RGY
Sbjct: 96  KQTHQQAFVFGYQSDIFVSSALI---VMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGY 152

Query: 98  SRSKTPIRAIFLFVELL------NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAI 151
             +   + A+ LF +LL      +  +  D     S++ AC+ V A+ L E   +H F I
Sbjct: 153 DLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTE--SIHSFVI 210

Query: 152 KLGLNSNLYVCTTLINLYAECSD--VEAARRIFENISEPCVVSYNAIITAYARSSRPNEA 209
           K G +  + V  TL++ YA+  +  V  AR+IF+ I +   VSYN+I++ YA+S   NEA
Sbjct: 211 KRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEA 270

Query: 210 LSLFREL-QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALID 268
             +FR L + + +    +T+ + L + +  G+L +GK IH+ + + GL+  V V T++ID
Sbjct: 271 FEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIID 330

Query: 269 MHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT 328
           M+ KCGR++ A   FD M  K+ ++W+AMI  Y  HG   K++ +F  M+ + V P+ IT
Sbjct: 331 MYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYIT 390

Query: 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388
           F+ +L ACSH GL  EGW +F +M+ ++G+ PG++HYGCMVDLLGRAG L +AY  I  +
Sbjct: 391 FVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRM 450

Query: 389 PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVD 448
            +K   I+W +LL++C  H N+ LA+  + R+FELD S+ G Y++LS++ A AGRW+DV+
Sbjct: 451 KMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVE 510

Query: 449 YLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVP 508
            +R +MK+RG++K PG S +E+N  V  F  GD  H     + + L EL ++L   GYV 
Sbjct: 511 RVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVS 570

Query: 509 DTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +TS V H D+++EEKE+ LR HSEKLAI FG++NT PG+T+ VVKNLRVC
Sbjct: 571 NTSSVCH-DVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVC 619



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 190/389 (48%), Gaps = 22/389 (5%)

Query: 53  LNVLTKLINFCTQNPTTSSMEHAH-----LLFDR-IPEPDIVLFNTMARGYSRSKTPIRA 106
           + V +K   FC+ +    +  H        LF+R + + D+  +N++    +RS     A
Sbjct: 1   MKVRSKKALFCSVSRLLHTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEA 60

Query: 107 IFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI 166
           +  F  +    L P   SFP  +KAC+ +    +  GKQ H  A   G  S+++V + LI
Sbjct: 61  LLAFSSMRKLSLYPTRSSFPCAIKACSSLFD--IFSGKQTHQQAFVFGYQSDIFVSSALI 118

Query: 167 NLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV 226
            +Y+ C  +E AR++F+ I +  +VS+ ++I  Y  +    +A+SLF++L        D 
Sbjct: 119 VMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDA 178

Query: 227 TML------SALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV 280
             L      S +S+C+ + +  L + IH ++ K G D+ V V   L+D +AK G    AV
Sbjct: 179 MFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAV 238

Query: 281 S--VFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDEITFLGLLYACS 337
           +  +FD +  KD  ++++++  YA  G  +++  +F  ++K + V+ + IT   +L A S
Sbjct: 239 ARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVS 298

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H+G +  G    +    + G+   +     ++D+  + GR++ A +  D +  K+    W
Sbjct: 299 HSGALRIG-KCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRS-W 356

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDS 426
             +++    H   G A + +E    + DS
Sbjct: 357 TAMIAGYGMH---GHAAKALELFPAMIDS 382


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/568 (39%), Positives = 335/568 (58%), Gaps = 37/568 (6%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           P  L    R T+ +  +++H   +K    +++ V   LI+  + +   S    A  +FDR
Sbjct: 123 PFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSV---ARGVFDR 179

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
             + D+V +N M  GY+RSK    ++ LF E+    +LP   +  S+L AC+ +  + L 
Sbjct: 180 SSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKL--KDLN 237

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA-- 199
            GK++H +   L +     +   LI++YA C D++ A  IF+N+    V+S+ AI+T   
Sbjct: 238 VGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFT 297

Query: 200 -----------------------------YARSSRPNEALSLFRELQERNLKPTDVTMLS 230
                                        Y + +R  E LSLFRE+Q  N+KP + TM+S
Sbjct: 298 NLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVS 357

Query: 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290
            L++CA LG+L+LG+WI  YI K  +     V  ALIDM+  CG ++ A+ +F+ M  +D
Sbjct: 358 ILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRD 417

Query: 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350
             +W+A+I   A +G G +++ MF +M+KA ++PDE+T +G+L AC+H+G+VD+G  +F 
Sbjct: 418 KISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFA 477

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
            M  ++GI P + HYGCMVDLLGRAG L EA+  I  +P+K   I+W +LL +C  H + 
Sbjct: 478 RMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDE 537

Query: 411 GLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEV 470
            +A+   ++I EL+  +G  YV+L N+ A   RWE +  +RKLM DRG+ K PGCS IE+
Sbjct: 538 EMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEM 597

Query: 471 NNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYH 530
           N  V EF +GD VH  S ++   LDE+  +LK  GY PDTS V   D+ +EEKE A+  H
Sbjct: 598 NGSVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFL-DIGEEEKESAVYRH 656

Query: 531 SEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           SEKLAI FGL+++ PG TIR+VKNLR+C
Sbjct: 657 SEKLAIAFGLISSGPGVTIRIVKNLRMC 684



 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 142/432 (32%), Positives = 240/432 (55%), Gaps = 42/432 (9%)

Query: 2   ATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLIN 61
           ATT SPP T  P       TP  LSL+  C S   LKQIH+ TI T L ++  V  ++I 
Sbjct: 4   ATTLSPPPTHLPS---LPQTP-PLSLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIA 59

Query: 62  FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPD 121
           FC ++     ME+A ++FD +P P+  ++N M +GYSR   P  A+ ++ E+L  G++PD
Sbjct: 60  FCCKH-ELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPD 118

Query: 122 DYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRI 181
           +Y++P LLK        A++ G++LH   +KLG +SN++V   LI+LY+   +V  AR +
Sbjct: 119 EYTYPFLLKRFT--RDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGV 176

Query: 182 FENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSL 241
           F+  S+  VV++N +I+ Y RS + +E++ LF E++   + P+ +T++S LS+C+ L  L
Sbjct: 177 FDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDL 236

Query: 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
           ++GK +H Y+K   ++    +  ALIDM+A CG +D A+ +FDNM  +D  +W+A++  +
Sbjct: 237 NVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGF 296

Query: 302 ATHGQ------------------------GH------KSIL-MFEEMMKAQVSPDEITFL 330
              GQ                        G+      K +L +F EM  A + PDE T +
Sbjct: 297 TNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMV 356

Query: 331 GLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389
            +L AC+H G ++ G W   Y  +++  I   + +   ++D+    G +++A R  + +P
Sbjct: 357 SILTACAHLGALELGEWIKAYIDKNEIKIDSFVGN--ALIDMYFNCGNVEKAIRIFNAMP 414

Query: 390 IKSTPILWRTLL 401
            +   I W  ++
Sbjct: 415 HRDK-ISWTAVI 425


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/567 (39%), Positives = 333/567 (58%), Gaps = 33/567 (5%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQN--------------- 66
           P  L    +  +F   +QIH   +K     DL V T LI+   QN               
Sbjct: 68  PFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSH 127

Query: 67  -------------PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVEL 113
                         +   +  A  LFD IP  D+V +N M  GY+ +     A+ LF E+
Sbjct: 128 RDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEM 187

Query: 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
           +   + PD+ ++ ++L ACA  G+  +E G+Q+H +    G +SNL +   LI+LY++C 
Sbjct: 188 MKMNVRPDESTYVTVLSACAHSGS--IELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCG 245

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
           +VE A  +F+ +S   V+S+N +I  Y   +   EAL LF+E+      P DVTMLS L 
Sbjct: 246 EVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLP 305

Query: 234 SCALLGSLDLGKWIHEYIKKY--GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDT 291
           +CA LG++D+G+WIH YI K   G+     + T+LIDM+AKCG ++ A  VF++M  K  
Sbjct: 306 ACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSL 365

Query: 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYS 351
            +W+AMI  +A HG+   S  +F  M K  + PD+ITF+GLL ACSH+G++D G + F S
Sbjct: 366 SSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRS 425

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
           M   Y + P ++HYGCM+DLLG +G   EA   I+ + ++   ++W +LL +C  H N+ 
Sbjct: 426 MTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVE 485

Query: 412 LAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVN 471
           LA+   + + +++  +   Y++LSN+ A AGRWEDV  +R L+  + + KVPGCSSIEV+
Sbjct: 486 LAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVD 545

Query: 472 NVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHS 531
           +VV EF  GD  H  + ++   L+E+   L+  G+VPDTS V   +ME+E KE ALR+HS
Sbjct: 546 SVVFEFVVGDKFHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQ-EMEEEWKEGALRHHS 604

Query: 532 EKLAITFGLLNTPPGTTIRVVKNLRVC 558
           EKLAI FGL++T PGT + +VKNLRVC
Sbjct: 605 EKLAIAFGLISTKPGTKLTIVKNLRVC 631



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 125/420 (29%), Positives = 231/420 (55%), Gaps = 42/420 (10%)

Query: 59  LINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118
           LI  C  +P    + +A  +F+ I EP+ +++NTM RG++ S  P+ ++ L+V +++ GL
Sbjct: 1   LIELCVPSPHFDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGL 60

Query: 119 LPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINL---------- 168
           LP+ Y+FP LLK+CA   ++   EG+Q+H   +KLG + +LYV T+LI++          
Sbjct: 61  LPNSYTFPFLLKSCA--KSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDA 118

Query: 169 ---------------------YAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPN 207
                                YA   D+ +A+++F+ I    VVS+NA+I+ YA +    
Sbjct: 119 YKVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYK 178

Query: 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267
           EAL LF E+ + N++P + T ++ LS+CA  GS++LG+ +H ++  +G D  +K+  ALI
Sbjct: 179 EALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALI 238

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
           D+++KCG ++ A  +F  +S KD  +W+ +I  Y       +++L+F+EM+++  +P+++
Sbjct: 239 DLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV 298

Query: 328 TFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
           T L +L AC+H G +D G W + Y  +   G+         ++D+  + G ++ A++  +
Sbjct: 299 TMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFN 358

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI----FELDDSHGGDYVILSNLCARAG 442
            +  KS    W  ++   + H     +  +  R+     E DD     +V L + C+ +G
Sbjct: 359 SMLHKSLSS-WNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDI---TFVGLLSACSHSG 414


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/531 (40%), Positives = 337/531 (63%), Gaps = 15/531 (2%)

Query: 35  RGLKQIHA--VTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNT 92
           R L+Q+HA  +T    L +    L+K++ FC  +P   ++ +A  +F +IP P+I  +N+
Sbjct: 2   RVLRQLHAHILTRPLPLSSFAFALSKIVAFCALSPF-GNINYARSVFAQIPHPNIFSWNS 60

Query: 93  MARGYSR----SKTPIRAIFLFVELLNSGL-LPDDYSFPSLLKACACVGAEALEEGKQLH 147
           + +GYS+    SK PI   FLF +L  +G  +P+ ++   +LKACA V   A  EG Q+H
Sbjct: 61  LIKGYSQIHTLSKEPI---FLFKKLTETGYPVPNSFTLAFVLKACAIV--TAFGEGLQVH 115

Query: 148 CFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPN 207
              +K G  S+L+V T+L+N Y +C ++  AR++FE +    +V++ A+I+ +AR    +
Sbjct: 116 SHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVD 175

Query: 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267
           EA+ LFRE+Q+  ++P  +T++S +S+CA+ G+LD+G W+H YI+KY +   ++++TAL+
Sbjct: 176 EAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALV 235

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
           DM+AKCG ++ A  VF +M  KDT AWS+MI+ +A HG    +I  F++M++ +V+PD +
Sbjct: 236 DMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHV 295

Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
           TFL +L AC+H GLV  G   F+S+  ++GI P ++HYGC VDLL R+G ++EAYR    
Sbjct: 296 TFLAVLSACAHGGLVSRG-RRFWSLMLEFGIEPSVEHYGCKVDLLCRSGLVEEAYRITTT 354

Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447
           + I      WR+LL  C     L L + V   + EL+  +  +Y+++SNL +   +WE +
Sbjct: 355 MKIPPNAATWRSLLMGCKKKKLLNLGEIVARYLLELEPLNAENYIMISNLYSSLSQWEKM 414

Query: 448 DYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYV 507
             LRK+MK++ +  VPGCSSIEV+ VV EF  GD  H     L++ ++E+   ++  GY 
Sbjct: 415 SELRKVMKEKCIKPVPGCSSIEVDGVVHEFVMGDQSHPEVKMLREFMEEMSMRVRDSGYR 474

Query: 508 PDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           P  S V H  + DEEKE AL  HSE+ AI +GLL T     IRVVKNLRVC
Sbjct: 475 PSISDVLH-KVVDEEKECALSEHSERFAIAYGLLKTRAPIVIRVVKNLRVC 524



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 147/287 (51%), Gaps = 12/287 (4%)

Query: 21  TPNALSL---LPRC---TSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEH 74
            PN+ +L   L  C   T+F    Q+H+  +K    + L V T L+NF  +      +  
Sbjct: 89  VPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGK---CEEIGF 145

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +F+ +P  ++V +  M  G++R      A+ LF E+  +G+ PD  +  S++ ACA 
Sbjct: 146 ARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAV 205

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
            G  AL+ G  LH +  K  + ++L + T L+++YA+C  +E A+++F ++      +++
Sbjct: 206 AG--ALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWS 263

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           ++I  +A      +A+  F+++ E  + P  VT L+ LS+CA  G +  G+     + ++
Sbjct: 264 SMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRGRRFWSLMLEF 323

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVA 300
           G++  V+     +D+  + G +++A  +   M    +   W ++++ 
Sbjct: 324 GIEPSVEHYGCKVDLLCRSGLVEEAYRITTTMKIPPNAATWRSLLMG 370


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/573 (38%), Positives = 336/573 (58%), Gaps = 39/573 (6%)

Query: 22  PNALS---LLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQN--------- 66
           PN+ +   LL  C   +  K   QIH   +K   + DL V T LI+   QN         
Sbjct: 61  PNSYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKV 120

Query: 67  -------------------PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAI 107
                               +   +E A  +FD IP  D+V +N M  GY  +     A+
Sbjct: 121 FDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEAL 180

Query: 108 FLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLIN 167
            LF E++ + + PD+ +  +++ A A  G+  +E G+Q+H +    G  SNL +   LI+
Sbjct: 181 ELFKEMMKTNVRPDESTMVTVISASARSGS--IELGRQVHSWIADHGFGSNLKIVNALID 238

Query: 168 LYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT 227
            Y++C ++E A  +F  +S   V+S+N +I  Y   +   EAL LF+E+      P DVT
Sbjct: 239 FYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVT 298

Query: 228 MLSALSSCALLGSLDLGKWIHEYIKKY--GLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285
           MLS L +CA LG++D+G+WIH YI K   G+     + T+LIDM++KCG ++ A  VF++
Sbjct: 299 MLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNS 358

Query: 286 MSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
           M  K   AW+AMI  +A HG+ + +  +F  M K ++ PD+ITF+GLL ACSH G++D G
Sbjct: 359 MLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLG 418

Query: 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS 405
            + F SM   Y I P ++HYGCM+DLLG +G   EA   I  + ++   ++W +LL +C 
Sbjct: 419 RHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACK 478

Query: 406 SHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGC 465
            H N+ L ++  + +F+++ ++ G YV+LSN+ A AGRW +V  +R L+ D+G+ KVPGC
Sbjct: 479 MHGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGC 538

Query: 466 SSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEI 525
           SSIE+++VV EF  GD  H  + ++   L+E+   L+  G+VPDTS V   +ME+E KE 
Sbjct: 539 SSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVLQ-EMEEEFKEG 597

Query: 526 ALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           ALR+HSEKLAI FGL++T P T + +VKNLRVC
Sbjct: 598 ALRHHSEKLAIAFGLISTKPETKLTIVKNLRVC 630



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 127/419 (30%), Positives = 230/419 (54%), Gaps = 42/419 (10%)

Query: 60  INFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLL 119
           + FC  +P    + +A  +F+ I EP+++++NTM RG++ S  P+ A+ L+V +++ GLL
Sbjct: 1   LEFCILSPHFEGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLL 60

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD----- 174
           P+ Y+FP LLK+CA + A   +EG Q+H   +KLG   +LYV T+LI++Y +        
Sbjct: 61  PNSYTFPFLLKSCAKLKAS--KEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAH 118

Query: 175 --------------------------VEAARRIFENISEPCVVSYNAIITAYARSSRPNE 208
                                     +E+AR +F+ I    VVS+NA+I+ Y  +    E
Sbjct: 119 KVFDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKE 178

Query: 209 ALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALID 268
           AL LF+E+ + N++P + TM++ +S+ A  GS++LG+ +H +I  +G    +K+  ALID
Sbjct: 179 ALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALID 238

Query: 269 MHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT 328
            ++KCG ++ A  +F  +S KD  +W+ +I  Y       +++L+F+EM+++  SP+++T
Sbjct: 239 FYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVT 298

Query: 329 FLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
            L +L+AC+H G +D G W + Y  +   G+         ++D+  + G ++ A++  + 
Sbjct: 299 MLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNS 358

Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI----FELDDSHGGDYVILSNLCARAG 442
           +  KS P  W  ++   + H     A  +  R+     + DD     +V L + C+ AG
Sbjct: 359 MLHKSLPA-WNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDI---TFVGLLSACSHAG 413


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/450 (43%), Positives = 307/450 (68%), Gaps = 7/450 (1%)

Query: 113 LLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172
           +L    LP+ +++P +LKACA +G   L  GK +H   +K G    + V  TL+++Y  C
Sbjct: 1   MLERKKLPNKFTYPFVLKACAGIGN--LNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCC 58

Query: 173 ----SDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTM 228
                 +E AR++F+ + +   VS++A+I  Y R  R ++A++LFRE+Q + + P ++TM
Sbjct: 59  RGGEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITM 118

Query: 229 LSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG 288
           +S LS+C  LG+L+LGKW+  Y++K  + K V+++ ALIDM AKCG +D A ++F +M  
Sbjct: 119 VSVLSACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRE 178

Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNY 348
           ++  +W+++I   A HG+G +++ +FEEM+++ V+PD++ F+GLL ACSH+GLVD+G  Y
Sbjct: 179 RNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRY 238

Query: 349 FYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408
           F SMR  + IVP I+HYGCMVD+L RAG + EA +F+ E+PI   P++WRTL+++C +H 
Sbjct: 239 FDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHG 298

Query: 409 NLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSI 468
            L L +++  ++   +  H  +YV+LSN+ A+   WE    +R+ M  +G+ K+PG + I
Sbjct: 299 ELKLGEKITRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMI 358

Query: 469 EVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALR 528
           E++N + EF +GD  H+ S ++ + +DE+ KE+K  GY+P T+ V   D++DE+KE  L 
Sbjct: 359 ELDNEIYEFVAGDKSHAQSKEIYEMVDEMGKEMKRAGYMPTTTEVLL-DIDDEDKEDTLN 417

Query: 529 YHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            HSEKLAI F LLNTPPGT IR+VKNLRVC
Sbjct: 418 RHSEKLAIAFALLNTPPGTLIRIVKNLRVC 447



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 145/294 (49%), Gaps = 11/294 (3%)

Query: 22  PNALS---LLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEH 74
           PN  +   +L  C     L   K +H   +K    +++NV   L++ +C        +E 
Sbjct: 8   PNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEF 67

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +FD + + D V ++ M  GY R      AI LF E+   G+ PD+ +  S+L AC  
Sbjct: 68  ARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTG 127

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           +G  ALE GK +  +  K  +  N+ +   LI+++A+C DV+ A  +F ++ E  +VS+ 
Sbjct: 128 LG--ALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWT 185

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK- 253
           ++I   A   R  EA+++F E+    + P DV  +  LS+C+  G +D GK   + ++K 
Sbjct: 186 SVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKD 245

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQ 306
           + +   ++    ++DM  + G + +A+     M    +   W  +I A   HG+
Sbjct: 246 FSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGE 299


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/531 (38%), Positives = 338/531 (63%), Gaps = 10/531 (1%)

Query: 31  CTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDI 87
           C   R L   +Q+HA  I    +  + + T+L+   T      +++ A  + DR+PE  +
Sbjct: 52  CIERRALWEGRQVHARMITARYRPAVFLGTRLV---TMYVRCGALDDARNVLDRMPERSV 108

Query: 88  VLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLH 147
           V + TM  GYS+++  + A+ LF+++L +G +P++Y+  ++L +C+  G +++ +GKQ+H
Sbjct: 109 VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCS--GPQSIYQGKQVH 166

Query: 148 CFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPN 207
              +K    S+++V ++L+++YA+  +++ ARR+F+ + E  VVS  AII+ YA+     
Sbjct: 167 SLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDE 226

Query: 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267
           EAL LFR+L    ++   VT  + +++ + L SLD GK +H  I +  L  +V +  +LI
Sbjct: 227 EALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLI 286

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
           DM++KCG+L  +  VFDNM  +   +W+AM++ Y  HG GH+ I +F+++ K +V PD +
Sbjct: 287 DMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHK-EVKPDSV 345

Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
           T L +L  CSH GLVDEG + F ++  +   +    HYGC++DLLGR+GRL++A   I+ 
Sbjct: 346 TLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIEN 405

Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447
           +P +STP +W +LL +C  H N+ + + V +++ E++  + G+YVILSN+ A AG W+DV
Sbjct: 406 MPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDV 465

Query: 448 DYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYV 507
             +RKLM ++ V K PG S I ++ V+  F S +  H    D+   + E+  ++K  G+V
Sbjct: 466 FKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFV 525

Query: 508 PDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           PD S V H D++DE+KE  L  HSEKLAITFGL+NTPPG TIRV+KNLR+C
Sbjct: 526 PDLSCVLH-DVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRIC 575



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 165/333 (49%), Gaps = 11/333 (3%)

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
           AC+   AL EG+Q+H   I       +++ T L+ +Y  C  ++ AR + + + E  VVS
Sbjct: 51  ACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVS 110

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +  +I+ Y+++ R  EAL LF ++      P + T+ + L+SC+   S+  GK +H  + 
Sbjct: 111 WTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLV 170

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           K   + ++ V ++L+DM+AK   + +A  VFD +  +D  + +A+I  YA  G   +++ 
Sbjct: 171 KTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALD 230

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDL 371
           +F ++    +  + +TF  L+ A S    +D G   +   +R +      +++   ++D+
Sbjct: 231 LFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQN--SLIDM 288

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
             + G+L  + R  D + ++ + + W  +L     H   GL  +VI    +L      D 
Sbjct: 289 YSKCGKLLYSRRVFDNM-LERSVVSWNAMLMGYGRH---GLGHEVISLFKDLHKEVKPDS 344

Query: 432 VILSNL---CARAGRW-EDVDYLRKLMKDRGVL 460
           V L  +   C+  G   E +D    ++K++  L
Sbjct: 345 VTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSAL 377


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/537 (40%), Positives = 328/537 (61%), Gaps = 10/537 (1%)

Query: 25  LSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           +S+LP     R L+    +H   ++   ++ +NV T L++  ++     S+  A ++FD 
Sbjct: 135 VSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSK---CGSVSIARVIFDG 191

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +    +V +N+M  GY +S     A+ +F ++L+ G+ P + +    L ACA +G   LE
Sbjct: 192 MDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGD--LE 249

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            GK +H    +L L+S++ V  +LI++Y++C  V+ A  IF+N+    +VS+NA+I  YA
Sbjct: 250 RGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYA 309

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++   NEAL+ F E+Q RN+KP   TM+S + + A L      KWIH  + +  LDK V 
Sbjct: 310 QNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVF 369

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V TAL+DM+AKCG +  A  +FD M+ +    W+AMI  Y THG G  S+ +F+EM K  
Sbjct: 370 VMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGT 429

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           + P++ITFL  L ACSH+GLV+EG  +F SM+  YGI P + HYG MVDLLGRAGRL++A
Sbjct: 430 IKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQA 489

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
           + FI ++PIK    ++  +L +C  H N+ L ++    IF+L+   GG +V+L+N+ A A
Sbjct: 490 WDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATA 549

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
             W  V  +R +M+  G+ K PGCS +E+ N V  F+SG   H  S  +   L+ LV E+
Sbjct: 550 SMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSYLETLVDEI 609

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +  GYVPDT+ +H  D+ED+ K   L  HSEKLAI FGLLNT  GT I + KNLRVC
Sbjct: 610 RAAGYVPDTNSIH--DVEDDVKVQLLNTHSEKLAIAFGLLNTSTGTPIHIRKNLRVC 664



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/430 (27%), Positives = 221/430 (51%), Gaps = 16/430 (3%)

Query: 35  RGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMA 94
           RG K+IH   I +    +L  +T ++N   +      +  A+ +FDR+PE D+V +NTM 
Sbjct: 48  RG-KEIHGSVITSGFSWNLFAMTGVVNMYAK---CRQINDAYNMFDRMPERDLVCWNTMI 103

Query: 95  RGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
            GY+++     A+ L + +   G  PD  +  S+L A A      L  G  +H + ++ G
Sbjct: 104 SGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVA--DTRLLRIGMAVHGYVLRAG 161

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
             S + V T L+++Y++C  V  AR IF+ +    VVS+N++I  Y +S     A+ +F+
Sbjct: 162 FESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQ 221

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
           ++ +  ++PT+VT++ AL +CA LG L+ GK++H+ + +  LD  V V  +LI M++KC 
Sbjct: 222 KMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCK 281

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
           R+D A  +F N+  K   +W+AMI+ YA +G  ++++  F EM    + PD  T + ++ 
Sbjct: 282 RVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIP 341

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           A +   +  +   + + +  +  +   +     +VD+  + G +  A +  D +  +   
Sbjct: 342 ALAELSIPRQA-KWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHV- 399

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDS--HGGDYVILSNL--CARAGRWED-VDY 449
           I W  ++    +H   GL K  +E   E+        D   L  L  C+ +G  E+ + +
Sbjct: 400 ITWNAMIDGYGTH---GLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCF 456

Query: 450 LRKLMKDRGV 459
              + KD G+
Sbjct: 457 FESMKKDYGI 466



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 162/309 (52%), Gaps = 4/309 (1%)

Query: 93  MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
           M +GY++S +   A+  F  + +  + P  Y+F  LLK C       L+ GK++H   I 
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCG--DNSDLKRGKEIHGSVIT 58

Query: 153 LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL 212
            G + NL+  T ++N+YA+C  +  A  +F+ + E  +V +N +I+ YA++     AL L
Sbjct: 59  SGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALML 118

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
              + E   +P  +T++S L + A    L +G  +H Y+ + G +  V V+TAL+DM++K
Sbjct: 119 VLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSK 178

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
           CG +  A  +FD M  +   +W++MI  Y   G    ++L+F++M+   V P  +T +G 
Sbjct: 179 CGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGA 238

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L+AC+  G ++ G  + + + D+  +   +     ++ +  +  R+D A      L  K 
Sbjct: 239 LHACADLGDLERG-KFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNK- 296

Query: 393 TPILWRTLL 401
           T + W  ++
Sbjct: 297 TLVSWNAMI 305


>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
          Length = 619

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 227/570 (39%), Positives = 347/570 (60%), Gaps = 19/570 (3%)

Query: 1   MATTPSPPITQS--PPPKLC---TNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNV 55
           +A+ PSP + ++   PP  C       + L LL R ++   + Q  A  +K+ L  +  V
Sbjct: 17  IASAPSPLLHRTGLSPPADCGARAAEQHCLHLLERSSAPAAVLQSLAFLLKSGLHANPLV 76

Query: 56  LTKLINFCTQNPTTSSMEH-AHLLFDRIPEPDIVLFNTMARGYSRSKTP---IRAIFLFV 111
           LT+L                A LL   +P  D  L NT+ R ++ S  P   +RA   F 
Sbjct: 77  LTRLFASSAAAAPALLEPLVAALLVPSVP-IDAFLANTLIRAHAASPLPSARLRAASFFP 135

Query: 112 ELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE 171
            +L S  LP+ ++FP LLKACA         G Q H  A+K G  ++ YV  TLI++Y+ 
Sbjct: 136 LMLRSATLPNKFTFPFLLKACAAFPGV----GVQAHAAALKFGFTTDQYVSNTLIHMYS- 190

Query: 172 CSDVE---AARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTM 228
           C   E    AR +F+ +++   V+++A+I  Y RS   ++A+ LFRE+Q   ++P +VTM
Sbjct: 191 CFGGEFLGDARNVFDRMAKSSAVTWSAMIGGYVRSGLSSDAVGLFREMQASGVRPDEVTM 250

Query: 229 LSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG 288
           +  L++ A LG+L+L +W+  +++K G+ K V +  ALID  AKCG LD A++VF  M  
Sbjct: 251 IGVLAAAADLGALELARWVGRFVEKEGIGKSVTLCNALIDALAKCGDLDGAMAVFQGMKE 310

Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNY 348
           +   +W+++I A A  G+G +++ +FEEM  A V PD++ F+G+L ACSH G+VDEG+ Y
Sbjct: 311 RTIVSWTSVIDALAMEGRGKEAVAVFEEMKTAGVRPDDVAFIGVLTACSHAGMVDEGYGY 370

Query: 349 FYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408
           F SMR  YGI P I+HYGCMVD+ GRAG ++ A  F+ ++P+K  PI+WRTL+++C +H 
Sbjct: 371 FESMRMAYGIDPKIEHYGCMVDMFGRAGMVERAMEFVHKMPMKPNPIIWRTLVAACRAHG 430

Query: 409 NLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSI 468
            L L + +   +     +H  +YV+LSN+ A   RW++   +R+ M  RG+ KVPGCS +
Sbjct: 431 RLELGETITRNLLNEYPAHEANYVMLSNVYALTRRWKEKSEIRREMSKRGIKKVPGCSLV 490

Query: 469 EVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALR 528
           E++  V EF +GD  H    ++   ++E+ +EL+  G++  TS V   D+++E+KE+AL+
Sbjct: 491 ELDGEVHEFIAGDESHPQWKEIYMMVEEMARELRRAGHISATSEVLL-DLDEEDKEVALQ 549

Query: 529 YHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +HSEKLAI F LL TPPGT +RVVKNLRVC
Sbjct: 550 WHSEKLAIAFVLLRTPPGTQVRVVKNLRVC 579


>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
           [Vitis vinifera]
          Length = 603

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/552 (40%), Positives = 332/552 (60%), Gaps = 13/552 (2%)

Query: 15  PKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEH 74
           P +  N    LSLL  C S R L +IHA  +    Q++ ++  KL+NFC  +  + S+ +
Sbjct: 17  PLMMANARAILSLLQGCNSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVS-VSGSLAY 75

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIR--AIFLFVELLN-SGLLPDDYSFPSLLKA 131
           A L+F RI  P    +N+M RG+S+S +P++  AI  +  +L+ S   PD Y+F  LLKA
Sbjct: 76  AQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKA 135

Query: 132 CACVGAEALEEGK--QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC 189
           C     EA EEGK  ++H F I+ G + ++ +CT LI  YA    +E A ++FE +    
Sbjct: 136 CE----EAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARD 191

Query: 190 VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           +VS+N++I+ Y ++    EAL ++ +++  N+     T++S LSSCA +G+L +G  +H 
Sbjct: 192 LVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHR 251

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
           +  +  L + + V  ALIDM+AKCG L  A+S+F++M  +D   W++MIV Y  HG+G +
Sbjct: 252 FAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDE 311

Query: 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369
           +I  F  M+ A V P+ ITFLGLL  CSH GLV EG  YF+ M  ++ + PGIKHYGCMV
Sbjct: 312 AITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMV 371

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429
           DL GRAG+L EA   I   P +  P+LWRTLL SC  H N+ + +  +  + +L     G
Sbjct: 372 DLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAG 431

Query: 430 DYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTD 489
           D V+LS + A A   + V  +RKL++ RG+   PG S IEV + V  F   D  H  S +
Sbjct: 432 DCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSRE 491

Query: 490 LQKALDELVKELKMVGY-VPDTSLVHHGDMEDEEK--EIALRYHSEKLAITFGLLNTPPG 546
           + + L+E++    +VGY + ++SLV   +   +E   E +  YHSEKLAI +GL  TP G
Sbjct: 492 IYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEG 551

Query: 547 TTIRVVKNLRVC 558
           T++ +VKNLRVC
Sbjct: 552 TSLLIVKNLRVC 563


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/572 (38%), Positives = 327/572 (57%), Gaps = 52/572 (9%)

Query: 27  LLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTS--SMEHAHLLFDRIPE 84
           L+    S   L QIHA  ++  L +       ++NF  Q    S   + H+  LF R P 
Sbjct: 29  LIDNSKSTHHLLQIHAALLRRGLHHH-----PILNFKLQRSYASLGHLHHSVTLFHRTPN 83

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
           P++ L+  +   ++       A+  + ++L   + P+ ++  SLLKAC       L   +
Sbjct: 84  PNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACT------LHPAR 137

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
            +H  AIK GL+S+LYV T L++ YA   DV +A+++F+ + E  +VSY A++T YA+  
Sbjct: 138 AVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHG 197

Query: 205 R-------------------------------PNEALSLFRELQER-------NLKPTDV 226
                                           PNEAL  FR++           ++P ++
Sbjct: 198 MLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEI 257

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
           T+++ LSSC  +G+L+ GKW+H Y++  G+   V+V TAL+DM+ KCG L+DA  VFD M
Sbjct: 258 TVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVM 317

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
            GKD  AW++MI+ Y  HG   +++ +F EM    V P +ITF+ +L AC+H GLV +GW
Sbjct: 318 EGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGW 377

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
             F SM+D YG+ P ++HYGCMV+LLGRAGR+ EAY  +  + ++  P+LW TLL +C  
Sbjct: 378 EVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRI 437

Query: 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCS 466
           H+N+ L +++ E +     +  G YV+LSN+ A A  W  V  +R +MK  GV K PGCS
Sbjct: 438 HSNVSLGEEIAEILVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCS 497

Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
           SIEV N V EF +GD  H  S D+   L+++   LK   Y P T  V H D+ ++EKE +
Sbjct: 498 SIEVKNRVHEFVAGDRRHPRSKDIYSMLEKMNGWLKERHYTPKTDAVLH-DIGEQEKEQS 556

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           L  HSEKLA+ FGL++T PG  I++VKNLRVC
Sbjct: 557 LEVHSEKLALAFGLISTSPGAAIKIVKNLRVC 588


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/567 (38%), Positives = 336/567 (59%), Gaps = 33/567 (5%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQN--------------- 66
           P  L    +  +F+  +Q+H   +K     DL + T LI+   QN               
Sbjct: 107 PFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSH 166

Query: 67  -------------PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVEL 113
                         +   +E AH +FD IP  D+V +N    GY+ +     A+ LF ++
Sbjct: 167 RDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKM 226

Query: 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
           + + + PD+ +  ++L ACA  G+  +E G+Q+H +    G   NL +   LI+LY++C 
Sbjct: 227 MKTNVRPDESTMVTVLSACAQSGS--IELGRQVHSWINDHGFGXNLKIVNALIDLYSKCG 284

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
           ++E A  +F+ +S   V+S+N +I  Y   +   EAL LF+++     KP DVTMLS LS
Sbjct: 285 ELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILS 344

Query: 234 SCALLGSLDLGKWIHEYIKKY--GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDT 291
           +CA LG++D+G+WIH YI K   G+     + T+LIDM+AKCG ++ A  VFD+M  +  
Sbjct: 345 ACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSL 404

Query: 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYS 351
            +W+AMI  +A HG+ + +  +F  M K  + PD+ITF+GLL ACSH+G++D G + F S
Sbjct: 405 SSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRS 464

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
           M   Y ++P ++HYGCM+DL G +G   EA + I+ + ++   ++W +LL +C  H N+ 
Sbjct: 465 MTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVE 524

Query: 412 LAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVN 471
           L +   + + +++  + G YV+LSN+ A A RW +V   R L+ D+G+ KVPGCSSIE++
Sbjct: 525 LGESYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEID 584

Query: 472 NVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHS 531
           +VV EF  GD  H  + ++   L+E+   L+  G+VPDTS V   +ME+E KE ALR+HS
Sbjct: 585 SVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQ-EMEEEWKEGALRHHS 643

Query: 532 EKLAITFGLLNTPPGTTIRVVKNLRVC 558
           EKLAI FGL++T PGT + +VKNLRVC
Sbjct: 644 EKLAIAFGLISTKPGTKLTIVKNLRVC 670



 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 145/459 (31%), Positives = 251/459 (54%), Gaps = 43/459 (9%)

Query: 20  NTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLF 79
           N P +LSLL  C + + L+ IHA  IKT L N    L+KL+  C  +P    + +A  +F
Sbjct: 2   NHP-SLSLLHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVF 60

Query: 80  DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEA 139
           D I EP ++++NTM RG++ S  P+ A+ L+V +++ GLLP+ Y+FP LLK+CA   + A
Sbjct: 61  DTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCA--KSXA 118

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINL------------------------------- 168
            +EG+QLH   +K G + +LY+ T+LI++                               
Sbjct: 119 FKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITG 178

Query: 169 YAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTM 228
           YA    +E+A ++F+ I    VVS+NA I+ YA +    EAL LF+++ + N++P + TM
Sbjct: 179 YASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTM 238

Query: 229 LSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG 288
           ++ LS+CA  GS++LG+ +H +I  +G    +K+  ALID+++KCG L+ A  +F  +S 
Sbjct: 239 VTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSN 298

Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WN 347
           KD  +W+ +I  Y       +++L+F++M+++   P+++T L +L AC+H G +D G W 
Sbjct: 299 KDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWI 358

Query: 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
           + Y  +   G+         ++D+  + G ++ A +  D +  +S    W  ++   + H
Sbjct: 359 HVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSS-WNAMIFGFAMH 417

Query: 408 NNLGLAKQVIERI----FELDDSHGGDYVILSNLCARAG 442
                A  +  R+     E DD     +V L + C+ +G
Sbjct: 418 GRANAAFDIFSRMRKNGIEPDDI---TFVGLLSACSHSG 453


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/531 (38%), Positives = 338/531 (63%), Gaps = 10/531 (1%)

Query: 31  CTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDI 87
           C   R L   +Q+HA  I    +  + + T+L+   T      +++ A  + DR+PE  +
Sbjct: 20  CIERRALWEGRQVHARMITARYRPAVFLGTRLV---TMYVRCGALDDARNVLDRMPERSV 76

Query: 88  VLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLH 147
           V + TM  GYS+++  + A+ LF+++L +G +P++Y+  ++L +C+  G +++ +GKQ+H
Sbjct: 77  VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCS--GPQSIYQGKQVH 134

Query: 148 CFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPN 207
              +K    S+++V ++L+++YA+  +++ ARR+F+ + E  VVS  AII+ YA+     
Sbjct: 135 SLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDE 194

Query: 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267
           EAL LFR+L    ++   VT  + +++ + L SLD GK +H  I +  L  +V +  +LI
Sbjct: 195 EALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLI 254

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
           DM++KCG+L  +  VFDNM  +   +W+AM++ Y  HG GH+ I +F+++ K +V PD +
Sbjct: 255 DMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHK-EVKPDSV 313

Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
           T L +L  CSH GLVDEG + F ++  +   +    HYGC++DLLGR+GRL++A   I+ 
Sbjct: 314 TLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIEN 373

Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447
           +P +STP +W +LL +C  H N+ + + V +++ E++  + G+YVILSN+ A AG W+DV
Sbjct: 374 MPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDV 433

Query: 448 DYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYV 507
             +RKLM ++ V K PG S I ++ V+  F S +  H    D+   + E+  ++K  G+V
Sbjct: 434 FKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFV 493

Query: 508 PDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           PD S V H D++DE+KE  L  HSEKLAITFGL+NTPPG TIRV+KNLR+C
Sbjct: 494 PDLSCVLH-DVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRIC 543



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 165/333 (49%), Gaps = 11/333 (3%)

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
           AC+   AL EG+Q+H   I       +++ T L+ +Y  C  ++ AR + + + E  VVS
Sbjct: 19  ACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVS 78

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +  +I+ Y+++ R  EAL LF ++      P + T+ + L+SC+   S+  GK +H  + 
Sbjct: 79  WTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLV 138

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           K   + ++ V ++L+DM+AK   + +A  VFD +  +D  + +A+I  YA  G   +++ 
Sbjct: 139 KTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALD 198

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDL 371
           +F ++    +  + +TF  L+ A S    +D G   +   +R +      +++   ++D+
Sbjct: 199 LFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQN--SLIDM 256

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
             + G+L  + R  D + ++ + + W  +L     H   GL  +VI    +L      D 
Sbjct: 257 YSKCGKLLYSRRVFDNM-LERSVVSWNAMLMGYGRH---GLGHEVISLFKDLHKEVKPDS 312

Query: 432 VILSNL---CARAGRW-EDVDYLRKLMKDRGVL 460
           V L  +   C+  G   E +D    ++K++  L
Sbjct: 313 VTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSAL 345


>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/549 (40%), Positives = 330/549 (60%), Gaps = 7/549 (1%)

Query: 13  PPPKLCTNTPNAL-SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSS 71
           P PK    + N L SL+  C+    L QIHA  I+T L  +  +  + ++    +P+   
Sbjct: 59  PLPKSRDESENQLISLIKSCSKKTHLLQIHAHIIRTSLIQNHFISLQFLSRAALSPS-RD 117

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           M ++  +F +I +P    +N M R YS S +P +  +L+ E+   G+ P+  S   ++K+
Sbjct: 118 MGYSSQVFSQIMKPSGSQYNVMIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKS 177

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C  +   +L  G Q+H   ++ G  S+  + TTL++LY+ C   E A ++F+ I +   V
Sbjct: 178 C--IRISSLMGGLQIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTV 235

Query: 192 SYNAIITAYARSSRPNEALSLFRELQER--NLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           S+N +I+    + R  +AL +F  +Q      +P DVT L  L +CA LG+L+ G+ +H 
Sbjct: 236 SWNVLISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHN 295

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
           YI+++G D  + +  +LI M+++CGRL+ A S+F  M  ++  +WSAMI  +A HG G +
Sbjct: 296 YIEEHGYDGALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGRE 355

Query: 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369
           +I  FE+M +  VSPD+ T  G+L ACSH GLVD+G  +F  M   +GI P I HYGCMV
Sbjct: 356 AIEAFEQMQQLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMV 415

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429
           DLLGRAG LD+AY+ I  + IK    LWRTLL +C  H +  L ++VI  + EL     G
Sbjct: 416 DLLGRAGLLDQAYQLIMSMVIKPDSTLWRTLLGACRIHRHATLGERVIGHLIELKAQEAG 475

Query: 430 DYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTD 489
           DYV+L N+ +  G W+ V  LRK MK++G+   PGCS+IE+   V EF   D +H  + +
Sbjct: 476 DYVLLLNIYSSVGNWDKVTDLRKFMKEKGIQTSPGCSTIELKGKVHEFVVDDILHPRTDE 535

Query: 490 LQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTI 549
           + + LDE+ K+LK+ GYV + S   H ++  EEK   L YHSEKLAI FG+L TPPGTTI
Sbjct: 536 IYEMLDEIGKQLKIAGYVAELSSELH-NLGAEEKGNRLSYHSEKLAIAFGVLATPPGTTI 594

Query: 550 RVVKNLRVC 558
           RV KNLR+C
Sbjct: 595 RVAKNLRIC 603


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/573 (38%), Positives = 339/573 (59%), Gaps = 39/573 (6%)

Query: 22  PNALS---LLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQN--------- 66
           PN+ S   LL  C   + L   +QIH   +K     D+ V T LI+   QN         
Sbjct: 63  PNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKV 122

Query: 67  -------------------PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAI 107
                               +   + +A  LFD I   D+V +N M  GY  +     A+
Sbjct: 123 FDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEAL 182

Query: 108 FLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLIN 167
            L+ +++ + + PD+ +  +++ ACA  G+  +E G+QLH +    G  SN+ +   LI+
Sbjct: 183 ELYKDMMKTNVKPDESTMVTVVSACAQSGS--IELGRQLHSWIEDHGFGSNIKIVNVLID 240

Query: 168 LYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT 227
           LY++C +VE A  +F+ +++  V+S+N +I  +   +   EAL LF+E+      P DVT
Sbjct: 241 LYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVT 300

Query: 228 MLSALSSCALLGSLDLGKWIHEYIKKY--GLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285
           MLS L +CA LG++D+G+WIH YI K   G+     + T+LIDM+AKCG ++ A  VFD+
Sbjct: 301 MLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDS 360

Query: 286 MSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
           M  +   +W+AMI  +A HG+ + +  +F +M K  + PD+ITF+GLL ACSH+G++D G
Sbjct: 361 MLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLG 420

Query: 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS 405
            + F SM   Y I P ++HYGCM+DLLG  G   EA   I  +P++   ++W +LL +C 
Sbjct: 421 RHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACK 480

Query: 406 SHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGC 465
            HNN+ L +   + + +++  + G YV+LSN+ A AGRW+ V  +R L+ D+G+ K PGC
Sbjct: 481 MHNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGC 540

Query: 466 SSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEI 525
           SSIE+++VV EF  GD  H  + ++ + L+E+   ++  G+VPDTS V   +ME+E KE 
Sbjct: 541 SSIEIDSVVHEFIIGDKFHPRNREIYRMLEEMEMLMEETGFVPDTSEVLQ-EMEEEWKEG 599

Query: 526 ALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           ALR+HSEKLAI FGL++T PGT + +VKNLRVC
Sbjct: 600 ALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVC 632



 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 117/395 (29%), Positives = 223/395 (56%), Gaps = 35/395 (8%)

Query: 58  KLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSG 117
           +LI F   +P    + +A  +F+ I EP+++++NTM RG++ +   + A+ L+V +++ G
Sbjct: 1   QLIEFSVLSPHFDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLG 60

Query: 118 LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVE- 176
           LLP+ YSFP LLK+CA   ++AL EG+Q+H   +KLG + ++YV T+LI++YA+   +E 
Sbjct: 61  LLPNSYSFPFLLKSCA--KSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLED 118

Query: 177 ------------------------------AARRIFENISEPCVVSYNAIITAYARSSRP 206
                                          AR++F+ IS   VVS+NA+I+ Y  +   
Sbjct: 119 AHKVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNF 178

Query: 207 NEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
            EAL L++++ + N+KP + TM++ +S+CA  GS++LG+ +H +I+ +G    +K+   L
Sbjct: 179 KEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVL 238

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           ID+++KCG ++ A  +F  ++ KD  +W+ +I  +       +++L+F+EM+++  SP++
Sbjct: 239 IDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPND 298

Query: 327 ITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI 385
           +T L +L AC+H G +D G W + Y  +   G+         ++D+  + G ++ A +  
Sbjct: 299 VTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVF 358

Query: 386 DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
           D +  +S    W  ++   + H     A  +  ++
Sbjct: 359 DSMLTRSLSS-WNAMIFGFAMHGKANAAFDLFSKM 392



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 87/234 (37%), Gaps = 49/234 (20%)

Query: 20  NTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N    LS+LP C     +   + IH V I   L+   N  + L +          +E A 
Sbjct: 297 NDVTMLSVLPACAHLGAIDIGRWIH-VYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAK 355

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +FD +    +  +N M  G++       A  LF ++  +G+ PDD +F  LL AC+   
Sbjct: 356 QVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACS--- 412

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE-----PCVV 191
                     H   + LG                        R IF ++S+     P + 
Sbjct: 413 ----------HSGMLDLG------------------------RHIFRSMSQDYKITPKLE 438

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245
            Y  +I          EA  + R +    ++P  V   S L +C +  +++LG+
Sbjct: 439 HYGCMIDLLGHCGLFKEAKEMIRTMP---MEPDGVIWCSLLKACKMHNNVELGE 489


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/563 (39%), Positives = 332/563 (58%), Gaps = 42/563 (7%)

Query: 31  CTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLF 90
           C+S   +KQ H++ ++  L  + + ++++  FC+ +     + +A  LF  +P PD  L+
Sbjct: 12  CSSMAEVKQQHSLLLRLGLSTNNHAMSRIFTFCSLSKH-GDINYALKLFTTLPNPDTFLY 70

Query: 91  NTMARGY-SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCF 149
           NT+ + + S S+TP  ++  +  +L   + P+ ++FPSL++AC     +  EE KQLH  
Sbjct: 71  NTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRAC-----KLEEEAKQLHAH 125

Query: 150 AIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY---------------- 193
            +K G   + Y    LI++Y     ++ ARR+F  +S+P VVS+                
Sbjct: 126 VLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEA 185

Query: 194 ----------------NAIITAYARSSRPNEALSLFRELQ-ERNLKPTDVTMLSALSSCA 236
                           NA+I  + + +R  EA +LFR ++ E+ ++       + LS+C 
Sbjct: 186 FRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACT 245

Query: 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSA 296
            +G+L+ G WIH+Y++K G+    K+ T +IDM+ KCG LD A  VF  +  K   +W+ 
Sbjct: 246 GVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNC 305

Query: 297 MIVAYATHGQGHKSILMFEEMMK-AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355
           MI  +A HG+G  +I +F+EM + A V+PD ITF+ +L AC+H+GLV+EGW YF  M D 
Sbjct: 306 MIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFRYMVDV 365

Query: 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQ 415
           +GI P  +HYGCMVDLL RAGRL+EA + IDE+P+     +   LL +C  H NL L ++
Sbjct: 366 HGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHGNLELGEE 425

Query: 416 VIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVR 475
           V  R+ ELD  + G YVIL N+ A  G+WE V  +RKLM DRGV K PG S IE+  VV 
Sbjct: 426 VGNRVIELDPENSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVKKEPGFSMIEMEGVVN 485

Query: 476 EFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLA 535
           EF +G   H  +  +   + E+++ +++VG+VPDT  V H D+ +EE+E  L YHSEKLA
Sbjct: 486 EFVAGGRDHPLAEAIYAKIYEMLESIRVVGFVPDTDGVLH-DLVEEERENPLFYHSEKLA 544

Query: 536 ITFGLLNTPPGTTIRVVKNLRVC 558
           I +GLL T  G T+RV KNLRVC
Sbjct: 545 IAYGLLKTKRGETLRVTKNLRVC 567


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/534 (41%), Positives = 328/534 (61%), Gaps = 22/534 (4%)

Query: 32  TSFRGLKQIHAVTIKT-HLQNDLNVLTKLINFCTQNPTTS--SMEHAHLLFDRIPEPDIV 88
           TS   LKQ HA+ ++T HLQ D  +   L+       T    S E +  +FD + +P++ 
Sbjct: 66  TSLHHLKQAHALILRTGHLQ-DSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVF 124

Query: 89  LFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHC 148
           L+N M +    +  P +AI L+ E++ +   P+ Y++P++LKAC+  G  A  EG Q+H 
Sbjct: 125 LWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVA--EGVQVHA 182

Query: 149 FAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPN- 207
             +K GL  + ++ ++ I +YA    +  ARRI ++            + A     R   
Sbjct: 183 HLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDD--------KGGEVDAVCMPDRKGC 234

Query: 208 --EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTA 265
             EAL +F ++Q+  ++P    + S LS+CA LG+LD G+WIH Y K+  +     + T+
Sbjct: 235 FMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTS 294

Query: 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
           L+DM+AKCGR+D A  VF+ MS K+  +W+AMI   A HG+   +I +F +M    ++P+
Sbjct: 295 LVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPN 351

Query: 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI 385
           EITF+G+L AC+H GLV +G   F SMR +YG+ P I+HYGC+VDLLGRAG L EA + +
Sbjct: 352 EITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVV 411

Query: 386 DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWE 445
             +P + TP +W  LL +C  H N+ L ++V + + EL+  + G Y +LSN+ A+AGRWE
Sbjct: 412 SSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWE 471

Query: 446 DVDYLRKLMKDRGVLKVPGCSSIEVN-NVVREFFSGDGVHSYSTDLQKALDELVKELKMV 504
           +V  +RKLMK+RG+   PG S I++    V +F  GDG H    D+ + LD++ + L+M 
Sbjct: 472 EVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQME 531

Query: 505 GYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           GY PD S V   D+++EEKE A+  HSEKLAI FGL+NT PGTTIR+VKNLRVC
Sbjct: 532 GYEPDPSQVLF-DIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVC 584


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/530 (41%), Positives = 333/530 (62%), Gaps = 15/530 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           KQ H        Q+D+ V + LI       T   +E A  +FD IP+ +IV + +M RGY
Sbjct: 96  KQTHQQAFVFGYQSDIFVSSALI---VMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGY 152

Query: 98  SRSKTPIRAIFLFVELL------NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAI 151
             +   + A+ LF +LL      ++ +  D     S++ AC+ V A+ L E   +H F I
Sbjct: 153 DLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTE--SIHSFVI 210

Query: 152 KLGLNSNLYVCTTLINLYAECSD--VEAARRIFENISEPCVVSYNAIITAYARSSRPNEA 209
           K G +  + V  TL++ YA+  +  V  AR+IF+ I +   VSYN+I++ YA+S   NEA
Sbjct: 211 KRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEA 270

Query: 210 LSLFREL-QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALID 268
             +FR L +E+ +    +T+ + L + +  G+L +GK IH+ + + GL+  V V T++ID
Sbjct: 271 FDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIID 330

Query: 269 MHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT 328
           M+ KCGR++ A   FD M  K+ ++W+AMI  Y  HG   K++ +F  M+ + V P+ IT
Sbjct: 331 MYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYIT 390

Query: 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388
           F+ +L ACSH GL D GW++F +M+ ++G+ PG++HYGCMVDLLGRAG L +AY  I ++
Sbjct: 391 FVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKM 450

Query: 389 PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVD 448
            ++   I+W +LL++C  H N+ LA+  + R+FELD S+ G Y++LS++ A +GRW+DV+
Sbjct: 451 KMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADSGRWKDVE 510

Query: 449 YLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVP 508
            +R  MK+RG++K PG S +E+N  V  F  GD  H     + + L EL ++L   GYV 
Sbjct: 511 RVRMTMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVS 570

Query: 509 DTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +TS V H D+++EEKE+ LR HSEKLAI FG++NT PG+T+ VVKNLRVC
Sbjct: 571 NTSSVCH-DVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVC 619



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/389 (25%), Positives = 194/389 (49%), Gaps = 22/389 (5%)

Query: 53  LNVLTKLINFCTQNPTTSSMEHAH-----LLFDR-IPEPDIVLFNTMARGYSRSKTPIRA 106
           + V +K   FC+ +    +  H        LF+R + + D+  +N++    +RS     A
Sbjct: 1   MKVPSKKALFCSVSRLLHTERHTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEA 60

Query: 107 IFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI 166
           +  F  +    L P   SFP  +KAC+ +    +  GKQ H  A   G  S+++V + LI
Sbjct: 61  LRAFSSMRKLSLYPTRSSFPCAIKACSSL--LDIFSGKQTHQQAFVFGYQSDIFVSSALI 118

Query: 167 NLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL--QERNLKPT 224
            +Y+ C  +E AR++F+ I +  +VS+ ++I  Y  +    +A+SLF++L  +E +   T
Sbjct: 119 VMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDAT 178

Query: 225 ----DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV 280
                + M+S +S+C+ + +  L + IH ++ K G D+ V V   L+D +AK G    AV
Sbjct: 179 MFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAV 238

Query: 281 S--VFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDEITFLGLLYACS 337
           +  +FD +  KD  ++++++  YA  G  +++  +F  ++K + V+ + IT   +L A S
Sbjct: 239 ARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVS 298

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H+G +  G    +    + G+   +     ++D+  + GR++ A    D +  K+    W
Sbjct: 299 HSGALRIG-KCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRS-W 356

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDS 426
             +++    H   G A + +E    + DS
Sbjct: 357 TAMIAGYGMH---GHAAKALELFPAMIDS 382



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 152/342 (44%), Gaps = 62/342 (18%)

Query: 163 TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK 222
           TTL N Y + +DV                S+N++I   ARS    EAL  F  +++ +L 
Sbjct: 29  TTLFNRYVDKTDV---------------FSWNSVIADLARSGDSAEALRAFSSMRKLSLY 73

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
           PT  +   A+ +C+ L  +  GK  H+    +G    + V++ALI M++ CG+L+DA  V
Sbjct: 74  PTRSSFPCAIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKV 133

Query: 283 FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL------GLLYAC 336
           FD +  ++  +W++MI  Y  +G    ++ +F++++  +   D   FL       ++ AC
Sbjct: 134 FDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISAC 193

Query: 337 S-----------HTGLVDEGWNYFYS----MRDKY------GIVPGIKHYGCMVD----- 370
           S           H+ ++  G++   S    + D Y      G+    K +  +VD     
Sbjct: 194 SRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVS 253

Query: 371 ------LLGRAGRLDEAY----RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
                 +  ++G  +EA+    R I E  +    I   T+L + S    L + K + +++
Sbjct: 254 YNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQV 313

Query: 421 FEL---DDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459
             +   DD   G  +I  ++  + GR E        MK++ V
Sbjct: 314 IRMGLEDDVIVGTSII--DMYCKCGRVETARLAFDRMKNKNV 353


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/569 (38%), Positives = 336/569 (59%), Gaps = 42/569 (7%)

Query: 28  LPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDI 87
           L  C + +   +I +  I T   +D    ++L+ F T +P    ++++  +FDRI   + 
Sbjct: 36  LHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIG-LDYSLQIFDRIENSNG 94

Query: 88  VLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLH 147
            ++NTM R Y +S +  +A+ L+  ++ + + PD+Y++P +++ACA    E    GK++H
Sbjct: 95  FMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEF--GGKEIH 152

Query: 148 CFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN----------------------- 184
              +K+G +S++YV  TLIN+YA C ++  AR++F+                        
Sbjct: 153 DHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMG 212

Query: 185 -----------ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
                      + E  +VS++A+I+ Y ++    EAL +F E+    ++  +V ++S LS
Sbjct: 213 QVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLS 272

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI----DMHAKCGRLDDAVSVFDNMSGK 289
           +CA L  +  GK IH  + + G++ YV +  ALI    DM+ KCG +++A+ VF+ M  K
Sbjct: 273 ACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEK 332

Query: 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYF 349
              +W+A+I+  A +G   +S+ MF EM    V P+EITF+G+L AC H GLVDEG  +F
Sbjct: 333 GVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHF 392

Query: 350 YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
            SM +K+GI P +KHYGCMVDLLGRAG L+EA + I+ +P+      W  LL +C  H +
Sbjct: 393 ASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGD 452

Query: 410 LGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIE 469
             + ++V  ++ EL   H G +V+LSN+ A  G WEDV  +R +MK +GV+K PGCS IE
Sbjct: 453 TEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIE 512

Query: 470 VNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRY 529
            N VV EF +GD  H +   ++  L+E+ K LKM GY PDT+ V   D+++EEKE  L  
Sbjct: 513 ANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSL-DIDEEEKETTLFR 571

Query: 530 HSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           HSEKLAI FGLL   P T IR++KNLR+C
Sbjct: 572 HSEKLAIAFGLLTISPPTPIRIMKNLRIC 600


>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/550 (40%), Positives = 331/550 (60%), Gaps = 13/550 (2%)

Query: 17  LCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           +  N    LSLL  C S R L +IHA  +    Q++ ++  KL+NFC  +  + S+ +A 
Sbjct: 1   MMANARAILSLLQGCNSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVS-VSGSLAYAQ 59

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIR--AIFLFVELLN-SGLLPDDYSFPSLLKACA 133
           L+F RI  P    +N+M RG+S+S +P++  AI  +  +L+ S   PD Y+F  LLKAC 
Sbjct: 60  LVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACE 119

Query: 134 CVGAEALEEGK--QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
               EA EEGK  ++H F I+ G + ++ +CT LI  YA    +E A ++FE +    +V
Sbjct: 120 ----EAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLV 175

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+N++I+ Y ++    EAL ++ +++  N+     T++S LSSCA +G+L +G  +H + 
Sbjct: 176 SWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFA 235

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            +  L + + V  ALIDM+AKCG L  A+S+F++M  +D   W++MIV Y  HG+G ++I
Sbjct: 236 GERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAI 295

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
             F  M+ A V P+ ITFLGLL  CSH GLV EG  YF+ M  ++ + PGIKHYGCMVDL
Sbjct: 296 TFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDL 355

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
            GRAG+L EA   I   P +  P+LWRTLL SC  H N+ + +  +  + +L     GD 
Sbjct: 356 FGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDC 415

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           V+LS + A A   + V  +RKL++ RG+   PG S IEV + V  F   D  H  S ++ 
Sbjct: 416 VLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIY 475

Query: 492 KALDELVKELKMVGY-VPDTSLVHHGDMEDEEK--EIALRYHSEKLAITFGLLNTPPGTT 548
           + L+E++    +VGY + ++SLV   +   +E   E +  YHSEKLAI +GL  TP GT+
Sbjct: 476 RKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEGTS 535

Query: 549 IRVVKNLRVC 558
           + +VKNLRVC
Sbjct: 536 LLIVKNLRVC 545


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/567 (38%), Positives = 334/567 (58%), Gaps = 33/567 (5%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQN--------------- 66
           P  L    +  +F+  +QIH   +K     DL V T LI+   QN               
Sbjct: 95  PFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPH 154

Query: 67  -------------PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVEL 113
                         +   +E+A  +FD IP  D+V +N M  GY+ +     A+ LF ++
Sbjct: 155 RDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM 214

Query: 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
           + + + PD+ +  +++ ACA  G+  +E G+Q+H +    G  SNL +   LI+LY++C 
Sbjct: 215 MKTNVRPDESTMVTVVSACAQSGS--IELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCG 272

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
           ++E A  +FE +    V+S+N +I  Y   +   EAL LF+E+      P DVTMLS L 
Sbjct: 273 ELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 332

Query: 234 SCALLGSLDLGKWIHEYIKKY--GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDT 291
           +CA LG++D+G+WIH YI K   G+     + T+LIDM+AKCG ++ A  VF+++  K  
Sbjct: 333 ACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSL 392

Query: 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYS 351
            +W+AMI  +A HG+   S  +F  M K  + PD+ITF+GLL ACSH+G++D G + F S
Sbjct: 393 SSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRS 452

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
           M   Y + P ++HYGCM+DLLG +G   EA   I+ + ++   ++W +LL +C  H N+ 
Sbjct: 453 MTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVE 512

Query: 412 LAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVN 471
           L +   + + +++  + G YV+LSN+ A AGRW +V   R L+ D+G+ KVPGCSSIE++
Sbjct: 513 LGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIEID 572

Query: 472 NVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHS 531
           +VV EF  GD  H  + ++   L+E+   L+  G+VPDTS V   +ME+E KE ALR+HS
Sbjct: 573 SVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQ-EMEEEWKEGALRHHS 631

Query: 532 EKLAITFGLLNTPPGTTIRVVKNLRVC 558
           EKLAI FGL++T PGT + +VKNLRVC
Sbjct: 632 EKLAIAFGLISTKPGTKLTIVKNLRVC 658



 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 137/445 (30%), Positives = 249/445 (55%), Gaps = 42/445 (9%)

Query: 34  FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM 93
            + L+ IHA  IKT L N    L+KLI FC  +P    + +A  +F+ I EP+++++NTM
Sbjct: 3   LQSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTM 62

Query: 94  ARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL 153
            RG++ S  P+ A+ L+V +++ GLLP+ Y+FP LLK+CA   ++A +EG+Q+H   +KL
Sbjct: 63  FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCA--KSKAFKEGQQIHGHVLKL 120

Query: 154 GLNSNLYVCTTLINLYAECSD-------------------------------VEAARRIF 182
           G + +LYV T+LI++Y +                                  +E A+++F
Sbjct: 121 GCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMF 180

Query: 183 ENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242
           + I    VVS+NA+I+ YA +    EAL LF+++ + N++P + TM++ +S+CA  GS++
Sbjct: 181 DEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIE 240

Query: 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYA 302
           LG+ +H +I  +G    +K+  ALID+++KCG L+ A  +F+ +  KD  +W+ +I  Y 
Sbjct: 241 LGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYT 300

Query: 303 THGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPG 361
                 +++L+F+EM+++  +P+++T L +L AC+H G +D G W + Y  +   G+   
Sbjct: 301 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANA 360

Query: 362 IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI- 420
                 ++D+  + G ++ A++  + +  KS    W  ++   + H     +  +  R+ 
Sbjct: 361 SSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS-WNAMIFGFAMHGRADASFDIFSRMR 419

Query: 421 ---FELDDSHGGDYVILSNLCARAG 442
               E DD     +V L + C+ +G
Sbjct: 420 KNGIEPDDI---TFVGLLSACSHSG 441


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/566 (39%), Positives = 345/566 (60%), Gaps = 20/566 (3%)

Query: 8   PITQSPPPKLCTNTP------NALSLLPRCTSFRGLKQIHAVTIKTHLQ--NDLNVLTKL 59
           P  Q   PK     P      + +SL+ RC     L+  HA   +  L        L+KL
Sbjct: 48  PRMQLLKPKEAATLPREALEAHIVSLVRRCPGLLALRSAHAHLTRLRLPRLTAAFALSKL 107

Query: 60  INFCTQNPTTSSMEHAHL-----LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL 114
           +  C   P  ++ + A       LFD+IP+P    +N++ R    + +   A+ ++  +L
Sbjct: 108 LASCVSAPAPAAAQAAASSYARNLFDQIPDPTAFCYNSLIRALPAAGSAP-ALAVYRRML 166

Query: 115 NSGL-LPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
            +G   P+ ++    LKACA V A    EG+QLH  A++ GL ++ YV T L+NLYA+C 
Sbjct: 167 RAGSPRPNSFTLAFALKACAAVPAPG--EGRQLHAQALRQGLATSAYVQTGLLNLYAKCE 224

Query: 174 DVEAARRIFENIS-EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232
            V  AR +F+ ++ +  +V+++A+++ Y+R    NEAL LFRE+Q   ++P +VTM+S +
Sbjct: 225 QVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVI 284

Query: 233 SSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ 292
           S+CA  G+LDLGKW+H YI + G+   ++++TALIDM+AKCG ++ A  VFD M  KDT+
Sbjct: 285 SACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTK 344

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
           AWSAMIV +A HG    ++ +F  M++ +V P+ +TF+G+L AC+H+GLV++G  Y +S+
Sbjct: 345 AWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRY-WSI 403

Query: 353 RDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGL 412
               GI P +++YGCMVDLL R+G LD+AY F+  +P+    ++WRTLL +C S N + +
Sbjct: 404 MQNLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDI 463

Query: 413 AKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNN 472
           A+   +R+ EL+  +  +YV+LSNL A   +W+ V YLR+ MK + V  + G SSIE+N 
Sbjct: 464 AESATKRLLELEPHNPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEING 523

Query: 473 VVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSE 532
            + EF   D  H    +++  L E+   ++  G+ P T+ V H D+ +EEKE AL  HSE
Sbjct: 524 HLHEFVVSDDSHPEIREIRLVLREMADRVRRAGHKPWTAAVLH-DVGEEEKEAALCQHSE 582

Query: 533 KLAITFGLLNTPPGTTIRVVKNLRVC 558
           +LAI +GLL T     IRVVKNLR C
Sbjct: 583 RLAIAYGLLKTRAPHVIRVVKNLRFC 608


>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/419 (47%), Positives = 285/419 (68%), Gaps = 1/419 (0%)

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
           + EG+++H  AI+ G  S ++V  TL+++YA C   E+A ++FE ++E  +V++N++I  
Sbjct: 11  VREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVING 70

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
           YA + RPNEAL+LFRE+  R ++P   TM+S LS+CA LG+L LG+  H Y+ K GLD  
Sbjct: 71  YALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGN 130

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           +    AL+D++AKCG +  A  VFD M  K   +W+++IV  A +G G +++ +F+E+ +
Sbjct: 131 LHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELER 190

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
             + P EITF+G+LYACSH G+VDEG++YF  M+++YGIVP I+HYGCMVDLLGRAG + 
Sbjct: 191 KGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVK 250

Query: 380 EAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439
           +A+ FI  +P++   ++WRTLL +C+ H +L L +    ++ +L+  H GDYV+LSNL A
Sbjct: 251 QAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYA 310

Query: 440 RAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVK 499
              RW DV  +R+ M   GV K PG S +E+ N + EF  GD  H  + ++   L E+ K
Sbjct: 311 SEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITK 370

Query: 500 ELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            LK+ GYVP  S V   D+E+EEKE AL YHSEK+AI F L+NT  G  IRVVKNLRVC
Sbjct: 371 LLKLEGYVPHISNV-LADIEEEEKETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVC 428



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 167/321 (52%), Gaps = 12/321 (3%)

Query: 35  RGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMA 94
           R  +++H++ I+   ++ + V   L++           E AH LF+ + E ++V +N++ 
Sbjct: 12  REGEKVHSIAIRNGFESLVFVQNTLVHMYA---ACGHAESAHKLFELMAERNLVTWNSVI 68

Query: 95  RGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
            GY+ +  P  A+ LF E+   G+ PD ++  SLL ACA +GA AL  G++ H + +K+G
Sbjct: 69  NGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALAL--GRRAHVYMVKVG 126

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           L+ NL+    L++LYA+C  +  A ++F+ + E  VVS+ ++I   A +    EAL LF+
Sbjct: 127 LDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFK 186

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEYIKKYGLDKYVKVNTALIDMHAKC 273
           EL+ + L P+++T +  L +C+  G +D G  +     ++YG+   ++    ++D+  + 
Sbjct: 187 ELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRA 246

Query: 274 GRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
           G +  A     NM  + +   W  ++ A   HG      L   E+ +AQ+   E    G 
Sbjct: 247 GLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGH-----LALGEVARAQLLQLEPKHSGD 301

Query: 333 LYACSHTGLVDEGWNYFYSMR 353
               S+    ++ W+  + +R
Sbjct: 302 YVLLSNLYASEQRWSDVHKVR 322


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/537 (40%), Positives = 330/537 (61%), Gaps = 10/537 (1%)

Query: 25  LSLLPRCT---SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           +S+LP      S R  + IH  +++   ++ +NV T L++  ++     S+  A L+FDR
Sbjct: 280 VSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSK---CGSVGTARLIFDR 336

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +    +V +N+M  GY ++  P  A+ +F ++++  +   + +    L ACA +G   +E
Sbjct: 337 MTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGD--VE 394

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           +G+ +H    +L L S++ V  +LI++Y++C  V+ A  IFEN+    +VS+NA+I  YA
Sbjct: 395 QGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYA 454

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++ R NEA+  F ++Q +N+KP   TM+S + + A L  L   KWIH  + +  LDK V 
Sbjct: 455 QNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVF 514

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V TAL+DM+AKCG +  A  +FD M  +    W+AMI  Y THG G  ++ +FE+M K  
Sbjct: 515 VATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEV 574

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           + P+E+TFL +L ACSH+GLV+EG+ YF SM+  YG+ P + HYG MVDLLGRA RL+EA
Sbjct: 575 IKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEA 634

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
           + FI ++PI+    ++  +L +C  H N+ L ++   RIF+LD   GG +V+L+N+ A A
Sbjct: 635 WDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATA 694

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
             W+ V  +R  M+ +G+ K PG S +E+ N V  F+SG   H  +  +   L+ L   +
Sbjct: 695 SMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRI 754

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K  GY+PDT+ VH  D+ED  KE  L  HSEKLAI F LLNT PGTTI + KNLRVC
Sbjct: 755 KAAGYMPDTNSVH--DVEDVVKEQLLNSHSEKLAIAFSLLNTSPGTTIHLRKNLRVC 809



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 126/396 (31%), Positives = 217/396 (54%), Gaps = 12/396 (3%)

Query: 8   PITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLIN-FCTQN 66
           P +++  P      P+A+ LL  CTS + L Q   + IK  L ++    TKL++ FC   
Sbjct: 65  PSSRTYIPSHVYKHPSAI-LLELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCK-- 121

Query: 67  PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFP 126
               S+  A  +F  I +    L++TM +GY+R+ +   A+  F  +   G+ P  Y+F 
Sbjct: 122 --FGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFT 179

Query: 127 SLLKACACVGAEA-LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
            LLK C   G  A L +GK++HC  I  G  SN++  T ++N+YA+C  VE A ++F+ +
Sbjct: 180 YLLKVC---GDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRM 236

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245
            E  +V +N II+ YA++     AL L   +QE   +P  +T++S L + A +GSL +G+
Sbjct: 237 PERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGR 296

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
            IH Y  + G + +V V+TAL+DM++KCG +  A  +FD M+GK   +W++MI  Y  +G
Sbjct: 297 SIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNG 356

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY 365
               ++ +F++MM  QV    +T +G L+AC+  G V++G  + + + D+  +   +   
Sbjct: 357 DPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQG-RFVHKLLDQLELGSDVSVM 415

Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
             ++ +  +  R+D A    + L  K T + W  ++
Sbjct: 416 NSLISMYSKCKRVDIAAEIFENLQHK-TLVSWNAMI 450


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/520 (41%), Positives = 319/520 (61%), Gaps = 7/520 (1%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           +H   +K  L    +V+T L++  ++      M+ A  LFDR+  PD+V +N +  GYS 
Sbjct: 234 VHGYGVKCGLAEHEHVVTGLMSLYSK---CGDMDSAQFLFDRMDNPDLVAYNALISGYSV 290

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
           +     ++ LF EL  SG  P+  +  +++   +  G E L   + LH F +K  L+++ 
Sbjct: 291 NGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELL--ARCLHAFVVKARLDADA 348

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
            V T L  LY   +D+E+AR IF+ + E  + S+NA+I+ YA++     A++LF+ +QE 
Sbjct: 349 LVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQEL 408

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
           N++P  +T+ S LS+CA LG+L LGKW+H  I K  L+  V V TALIDM+AKCG + +A
Sbjct: 409 NVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEA 468

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
            S+FD M  K+  +W+AMI  Y  HGQG +++ ++++M+ A++ P   TFL ++YACSH 
Sbjct: 469 RSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHG 528

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST-PILWR 398
           GLVDEG   F  M ++Y I PGI+H  CMVDLLGRAG+L+EA   I E P  +  P +W 
Sbjct: 529 GLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGVWG 588

Query: 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458
            LL +C  H N  LAK   +++FELD  + G YV+LSNL      + +   +R+  K R 
Sbjct: 589 ALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRK 648

Query: 459 VLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDM 518
           ++K PGC+ IE+ +    F +GD +H  S  +   L+ L  ++   GY P T    + D+
Sbjct: 649 LVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAIYSYLERLTAKMIEAGYQPVTEAALY-DV 707

Query: 519 EDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           E+EEKE  ++ HSEKLAI FGLL+T PGT IR++KNLRVC
Sbjct: 708 EEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVC 747



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 192/373 (51%), Gaps = 12/373 (3%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           + +H +++      D  V + L     +    S  + A  +FD +P PD +L+NT+  G 
Sbjct: 134 RTLHGLSVAAGYAADTFVASALAKLYFK---LSRGDDARKVFDTVPSPDTILWNTLLAGL 190

Query: 98  SRSKTPIRAIFLFVELLNSGLL-PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
             S+    A+  FV ++++G + PD  +  S L+A A   A  +  G+ +H + +K GL 
Sbjct: 191 PGSE----ALEAFVRMVDAGRVRPDSTTLASSLRAAA--EASHMAMGRCVHGYGVKCGLA 244

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            + +V T L++LY++C D+++A+ +F+ +  P +V+YNA+I+ Y+ +     ++ LF+EL
Sbjct: 245 EHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKEL 304

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
                +P   T+++ +   +  G   L + +H ++ K  LD    V+TAL  ++ +   +
Sbjct: 305 TASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDM 364

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           + A S+FD M  K  ++W+AMI  YA +G    ++ +F+ M +  V P+ IT    L AC
Sbjct: 365 ESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSAC 424

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           +H G +  G  + + +  K  +   +     ++D+  + G + EA    D +  K+  + 
Sbjct: 425 AHLGALSLG-KWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNV-VS 482

Query: 397 WRTLLSSCSSHNN 409
           W  ++S    H  
Sbjct: 483 WNAMISGYGLHGQ 495


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/570 (38%), Positives = 348/570 (61%), Gaps = 36/570 (6%)

Query: 1   MATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFR-GLKQIHAVTIK-----------TH 48
           ++TTP  P+T+             + LL  C S +  L+ IHA +I+            H
Sbjct: 10  LSTTPEYPLTK------------CIYLLQFCASSKHKLRXIHAFSIRHGVLLNNPDMGKH 57

Query: 49  LQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIF 108
           L   +  L+  +++   N  T  + +A+ +F  I  P++  +NTM RGY+ S  P  A+ 
Sbjct: 58  LIFTIVSLSAPMSYA-YNVFTWVLSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALR 116

Query: 109 LFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINL 168
            + +++ S + PD +++P LLKA +   +  + EG+ +H   I+ G  S ++V  +L+++
Sbjct: 117 FYRQMIVSRIEPDTHTYPFLLKAIS--KSLNVREGEAIHSVTIRNGFESLVFVQNSLLHI 174

Query: 169 YAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTM 228
           YA C D E+A  +FE + +  +V+  ++I  +A + RP+EAL+LFRE+    ++P   T+
Sbjct: 175 YAACGDTESAHNVFELMRDRDLVAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTV 234

Query: 229 LSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG 288
           +S LS+ A LG+L+LG+ +H Y+ K GL +   V  +L+D++AKC    DA+   +    
Sbjct: 235 VSLLSASAELGALELGRRVHVYLLKVGLRENSHVTNSLLDLYAKC----DAIWEXE---- 286

Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNY 348
           ++  +W+++IV  A +G G +++ +F EM    + P EITF+G+LYACSH G++DEG++Y
Sbjct: 287 RNAVSWTSLIVGLAVNGFGEEALELFREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDY 346

Query: 349 FYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408
           F  M++++GI+P I+HYGCMVDLL RAG + +AY +I  +P++   + WRTLL +C+ H 
Sbjct: 347 FRRMKEEFGIMPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTIHG 406

Query: 409 NLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSI 468
           +LGL +     + +L+  H GDYV+LSNL     RW DV  +R+ M   GV K  G S +
Sbjct: 407 HLGLGETARSHLLKLEPKHSGDYVLLSNLYTSECRWADVQLIRRSMLKDGVKKTSGYSLV 466

Query: 469 EVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALR 528
           E+ N V EF  G+  H  S D+   L+++ + LK+ GYVP T+ V   D+E+EEKE AL 
Sbjct: 467 ELGNRVYEFTMGNRSHPQSQDVYALLEKITELLKLEGYVPHTANV-LADIEEEEKEQALS 525

Query: 529 YHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           YHSEK AI F  LNT PGTTIRV+KNLRVC
Sbjct: 526 YHSEKXAIAFMRLNTAPGTTIRVMKNLRVC 555


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/520 (41%), Positives = 316/520 (60%), Gaps = 7/520 (1%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           +HA   K  L    +V+T LI+   +      ME A  LFDR+  PD+V +N +  GYS 
Sbjct: 243 VHAFGEKCGLAQHEHVVTGLISLYAK---CGDMECARHLFDRMEGPDLVTYNALISGYSI 299

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
           +     ++ LF EL+  GL P   +  +L+   +  G E L     LH   +K GL++N 
Sbjct: 300 NGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPL--AGCLHAHVVKAGLDANA 357

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
            V T L  LY   +D+++ARR F+ + E  + S+NA+I+ YA++     A++LF+++Q  
Sbjct: 358 PVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQAL 417

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
           N++P  +T+ SALS+CA LG+L LGKW+H+ I    L+  V V TALIDM+ KCG + +A
Sbjct: 418 NVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEA 477

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
             +FD+M  K+  +W+ MI  Y  HGQG +++ ++++MM A + P   TFL +LYACSH 
Sbjct: 478 RCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHG 537

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST-PILWR 398
           GLV EG   F SM   YGI PGI+H  CMVDLLGRAG+L EA+  I E P  +  P +W 
Sbjct: 538 GLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWG 597

Query: 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458
            LL +C  H +  LAK   +++FEL+  + G YV+LSNL     ++ +   +R+  K R 
Sbjct: 598 ALLGACMVHKDGDLAKLASQKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRK 657

Query: 459 VLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDM 518
           ++K PGC+ IE+ +    F +GD  H  S  +   L++L  ++   GY PDT    + D+
Sbjct: 658 LVKTPGCTLIEIGDRPHVFMAGDRAHPQSDAIYLYLEKLTAKMIEAGYRPDTEAALY-DV 716

Query: 519 EDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           E+EEKE  ++ HSEKLAI FGLLNT PGT IR++KNLRVC
Sbjct: 717 EEEEKEHMVKVHSEKLAIAFGLLNTEPGTEIRIIKNLRVC 756



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 122/443 (27%), Positives = 214/443 (48%), Gaps = 24/443 (5%)

Query: 29  PRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIV 88
           P   +   L+ +HA+ + +    D  V + L        T S    A  +FD +P PD V
Sbjct: 134 PPSAASAALRPLHALAVASGFAADNFVASALAKLYF---TLSRGNDARKVFDAVPSPDTV 190

Query: 89  LFNTMARGYSRSKTPIRAIFLFVELLNSG-LLPDDYSFPSLLKACACVGAEALEEGKQLH 147
           L+NT+  G S S+    A+  FV +  +G + PD  +  S+L A A V    +  G+ +H
Sbjct: 191 LWNTLLAGLSGSE----ALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTM--GRCVH 244

Query: 148 CFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPN 207
            F  K GL  + +V T LI+LYA+C D+E AR +F+ +  P +V+YNA+I+ Y+ +    
Sbjct: 245 AFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVG 304

Query: 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267
            ++ LF+EL    L+P+  T+++ +   +  G   L   +H ++ K GLD    V+TAL 
Sbjct: 305 SSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALT 364

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
            ++ +   +D A   FD M  K  ++W+AMI  YA +G    ++ +F++M    V P+ +
Sbjct: 365 TLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPL 424

Query: 328 TFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
           T    L AC+  G +  G W +     +K  +   +     ++D+  + G + EA    D
Sbjct: 425 TISSALSACAQLGALSLGKWVHKIIANEKLEL--NVYVMTALIDMYVKCGSIAEARCIFD 482

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH----GGDYVILSNLCARAG 442
            +  K+  + W  ++S    H   G   + ++   ++ D+H       ++ +   C+  G
Sbjct: 483 SMDNKNV-VSWNVMISGYGLH---GQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGG 538

Query: 443 RW-EDVDYLRKLMKDRGVLKVPG 464
              E     R +  D G+   PG
Sbjct: 539 LVKEGTTVFRSMTSDYGI--TPG 559


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/537 (39%), Positives = 331/537 (61%), Gaps = 16/537 (2%)

Query: 26  SLLPRCTSFRGL----KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           S L +C S RG     K++H        +  + V+  L+N   +    + +E A  LFD 
Sbjct: 59  SELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVK---FNLLEEAEDLFDE 115

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +PE ++V + TM   YS +K   +A+   + +   G+ P+ +++ S+L+AC     + L 
Sbjct: 116 MPERNVVSWTTMISAYS-NKLNDKALKCLILMFREGVRPNMFTYSSVLRAC-----DGLP 169

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
             +QLHC  IK GL S+++V + LI++Y++ SD++ A  +F+ +    +V +N+II  +A
Sbjct: 170 NLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFA 229

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++S  NEAL+LF+ ++         T+ S L +C  L  L+LG+ +H ++ K+  D+ + 
Sbjct: 230 QNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKF--DQDLI 287

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           +N ALIDM+ KCG L+DA S F  M  KD  +WS M+   A +G   +++ +FE M ++ 
Sbjct: 288 LNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESG 347

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
             P+ IT LG+L+ACSH GLV++GW YF SM+  +G+ PG +HYGC++DLLGRAGRLDEA
Sbjct: 348 SRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEA 407

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
            + I E+  +   + WRTLL +C  H N+ LA    ++I EL+    G Y++LSN+ A  
Sbjct: 408 VKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANT 467

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
            RWEDV  +RK M +RG+ K PGCS IEV+  +  F  GD  H    ++ + L++L++ +
Sbjct: 468 QRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLNDLIERV 527

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             VGYVPDT+ V   D+E E+KE +LRYHSEKLAI FGL+N     T+R+ KNLR+C
Sbjct: 528 MGVGYVPDTNFVLQ-DLEGEQKEDSLRYHSEKLAIMFGLMNLSREKTVRIRKNLRIC 583



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 94/203 (46%), Gaps = 22/203 (10%)

Query: 226 VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285
           +T    +  C+  G++  GK +HE+I   G +  + V   L++M+ K   L++A  +FD 
Sbjct: 56  ITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDE 115

Query: 286 MSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS-------- 337
           M  ++  +W+ MI AY ++    K++     M +  V P+  T+  +L AC         
Sbjct: 116 MPERNVVSWTTMISAY-SNKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLRQL 174

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H G++            K G+   +     ++D+  +   LD A    DE+P +   ++W
Sbjct: 175 HCGII------------KTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDL-VVW 221

Query: 398 RTLLSSCSSHNNLGLAKQVIERI 420
            +++   + +++   A  + +R+
Sbjct: 222 NSIIGGFAQNSDGNEALNLFKRM 244


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/543 (40%), Positives = 339/543 (62%), Gaps = 14/543 (2%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQ--NDLNVLTKLINFCTQNPTTSSMEHAHL----- 77
           +SL+ RC     L+  HA   +  L        L+KL+  C   P  ++ + A       
Sbjct: 22  VSLVRRCPGLLALRSAHAHLTRLRLPRLTAAFALSKLLASCVSAPAPAAAQAAASSYARN 81

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL-LPDDYSFPSLLKACACVG 136
           LFD+IP+P    +N++ R    + +   A+ ++  +L +G   P+ ++    LKACA V 
Sbjct: 82  LFDQIPDPTAFCYNSLIRALPAAGSA-PALAVYRRMLRAGSPRPNSFTLAFALKACAAVP 140

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS-EPCVVSYNA 195
           A    EG+QLH  A++ GL ++ YV T L+NLYA+C  V  AR +F+ ++ +  +V+++A
Sbjct: 141 APG--EGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSA 198

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +++ Y+R    NEAL LFRE+Q   ++P +VTM+S +S+CA  G+LDLGKW+H YI + G
Sbjct: 199 MVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKG 258

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
           +   ++++TALIDM+AKCG ++ A  VFD M  KDT+AWSAMIV +A HG    ++ +F 
Sbjct: 259 ITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFS 318

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
            M++ +V P+ +TF+G+L AC+H+GLV++G  Y +S+    GI P +++YGCMVDLL R+
Sbjct: 319 RMLELKVRPNNVTFIGVLSACAHSGLVEDGRRY-WSIMQNLGIKPSMENYGCMVDLLCRS 377

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
           G LD+AY F+  +P+    ++WRTLL +C S N + +A+   +R+ EL+  +  +YV+LS
Sbjct: 378 GLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYVLLS 437

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           NL A   +W+ V YLR+ MK + V  + G SSIE+N  + EF   D  H    +++  L 
Sbjct: 438 NLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREIRLVLR 497

Query: 496 ELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNL 555
           E+   ++  G+ P T+ V H D+ +EEKE AL  HSE+LAI +GLL T     IRVVKNL
Sbjct: 498 EMADRVRRAGHKPWTAAVLH-DVGEEEKEAALCQHSERLAIAYGLLKTRAPHVIRVVKNL 556

Query: 556 RVC 558
           R C
Sbjct: 557 RFC 559


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/570 (37%), Positives = 344/570 (60%), Gaps = 27/570 (4%)

Query: 7   PPITQSP-PPKLCTNTPNA-----LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLI 60
           PP+  SP  P+L  +   A     L LL   ++   L Q  A  +K+ L  +  VLT+L 
Sbjct: 2   PPLVSSPSAPRLSPSAARAAEQHCLRLLAASSTPTSLLQSVAFLLKSGLHANSLVLTRLF 61

Query: 61  NFCTQ------NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRS---KTPIRAIFLFV 111
                      +P  ++     LL   +P  D  L NT+ R ++ S      +RA   F 
Sbjct: 62  AASASAAPALLDPLVAA-----LLRPSVPL-DAFLANTLIRAHATSPIHSLRLRAAAFFP 115

Query: 112 ELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE 171
            +L   ++P+ ++FP LLKACA +     + G Q H  A+K G  ++ YV  TLI++Y+ 
Sbjct: 116 LMLRGAVVPNKFTFPFLLKACAALPGSP-DVGLQAHAAALKFGFATDQYVSNTLIHMYS- 173

Query: 172 CSD---VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTM 228
           C     +  AR +F+ + +   V+++A+I  Y R    ++A+ LFRE+Q   ++  +VT+
Sbjct: 174 CFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQADEVTV 233

Query: 229 LSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG 288
           +  L++   LG+L+L +W+  ++++ G+ K V +  ALID  AKCG +D AV+VF+ M  
Sbjct: 234 IGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQ 293

Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNY 348
           +   +W+++I A A  G+G +++ +FEEM  A V PD++ F+G+L ACSH G+VDEG  Y
Sbjct: 294 RSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGY 353

Query: 349 FYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408
           F +M+ +YGI P I+HYGCMVD+ GRAG ++ A  F+  +PI+  P++WR+L+S+C +H 
Sbjct: 354 FDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHG 413

Query: 409 NLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSI 468
            L L + +   +     +H  +Y++LSN+ A   RW++   +R+ M  RG+ KVPGCS +
Sbjct: 414 RLELGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIV 473

Query: 469 EVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALR 528
           E++  V EF +GD  H    D+ + ++E+ +EL+ VG++  TS V   D+++E+KE AL+
Sbjct: 474 ELDGEVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEVLL-DLDEEDKEGALQ 532

Query: 529 YHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +HSEKLAI F LL TPPGT +RVVKNLRVC
Sbjct: 533 WHSEKLAIAFALLRTPPGTQVRVVKNLRVC 562


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/534 (41%), Positives = 319/534 (59%), Gaps = 7/534 (1%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP 85
           SL   C +    KQIH  + K    +D      L+N  +      S   A  +FD++ + 
Sbjct: 93  SLFKSCRNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVS---ARKVFDKMEDK 149

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNS-GLLPDDYSFPSLLKACACVGAEALEEGK 144
            +V + TM   +++   P  A+ LF  ++ S  + P++ +  ++L ACA   A  L   K
Sbjct: 150 TVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACA--RARDLAMVK 207

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           ++H +  + G   ++ + T L+++Y +C  V+ AR +F+   E  + S+N +I  +   S
Sbjct: 208 RIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDS 267

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
              EAL LFRE+Q + +K   VTM S L +C  LG+L+LGKW+H YIKK  +D  V + T
Sbjct: 268 NYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGT 327

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
           AL+DM+AKCG ++ A+ VF  M  KD   W+A+I+  A  GQ   ++  F+EM    V P
Sbjct: 328 ALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKP 387

Query: 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF 384
           D ITF+G+L ACSH G VDEG ++F SM D YGI P I+HYG +VD+LGRAGR+ EA   
Sbjct: 388 DAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEEL 447

Query: 385 IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444
           I  +P+     +   LL +C  H NL  A++  +++ E+D  H G YV+LSN+   + +W
Sbjct: 448 IKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKW 507

Query: 445 EDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMV 504
           E+    R+LM +RG+ K PGCS IEV+ VV EF  GD  H  S+++ + L++++ +LK  
Sbjct: 508 EEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSSEINEMLEDMISKLKNA 567

Query: 505 GYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           GYVPD S V   DM +EEKE  L  HSEKLAI FGLL+T  GT IRVVKNLR+C
Sbjct: 568 GYVPDKSEVLF-DMAEEEKETELSLHSEKLAIAFGLLSTSVGTPIRVVKNLRIC 620



 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 124/378 (32%), Positives = 213/378 (56%), Gaps = 14/378 (3%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           LKQIHA  ++T L  D    +K++ FC+   +  S+++A L+F +IP P     N++ RG
Sbjct: 4   LKQIHAQMLRTGLFFDPFTASKIVAFCSLQES-GSLQYARLVFSQIPNPTSYTCNSIIRG 62

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
            +       A+  + E++  GL+PD Y+FPSL K+C         EGKQ+HC + KLG  
Sbjct: 63  CTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSC-----RNSSEGKQIHCHSTKLGFA 117

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLF-RE 215
           S+ Y   TL+N+Y+ C  + +AR++F+ + +  VVS+  +I  +A+  +PNEA+ LF R 
Sbjct: 118 SDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRM 177

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
           ++  N+KP +VT+++ L++CA    L + K IHEYI ++G  ++V +NT L+D++ KCG 
Sbjct: 178 MKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGC 237

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           +  A  +FD    K+  +W+ MI  +       +++L+F EM    +  D++T   LL A
Sbjct: 238 VQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLA 297

Query: 336 CSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           C+H G ++ G W + Y  + +  +   +     +VD+  + G ++ A +   E+P K   
Sbjct: 298 CTHLGALELGKWLHAYIKKQRIDVDVALG--TALVDMYAKCGSIETAIQVFHEMPEKDV- 354

Query: 395 ILWRTL---LSSCSSHNN 409
           + W  L   L+ C    N
Sbjct: 355 MTWTALILGLAMCGQAEN 372


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/515 (41%), Positives = 318/515 (61%), Gaps = 9/515 (1%)

Query: 46  KTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIR 105
           K+ L++ ++    +  + +Q      ++ A  LFD IP  D+V +N M  GY +S     
Sbjct: 191 KSSLRDAVSFTALITGYVSQ----GCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEE 246

Query: 106 AIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTL 165
           AI  F E+  + +LP+  +   +L AC      + E GK +  +    G  SNL +   L
Sbjct: 247 AIVCFYEMQEANVLPNKSTMVVVLSACG--HTRSGELGKWIGSWVRDNGFGSNLQLTNAL 304

Query: 166 INLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTD 225
           I++Y +C + + AR +F+ I E  V+S+N +I  Y+  S   EAL+LF  +   N+KP D
Sbjct: 305 IDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPND 364

Query: 226 VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY-VKVNTALIDMHAKCGRLDDAVSVFD 284
           VT L  L +CA LG+LDLGKW+H YI K   +     + T+LIDM+AKCG ++ A  VF 
Sbjct: 365 VTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFR 424

Query: 285 NMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM-KAQVSPDEITFLGLLYACSHTGLVD 343
           +M  ++  +W+AM+  +A HG   +++ +F EM+ K    PD+ITF+G+L AC+  GLVD
Sbjct: 425 SMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVD 484

Query: 344 EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
            G  YF SM   YGI P ++HYGCM+DLL RA + +EA   +  + ++    +W +LLS+
Sbjct: 485 LGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSA 544

Query: 404 CSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVP 463
           C +H  +   + V ER+F+L+  + G +V+LSN+ A AGRW+DV  +R  + D+G+ KVP
Sbjct: 545 CKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVP 604

Query: 464 GCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEK 523
           GC+SIE++  V EF  GD  H    ++ K L+E+ K L+  G+VP+TS V + DM++E K
Sbjct: 605 GCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTSEVLY-DMDEEWK 663

Query: 524 EIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           E AL  HSEKLAI+FGL+ T PGTTIR+VKNLRVC
Sbjct: 664 EGALSQHSEKLAISFGLIKTKPGTTIRIVKNLRVC 698



 Score =  234 bits (597), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 160/517 (30%), Positives = 277/517 (53%), Gaps = 64/517 (12%)

Query: 1   MATTPSPPI-----TQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNV 55
           + ++PSP I        PP K+    P  L+LL +C +    KQIH++ IKT L N + V
Sbjct: 4   VTSSPSPSILHFLPASDPPYKILEQHP-YLNLLEKCKNINTFKQIHSLIIKTGLNNTVFV 62

Query: 56  LTKLINFCTQNPTTSSMEHAHLLFDRIPEP---DIVLFNTMARGYSRSKTPIRAIFLFVE 112
            +KLI+FC  +P+   + +A  LF+   +    ++ ++N++ RGYS S +P+ ++ LF  
Sbjct: 63  QSKLIHFCAVSPS-GDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSR 121

Query: 113 LLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172
           +L  G+ P+ ++FP L K+C    A+A  EGKQLH  A+KL L+ N +V T++I++YA  
Sbjct: 122 MLYYGVQPNSHTFPFLFKSC--TKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASV 179

Query: 173 SDVEAARRIFEN----------------ISEPC---------------VVSYNAIITAYA 201
            +++ AR +F+                 +S+ C               VVS+NA+I+ Y 
Sbjct: 180 GEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYV 239

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           +S R  EA+  F E+QE N+ P   TM+  LS+C    S +LGKWI  +++  G    ++
Sbjct: 240 QSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQ 299

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           +  ALIDM+ KCG  D A  +FD +  KD  +W+ MI  Y+      +++ +FE M+++ 
Sbjct: 300 LTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSN 359

Query: 322 VSPDEITFLGLLYACSHTGLVDEG-WNYFY---SMRDKYGIVPGIKHYGCMVDLLGRAGR 377
           V P+++TFLG+L+AC+  G +D G W + Y   ++R+          +  ++D+  + G 
Sbjct: 360 VKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNS----SNASLWTSLIDMYAKCGC 415

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNN----LGLAKQVIER-IFELDDSHGGDYV 432
           ++ A R    +  ++    W  +LS  + H +    L L  +++ + +F  DD     +V
Sbjct: 416 IEAAERVFRSMHSRNLAS-WNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDI---TFV 471

Query: 433 ILSNLCARAGRWE-DVDYLRKLMKDRGV---LKVPGC 465
            + + C +AG  +    Y R +++D G+   L+  GC
Sbjct: 472 GVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGC 508


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/543 (39%), Positives = 327/543 (60%), Gaps = 12/543 (2%)

Query: 22  PNALS---LLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PN ++   LL  C +   L   K+IH+   K    +D+ V   LI+  ++     S++ A
Sbjct: 326 PNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSR---CGSIKDA 382

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
            L+FD++   D++ +  M  G ++S     A+ ++ E+  +G+ P+  ++ S+L AC+  
Sbjct: 383 RLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACS-- 440

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
              ALE G+++H   ++ GL ++ +V  TL+N+Y+ C  V+ AR++F+ + +  +V+YNA
Sbjct: 441 SPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNA 500

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +I  YA  +   EAL LF  LQE  LKP  VT ++ L++CA  GSL+  + IH  ++K G
Sbjct: 501 MIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGG 560

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
                 V  AL+  +AKCG   DA  VF+ M+ ++  +W+A+I   A HG+G  ++ +FE
Sbjct: 561 FFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFE 620

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
            M    V PD +TF+ LL ACSH GL++EG  YF SM   + I+P I+HYGCMVDLLGRA
Sbjct: 621 RMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRA 680

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
           G+LDEA   I  +P ++   +W  LL +C  H N+ +A++  E   +LD  +   YV LS
Sbjct: 681 GQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALS 740

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           ++ A AG W+    LRKLM+ RGV K PG S I+V + +  F + D  H  S  +   LD
Sbjct: 741 HMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRSHPQSEKIYAELD 800

Query: 496 ELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNL 555
            L   +KM GYVPDT  V H D+++ EKE A+ +HSE+LAI +GL++TPPGT I + KNL
Sbjct: 801 RLTHAMKMKGYVPDTRSVMH-DVDEGEKENAVCHHSERLAIAYGLISTPPGTRIHIFKNL 859

Query: 556 RVC 558
           RVC
Sbjct: 860 RVC 862



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 130/529 (24%), Positives = 243/529 (45%), Gaps = 40/529 (7%)

Query: 9   ITQSPPPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQ 65
           + Q     L  +    +S L  C S   L   ++IH   ++  L  D+ V   ++N   +
Sbjct: 114 LRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAK 173

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSF 125
                S+E A  +FD++ +  +V +     GY+       A  +F ++   G++P+  ++
Sbjct: 174 ---CGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITY 230

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
            S+L A +     AL+ GK +H   +  G  S+  V T L+ +YA+C   +  R++FE +
Sbjct: 231 ISVLNAFS--SPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKL 288

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245
               ++++N +I   A      EA  ++ ++Q   + P  +T +  L++C    +L  GK
Sbjct: 289 VNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGK 348

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
            IH  + K G    + V  ALI M+++CG + DA  VFD M  KD  +W+AMI   A  G
Sbjct: 349 EIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSG 408

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY 365
            G +++ +++EM +A V P+ +T+  +L ACS    ++ G    +    + G+       
Sbjct: 409 FGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWG-RRIHQQVVEAGLATDAHVG 467

Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
             +V++    G + +A +  D + I+   + +  ++   ++HN   L K+ + ++F+   
Sbjct: 468 NTLVNMYSMCGSVKDARQVFDRM-IQRDIVAYNAMIGGYAAHN---LGKEAL-KLFDRLQ 522

Query: 426 SHG-----GDYVILSNLCARAGRWEDVDYLRKLMKDRG-----------VLKVPGCSSIE 469
             G       Y+ + N CA +G  E    +  L++  G           V     C S  
Sbjct: 523 EEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFS 582

Query: 470 VNNVVREFFSGDGVHSYSTDL---------QKALDELVKELKMVGYVPD 509
             ++V E  +   V S++  +         Q AL +L + +KM G  PD
Sbjct: 583 DASIVFEKMTKRNVISWNAIIGGSAQHGRGQDAL-QLFERMKMEGVKPD 630



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 196/401 (48%), Gaps = 20/401 (4%)

Query: 19  TNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
            N+ + + +L RC   + L   +Q+H   I+     D   +  LIN   Q     S+E A
Sbjct: 21  VNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQ---CGSIEEA 77

Query: 76  HLLFDRIP--EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
             ++ ++   E  +  +N M  GY +     +A+ L  ++   GL PD  +  S L +C 
Sbjct: 78  RQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCK 137

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
             G  ALE G+++H  A++ GL  ++ V   ++N+YA+C  +E AR +F+ + +  VVS+
Sbjct: 138 SPG--ALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSW 195

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
              I  YA   R   A  +F+++++  + P  +T +S L++ +   +L  GK +H  I  
Sbjct: 196 TITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILN 255

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
            G +    V TAL+ M+AKCG   D   VF+ +  +D  AW+ MI   A  G   ++  +
Sbjct: 256 AGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEV 315

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           + +M +  V P++IT++ LL AC ++  +  G    +S   K G    I     ++ +  
Sbjct: 316 YNQMQREGVMPNKITYVILLNACVNSAALHWG-KEIHSRVAKAGFTSDIGVQNALISMYS 374

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAK 414
           R G + +A    D++ ++   I W  ++         GLAK
Sbjct: 375 RCGSIKDARLVFDKM-VRKDVISWTAMIG--------GLAK 406



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 124/227 (54%), Gaps = 4/227 (1%)

Query: 113 LLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172
           L   G   +   +  +LK C  +  + L  G+Q+H   I+     + Y    LIN+Y +C
Sbjct: 14  LQQQGAQVNSSDYMKMLKRC--IEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQC 71

Query: 173 SDVEAARRIFENIS--EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLS 230
             +E AR++++ +S  E  V S+NA++  Y +     +AL L R++Q+  L P   T++S
Sbjct: 72  GSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMS 131

Query: 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290
            LSSC   G+L+ G+ IH    + GL   VKV   +++M+AKCG +++A  VFD M  K 
Sbjct: 132 FLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKS 191

Query: 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
             +W+  I  YA  G+   +  +F++M +  V P+ IT++ +L A S
Sbjct: 192 VVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFS 238



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 102/190 (53%), Gaps = 9/190 (4%)

Query: 209 ALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL--DKYVKVNTAL 266
           A+ + + LQ++  +      +  L  C  +  L  G+ +H++I ++    D+Y  VN AL
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYT-VN-AL 64

Query: 267 IDMHAKCGRLDDAVSVFDNMS--GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
           I+M+ +CG +++A  V+  +S   +   +W+AM+V Y  +G   K++ +  +M +  ++P
Sbjct: 65  INMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAP 124

Query: 325 DEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
           D  T +  L +C   G ++ G   +F +M  + G++  +K   C++++  + G ++EA  
Sbjct: 125 DRTTIMSFLSSCKSPGALEWGREIHFQAM--QAGLLFDVKVANCILNMYAKCGSIEEARE 182

Query: 384 FIDELPIKST 393
             D++  KS 
Sbjct: 183 VFDKMEKKSV 192


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/567 (39%), Positives = 333/567 (58%), Gaps = 33/567 (5%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQN--------------- 66
           P  L    +  +F   +QIH   +K   + DL V T LI+   QN               
Sbjct: 70  PFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSH 129

Query: 67  -------------PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVEL 113
                         ++ ++  A  +FD IP  D+V +N M  GY+ + +   A+ LF E+
Sbjct: 130 RDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEM 189

Query: 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
           + + + PD+ +  ++L ACA   + ++E G+Q+H +    G  SNL +   LI+LY++C 
Sbjct: 190 MKTNVRPDEGTMVTVLSACA--QSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCG 247

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
            VE A  +FE +S   VVS+N +I  Y   +   EAL LF+E+      P DVT++S L 
Sbjct: 248 QVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILP 307

Query: 234 SCALLGSLDLGKWIHEYIKKYGLD--KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDT 291
           +CA LG++D+G+WIH YI K   D      + T+LIDM+AKCG ++ A  VF++M  K  
Sbjct: 308 ACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSL 367

Query: 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYS 351
            +W+AMI  +A HG+ +    +F  M K  + PD+ITF+GLL ACSH+G +D G + F S
Sbjct: 368 SSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKS 427

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
           M   Y I P ++HYGCM+DLLG +G   EA   I  +P++   ++W +LL +C  H NL 
Sbjct: 428 MTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLE 487

Query: 412 LAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVN 471
           LA+     + +++  + G YV+LSN+ A AG W++V  +R L+  +G+ KVPGCSSIE++
Sbjct: 488 LAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEID 547

Query: 472 NVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHS 531
           + V EF  GD +H  + ++   L+E+   L+  G+VPDTS V   +ME+E KE ALR+HS
Sbjct: 548 SEVHEFIVGDKLHPRNREIYGMLEEMEALLEEAGFVPDTSEVLQ-EMEEEWKEGALRHHS 606

Query: 532 EKLAITFGLLNTPPGTTIRVVKNLRVC 558
           EKLAI FGL++T PGT + +VKNLRVC
Sbjct: 607 EKLAIAFGLISTKPGTKLTIVKNLRVC 633



 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 135/435 (31%), Positives = 240/435 (55%), Gaps = 45/435 (10%)

Query: 57  TKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS 116
           +KL+ FC  +P      +A  +F  I EP+ +++NTM RGY+ S  P+ A+ L+V +++ 
Sbjct: 1   SKLLEFCVLSPHFDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISL 60

Query: 117 GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVE 176
           GLLP+ Y+FP LLK+CA   ++A EEG+Q+H   +KLG   +LYV T+LI++YA+   +E
Sbjct: 61  GLLPNSYTFPFLLKSCA--KSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLE 118

Query: 177 AARRIFENISEPCVVSYNAIITAYA-----RSSRP------------------------- 206
            A ++F+  S   VVSY A+IT YA     RS++                          
Sbjct: 119 DAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGS 178

Query: 207 -NEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTA 265
             EAL LF+E+ + N++P + TM++ LS+CA   S++LG+ +H +I  +G    +K+  A
Sbjct: 179 YKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNA 238

Query: 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
           LID+++KCG+++ A  +F+ +S KD  +W+ +I  Y       +++L+F+EM+++  SP+
Sbjct: 239 LIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPN 298

Query: 326 EITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF 384
           ++T + +L AC+H G +D G W + Y  +    +         ++D+  + G ++ A++ 
Sbjct: 299 DVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQV 358

Query: 385 IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI----FELDDSHGGDYVILSNLCAR 440
            + +  KS    W  ++   + H        +  R+     E DD     +V L + C+ 
Sbjct: 359 FNSMLHKSLSS-WNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDI---TFVGLLSACSH 414

Query: 441 AGRWEDVDYLRKLMK 455
           +G+   +D  R + K
Sbjct: 415 SGK---LDLGRHIFK 426


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/567 (38%), Positives = 332/567 (58%), Gaps = 33/567 (5%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQN--------------- 66
           P  L    +  +F+  +QIH   +K     DL V T LI+   QN               
Sbjct: 138 PFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPH 197

Query: 67  -------------PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVEL 113
                         +   +E A  LFD IP  D+V +N M  GY+ +     A+ LF E+
Sbjct: 198 RDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEM 257

Query: 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
           + + + PD+ +  +++ ACA  G+  +E G+Q+H +    G  SNL +  +L++LY++C 
Sbjct: 258 MKTNIRPDESTMVTVVSACAQSGS--IELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCG 315

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
           ++E A  +FE +    V+S+N +I  Y   +   EAL LF+E+     +P DVTMLS L 
Sbjct: 316 ELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILP 375

Query: 234 SCALLGSLDLGKWIHEYIKKY--GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDT 291
           +CA LG++D+G+WIH YI K          + T+LIDM+AKCG ++ A  VF+++  K  
Sbjct: 376 ACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSL 435

Query: 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYS 351
            +W+AMI  +A HG+   +  +F  M K  + PD+ITF+GLL ACS +G++D G + F +
Sbjct: 436 SSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRT 495

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
           M   Y I P ++HYGCM+DLLG +G   EA   I+ + ++   ++W +LL +C    N+ 
Sbjct: 496 MTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVE 555

Query: 412 LAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVN 471
           L +   + + +++  + G YV+LSN+ A AGRW +V  +R L+ D+G+ KVPGCSSIE++
Sbjct: 556 LGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEID 615

Query: 472 NVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHS 531
           +VV EF  GD  H  + ++   L+E+   L+  G+VPDTS V   +ME+E KE ALR+HS
Sbjct: 616 SVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQ-EMEEEWKEGALRHHS 674

Query: 532 EKLAITFGLLNTPPGTTIRVVKNLRVC 558
           EKLAI FGL++T PGT + +VKNLRVC
Sbjct: 675 EKLAIAFGLISTKPGTKLTIVKNLRVC 701



 Score =  254 bits (650), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 145/471 (30%), Positives = 259/471 (54%), Gaps = 43/471 (9%)

Query: 8   PITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNP 67
           P +  PP     N P +LSLL  C + + L+ IHA  IKT L N    L+KL+  C  +P
Sbjct: 21  PSSSDPPYDSLRNHP-SLSLLHNCKTLQSLRLIHAQMIKTGLHNTNYALSKLLELCVISP 79

Query: 68  TTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPS 127
               + +A  +F+ I EP+++++NTM RG++ S  P+ A+ L+V +++ GLLP+ Y+FP 
Sbjct: 80  HFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPF 139

Query: 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRI------ 181
           LLK+CA   ++A +EG+Q+H   +KLG + +L+V T+LI++Y +   +E AR++      
Sbjct: 140 LLKSCA--KSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPH 197

Query: 182 -------------------------FENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
                                    F+ I    VVS+NA+I+ YA +    EAL LF+E+
Sbjct: 198 RDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEM 257

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
            + N++P + TM++ +S+CA  GS++LG+ +H +I  +G    +K+  +L+D+++KCG L
Sbjct: 258 MKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGEL 317

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           + A  +F+ +  KD  +W+ +I  Y       +++L+F+EM+++   P+++T L +L AC
Sbjct: 318 ETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPAC 377

Query: 337 SHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
           +H G +D G W + Y  +              ++D+  + G ++ A++  + +  KS   
Sbjct: 378 AHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS 437

Query: 396 LWRTLLSSCSSHNNLGLAKQVIERI----FELDDSHGGDYVILSNLCARAG 442
            W  ++   + H     A  +  R+     E DD     +V L + C+R+G
Sbjct: 438 -WNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDI---TFVGLLSACSRSG 484


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/567 (38%), Positives = 334/567 (58%), Gaps = 33/567 (5%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQN--------------- 66
           P  L    +  +F+  +QIH   +K     DL V T LI+   QN               
Sbjct: 138 PFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPH 197

Query: 67  -------------PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVEL 113
                         +   +E+A  LFD IP  D+V +N M  GY+ +     A+ LF ++
Sbjct: 198 RDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM 257

Query: 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
           + + + PD+ +  +++ ACA  G+  +E G+Q+H +    G  SNL +   LI+LY++C 
Sbjct: 258 MKTNVRPDESTMVTVVSACAQSGS--IELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCG 315

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
           ++E A  +FE +    V+S+N +I  Y   +   EAL LF+E+      P DVTMLS L 
Sbjct: 316 ELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 375

Query: 234 SCALLGSLDLGKWIHEYIKKY--GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDT 291
           +CA LG++D+G+WIH YI K   G+     + T+LIDM+AKCG ++ A  VF+++  K  
Sbjct: 376 ACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSL 435

Query: 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYS 351
            +W+AMI  +A HG+   S  +F  M K  + PD+ITF+GLL ACSH+G++D G + F +
Sbjct: 436 SSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRT 495

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
           M   Y + P ++HYGCM+DLLG +G   EA   I+ + ++   ++W +LL +C  H N+ 
Sbjct: 496 MTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVE 555

Query: 412 LAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVN 471
           L +   E + +++  + G YV+LSN+ A AGRW +V   R L+ D+G+ KVPGCSSIE++
Sbjct: 556 LGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEID 615

Query: 472 NVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHS 531
           +VV EF  GD  H  + ++   L+E+   L+  G+VPDTS V   +ME+E KE ALR+HS
Sbjct: 616 SVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQ-EMEEEWKEGALRHHS 674

Query: 532 EKLAITFGLLNTPPGTTIRVVKNLRVC 558
           EKLAI FGL++T PGT + +VKNLRVC
Sbjct: 675 EKLAIAFGLISTKPGTKLTIVKNLRVC 701



 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 144/471 (30%), Positives = 261/471 (55%), Gaps = 43/471 (9%)

Query: 8   PITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNP 67
           P +  PP     N P +LSLL  C + + L+ IHA  IK  L N    L+KLI FC  +P
Sbjct: 21  PSSSDPPYDSIRNHP-SLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSP 79

Query: 68  TTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPS 127
               + +A  +F  I EP+++++NTM RG++ S  P+ A+ L+V +++ GLLP+ Y+FP 
Sbjct: 80  HFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPF 139

Query: 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD------------- 174
           +LK+CA   ++A +EG+Q+H   +KLG + +LYV T+LI++Y +                
Sbjct: 140 VLKSCA--KSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPH 197

Query: 175 ------------------VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
                             +E A+++F+ I    VVS+NA+I+ YA +    EAL LF+++
Sbjct: 198 RDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM 257

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
            + N++P + TM++ +S+CA  GS++LG+ +H +I  +G    +K+  ALID+++KCG L
Sbjct: 258 MKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEL 317

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           + A  +F+ +  KD  +W+ +I  Y       +++L+F+EM+++  +P+++T L +L AC
Sbjct: 318 ETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPAC 377

Query: 337 SHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
           +H G +D G W + Y  +   G+         ++D+  + G ++ A++  + +  KS   
Sbjct: 378 AHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS 437

Query: 396 LWRTLLSSCSSHNNLGLAKQVIERIFEL----DDSHGGDYVILSNLCARAG 442
            W  ++   + H     +  +  R+ ++    DD     +V L + C+ +G
Sbjct: 438 -WNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDI---TFVGLLSACSHSG 484


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/477 (41%), Positives = 303/477 (63%), Gaps = 34/477 (7%)

Query: 113 LLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172
           ++  G+ P+ ++  +++KACA + +  LE+GKQ H + IK+G  S++ V T L+++YA C
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIAS--LEQGKQAHNYIIKMGFESDVVVQTALVHMYARC 58

Query: 173 SDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN------------ 220
             +E A  +F+ +SE    ++NA+IT +A++    +AL LF E+ ER+            
Sbjct: 59  GSLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYA 118

Query: 221 -------------------LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
                              +K     M S LS+CA L +L+LG+  H Y+ + G    + 
Sbjct: 119 QNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIV 178

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V +AL+DM+AK G ++DA  VFD M  ++  +W+++I   A HG+G+ ++L+FE+M++A 
Sbjct: 179 VGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAG 238

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           + P+EI+F+G+L ACSHTGLV+EG  YF  M   YGIVP + HY CM+DLLGRAG LDEA
Sbjct: 239 IKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEA 298

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
             FI+ +P++    +W  LL +C  H N  LAK++ E +  ++    G YV+LSN+ A A
Sbjct: 299 ENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAA 358

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           G+W+D   +RKLMKDRGV+K PG S IEV  ++  F +G+  H    ++ + L+ L +++
Sbjct: 359 GQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKM 418

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K  GYVP+ + V   D+ED+EKE++L +HSEKLAI FG++NT PGTTIRV KNLRVC
Sbjct: 419 KAAGYVPNKNFVLQ-DVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRVC 474



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 181/374 (48%), Gaps = 47/374 (12%)

Query: 22  PNALSL---LPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PN  +L   +  C S   L   KQ H   IK   ++D+ V T L++   +     S+E A
Sbjct: 8   PNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYAR---CGSLEDA 64

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVEL---------------------- 113
             +FD++ E     +N M  G+++++   +A+ LF E+                      
Sbjct: 65  GHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGD 124

Query: 114 --LN-------SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTT 164
             LN       +G+  D +   S+L ACA + A  LE G+Q H + ++ G   ++ V + 
Sbjct: 125 ESLNVFNQMRKTGMKSDRFIMGSVLSACADLAA--LELGRQFHAYVVQSGFALDIVVGSA 182

Query: 165 LINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT 224
           L+++YA+   +E A ++F+ + +   VS+N+IIT  A+  R N+A+ LF ++ +  +KP 
Sbjct: 183 LVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPN 242

Query: 225 DVTMLSALSSCALLGSLDLGK-WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVF 283
           +++ +  LS+C+  G ++ G+ + +   + YG+   V   T +ID+  + G LD+A +  
Sbjct: 243 EISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFI 302

Query: 284 DNMSGK-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI-TFLGLLYACSHTGL 341
           + M  + D   W A++ A   HG    +  + E ++  +V    I   L  +YA +  G 
Sbjct: 303 NGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAA--GQ 360

Query: 342 VDEGWNYFYSMRDK 355
            D+       M+D+
Sbjct: 361 WDDAAKVRKLMKDR 374


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/565 (38%), Positives = 347/565 (61%), Gaps = 16/565 (2%)

Query: 3   TTPSP---PITQSPPPKLCT-NTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTK 58
           + PSP   P + S P  L + +    +SLL R      +  IHA  I+     D  ++ +
Sbjct: 10  SGPSPKPHPNSNSNPKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFE 69

Query: 59  LINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118
           L+  C++     ++++A  +F     P++ L+  +  G+  S     AI L+  +L+  +
Sbjct: 70  LLRSCSK---CHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSI 126

Query: 119 LPDDYSFPSLLKACACVGAE-ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEA 177
           LPD+Y   S+LKAC   G++ AL EG+++H  A+KLGL+SN  V   ++ LY +C ++  
Sbjct: 127 LPDNYLMASILKAC---GSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGD 183

Query: 178 ARRIFENISEPCV----VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
           ARR+FE + E  V    V + A+I  + R+   N AL  FR +Q  N++P + T++  LS
Sbjct: 184 ARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLS 243

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
           +C+ LG+L++G+W+H Y++K+ ++  + V  ALI+M+++CG +D+A +VFD M  +D   
Sbjct: 244 ACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVIT 303

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           ++ MI   + +G+  ++I +F  M+  ++ P  +TF+G+L ACSH GLVD G+  F+SM 
Sbjct: 304 YNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMT 363

Query: 354 DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413
             YG+ P I+HYGCMVDLLGR GRL+EAY  I  + +    I+  TLLS+C  H NL L 
Sbjct: 364 RDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELG 423

Query: 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNV 473
           +QV + + +   +  G YV+LS++ A +G+W++   +R  MK+ G+ K PGCSSIEVNN 
Sbjct: 424 EQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNE 483

Query: 474 VREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEK 533
           + EF  GD  H     + + L+EL + L++ GY P+  +V   D+ED EKE AL  HSE+
Sbjct: 484 IHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQ-DIEDGEKEWALAIHSER 542

Query: 534 LAITFGLLNTPPGTTIRVVKNLRVC 558
           LAI +GL++T P T IRV+KNLRVC
Sbjct: 543 LAICYGLISTEPCTVIRVMKNLRVC 567


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/558 (38%), Positives = 328/558 (58%), Gaps = 7/558 (1%)

Query: 2   ATTPSPPITQSPPPK-LCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLI 60
           +  P+P   +S     L  +T    S L  C +   ++Q+HA         +L V  KL+
Sbjct: 33  SNEPTPCSQESECSHVLHYDTKRFRSSLLSCRNLFQVRQVHAQIATNGAFRNLAVANKLL 92

Query: 61  NFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP 120
               +     ++E A  LFD + +     ++ +  GY++        ++F ELL SG   
Sbjct: 93  YMYVER---GALEDAQELFDGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPL 149

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           DDYS P +++AC     + L+ G+ +HC  +K GL+   +VC TL+++YA C  VE A +
Sbjct: 150 DDYSAPVVIRACR--DLKDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQ 207

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
           IF  + +  + ++  +I A A S  P E+L  F  ++ + + P  V +++ + +CA LG+
Sbjct: 208 IFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGA 267

Query: 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVA 300
           ++  K IH YI   G    V + TA+IDM+AKCG ++ A  +FD M  ++   WSAMI A
Sbjct: 268 MNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAA 327

Query: 301 YATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP 360
           Y  HGQG K++ +F  M+++ + P+ ITF+ LLYACSH GL++EG  +F SM D+YG+ P
Sbjct: 328 YGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTP 387

Query: 361 GIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
            +KHY CMVDLLGRAGRLDEA   I+ +P++   +LW  LL +C  H +L LA++V   +
Sbjct: 388 DVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSL 447

Query: 421 FELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSG 480
            +L     G YV+LSN+ A AG+WED+   R LM   G+ K+PG + IEV   + +F  G
Sbjct: 448 LKLQSQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLRKIPGRTWIEVGEKLYQFGVG 507

Query: 481 DGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGL 540
           D  H  S ++ K L  L ++L++ GY PDT+ V + D+++E K+  L  HSEKLAI FGL
Sbjct: 508 DKTHPRSNEIYKMLKRLGEKLEVAGYHPDTNDVLY-DVDEEVKQGLLYSHSEKLAIAFGL 566

Query: 541 LNTPPGTTIRVVKNLRVC 558
           L  P G  IR+ KNLRVC
Sbjct: 567 LVLPQGHPIRITKNLRVC 584


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/538 (37%), Positives = 336/538 (62%), Gaps = 13/538 (2%)

Query: 26  SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  CT    L+    +H   ++  +  DL     L+N  ++     S+     +F+ +
Sbjct: 110 SVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRK---VFELM 166

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE- 141
           P  D+V +NT+  GY++S     A+ +  E+  S L PD ++  S+L     + +E ++ 
Sbjct: 167 PRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLP----IFSEYVDV 222

Query: 142 -EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY 200
            +GK++H + I+ G++S++Y+ ++L+++YA+ + +E + R+F ++     +S+N+++  Y
Sbjct: 223 LKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGY 282

Query: 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
            ++ R NEAL LFR++    ++P  V   S + +CA L +L LGK +H Y+ + G  + +
Sbjct: 283 VQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNI 342

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            + +AL+DM++KCG +  A  +FD M+  D  +W+A+I+ +A HG GH+++ +FEEM + 
Sbjct: 343 FIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQ 402

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
            V P+++ F+ +L ACSH GLVDE W YF SM   YG+   ++HY  + DLLGRAG+L+E
Sbjct: 403 GVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEE 462

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           AY FI ++ ++ T  +W TLLSSCS H NL LA++V E+IF +D  + G YV++ N+ A 
Sbjct: 463 AYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYAS 522

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
            GRW+++  LR  ++ +G+ K P CS IE+ N    F SGD  H     + + L  ++++
Sbjct: 523 NGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDRINEFLKAVMEQ 582

Query: 501 LKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           ++  GYV DTS V H D+++E K   L  HSE+LA+ FG++NT PGTTIRV KN+R+C
Sbjct: 583 MEKEGYVADTSGVLH-DVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRIC 639



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 203/381 (53%), Gaps = 10/381 (2%)

Query: 30  RCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVL 89
           R  S    KQ+HA  I+T   +  +  + +I+  T       +  A L+F  +  P ++ 
Sbjct: 17  RIKSKSQAKQLHAQFIRTQSLSHTSA-SIVISIYTN---LKLLHEALLVFKTLESPPVLA 72

Query: 90  FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCF 149
           + ++ R ++      RA+  FVE+  SG  PD   FPS+LK+C  +    L  G+ +H F
Sbjct: 73  WKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMM--MDLRFGESVHGF 130

Query: 150 AIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEA 209
            ++LG++ +LY    L+N+Y++   +++ R++FE +    VVSYN +I  YA+S    +A
Sbjct: 131 IVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDA 190

Query: 210 LSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDM 269
           L + RE+   +LKP   T+ S L   +    +  GK IH Y+ + G+D  V + ++L+DM
Sbjct: 191 LRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDM 250

Query: 270 HAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITF 329
           +AK  R++D+  VF ++  +D+ +W++++  Y  +G+ ++++ +F +M+ A+V P  + F
Sbjct: 251 YAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAF 310

Query: 330 LGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388
             ++ AC+H   +  G   + Y +R  +G    I     +VD+  + G +  A +  D +
Sbjct: 311 SSVIPACAHLATLHLGKQLHGYVLRGGFG--RNIFIASALVDMYSKCGNIQAARKIFDRM 368

Query: 389 PIKSTPILWRTLLSSCSSHNN 409
            +    + W  ++   + H +
Sbjct: 369 NLHD-EVSWTAIIMGHALHGH 388


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/598 (37%), Positives = 335/598 (56%), Gaps = 49/598 (8%)

Query: 4   TPSPP-----ITQSPPPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNV 55
           TP+P       +Q     L  N+    SL   C   +     KQ+HA  +K  L    +V
Sbjct: 105 TPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHV 164

Query: 56  LTKLINFCTQNPTTSSMEHAHL-------------------------------LFDRIPE 84
            T LI+  +Q      + HA L                               LFD IP 
Sbjct: 165 HTSLIHMYSQ---VGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPA 221

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
            D+V +N M  GY +S     A+  F  +  + + P+  +  S+L AC  +   +LE GK
Sbjct: 222 KDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHL--RSLELGK 279

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
            +  +    G   NL +   L+++Y++C ++  AR++F+ + +  V+ +N +I  Y   S
Sbjct: 280 WIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLS 339

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK----YGLDKYV 260
              EAL LF  +   N+ P DVT L+ L +CA LG+LDLGKW+H YI K     G    V
Sbjct: 340 LYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNV 399

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            + T++I M+AKCG ++ A  VF +M  +   +W+AMI   A +G   +++ +FEEM+  
Sbjct: 400 SLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINE 459

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
              PD+ITF+G+L AC+  G V+ G  YF SM   YGI P ++HYGCM+DLL R+G+ DE
Sbjct: 460 GFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDE 519

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           A   +  + ++    +W +LL++C  H  +   + V ER+FEL+  + G YV+LSN+ A 
Sbjct: 520 AKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAG 579

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
           AGRW+DV  +R  + D+G+ KVPGC+SIE++ VV EF  GD  H  S ++ + LDE+ + 
Sbjct: 580 AGRWDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRL 639

Query: 501 LKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           L+  G+VPDTS V + DM++E KE AL  HSEKLAI FGL++T PG+TIR+VKNLRVC
Sbjct: 640 LEETGFVPDTSEVLY-DMDEEWKEGALTQHSEKLAIAFGLISTKPGSTIRIVKNLRVC 696



 Score =  261 bits (667), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 168/514 (32%), Positives = 277/514 (53%), Gaps = 57/514 (11%)

Query: 1   MATTPSPPI-----TQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNV 55
           M +  SPP      +  PP KL  N P+ L+LL +C     LKQIH++ IK+ L N L  
Sbjct: 1   MVSCLSPPFVHFLPSSDPPYKLLENHPH-LNLLAKCPDIPSLKQIHSLIIKSGLHNTLFA 59

Query: 56  LTKLINFCTQNPTTSSMEHAHLLFDRIPE--PDIVLFNTMARGYSRSKTPIRAIFLFVEL 113
            +KLI FC  +P+   + +A  LF  I    P+I ++NT+ R +S + TP  ++ LF ++
Sbjct: 60  QSKLIEFCALSPS-RDLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQM 118

Query: 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
           L+SGL P+ ++FPSL K+CA   ++A  E KQLH  A+KL L+ + +V T+LI++Y++  
Sbjct: 119 LHSGLYPNSHTFPSLFKSCA--KSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVG 176

Query: 174 D-------------------------------VEAARRIFENISEPCVVSYNAIITAYAR 202
           +                               V+ ARR+F+ I    VVS+NA+I  Y +
Sbjct: 177 ELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQ 236

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
           S R  EAL+ F  +QE ++ P   TM+S LS+C  L SL+LGKWI  +++  G  K +++
Sbjct: 237 SGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQL 296

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
             AL+DM++KCG +  A  +FD M  KD   W+ MI  Y       +++++FE M++  V
Sbjct: 297 VNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENV 356

Query: 323 SPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGI--VPGIKHYGCMVDLLGRAGRLD 379
           +P+++TFL +L AC+  G +D G W + Y  ++  G   V  +  +  ++ +  + G ++
Sbjct: 357 TPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVE 416

Query: 380 EAYRFIDELPIKSTPILWRTLLSSCSSHNN----LGLAKQVIERIFELDDSHGGDYVILS 435
            A +    +  +S    W  ++S  + + +    LGL +++I   F+ DD     +V + 
Sbjct: 417 VAEQVFRSMGSRSLAS-WNAMISGLAMNGHAERALGLFEEMINEGFQPDDI---TFVGVL 472

Query: 436 NLCARAGRWE-DVDYLRKLMKDRGV---LKVPGC 465
           + C +AG  E    Y   + KD G+   L+  GC
Sbjct: 473 SACTQAGFVELGHRYFSSMNKDYGISPKLQHYGC 506


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/595 (37%), Positives = 341/595 (57%), Gaps = 75/595 (12%)

Query: 32  TSFRGLKQIHAVTIKT-HLQNDLNVLTKLINFCTQNPTTS--SMEHAHLLFDRIPEPDIV 88
           TS   LKQ HA+ ++T HLQ D  +   L+       T    S E +  +FD + +P++ 
Sbjct: 45  TSLHHLKQAHALILRTGHLQ-DSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVF 103

Query: 89  LFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHC 148
           L+N M +    +  P +AI L+ E++ +   P+ Y++P++LKAC+  G  A  EG Q+H 
Sbjct: 104 LWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVA--EGVQVHA 161

Query: 149 FAIKLGLNSNLYVCTTLINLYA--------------------------------ECSDVE 176
             +K GL  + ++ ++ I +YA                                   +VE
Sbjct: 162 HLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVE 221

Query: 177 AARRIFENISEPCVVS-YNAIITAYARSSRPN---------------------------- 207
           AAR +FE + +  ++S +NA+I+ ++R                                 
Sbjct: 222 AARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEG 281

Query: 208 ---EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
              EAL +F ++Q+  ++P    + S LS+CA LG+LD G+WIH Y K+  +     + T
Sbjct: 282 CFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGT 341

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
           +L+DM+AKCGR+D A  VF+ MS K+  +W+AMI   A HG+   +I +F +M    ++P
Sbjct: 342 SLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINP 398

Query: 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF 384
           +EITF+G+L AC+H GLV +G   F SMR +YG+ P I+HYGC+VDLLGRAG L EA + 
Sbjct: 399 NEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKV 458

Query: 385 IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444
           +  +P + TP +W  LL +C  H N+ L ++V + + EL+  + G Y +LSN+ A+AGRW
Sbjct: 459 VSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRW 518

Query: 445 EDVDYLRKLMKDRGVLKVPGCSSIEVN-NVVREFFSGDGVHSYSTDLQKALDELVKELKM 503
           E+V  +RKLMK+RG+   PG S I++    V +F  GDG H    D+ + LD++ + L+M
Sbjct: 519 EEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQM 578

Query: 504 VGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            GY PD S V   D+++EEKE A+  HSEKLAI FGL+NT PGTTIR+VKNLRVC
Sbjct: 579 EGYEPDPSQVLF-DIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVC 632


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/573 (38%), Positives = 337/573 (58%), Gaps = 39/573 (6%)

Query: 22  PNALS---LLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQN--------- 66
           PN+ +   LL  C   +  K   QIH   +K   + DL V T LI+   +N         
Sbjct: 101 PNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKV 160

Query: 67  -------------------PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAI 107
                               +   +E A  +FD IP  D+V +N +  GY+ +     A+
Sbjct: 161 FDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEAL 220

Query: 108 FLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLIN 167
            LF E++ + + PD+ +  +++ ACA  G+  ++ G+Q+H +    GL SNL +   LI+
Sbjct: 221 DLFKEMMKTNVKPDESTMVTVVSACAQSGS--IQLGRQVHSWIDDHGLGSNLKIVNALID 278

Query: 168 LYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT 227
           LY++C +VE A  +F+ +S   V+S+N +I  Y   +   EAL LF+E+      P DVT
Sbjct: 279 LYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVT 338

Query: 228 MLSALSSCALLGSLDLGKWIHEYIKKY--GLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285
           MLS L +CA LG++D G+WIH YI K   G+     + T+LIDM+AKCG ++ A  VF++
Sbjct: 339 MLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNS 398

Query: 286 MSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
           M  +   A +AMI  +A HG+ + +  +F  M K  + PD+ITF+GLL ACSH+G++D G
Sbjct: 399 MHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLG 458

Query: 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS 405
              F SM   Y I P ++HYGCM+DLLG  G   EA   I+ + ++   ++W +LL +C 
Sbjct: 459 RRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACK 518

Query: 406 SHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGC 465
            H N+ L +   +++ +++  + G YV+LSN+ A AGRW +V  +R L+ D+G+ KVPGC
Sbjct: 519 MHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGC 578

Query: 466 SSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEI 525
           SSIE+++VV EF  GD  H  + ++   L+E+   L+  G+VPDTS V   +ME+E K+ 
Sbjct: 579 SSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQ-EMEEEFKQG 637

Query: 526 ALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           ALR+HSEKLAI FGL++T PGT + +VKNLRVC
Sbjct: 638 ALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVC 670



 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 135/401 (33%), Positives = 234/401 (58%), Gaps = 35/401 (8%)

Query: 20  NTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLF 79
           N P +LSLL  C + + L+ IHA  IKT L N    L++L+ FC  +P    + +A  +F
Sbjct: 2   NHP-SLSLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVF 60

Query: 80  DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEA 139
           + I EP+++++NTM RG++ S  P+ AI L+V +++ GLLP+ Y+FP LLK+CA +  + 
Sbjct: 61  ETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKL--KV 118

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINL------------------------------- 168
            +EG+Q+H   +KLG   +LYV T+LI++                               
Sbjct: 119 SKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITG 178

Query: 169 YAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTM 228
           YA    +E+A+++F+ I    VVS+NAII+ YA +    EAL LF+E+ + N+KP + TM
Sbjct: 179 YASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTM 238

Query: 229 LSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG 288
           ++ +S+CA  GS+ LG+ +H +I  +GL   +K+  ALID+++KCG ++ A  +F  +S 
Sbjct: 239 VTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSN 298

Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WN 347
           KD  +W+ MI  Y       +++L+F+EM+++  +P+++T L +L AC+  G +D G W 
Sbjct: 299 KDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWI 358

Query: 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388
           + Y  +   G+         ++D+  + G ++ A++  + +
Sbjct: 359 HVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM 399


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/600 (36%), Positives = 336/600 (56%), Gaps = 54/600 (9%)

Query: 2   ATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLIN 61
           A  PSP  T+ P          A +LL  C S     +IHA  ++  +  D     K + 
Sbjct: 5   AVLPSPASTRHPAGGGALTADRAAALLAGCASASRAAEIHAAAVRASVDQD-----KAVA 59

Query: 62  FCTQNPTTSS--MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS--G 117
           F  Q    +S  ++ A  L  R P+P  V + +    +S       A+ L  E+L S  G
Sbjct: 60  FRLQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHRAALALLSEMLLSRHG 119

Query: 118 LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLY-------- 169
           LLP  ++  + L AC C     L  G+ LH +A+KL L+   YV T L+ +Y        
Sbjct: 120 LLPTAHTLSASLPACGC-----LAVGRALHGYAVKLALSGEPYVATALLGMYARAGEAAA 174

Query: 170 ------------------------AECSDVEAARRIFENISEPCVVSYNAIITAYARSSR 205
                                   A+   ++ AR +F+ +    +V +NA++  Y +  R
Sbjct: 175 ARALFDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGR 234

Query: 206 PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN-- 263
           P+EAL LFR++    ++P +V+++ ALS+ A LG+ + G+W+H ++   G    V++N  
Sbjct: 235 PSEALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNAR 294

Query: 264 --TALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
             TAL+DM+ KCG L++AV+VF ++ G   +D  AW+AMI  YA HG+  +++  F ++ 
Sbjct: 295 VGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLR 354

Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
              + P +ITF+G+L ACSH+GLVDEG   F +M ++YGIVP ++HYGCMVDLLGRAGR+
Sbjct: 355 AQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRV 414

Query: 379 DEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438
           +EA+  +  +  K    +W +LL +C  H NL L ++V + +     ++ G YV+LSN+ 
Sbjct: 415 EEAFDLVQSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVGNGLANSGTYVLLSNMY 474

Query: 439 ARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELV 498
           A AG+W +V  +R +M+  GV K PGCS++EV   V EF +GD  H  S ++   L+E+ 
Sbjct: 475 AAAGKWREVGRVRSMMRASGVQKEPGCSAVEVGRRVVEFVAGDRSHPRSAEIYAKLEEVN 534

Query: 499 KELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
              +  G+VP T LV H D++D  KE AL  HSEKLA+ FGL++TPP T I++VKNLR C
Sbjct: 535 SIARARGHVPHTELVLH-DLDDAAKERALAVHSEKLALAFGLISTPPRTGIKIVKNLRAC 593


>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
 gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
          Length = 607

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/562 (39%), Positives = 342/562 (60%), Gaps = 13/562 (2%)

Query: 5   PSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCT 64
           P+ P    PP        + L LL R ++   + Q  A  +K+ L  +  VLT+L     
Sbjct: 11  PTAPAWCHPPSAARAAEQHCLHLLERSSAPAAVLQSLAFLLKSGLHANPLVLTRLFASSA 70

Query: 65  QNPTTSSMEH-AHLLFDRIPEPDIVLFNTMARGYSRSKTP---IRAIFLFVELLNSGLLP 120
                      A LL   +P  D  L NT+ R ++ S  P   +RA   F  +L S +LP
Sbjct: 71  AAAPALLEPLVAALLRPSVP-IDAFLVNTLIRAHAASPLPSARLRAAAFFPLMLRSAVLP 129

Query: 121 DDYSFPSLLKACACV-GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVE--- 176
           + ++FP LLKACA + G   +  G Q H  A+K G  ++ YV  TLI++Y+ C   E   
Sbjct: 130 NKFTFPFLLKACAALPGFPGV--GLQAHAAALKFGFATDQYVSNTLIHMYS-CFGGEFLG 186

Query: 177 AARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236
            AR +F+ + +  VV+++A+I  Y R    ++A+ LFRE+Q   ++P +VT++  L++ A
Sbjct: 187 DARNVFDRMDKSSVVTWSAMIGGYVRGGLSSDAVGLFREMQASGVRPDEVTVIGVLAAAA 246

Query: 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSA 296
            LG+L+L +W+  ++++ G+ K V +  ALID  AKCG +D AV+VF  M  +   +W++
Sbjct: 247 DLGALELARWVGRFVEREGIGKSVTLCNALIDALAKCGDVDGAVAVFQGMEERTVVSWTS 306

Query: 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKY 356
           +I A A  G+G +++ +FE M  A V PD++ F+G+L ACSH G+VDEG+ YF SM+ +Y
Sbjct: 307 VIDALAMEGRGKEAVAVFEAMKTAGVRPDDVVFIGVLTACSHAGMVDEGYGYFDSMKMEY 366

Query: 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQV 416
           GI P I+HYGCMVD+ GRAG ++ A  FI  +P+K  PI+WRTL+++C +H  L L + +
Sbjct: 367 GIDPKIEHYGCMVDMFGRAGMVERAMEFIHTMPMKPNPIIWRTLVAACRAHGRLELGESI 426

Query: 417 IERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVRE 476
              +     +H  +YV+LSN+ A   RW++   +R+ M  RG+ KVPGCS +E++  V E
Sbjct: 427 TRNLLNEYPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHE 486

Query: 477 FFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAI 536
           F +GD  H    ++   ++E+ +ELK VG++  TS V   D+++E+KE AL++HSEKLAI
Sbjct: 487 FIAGDESHPQWKEIYMMVEEMARELKHVGHISATSEVLL-DLDEEDKEGALQWHSEKLAI 545

Query: 537 TFGLLNTPPGTTIRVVKNLRVC 558
            F LL TPPGT +RVVKNLRVC
Sbjct: 546 AFVLLRTPPGTQVRVVKNLRVC 567


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/520 (40%), Positives = 318/520 (61%), Gaps = 7/520 (1%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           +H+   K  L    +VLT LI+  ++      +E A  LFD + +PD+V +N +  GYS 
Sbjct: 234 VHSFAEKCGLAEHEHVLTGLISLYSK---CGDVESARCLFDMMEKPDLVAYNALISGYSV 290

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
           +     ++ LF EL+  GL P+  +  +L+   +  G + L   + LH F +K G  +N 
Sbjct: 291 NGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLL--AQCLHGFVLKSGFTANS 348

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
            V T +  L+   +D+E+AR+ F+ + E  + S+NA+I+ YA++     A++LF ++ + 
Sbjct: 349 PVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKL 408

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
           N++P  +T+ S LS+CA LG+L LGKW+H  I +  L+  V V TALIDM+AKCG + +A
Sbjct: 409 NVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEA 468

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
             +F+ M  K+  +W+AMI  Y  HGQG +++ ++++M+ A + P   TFL +LYACSH 
Sbjct: 469 RRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHG 528

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST-PILWR 398
           GLV+EGW  F SM D Y I PGI+H  CMVDLLGRAG+L EA+  I E P  +  P +W 
Sbjct: 529 GLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWG 588

Query: 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458
            LL +C  H +  LAK   +++FELD  + G YV+LSNL     ++ +   +R+  K R 
Sbjct: 589 ALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNLHTSKKQYSEAAVVRQEAKSRK 648

Query: 459 VLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDM 518
           ++K PG + IE+ N    F +GD  H  S  +   L++L  ++   GY P+T    + D+
Sbjct: 649 LVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSYLEKLTAKMIEAGYRPETEAALY-DV 707

Query: 519 EDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           E+EEKE  ++ HSEKLAI FGLL+T PGT IR++KNLRVC
Sbjct: 708 EEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVC 747



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/359 (29%), Positives = 191/359 (53%), Gaps = 12/359 (3%)

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSG-LLPDDYSFPSL 128
           S ++HA  +FD +P PD VL+NT+  G S S+    A+  F  ++  G + PD  +  S+
Sbjct: 163 SRVDHARKVFDTVPSPDTVLWNTLLAGLSGSE----AVESFARMVCDGSVRPDATTLASV 218

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP 188
           L A A V    +  G+ +H FA K GL  + +V T LI+LY++C DVE+AR +F+ + +P
Sbjct: 219 LPAAAEVADVTM--GRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKP 276

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
            +V+YNA+I+ Y+ +     +++LF EL    L P   T+++ +   +  G   L + +H
Sbjct: 277 DLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLH 336

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
            ++ K G      V+TA+  +H +   ++ A   FD M  K  ++W+AMI  YA +G   
Sbjct: 337 GFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTE 396

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
            ++ +FE+M+K  V P+ IT    L AC+  G +  G  + + +  +  + P +     +
Sbjct: 397 MAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLG-KWLHRIITEEDLEPNVYVMTAL 455

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
           +D+  + G + EA R  + +  K+  + W  +++    H   G   + ++   ++ D+H
Sbjct: 456 IDMYAKCGSISEARRIFNTMDNKNV-VSWNAMIAGYGLH---GQGAEALKLYKDMLDAH 510


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/578 (39%), Positives = 340/578 (58%), Gaps = 44/578 (7%)

Query: 20  NTPNALSLLPRCT---SFRGLKQIHAVTIKTHLQN-DLNVLTKLINFCTQNPTTSSMEHA 75
           N    + LL RC    S R L +I A  I + + + D N++   + F   + +  ++ H+
Sbjct: 20  NHRKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIA--VKFIGVSSSHGNLRHS 77

Query: 76  HLLFDR-IPEPDIVLFNTMARGYSRSKTPIRAIFLFVE--LLNSGLLPDDYSFPSLLKAC 132
            L+F+  +  P+I  +N + + +S+       I  F    +L +   PD+Y+F S+LKAC
Sbjct: 78  VLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKAC 137

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS------------------- 173
           A  G   + EG+++HCF  K G  SNL+V  +L++LY +                     
Sbjct: 138 A--GLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVS 195

Query: 174 ------------DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ-ERN 220
                        V+ AR +F+ + E  +VS++ +I+ YAR+ +  +A+ LFR++Q E  
Sbjct: 196 WNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGG 255

Query: 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV 280
           L P DVT++S LS+CA LG+LDLGKWIH +I++  ++  + +  AL DM+AKCG + +A 
Sbjct: 256 LAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAK 315

Query: 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG 340
            VF  M  +D  +WS +I+  A +G  +++   F EM++  + P++I+F+GLL AC+H G
Sbjct: 316 GVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAG 375

Query: 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400
           LVD+G  YF  M   YGI P I+HYGC+VDLL RAGRLD+A   I+ +P++   I+W  L
Sbjct: 376 LVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGAL 435

Query: 401 LSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460
           L  C  + +    ++V+ RI ELD +H G  V L+N+ A  GR +D    R  M+D   +
Sbjct: 436 LGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSM 495

Query: 461 KVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMED 520
           K PGCS IE+NN V EFF GD  H  S  +   + EL  ++K+ GY P T LV H ++++
Sbjct: 496 KTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIH-NIDE 554

Query: 521 EEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           EEKE AL  HSEKLA+ FGL+NT  GTTIR+VKNLRVC
Sbjct: 555 EEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVC 592


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/586 (37%), Positives = 337/586 (57%), Gaps = 42/586 (7%)

Query: 8   PITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNP 67
           P++   PP + +  P     L      +   Q+HA  +   LQ    V +K++ F     
Sbjct: 61  PLSAPGPPPILSYAP-VFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYA--- 116

Query: 68  TTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPS 127
           ++  ++ +  +F+ I EP  +LFN+M R Y+R     R +  +  + + G   D ++FP 
Sbjct: 117 SSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPF 176

Query: 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE 187
           +LK+   V   ++  GK +H   +++GL  +LYV T+LI LY +C ++  A ++F+N++ 
Sbjct: 177 VLKSS--VELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTI 234

Query: 188 PCVVSYNAI-------------------------------ITAYARSSRPNEALSLFREL 216
             V S+NA+                               I+ Y++S    +ALSLF E+
Sbjct: 235 RDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEM 294

Query: 217 --QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
             ++  ++P  VT++S L +CA L +L+ G+ IHE   + GL+    V  AL  M+AKCG
Sbjct: 295 VKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCG 354

Query: 275 RLDDAVSVFD--NMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
            L DA + FD  N + K+  AW+ MI AYA++G G +++  F EM++A + PD+ITF GL
Sbjct: 355 SLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGL 414

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L  CSH+GLVD G  YF  M   Y I P ++HY C+ DLLGRAGRL EA + + E+P+ +
Sbjct: 415 LSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPA 474

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452
            P +W +LL++C  H NL +A+    ++F L+  + G+YV+LSN+ A AGRW++VD LR 
Sbjct: 475 GPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRA 534

Query: 453 LMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSL 512
           ++K +G  K PGCS IE+N     F  GD  H    ++   L+ L +++K  GY PDTS 
Sbjct: 535 IVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSY 594

Query: 513 VHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           V H D+ +EEKE  L  HSEKLA+ FG+LNTP  T +RV KNLR+C
Sbjct: 595 VLH-DISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRIC 639


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/567 (37%), Positives = 322/567 (56%), Gaps = 45/567 (7%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSS--MEHAHLLFDRIP 83
            LL  C + R   ++HA  ++  +  D     + + F  Q    +S  ++    L    P
Sbjct: 40  GLLTGCATLRRTGELHAAAVRAGVDGD-----RAVGFRLQRAYAASDRLDLTVTLLRLTP 94

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
           +P  V + +    +S     + A+ L  E+L  GL+P  ++  S L AC       L  G
Sbjct: 95  DPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPAC-----HGLALG 149

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS----------- 192
           + LH +A KL L  + YV T L+ +YA   D +AAR +F+ + +P VV            
Sbjct: 150 RALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKM 209

Query: 193 --------------------YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232
                               +NA+I  Y +  RPNEAL LFR +    + P +V ++ AL
Sbjct: 210 GALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILAL 269

Query: 233 SSCALLGSLDLGKWIHEYIKK-YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDT 291
           S+ A LG+ + G+W+H Y+K    +    +V TALIDM+ KCG L+DAVSVF+++  KD 
Sbjct: 270 SAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDI 329

Query: 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYS 351
             W+AMI  YA HG   K++ MF ++    + P +ITF+GLL ACSH+GLVDEG  +F S
Sbjct: 330 VVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQS 389

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
           M ++Y IVP I+HYGCMVDLLGRAG ++EA+  +  + I    ++W +LL++C  H N+ 
Sbjct: 390 MEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMA 449

Query: 412 LAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVN 471
           L +Q+ + +     ++ G Y++LSN+ A  G WE+V  +R +MK  G+ K PGCS+IEV 
Sbjct: 450 LGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVG 509

Query: 472 NVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHS 531
             V EF +GD  H  + ++   L+++   +K  G+VP T LV H D+++  KE AL  HS
Sbjct: 510 RKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLH-DLDEVTKEKALAVHS 568

Query: 532 EKLAITFGLLNTPPGTTIRVVKNLRVC 558
           EKLA+ FGL++T PG TI++VKNLR C
Sbjct: 569 EKLAVAFGLISTAPGETIKIVKNLRAC 595


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/567 (37%), Positives = 322/567 (56%), Gaps = 45/567 (7%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSS--MEHAHLLFDRIP 83
            LL  C + R   ++HA  ++  +  D     + + F  Q    +S  ++    L    P
Sbjct: 39  GLLTGCATLRRTGELHAAAVRAGVDGD-----RAVGFRLQRAYAASDRLDLTVTLLRLTP 93

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
           +P  V + +    +S     + A+ L  E+L  GL+P  ++  S L AC       L  G
Sbjct: 94  DPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPAC-----HGLALG 148

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS----------- 192
           + LH +A KL L  + YV T L+ +YA   D +AAR +F+ + +P VV            
Sbjct: 149 RALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKM 208

Query: 193 --------------------YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232
                               +NA+I  Y +  RPNEAL LFR +    + P +V ++ AL
Sbjct: 209 GALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILAL 268

Query: 233 SSCALLGSLDLGKWIHEYIKK-YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDT 291
           S+ A LG+ + G+W+H Y+K    +    +V TALIDM+ KCG L+DAVSVF+++  KD 
Sbjct: 269 SAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDI 328

Query: 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYS 351
             W+AMI  YA HG   K++ MF ++    + P +ITF+GLL ACSH+GLVDEG  +F S
Sbjct: 329 VVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQS 388

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
           M ++Y IVP I+HYGCMVDLLGRAG ++EA+  +  + I    ++W +LL++C  H N+ 
Sbjct: 389 MEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMA 448

Query: 412 LAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVN 471
           L +Q+ + +     ++ G Y++LSN+ A  G WE+V  +R +MK  G+ K PGCS+IEV 
Sbjct: 449 LGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVG 508

Query: 472 NVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHS 531
             V EF +GD  H  + ++   L+++   +K  G+VP T LV H D+++  KE AL  HS
Sbjct: 509 RKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLH-DLDEVTKEKALAVHS 567

Query: 532 EKLAITFGLLNTPPGTTIRVVKNLRVC 558
           EKLA+ FGL++T PG TI++VKNLR C
Sbjct: 568 EKLAVAFGLISTAPGETIKIVKNLRAC 594


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/543 (39%), Positives = 326/543 (60%), Gaps = 12/543 (2%)

Query: 22  PNALS---LLPRC---TSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PN ++   LL  C   T+    ++IH+  +K     D++V   LI+   +     S++ A
Sbjct: 444 PNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYAR---CGSIKDA 500

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
            LLF+++   DI+ +  M  G ++S     A+ +F ++  +GL P+  ++ S+L AC+  
Sbjct: 501 RLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACS-- 558

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
              AL+ G+++H   I+ GL ++ +V  TL+N+Y+ C  V+ AR++F+ +++  +V+YNA
Sbjct: 559 SPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNA 618

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +I  YA  +   EAL LF  LQE  LKP  VT ++ L++CA  GSL+  K IH  + K G
Sbjct: 619 MIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDG 678

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
                 +  AL+  +AKCG   DA+ VFD M  ++  +W+A+I   A HG+G   + +FE
Sbjct: 679 YLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFE 738

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
            M    + PD +TF+ LL ACSH GL++EG  YF SM   +GI P I+HYGCMVDLLGRA
Sbjct: 739 RMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRA 798

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
           G+LDE    I  +P ++   +W  LL +C  H N+ +A++  E   +LD  +   YV LS
Sbjct: 799 GQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALS 858

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           ++ A AG W+    LRKLM+ RGV K PG S IEV + +  F + D  H  S  +   LD
Sbjct: 859 HMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEKIYAELD 918

Query: 496 ELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNL 555
           +L   +KM GYVPDT  V H D+++ EKE A+ +HSE+LAI +GL++T PGT IR+ KNL
Sbjct: 919 KLTHAMKMEGYVPDTRSVMH-DVDEGEKENAVCHHSERLAIAYGLISTLPGTPIRIFKNL 977

Query: 556 RVC 558
           RVC
Sbjct: 978 RVC 980



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 113/452 (25%), Positives = 216/452 (47%), Gaps = 19/452 (4%)

Query: 17  LCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSME 73
           L       + LL  C S   L   ++IH   +K  L  D+NV   ++N   +     S+ 
Sbjct: 240 LALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAK---CGSIH 296

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
            A  +FD++    +V +  +  GY+       A  +F ++   G++P+  ++ ++L A +
Sbjct: 297 EAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFS 356

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
             G  AL+ GK +H   +  G  S+L V T L+ +YA+C   +  R++FE +    ++++
Sbjct: 357 --GPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAW 414

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           N +I   A      EA  ++ ++Q   + P  +T +  L++C    +L  G+ IH  + K
Sbjct: 415 NTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVK 474

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
            G    + V  ALI M+A+CG + DA  +F+ M  KD  +W+AMI   A  G G +++ +
Sbjct: 475 DGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAV 534

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           F++M +A + P+ +T+  +L ACS    +D G    +    + G+         +V++  
Sbjct: 535 FQDMQQAGLKPNRVTYTSILNACSSPAALDWG-RRIHQQVIEAGLATDAHVANTLVNMYS 593

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG----- 428
             G + +A +  D +  +   + +  ++   ++HN   L K+ + ++F+     G     
Sbjct: 594 MCGSVKDARQVFDRMTQRDI-VAYNAMIGGYAAHN---LGKEAL-KLFDRLQEEGLKPDK 648

Query: 429 GDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460
             Y+ + N CA +G  E    +  L+   G L
Sbjct: 649 VTYINMLNACANSGSLEWAKEIHSLVLKDGYL 680



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 157/337 (46%), Gaps = 7/337 (2%)

Query: 105 RAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTT 164
           RA+ +   L   G   +   +  +LK C  +  + L  G+++H   I+     + Y    
Sbjct: 124 RAMDVVQYLQQQGARVNSCDYMKMLKRC--IEVKDLVAGREVHEHIIQHCTVLDQYTVNA 181

Query: 165 LINLYAECSDVEAARRIFE--NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK 222
           LIN+Y +C  +E AR+++   N +E  V S+NA++  Y +     EAL L RE+Q+  L 
Sbjct: 182 LINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLA 241

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
               T +  LSSC    +L+ G+ IH    K  L   V V   +++M+AKCG + +A  V
Sbjct: 242 LGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREV 301

Query: 283 FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342
           FD M  K   +W+ +I  YA  G    +  +F++M +  V P+ IT++ +L A S    +
Sbjct: 302 FDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAAL 361

Query: 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
             G    +S     G    +     +V +  + G   +  +  ++L +    I W T++ 
Sbjct: 362 KWG-KTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKL-VNRDLIAWNTMIG 419

Query: 403 SCSSHNNLGLAKQVIERI-FELDDSHGGDYVILSNLC 438
             +   N   A ++  ++  E    +   YVIL N C
Sbjct: 420 GLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNAC 456



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 113/219 (51%), Gaps = 10/219 (4%)

Query: 207 NEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG--LDKYVKVNT 264
           + A+ + + LQ++  +      +  L  C  +  L  G+ +HE+I ++   LD+Y  VN 
Sbjct: 123 DRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYT-VN- 180

Query: 265 ALIDMHAKCGRLDDAVSVFD--NMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
           ALI+M+ +CG +++A  V++  N + +   +W+AM+V Y  +G   +++ +  EM +  +
Sbjct: 181 ALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGL 240

Query: 323 SPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           +    T + LL +C     ++ G   +  +M+ +  ++  +    C++++  + G + EA
Sbjct: 241 ALGRATTMRLLSSCKSPSALECGREIHVEAMKAR--LLFDVNVANCILNMYAKCGSIHEA 298

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
               D++  KS  + W  ++   +   +  +A ++ +++
Sbjct: 299 REVFDKMETKSV-VSWTIIIGGYADCGHSEIAFEIFQKM 336


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/536 (38%), Positives = 325/536 (60%), Gaps = 7/536 (1%)

Query: 23  NALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           + + LL RC +   ++Q+HA  +      DL +  KL+    Q+    +++ A+ LFD +
Sbjct: 5   SCIDLLLRCRNVFHIRQVHAHVVANGTLQDLVIANKLLYTYAQHK---AIDDAYSLFDGL 61

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
              D   ++ M  G++++         F ELL  G+ PD+Y+ P +++ C       L+ 
Sbjct: 62  TMRDSKTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCR--DRTDLQI 119

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G+ +H   +K GL S+ +VC +L+++YA+C  VE A+R+FE +    +V++  +I AYA 
Sbjct: 120 GRVIHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYA- 178

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
                E+L LF  ++E  + P  V M++ +++CA LG++   ++ ++YI + G    V +
Sbjct: 179 DCNAYESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVIL 238

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
            TA+IDM+AKCG ++ A  VFD M  K+  +WSAMI AY  HG+G  +I +F  M+   +
Sbjct: 239 GTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAI 298

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            P+ +TF+ LLYACSH GL++EG  +F SM +++ + P +KHY CMVDLLGRAGRLDEA 
Sbjct: 299 LPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEAL 358

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
           R I+ + ++    LW  LL +C  H+ + LA++    + EL   + G YV+LSN+ A+AG
Sbjct: 359 RLIEAMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAG 418

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           +WE V   R +M  R + K+PG + IEV+N   +F  GD  H  S ++ + L  L+K+L+
Sbjct: 419 KWEKVAKFRDMMTQRKLKKIPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLE 478

Query: 503 MVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           M GYVPDT  V   D+E+E K+  L  HSEKLAI FGL+  P G  IR+ KNLRVC
Sbjct: 479 MAGYVPDTDFVLQ-DVEEEVKQEMLYTHSEKLAIAFGLIAIPEGEPIRISKNLRVC 533


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/396 (47%), Positives = 268/396 (67%), Gaps = 1/396 (0%)

Query: 163 TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK 222
           T +I  YA+   ++ AR +F+ + E   + +N +I  YA+   PNE L LFR++    ++
Sbjct: 10  TAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVR 69

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
           P +VT+L+ LS+C   G+L+ G+W+H YI+  G+   V+V T+LIDM++KCG L+DA  V
Sbjct: 70  PNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLV 129

Query: 283 FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342
           F+ +S KD  AW++M+V YA HG    ++ +F+EM      P +ITF+G+L ACSH GLV
Sbjct: 130 FERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLV 189

Query: 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
            EGW +FYSM+D+YGI P ++HYGCMV+LLGRAG L+EAY  +  + I   P+LW TLL 
Sbjct: 190 SEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLG 249

Query: 403 SCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKV 462
           +C  H N+ L +Q+ E +   + ++ G YV+LSN+ A AG WE V  +R LMK+ G  K 
Sbjct: 250 ACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGFEKE 309

Query: 463 PGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEE 522
           PGCSSIEVNN V EF +GD  H  S ++ + L+E+   LK  GY P T +V H D+ED +
Sbjct: 310 PGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLH-DLEDAQ 368

Query: 523 KEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           KE +L  HSEKLA+ FGL+ T PGTTI++VKNLRVC
Sbjct: 369 KERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVC 404



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 147/272 (54%), Gaps = 8/272 (2%)

Query: 56  LTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN 115
           L  L    T       ++ A +LFD + E D + +N M  GY++   P   + LF ++LN
Sbjct: 6   LVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLN 65

Query: 116 SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDV 175
           + + P++ +  ++L AC   GA  LE G+ +H +    G+  N+ V T+LI++Y++C  +
Sbjct: 66  AKVRPNEVTVLAVLSACGQTGA--LETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSL 123

Query: 176 EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSC 235
           E AR +FE IS   VV++N+++  YA      +AL LF+E+     +PTD+T +  L++C
Sbjct: 124 EDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNAC 183

Query: 236 ALLGSLDLG-KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQA 293
           +  G +  G K+ +    +YG++  V+    ++++  + G L++A  +  NM   +D   
Sbjct: 184 SHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVL 243

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
           W  ++ A   HG    +I + E++ +  VS +
Sbjct: 244 WGTLLGACRLHG----NIALGEQIAEYLVSQN 271



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 99/244 (40%), Gaps = 41/244 (16%)

Query: 11  QSPPPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNP 67
           Q    K+  N    L++L  C     L   + +H+      +  ++ V T LI+  ++  
Sbjct: 62  QMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSK-- 119

Query: 68  TTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPS 127
              S+E A L+F+RI   D+V +N+M  GY+       A+ LF E+   G  P D +F  
Sbjct: 120 -CGSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIG 178

Query: 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE 187
           +L AC+  G  + E  K  +    + G+                               E
Sbjct: 179 VLNACSHAGLVS-EGWKFFYSMKDEYGI-------------------------------E 206

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
           P V  Y  ++    R+    EA  L + ++   +    V   + L +C L G++ LG+ I
Sbjct: 207 PKVEHYGCMVNLLGRAGYLEEAYELVKNME---IDQDPVLWGTLLGACRLHGNIALGEQI 263

Query: 248 HEYI 251
            EY+
Sbjct: 264 AEYL 267


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/488 (39%), Positives = 306/488 (62%), Gaps = 3/488 (0%)

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130
           ++ +A  +FD + +  I+ +  M   Y         + LFV++L  G+ P++ +  SL+K
Sbjct: 277 NLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVK 336

Query: 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV 190
            C   GA  LE GK LH F ++ G   +L + T  I++Y +C DV +AR +F++     +
Sbjct: 337 ECGTAGA--LELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDL 394

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY 250
           + ++A+I++YA+++  +EA  +F  +    ++P + TM+S L  CA  GSL++GKWIH Y
Sbjct: 395 MMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSY 454

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310
           I K G+   + + T+ +DM+A CG +D A  +F   + +D   W+AMI  +A HG G  +
Sbjct: 455 IDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAA 514

Query: 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370
           + +FEEM    V+P++ITF+G L+ACSH+GL+ EG   F+ M  ++G  P ++HYGCMVD
Sbjct: 515 LELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVD 574

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430
           LLGRAG LDEA+  I  +P++    ++ + L++C  H N+ L +   ++   L+    G 
Sbjct: 575 LLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGY 634

Query: 431 YVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDL 490
            V++SN+ A A RW DV Y+R+ MKD G++K PG SSIEVN ++ EF  GD  H  +  +
Sbjct: 635 NVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDREHPDAKKV 694

Query: 491 QKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIR 550
            + +DE+ ++L+  GY PD S V H +++ E+K  AL YHSEKLA+ +GL++T PG  IR
Sbjct: 695 YEMIDEMREKLEDAGYTPDVSCVLH-NIDKEKKVSALNYHSEKLAMAYGLISTAPGVPIR 753

Query: 551 VVKNLRVC 558
           +VKNLRVC
Sbjct: 754 IVKNLRVC 761



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 202/401 (50%), Gaps = 9/401 (2%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           P+ L       SF   +++H   +K     D+ V   LI   ++     S+  A LLFD+
Sbjct: 128 PSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSE---VGSLALARLLFDK 184

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           I   D+V ++TM R Y RS     A+ L  ++    + P +    S+    A +    L+
Sbjct: 185 IENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELAD--LK 242

Query: 142 EGKQLHCFAIKLGL--NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
            GK +H + ++ G    S + +CT LI++Y +C ++  ARR+F+ +S+  ++S+ A+I A
Sbjct: 243 LGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAA 302

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
           Y   +  NE + LF ++    + P ++TMLS +  C   G+L+LGK +H +  + G    
Sbjct: 303 YIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLS 362

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           + + TA IDM+ KCG +  A SVFD+   KD   WSAMI +YA +    ++  +F  M  
Sbjct: 363 LVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTG 422

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
             + P+E T + LL  C+  G ++ G  + +S  DK GI   +      VD+    G +D
Sbjct: 423 CGIRPNERTMVSLLMICAKAGSLEMG-KWIHSYIDKQGIKGDMILKTSFVDMYANCGDID 481

Query: 380 EAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
            A+R   E   +    +W  ++S  + H +   A ++ E +
Sbjct: 482 TAHRLFAEATDRDIS-MWNAMISGFAMHGHGEAALELFEEM 521



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/460 (25%), Positives = 212/460 (46%), Gaps = 54/460 (11%)

Query: 33  SFRGLKQIHAVTIK----------THLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFD-- 80
           SF+   Q H+ T+K           H+Q +L++          N   +   H H +    
Sbjct: 22  SFQNTNQYHSPTLKFTQSQPKPNVPHIQQELHI----------NLNETQQLHGHFIKTSS 71

Query: 81  ----RIP-------EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
               R+P         +  + + +   Y ++  P  A  ++  +  +    D++  PS+L
Sbjct: 72  NCSYRVPLAALESYSSNAAIHSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVL 131

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC 189
           KAC  + +  L  G+++H F +K G + +++VC  LI +Y+E   +  AR +F+ I    
Sbjct: 132 KACCLIPSFLL--GQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKD 189

Query: 190 VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           VVS++ +I +Y RS   +EAL L R++    +KP+++ M+S     A L  L LGK +H 
Sbjct: 190 VVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHA 249

Query: 250 YIKKYGL--DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQG 307
           Y+ + G      V + TALIDM+ KC  L  A  VFD +S     +W+AMI AY      
Sbjct: 250 YVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNL 309

Query: 308 HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367
           ++ + +F +M+   + P+EIT L L+  C   G ++ G    ++   + G    +     
Sbjct: 310 NEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELG-KLLHAFTLRNGFTLSLVLATA 368

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
            +D+ G+ G +  A    D    K   ++W  ++SS + +N        I+  F++    
Sbjct: 369 FIDMYGKCGDVRSARSVFDSFKSKDL-MMWSAMISSYAQNN-------CIDEAFDIFVHM 420

Query: 428 GG--------DYVILSNLCARAGRWEDVDYLRKLMKDRGV 459
            G          V L  +CA+AG  E   ++   +  +G+
Sbjct: 421 TGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGI 460



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 92/231 (39%), Gaps = 43/231 (18%)

Query: 20  NTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N    +SLL  C     L   K IH+   K  ++ D+ + T   +F         ++ AH
Sbjct: 428 NERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKT---SFVDMYANCGDIDTAH 484

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            LF    + DI ++N M  G++       A+ LF E+   G+ P+D +F   L AC+  G
Sbjct: 485 RLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSG 544

Query: 137 AEALEEGKQL-HCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
              L+EGK+L H    + G                                 P V  Y  
Sbjct: 545 --LLQEGKRLFHKMVHEFGFT-------------------------------PKVEHYGC 571

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW 246
           ++    R+   +EA  L + +    ++P      S L++C L  ++ LG+W
Sbjct: 572 MVDLLGRAGLLDEAHELIKSMP---MRPNIAVFGSFLAACKLHKNIKLGEW 619


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/606 (35%), Positives = 345/606 (56%), Gaps = 61/606 (10%)

Query: 4   TPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFC 63
            P+     SP P L  + P        C + R LKQ+HA+ IKT    D     ++I FC
Sbjct: 7   NPNRTFNFSPQPPLILSKP-----FTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFC 61

Query: 64  TQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKT---PIRAIFLFVELLNSGLL- 119
               ++  +++A  +F ++PEP+   +NT+ R  + +        A+ LF  +L  G + 
Sbjct: 62  AF--SSRDIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVK 119

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS------ 173
           P+ ++FPS+LKACA   A  L EGKQ+H   +K G + + +V + L+ +Y  C+      
Sbjct: 120 PNRFTFPSVLKACA--RASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAY 177

Query: 174 -----------------------------------------DVEAARRIFENISEPCVVS 192
                                                    D+++A+ +F+ + +  VVS
Sbjct: 178 SLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVS 237

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +N +I+ YA++    EA++LF+E+Q  N+ P  VT++S L + A +G+L+LGKWIH Y  
Sbjct: 238 WNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAG 297

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           K  ++    + +AL+DM++KCG +D+A+ VF+ +  ++   WSA+I A+A HG+   +I+
Sbjct: 298 KNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAII 357

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
            F  M KA V+P+++ ++G+L ACSH GLV+EG ++F  M    G+ P I+HYGCMVDLL
Sbjct: 358 HFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLL 417

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432
           GRAG L+EA   I  +PI+   ++W+ LL +C  H NL + ++V E + EL     G YV
Sbjct: 418 GRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYV 477

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
            LSNL A  G WE V  +R  MK   + K PGCS IE++ ++ EF   D  HS + ++Q 
Sbjct: 478 ALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQA 537

Query: 493 ALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVV 552
            L E+  +L+  GY P+T  V   + +++E+  AL+YHSEK+A+ FGL++T P   +++V
Sbjct: 538 MLGEMSMKLRSNGYRPNTLEVFL-NTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIV 596

Query: 553 KNLRVC 558
           KNLR+C
Sbjct: 597 KNLRIC 602


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/565 (38%), Positives = 346/565 (61%), Gaps = 16/565 (2%)

Query: 3   TTPSP---PITQSPPPKLCT-NTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTK 58
           + PSP   P + S P  L + +    +SLL R      +  IHA  I+     D  ++ +
Sbjct: 17  SGPSPKPHPNSNSNPKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFE 76

Query: 59  LINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118
           L+  C++     ++++A  +F     P++ L+  +  G+  S   + AI L+  +L+  +
Sbjct: 77  LLRSCSK---CHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESI 133

Query: 119 LPDDYSFPSLLKACACVGAE-ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEA 177
           LPD+Y   S+LKAC   G++ AL EG+++H  A+KLG +SN  V   ++ LY +C ++  
Sbjct: 134 LPDNYLMASILKAC---GSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGD 190

Query: 178 ARRIFENISEPCV----VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
           ARR+FE + E  V    V + A+I  + R+   N AL  FR +Q  N++P + T++  LS
Sbjct: 191 ARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLS 250

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
           +C+ LG+L++G+W+H Y++K+ ++  + V  ALI+M+++CG +D+A +VFD M  +D   
Sbjct: 251 ACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVIT 310

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           ++ MI   + +G+  ++I +F  M+  ++ P  +TF+G+L ACSH GLVD G+  F+SM 
Sbjct: 311 YNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMA 370

Query: 354 DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413
             Y + P I+HYGCMVDLLGR GRL+EAY  I  + +    I+  TLLS+C  H NL L 
Sbjct: 371 RDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELG 430

Query: 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNV 473
           +QV + + +   +  G YV+LS++ A +G+W++   +R  MK+ G+ K PGCSSIEVNN 
Sbjct: 431 EQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNE 490

Query: 474 VREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEK 533
           + EF  GD  H     + + L+EL + L++ GY P+  +V   D+ED EKE AL  HSE+
Sbjct: 491 IHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQ-DIEDGEKEWALAMHSER 549

Query: 534 LAITFGLLNTPPGTTIRVVKNLRVC 558
           LAI +GL++T P T IRV+KNLRVC
Sbjct: 550 LAICYGLISTEPCTMIRVMKNLRVC 574


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/592 (36%), Positives = 337/592 (56%), Gaps = 46/592 (7%)

Query: 2   ATTPS-PPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLI 60
           A  PS  P + S           A SLL  C++ R   ++HA  ++  L +D     + +
Sbjct: 4   AVLPSVAPASDSGGHHGALTADRAASLLAACSTARRASELHAAVVRKGLDSD-----RAV 58

Query: 61  NFCTQNPTTSS--MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118
            F  Q    +S  ++H+  L  R  +P  + + +    +S     +  + L  ++L+ GL
Sbjct: 59  AFRLQRAYAASGRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGL 118

Query: 119 LPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLY--------- 169
           LP  ++  + L AC       L  G+ LH +A KL L+ + YV T L+++Y         
Sbjct: 119 LPTAHTLSASLPAC-----RGLSLGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAA 173

Query: 170 ----------------------AECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPN 207
                                 A    ++ ARR+F+ +     + +NA+I  Y +  +PN
Sbjct: 174 RALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPN 233

Query: 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG-LDKYVKVNTAL 266
           EAL LFR +   + +P +VT++  LS+ A LG+++ GKW+H Y+K    +   V+V TAL
Sbjct: 234 EALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATAL 293

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           +DM+ KCG L+DAV+VF  +  KD   W+AMI  YA HG   K++ MF ++    + P +
Sbjct: 294 VDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTD 353

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
           ITF+GLL ACSH+GLV+EG ++F SM  +YGI P I+HYGCMVDLLGRAG ++EA+  + 
Sbjct: 354 ITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQ 413

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWED 446
            L I    ++W +LL++C  H N+ L +++ + +     ++ G Y++LSN+ A  G+WE+
Sbjct: 414 SLTITPDAVMWVSLLAACRLHKNMALGQRIADFLVANGLANSGMYILLSNIYAAVGKWEE 473

Query: 447 VDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGY 506
           V  +R +MK  G+ K PGCS+IE++  V EF +GD  H  + ++   LD++   +K  G+
Sbjct: 474 VARVRSMMKASGIQKEPGCSAIEIDRKVYEFVAGDMSHPCTDEIYAMLDKMNALVKEHGH 533

Query: 507 VPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           VP T LV H D+++  KE AL  HSEKLA+ FGL+++ PG+TI++VKNLR C
Sbjct: 534 VPQTELVLH-DLDEATKEKALAVHSEKLAVAFGLISSRPGSTIKIVKNLRAC 584


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/536 (39%), Positives = 324/536 (60%), Gaps = 8/536 (1%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNV--LTKLINFCTQNPTTSSMEHAHLLFDRI 82
           ++L     + R  K +HA  I+      + V   T L++   +      +  A  LF+ +
Sbjct: 202 VNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAK---CGHLGLARQLFNGL 258

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
            +  +V +  M  G  RS        LF+ +    + P++ +  SL+  C   GA  L+ 
Sbjct: 259 TQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGA--LQL 316

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           GKQLH + ++ G + +L + T L+++Y +CSD+  AR +F++     V+ + A+++AYA+
Sbjct: 317 GKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQ 376

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
           ++  ++A +LF +++   ++PT VT++S LS CA+ G+LDLGKW+H YI K  ++    +
Sbjct: 377 ANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCIL 436

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
           NTAL+DM+AKCG ++ A  +F     +D   W+A+I  +A HG G +++ +F EM +  V
Sbjct: 437 NTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGV 496

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            P++ITF+GLL+ACSH GLV EG   F  M   +G+VP I+HYGCMVDLLGRAG LDEA+
Sbjct: 497 KPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAH 556

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
             I  +PIK   I+W  L+++C  H N  L +    ++ E++  + G  V++SN+ A A 
Sbjct: 557 EMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAAN 616

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           RW D   +RK MK  G+ K PG S IEVN  V EF  GD  H     + + L E+ ++L 
Sbjct: 617 RWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLN 676

Query: 503 MVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             GYVPDTS V   ++++EEKE AL YHSEKLA+ FGL++T P T IR+VKNLRVC
Sbjct: 677 EAGYVPDTSTVLL-NIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVC 731



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 119/414 (28%), Positives = 214/414 (51%), Gaps = 22/414 (5%)

Query: 38  KQIHAVTIKTHLQNDL---NVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMA 94
           K+IH   +K  L  D+   N L  +   C      + +E+A L+FD++ E D+V ++TM 
Sbjct: 114 KEIHGFVLKKGLDRDVFVGNALMLMYGEC------ACVEYARLVFDKMMERDVVSWSTMI 167

Query: 95  RGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
           R  SR+K    A+ L  E+    + P + +  S++   A      +  GK +H + I+  
Sbjct: 168 RSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFA--DTANMRMGKAMHAYVIRNS 225

Query: 155 LNSNLYVCTT--LINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL 212
            N ++ V TT  L+++YA+C  +  AR++F  +++  VVS+ A+I    RS+R  E   L
Sbjct: 226 NNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKL 285

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           F  +QE N+ P ++TMLS +  C   G+L LGK +H YI + G    + + TAL+DM+ K
Sbjct: 286 FIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGK 345

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
           C  + +A ++FD+   +D   W+AM+ AYA      ++  +F++M  + V P ++T + L
Sbjct: 346 CSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSL 405

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L  C+  G +D G  + +S  DK  +         +VD+  + G ++ A R   E  I  
Sbjct: 406 LSLCAVAGALDLG-KWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIE-AISR 463

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS----HGGDYVILSNLCARAG 442
              +W  +++  + H   G  ++ ++   E++      +   ++ L + C+ AG
Sbjct: 464 DICMWNAIITGFAMH---GYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAG 514



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 173/332 (52%), Gaps = 23/332 (6%)

Query: 122 DYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRI 181
           ++  PS+LKAC  V    L  GK++H F +K GL+ +++V   L+ +Y EC+ VE AR +
Sbjct: 94  NFMAPSVLKACGQVSWTQL--GKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLV 151

Query: 182 FENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSL 241
           F+ + E  VVS++ +I + +R+   + AL L RE+    ++P++V M+S ++  A   ++
Sbjct: 152 FDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANM 211

Query: 242 DLGKWIHEYIKKYGLDKYVKV--NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIV 299
            +GK +H Y+ +   ++++ V   TAL+DM+AKCG L  A  +F+ ++ K   +W+AMI 
Sbjct: 212 RMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIA 271

Query: 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGI 358
                 +  +   +F  M +  + P+EIT L L+  C  TG +  G   + Y +R+ + +
Sbjct: 272 GCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSV 331

Query: 359 VPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
              +     +VD+ G+   +  A    D    +   ++W  +LS+ +  N        I+
Sbjct: 332 SLALA--TALVDMYGKCSDIRNARALFDSTQNRDV-MIWTAMLSAYAQAN-------CID 381

Query: 419 RIFELDDSHGGD--------YVILSNLCARAG 442
           + F L D              V L +LCA AG
Sbjct: 382 QAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAG 413


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/533 (38%), Positives = 321/533 (60%), Gaps = 12/533 (2%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP 85
           S+L RC      +Q+H   +K+   +++ V + L++   +      +++A  + + + + 
Sbjct: 277 SVLARCFG----EQVHGFIVKSGFGSNVYVQSALVDMYAK---CGDLKNAKNMLETMEDD 329

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
           D+V +N++  G+ R      A+ LF  +    +  DDY+FPS+L  C  VG+      K 
Sbjct: 330 DVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCV-VGSI---NPKS 385

Query: 146 LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSR 205
           +H   IK G  +   V   L+++YA+  D++ A  +FE + E  V+S+ +++T YA+++ 
Sbjct: 386 VHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNS 445

Query: 206 PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTA 265
             E+L +F +++   + P    + S LS+CA L  L+ GK +H    K GL     V  +
Sbjct: 446 HEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNS 505

Query: 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
           L+ M+AKCG LDDA ++F +M  KD   W+A+IV YA +G+G  S+  ++ M+ +   PD
Sbjct: 506 LVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPD 565

Query: 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI 385
            ITF+GLL+ACSH GLVDEG  YF  M   YGI PG +HY CM+DL GR+G+LDEA + +
Sbjct: 566 FITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLL 625

Query: 386 DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWE 445
           D++ +K    +W++LLS+C  H NL LA++    +FEL+  +   YV+LSN+ + + +W 
Sbjct: 626 DQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYSASRKWN 685

Query: 446 DVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVG 505
           DV  +RKLMK +G++K PGCS +E+N+ V  F S D  H    ++   +DE++  +K  G
Sbjct: 686 DVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPREAEIYTKIDEIILRIKEAG 745

Query: 506 YVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           YVPD S   H DM+ E KE+ L YHSEKLA+ FGLL  PP   IR+ KNLRVC
Sbjct: 746 YVPDMSFSLH-DMDKEGKEVGLAYHSEKLAVAFGLLAAPPSAPIRIFKNLRVC 797



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/418 (23%), Positives = 198/418 (47%), Gaps = 56/418 (13%)

Query: 31  CTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLF 90
           C     L+ IH  T  ++    +    +L+N   Q   +  +  A  LFD++P+ D   +
Sbjct: 45  CKFMAFLRSIHTTTAASY--ESIYQTNQLLN---QLSKSGQVNDARKLFDKMPQKDEYSW 99

Query: 91  NTM------------AR-------------------GYSRSKTPIRAIFLFVELLNSGLL 119
           NTM            AR                   GY +    + A  LF  +   G  
Sbjct: 100 NTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWK 159

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179
              ++  S+L+ C+ +G   ++ G+ +H F +K G   N++V T L+++YA+C  V  A 
Sbjct: 160 ASQFTLGSVLRVCSSLGL--IQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAE 217

Query: 180 RIFENIS--EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL 237
            +F+ +       V + A++T YA++    +A+  FR +  + ++    T  + L++C+ 
Sbjct: 218 FLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSS 277

Query: 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297
           + +   G+ +H +I K G    V V +AL+DM+AKCG L +A ++ + M   D  +W+++
Sbjct: 278 VLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSL 337

Query: 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG 357
           +V +  HG   +++ +F+ M    +  D+ TF  +L  C   G ++         +  +G
Sbjct: 338 MVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCV-VGSINP--------KSVHG 388

Query: 358 IV--PGIKHY----GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
           ++   G ++Y      +VD+  + G +D AY   +++ ++   I W +L++  + +N+
Sbjct: 389 LIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKM-LEKDVISWTSLVTGYAQNNS 445



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 126/272 (46%), Gaps = 8/272 (2%)

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
           Y   T+I+ Y     +  AR +F+  S    +++++II+ Y +     EA  LFR ++  
Sbjct: 97  YSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLE 156

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
             K +  T+ S L  C+ LG +  G+ IH ++ K G +  V V T L+DM+AKC  + +A
Sbjct: 157 GWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEA 216

Query: 280 VSVFDNMS--GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
             +F  +    K+   W+AM+  YA +G G+K++  F  M    V  ++ TF  +L ACS
Sbjct: 217 EFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACS 276

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
              L        +    K G    +     +VD+  + G L  A   ++ +      + W
Sbjct: 277 SV-LARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETME-DDDVVSW 334

Query: 398 RTLLSSCSSHN----NLGLAKQVIERIFELDD 425
            +L+     H      L L K +  R  ++DD
Sbjct: 335 NSLMVGFVRHGLEEEALRLFKNMHGRNMKIDD 366


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/538 (38%), Positives = 332/538 (61%), Gaps = 11/538 (2%)

Query: 26  SLLPRC---TSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  C   T+ R  +++HA  IKT  +  + + T+LI    +      +  A  + D +
Sbjct: 15  SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNK---CRCLGDARRVLDEM 71

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           PE ++V +  M  GYS+      A+ LFVE+L SG  P++++F ++L +C    +   + 
Sbjct: 72  PERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSC--TSSSGFQL 129

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G+Q+H   IK    S+++V ++L+++YA+   +  ARR+F+ + E  VVS  AII+ YA+
Sbjct: 130 GRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQ 189

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
                EAL LFR LQ   ++   VT  S L++ + L +LD G+ +H ++ +  L  YV +
Sbjct: 190 LGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVL 249

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA-Q 321
             +LIDM++KCG L  +  +FD+M  +   +W+AM+V Y+ HG G +++ +F+ M +  +
Sbjct: 250 QNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENK 309

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSM-RDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
           V PD +TFL +L  CSH G+ D G   FY M   K G  P I+HYGC+VDL GRAGR++E
Sbjct: 310 VKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEE 369

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           A+ FI ++P + T  +W +LL +C  H N+ + + V  R+ E++  + G+YVILSNL A 
Sbjct: 370 AFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYAS 429

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
           AGRW+DV  +R+LMK++ V+K PG S IE++  +  F + D  H    ++   + EL  +
Sbjct: 430 AGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIK 489

Query: 501 LKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +K  GYVP+ S V + D++DE+KE  L+ HSEKLA+ FGL+ TP GT +R++KNLR+C
Sbjct: 490 IKEAGYVPELSCVLY-DVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRIC 546


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/595 (37%), Positives = 340/595 (57%), Gaps = 75/595 (12%)

Query: 32  TSFRGLKQIHAVTIKT-HLQNDLNVLTKLINFCTQNPTTS--SMEHAHLLFDRIPEPDIV 88
           TS   LKQ HA+ ++T HLQ D  +   L+       T    S E +  +FD + +P++ 
Sbjct: 46  TSLHHLKQAHALILRTGHLQ-DSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVF 104

Query: 89  LFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHC 148
           L+N M +    +  P +AI L+ E++ +   P+ Y++P++LKAC+  G  A  EG Q+H 
Sbjct: 105 LWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVA--EGVQVHA 162

Query: 149 FAIKLGLNSNLYVCTTLINLYA--------------------------------ECSDVE 176
             +K GL  + ++ ++ I +YA                                   +VE
Sbjct: 163 HLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVE 222

Query: 177 AARRIFENISEPCVVS-YNAIITAYARSSRPN---------------------------- 207
           AAR +FE + +  ++S +NA+I+ ++R                                 
Sbjct: 223 AARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEG 282

Query: 208 ---EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
              EAL +F ++Q+  ++P    + S LS+CA LG+LD G+WIH Y K+  +     + T
Sbjct: 283 CFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGT 342

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
           +L+DM+AKCGR+D A  VF+ MS K+  +W+AMI   A HG+   +I +F +M    + P
Sbjct: 343 SLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DIYP 399

Query: 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF 384
           +EITF+G+L AC+H GLV +G   F SMR +YG+ P I+HYGC+VDLLGRAG L EA + 
Sbjct: 400 NEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKV 459

Query: 385 IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444
           +  +P + TP +W  LL +C  H N+ L ++V + + EL+  + G Y +LSN+ A+AGRW
Sbjct: 460 VSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRW 519

Query: 445 EDVDYLRKLMKDRGVLKVPGCSSIEVN-NVVREFFSGDGVHSYSTDLQKALDELVKELKM 503
           E+V  +RKLMK+RG+   PG S I++    V +F  GDG H    D+ + LD++ + L+M
Sbjct: 520 EEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQM 579

Query: 504 VGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            GY PD S V   D+++EEKE A+  HSEKLAI FGL+NT PGTTIR+VKNLRVC
Sbjct: 580 EGYEPDPSQVLF-DIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVC 633


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/530 (39%), Positives = 326/530 (61%), Gaps = 15/530 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +Q H   +    + DL V + L++  ++      +  A  LFD I   +IV + +M  GY
Sbjct: 172 RQAHQQALIFGFEPDLFVSSALVDMYSK---CGELRDARTLFDEISHRNIVSWTSMITGY 228

Query: 98  SRSKTPIRAIFLFVELL--------NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCF 149
            ++    RA+ LF E L        +  +  D  +  S+L AC+ V  +++ EG  +H F
Sbjct: 229 VQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEG--VHGF 286

Query: 150 AIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEA 209
            IK G   +L V  TL++ YA+C ++  +RR+F+ ++E  V+S+N+II  YA++    E+
Sbjct: 287 LIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTES 346

Query: 210 LSLF-RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALID 268
           + +F R +++  +    VT+ + L +CA  GS  LGK IH+ + K GL+  V V T++ID
Sbjct: 347 MEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIID 406

Query: 269 MHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT 328
           M+ KCG+++ A   FD M  K+ ++WSAM+  Y  HG   +++ +F EM  A V P+ IT
Sbjct: 407 MYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYIT 466

Query: 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388
           F+ +L ACSH GL++EGW++F +M  ++ + PG++HYGCMVDLLGRAG L EA+  I  +
Sbjct: 467 FVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGM 526

Query: 389 PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVD 448
            ++   ++W  LL +C  H N+ L +    ++FELD  + G YV+LSN+ A AGRWEDV+
Sbjct: 527 KLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVE 586

Query: 449 YLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVP 508
            +R LMK+ G++K PG S +++   V  F  GD  H     + + L++L  +L+ VGYVP
Sbjct: 587 RMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVP 646

Query: 509 DTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           D + V H D+  EEKE+ LR HSEKLA+ FG++NT PGTTI ++KNLRVC
Sbjct: 647 DMTSVLH-DVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVC 695



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 195/371 (52%), Gaps = 23/371 (6%)

Query: 64  TQNPTTSSMEHAHLLFDR-IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDD 122
           + NP  ++      LF++ + + ++  +N++    +RS   + A+  F  +    L P+ 
Sbjct: 99  SNNPNLTT------LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNR 152

Query: 123 YSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF 182
            +FP  +K+C+ +    L  G+Q H  A+  G   +L+V + L+++Y++C ++  AR +F
Sbjct: 153 STFPCAIKSCSAL--LDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLF 210

Query: 183 ENISEPCVVSYNAIITAYARSSRPNEALSLFRE-LQERNLKPTD-------VTMLSALSS 234
           + IS   +VS+ ++IT Y ++   + AL LF+E L E +    D       + M+S LS+
Sbjct: 211 DEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSA 270

Query: 235 CALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAW 294
           C+ +    + + +H ++ K G +  + V   L+D +AKCG L  +  VFD M+ +D  +W
Sbjct: 271 CSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISW 330

Query: 295 SAMIVAYATHGQGHKSILMFEEMMK-AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           +++I  YA +G   +S+ +F  M+K  +++ + +T   +L AC+H+G    G    +   
Sbjct: 331 NSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLG-KCIHDQV 389

Query: 354 DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413
            K G+   +     ++D+  + G+++ A +  D +  K+    W  +++    H   G A
Sbjct: 390 IKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKS-WSAMVAGYGMH---GHA 445

Query: 414 KQVIERIFELD 424
           K+ +E  +E++
Sbjct: 446 KEALEVFYEMN 456


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/547 (37%), Positives = 334/547 (61%), Gaps = 11/547 (2%)

Query: 16  KLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           K+  N+    +++      + L+Q+HA  I T      ++LTKLI       +  ++ + 
Sbjct: 4   KVAANSAAYEAIVRAGPRVKQLQQVHAHLIVTSYGRSRSLLTKLITLAC---SARAIAYT 60

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
           HLLF  +P PD  LFN++ +  S+ + P+  +  +  +L+S + P +Y+F S++K+CA +
Sbjct: 61  HLLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADL 120

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
              AL+ GK +HC A+  G   + YV   L+  Y++C D+EAAR++F+ + E  VV++N+
Sbjct: 121 --SALKIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNS 178

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +++ + ++    +A+ +F +++E   +P   T +S LS+CA  G++ LG W+H+YI   G
Sbjct: 179 LVSGFEQNGLAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGAISLGSWVHQYIVSEG 238

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
           LD  VK+ TALI+++++CG +  A  VFD M   +  AW+AMI AY THG G +++ +F 
Sbjct: 239 LDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGKQAVDLFN 298

Query: 316 EMMKAQVS-PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
           +M     S P+ +TF+ +L AC+H GLV++G + +  M + Y ++PG++H+ C+VD+LGR
Sbjct: 299 KMEDDCGSIPNNVTFVAVLSACAHAGLVEDGRSVYKRMTESYRLIPGVEHHVCIVDMLGR 358

Query: 375 AGRLDEAYRFIDELPI---KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
           AG LDEAYRFI +L      + P LW  +L +C  H N  L  ++ +R+  L+  + G +
Sbjct: 359 AGFLDEAYRFIQQLDATGNATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPENPGHH 418

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           V+LSN+ A +G+ ++V ++R  M    + K  G S IEV N    F  GD  H  + ++ 
Sbjct: 419 VMLSNIYALSGKTDEVSHIRDRMMRNNLRKQVGYSIIEVENKTYLFSMGDESHQETGEIY 478

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
           + L+ L+   K +GY P +  V H  +E+EEKE ALRYHSEKLA+ FGLL T   + I V
Sbjct: 479 RYLETLISRCKEIGYAPVSEEVMH-QVEEEEKEFALRYHSEKLAVAFGLLKTVD-SAITV 536

Query: 552 VKNLRVC 558
           VKNLR+C
Sbjct: 537 VKNLRIC 543


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/519 (40%), Positives = 326/519 (62%), Gaps = 15/519 (2%)

Query: 49   LQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIF 108
             + DL V + LI+  ++      ++ A  LFD IP  ++V + +M  GY +++    A+ 
Sbjct: 1173 FETDLFVSSALIDMYSK---CGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALL 1229

Query: 109  LFVELL-------NSGLLP-DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLY 160
            LF + L       +   +P D     S+L AC+ V  + + EG  +H F +K G + ++ 
Sbjct: 1230 LFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEG--VHGFVVKKGFDGSIG 1287

Query: 161  VCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL-QER 219
            V  TL++ YA+C     ++++F+ + E   +S+N++I  YA+S    EAL +F  + +  
Sbjct: 1288 VGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHV 1347

Query: 220  NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
             ++   VT+ + L +CA  G+L  GK IH+ + K  L+  V V T++IDM+ KCGR++ A
Sbjct: 1348 GVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMA 1407

Query: 280  VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
               FD M  K+ ++W+AM+  Y  HG+  +++ +F +M++A V P+ ITF+ +L ACSH 
Sbjct: 1408 KKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHA 1467

Query: 340  GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRT 399
            GLV+EGW++F +M+ KY I PGI+HYGCMVDL GRAG L+EAY  I  + +K   ++W +
Sbjct: 1468 GLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGS 1527

Query: 400  LLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459
            LL +C  H N+ L +   +++FELD  + G YV+LSNL A AGRW DV+ +R LMK+R +
Sbjct: 1528 LLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQL 1587

Query: 460  LKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDME 519
            +K PG S +E+   V  F  GD  H +   + K L++L  EL+ +GYVP+ + V H D++
Sbjct: 1588 VKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLH-DVD 1646

Query: 520  DEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +EEKEI LR HSEKLA+ FG++N+ PGTTI ++KNLRVC
Sbjct: 1647 EEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVC 1685



 Score =  253 bits (645), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 140/405 (34%), Positives = 217/405 (53%), Gaps = 36/405 (8%)

Query: 15  PKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEH 74
           P+       AL LL  C +F+ L+QIHA  I++ L ND  +  KLI+  +   T   + +
Sbjct: 21  PRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYS---THGRIAY 77

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A LLF +I  P    +N + R  + +    +A+ L+  ++  G+  D ++FP ++KAC  
Sbjct: 78  AILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKAC-- 135

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS--------------------- 173
               +++ GK +H   IK G + +++V   LI+ Y +C                      
Sbjct: 136 TNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWT 195

Query: 174 ----------DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKP 223
                     D++ ARRIF+ I    VVS+ A+I  Y R+ +P EAL LF+ +Q  N+ P
Sbjct: 196 TVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFP 255

Query: 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVF 283
            + TM+S + +C  +G L LG+ IH+Y  K  ++  V + TALIDM++KCG + DA+ VF
Sbjct: 256 NEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVF 315

Query: 284 DNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVD 343
           + M  K    W++MI +   HG G +++ +F EM +  V PD ITF+G+L AC H   V 
Sbjct: 316 ETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVK 375

Query: 344 EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388
           EG  YF  M   YGI P  +HY CM +L  R+  LDEA++   E+
Sbjct: 376 EGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEV 420



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 189/371 (50%), Gaps = 22/371 (5%)

Query: 65   QNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYS 124
            + P + S   A   +  + + ++  +N++    +R    + A+  F  L   GL+P   S
Sbjct: 1085 RRPVSLSSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSS 1144

Query: 125  FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
            FP  +K+C+ +    L  G+  H  A   G  ++L+V + LI++Y++C  ++ AR +F+ 
Sbjct: 1145 FPCTIKSCSALCD--LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDE 1202

Query: 185  ISEPCVVSYNAIITAYARSSRPNEALSLFR-------ELQERNLKPTD-VTMLSALSSCA 236
            I    VVS+ ++IT Y ++ + + AL LF+       E+++ N  P D V M+S LS+C+
Sbjct: 1203 IPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACS 1262

Query: 237  LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSA 296
             +    + + +H ++ K G D  + V   L+D +AKCG+   +  VFD M  KD  +W++
Sbjct: 1263 RVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNS 1322

Query: 297  MIVAYATHGQGHKSILMFEEMMK-AQVSPDEITFLGLLYACSHTGLVDEG---WNYFYSM 352
            MI  YA  G   +++ +F  M++   V  + +T   +L AC+H G +  G    +    M
Sbjct: 1323 MIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKM 1382

Query: 353  RDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGL 412
              +Y +  G      ++D+  + GR++ A +  D +  K+    W  +++    H   G 
Sbjct: 1383 DLEYNVCVGTS----IIDMYCKCGRVEMAKKTFDRMKEKNVK-SWTAMVAGYGMH---GR 1434

Query: 413  AKQVIERIFEL 423
            AK+ ++  +++
Sbjct: 1435 AKEALDIFYKM 1445


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/542 (39%), Positives = 328/542 (60%), Gaps = 10/542 (1%)

Query: 20  NTPNALSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N    +S+L  C+S   LK   QI    I+    +D  V T L++   +     S++ AH
Sbjct: 412 NRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAK---CGSLKDAH 468

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +F++I + ++V +N M   Y + +    A+  F  LL  G+ P+  +F S+L  C    
Sbjct: 469 RVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCK--S 526

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
           +++LE GK +H   +K GL S+L+V   L++++  C D+ +A+ +F ++ +  +VS+N I
Sbjct: 527 SDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTI 586

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           I  + +  +   A   F+ +QE  +KP  +T    L++CA   +L  G+ +H  I +   
Sbjct: 587 IAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAF 646

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
           D  V V T LI M+ KCG ++DA  VF  +  K+  +W++MI  YA HG+G +++ +F +
Sbjct: 647 DCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQ 706

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M +  V PD ITF+G L AC+H GL++EG ++F SM++ + I P ++HYGCMVDL GRAG
Sbjct: 707 MQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPRMEHYGCMVDLFGRAG 765

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSN 436
            L+EA  FI ++ ++    +W  LL +C  H N+ LA++  ++  ELD +  G +VILSN
Sbjct: 766 LLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSN 825

Query: 437 LCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDE 496
           + A AG W++V  +RK+M DRGV+K PG S IEV+  V  F+S D  H  + ++   L+ 
Sbjct: 826 IYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELER 885

Query: 497 LVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLR 556
           L  E++ +GYVPDT  V H D+ED EKE AL YHSE+LAIT+GLL TPP T I + KNLR
Sbjct: 886 LHMEMRQLGYVPDTRYVLH-DVEDNEKEQALFYHSERLAITYGLLKTPPLTPIVISKNLR 944

Query: 557 VC 558
           VC
Sbjct: 945 VC 946



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 214/386 (55%), Gaps = 12/386 (3%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           +LL  C  F+ L   ++I+    K+ +Q D+ +   LIN   +   T S   A  +FD +
Sbjct: 115 ALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTIS---AKQIFDDM 171

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
            E D+  +N +  GY +      A  L  +++   + PD  +F S+L ACA   A  +++
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACA--DARNVDK 229

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G++L+   +K G +++L+V T LIN++ +C D+  A ++F+N+    +V++ ++IT  AR
Sbjct: 230 GRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLAR 289

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
             R  +A +LF+ ++E  ++P  V  +S L +C    +L+ GK +H  +K+ G D  + V
Sbjct: 290 HGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYV 349

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
            TA++ M+ KCG ++DA+ VFD + G++  +W+AMI  +A HG+  ++ L F +M+++ +
Sbjct: 350 GTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGI 409

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYF-YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
            P+ +TF+ +L ACS    +  G     + +   YG    ++    ++ +  + G L +A
Sbjct: 410 EPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR--TALLSMYAKCGSLKDA 467

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSH 407
           +R  +++  K   + W  ++++   H
Sbjct: 468 HRVFEKIS-KQNVVAWNAMITAYVQH 492



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 118/229 (51%), Gaps = 2/229 (0%)

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           NA++   +++ + NEA+ +   +   +++    T  + L  C    +L  G+ I+ +IKK
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
            G+   + +   LI+M+AKCG    A  +FD+M  KD  +W+ ++  Y  HG   ++  +
Sbjct: 139 SGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
            E+M++  V PD+ TF+ +L AC+    VD+G    Y++  K G    +     ++++  
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKG-RELYNLILKAGWDTDLFVGTALINMHI 257

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
           + G + +A +  D LP +   + W ++++  + H     A  + +R+ E
Sbjct: 258 KCGDIGDATKVFDNLPTRDL-VTWTSMITGLARHGRFKQACNLFQRMEE 305


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/542 (39%), Positives = 328/542 (60%), Gaps = 10/542 (1%)

Query: 20  NTPNALSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N    +S+L  C+S   LK   QI    I+    +D  V T L++   +     S++ AH
Sbjct: 412 NRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAK---CGSLKDAH 468

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +F++I + ++V +N M   Y + +    A+  F  LL  G+ P+  +F S+L  C    
Sbjct: 469 RVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCK--S 526

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
           +++LE GK +H   +K GL S+L+V   L++++  C D+ +A+ +F ++ +  +VS+N I
Sbjct: 527 SDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTI 586

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           I  + +  +   A   F+ +QE  +KP  +T    L++CA   +L  G+ +H  I +   
Sbjct: 587 IAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAF 646

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
           D  V V T LI M+ KCG ++DA  VF  +  K+  +W++MI  YA HG+G +++ +F +
Sbjct: 647 DCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQ 706

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M +  V PD ITF+G L AC+H GL++EG ++F SM++ + I P ++HYGCMVDL GRAG
Sbjct: 707 MQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPRMEHYGCMVDLFGRAG 765

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSN 436
            L+EA  FI ++ ++    +W  LL +C  H N+ LA++  ++  ELD +  G +VILSN
Sbjct: 766 LLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSN 825

Query: 437 LCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDE 496
           + A AG W++V  +RK+M DRGV+K PG S IEV+  V  F+S D  H  + ++   L+ 
Sbjct: 826 IYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELER 885

Query: 497 LVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLR 556
           L  E++ +GYVPDT  V H D+ED EKE AL YHSE+LAIT+GLL TPP T I + KNLR
Sbjct: 886 LHMEMRQLGYVPDTRYVLH-DVEDNEKEQALFYHSERLAITYGLLKTPPLTPIVISKNLR 944

Query: 557 VC 558
           VC
Sbjct: 945 VC 946



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 214/386 (55%), Gaps = 12/386 (3%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           +LL  C  F+ L   ++I+    K+ +Q D+ +   LIN   +   T S   A  +FD +
Sbjct: 115 ALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTIS---AKQIFDDM 171

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
            E D+  +N +  GY +      A  L  +++   + PD  +F S+L ACA   A  +++
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACA--DARNVDK 229

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G++L+   +K G +++L+V T LIN++ +C D+  A ++F+N+    +V++ ++IT  AR
Sbjct: 230 GRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLAR 289

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
             R  +A +LF+ ++E  ++P  V  +S L +C    +L+ GK +H  +K+ G D  + V
Sbjct: 290 HGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYV 349

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
            TA++ M+ KCG ++DA+ VFD + G++  +W+AMI  +A HG+  ++ L F +M+++ +
Sbjct: 350 GTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGI 409

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYF-YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
            P+ +TF+ +L ACS    +  G     + +   YG    ++    ++ +  + G L +A
Sbjct: 410 EPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR--TALLSMYAKCGSLKDA 467

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSH 407
           +R  +++  K   + W  ++++   H
Sbjct: 468 HRVFEKIS-KQNVVAWNAMITAYVQH 492



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 118/229 (51%), Gaps = 2/229 (0%)

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           NA++   +++ + NEA+ +   +   +++    T  + L  C    +L  G+ I+ +IKK
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
            G+   + +   LI+M+AKCG    A  +FD+M  KD  +W+ ++  Y  HG   ++  +
Sbjct: 139 SGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
            E+M++  V PD+ TF+ +L AC+    VD+G    Y++  K G    +     ++++  
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKG-RELYNLILKAGWDTDLFVGTALINMHI 257

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
           + G + +A +  D LP +   + W ++++  + H     A  + +R+ E
Sbjct: 258 KCGDIGDATKVFDNLPTRDL-VTWTSMITGLARHGRFKQACNLFQRMEE 305


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/532 (41%), Positives = 326/532 (61%), Gaps = 12/532 (2%)

Query: 33  SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI-PEPDIVLF- 90
           S    KQIHA  ++  +     +L K + F         + +A  +  R+ P   +  F 
Sbjct: 27  SLAAAKQIHARALRAGVPTSHPLLAKHLLFHLAALRAPPLRYAVAVLSRLLPHGPLDPFP 86

Query: 91  -NTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCF 149
            NT+ R  + S  P  A+ L    L    LPD +++P L++ACA +   AL EG+ LH  
Sbjct: 87  LNTVLRIAAGSPRPRVALELHRRRLA---LPDTHTYPPLIQACARL--LALREGECLHAE 141

Query: 150 AIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN--ISEPCVVSYNAIITAYARSSRPN 207
           A K G  + ++V  +L++LY  C   E+A ++F+   +    +VS+N+++ ++A + RPN
Sbjct: 142 AAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPN 201

Query: 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267
           E L++F E+   +  P   T++S L++CA  G+L LG+ +H Y++K GL +   V+ ALI
Sbjct: 202 EVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALI 261

Query: 268 DMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           D++AKCG ++DA  +F+ M  G+   +W+++IV  A +G G +++ +F  M + ++ P E
Sbjct: 262 DLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTE 321

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
           IT +G+LYACSH GLVD+G+ YF  M++ YGI P I+H GCMVDLLGRAGR++EAY +I 
Sbjct: 322 ITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYII 381

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWED 446
            +P++   ++WRTLL SC+ H  L L K   ER+ ELD  H GDYV+LSNL A  G W D
Sbjct: 382 TMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWAD 441

Query: 447 VDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGY 506
           V  LRK M    V K PG S +E+ N V EF  GD  H  S  + + L E+ + L+  GY
Sbjct: 442 VHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGY 501

Query: 507 VPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +P TS V   D+E+EEKE AL YHSE+LAI F LL + PG  IR++KNLR+C
Sbjct: 502 IPRTSNV-LADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMC 552


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/538 (38%), Positives = 332/538 (61%), Gaps = 11/538 (2%)

Query: 26   SLLPRC---TSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
            S+L  C   T+ R  +++HA  IKT  +  + + T+LI    +      +  A  + D +
Sbjct: 482  SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNK---CRCLGDARRVLDEM 538

Query: 83   PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
            PE ++V +  M  GYS+      A+ LFVE+L SG  P++++F ++L +C    +   + 
Sbjct: 539  PERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCT--SSSGFQL 596

Query: 143  GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
            G+Q+H   IK    S+++V ++L+++YA+   +  ARR+F+ + E  VVS  AII+ YA+
Sbjct: 597  GRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQ 656

Query: 203  SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
                 EAL LFR LQ   ++   VT  S L++ + L +LD G+ +H ++ +  L  YV +
Sbjct: 657  LGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVL 716

Query: 263  NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA-Q 321
              +LIDM++KCG L  +  +FD+M  +   +W+AM+V Y+ HG G +++ +F+ M +  +
Sbjct: 717  QNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENK 776

Query: 322  VSPDEITFLGLLYACSHTGLVDEGWNYFYSM-RDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
            V PD +TFL +L  CSH G+ D G   FY M   K G  P I+HYGC+VDL GRAGR++E
Sbjct: 777  VKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEE 836

Query: 381  AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
            A+ FI ++P + T  +W +LL +C  H N+ + + V  R+ E++  + G+YVILSNL A 
Sbjct: 837  AFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYAS 896

Query: 441  AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
            AGRW+DV  +R+LMK++ V+K PG S IE++  +  F + D  H    ++   + EL  +
Sbjct: 897  AGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIK 956

Query: 501  LKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +K  GYVP+ S V + D++DE+KE  L+ HSEKLA+ FGL+ TP GT +R++KNLR+C
Sbjct: 957  IKEAGYVPELSCVLY-DVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRIC 1013


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/606 (35%), Positives = 344/606 (56%), Gaps = 61/606 (10%)

Query: 4   TPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFC 63
            P+  +  SP P L  + P        C + R LKQ+HA+ IKT    D     ++I FC
Sbjct: 7   NPNRTLNFSPQPPLILSKP-----FTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFC 61

Query: 64  TQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKT---PIRAIFLFVELLNSGLL- 119
               ++  +++A  +F ++PEP+   +NT+ R  + +        A+ LF  +L  G + 
Sbjct: 62  AF--SSRDIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVK 119

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS------ 173
           P+ ++FPS+LKACA   A  L EGKQ+H   +K G + + +V + L+ +Y  C+      
Sbjct: 120 PNRFTFPSVLKACA--RASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAY 177

Query: 174 -----------------------------------------DVEAARRIFENISEPCVVS 192
                                                    D+++A+ +F+ +    VVS
Sbjct: 178 SLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVS 237

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +N +I+ YA++    EA++LF+E+Q  N+ P  VT++S L + A +G+L+LGKWIH Y  
Sbjct: 238 WNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAG 297

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           K  ++    + +AL+DM++KCG +D A+ VF+ +  ++   WSA+I A+A HG+   +I+
Sbjct: 298 KNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAII 357

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
            F  M KA V+P+++ ++G+L ACSH GLV+EG ++F  M    G+ P I+HYGCMVDLL
Sbjct: 358 HFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLL 417

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432
           GRAG L+EA   I  +PI+   ++W+ LL +C  H NL + ++V E + EL     G YV
Sbjct: 418 GRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYV 477

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
            LSNL A  G WE V  +R  MK   + K PGCS IE++ ++ EF   D  HS + ++Q 
Sbjct: 478 ALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQA 537

Query: 493 ALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVV 552
            L E+  +L+  GY P+T  V   + +++E+  AL+YHSEK+A+ FGL++T P   +++V
Sbjct: 538 MLGEMSMKLRSNGYRPNTLEVFL-NTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIV 596

Query: 553 KNLRVC 558
           KNLR+C
Sbjct: 597 KNLRIC 602


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/538 (38%), Positives = 328/538 (60%), Gaps = 12/538 (2%)

Query: 25  LSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFD 80
           +S+LP C   + L   +++HA  ++      +NV T +++ +C       +++ A  +FD
Sbjct: 331 VSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCK----CGAVDSARKVFD 386

Query: 81  RIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEAL 140
            + + + V +N M +GY+ +     A+ LF  ++  G+   D S  + L AC  +G   L
Sbjct: 387 GMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGF--L 444

Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY 200
           +EG+++H   +++GL SN+ V   LI +Y +C   + A ++F+ +     VS+NA+I   
Sbjct: 445 DEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGC 504

Query: 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
            ++    +A+ LF  +Q  N+KP   T++S + + A +      +WIH Y  +  LD+ V
Sbjct: 505 TQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDV 564

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            V TALIDM+AKCGR+  A S+F++   +    W+AMI  Y +HG G  ++ +FEEM  +
Sbjct: 565 YVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSS 624

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
              P+E TFL +L ACSH GLVDEG  YF SM++ YG+ PG++HYG MVDLLGRAG+L E
Sbjct: 625 GKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHE 684

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           A+ FI ++P++    ++  +L +C  H N+ LA++  +RIFEL+   G  +V+L+N+ A 
Sbjct: 685 AWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYAN 744

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
           A  W+DV  +R  M+ +G+ K PG S +++ N +  F+SG   H  + D+   L +L++E
Sbjct: 745 ASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIEE 804

Query: 501 LKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +K VGYVPDT  +H  D+ED+ K   L  HSEKLAI +GL+ T PGTTI++ KNLRVC
Sbjct: 805 IKAVGYVPDTDSIH--DVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVC 860



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 122/398 (30%), Positives = 204/398 (51%), Gaps = 27/398 (6%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS-GLLPDDYSFPSLLKACA 133
           A  +FDR+P  D V +N +  GY+R+     A+ + V +    G  PD  +  S+L ACA
Sbjct: 279 ARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACA 338

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
              A+AL   +++H FA++ G +  + V T ++++Y +C  V++AR++F+ + +   VS+
Sbjct: 339 --DAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSW 396

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           NA+I  YA +    EAL+LF+ +    +  TDV++L+AL +C  LG LD G+ +HE + +
Sbjct: 397 NAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVR 456

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
            GL+  V V  ALI M+ KC R D A  VFD +  K   +W+AMI+    +G    ++ +
Sbjct: 457 IGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRL 516

Query: 314 FEEMMKAQVSPDEITFLGLLYACSH-TGLVDEGWNYFYSMR-----DKYGIVPGIKHYGC 367
           F  M    V PD  T + ++ A +  +  +   W + YS+R     D Y +         
Sbjct: 517 FSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTA------- 569

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
           ++D+  + GR+  A    +    +   I W  ++    SH   G  K  +E +FE   S 
Sbjct: 570 LIDMYAKCGRVSIARSLFNSARDRHV-ITWNAMIHGYGSH---GSGKVAVE-LFEEMKSS 624

Query: 428 G---GDYVILSNL--CARAGRW-EDVDYLRKLMKDRGV 459
           G    +   LS L  C+ AG   E  +Y   + +D G+
Sbjct: 625 GKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGL 662



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 208/439 (47%), Gaps = 36/439 (8%)

Query: 116 SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDV 175
           SG  P   +F SLLK CA      L  G+ +H      GL+      T L N+YA+C   
Sbjct: 219 SGSGPVLRTFTSLLKLCA--ARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRP 276

Query: 176 EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN-LKPTDVTMLSALSS 234
             ARR+F+ +     V++NA++  YAR+     A+ +   +QE +  +P  VT++S L +
Sbjct: 277 GDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPA 336

Query: 235 CALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAW 294
           CA   +L   + +H +  + G D+ V V+TA++D++ KCG +D A  VFD M  +++ +W
Sbjct: 337 CADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSW 396

Query: 295 SAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD 354
           +AMI  YA +G   +++ +F+ M+   V   +++ L  L+AC   G +DEG    + +  
Sbjct: 397 NAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEG-RRVHELLV 455

Query: 355 KYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAK 414
           + G+   +     ++ +  +  R D A +  DEL  K T + W  ++  C+ + +   A 
Sbjct: 456 RIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYK-TRVSWNAMILGCTQNGSSEDAV 514

Query: 415 QVIERIFELDDSHGGDYVILSNLCARA-------GRWEDVDYLRKLMKDRGVLKVPGCSS 467
           ++  R+ +L++     + ++S + A A        RW    Y  +L  D+ V  +     
Sbjct: 515 RLFSRM-QLENVKPDSFTLVSIIPALADISDPLQARWIH-GYSIRLHLDQDVYVLTALID 572

Query: 468 IEVN----NVVREFFSGDG----------VHSY-STDLQKALDELVKELKMVGYVPDT-- 510
           +       ++ R  F+             +H Y S    K   EL +E+K  G VP+   
Sbjct: 573 MYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETT 632

Query: 511 -----SLVHHGDMEDEEKE 524
                S   H  + DE +E
Sbjct: 633 FLSVLSACSHAGLVDEGQE 651


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/515 (39%), Positives = 316/515 (61%), Gaps = 34/515 (6%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +FD     ++V +N M  GY+R K   ++  LF+E+   G+ P+  +   +L AC+ 
Sbjct: 161 ARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSK 220

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           +  + LE GK ++ +     +  NL +   LI+++A C +++ A+ +F+N+    V+S+ 
Sbjct: 221 L--KDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWT 278

Query: 195 AIITAYA-------------------------------RSSRPNEALSLFRELQERNLKP 223
           +I+T +A                               R +R  EAL+LFRE+Q  N+KP
Sbjct: 279 SIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKP 338

Query: 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVF 283
            + TM+S L++CA LG+L+LG+W+  YI K  +     V  ALIDM+ KCG +  A  VF
Sbjct: 339 DEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVF 398

Query: 284 DNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVD 343
             M  KD   W+AMIV  A +G G +++ MF  M++A ++PDEIT++G+L AC+H G+V+
Sbjct: 399 KEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVE 458

Query: 344 EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
           +G ++F SM  ++GI P + HYGCMVDLLGRAGRL+EA+  I  +P+K   I+W +LL +
Sbjct: 459 KGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGA 518

Query: 404 CSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVP 463
           C  H N+ LA+   ++I EL+  +G  YV+L N+ A   RWE++  +RKLM +RG+ K P
Sbjct: 519 CRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTP 578

Query: 464 GCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEK 523
           GCS +E+N  V EF +GD  H  S ++   L+ ++++L   GY PDTS V   D+ +E+K
Sbjct: 579 GCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQDLIKAGYSPDTSEVFL-DLGEEDK 637

Query: 524 EIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           E AL  HSEKLAI + L+++ PG TIR+VKNLR+C
Sbjct: 638 ETALYRHSEKLAIAYALISSGPGITIRIVKNLRMC 672



 Score =  211 bits (537), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 124/395 (31%), Positives = 213/395 (53%), Gaps = 35/395 (8%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           +SLL +C S   LKQIH+ TIK  L +D     ++I FC  + +   M +A  +FD IP+
Sbjct: 11  ISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHES-GKMIYARQVFDAIPQ 69

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
           P + ++NTM +GYSR   P   + +++ +L S + PD ++FP LLK        AL+ GK
Sbjct: 70  PTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFT--RNMALQYGK 127

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
            L   A+K G +SNL+V    I++++ C  V+ AR++F+      VV++N +++ Y R  
Sbjct: 128 VLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVK 187

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
           +  ++  LF E+++R + P  VT++  LS+C+ L  L+ GK I++YI    +++ + +  
Sbjct: 188 QFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILEN 247

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ------------------ 306
            LIDM A CG +D+A SVFDNM  +D  +W++++  +A  GQ                  
Sbjct: 248 VLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVS 307

Query: 307 ------GH-------KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
                 G+       +++ +F EM  + V PDE T + +L AC+H G ++ G  +  +  
Sbjct: 308 WTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELG-EWVKTYI 366

Query: 354 DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388
           DK  I         ++D+  + G + +A +   E+
Sbjct: 367 DKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEM 401


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/545 (38%), Positives = 333/545 (61%), Gaps = 19/545 (3%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQ------NPTTSSMEHAHLL 78
           L LL   ++   L Q  A  +K+ L  +  VLT+L            +P  ++     LL
Sbjct: 26  LRLLAASSTPTSLLQSVAFLLKSGLHANSLVLTRLFAASASAAPALLDPLVTA-----LL 80

Query: 79  FDRIPEPDIVLFNTMARGYSRS---KTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
              +P  D  L NT+ R ++ S      +RA   F  +L   ++P+ ++FP LLKACA +
Sbjct: 81  RPSVP-LDAFLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAAL 139

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD--VEAARRIFENISEPCVVSY 193
                + G Q H  A+K G  ++ YV  TLI++Y+      +  AR +F+ + +   V++
Sbjct: 140 PGSP-DVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTW 198

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           +A+I  Y R    ++A+ LFRE+Q   ++  +VT++  L++   LG+L+L +W+  ++++
Sbjct: 199 SAMIGGYVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVER 258

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
            G+ K V +  ALID  AKCG +D AV+VF+ M  +   +W+++I A A  G+G +++ +
Sbjct: 259 EGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRV 318

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           FEEM  A V PD++ F+G+L ACSH G+VDEG  YF +M+ +YGI P I+HYGCMVD+ G
Sbjct: 319 FEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFG 378

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI 433
           RAG ++ A  F+  +PI+  P++WR+L+S+C +H  L L + +   +     +H  +Y++
Sbjct: 379 RAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIM 438

Query: 434 LSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKA 493
           LSN+ A   RW++   +R+ M  RG+ KVPGCS +E++  V EF +GD  H    D+ + 
Sbjct: 439 LSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRM 498

Query: 494 LDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVK 553
           ++E+ +EL+ VG++  TS V   D+++E+KE AL++HSEKLAI F LL TPPGT +RVVK
Sbjct: 499 VEEMARELRRVGHIAATSEVLL-DLDEEDKEGALQWHSEKLAIAFALLRTPPGTQVRVVK 557

Query: 554 NLRVC 558
           NLRVC
Sbjct: 558 NLRVC 562


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/512 (40%), Positives = 310/512 (60%), Gaps = 34/512 (6%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           LF+ + E D+V ++ +  GY ++     A+ +F+E+  +G+  D+    S+L ACA +  
Sbjct: 260 LFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHL-- 317

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA--------------------------- 170
             ++ GK +H   I++G+ S + +   LI++Y+                           
Sbjct: 318 SIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMI 377

Query: 171 ----ECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV 226
               +C  VE AR +F+ + E  +VS++A+I+ YA+    +E L+LF E+Q   ++P + 
Sbjct: 378 SGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDET 437

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
            ++S +S+C  L +LD GKW+H YI+K GL   V + T L+DM+ KCG +++A+ VF+ M
Sbjct: 438 ILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGM 497

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
             K   +W+A+I+  A +G   +S+ MF EM    V P+EITF+G+L AC H GLVDEG 
Sbjct: 498 EEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGR 557

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
            +F SM +K+GI P +KHYGCMVDLLGRAG L+EA + I+ +P+      W  LL +C  
Sbjct: 558 CHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKK 617

Query: 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCS 466
           H +  + ++V  ++ EL   H G +V+LSN+ A  G WEDV  +R +MK +GV+K PGCS
Sbjct: 618 HGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCS 677

Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
            IE N VV EF +GD  H +   ++  L+E+ K LKM GY PDT+ V   D+++EEKE  
Sbjct: 678 LIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSL-DIDEEEKETT 736

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           L  HSEKLAI FGLL   P T IR++KNLR+C
Sbjct: 737 LFRHSEKLAIAFGLLTISPPTPIRIMKNLRIC 768



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/495 (24%), Positives = 226/495 (45%), Gaps = 107/495 (21%)

Query: 28  LPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDI 87
           L  C + +   +I +  I T   +D    ++L+ F T +P    ++++  +FDRI   + 
Sbjct: 48  LHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIG-LDYSLQIFDRIENSNG 106

Query: 88  VLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLH 147
            ++NTM R Y +S +  +A+ L+  ++ + + PD+Y++P +++ACA    E    GK++H
Sbjct: 107 FMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEF--GGKEIH 164

Query: 148 CFAIKLGLNSNLYVCTTLINL-------------------------------YAECSDVE 176
              +K+G +S++YV  TLIN+                               Y +  DVE
Sbjct: 165 DHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVE 224

Query: 177 AARRIFENI-------------------------------SEPCVVSYNAIITAYARSSR 205
            A+ IF+ +                                E  +VS++A+I+ Y ++  
Sbjct: 225 EAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGM 284

Query: 206 PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTA 265
             EAL +F E+    ++  +V ++S LS+CA L  +  GK IH  + + G++ YV +  A
Sbjct: 285 YEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNA 344

Query: 266 LIDMHA-------------------------------KCGRLDDAVSVFDNMSGKDTQAW 294
           LI M++                               KCG ++ A ++FD M  KD  +W
Sbjct: 345 LIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSW 404

Query: 295 SAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSMR 353
           SA+I  YA H    +++ +F EM   Q+ PDE   + ++ AC+H   +D+G W + Y  +
Sbjct: 405 SAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRK 464

Query: 354 D--KYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
           +  K  ++ G      ++D+  + G ++ A    + +  K     W  L+   + +   G
Sbjct: 465 NGLKVNVILGT----TLLDMYMKCGCVENALEVFNGMEEKGVSS-WNALIIGLAVN---G 516

Query: 412 LAKQVIERIFELDDS 426
           L ++ ++   E+ ++
Sbjct: 517 LVERSLDMFSEMKNN 531



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 139/265 (52%), Gaps = 6/265 (2%)

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130
           S+E A  LFD +PE DIV ++ +  GY++       + LF E+    + PD+    S++ 
Sbjct: 385 SVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVIS 444

Query: 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV 190
           AC  + A  L++GK +H +  K GL  N+ + TTL+++Y +C  VE A  +F  + E  V
Sbjct: 445 ACTHLAA--LDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGV 502

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK-WIHE 249
            S+NA+I   A +     +L +F E++   + P ++T +  L +C  +G +D G+     
Sbjct: 503 SSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFAS 562

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQGH 308
            I+K+G++  VK    ++D+  + G L++A  + ++M    D   W A++ A   HG   
Sbjct: 563 MIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTE 622

Query: 309 KSILMFEEMMKAQVSPDEITFLGLL 333
               +  ++++ Q  PD   F  LL
Sbjct: 623 MGERVGRKLIELQ--PDHDGFHVLL 645


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/572 (38%), Positives = 320/572 (55%), Gaps = 44/572 (7%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           + L     S + LK +HA  ++  L  D  +L K++ F      T+   ++H +F +  E
Sbjct: 14  IRLFQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTN---YSHRIFHQTKE 70

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
           P+I LFNTM  G   + +   +I ++  +   GL PD ++FP LLKACA +    L  G 
Sbjct: 71  PNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKL--GI 128

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY---- 200
           +LH   +K G  S+ +V T+L++LY +C  ++ A ++F++I E  V ++ AII+ Y    
Sbjct: 129 KLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVG 188

Query: 201 ----------------------------------ARSSRPNEALSLFRELQERNLKPTDV 226
                                             A +  P EAL LF ++     +P   
Sbjct: 189 KCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCY 248

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
            M+  L +CA LG+L+LG W    + +        + TALIDM+AKCGR+D A  VF  M
Sbjct: 249 AMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGM 308

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
             KD   W+A I   A  G    +  +F +M K+ + PD  TF+GLL AC+H GLVDEG 
Sbjct: 309 RKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGR 368

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
            YF SM   + + P I+HYGCMVDLLGRAG LDEA++ +  +P+++  I+W  LL  C  
Sbjct: 369 QYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRL 428

Query: 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCS 466
           H +  L + V++++  L+ S+ G+YV+LSN+ + + +WED   +R +M +RG+ KVPG S
Sbjct: 429 HRDTQLVEGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYS 488

Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
            IEV+ VV EF  GD  H  S  +   L ELVK+LK  GYVP T  V   D+E+EEKE  
Sbjct: 489 WIEVDGVVHEFLVGDTSHPLSEKIYAKLGELVKDLKASGYVPTTDYVLF-DIEEEEKEHF 547

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +  HSEKLAI FGL++T P   IRVVKNLRVC
Sbjct: 548 IGCHSEKLAIAFGLISTAPNDKIRVVKNLRVC 579


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 229/575 (39%), Positives = 326/575 (56%), Gaps = 44/575 (7%)

Query: 23  NALSL--LPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFD 80
           N L L  L  C S   +KQ HA  I T L        KL+     + +  S+ +AH LFD
Sbjct: 15  NQLQLFSLESCKSMNQIKQTHAHLITTGLILHPITANKLLKVLIAS-SFGSLSYAHQLFD 73

Query: 81  RIPEPDIVLFNTMARGY----SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
           +IP+PD+ ++NTM + +    + S   +R     V +  SG LP+ Y+F  + KAC    
Sbjct: 74  QIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRV--SGFLPNRYTFVFVFKACG--N 129

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE------------- 183
              + EG+Q+   AIK+GL SNL+V   +I +YA    V+ ARR+F+             
Sbjct: 130 GLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIM 189

Query: 184 ------------------NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTD 225
                              +SE  VVS+  II  Y +     EAL LF E+ +    P +
Sbjct: 190 IGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNE 249

Query: 226 VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285
            T+ SAL++CA L +LD G+WIH YI K  +    ++  +L+DM+AKCG +D A  VF +
Sbjct: 250 FTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHD 309

Query: 286 MSGKDTQAW--SAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVD 343
             G   + W  +AMI  YA HG+  ++I +FE+M   +VSP+++TF+ LL ACSH  LV+
Sbjct: 310 EYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVE 369

Query: 344 EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
           EG  YF SM   YGI P I+HYGCMVDLLGR+G L EA   +  +P+     +W  LL +
Sbjct: 370 EGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGA 429

Query: 404 CSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVP 463
           C  H ++   +++ + I ELD  H G +V+L+NL + +G+W++   +R+ ++  G  K P
Sbjct: 430 CRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTP 489

Query: 464 GCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEK 523
           GCSSIE+N V  +F  GD  H  +  L   LDE+  +LK  GYVP+   V     ++E+K
Sbjct: 490 GCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDK 549

Query: 524 EIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           E AL  HSEKLAI FGL+NTPPGT IR+VKNLRVC
Sbjct: 550 ETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVC 584


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/519 (40%), Positives = 326/519 (62%), Gaps = 15/519 (2%)

Query: 49   LQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIF 108
             + DL V + LI+  ++      ++ A  LFD IP  ++V + +M  GY +++    A+ 
Sbjct: 2046 FETDLFVSSALIDMYSK---CGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALL 2102

Query: 109  LFVELLNSGL-LPDDYSFP-------SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLY 160
            LF + L     + D  + P       S+L AC+ V  + + EG  +H F +K G + ++ 
Sbjct: 2103 LFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEG--VHGFVVKKGFDGSIG 2160

Query: 161  VCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL-QER 219
            V  TL++ YA+C     ++++F+ + E   +S+N++I  YA+S    EAL +F  + +  
Sbjct: 2161 VGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHV 2220

Query: 220  NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
             ++   VT+ + L +CA  G+L  GK IH+ + K  L+  V V T++IDM+ KCGR++ A
Sbjct: 2221 GVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMA 2280

Query: 280  VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
               FD M  K+ ++W+AM+  Y  HG+  +++ +F +M++A V P+ ITF+ +L ACSH 
Sbjct: 2281 KKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHA 2340

Query: 340  GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRT 399
            GLV+EGW++F +M+ KY I PGI+HYGCMVDL GRAG L+EAY  I  + +K   ++W +
Sbjct: 2341 GLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGS 2400

Query: 400  LLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459
            LL +C  H N+ L +   +++FELD  + G YV+LSNL A AGRW DV+ +R LMK+R +
Sbjct: 2401 LLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQL 2460

Query: 460  LKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDME 519
            +K PG S +E+   V  F  GD  H +   + K L++L  EL+ +GYVP+ + V H D++
Sbjct: 2461 VKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLH-DVD 2519

Query: 520  DEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +EEKEI LR HSEKLA+ FG++N+ PGTTI ++KNLRVC
Sbjct: 2520 EEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVC 2558



 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 143/415 (34%), Positives = 221/415 (53%), Gaps = 38/415 (9%)

Query: 5   PSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCT 64
           PS  I  +P   +      AL LL  C +F+ L+QIHA  I++ L ND  +  KLI+  +
Sbjct: 13  PSKNIPLTPRGNI--RAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYS 70

Query: 65  QNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYS 124
              T   + +A LLF +I  P    +N + R  + +    +A+ L+  ++  G+  D ++
Sbjct: 71  ---THGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFT 127

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS----------- 173
           FP ++KAC      +++ GK +H   IK G + +++V   LI+ Y +C            
Sbjct: 128 FPFVIKACT--NFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEK 185

Query: 174 --------------------DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLF 213
                               D++ ARRIF+ I    VVS+ A+I  Y R+ +P EAL LF
Sbjct: 186 MRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELF 245

Query: 214 RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273
           + +Q  N+ P + TM+S + +C  +G L LG+ IH+Y  K  ++  V + TALIDM++KC
Sbjct: 246 KRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKC 305

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
           G + DA+ VF+ M  K    W++MI +   HG G +++ +F EM +  V PD ITF+G+L
Sbjct: 306 GSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVL 365

Query: 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388
            AC H   V EG  YF  M   YGI P  +HY CM +L  R+  LDEA++   E+
Sbjct: 366 CACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEV 420



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 185/361 (51%), Gaps = 22/361 (6%)

Query: 75   AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
            A   +  + + ++  +N++    +R    + A+  F  L   GL+P   SFP  +K+C+ 
Sbjct: 1968 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSA 2027

Query: 135  VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
            +    L  G+  H  A   G  ++L+V + LI++Y++C  ++ AR +F+ I    VVS+ 
Sbjct: 2028 LCD--LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWT 2085

Query: 195  AIITAYARSSRPNEALSLFR-------ELQERNLKPTD-VTMLSALSSCALLGSLDLGKW 246
            ++IT Y ++ + + AL LF+       E+++ N  P D V M+S LS+C+ +    + + 
Sbjct: 2086 SMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEG 2145

Query: 247  IHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ 306
            +H ++ K G D  + V   L+D +AKCG+   +  VFD M  KD  +W++MI  YA  G 
Sbjct: 2146 VHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGL 2205

Query: 307  GHKSILMFEEMMK-AQVSPDEITFLGLLYACSHTGLVDEG---WNYFYSMRDKYGIVPGI 362
              +++ +F  M++   V  + +T   +L AC+H G +  G    +    M  +Y +  G 
Sbjct: 2206 SGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGT 2265

Query: 363  KHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
                 ++D+  + GR++ A +  D +  K+    W  +++    H   G AK+ ++  ++
Sbjct: 2266 S----IIDMYCKCGRVEMAKKTFDRMKEKNVKS-WTAMVAGYGMH---GRAKEALDIFYK 2317

Query: 423  L 423
            +
Sbjct: 2318 M 2318



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 152/324 (46%), Gaps = 45/324 (13%)

Query: 153  LGLNSNLYVCTTLINLYAECSD----------VEAARR--------IFENISEPCVVSYN 194
            L  + ++YVC  ++N Y EC D          V + R          ++ + +  V S+N
Sbjct: 1928 LSESPSIYVC--VVNFY-ECFDGITYNSILFGVPSGREDHSNLATWFYKYVDKSNVHSWN 1984

Query: 195  AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
            ++I   AR     EAL  F  L++  L PT  +    + SC+ L  L  G+  H+    +
Sbjct: 1985 SVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVF 2044

Query: 255  GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
            G +  + V++ALIDM++KCG+L DA ++FD +  ++  +W++MI  Y  + Q   ++L+F
Sbjct: 2045 GFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLF 2104

Query: 315  EEMMKAQ--------VSPDEITFLGLLYACSHTG--LVDEGWNYFYSMRDKYGIVPGIKH 364
            ++ ++ +        V  D +  + +L ACS      + EG + F     K G    I  
Sbjct: 2105 KDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVV---KKGFDGSIGV 2161

Query: 365  YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
               ++D   + G+   + +  D +  K   I W ++++  +     GL+ + +E +F   
Sbjct: 2162 GNTLMDAYAKCGQPLVSKKVFDWMEEKDD-ISWNSMIAVYAQS---GLSGEALE-VFHGM 2216

Query: 425  DSHGG---DYVILSNL---CARAG 442
              H G   + V LS +   CA AG
Sbjct: 2217 VRHVGVRYNAVTLSAVLLACAHAG 2240


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/593 (37%), Positives = 347/593 (58%), Gaps = 51/593 (8%)

Query: 1   MATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLI 60
           ++TT +      PP KL         L+ +  S   + QIHA  ++ +L   L+    ++
Sbjct: 16  LSTTATARFRLPPPEKLAV-------LIDKSQSVDEVLQIHAAILRHNLL--LHPRYPVL 66

Query: 61  NFCTQNPTTS--SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118
           N        S   + H+  LF +  +PD+ LF       S +    +A  L+V+LL+S +
Sbjct: 67  NLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEI 126

Query: 119 LPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD---- 174
            P++++F SLLK+C+       + GK +H   +K GL  + YV T L+++YA+  D    
Sbjct: 127 NPNEFTFSSLLKSCST------KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSA 180

Query: 175 ---------------------------VEAARRIFENISEPCVVSYNAIITAYARSSRPN 207
                                      VEAAR +F+++ E  +VS+N +I  YA+   PN
Sbjct: 181 QKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPN 240

Query: 208 EALSLFRE-LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
           +AL LF++ L E   KP ++T+++ALS+C+ +G+L+ G+WIH ++K   +   VKV T L
Sbjct: 241 DALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGL 300

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK-AQVSPD 325
           IDM++KCG L++AV VF++   KD  AW+AMI  YA HG    ++ +F EM     + P 
Sbjct: 301 IDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPT 360

Query: 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI 385
           +ITF+G L AC+H GLV+EG   F SM  +YGI P I+HYGC+V LLGRAG+L  AY  I
Sbjct: 361 DITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETI 420

Query: 386 DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWE 445
             + + +  +LW ++L SC  H +  L K++ E +  L+  + G YV+LSN+ A  G +E
Sbjct: 421 KNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYE 480

Query: 446 DVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVG 505
            V  +R LMK++G++K PG S+IE+ N V EF +GD  HS S ++   L ++ + +K  G
Sbjct: 481 GVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHG 540

Query: 506 YVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           YVP+T+ V   D+E+ EKE +L+ HSE+LAI +GL++T PG+ +++ KNLRVC
Sbjct: 541 YVPNTNTVLQ-DLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVC 592


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/585 (36%), Positives = 344/585 (58%), Gaps = 47/585 (8%)

Query: 12  SPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSS 71
           +PP       P  L+   R +S     ++H+  IK   ++DL V   LI+  +      +
Sbjct: 107 APPNNF--TFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYS---VFGN 161

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +  A  LFD     D+V +NTM +GY+    P  A+ LF E+ NSG+LPD+++F +L   
Sbjct: 162 LNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSV 221

Query: 132 CACVGAEALEEGKQLHCFAIK--LGLNSN---------LYVCTTLINL------------ 168
           C+ +    +  GKQ+H    K    ++SN         +Y    LIN+            
Sbjct: 222 CSVLNEPNV--GKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSK 279

Query: 169 -----------YAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
                      YA C ++  AR++F ++ E  V+S+ A+I+ Y+++ + +EAL LF+E++
Sbjct: 280 SAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEME 339

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWI-HEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
              +KP +VT+++ LS+CA LG+ DLGK + H+YI+    ++   +  A++DM+AKCG +
Sbjct: 340 ALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSI 399

Query: 277 DDAVSVFDNMSGKDTQ---AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
           D A+ +F  + GK+ +    +++MI   A HG G  +I +F E++   + PDE+TF+G+L
Sbjct: 400 DSALEIFRRV-GKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVL 458

Query: 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
            AC H+GL++EG   F SM + YGI P ++HYGCMVDLLGR G L+EAY  + ++P ++ 
Sbjct: 459 CACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEAN 518

Query: 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKL 453
            ++WR LLS+C +H N+ + +   +++ E++  HG  YV+LSN+ A A +WE+   +RK+
Sbjct: 519 SVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKV 578

Query: 454 MKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLV 513
           M+D G+ K PG S IE+   +  F + D  H    +++  L ++   LK  GYVP+T+ V
Sbjct: 579 MEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQV 638

Query: 514 HHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
              D+++EEKE  + YHSEKLA+ FGL+   P  TIR+VKNLR+C
Sbjct: 639 MF-DIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRIC 682



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 129/444 (29%), Positives = 227/444 (51%), Gaps = 41/444 (9%)

Query: 16  KLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           +     P++L LL  C SF+   QIHA TI   L + +  +++LI+F +   +   ++H+
Sbjct: 4   RFLLENPSSLCLLESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHS 63

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP-DDYSFPSLLKACAC 134
            LLF +I  P++ ++NTM RGYSRS  P  AI L++ ++  G+ P ++++FP LL +CA 
Sbjct: 64  RLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCAR 123

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           +   +LE G ++H   IK G  S+L+V   LI+LY+   ++  AR +F+      +VSYN
Sbjct: 124 L--SSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYN 181

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK- 253
            +I  YA  ++P  AL LF E+Q   + P + T ++  S C++L   ++GK IH  + K 
Sbjct: 182 TMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKN 241

Query: 254 -YGLDKYVKVNTALIDMHAKCGRLDDAVSV------------------------------ 282
              +D  + + +A++DM+AKCG ++ A  V                              
Sbjct: 242 LRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVAR 301

Query: 283 --FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG 340
             F++M  +D  +W+AMI  Y+  GQ  +++ +F+EM    + PDE+T + +L AC+  G
Sbjct: 302 KLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLG 361

Query: 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIK-STPILWRT 399
             D G   ++   +             ++D+  + G +D A      +     T  ++ +
Sbjct: 362 AFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNS 421

Query: 400 LLSSCSSHNNLGLAKQVIERIFEL 423
           +++  + H   GL +  I    EL
Sbjct: 422 MIAGLAQH---GLGETAITVFREL 442



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 148/302 (49%), Gaps = 10/302 (3%)

Query: 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA---ECSDVEAARRIFEN 184
           LL++C     ++ ++G Q+H   I  GL+  ++  + LI+ ++       ++ +R +F  
Sbjct: 15  LLESC-----KSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQ 69

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKP-TDVTMLSALSSCALLGSLDL 243
           I  P +  +N +I  Y+RS  P EA+ L+  +  + + P  + T    L+SCA L SL+ 
Sbjct: 70  IDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEP 129

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303
           G  +H +I K+G +  + V  ALI +++  G L+ A ++FD    +D  +++ MI  YA 
Sbjct: 130 GHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAE 189

Query: 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM-RDKYGIVPGI 362
             Q   ++ +F EM  + + PDE TF+ L   CS     + G      + ++   I   I
Sbjct: 190 VNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNI 249

Query: 363 KHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
                +VD+  + G ++ A R    +    +   W +++   +    + +A+++   + E
Sbjct: 250 LLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHE 309

Query: 423 LD 424
            D
Sbjct: 310 RD 311


>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Vitis vinifera]
          Length = 573

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/537 (40%), Positives = 333/537 (62%), Gaps = 13/537 (2%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKTHLQNDLNV---LTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S++ +CT+   +KQ+ A  + T  Q +L +    T+L+  C  +P+ + + +A  +   I
Sbjct: 6   SIIQKCTTLSHIKQVQAHLLTTG-QFNLRISPSRTRLLEHCALSPSPAYLPYAAHIHRHI 64

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           P P    FN + RG +R   P  A+     +L+    PD  +F   L A A   A AL E
Sbjct: 65  PHPSTNDFNALLRGLARGPHPTHALTFLSTILH----PDALTFSFSLIASA--RALALSE 118

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
             Q+H   ++ G ++++ + TTLI+ YA+C D+++A+R+F+ I    V ++NA+I   A+
Sbjct: 119 TSQIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALIAGLAQ 178

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
            S+ +EAL+LF  ++    K  ++++L AL++C+ LG+L  G+ +H  ++K  LD  V+V
Sbjct: 179 GSKSSEALALFNRMRAEGEKINEISVLGALAACSQLGALRAGEGVHACVRKMDLDINVQV 238

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
             A+IDM+AKCG  D    VF  M+ GK    W+ MI+A+A HG G +++ +FEEM K Q
Sbjct: 239 CNAVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEEMGKTQ 298

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           V  D +T+L +L AC+H GLV+EG   F  M  + G+   +KHYG +VDLLGRAGRL EA
Sbjct: 299 VEMDSVTYLAVLCACNHAGLVEEGVRLFDEMVGR-GVNRNVKHYGSVVDLLGRAGRLGEA 357

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
           YR I+ +PI    +LW++LL +C ++ N+ +A+    ++ E+  +  GD+V+LSN+ A  
Sbjct: 358 YRIINSMPIVPDVVLWQSLLGACKTYGNVEMAEMASRKLVEMGSNSCGDFVLLSNVYAAR 417

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
            RWEDV  +R+ MK R V KVPG S IEV  V+ +F +GD  H    ++   LDE+   +
Sbjct: 418 ERWEDVGRVREAMKSRDVRKVPGFSYIEVEGVIHKFVNGDQSHPDWREIYAKLDEIRFRI 477

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K  GYV +TSLV H D+ +E+KE AL +HSEKLA+ FGL++T  GT IRV KNLR+C
Sbjct: 478 KAFGYVAETSLVLH-DIGEEDKENALCHHSEKLAVAFGLISTSEGTPIRVNKNLRIC 533


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/553 (37%), Positives = 335/553 (60%), Gaps = 37/553 (6%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           + +H + +K+ + +D+ V   LI+ C    +   ++ A  +F  I E D+V +N+M  G+
Sbjct: 151 QSLHGMAVKSAVGSDVFVANSLIH-CYF--SCGDLDSACKVFTTIKEKDVVSWNSMINGF 207

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            +  +P +A+ LF ++ +  +     +   +L ACA +    LE G+Q+  +  +  +N 
Sbjct: 208 VQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKI--RNLEFGRQVCSYIEENRVNV 265

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPC---------------------------- 189
           NL +   ++++Y +C  +E A+R+F+ + E                              
Sbjct: 266 NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMP 325

Query: 190 ---VVSYNAIITAYARSSRPNEALSLFRELQ-ERNLKPTDVTMLSALSSCALLGSLDLGK 245
              +V++NA+I+AY ++ +PNEAL +F ELQ ++N+K   +T++S LS+CA +G+L+LG+
Sbjct: 326 QKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGR 385

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
           WIH YIKK+G+     V +ALI M++KCG L+ +  VF+++  +D   WSAMI   A HG
Sbjct: 386 WIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHG 445

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY 365
            G++++ MF +M +A V P+ +TF  +  ACSHTGLVDE  + F+ M   YGIVP  KHY
Sbjct: 446 CGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHY 505

Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
            C+VD+LGR+G L++A +FI+ +PI  +  +W  LL +C  H NL LA+    R+ EL+ 
Sbjct: 506 ACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEP 565

Query: 426 SHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHS 485
            + G +V+LSN+ A+ G+WE+V  LRK M+  G+ K PGCSSIE++ ++ EF SGD  H 
Sbjct: 566 RNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHP 625

Query: 486 YSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPP 545
            S  +   L E++++LK  GY P+ S V     E+E KE +L  HSEKLAI +GL++T  
Sbjct: 626 MSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEA 685

Query: 546 GTTIRVVKNLRVC 558
              IRV+KNLRVC
Sbjct: 686 PKVIRVIKNLRVC 698



 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 245/451 (54%), Gaps = 43/451 (9%)

Query: 12  SPPPKLCTNTPNA--LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTT 69
           S P +  TN   +  +SL+ RC S R LKQ H   I+T   +D    +KL      + + 
Sbjct: 19  SNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALS-SF 77

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN-SGLLPDDYSFPSL 128
           +S+E+A  +FD IP+P+   +NT+ R Y+    P+ +I+ F+++++ S   P+ Y+FP L
Sbjct: 78  ASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFL 137

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP 188
           +KA A V + +L  G+ LH  A+K  + S+++V  +LI+ Y  C D+++A ++F  I E 
Sbjct: 138 IKAAAEVSSLSL--GQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEK 195

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
            VVS+N++I  + +   P++AL LF++++  ++K + VTM+  LS+CA + +L+ G+ + 
Sbjct: 196 DVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVC 255

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFD------------------------ 284
            YI++  ++  + +  A++DM+ KCG ++DA  +FD                        
Sbjct: 256 SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYE 315

Query: 285 -------NMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM-MKAQVSPDEITFLGLLYAC 336
                  +M  KD  AW+A+I AY  +G+ ++++++F E+ ++  +  ++IT +  L AC
Sbjct: 316 AAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSAC 375

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           +  G ++ G  + +S   K+GI         ++ +  + G L+++    + +  K    +
Sbjct: 376 AQVGALELG-RWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-KRDVFV 433

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
           W  ++   + H   G   + ++  +++ +++
Sbjct: 434 WSAMIGGLAMH---GCGNEAVDMFYKMQEAN 461


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/539 (39%), Positives = 325/539 (60%), Gaps = 10/539 (1%)

Query: 20  NTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLF 79
           N    +S L  C +   ++Q+HA      +  ++ V  KLI F +      +++ A+ LF
Sbjct: 61  NPKFYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSY---YRALDDAYGLF 117

Query: 80  DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEA 139
           D +   D V ++ M  G+++    I     F EL+  G  PD+Y+ P +++AC     + 
Sbjct: 118 DGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACR--DLKN 175

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
           L+ G+ +H    K GL+ + +VC  L+++Y +C ++E AR +F+ + E  +V++  +I  
Sbjct: 176 LQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGG 235

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI--KKYGLD 257
           YA   + NE+L LF +++E  + P  V M++ + +CA LG++   + I +YI  KK+ LD
Sbjct: 236 YAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLD 295

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
             V + TA+IDM+AKCG ++ A  +FD M  K+  +WSAMI AY  HGQG K++ +F  M
Sbjct: 296 --VILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMM 353

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
           + + + PD+IT   LLYACSH GLV+EG  +F SM + Y +   +KHY C+VDLLGRAGR
Sbjct: 354 LSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGR 413

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437
           LDEA + I  + I+    LW   L +C +H ++ LA++    + EL   + G YV+LSN+
Sbjct: 414 LDEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNI 473

Query: 438 CARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDEL 497
            A AGRWEDV  +R LM  R + K PG + IEV+N   +F  GD  H  S ++ + L  L
Sbjct: 474 YANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSL 533

Query: 498 VKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLR 556
             +L++VGYVPDT+ V H D+++E K   L  HSEKLAI FGL+ TP  T IR++KNLR
Sbjct: 534 SNKLELVGYVPDTNFVLH-DVDEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLR 591



 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/530 (39%), Positives = 325/530 (61%), Gaps = 12/530 (2%)

Query: 32   TSFRGLKQIHA-VTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLF 90
            T+   ++Q+H   ++   LQN L V  KL+ F +      +++ A+ LFD +   D V +
Sbjct: 749  TNLTQVRQVHXQASVHGMLQN-LIVANKLVXFYSY---YRALDDAYGLFDGMCVRDSVSW 804

Query: 91   NTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFA 150
            + M  G+++    +     F EL+  G  PD+Y+ P +++AC     + L+ G+ +H   
Sbjct: 805  SVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACR--DLKNLQMGRLIHHIV 862

Query: 151  IKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEAL 210
             K GL+ + +VC  L+++Y +C ++E AR +F+ + E  +V++  +I  YA     NE+L
Sbjct: 863  YKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESL 922

Query: 211  SLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI--KKYGLDKYVKVNTALID 268
             LF +++E  + P  V M++ + +CA LG++   + I +YI  KK+ LD  V + TA+ID
Sbjct: 923  VLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLD--VILGTAMID 980

Query: 269  MHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT 328
            MHAKCG ++ A  +FD M  K+  +WSAMI AY  HGQG K++ +F  M+++ + P++IT
Sbjct: 981  MHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKIT 1040

Query: 329  FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388
             + LLYACSH GLV+EG  +F  M + Y +   +KHY C+VDLLGRAGRLDEA + I  +
Sbjct: 1041 LVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSM 1100

Query: 389  PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVD 448
              +    LW   L +C +H ++ LA++    + EL   + G Y++LSN+ A AGRWEDV 
Sbjct: 1101 TXEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVA 1160

Query: 449  YLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVP 508
             +R LM  R + K+PG + IEV+N   +F  GD  H  S ++ + L  L  +L++VGYVP
Sbjct: 1161 KIRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVP 1220

Query: 509  DTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            DT+ V H D+++E K   L  HSEKLAI FGL+ TP  T IR++KNLRVC
Sbjct: 1221 DTNFVLH-DVDEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLRVC 1269


>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/547 (36%), Positives = 330/547 (60%), Gaps = 11/547 (2%)

Query: 16  KLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           K+  N+    +++      + L+Q+HA  I T      ++LTKLI       +  ++ + 
Sbjct: 4   KVAANSAAYEAIVRAGPRVKQLQQVHAHLIVTGYGRSRSLLTKLITLAC---SARAIAYT 60

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
           HLLF  +P PD  LFN++ +  S+ + P+  +  +  +L+S + P +Y+F S++K+CA +
Sbjct: 61  HLLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADL 120

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
              AL  GK +HC A+  G   + YV   L+  Y++C D+E AR++F+ + E  +V++N+
Sbjct: 121 --SALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNS 178

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +++ + ++   +EA+ +F +++E   +P   T +S LS+CA  G++ LG W+H+YI   G
Sbjct: 179 LVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEG 238

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
           LD  VK+ TALI+++++CG +  A  VFD M   +  AW+AMI AY THG G +++ +F 
Sbjct: 239 LDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFN 298

Query: 316 EMM-KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
           +M       P+ +TF+ +L AC+H GLV+EG + +  M   Y ++PG++H+ CMVD+LGR
Sbjct: 299 KMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGR 358

Query: 375 AGRLDEAYRFIDELPI---KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
           AG LDEAY+FI +L      + P LW  +L +C  H N  L  ++ +R+  L+  + G +
Sbjct: 359 AGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHH 418

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           V+LSN+ A +G+ ++V ++R  M    + K  G S IEV N    F  GD  H  + ++ 
Sbjct: 419 VMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIY 478

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
           + L+ L+   K +GY P +  V H  +E+EEKE ALRYHSEKLA+ FGLL T     I +
Sbjct: 479 RYLETLISRCKEIGYAPVSEEVMH-QVEEEEKEFALRYHSEKLAVAFGLLKTVD-VAITI 536

Query: 552 VKNLRVC 558
           VKNLR+C
Sbjct: 537 VKNLRIC 543


>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Vitis vinifera]
          Length = 607

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/575 (38%), Positives = 352/575 (61%), Gaps = 27/575 (4%)

Query: 1   MATTPSPPITQSPPPKLCTNTPN------ALSLLPRCTSFRGLKQIHAVTIKT---HLQN 51
           +A   +PP   S  P   +N+ +       L  L  CT    LKQ+HA TI+T   H  N
Sbjct: 3   LAAVIAPP---SHLPHAISNSDSFTHHRRLLLFLNSCTCISQLKQLHAQTIRTTSSHHPN 59

Query: 52  DLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIR-AIFLF 110
              + +++++F     +   + +A  +F +I  P+  ++N + R  +RS    + AI L+
Sbjct: 60  TFFLYSRILHF----SSLHDLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALY 115

Query: 111 VELLNSG-LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLY 169
             +L  G ++ D ++FP +LKACA + A  L EG+Q+H   +KLG +S++Y+  +L++ Y
Sbjct: 116 HRMLEQGSVMQDKHTFPFVLKACAYLFA--LSEGEQIHAQILKLGFDSDVYINNSLVHFY 173

Query: 170 AECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTML 229
           A C  ++ A+ +F+ +SE  +VS+N +I A+ R    + AL+LF E+Q +  +P   T+ 
Sbjct: 174 ATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQ-KFFEPDGYTIQ 232

Query: 230 SALSSCALLGSLDLGKWIHEYI-KKYGLDKY--VKVNTALIDMHAKCGRLDDAVSVFDNM 286
           S  ++CA +GSL LG W H ++ KK+  D+   V +NT+L+DM+ KCG L+ A+ +F  M
Sbjct: 233 SIANACAGMGSLSLGMWAHVFLLKKFDADRVNDVLLNTSLVDMYCKCGSLELALQLFHRM 292

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDEITFLGLLYACSHTGLVDEG 345
             +D  +W++MI+ ++THG+   ++  F  M++ + + P+ ITF+G+L AC+H GLV EG
Sbjct: 293 PKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEG 352

Query: 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS 405
             YF  M  +Y I P ++HYGC+VDLL RAG +DEA   +  +P++   ++WR+LL +C 
Sbjct: 353 RRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACC 412

Query: 406 SHN-NLGLAKQVIERIFELDDSH-GGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVP 463
             N  + L++++  R+ E +     G YV+LS + A A RW DV  +RKLM D+GV+K P
Sbjct: 413 KQNAGVELSEEMARRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEP 472

Query: 464 GCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEK 523
           GCSSIE++ V  EFF+GD  H  + ++  ALD + + ++ VGY PD+S     D   + K
Sbjct: 473 GCSSIEIDGVAHEFFAGDTSHPQTEEIYSALDVIEERVERVGYSPDSSQAPMVDETIDGK 532

Query: 524 EIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           + +LR HSE+LAI FGLL T PG  IR+ KNLRVC
Sbjct: 533 QYSLRLHSERLAIAFGLLKTKPGMPIRIFKNLRVC 567


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/566 (37%), Positives = 329/566 (58%), Gaps = 36/566 (6%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           L LL  C++ R LK IHA  ++THL  D+   ++LI FC  + TT+ + +A  +  +I  
Sbjct: 21  LVLLECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCI-DSTTNLLHYAIRVASQIQN 79

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
           P++ ++N + RG S S+ P  +   +++ L  GLLPD+ + P L+KACA +  E    G 
Sbjct: 80  PNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQL--ENAPMGM 137

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           Q H  AIK G   + YV  +L+++YA   D+ AAR +F+ +    VVS+  +I  Y R  
Sbjct: 138 QTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCG 197

Query: 205 RPNEALSLFRELQERNLK-------------------------------PTDVTMLSALS 233
               A  LF  + ERNL                                  +  M+  +S
Sbjct: 198 DAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVIS 257

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
           SCA LG+L +G+  HEY+ +  L   + + TA++DM+A+CG ++ AV VF+ +  KD   
Sbjct: 258 SCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLC 317

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           W+A+I   A HG   K++  F EM K    P +ITF  +L ACSH G+V+ G   F SM+
Sbjct: 318 WTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMK 377

Query: 354 DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413
             +G+ P ++HYGCMVDLLGRAG+L +A +F+ ++P+K    +WR LL +C  H N+ + 
Sbjct: 378 RDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVG 437

Query: 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNV 473
           ++V + + E+   + G YV+LSN+ ARA +W+DV  +R++MKD+GV K PG S IE++  
Sbjct: 438 ERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGK 497

Query: 474 VREFFSGDGVHSYSTDLQKALDELV-KELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSE 532
           V EF  GD  H     +++  ++++  ++K+ GYV +T+     D+++EEKE AL  HSE
Sbjct: 498 VHEFTIGDKTHPEIEKIERIWEDIILPKIKLAGYVGNTAETMF-DIDEEEKEGALHRHSE 556

Query: 533 KLAITFGLLNTPPGTTIRVVKNLRVC 558
           KLAI +G++     T IR+VKNLRVC
Sbjct: 557 KLAIAYGIMKIRAPTPIRIVKNLRVC 582


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/537 (39%), Positives = 322/537 (59%), Gaps = 10/537 (1%)

Query: 25  LSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           +S+LP     + L+    IH    +   +  +NV T +++   +     S+  A L+F  
Sbjct: 247 VSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFK---CGSVRSARLVFKG 303

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +   ++V +NTM  GY+++     A   F+++L+ G+ P + S    L ACA +G   LE
Sbjct: 304 MSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGD--LE 361

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G+ +H    +  +  ++ V  +LI++Y++C  V+ A  +F N+    VV++NA+I  YA
Sbjct: 362 RGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYA 421

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++   NEAL+LF E+Q  ++KP   T++S +++ A L      KWIH    +  +DK V 
Sbjct: 422 QNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVF 481

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V TALID HAKCG +  A  +FD M  +    W+AMI  Y T+G G +++ +F EM    
Sbjct: 482 VCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGS 541

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           V P+EITFL ++ ACSH+GLV+EG  YF SM++ YG+ P + HYG MVDLLGRAGRLD+A
Sbjct: 542 VKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDA 601

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
           ++FI ++P+K    +   +L +C  H N+ L ++  + +F+LD   GG +V+L+N+ A A
Sbjct: 602 WKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASA 661

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
             W+ V  +R  M+ +G+ K PGCS +E+ N V  F+SG   H  S  +   L+ L  E+
Sbjct: 662 SMWDKVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEM 721

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K  GYVPDT+ +H  D+E++ KE  L  HSE+LAI FGLLNT  GT I + KNLRVC
Sbjct: 722 KAAGYVPDTNSIH--DVEEDVKEQLLSSHSERLAIAFGLLNTRHGTAIHIRKNLRVC 776



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/390 (29%), Positives = 204/390 (52%), Gaps = 14/390 (3%)

Query: 15  PKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSME 73
           P      P+A+ LL  CTS + L QI  + IK    N+    TKLI+ FC  N  T +  
Sbjct: 39  PSHVYRHPSAI-LLELCTSLKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAAR 97

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
               +F+ +     VL++TM +GY+++ T   A+  +  +    ++P  Y F  LL+   
Sbjct: 98  ----VFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQ--- 150

Query: 134 CVGAEALE--EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
            +  E L+   G+++H   I  G  SNL+  T ++NLYA+C  +E A ++FE + +  +V
Sbjct: 151 -LSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLV 209

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+N ++  YA++     A+ +  ++QE   KP  +T++S L + A L +L +G+ IH Y 
Sbjct: 210 SWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYA 269

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            + G +  V V TA++D + KCG +  A  VF  MS ++  +W+ MI  YA +G+  ++ 
Sbjct: 270 FRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAF 329

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
             F +M+   V P  ++ +G L+AC++ G ++ G  Y + + D+  I   +     ++ +
Sbjct: 330 ATFLKMLDEGVEPTNVSMMGALHACANLGDLERG-RYVHRLLDEKKIGFDVSVMNSLISM 388

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
             +  R+D A      L  K T + W  ++
Sbjct: 389 YSKCKRVDIAASVFGNLKHK-TVVTWNAMI 417


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/501 (40%), Positives = 314/501 (62%), Gaps = 9/501 (1%)

Query: 59  LINFCTQNPTTSSMEH-AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSG 117
           LIN          + H A  +FD++P+ ++V + TM   YS +K   +A+   V +L  G
Sbjct: 2   LINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREG 61

Query: 118 LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEA 177
           + P+ +++ S+L+AC     + L   +QLHC  IK+GL+S+++V + LI++Y+   ++E 
Sbjct: 62  VRPNMFTYSSVLRAC-----DGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELEN 116

Query: 178 ARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL 237
           A R+F+ +    +V +++II  +A++S  +EAL LF+ ++         T+ S L +C  
Sbjct: 117 ALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTG 176

Query: 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297
           L  L+LG+ +H ++ KY  D+ + +N AL+DM+ KCG L+DA +VF  M  KD  +WS M
Sbjct: 177 LALLELGRQVHVHVLKY--DQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTM 234

Query: 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG 357
           I   A +G   +++ +FE M    + P+ +T +G+L+ACSH GLV+EG  YF+SM++ +G
Sbjct: 235 IAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFG 294

Query: 358 IVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
           I PG +HYGCM+DLLGRAGRL EA   I+E+  +   + WR LL++C  H N+ +A    
Sbjct: 295 IDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAA 354

Query: 418 ERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREF 477
           ++I  LD    G YV+LSN+ A   RW DV  +R+ M +RG+ K PGCS IEV+  +  F
Sbjct: 355 KQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAF 414

Query: 478 FSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAIT 537
             GD  H    ++   L++L+ +L  VGYVPDT+ V   D+E E+ + +LRYHSEKLAI 
Sbjct: 415 ILGDRSHPQIREINIQLNQLIYKLMGVGYVPDTNFVLQ-DLEGEQMQDSLRYHSEKLAIV 473

Query: 538 FGLLNTPPGTTIRVVKNLRVC 558
           FGL++ P G TIR+ KNLR+C
Sbjct: 474 FGLMSLPRGQTIRIRKNLRIC 494



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 154/303 (50%), Gaps = 18/303 (5%)

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
           ++   LIN+Y +   +  A+ +F+ + +  VVS+  +I+AY+ +   ++AL     +   
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
            ++P   T  S L +C  L +L   + +H  I K GLD  V V +ALID++++ G L++A
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENA 117

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
           + VFD M   D   WS++I  +A +  G +++ +F+ M +A     + T   +L AC+  
Sbjct: 118 LRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGL 177

Query: 340 GLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
            L++ G   + + ++    ++        ++D+  + G L++A      + ++   I W 
Sbjct: 178 ALLELGRQVHVHVLKYDQDLILN----NALLDMYCKCGSLEDANAVFVRM-VEKDVISWS 232

Query: 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHG--GDYVILSNL---CARAGRWEDVDYLRKL 453
           T+++  + +   G +K+ + ++FE     G   +YV +  +   C+ AG  E+  Y    
Sbjct: 233 TMIAGLAQN---GYSKEAL-KLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHS 288

Query: 454 MKD 456
           MK+
Sbjct: 289 MKE 291



 Score = 46.6 bits (109), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 115/269 (42%), Gaps = 48/269 (17%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDR 81
           S+L  CT    L   +Q+H   +K     DL +   L++ +C       S+E A+ +F R
Sbjct: 169 SVLRACTGLALLELGRQVHVHVLK--YDQDLILNNALLDMYCK----CGSLEDANAVFVR 222

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           + E D++ ++TM  G +++     A+ LF  +   G+ P+  +   +L AC+  G   +E
Sbjct: 223 MVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAG--LVE 280

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           EG               LY   ++  L+                 +P    Y  +I    
Sbjct: 281 EG---------------LYYFHSMKELFG---------------IDPGREHYGCMIDLLG 310

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD-KYV 260
           R+ R +EA+ L  E++    +P  VT  + L++C +  ++D+   IH   +   LD +  
Sbjct: 311 RAGRLSEAVDLINEME---CEPDAVTWRALLNACRVHRNVDVA--IHAAKQILRLDPQDA 365

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGK 289
                L +++A   R +D   V   M+ +
Sbjct: 366 GTYVLLSNIYANTQRWNDVAEVRRTMTNR 394


>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 600

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/544 (40%), Positives = 333/544 (61%), Gaps = 17/544 (3%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQN---DLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           +SL+ RC   R L+  HA  ++  L        +   L +    + TT +  +A  LFD+
Sbjct: 24  VSLVRRCPGLRALRGAHAHFLRLRLPRLTYAFALSKLLASCAAASATTVASSYARALFDQ 83

Query: 82  IPEPDIVLFNTMARGYSRSKTPIR-----AIFLFVELLNSGL-LPDDYSFPSLLKACACV 135
           IPEP    +N++ R  S S +           L+  +L++G   P+ ++   +LKAC  +
Sbjct: 84  IPEPTAFCYNSLIRAVSGSGSSSNSGTTDTFLLYRRMLHAGSPAPNSFTLAFVLKACTAL 143

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE-PCVVSYN 194
           G     EG+QLH  A   GL  + YV T L+NLYA C +V  AR +F+ + E   +V+++
Sbjct: 144 G-----EGQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVALARNVFDGMVEDKNLVAWS 198

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           ++I  Y+R    NEAL LFR++Q   + P +VTM+S +S+CA  G+LDLGKW+H +I + 
Sbjct: 199 SMIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLGKWVHAFIDRK 258

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
           G+   ++++TALIDM+AKCG ++ A SVFD+M  +DT+AWSAMIV  A HG    ++ +F
Sbjct: 259 GITVDLELSTALIDMYAKCGLIERAKSVFDSMVERDTKAWSAMIVGLAMHGLAEDALGLF 318

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
             M++ +V P+ +TF+G+L AC+H+GLVD+G  Y+ +M++  GI   +++YGCMVDLL R
Sbjct: 319 SRMLQLKVRPNNVTFVGVLSACAHSGLVDDGRRYWCTMQE-LGIEASMENYGCMVDLLCR 377

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
           +G LDEA+ F+  +PI    ++WR LL +  S N + + +    R+FEL+  +  +YV+L
Sbjct: 378 SGLLDEAFSFVTGMPISPNSVIWRNLLVASKSSNRIDIVELASRRLFELEPQNPENYVLL 437

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
           SNL A   +W+ V Y+RK MKD  V  V GCSSIE+N  + +F   DG H     ++  L
Sbjct: 438 SNLYALNSQWDRVRYMRKKMKDNNVTVVAGCSSIEINGYLHKFVVSDGSHPEIKKIRLVL 497

Query: 495 DELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
            E+   +   G+ P T+ V H D+ +EEKE+AL  HSE+LAI +GLL T     IRVVKN
Sbjct: 498 REIADRVLCAGHKPWTAAVLH-DVVEEEKEVALCEHSERLAIAYGLLKTKAPHVIRVVKN 556

Query: 555 LRVC 558
           LR C
Sbjct: 557 LRFC 560


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/537 (39%), Positives = 317/537 (59%), Gaps = 6/537 (1%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           P  L    R    R   +IH++ +K    +D+ V T L++   +     + + A  +FD 
Sbjct: 118 PFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVK---CDNFDDALKVFDD 174

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           IP+ ++V +  +  GY  S     AI  F +LL  GL PD +S   +L ACA +G     
Sbjct: 175 IPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGD--CT 232

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G+ +  +    G+  N++V T+L+++Y +C ++E A  IF  + E  +VS++ +I  YA
Sbjct: 233 SGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYA 292

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
            +  P +AL LF ++Q  NLKP   TM+  LS+CA LG+LDLG W    + +        
Sbjct: 293 FNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPV 352

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           + TALIDM++KCG +  A  +F  M  KD   W+AM+V  + +G       +F  + K  
Sbjct: 353 LGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHG 412

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           + PDE TF+GLL  C+H G V+EG  +F +M+  + + P I+HYGCMVDLLGRAG L+EA
Sbjct: 413 IRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEA 472

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
           ++ I+ +P+K   ++W  LL  C  H +  LA+QV++++ EL+  + G+YV LSN+ +  
Sbjct: 473 HQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGN 532

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
            RWE+ + +R  MK++ + K+  CS IE++ +V EF  GD  H  S  +   LDEL +EL
Sbjct: 533 HRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGREL 592

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K VG+VP T  V   D+E+EEKE  L YHSEKLA+ FGL+ +PP   IRVVKNLRVC
Sbjct: 593 KAVGHVPTTEFVLF-DIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVC 648



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 137/427 (32%), Positives = 225/427 (52%), Gaps = 20/427 (4%)

Query: 3   TTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINF 62
           T PS P+  S   ++     N L+       F  LK IHA  ++ HL  D N L  LI  
Sbjct: 5   TNPSSPVF-SKALEIKNYLSNGLNF------FNQLKHIHARLLRLHLDQD-NYLLNLILC 56

Query: 63  CTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDD 122
           C  +    S  ++ L+F ++ EP+I L+NTM RG         AI L+  +   G LP++
Sbjct: 57  CALD--FGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNN 114

Query: 123 YSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF 182
           ++ P +LKACA      +  G ++H   +K G + +++V T+L++LY +C + + A ++F
Sbjct: 115 FTIPFVLKACA--RKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVF 172

Query: 183 ENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242
           ++I +  VVS+ AIIT Y  S    EA+  F++L E  LKP   +++  L++CA LG   
Sbjct: 173 DDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCT 232

Query: 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYA 302
            G+WI  YI   G+ + V V T+L+DM+ KCG L+ A  +F  M  KD  +WS MI  YA
Sbjct: 233 SGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYA 292

Query: 303 THGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPG 361
            +G   +++ +F +M    + PD  T +G+L AC+  G +D G W      R+++   P 
Sbjct: 293 FNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPV 352

Query: 362 IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421
           +     ++D+  + G + +A+     +  K   ++W  ++   S +   G AK V   +F
Sbjct: 353 LG--TALIDMYSKCGSVTQAWEIFTAMK-KKDRVVWNAMMVGLSMN---GHAKAVFS-LF 405

Query: 422 ELDDSHG 428
            L + HG
Sbjct: 406 SLVEKHG 412


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/537 (39%), Positives = 317/537 (59%), Gaps = 6/537 (1%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           P  L    R    R   +IH++ +K    +D+ V T L++   +     + + A  +FD 
Sbjct: 118 PFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVK---CDNFDDALKVFDD 174

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           IP+ ++V +  +  GY  S     AI  F +LL  GL PD +S   +L ACA +G     
Sbjct: 175 IPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGD--CT 232

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G+ +  +    G+  N++V T+L+++Y +C ++E A  IF  + E  +VS++ +I  YA
Sbjct: 233 SGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYA 292

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
            +  P +AL LF ++Q  NLKP   TM+  LS+CA LG+LDLG W    + +        
Sbjct: 293 FNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPV 352

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           + TALIDM++KCG +  A  +F  M  KD   W+AM+V  + +G       +F  + K  
Sbjct: 353 LGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHG 412

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           + PDE TF+GLL  C+H G V+EG  +F +M+  + + P I+HYGCMVDLLGRAG L+EA
Sbjct: 413 IRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEA 472

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
           ++ I+ +P+K   ++W  LL  C  H +  LA+QV++++ EL+  + G+YV LSN+ +  
Sbjct: 473 HQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGN 532

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
            RWE+ + +R  MK++ + K+  CS IE++ +V EF  GD  H  S  +   LDEL +EL
Sbjct: 533 HRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGREL 592

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K VG+VP T  V   D+E+EEKE  L YHSEKLA+ FGL+ +PP   IRVVKNLRVC
Sbjct: 593 KAVGHVPTTEFVLF-DIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVC 648



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 136/427 (31%), Positives = 226/427 (52%), Gaps = 20/427 (4%)

Query: 3   TTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINF 62
           T+P+ P+  S   ++     N L+       F  LK IHA  ++ HL  D N L  LI  
Sbjct: 5   TSPTSPVF-SKALEIKNYLSNGLNF------FNQLKHIHARLLRLHLDQD-NYLLNLILC 56

Query: 63  CTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDD 122
           C  +    S  ++ L+F ++ EP+I L+NTM RG         AI L+  +   G LP++
Sbjct: 57  CALD--FGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNN 114

Query: 123 YSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF 182
           ++ P +LKACA      +  G ++H   +K G + +++V T+L++LY +C + + A ++F
Sbjct: 115 FTIPFVLKACA--RKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVF 172

Query: 183 ENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242
           ++I +  VVS+ AIIT Y  S    EA+  F++L E  LKP   +++  L++CA LG   
Sbjct: 173 DDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCT 232

Query: 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYA 302
            G+WI  YI   G+ + V V T+L+DM+ KCG L+ A  +F  M  KD  +WS MI  YA
Sbjct: 233 SGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYA 292

Query: 303 THGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPG 361
            +G   +++ +F +M    + PD  T +G+L AC+  G +D G W      R+++   P 
Sbjct: 293 FNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPV 352

Query: 362 IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421
           +     ++D+  + G + +A+     +  K   ++W  ++   S +   G AK V   +F
Sbjct: 353 LG--TALIDMYSKCGSVTQAWEIFTAMKRKDR-VVWNAMMVGLSMN---GHAKAVFS-LF 405

Query: 422 ELDDSHG 428
            L + HG
Sbjct: 406 SLVEKHG 412


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/547 (38%), Positives = 330/547 (60%), Gaps = 18/547 (3%)

Query: 21  TPNALSLLPRCTSFRGLKQIHAVTI------KTHLQNDLNVLTKLINFCTQNPTTSSMEH 74
            P+ ++++    +   L  +H   I      +   Q D+ + T +I+   +      +E 
Sbjct: 128 VPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAK---CGCVES 184

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +FDR+ E +++ ++ M   Y       +A+ LF  +L+SG+LPD  +  SLL AC+ 
Sbjct: 185 AREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACS- 243

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
              + L+ G+ +H    K GL+ + +VC  L+++Y +C ++E AR +F+ + E  +V++ 
Sbjct: 244 -DLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWT 302

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI--K 252
            +I  YA     NE+L LF +++E  + P  V M++ + +CA LG++   + I +YI  K
Sbjct: 303 VMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRK 362

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           K+ LD  V + TA+IDMHAKCG ++ A  +FD M  K+  +WSAMI AY  HGQG K++ 
Sbjct: 363 KFQLD--VILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALD 420

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           +F  M+++ + P++IT + LLYACSH GLV+EG  +F  M + Y +   +KHY C+VDLL
Sbjct: 421 LFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLL 480

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432
           GRAGRLDEA + I+ + ++    LW   L +C +H ++ LA++    + EL   + G Y+
Sbjct: 481 GRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYI 540

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
           +LSN+ A AGRWEDV   R LM  R + K+PG + IEV+N   +F  GD  H  S ++ +
Sbjct: 541 LLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYE 600

Query: 493 ALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRY-HSEKLAITFGLLNTPPGTTIRV 551
            L  L  +L++VGYVPDT+ V H    DEE +I + Y HSEKLAI FGL+ TP  T IR+
Sbjct: 601 MLKSLGNKLELVGYVPDTNFVLHD--VDEELKIGILYSHSEKLAIAFGLIATPEHTPIRI 658

Query: 552 VKNLRVC 558
           +KNLRVC
Sbjct: 659 IKNLRVC 665



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 105/321 (32%), Positives = 184/321 (57%), Gaps = 12/321 (3%)

Query: 93  MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
           M  G+++    I     F EL+  G  PD+Y+ P +++AC     + L+ G+ +H    K
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACR--DLKNLQMGRLIHHIVYK 58

Query: 153 LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL 212
            GL+ + +VC  L+++Y +C ++E AR +F+ + E  +V++  +I  YA   + NE+L L
Sbjct: 59  FGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVL 118

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI--KKYGLDKYVKVNTALIDMH 270
           F +++E  + P  V M++ + +CA LG++   + I +YI  KK+ LD  V + TA+IDM+
Sbjct: 119 FEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLD--VILGTAMIDMY 176

Query: 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           AKCG ++ A  +FD M  K+  +WSAMI AY  HGQG K++ +F  M+ + + PD+IT  
Sbjct: 177 AKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLA 236

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC--MVDLLGRAGRLDEAYRFIDEL 388
            LLYACS    +  G    + +  K+G+   + H+ C  +VD+ G+   +++A    D++
Sbjct: 237 SLLYACSDLKNLQMG-RLIHHIVYKFGL--DLDHFVCAALVDMYGKCREIEDARFLFDKM 293

Query: 389 PIKSTPILWRTLLSSCSSHNN 409
           P +   + W  ++   +   N
Sbjct: 294 PERDL-VTWTVMIGGYAECGN 313



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 208/401 (51%), Gaps = 19/401 (4%)

Query: 18  CTNTPNALSL---LPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSS 71
           C   P+  +L   +  C   + L+    IH +  K  L  D  V   L++   +      
Sbjct: 24  CGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVK---CRE 80

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +E A  LFD++ E D+V +  M  GY+       ++ LF ++   G++PD  +  +++ A
Sbjct: 81  IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFA 140

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           CA +GA  + + + +  +  +     ++ + T +I++YA+C  VE+AR IF+ + E  V+
Sbjct: 141 CAKLGA--MHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVI 198

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S++A+I AY    +  +AL LFR +    + P  +T+ S L +C+ L +L +G+ IH  +
Sbjct: 199 SWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIV 258

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            K+GLD    V  AL+DM+ KC  ++DA  +FD M  +D   W+ MI  YA  G  ++S+
Sbjct: 259 YKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESL 318

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW---NYFYSMRDKYGIVPGIKHYGCM 368
           ++F++M +  V PD++  + +++AC+  G + +     +Y    + +  ++ G      M
Sbjct: 319 VLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGT----AM 374

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
           +D+  + G ++ A    D +  K+  I W  ++++   H  
Sbjct: 375 IDMHAKCGCVESAREIFDRMEEKNV-ISWSAMIAAYGYHGQ 414


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/514 (40%), Positives = 312/514 (60%), Gaps = 26/514 (5%)

Query: 55  VLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL 114
           VLT LI+  ++      +  A LLF RI  PD++ +N M  G++ +     ++ LF ELL
Sbjct: 246 VLTGLISLYSK---CGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELL 302

Query: 115 NSG----------LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTT 164
            SG          L+P    F  L  AC+            +H F +K G+  N  V T 
Sbjct: 303 FSGERVSSSTIVGLIPLHSPFGHLHLACS------------IHGFCVKSGIILNPTVSTA 350

Query: 165 LINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT 224
              +Y + ++++ AR +F+   E  VV++NA+I+ Y ++     A+SLF+E+ +    P 
Sbjct: 351 FTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPN 410

Query: 225 DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFD 284
            VT+ + LS+CA LGSL  GKW+H  IK   L+  + V+TAL+DM+AKCG + +A  +FD
Sbjct: 411 AVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFD 470

Query: 285 NMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDE 344
           +MS K+T  W+ MI  Y  HG GH+++ ++ EM+    +P  +TFL +LYACSH GLV E
Sbjct: 471 SMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGE 530

Query: 345 GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSC 404
           G   F++M +KY I P I+HY CMVD+LGR+G+L++A  FI ++P++  P +W TLL +C
Sbjct: 531 GEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGAC 590

Query: 405 SSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPG 464
             H +  +A+   ER+FELD    G YV+LSN+ +    +     +R+++K R + K PG
Sbjct: 591 MIHKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPG 650

Query: 465 CSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKE 524
           C+ IEVN     F SGD  HS++TD+   L++L  +++ +GY  +T    H D+E+EEKE
Sbjct: 651 CTLIEVNGTPHVFVSGDRSHSHATDIYAKLEKLTGKMREMGYQAETVPALH-DVEEEEKE 709

Query: 525 IALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +A+  HSEKLAI FGL+ T PG  IR++KNLRVC
Sbjct: 710 LAVNVHSEKLAIAFGLITTEPGNEIRIIKNLRVC 743



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 194/371 (52%), Gaps = 7/371 (1%)

Query: 31  CTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLF 90
           C++ + L  +HA +I     +++ V + L++   +    S + +A  +FD +PE D VL+
Sbjct: 121 CSNDKHLMLLHAHSIIDGYGSNVFVGSALVDLYCK---FSRVVYARKVFDGMPERDTVLW 177

Query: 91  NTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFA 150
           NTM  G  ++     +I LF E++  G+  D  +  ++L A A +  + L+ G  + C A
Sbjct: 178 NTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAEL--QELKVGMGIQCLA 235

Query: 151 IKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEAL 210
           +K+G     YV T LI+LY++C DV  AR +F  I+ P +++YNA+I+ +  +     ++
Sbjct: 236 LKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSV 295

Query: 211 SLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270
            LFREL     + +  T++  +   +  G L L   IH +  K G+     V+TA   ++
Sbjct: 296 KLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIY 355

Query: 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
            K   +D A  +FD    K   AW+AMI  Y  +G    +I +F+EMMK + +P+ +T  
Sbjct: 356 NKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTIT 415

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
            +L AC+  G +  G  + + +     + P I     +VD+  + G + EA++  D +  
Sbjct: 416 TILSACAQLGSLSFG-KWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSE 474

Query: 391 KSTPILWRTLL 401
           K+T + W T++
Sbjct: 475 KNT-VTWNTMI 484



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 122/448 (27%), Positives = 213/448 (47%), Gaps = 18/448 (4%)

Query: 16  KLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTT-SSMEH 74
           KL  NT    SL+ + ++F  L Q HA  I    + DL  LTKL    TQ     S+  H
Sbjct: 9   KLSRNT--LFSLINKASTFPHLAQTHAQFILNGYRFDLATLTKL----TQKLFDFSATRH 62

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVEL-LNSGLLPDDYSFPSLLKACA 133
           A  LF  +P+PDI LFN + RG+S + +P  +I L+  L  N+ L PD++++   + AC+
Sbjct: 63  ARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACS 122

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
                 L     LH  +I  G  SN++V + L++LY + S V  AR++F+ + E   V +
Sbjct: 123 NDKHLML-----LHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLW 177

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           N +I    ++   ++++ LFRE+    ++    T+ + L + A L  L +G  I     K
Sbjct: 178 NTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALK 237

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
            G      V T LI +++KCG ++ A  +F  ++  D  A++AMI  +  +G    S+ +
Sbjct: 238 IGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKL 297

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           F E++ +       T +GL+   S  G +    +  +    K GI+           +  
Sbjct: 298 FRELLFSGERVSSSTIVGLIPLHSPFGHLHLACS-IHGFCVKSGIILNPTVSTAFTAIYN 356

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV- 432
           +   +D A    DE P K T + W  ++S  + + +   A  + + + + + +     + 
Sbjct: 357 KLNEIDLARHLFDESPEK-TVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTIT 415

Query: 433 -ILSNLCARAGRWEDVDYLRKLMKDRGV 459
            ILS  CA+ G      ++  L+K   +
Sbjct: 416 TILS-ACAQLGSLSFGKWVHHLIKSENL 442


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/571 (38%), Positives = 327/571 (57%), Gaps = 44/571 (7%)

Query: 23  NALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSS--MEHAHLLFD 80
            A+SLL  C++ R   ++HA  ++T L   L+   + + F  Q    +S  ++ +  L  
Sbjct: 291 RAVSLLTSCSTARRAAELHAAVLRTGL---LDATDRAVAFRLQRAYAASGRLDLSLALLR 347

Query: 81  RIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEAL 140
           R  +P  + + +    +S     + A+ L  ++L  GLLP  ++  + L AC       L
Sbjct: 348 RTRDPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLPAC-----RGL 402

Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN-ISEPCVVS------- 192
             G+ LH +A KL L  + YV T L+ +YA   D  AAR +F++ + +P VVS       
Sbjct: 403 SPGRALHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTC 462

Query: 193 ------------------------YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTM 228
                                   +NA+I  Y +  RPNEAL LFR +    ++P +VT+
Sbjct: 463 YADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTV 522

Query: 229 LSALSSCALLGSLDLGKWIHEYIKK-YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS 287
           +  LS+ A LG+++ GKW+H Y+K    +   V+V TALIDM+ KCG L DAV VF  + 
Sbjct: 523 VLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIG 582

Query: 288 GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN 347
            KD   W+AMI  YA HG   K++ MF +  +  + P +ITF+GLL ACSH+G+V+EG  
Sbjct: 583 DKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGRE 642

Query: 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
           +F SM  +YGI P I+HYGCMVDLLGRAG + EA+  +  + I    ++W +LL++C  H
Sbjct: 643 FFQSMEREYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLH 702

Query: 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSS 467
            N+ L +Q+ + +     ++ G Y++LSN+ A  G W +V  +R +MK  G+ K PGCSS
Sbjct: 703 KNMSLGQQIADYLVAKGLANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSS 762

Query: 468 IEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIAL 527
           IE++  V EF +GD  H  + ++   LD++   +K  G+VP T LV H D+++  KE AL
Sbjct: 763 IEIDREVYEFVAGDMSHPRTDEIYVMLDKMNGLVKEHGHVPQTELVLH-DLDEATKEKAL 821

Query: 528 RYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             HSEKLA+ FGL++T PG TI++VKNLR C
Sbjct: 822 AVHSEKLALAFGLISTQPGATIKIVKNLRAC 852


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/551 (38%), Positives = 321/551 (58%), Gaps = 37/551 (6%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           +H + IK  L +DL +L  LINF     ++ + + AH +F  +P  D+V +N M   ++ 
Sbjct: 195 LHGMVIKASLSSDLFILNSLINF---YGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFAL 251

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
              P +A+ LF E+    + P+  +  S+L ACA      LE G+ +  +    G   +L
Sbjct: 252 GGLPDKALLLFQEMEMKDVKPNVITMVSVLSACA--KKIDLEFGRWICSYIENNGFTEHL 309

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSY-------------------------- 193
            +   ++++Y +C  +  A+ +F  +SE  +VS+                          
Sbjct: 310 ILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHK 369

Query: 194 -----NAIITAYARSSRPNEALSLFRELQ-ERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
                NA+I+AY ++ +P  ALSLF E+Q  ++ KP +VT++ AL + A LG++D G WI
Sbjct: 370 WTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWI 429

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQG 307
           H YIKK+ ++    + T+L+DM+AKCG L+ A+ VF  +  KD   WSAMI A A +GQG
Sbjct: 430 HVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQG 489

Query: 308 HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367
             ++ +F  M++A + P+ +TF  +L AC+H GLV+EG   F  M   YGIVP I+HY C
Sbjct: 490 KAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVC 549

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
           +VD+ GRAG L++A  FI+++PI  T  +W  LL +CS H N+ LA+   + + EL+  +
Sbjct: 550 VVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCN 609

Query: 428 GGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYS 487
            G +V+LSN+ A+AG WE V  LRKLM+D  V K P CSSI+VN +V EF  GD  H +S
Sbjct: 610 HGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFS 669

Query: 488 TDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGT 547
             +   LDE+ ++ K +GY PD S +     ED   E +L  HSEKLAI FGL++T    
Sbjct: 670 QKIYSKLDEISEKFKPIGYKPDMSNLLQLSEEDNLMEQSLNVHSEKLAIAFGLISTASSQ 729

Query: 548 TIRVVKNLRVC 558
            IR+VKN+R+C
Sbjct: 730 PIRIVKNIRIC 740



 Score =  207 bits (528), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 129/436 (29%), Positives = 226/436 (51%), Gaps = 40/436 (9%)

Query: 21  TPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFD 80
           + N L  + +CT+   LKQIHA  ++T    D    +KL+       + S + +A  +F+
Sbjct: 72  STNILEFIDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLT-AYAISSCSCLIYAKNVFN 130

Query: 81  RIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS-GLLPDDYSFPSLLKACACVGAEA 139
           +IP+P++  +NT+ RGY+ S  P ++  +F+ +L+S    P+ ++FP L KA + +  + 
Sbjct: 131 QIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRL--KV 188

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
           L  G  LH   IK  L+S+L++  +LIN Y      + A R+F N+    VVS+NA+I A
Sbjct: 189 LHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINA 248

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
           +A    P++AL LF+E++ +++KP  +TM+S LS+CA    L+ G+WI  YI+  G  ++
Sbjct: 249 FALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEH 308

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKD----------------------------- 290
           + +N A++DM+ KCG ++DA  +F+ MS KD                             
Sbjct: 309 LILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPH 368

Query: 291 --TQAWSAMIVAYATHGQGHKSILMFEEM-MKAQVSPDEITFLGLLYACSHTGLVDEG-W 346
             T AW+A+I AY  +G+   ++ +F EM +     PDE+T +  L A +  G +D G W
Sbjct: 369 KWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHW 428

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
            + Y    K+ I         ++D+  + G L++A      +  K   + W  ++ + + 
Sbjct: 429 IHVYI--KKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYV-WSAMIGALAM 485

Query: 407 HNNLGLAKQVIERIFE 422
           +     A  +   + E
Sbjct: 486 YGQGKAALDLFSSMLE 501


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/521 (39%), Positives = 321/521 (61%), Gaps = 9/521 (1%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           + HA  I++ L+  +NV T +++ +C        +  A ++FD +P  + V +N M  GY
Sbjct: 182 EAHAFAIRSGLEELVNVATAILDAYCK----CGDIRAARVVFDWMPTKNSVSWNAMIDGY 237

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           +++     A+ LF  ++  G+   D S  + L+AC  +G   L+EG ++H   +++GL+S
Sbjct: 238 AQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGC--LDEGMRVHELLVRIGLDS 295

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           N+ V   LI +Y++C  V+ A  +F+ +     VS+NA+I   A++    +A+ LF  +Q
Sbjct: 296 NVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQ 355

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
             N+KP   T++S + + A +      +WIH Y  +  LD+ V V TALIDM+AKCGR++
Sbjct: 356 LENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVN 415

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            A  +F++   +    W+AMI  Y +HG G  ++ +FEEM    + P+E TFL +L ACS
Sbjct: 416 IARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACS 475

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H GLVDEG  YF SM++ YG+ PG++HYG MVDLLGRAG+LDEA+ FI ++P+     ++
Sbjct: 476 HAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVY 535

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             +L +C  H N+ LA++  ++IFEL    G  +V+L+N+ A A  W+DV  +R  M+  
Sbjct: 536 GAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKN 595

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           G+ K PG S I++ N +  F+SG   H  + ++   L +L++E+K VGYVPDT  +H  D
Sbjct: 596 GLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSIH--D 653

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +ED+ K   L  HSEKLAI FGL+ T PGTTI++ KNLRVC
Sbjct: 654 VEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVC 694



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 142/466 (30%), Positives = 227/466 (48%), Gaps = 37/466 (7%)

Query: 10  TQSPPPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQN 66
           +   PP L T T    SLL  C +   L   + +HA      + ++    T L N   + 
Sbjct: 52  SAGAPPVLRTFT----SLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKC 107

Query: 67  PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL-NSGLLPDDYSF 125
              +    A  +FDR+P  D V +N +  GY+R+     A+ + V +    G  PD  + 
Sbjct: 108 RRPAD---ARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITL 164

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
            S+L ACA   A A    ++ H FAI+ GL   + V T +++ Y +C D+ AAR +F+ +
Sbjct: 165 VSVLPACANARALAAC--REAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245
                VS+NA+I  YA++    EAL+LF  + E  +  TDV++L+AL +C  LG LD G 
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGM 282

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
            +HE + + GLD  V V  ALI M++KC R+D A  VFD +  +   +W+AMI+  A +G
Sbjct: 283 RVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNG 342

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSH-TGLVDEGWNYFYSMR-----DKYGIV 359
               ++ +F  M    V PD  T + ++ A +  +  +   W + YS+R     D Y + 
Sbjct: 343 CSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLT 402

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIER 419
                   ++D+  + GR++ A R +     +   I W  ++    SH   G  K  +E 
Sbjct: 403 -------ALIDMYAKCGRVNIA-RILFNSARERHVITWNAMIHGYGSH---GFGKAAVE- 450

Query: 420 IFELDDSHG---GDYVILSNL--CARAGRW-EDVDYLRKLMKDRGV 459
           +FE   S G    +   LS L  C+ AG   E  +Y   + +D G+
Sbjct: 451 LFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGL 496



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 120/449 (26%), Positives = 214/449 (47%), Gaps = 36/449 (8%)

Query: 106 AIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTL 165
           A+  FV + ++G  P   +F SLLK CA  G   L  G+ +H      G++S     T L
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGD--LATGRAVHAQLAARGIDSEALAATAL 100

Query: 166 INLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER-NLKPT 224
            N+YA+C     ARR+F+ +     V++NA++  YAR+     A+ +   +QE    +P 
Sbjct: 101 ANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPD 160

Query: 225 DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFD 284
            +T++S L +CA   +L   +  H +  + GL++ V V TA++D + KCG +  A  VFD
Sbjct: 161 SITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFD 220

Query: 285 NMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDE 344
            M  K++ +W+AMI  YA +G   +++ +F  M++  V   +++ L  L AC   G +DE
Sbjct: 221 WMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDE 280

Query: 345 GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSC 404
           G    + +  + G+   +     ++ +  +  R+D A    DEL  + T + W  ++  C
Sbjct: 281 GMR-VHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELD-RRTQVSWNAMILGC 338

Query: 405 SSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA-------GRWEDVDYLRKLMKDR 457
           + +     A ++  R+ +L++     + ++S + A A        RW    Y  +L  D+
Sbjct: 339 AQNGCSEDAVRLFTRM-QLENVKPDSFTLVSVIPALADISDPLQARWIH-GYSIRLHLDQ 396

Query: 458 GVLKVPG-------CSSIEVNNVV------REFFSGDG-VHSY-STDLQKALDELVKELK 502
            V  +         C  + +  ++      R   + +  +H Y S    KA  EL +E+K
Sbjct: 397 DVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMK 456

Query: 503 MVGYVPDT-------SLVHHGDMEDEEKE 524
            +G VP+        S   H  + DE +E
Sbjct: 457 SIGIVPNETTFLSVLSACSHAGLVDEGRE 485


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/521 (39%), Positives = 321/521 (61%), Gaps = 9/521 (1%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           + HA  I++ L+  +NV T +++ +C        +  A ++FD +P  + V +N M  GY
Sbjct: 182 EAHAFAIRSGLEELVNVATAILDAYCK----CGDIRAARVVFDWMPTKNSVSWNAMIDGY 237

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           +++     A+ LF  ++  G+   D S  + L+AC  +G   L+EG ++H   +++GL+S
Sbjct: 238 AQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGC--LDEGMRVHELLVRIGLDS 295

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           N+ V   LI +Y++C  V+ A  +F+ +     VS+NA+I   A++    +A+ LF  +Q
Sbjct: 296 NVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQ 355

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
             N+KP   T++S + + A +      +WIH Y  +  LD+ V V TALIDM+AKCGR++
Sbjct: 356 LENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVN 415

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            A  +F++   +    W+AMI  Y +HG G  ++ +FEEM    + P+E TFL +L ACS
Sbjct: 416 IARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACS 475

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H GLVDEG  YF SM++ YG+ PG++HYG MVDLLGRAG+LDEA+ FI ++P+     ++
Sbjct: 476 HAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVY 535

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             +L +C  H N+ LA++  ++IFEL    G  +V+L+N+ A A  W+DV  +R  M+  
Sbjct: 536 GAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKN 595

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           G+ K PG S I++ N +  F+SG   H  + ++   L +L++E+K VGYVPDT  +H  D
Sbjct: 596 GLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSIH--D 653

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +ED+ K   L  HSEKLAI FGL+ T PGTTI++ KNLRVC
Sbjct: 654 VEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVC 694



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 142/466 (30%), Positives = 227/466 (48%), Gaps = 37/466 (7%)

Query: 10  TQSPPPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQN 66
           +   PP L T T    SLL  C +   L   + +HA      + ++    T L N   + 
Sbjct: 52  SAGAPPVLRTFT----SLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKC 107

Query: 67  PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL-NSGLLPDDYSF 125
              +    A  +FDR+P  D V +N +  GY+R+     A+ + V +    G  PD  + 
Sbjct: 108 RRPAD---ARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITL 164

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
            S+L ACA   A A    ++ H FAI+ GL   + V T +++ Y +C D+ AAR +F+ +
Sbjct: 165 VSVLPACANARALAAC--REAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245
                VS+NA+I  YA++    EAL+LF  + E  +  TDV++L+AL +C  LG LD G 
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGM 282

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
            +HE + + GLD  V V  ALI M++KC R+D A  VFD +  +   +W+AMI+  A +G
Sbjct: 283 RVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNG 342

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSH-TGLVDEGWNYFYSMR-----DKYGIV 359
               ++ +F  M    V PD  T + ++ A +  +  +   W + YS+R     D Y + 
Sbjct: 343 CSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLT 402

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIER 419
                   ++D+  + GR++ A R +     +   I W  ++    SH   G  K  +E 
Sbjct: 403 -------ALIDMYAKCGRVNIA-RILFNSARERHVITWNAMIHGYGSH---GFGKAAVE- 450

Query: 420 IFELDDSHG---GDYVILSNL--CARAGRW-EDVDYLRKLMKDRGV 459
           +FE   S G    +   LS L  C+ AG   E  +Y   + +D G+
Sbjct: 451 LFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGL 496



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 123/457 (26%), Positives = 218/457 (47%), Gaps = 37/457 (8%)

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           +RS  P  A+  FV + ++G  P   +F SLLK CA  G   L  G+ +H      G++S
Sbjct: 36  ARSDLPA-ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGD--LATGRAVHAQLAARGIDS 92

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
                T L N+YA+C     ARR+F+ +     V++NA++  YAR+     A+ +   +Q
Sbjct: 93  EALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQ 152

Query: 218 ER-NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           E    +P  +T++S L +CA   +L   +  H +  + GL++ V V TA++D + KCG +
Sbjct: 153 EEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDI 212

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
             A  VFD M  K++ +W+AMI  YA +G   +++ +F  M++  V   +++ L  L AC
Sbjct: 213 RAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQAC 272

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
              G +DEG    + +  + G+   +     ++ +  +  R+D A    DEL  + T + 
Sbjct: 273 GELGCLDEGMR-VHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELD-RRTQVS 330

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA-------GRWEDVDY 449
           W  ++  C+ +     A ++  R+ +L++     + ++S + A A        RW    Y
Sbjct: 331 WNAMILGCAQNGCSEDAVRLFTRM-QLENVKPDSFTLVSVIPALADISDPLQARWIH-GY 388

Query: 450 LRKLMKDRGVLKVPG-------CSSIEVNNVV------REFFSGDG-VHSY-STDLQKAL 494
             +L  D+ V  +         C  + +  ++      R   + +  +H Y S    KA 
Sbjct: 389 SIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAA 448

Query: 495 DELVKELKMVGYVPDT-------SLVHHGDMEDEEKE 524
            EL +E+K +G VP+        S   H  + DE +E
Sbjct: 449 VELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGRE 485


>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
 gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/556 (37%), Positives = 340/556 (61%), Gaps = 6/556 (1%)

Query: 5   PSPPITQSPPP-KLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFC 63
           PS  + QS     L       L L+ +C S    KQ+H   +K  L  D    + ++  C
Sbjct: 15  PSKDLPQSSSELNLKQKEQEYLCLVKKCKSLEEFKQVHVQILKFGLFLDSFCSSSVLATC 74

Query: 64  TQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDY 123
             +   +SM++A  +F ++ EP    FNTM RGY  +     AI+L+ ++L   + PD++
Sbjct: 75  ALSDW-NSMDYACSIFQQLDEPTTFDFNTMIRGYVNNMNFENAIYLYNDMLQREVEPDNF 133

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           ++P +LKACA +    ++EG Q+H    KLGL  ++YV  +LIN+Y +C D+E +  IF 
Sbjct: 134 TYPVVLKACARLAV--IQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFR 191

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFREL-QERNLKPTDVTMLSALSSCALLGSLD 242
            + +  V S++AII A+A  +   E L+LF ++ +E   +  +  +++ LS+C  LG+  
Sbjct: 192 RMEQKSVASWSAIIAAHASLAMWWECLALFEDMSREGCWRAEESILVNVLSACTHLGAFH 251

Query: 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYA 302
           LG+  H  + K   +  V V T+L+DM+ KCG L   + +F NM+ K+  ++S +I    
Sbjct: 252 LGRCAHGSLLKNITELNVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGLG 311

Query: 303 THGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI 362
            HG G +++ +F EM++  + PD++T++ +L ACSH+GLVDEG + F  M+ +Y I P +
Sbjct: 312 LHGYGRQALQIFSEMVEEGLEPDDVTYVSVLSACSHSGLVDEGLDLFDKMKFEYRIEPTM 371

Query: 363 KHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
           +HYGCMVDL GRAG L+EA++ +  +PIK+  +LWR+LLS+C  H+NL L +   E +F 
Sbjct: 372 QHYGCMVDLKGRAGLLEEAFQLVQSMPIKANDVLWRSLLSACKVHDNLKLGEIAAENLFR 431

Query: 423 LDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDG 482
           L   +  DY++LSN+ ARA +WE+   +R  M +RG+++ PG S +EV + V +F S D 
Sbjct: 432 LSSHNPSDYLVLSNMYARAQQWENAAKIRTKMINRGLIQTPGYSLVEVKSKVYKFVSQDK 491

Query: 483 VHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLN 542
            +  S ++ K + ++  +L+  GY+PDTS V   D+++EEK   L+ HS+KLAI F L++
Sbjct: 492 SYCKSGNIYKMIHQMEWQLRFEGYMPDTSQVML-DVDEEEKGERLKGHSQKLAIAFALIH 550

Query: 543 TPPGTTIRVVKNLRVC 558
           T  G+ IR+++NLR+C
Sbjct: 551 TSQGSAIRIIRNLRMC 566


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/579 (37%), Positives = 328/579 (56%), Gaps = 43/579 (7%)

Query: 18  CTNTPNALSLLPRCTSFRGLKQ------IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSS 71
           C + PN  +      +   LK       +H + IK     DL +L  L+ F         
Sbjct: 120 CEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRF---YGACGD 176

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +  A  LF  I   D+V +N+M   +++   P  A+ LF+++    ++P+  +   +L A
Sbjct: 177 LSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSA 236

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           CA      LE G+ +  +  + G+  +L +C  ++++Y +C  V+ A+++F+ + E  V 
Sbjct: 237 CA--KKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVF 294

Query: 192 SY-------------------------------NAIITAYARSSRPNEALSLFRELQERN 220
           S+                               N +I+AY ++ +P EAL++F ELQ   
Sbjct: 295 SWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSK 354

Query: 221 L-KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
           + KP +VT++S LS+CA LG++DLG WIH YIK+ G+     + ++L+DM+AKCG L+ A
Sbjct: 355 IAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKA 414

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
           + VF ++  +D   WSAMI     HG+G  +I +F EM +A+V P+ +TF  +L ACSH 
Sbjct: 415 LEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHA 474

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRT 399
           GLVDEG  +F+ M   YG+VP +KHY CMVD+LGRAG L+EA   I+E+    +  +W  
Sbjct: 475 GLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGA 534

Query: 400 LLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459
           LL +CS H N+ L +   +++ +L+  + G  V+LSN+ A+ GRWE V  LRKLM+D  +
Sbjct: 535 LLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTEL 594

Query: 460 LKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDME 519
            K PGCSSIE N  V EF  GD  H  S+++   L+E+  +LK VGY P+ S +     E
Sbjct: 595 KKEPGCSSIEANGNVHEFLVGDNTHPLSSNIYSKLEEIATKLKSVGYEPNKSHLLQLIEE 654

Query: 520 DEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           D+ KE AL  HSEKLAI FGL+   P   IRVVKNLR+C
Sbjct: 655 DDLKEQALSLHSEKLAIAFGLVTLAPSQPIRVVKNLRIC 693



 Score =  228 bits (580), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 135/456 (29%), Positives = 245/456 (53%), Gaps = 47/456 (10%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           LS + +C+S + LK++HA  ++T L  D    +KL    +   + S++++A  LFD+IP+
Sbjct: 29  LSTIDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFT-ASALSSFSTLDYARNLFDQIPQ 87

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL-LPDDYSFPSLLKACACVGAEALEEG 143
           P++  +NT+ R Y+ S  P ++  +F++LL+    LP+ ++FP ++KA + + A  +  G
Sbjct: 88  PNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRV--G 145

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
             +H  AIKL    +LY+  +L+  Y  C D+  A R+F+ IS   VVS+N++I+A+A+ 
Sbjct: 146 TAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQG 205

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
           + P +AL LF +++  N+ P  VTM+  LS+CA    L+ G+W+  YI++ G+   + + 
Sbjct: 206 NCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLC 265

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDT-------------------------------Q 292
            A++DM+ KCG +DDA  +FD M  +D                                 
Sbjct: 266 NAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIA 325

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVS-PDEITFLGLLYACSHTGLVD-EGWNYFY 350
           AW+ +I AY  +G+  +++ +F E+  ++++ PDE+T +  L AC+  G +D  GW + Y
Sbjct: 326 AWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVY 385

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
             R+  GIV        +VD+  + G L++A      +  +   + W  +++    H   
Sbjct: 386 IKRE--GIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYV-WSAMIAGLGMH--- 439

Query: 411 GLAKQVIERIFELDDSH-GGDYVILSNL---CARAG 442
           G  K  I+  FE+ ++    + V  +N+   C+ AG
Sbjct: 440 GRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAG 475



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 152/309 (49%), Gaps = 14/309 (4%)

Query: 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA--E 171
           LN+ LL  ++   S +  C+     + ++ K++H   ++ GL  + +  + L    A   
Sbjct: 17  LNNNLLFRNHQILSTIDKCS-----SSKQLKEVHARMLRTGLFFDPFSASKLFTASALSS 71

Query: 172 CSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK-PTDVTMLS 230
            S ++ AR +F+ I +P + ++N +I AYA SS P ++  +F +L ++    P   T   
Sbjct: 72  FSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPF 131

Query: 231 ALSSCALLGSLDLGKWIHEYIKK--YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG 288
            + + + L +  +G  +H    K  +G+D Y+    +L+  +  CG L  A  +F  +S 
Sbjct: 132 VIKAASELKASRVGTAVHGMAIKLSFGMDLYIL--NSLVRFYGACGDLSMAERLFKGISC 189

Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNY 348
           KD  +W++MI A+A       ++ +F +M +  V P+ +T +G+L AC+    ++ G  +
Sbjct: 190 KDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFG-RW 248

Query: 349 FYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408
             S  ++ GI   +     M+D+  + G +D+A +  DE+P +     W  +L   +   
Sbjct: 249 VCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDV-FSWTIMLDGYAKMG 307

Query: 409 NLGLAKQVI 417
           +   A+ V 
Sbjct: 308 DYDAARLVF 316


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/581 (37%), Positives = 332/581 (57%), Gaps = 50/581 (8%)

Query: 21  TPNAL---SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSME 73
           +PNA+   SLL  C +   L   ++IH+   +  L+ D+ V   LI  +C  N    S++
Sbjct: 255 SPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCN----SVQ 310

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRS----KTPIRAIFLFVELLN-SGLLPDDYSFPSL 128
            A  +FDR+ + D++ ++ M  GY++S    K  I  +F  +E +   G+ P+  +F S+
Sbjct: 311 EAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSI 370

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGL-------------------------------NS 157
           L+AC   GA  LE+G+Q+H    K+G                                N 
Sbjct: 371 LRACTAHGA--LEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANK 428

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           N+   T+ +++Y +C D+ +A ++F  +    VVS+N +I  YA++    +   L   ++
Sbjct: 429 NVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMK 488

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
               +P  VT+++ L +C  L  L+ GK +H    K GL+    V T+LI M++KCG++ 
Sbjct: 489 AEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVA 548

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           +A +VFD MS +DT AW+AM+  Y  HG G +++ +F+ M+K +VSP+EIT   ++ ACS
Sbjct: 549 EARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACS 608

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
             GLV EG   F  M++ + + P  +HYGCMVDLLGRAGRL EA  FI  +P +    +W
Sbjct: 609 RAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVW 668

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             LL +C SHNN+ LA++    I EL+ S+   Y+ LSN+ A+AGRW+D   +R++M DR
Sbjct: 669 HALLGACKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDR 728

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           G+ K  G SSIE++  +  F + D  H     +   L+ L KE+K  GY PD   V H D
Sbjct: 729 GLKKDRGESSIEIDGRIHTFVAEDCAHPEIDAIHAELETLTKEMKEAGYTPDMRFVLH-D 787

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           ++D +KE AL +HSEKLAI +GLL TP GT IR++KNLRVC
Sbjct: 788 VDDVQKEKALCHHSEKLAIAYGLLKTPSGTPIRIMKNLRVC 828



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 111/397 (27%), Positives = 206/397 (51%), Gaps = 12/397 (3%)

Query: 29  PRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIV 88
            +   F   K +H    +  ++ D+ +   LINF ++    +S E    +F R+   D+V
Sbjct: 67  AKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQ---VFRRMTLRDVV 123

Query: 89  LFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHC 148
            +++M   Y+ +  P +A   F  + ++ + P+  +F S+LKAC       LE+G+++H 
Sbjct: 124 TWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACN--NYSILEKGRKIHT 181

Query: 149 FAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNE 208
               +G+ +++ V T LI +Y++C ++  A  +F  ++E  VVS+ AII A A+  + NE
Sbjct: 182 IVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNE 241

Query: 209 ALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALID 268
           A  L+ ++ +  + P  VT +S L+SC    +L+ G+ IH +I + GL+  + V  ALI 
Sbjct: 242 AFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALIT 301

Query: 269 MHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL-----MFEEMMKAQVS 323
           M+ KC  + +A  +FD MS +D  +WSAMI  YA  G   K  +     + E M +  V 
Sbjct: 302 MYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVF 361

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
           P+++TF+ +L AC+  G +++G    ++   K G          + ++  + G + EA +
Sbjct: 362 PNKVTFMSILRACTAHGALEQG-RQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQ 420

Query: 384 FIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
              ++  K+  + W + LS      +L  A++V   +
Sbjct: 421 VFSKMANKNV-VAWTSFLSMYIKCGDLSSAEKVFSEM 456



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 115/479 (24%), Positives = 223/479 (46%), Gaps = 51/479 (10%)

Query: 20  NTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N    LS+L  C ++  L   ++IH +     ++ D+ V T LI   T       +  A 
Sbjct: 156 NRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALI---TMYSKCGEISVAC 212

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +F ++ E ++V +  + +  ++ +    A  L+ ++L +G+ P+  +F SLL +C    
Sbjct: 213 EVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNT-- 270

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
            EAL  G+++H    + GL +++ V   LI +Y +C+ V+ AR IF+ +S+  V+S++A+
Sbjct: 271 PEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAM 330

Query: 197 ITAYARSSRPN-----EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           I  YA+S   +     E   L   ++   + P  VT +S L +C   G+L+ G+ IH  +
Sbjct: 331 IAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAEL 390

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSA--------------- 296
            K G +    + TA+ +M+AKCG + +A  VF  M+ K+  AW++               
Sbjct: 391 SKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAE 450

Query: 297 ----------------MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG 340
                           MI  YA +G   K   +   M      PD +T + +L AC    
Sbjct: 451 KVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALA 510

Query: 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400
            ++ G    ++   K G+         ++ +  + G++ EA    D++  + T + W  +
Sbjct: 511 GLERG-KLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDT-VAWNAM 568

Query: 401 LSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL---CARAGRWEDVDYLRKLMKD 456
           L+    H +   A  + +R+  L +    + + L+ +   C+RAG  ++   + ++M++
Sbjct: 569 LAGYGQHGDGLEAVDLFKRM--LKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQE 625



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 174/318 (54%), Gaps = 6/318 (1%)

Query: 106 AIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTL 165
           AI L   +   GLL +  ++  +++ CA   A   E+GK +H    +LG+  ++Y+  +L
Sbjct: 40  AIQLLGIIKQRGLLVNSNTYGCVIEHCA--KARRFEDGKMVHKQLDELGVEIDIYLGNSL 97

Query: 166 INLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTD 225
           IN Y++  DV +A ++F  ++   VV+++++I AYA ++ P +A   F  + + N++P  
Sbjct: 98  INFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNR 157

Query: 226 VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285
           +T LS L +C     L+ G+ IH  +K  G++  V V TALI M++KCG +  A  VF  
Sbjct: 158 ITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHK 217

Query: 286 MSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
           M+ ++  +W+A+I A A H + +++  ++E+M++A +SP+ +TF+ LL +C+    ++ G
Sbjct: 218 MTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRG 277

Query: 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS 405
               +S   + G+   +     ++ +  +   + EA    D +  K   I W  +++  +
Sbjct: 278 -RRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMS-KRDVISWSAMIAGYA 335

Query: 406 SHNNLGLAKQVIERIFEL 423
                   K+ I+ +F+L
Sbjct: 336 QSGYKD--KESIDEVFQL 351



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 149/318 (46%), Gaps = 35/318 (11%)

Query: 20  NTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLIN--------------- 61
           N    +S+L  CT+   L   +QIHA   K   + D ++ T + N               
Sbjct: 363 NKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVF 422

Query: 62  -------------FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIF 108
                        F +       +  A  +F  +P  ++V +N M  GY+++   ++   
Sbjct: 423 SKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFE 482

Query: 109 LFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINL 168
           L   +   G  PD  +  ++L+AC  +    LE GK +H  A+KLGL S+  V T+LI +
Sbjct: 483 LLSSMKAEGFQPDRVTVITILEACGALAG--LERGKLVHAEAVKLGLESDTVVATSLIGM 540

Query: 169 YAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTM 228
           Y++C  V  AR +F+ +S    V++NA++  Y +     EA+ LF+ + +  + P ++T+
Sbjct: 541 YSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITL 600

Query: 229 LSALSSCALLGSLDLGKWIHEYIKK-YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS 287
            + +S+C+  G +  G+ I   +++ + +    +    ++D+  + GRL +A     +M 
Sbjct: 601 TAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMP 660

Query: 288 GK-DTQAWSAMIVAYATH 304
            + D   W A++ A  +H
Sbjct: 661 CEPDISVWHALLGACKSH 678



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 116/238 (48%), Gaps = 3/238 (1%)

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++ R  EA+ L   +++R L     T    +  CA     + GK +H+ + + G++  + 
Sbjct: 33  KAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIY 92

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           +  +LI+ ++K   +  A  VF  M+ +D   WS+MI AYA +    K+   FE M  A 
Sbjct: 93  LGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDAN 152

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           + P+ ITFL +L AC++  ++++G    +++    G+   +     ++ +  + G +  A
Sbjct: 153 IEPNRITFLSILKACNNYSILEKG-RKIHTIVKAMGMETDVAVATALITMYSKCGEISVA 211

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS-HGGDYVILSNLC 438
                ++  ++  + W  ++ + + H  L  A ++ E++ +   S +   +V L N C
Sbjct: 212 CEVFHKMTERNV-VSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSC 268


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/561 (38%), Positives = 339/561 (60%), Gaps = 12/561 (2%)

Query: 1   MATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLT 57
           +AT  +  +   PP    T      SLL  C   + L   KQ+HA      +  + ++ T
Sbjct: 29  LATHQTASVDSFPPQP--TTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLAT 86

Query: 58  KLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSG 117
           KL++       ++S+ +A  LFD+IP+ ++ L+N + RGY+ +     AI L+ ++L+ G
Sbjct: 87  KLVHLYA---VSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYG 143

Query: 118 LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEA 177
           L PD+++ P +LKAC+ +   A+ EG+ +H + IK G   +L+V   LI++YA+C  V  
Sbjct: 144 LRPDNFTLPFVLKACSAL--SAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMD 201

Query: 178 ARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL 237
           A R+F+ I     V +N+++ AYA++  P+E++SL RE+    ++PT+ T+++ +SS A 
Sbjct: 202 AGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSAD 261

Query: 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297
           +  L  G+ IH +  ++G     KV TALIDM+AKCG +  A+++F+ +  K   +W+A+
Sbjct: 262 VACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAI 321

Query: 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG 357
           I  YA HG    ++ +F++M K +  PD ITF+G+L ACS   L+DEG   +  M   YG
Sbjct: 322 ITGYAMHGLAVGALDLFDKMRK-EDRPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYG 380

Query: 358 IVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
           I P ++HY CM+DLLG  G+LDEAY  I  + +K    +W  LL+SC  H N+ LA+  +
Sbjct: 381 ITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELAL 440

Query: 418 ERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREF 477
           E++ EL+    G+YVIL+N+ A++G+WE V+ LR++M D+ + K   CS IEV N V  F
Sbjct: 441 EKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVKNKVYAF 500

Query: 478 FSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAIT 537
            +GD  HS S  +   L  L   +   GY PDT  V H D+E++EK   +  HSE+LAI 
Sbjct: 501 LAGDVSHSNSDAIYAELKRLEGLMHEAGYAPDTGSVFH-DVEEDEKTSMVCSHSERLAIA 559

Query: 538 FGLLNTPPGTTIRVVKNLRVC 558
           FGL++T PGT + + KNLR+C
Sbjct: 560 FGLISTSPGTRLLITKNLRIC 580


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/621 (34%), Positives = 347/621 (55%), Gaps = 71/621 (11%)

Query: 4   TPSPPITQS-----PPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTK 58
           +P  P+  S     P  KL   T   L      TS + L Q+H + +++    D  V   
Sbjct: 11  SPFKPVDFSAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHGLVLRSGHFQDHYVSGA 70

Query: 59  LINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118
           L+  C  NP  S+ + A  +F  IP P++ ++N + +G   +    +AI+ +  ++    
Sbjct: 71  LLK-CYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDAR 129

Query: 119 LPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLY------------------ 160
            P+ +++P+L KAC+   A+A++EG+Q+H   +K G+ S+++                  
Sbjct: 130 -PNKFTYPTLFKACSV--AQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDA 186

Query: 161 -----------VC-TTLINLYAECSDVEAA------------------------------ 178
                      VC  T+I+ Y +C  +EAA                              
Sbjct: 187 RKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGD 246

Query: 179 -RRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL 237
            R++F+ +SE   +S+++++  Y  + R  EAL +F+++Q    +P    + S L++C+ 
Sbjct: 247 ARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSN 306

Query: 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297
           +G++D G+W+H Y+K+  +     + TAL+DM+AKCGRLD    VF+ M  ++   W+AM
Sbjct: 307 IGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAM 366

Query: 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG 357
           I   A HG+   ++ +F ++ + ++ P+ IT +G+L AC+H G VD+G   F +MR+ YG
Sbjct: 367 IGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYG 426

Query: 358 IVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
           + P ++HYGCMVDLLGR+G   EA   I+ +P+K    +W  LL +C  H N  LA++V 
Sbjct: 427 VDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVG 486

Query: 418 ERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREF 477
           + + EL+  + G YV+LSN+ A+ GR++DV  +RKLMKDRG+  VPG S +++N  V EF
Sbjct: 487 KILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEF 546

Query: 478 FSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAIT 537
             GDG H    ++ + L  + + L+M G+ PDTS V   D+++EEKE A+ YHSEKLAI 
Sbjct: 547 KMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLF-DIDEEEKETAVNYHSEKLAIA 605

Query: 538 FGLLNTPPGTTIRVVKNLRVC 558
           FGL+NT PG  I +VKNLRVC
Sbjct: 606 FGLINTLPGKRIHIVKNLRVC 626


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/621 (34%), Positives = 348/621 (56%), Gaps = 71/621 (11%)

Query: 4   TPSPPITQS-----PPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTK 58
           +P  P+  S     P  KL   T   L      TS + L Q+HA+ +++    D  V   
Sbjct: 11  SPFKPVDFSAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHALVLRSGHFQDHYVSGA 70

Query: 59  LINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118
           L+  C  NP  S+ + A  +F  IP P++ ++N + +G   +    +AI+ +  ++    
Sbjct: 71  LLK-CYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDAR 129

Query: 119 LPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLY------------------ 160
            P+ +++P+L KAC+   A+A++EG+Q+H   +K G+ S+++                  
Sbjct: 130 -PNKFTYPTLFKACSV--AQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDA 186

Query: 161 -----------VC-TTLINLYAECSDVEAA------------------------------ 178
                      VC  T+I+ Y +C  +EAA                              
Sbjct: 187 RKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGD 246

Query: 179 -RRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL 237
            R++F+ +SE   +S+++++  Y  + R  EAL +F+++Q    +P    + S L++C+ 
Sbjct: 247 ARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSN 306

Query: 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297
           +G++D G+W+H Y+K+  +     + TAL+DM+AKCGRLD    VF+ M  ++   W+AM
Sbjct: 307 IGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAM 366

Query: 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG 357
           I   A HG+   ++ +F ++ + ++ P+ IT +G+L AC+H G VD+G   F +MR+ YG
Sbjct: 367 IGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYG 426

Query: 358 IVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
           + P ++HYGCMVDLLGR+G   EA   I+ +P+K    +W  LL +C  H N  LA++V 
Sbjct: 427 VDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVG 486

Query: 418 ERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREF 477
           + + EL+  + G YV+LSN+ A+ GR++DV  +RKLMK+RG+  VPG S +++N  V EF
Sbjct: 487 KILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEF 546

Query: 478 FSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAIT 537
             GDG H    ++ + L  + + L+M G+ PDTS V   D+++EEKE A+ YHSEKLAI 
Sbjct: 547 KMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLF-DIDEEEKETAVNYHSEKLAIA 605

Query: 538 FGLLNTPPGTTIRVVKNLRVC 558
           FGL+NT PG  I +VKNLRVC
Sbjct: 606 FGLINTLPGKRIHIVKNLRVC 626


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/537 (39%), Positives = 318/537 (59%), Gaps = 6/537 (1%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           P  L    R    +   +IH + +K     D+ V T L+    +      +E AH +FD 
Sbjct: 116 PFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAK---CGYLEDAHKVFDD 172

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           IP+ ++V +  +  GY        AI +F  LL   L PD ++   +L AC  +G   L 
Sbjct: 173 IPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGD--LN 230

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G+ +H   +++G+  N++V T+L+++YA+C ++E AR +F+ + E  +VS+ A+I  YA
Sbjct: 231 SGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYA 290

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
            +  P EA+ LF ++Q  N+KP   T++  LS+CA LG+L+LG+W+   + +        
Sbjct: 291 LNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPV 350

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           + TALID++AKCG +  A  VF  M  KD   W+A+I   A +G    S  +F ++ K  
Sbjct: 351 LGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLG 410

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           + PD  TF+GLL  C+H GLVDEG  YF SM   + + P I+HYGCMVDLLGRAG LDEA
Sbjct: 411 IKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEA 470

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
           ++ I  +P+++  I+W  LL +C  H +  LA+  ++++ EL+  + G+YV+LSN+ +  
Sbjct: 471 HQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSAN 530

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
            +W++   +R  M ++ + K PGCS IEV+ +V EF  GD  H  S  +   LDEL K++
Sbjct: 531 LKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKM 590

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K+ GYVP T  V   D+E+EEKE  L  HSEKLAI FGL++  P   IRVVKNLRVC
Sbjct: 591 KVAGYVPTTDFVLF-DIEEEEKEHFLGCHSEKLAIAFGLISATPTAVIRVVKNLRVC 646



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/391 (32%), Positives = 218/391 (55%), Gaps = 9/391 (2%)

Query: 54  NVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVEL 113
           N L  +I  C+ +   S   +   LF +I +P+I L+NTM RG   +     AI  +  +
Sbjct: 46  NYLLNMILRCSFD--FSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLM 103

Query: 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
            + G LP++++FP +LKACA +    L+ G ++H   +K G + +++V T+L+ LYA+C 
Sbjct: 104 RSEGFLPNNFTFPFVLKACARL--LDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCG 161

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
            +E A ++F++I +  VVS+ AII+ Y    +  EA+ +FR L E NL P   T++  LS
Sbjct: 162 YLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLS 221

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
           +C  LG L+ G+WIH+ I + G+ + V V T+L+DM+AKCG ++ A SVFD M  KD  +
Sbjct: 222 ACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVS 281

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSM 352
           W AMI  YA +G   ++I +F +M +  V PD  T +G+L AC+  G ++ G W      
Sbjct: 282 WGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVD 341

Query: 353 RDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGL 412
           R+++   P +     ++DL  + G +  A+     +  K   ++W  ++S  + +  + +
Sbjct: 342 RNEFLYNPVLGT--ALIDLYAKCGSMSRAWEVFKGMKEKDR-VVWNAIISGLAMNGYVKI 398

Query: 413 AKQVIERIFELD-DSHGGDYVILSNLCARAG 442
           +  +  ++ +L     G  ++ L   C  AG
Sbjct: 399 SFGLFGQVEKLGIKPDGNTFIGLLCGCTHAG 429



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 175/368 (47%), Gaps = 22/368 (5%)

Query: 152 KLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALS 211
           + GL  + Y+   ++    + SD    R +F  I +P +  +N +I     +   ++A+ 
Sbjct: 39  RFGLCHDNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIE 98

Query: 212 LFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271
            +  ++     P + T    L +CA L  L LG  IH  + K G D  V V T+L+ ++A
Sbjct: 99  FYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYA 158

Query: 272 KCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLG 331
           KCG L+DA  VFD++  K+  +W+A+I  Y   G+  ++I MF  +++  ++PD  T + 
Sbjct: 159 KCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVR 218

Query: 332 LLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIK 391
           +L AC+  G ++ G  + +    + G+V  +     +VD+  + G +++A    D +P K
Sbjct: 219 VLSACTQLGDLNSG-EWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEK 277

Query: 392 STPILWRTLLSSCSSHNNLGLAKQVIERIFEL--DDSHGGDYVILSNL--CARAGRWEDV 447
              + W  ++   + +   GL K+ I+   ++  ++     Y ++  L  CAR G  E  
Sbjct: 278 DI-VSWGAMIQGYALN---GLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELG 333

Query: 448 DYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDE--------LVK 499
           +++  L+     L  P      +   + + ++  G  S + ++ K + E        ++ 
Sbjct: 334 EWVSGLVDRNEFLYNP-----VLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIIS 388

Query: 500 ELKMVGYV 507
            L M GYV
Sbjct: 389 GLAMNGYV 396


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/539 (38%), Positives = 328/539 (60%), Gaps = 13/539 (2%)

Query: 25  LSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFD 80
           +S+LP C   R L   +++HA  ++  L   +NV T +++ +C       ++E A  +FD
Sbjct: 123 VSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCK----CGAVEAARAVFD 178

Query: 81  RIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEAL 140
            +P  + V +N M  GY+ +     A+ LF  ++  G+   D S  + L+AC  +G   L
Sbjct: 179 CMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGY--L 236

Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI-SEPCVVSYNAIITA 199
           +E +++H   +++GL+SN+ V   LI  YA+C   + A ++F  + ++   +S+NA+I  
Sbjct: 237 DEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILG 296

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
           + ++  P +A  LF  +Q  N++P   T++S + + A +      +WIH Y  ++ LD+ 
Sbjct: 297 FTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQD 356

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           V V TALIDM++KCGR+  A  +FD+   +    W+AMI  Y +HG G  ++ +FEEM  
Sbjct: 357 VYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKG 416

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
               P+E TFL +L ACSH GLVDEG  YF SM+  YG+ PG++HYG MVDLLGRAG+LD
Sbjct: 417 TGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLD 476

Query: 380 EAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439
           EA+ FI  +PI+    ++  +L +C  H N+ LA++  + IFEL    G  +V+L+N+ A
Sbjct: 477 EAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYA 536

Query: 440 RAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVK 499
            A  W+DV  +R  M+ +G+ K PG S I++ N V  F+SG   H ++ D+   L +L++
Sbjct: 537 NASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAKLIE 596

Query: 500 ELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           E+K +GYVPDT  +H  D+ED+ K   L  HSEKLAI +GL+ T PGTTI++ KNLRVC
Sbjct: 597 EIKDMGYVPDTDSIH--DVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVC 653



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 119/394 (30%), Positives = 197/394 (50%), Gaps = 17/394 (4%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN--SGLLPDDYSFPSLLKAC 132
           A  +FDR+P  D V +N +  GY+R+  P  A+   V +     G  PD  +  S+L AC
Sbjct: 70  ARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPAC 129

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
           A   A AL   +++H FA++ GL+  + V T +++ Y +C  VEAAR +F+ +     VS
Sbjct: 130 A--DARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVS 187

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +NA+I  YA +    EA++LF  + +  +  TD ++L+AL +C  LG LD  + +HE + 
Sbjct: 188 WNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLV 247

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ-AWSAMIVAYATHGQGHKSI 311
           + GL   V V  ALI  +AKC R D A  VF+ +  K T+ +W+AMI+ +  +     + 
Sbjct: 248 RVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAE 307

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSH-TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370
            +F  M    V PD  T + ++ A +  +  +   W + YS+R +  +   +     ++D
Sbjct: 308 RLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQ--LDQDVYVLTALID 365

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG-- 428
           +  + GR+  A R  D    +   I W  ++    SH   G  +  +E   E+  +    
Sbjct: 366 MYSKCGRVSIARRLFDSARDRHV-ITWNAMIHGYGSH---GFGQAAVELFEEMKGTGSLP 421

Query: 429 GDYVILSNL--CARAGRW-EDVDYLRKLMKDRGV 459
            +   LS L  C+ AG   E   Y   + KD G+
Sbjct: 422 NETTFLSVLAACSHAGLVDEGQKYFASMKKDYGL 455



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 196/414 (47%), Gaps = 33/414 (7%)

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           +F +LLK CA      L  G+ +H      GL S     T L N+Y +C     ARR+F+
Sbjct: 18  TFTALLKLCAARAD--LATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFD 75

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQ--ERNLKPTDVTMLSALSSCALLGSL 241
            +     V++NA++  YAR+  P+ A+     +Q  E   +P  VT++S L +CA   +L
Sbjct: 76  RMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARAL 135

Query: 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
              + +H +  + GLD+ V V+TA++D + KCG ++ A +VFD M  +++ +W+AMI  Y
Sbjct: 136 HACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGY 195

Query: 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG 361
           A +G   +++ +F  M++  V   + + L  L AC   G +DE     + +  + G+   
Sbjct: 196 ADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDE-VRRVHELLVRVGLSSN 254

Query: 362 IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421
           +     ++    +  R D A +  +EL  K T I W  ++   + +     A+++  R+ 
Sbjct: 255 VSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARM- 313

Query: 422 ELDDSHGGDYVILSNLCARA-------GRWEDVDYLR-KLMKDRGVLKV-----PGCSSI 468
           +L++     + ++S + A A        RW     +R +L +D  VL         C  +
Sbjct: 314 QLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRV 373

Query: 469 EVNNVVREFFSGDG----------VHSY-STDLQKALDELVKELKMVGYVPDTS 511
              ++ R  F              +H Y S    +A  EL +E+K  G +P+ +
Sbjct: 374 ---SIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNET 424


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/557 (38%), Positives = 315/557 (56%), Gaps = 66/557 (11%)

Query: 64   TQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRS-----------KTPIR------- 105
            T       ++ A L+FD I  P++V +N +  GY+++           K P++       
Sbjct: 466  TAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAA 525

Query: 106  -------------AIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
                         A+ L +EL  SG +P D SF S L ACA +G   +E G+ +H  AIK
Sbjct: 526  MIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGD--VEIGRVIHSLAIK 583

Query: 153  LGLNSNLYVCTTLINLYAECSDVEA-------------------------------ARRI 181
             G   N YV   LI++YA+C +VE                                AR +
Sbjct: 584  TGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVV 643

Query: 182  FENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSL 241
            FE + +  VVS+ AII+AY ++     AL LF ++  R +KP  +T+ S LS+C  LG++
Sbjct: 644  FEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAI 703

Query: 242  DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
             LG+  H  I K G D ++ V  +LI M+ KCG  +D   VF+ M   D   W+A++V  
Sbjct: 704  KLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGC 762

Query: 302  ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG 361
            A +G G ++I +FE+M    + PD+++FLG+L ACSH GLVDEGW +F SM  KYGI+P 
Sbjct: 763  AQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPL 822

Query: 362  IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421
            + HY CMVDLLGRAG L EA   I+ +P+K   ++W  LL +C  H N+ L ++V ER+F
Sbjct: 823  VYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLF 882

Query: 422  ELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGD 481
            ++       YV+LSNL A  G W+ V  +RKLMKD+G+ K PG S I+V N +  F +GD
Sbjct: 883  QMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGD 942

Query: 482  GVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLL 541
              H    ++  AL E     +  GY+PDT+ V H D+E+E+K+  L YHSEKLA+ FG+L
Sbjct: 943  RTHDQIEEIYSALKEYYGCFRATGYMPDTNFVLH-DVEEEQKQNELLYHSEKLAVVFGIL 1001

Query: 542  NTPPGTTIRVVKNLRVC 558
            +TP G+ I+++KNLR+C
Sbjct: 1002 STPNGSPIQIIKNLRIC 1018



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 166/353 (47%), Gaps = 12/353 (3%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           M  A  LFD++PE + V +  M  GY        A  +FV++  +   PD   F  +L A
Sbjct: 311 MSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSA 370

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
               G + LE    L   AIK G   ++ V + ++N Y     ++ A   FE + E    
Sbjct: 371 IT--GLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEY 428

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+  +I A+A+  R ++A+ L+  + E+    T  T  + +++ A +G +   + I + I
Sbjct: 429 SWTTMIAAFAQCGRLDDAIQLYERVPEQ----TVATKTAMMTAYAQVGRIQKARLIFDEI 484

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
               L+  V    A+I  + + G L +A  +F  M  K++ +W+AMI  +  + +  +++
Sbjct: 485 ----LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREAL 540

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +  E+ ++   P + +F   L AC++ G V+ G    +S+  K G          ++ +
Sbjct: 541 ELLIELHRSGSVPSDSSFTSALSACANIGDVEIG-RVIHSLAIKTGCQFNSYVMNGLISM 599

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
             + G +++       + +K T + W +L+S  S +  L  A+ V E++ + D
Sbjct: 600 YAKCGNVEDGSHVFRTIRVKDT-VSWNSLISGLSENYMLDDARVVFEKMPKRD 651



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/386 (21%), Positives = 170/386 (44%), Gaps = 54/386 (13%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +E A  +F+ + + D+V +N+M  GYS++     A  LF   +   +     ++  LL  
Sbjct: 187 VEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNI----RTWTILLTG 242

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
            A  G   +EE +++     +     N+     +I+ Y +  D++ AR++F+ + E  V 
Sbjct: 243 YAKEGR--IEEAREV----FESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVA 296

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERN------------------------------- 220
           S+N+++T Y    R +EA  LF ++ ERN                               
Sbjct: 297 SWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTV 356

Query: 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV 280
            +P     +  LS+   L  L+L   +     K G +  V V +A+++ + + G LD A+
Sbjct: 357 ARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAM 416

Query: 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG 340
             F+ M  ++  +W+ MI A+A  G+   +I ++E + +  V+    T   ++ A +  G
Sbjct: 417 HFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVA----TKTAMMTAYAQVG 472

Query: 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400
            + +    F  + +     P +  +  ++    + G L EA     ++P+K++   W  +
Sbjct: 473 RIQKARLIFDEILN-----PNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSAS-WAAM 526

Query: 401 LSSCSSHNNLGLAKQVIERIFELDDS 426
           ++    +     +++ +E + EL  S
Sbjct: 527 IAGFVQNEE---SREALELLIELHRS 549



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 128/295 (43%), Gaps = 35/295 (11%)

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
            ++L+ C T I        VE ARR+F  + +  VVS+N++I  Y+++ + +EA  LF  
Sbjct: 168 QTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDA 227

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE----------------YIKKYGL--- 256
              +N++    T    L+  A  G ++  + + E                Y++   L   
Sbjct: 228 FVGKNIR----TWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNA 283

Query: 257 --------DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
                   +K V    +++  +  C R+ +A  +FD M  +++ +W  MI  Y       
Sbjct: 284 RKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYW 343

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVD-EGWNYFYSMRDKYGIVPGIKHYGC 367
           ++  +F +M +    PD+  F+ +L A   TGL D E       +  K G    +     
Sbjct: 344 EAWDVFVKMCRTVARPDQSIFVVVLSAI--TGLDDLELIGSLRPIAIKTGYEGDVVVGSA 401

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
           +++   R G LD A  F + +P +     W T++++ +    L  A Q+ ER+ E
Sbjct: 402 ILNAYTRNGSLDLAMHFFETMP-ERNEYSWTTMIAAFAQCGRLDDAIQLYERVPE 455


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/483 (39%), Positives = 313/483 (64%), Gaps = 7/483 (1%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           +F+ +P  D+V +NT+  GY++S     A+ +  E+  + L PD ++  S+L     + +
Sbjct: 198 VFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLP----IFS 253

Query: 138 EALE--EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
           E ++  +GK++H + I+ G++S++Y+ ++L+++YA+ + +E + R+F  +     +S+N+
Sbjct: 254 EYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNS 313

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           ++  Y ++ R NEAL LFR++    +KP  V   S + +CA L +L LGK +H Y+ + G
Sbjct: 314 LVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGG 373

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
               + + +AL+DM++KCG +  A  +FD M+  D  +W+A+I+ +A HG GH+++ +FE
Sbjct: 374 FGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFE 433

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
           EM +  V P+++ F+ +L ACSH GLVDE W YF SM   YG+   ++HY  + DLLGRA
Sbjct: 434 EMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRA 493

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
           G+L+EAY FI ++ ++ T  +W TLLSSCS H NL LA++V E+IF +D  + G YV++ 
Sbjct: 494 GKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMC 553

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           N+ A  GRW+++  LR  M+ +G+ K P CS IE+ N    F SGD  H     + + L 
Sbjct: 554 NMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLK 613

Query: 496 ELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNL 555
            ++++++  GYV DTS V H D+++E K   L  HSE+LA+ FG++NT PGTTIRV KN+
Sbjct: 614 AVMEQMEKEGYVADTSGVLH-DVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNI 672

Query: 556 RVC 558
           R+C
Sbjct: 673 RIC 675



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 174/349 (49%), Gaps = 41/349 (11%)

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
           F  +  P ++ + ++ R ++      +A+  FVE+  SG  PD   FPS+LK+C  +   
Sbjct: 62  FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMM--M 119

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC-------------------------S 173
            L  G+ +H F ++LG++ +LY    L+N+YA+                           
Sbjct: 120 DLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDE 179

Query: 174 DVEA-----------ARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK 222
           DV+A            RR+FE +    VVSYN II  YA+S    +AL + RE+   +LK
Sbjct: 180 DVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLK 239

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
           P   T+ S L   +    +  GK IH Y+ + G+D  V + ++L+DM+AK  R++D+  V
Sbjct: 240 PDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERV 299

Query: 283 FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342
           F  +  +D  +W++++  Y  +G+ ++++ +F +M+ A+V P  + F  ++ AC+H   +
Sbjct: 300 FSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATL 359

Query: 343 DEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
             G   + Y +R  +G    I     +VD+  + G +  A +  D + +
Sbjct: 360 HLGKQLHGYVLRGGFG--SNIFIASALVDMYSKCGNIKAARKIFDRMNV 406



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 156/269 (57%), Gaps = 7/269 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K+IH   I+  + +D+ + + L++   +   ++ +E +  +F R+   D + +N++  GY
Sbjct: 262 KEIHGYVIRKGIDSDVYIGSSLVDMYAK---SARIEDSERVFSRLYCRDGISWNSLVAGY 318

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            ++     A+ LF +++ + + P   +F S++ ACA +    L  GKQLH + ++ G  S
Sbjct: 319 VQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLA--TLHLGKQLHGYVLRGGFGS 376

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           N+++ + L+++Y++C +++AAR+IF+ ++    VS+ AII  +A     +EA+SLF E++
Sbjct: 377 NIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMK 436

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
            + +KP  V  ++ L++C+ +G +D    + +   K YGL++ ++   A+ D+  + G+L
Sbjct: 437 RQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKL 496

Query: 277 DDAVSVFDNMSGKDT-QAWSAMIVAYATH 304
           ++A +    M  + T   WS ++ + + H
Sbjct: 497 EEAYNFISKMCVEPTGSVWSTLLSSCSVH 525



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 126/298 (42%), Gaps = 41/298 (13%)

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           + KQLH   I+    S+    + +I++Y     +  A  +F+ +  P V+++ ++I  + 
Sbjct: 23  QAKQLHAQFIRTQSLSHT-SASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFT 81

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
             S  ++AL+ F E++     P      S L SC ++  L  G+ +H +I + G+D  + 
Sbjct: 82  DQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLY 141

Query: 262 VNTALIDMHAKCGRLDDAVS------------------------------------VFDN 285
              AL++M+AK   +   +S                                    VF+ 
Sbjct: 142 TGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEV 201

Query: 286 MSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
           M  KD  +++ +I  YA  G    ++ M  EM    + PD  T   +L   S    V +G
Sbjct: 202 MPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKG 261

Query: 346 WN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
              + Y +R   GI   +     +VD+  ++ R++++ R    L  +   I W +L++
Sbjct: 262 KEIHGYVIRK--GIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRD-GISWNSLVA 316


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/569 (36%), Positives = 336/569 (59%), Gaps = 39/569 (6%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           +S+L  CT    +KQ+HA   +  L+    VL KL+   T+        +  L+F ++  
Sbjct: 43  VSVLHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMD-PYPRLVFQQVEY 101

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
           P+  L+  + RGY+     + ++ L+  +   G+ P  ++F +LLKAC+   A  +  G+
Sbjct: 102 PNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACS--AALDVNLGR 159

Query: 145 QLHCFAIKLG-LNSNLYVCTTLINLYAECS------------------------------ 173
           Q+H   I +G   S+LYV  TLI++Y +C                               
Sbjct: 160 QVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKV 219

Query: 174 -DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232
            ++EAA  +F+ +    +V++ A++T YA+++RP EAL +F  +Q   +K  +VT++  +
Sbjct: 220 GNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVI 279

Query: 233 SSCALLGSLDLGKWIHEYIKK--YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290
           S+CA LG+     W+ +  ++  +G    V V +ALIDM+AKCG ++DA  VF+ M  ++
Sbjct: 280 SACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERN 339

Query: 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350
             ++S+MIV +A HG    ++ +F+EM+K ++ P+ +TF+G+L ACSH G+V++G   F 
Sbjct: 340 VYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFA 399

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
            M + +G+ P   HY CMVDLLGRAGRL+EA   +  +P+     +W  LL +C  H N 
Sbjct: 400 MMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNP 459

Query: 411 GLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIE- 469
            +A+     +FEL+ +  G+Y++LSN+ A AGRW+DV  +RKLM+ +G+ K PGCS +E 
Sbjct: 460 DMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEG 519

Query: 470 VNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRY 529
              ++ EFF+GD  H  S ++++AL++L+  LK +GY P+ S V + D+ DEEK+  L  
Sbjct: 520 KKGIIHEFFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAY-DISDEEKKRLLMS 578

Query: 530 HSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           HSEKLA+ FGLL T  G TIR+VKNLR+C
Sbjct: 579 HSEKLALAFGLLTTNAGCTIRIVKNLRIC 607



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 8/208 (3%)

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           F   QE+  K  +  ++S L  C  +  +   K +H +I + GL++   V   L+    K
Sbjct: 29  FSVRQEQ--KILESRLVSVLHGCTHINQV---KQVHAHIFRKGLEQCCFVLAKLLRTLTK 83

Query: 273 CGRLDDAVS--VFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
                D     VF  +   +   W+A+I  YA  G   +S+L++  M +  + P   TF 
Sbjct: 84  LDVPMDPYPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFT 143

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
            LL ACS    V+ G           G    +     ++D+  + G L   +R  DE+ +
Sbjct: 144 ALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEM-L 202

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVIE 418
               I W +L+ + +   N+  A ++ +
Sbjct: 203 DRDVISWTSLIVAYAKVGNMEAASELFD 230


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/547 (38%), Positives = 332/547 (60%), Gaps = 11/547 (2%)

Query: 17  LCTNTPNALSLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSME 73
           L TN  +  ++L  C   R +++   +HA  IKTH    + + T+LI F  +     S+ 
Sbjct: 54  LDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVK---CDSLR 110

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
            A  +FD +PE ++V +  M   YS+     +A+ LFV++L SG  P++++F ++L +C 
Sbjct: 111 DARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSC- 169

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
            +G+     G+Q+H   IKL   +++YV ++L+++YA+   +  AR IF+ + E  VVS 
Sbjct: 170 -IGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSC 228

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
            AII+ YA+     EAL LFR LQ   ++   VT  S L++ + L +LD GK +H ++ +
Sbjct: 229 TAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLR 288

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
             +  YV +  +LIDM++KCG L  A  +FD +  +   +W+AM+V Y+ HG+G + + +
Sbjct: 289 SEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLEL 348

Query: 314 FEEMM-KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD-KYGIVPGIKHYGCMVDL 371
           F  M+ + +V PD +T L +L  CSH GL D+G + FY M   K  + P  KHYGC+VD+
Sbjct: 349 FNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDM 408

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
           LGRAGR++ A+ F+ ++P + +  +W  LL +CS H+NL + + V  ++ +++  + G+Y
Sbjct: 409 LGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPENAGNY 468

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           VILSNL A AGRWEDV  LR LM  + V K PG S IE++ V+  F + D  H    ++ 
Sbjct: 469 VILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCSHPRREEVS 528

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
             + EL    K  GYVPD S V H D+++E+KE  L  HSEKLA+TFGL+ TP    IRV
Sbjct: 529 AKVQELSARFKEAGYVPDLSCVLH-DVDEEQKEKILLSHSEKLALTFGLIATPESVPIRV 587

Query: 552 VKNLRVC 558
           +KNLR+C
Sbjct: 588 IKNLRIC 594


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/523 (38%), Positives = 330/523 (63%), Gaps = 10/523 (1%)

Query: 31  CTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDI 87
           C   R L   +Q+HA  I    +  + + T+L+    +     +++ A  + DR+PE  +
Sbjct: 20  CIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVR---CGALDDARNVLDRMPERSV 76

Query: 88  VLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLH 147
           V + TM  GYS+++  + A+ LF+++L +G +P++Y+  ++L +C+  G +++ +GKQ+H
Sbjct: 77  VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCS--GPQSIYQGKQVH 134

Query: 148 CFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPN 207
              +K    S+++V ++L+++YA+  +++ ARR+F+ + E  VVS  AII+ YA+     
Sbjct: 135 SLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDE 194

Query: 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267
           EAL LFR+L    ++   VT  + +++ + L SLD GK +H  I +  L  +V +  +LI
Sbjct: 195 EALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLI 254

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
           DM++KCG+L  +  VFDNM  +   +W+AM++ Y  HG GH+ I +F+++ K +V PD +
Sbjct: 255 DMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHK-EVKPDSV 313

Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
           T L +L  CSH GLVDEG + F ++  +   +    HYGC++DLLGR+GRL++A   I+ 
Sbjct: 314 TLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIEN 373

Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447
           +P +STP +W +LL +C  H N+ + + V +++ E++  + G+YVILSN+ A AG W+DV
Sbjct: 374 MPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDV 433

Query: 448 DYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYV 507
             +RKLM ++ V K PG S I ++ V+  F S +  H    D+   + E+  ++K  G+V
Sbjct: 434 FKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFV 493

Query: 508 PDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIR 550
           PD S V H D++DE+KE  L  HSEKLAITFGL+NTPPG TIR
Sbjct: 494 PDLSCVLH-DVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIR 535



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 165/333 (49%), Gaps = 11/333 (3%)

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
           AC+   AL EG+Q+H   I       +++ T L+ +Y  C  ++ AR + + + E  VVS
Sbjct: 19  ACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVS 78

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +  +I+ Y+++ R  EAL LF ++      P + T+ + L+SC+   S+  GK +H  + 
Sbjct: 79  WTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLV 138

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           K   + ++ V ++L+DM+AK   + +A  VFD +  +D  + +A+I  YA  G   +++ 
Sbjct: 139 KTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALD 198

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDL 371
           +F ++    +  + +TF  L+ A S    +D G   +   +R +      +++   ++D+
Sbjct: 199 LFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQN--SLIDM 256

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
             + G+L  + R  D + ++ + + W  +L     H   GL  +VI    +L      D 
Sbjct: 257 YSKCGKLLYSRRVFDNM-LERSVVSWNAMLMGYGRH---GLGHEVISLFKDLHKEVKPDS 312

Query: 432 VILSNL---CARAGRW-EDVDYLRKLMKDRGVL 460
           V L  +   C+  G   E +D    ++K++  L
Sbjct: 313 VTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSAL 345


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/472 (43%), Positives = 303/472 (64%), Gaps = 9/472 (1%)

Query: 90   FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCF 149
             NT+ R  + S  P  A+ L    L    LPD +++P L++ACA +   AL EG+ LH  
Sbjct: 775  LNTVLRIAAGSPRPRVALELHRRRLA---LPDTHTYPPLIQACARL--LALREGECLHAE 829

Query: 150  AIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN--ISEPCVVSYNAIITAYARSSRPN 207
            A K G  + ++V  +L++LY  C   E+A ++F+   +    +VS+N+++ ++A + RPN
Sbjct: 830  AAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPN 889

Query: 208  EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267
            E L++F E+   +  P   T++S L++CA  G+L LG+ +H Y++K GL +   V+ ALI
Sbjct: 890  EVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALI 949

Query: 268  DMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
            D++AKCG ++DA  +F+ M  G+   +W+++IV  A +G G +++ +F  M + ++ P E
Sbjct: 950  DLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTE 1009

Query: 327  ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
            IT +G+LYACSH GLVD+G+ YF  M++ YGI P I+H GCMVDLLGRAGR++EAY +I 
Sbjct: 1010 ITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYII 1069

Query: 387  ELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWED 446
             +P++   ++WRTLL SC+ H  L L K   ER+ ELD  H GDYV+LSNL A  G W D
Sbjct: 1070 TMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWAD 1129

Query: 447  VDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGY 506
            V  LRK M    V K PG S +E+ N V EF  GD  H  S  + + L E+ + L+  GY
Sbjct: 1130 VHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGY 1189

Query: 507  VPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +P TS V   D+E+EEKE AL YHSE+LAI F LL + PG  IR++KNLR+C
Sbjct: 1190 IPRTSNV-LADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMC 1240



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 135/253 (53%), Gaps = 7/253 (2%)

Query: 72   MEHAHLLFDRIP--EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
             E AH +FD +P    ++V +N+M   ++ +  P   + +F E+L     PD ++  S+L
Sbjct: 855  FESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVL 914

Query: 130  KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS-EP 188
             ACA  GA AL  G+++H +  K+GL  N +V   LI+LYA+C  V  ARRIFE +    
Sbjct: 915  TACAEFGALAL--GRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGR 972

Query: 189  CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWI 247
             VVS+ ++I   A +    EAL LF  ++   L PT++TM+  L +C+  G +D G ++ 
Sbjct: 973  TVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYF 1032

Query: 248  HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHGQ 306
                + YG+   ++    ++D+  + GR+++A      M  + +   W  ++ + A H +
Sbjct: 1033 DRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKK 1092

Query: 307  GHKSILMFEEMMK 319
                 + +E +++
Sbjct: 1093 LELGKVAWERLVE 1105


>gi|242054761|ref|XP_002456526.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
 gi|241928501|gb|EES01646.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
          Length = 552

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/529 (40%), Positives = 323/529 (61%), Gaps = 12/529 (2%)

Query: 23  NALSLLPRCTSFRGLKQIHAVTIKTHLQN-----DLNVLTKLINFCTQNPTTSSMEHAHL 77
           + +SLL  C     L+  HA   +  L        L+ L          P  ++  +A  
Sbjct: 20  HVVSLLRGCRGLLALRSAHAHLTRLRLPRLTAAFALSKLLAACASAPAPPAAAASSYART 79

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVEL-LNSGL-LPDDYSFPSLLKACACV 135
           LFD+IP+P    +N++ R    +            L L +G   P+ ++    LKACA V
Sbjct: 80  LFDQIPDPTAFCYNSLIRALPAAGAAPAPALAVYRLMLRAGSPRPNTFTLAFALKACAAV 139

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS-EPCVVSYN 194
            A    EG+QLH  A++ GL ++ YV T L+NLYA+C  V  AR +F+ ++ +  +V+++
Sbjct: 140 PAPG--EGRQLHAQALRQGLEASAYVQTGLLNLYAKCEQVALARTVFDGMAPDKSLVAWS 197

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           A+I  Y+R     EAL LFRE+Q   ++P +VTM+  +S+CA  G+LDLGKW+H YI + 
Sbjct: 198 AMINGYSRVGMVTEALGLFREMQAVGVEPDEVTMVGVISACAKAGALDLGKWVHAYIDRK 257

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
           G+   ++++TALIDM+AKCG ++ A  VFD M  KDT+AWSAMIV +A HG    ++ +F
Sbjct: 258 GITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLF 317

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
             M++ +V P+ +TF+G+L AC+H+GLVD+G  Y +S+    GI P +++YGCM+DLL R
Sbjct: 318 SRMLELKVRPNNVTFIGVLSACAHSGLVDDGRRY-WSIMQNLGIKPSMENYGCMIDLLCR 376

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
           +G LD+AY F+ ++PI    I+WRTLL +C S N + +A+   +R+ EL+  +  +YV+L
Sbjct: 377 SGLLDDAYSFVIDMPISPNSIIWRTLLVACKSSNRIDIAESASKRLLELEPHNPENYVLL 436

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
           SNLCA   +W+ V YLRK MKD  V  V GCSSIE+N  + EF   D  H    +++  L
Sbjct: 437 SNLCASNSQWDRVSYLRKKMKDSNVTAVAGCSSIEINGYLHEFVVSDDSHPEIKEIRLVL 496

Query: 495 DELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNT 543
            E+   ++  G+ P T+ V H D+ +EEKE+AL  HSE+LAI +GLL T
Sbjct: 497 REIADRVRRAGHKPWTAAVLH-DVGEEEKEVALCEHSERLAIAYGLLKT 544


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/553 (37%), Positives = 334/553 (60%), Gaps = 37/553 (6%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           + +H + IK+ + +D+ V   LI+ C    +   ++ A  +F  I E D+V +N+M  G+
Sbjct: 153 QSLHGMAIKSAVGSDVFVANSLIH-CYF--SCGDLDSACKVFTTIKEKDVVSWNSMINGF 209

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            +  +P +A+ LF ++ +  +     +   +L ACA +    LE G+++  +  +  +N 
Sbjct: 210 VQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKI--RDLEFGRRVCSYIEENRVNV 267

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPC---------------------------- 189
           NL +   ++++Y +C  +E A+R+F+ + E                              
Sbjct: 268 NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMP 327

Query: 190 ---VVSYNAIITAYARSSRPNEALSLFRELQ-ERNLKPTDVTMLSALSSCALLGSLDLGK 245
              +V++NA+I+AY ++ +PNEAL +F ELQ ++N+K   +T++S LS+CA +G+L+LG+
Sbjct: 328 KKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGR 387

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
           WIH YIKK G+     V +ALI M++KCG L+ A  VF+++  +D   WSAMI   A HG
Sbjct: 388 WIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHG 447

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY 365
            G +++ MF +M +A V P+ +TF  +  ACSHTGLVDE  + FY M   YGIVP  KHY
Sbjct: 448 CGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHY 507

Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
            C+VD+LGR+G L++A +FI+ +PI  +  +W  LL +C  H NL LA+    R+ EL+ 
Sbjct: 508 ACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEP 567

Query: 426 SHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHS 485
            + G +V+LSN+ A++G+W++V  LRK M+  G+ K PGCSSIE++ ++ EF SGD  H 
Sbjct: 568 RNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHP 627

Query: 486 YSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPP 545
            S  +   L E++++LK  GY P+ S V     E+E KE +L  HSEKLAI +GL++T  
Sbjct: 628 MSEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEA 687

Query: 546 GTTIRVVKNLRVC 558
              IRV+KNLR+C
Sbjct: 688 PKAIRVIKNLRMC 700



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 125/459 (27%), Positives = 247/459 (53%), Gaps = 48/459 (10%)

Query: 3   TTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINF 62
           + P+ P T +   +      + +SL+ RC+S R LKQ HA  I+T + +D    +KL   
Sbjct: 19  SNPNQPTTNNERSR------HTISLIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAI 72

Query: 63  CTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS--GLLP 120
              + + +S+E+A  +FD IP+P+   +NT+ R Y+    P+ +I+ F+++++S     P
Sbjct: 73  AALS-SFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYP 131

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           + Y+FP L+KA A V + +L  G+ LH  AIK  + S+++V  +LI+ Y  C D+++A +
Sbjct: 132 NKYTFPFLIKAAAEVSSLSL--GQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACK 189

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
           +F  I E  VVS+N++I  + +   P++AL LF++++  ++K + VTM+  LS+CA +  
Sbjct: 190 VFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRD 249

Query: 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDT--------- 291
           L+ G+ +  YI++  ++  + +  A++DM+ KCG ++DA  +FD M  KD          
Sbjct: 250 LEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDG 309

Query: 292 ----------------------QAWSAMIVAYATHGQGHKSILMFEEM-MKAQVSPDEIT 328
                                  AW+A+I AY  +G+ ++++L+F E+ ++  +  ++IT
Sbjct: 310 YAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQIT 369

Query: 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388
            +  L AC+  G ++ G  + +S   K GI         ++ +  + G L++A    + +
Sbjct: 370 LVSTLSACAQVGALELG-RWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSV 428

Query: 389 PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
             K    +W  ++   + H   G   + ++  +++ +++
Sbjct: 429 E-KRDVFVWSAMIGGLAMH---GCGSEAVDMFYKMQEAN 463


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/555 (39%), Positives = 332/555 (59%), Gaps = 19/555 (3%)

Query: 15  PKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEH 74
           P   +N P  L LL +C +   LKQ+HA  I T L      L++++       +T    H
Sbjct: 4   PNPSSNHPT-LQLLEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLI----SSTIVFTH 58

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIF-LFVELL-NSGLLPDDYSFPSLLKAC 132
           A  +F+ IP P I L+NT+    +  K      F L+  +L ++ L P+ ++FPSL KAC
Sbjct: 59  ALSIFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKAC 118

Query: 133 ACVGAEALEEGKQLHCFAIK-LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
                  L  G+ LH   +K L    + +V   L+N YA+C  V A R +F  IS+P + 
Sbjct: 119 G--SQPWLRHGRALHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLA 176

Query: 192 SYNAIITAYARSSRPN--------EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
           S+N+I++AY  +S           E L+LF E+Q+  +K  +VT+++ +S+CA LG+L  
Sbjct: 177 SWNSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQ 236

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303
           G W H Y+ K+ L     V TALIDM++KCG LD A  +FD +  +DT  ++AMI  +A 
Sbjct: 237 GAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAI 296

Query: 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK 363
           HG GH+++ +F++M    ++PD++T +  + +CSH GLV+EG + F SM++ YG+ P ++
Sbjct: 297 HGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLE 356

Query: 364 HYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
           HYGC+VDLLGRAGRL EA   +  +P+K   ++WR+LL +   H NL + + V++ + +L
Sbjct: 357 HYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQL 416

Query: 424 DDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGV 483
           +    G+YV+LSN+ A   RW+DV  +RKLMKD G+ KVPG S +EV   + EF  GD  
Sbjct: 417 EPETSGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKT 476

Query: 484 HSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNT 543
           H  S ++   L+E+ + L   G+ P T  V   D+E+EEKE AL YHSE+LAI F L+ +
Sbjct: 477 HPRSKEIYLKLEEMSRRLHEYGHKPRTLEVLF-DIEEEEKEDALSYHSERLAIAFALIAS 535

Query: 544 PPGTTIRVVKNLRVC 558
                IR++KNLRVC
Sbjct: 536 HHCAPIRIIKNLRVC 550


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/554 (38%), Positives = 333/554 (60%), Gaps = 7/554 (1%)

Query: 6   SPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQ 65
           SPP +     K   N    LSLL RC S    KQ+HA  +K  L  D    + L+  C  
Sbjct: 18  SPPQSSELNAKF--NEQGWLSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVASCAL 75

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSF 125
           +    SME+A  +F +I EP    +NTM RG   S     A+ L+VE+L  G+ PD++++
Sbjct: 76  S-RWGSMEYACSIFSQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTY 134

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
           P +LKAC+ +   AL+EG Q+H    K GL  +++V   LI++Y +C  +E A  +FE +
Sbjct: 135 PFVLKACSLL--VALKEGVQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQM 192

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFRELQ-ERNLKPTDVTMLSALSSCALLGSLDLG 244
            E  V S+++II A+A     +E L L  ++  E   +  +  ++SALS+C  LGS +LG
Sbjct: 193 DEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLG 252

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
           + IH  + +   +  V V T+LIDM+ KCG L+  + VF NM+ K+  +++ MI   A H
Sbjct: 253 RCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIH 312

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364
           G+G +++ +F +M++  ++PD++ ++G+L ACSH GLV+EG   F  M+ ++ I P I+H
Sbjct: 313 GRGREAVRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQH 372

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
           YGCMVDL+GRAG L EAY  I  +PIK   ++WR+LLS+C  H+NL + +   E IF L+
Sbjct: 373 YGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRLN 432

Query: 425 DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVH 484
             + GDY++L+N+ ARA +W +V  +R  M ++ +++ PG S +E N  V +F S D   
Sbjct: 433 KHNPGDYLVLANMYARAKKWANVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQ 492

Query: 485 SYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTP 544
                +   + ++  +LK  GY PD S V   D++++EK   L++HS+KLAI F L+ T 
Sbjct: 493 PICETIYDMIQQMEWQLKFEGYTPDMSQVLL-DVDEDEKRQRLKHHSQKLAIAFALIQTS 551

Query: 545 PGTTIRVVKNLRVC 558
            G+ IR+ +NLR+C
Sbjct: 552 EGSPIRISRNLRMC 565


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/543 (40%), Positives = 323/543 (59%), Gaps = 19/543 (3%)

Query: 21  TPNALSLLPRCTSFRGLKQI----HAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           +  + SL+ R  +  G  Q+    H   +K   + D+ + T L++F  +      ++ A 
Sbjct: 9   SKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAK---VGDLKCAK 65

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +F  +P  D+V  N M    S+      A  LF  +       +  S+ S++  C C  
Sbjct: 66  RVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTER----NSCSWNSMI-TCYCKL 120

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI-SEPCVVSYNA 195
            +         C  +K  ++ N      +I+ Y +   + AA+ +F  + S    V++N 
Sbjct: 121 GDINSARLMFDCNPVKDVVSWN-----AIIDGYCKSKQLVAAQELFLLMGSARNSVTWNT 175

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +I+AY +      A+S+F+++Q  N+KPT+VTM+S LS+CA LG+LD+G+WIH YI+   
Sbjct: 176 MISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKR 235

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
           L   V +  ALIDM+ KCG L+ A+ VF  +S K+   W+++IV    +G+G ++I  F 
Sbjct: 236 LKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFI 295

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
            M K  + PD +TF+G+L  CSH+GL+  G  YF  M   YG+ PG++HYGCMVDLLGRA
Sbjct: 296 VMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRA 355

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
           G L EA   I  +P+K   ++  +LL +C  H +  L +QV +++ ELD   GG+YV LS
Sbjct: 356 GYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLS 415

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           NL A   RW+DV+  RKLM  RGV K PGCSSIEVNN+V EF +GD  H   T +   LD
Sbjct: 416 NLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLD 475

Query: 496 ELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNL 555
           E+ KELK  G+VP+T+ V H D+E+EEKE A+RYHSE++A+ FGL++TPPG TIRVVKNL
Sbjct: 476 EIAKELKGQGHVPNTANVLH-DIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNL 534

Query: 556 RVC 558
           R C
Sbjct: 535 RTC 537



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 147/293 (50%), Gaps = 19/293 (6%)

Query: 113 LLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172
           +L + +LP   SF  +L++CA  G   L  G+  HC  +K+G   ++ + T L++ YA+ 
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQL--GEAFHCQIMKMGFEYDMILQTGLLDFYAKV 58

Query: 173 SDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232
            D++ A+R+F  +    VV+ NA+I+A ++     EA +LF  + ERN      +  S +
Sbjct: 59  GDLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERN----SCSWNSMI 114

Query: 233 SSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM-SGKDT 291
           +    LG ++  + + +        K V    A+ID + K  +L  A  +F  M S +++
Sbjct: 115 TCYCKLGDINSARLMFDCNPV----KDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNS 170

Query: 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-W--NY 348
             W+ MI AY   G+   +I MF++M    V P E+T + LL AC+H G +D G W   Y
Sbjct: 171 VTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGY 230

Query: 349 FYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
             + R K  +V G      ++D+  + G L+ A      L  K+    W +++
Sbjct: 231 IRTKRLKIDVVLG----NALIDMYCKCGALEAAIDVFHGLSRKNI-FCWNSII 278


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/568 (38%), Positives = 328/568 (57%), Gaps = 39/568 (6%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLI-NFCTQNPTTSSMEHAHLLFDRIP 83
           +S++  CT+ R LKQIH   +   L ND  ++ + + +    NP  +++ +++ + D   
Sbjct: 13  ISMVEPCTTLRELKQIHTQLLINGLLNDPQLVGQFVASIALNNP--NNLHYSNQVLDNSQ 70

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSG--LLPDDYSFPSLLKACACVGAEALE 141
            P +  FN+M R +S+S TP R+   +  +L+S   L PD+Y+F  L++  A + A    
Sbjct: 71  NPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHG-- 128

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV---------- 191
            G  +H  A+K G   + +V + LI +YAE   ++A  R+F +I EP +V          
Sbjct: 129 TGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACA 188

Query: 192 ---------------------SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLS 230
                                ++NA+I+ Y +  +  EALSLF  +Q   +K  +V+M+S
Sbjct: 189 KMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVS 248

Query: 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290
            LS+C+ LG+LD G+W H YI++  L   + + TALIDM+AKCG ++ A+ VF  M  K+
Sbjct: 249 VLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKN 308

Query: 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350
              WS+ I   A +G G K + +F  M +  V P+EITF+ +L  CS  GLV+EG  +F 
Sbjct: 309 VYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFE 368

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
           SM   YGI P ++HYGCMVDL GRAG LDEA  FI+ +P++     W  LL++C  + N+
Sbjct: 369 SMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNM 428

Query: 411 GLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEV 470
            + +    +I EL+  + G YV+LSN+ A +  W+ V  +R+ M  +GV K PGCS IEV
Sbjct: 429 EMGELASRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEV 488

Query: 471 NNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYH 530
              V EFF GD  H    ++Q  L E+ + LK+ GYV +T+ V   D+E+EEKE AL  H
Sbjct: 489 GGEVHEFFVGDKSHPRYAEIQVMLGEISRRLKLSGYVANTNPVFF-DIEEEEKEDALCMH 547

Query: 531 SEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           SEK+AI FGL++  P   IR+VKNLRVC
Sbjct: 548 SEKIAIAFGLISLSPDVPIRIVKNLRVC 575


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 227/589 (38%), Positives = 335/589 (56%), Gaps = 66/589 (11%)

Query: 32  TSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFN 91
           TS   LKQ+HAV ++T    D  V   L+  C  NP  S++  A  +F+ +P P++ +FN
Sbjct: 41  TSLHHLKQVHAVALRTGHFQDHYVSGTLVK-CYANPHFSNLNFALKVFEYVPNPNVFVFN 99

Query: 92  TMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAI 151
            + +G  ++  P +AI  + +++ +   P+ +++P+L KAC    AEA EEG Q+H   I
Sbjct: 100 IIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKAC--TAAEAAEEGVQVHAHVI 157

Query: 152 KLGL-------------------------------NSNLYVCTTLINLYAECSDVEAARR 180
           K GL                               NS++     +I+ Y +C +VEAA+ 
Sbjct: 158 KQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKE 217

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN-------------------- 220
           +F ++ +  V S+N +++  A+     EA  LF E++E+N                    
Sbjct: 218 LFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEA 277

Query: 221 -----------LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDM 269
                      ++P    + S L++CA LG+LD G+WIH Y+          + TAL+DM
Sbjct: 278 LEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDM 337

Query: 270 HAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITF 329
           +AKCGRLD A  VF+ M  K+   W+AMI     HG+   +I +F +M K +  P+ IT 
Sbjct: 338 YAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITL 397

Query: 330 LGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389
           LG+L AC+H+G+VDEG   F SM + YGI PG++HYGC+VDLLGRAG L EA   +  +P
Sbjct: 398 LGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMP 457

Query: 390 IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDY 449
           ++ +  +W  LL +C  H ++ L ++V + + EL+  + G Y +LSN+ ARAGRW+DV  
Sbjct: 458 MEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVAN 517

Query: 450 LRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPD 509
           +RKLMK+RGV    G S I+ + VV EF  GDG H    ++   L  ++K LKM G+ P+
Sbjct: 518 VRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKMEGFSPN 577

Query: 510 TSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           TS V   D+E+EEKE  L+YHSEKLAI FGL+NT PGTTI VVKNLR+C
Sbjct: 578 TSQVLF-DIEEEEKEAELQYHSEKLAIAFGLINTKPGTTIHVVKNLRMC 625


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/591 (37%), Positives = 347/591 (58%), Gaps = 42/591 (7%)

Query: 3   TTPSP---PITQSPPPKLCT-NTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTK 58
           + PSP   P + S P  L + +    +SLL R      +  IHA  I+     D  ++ +
Sbjct: 27  SGPSPKPHPNSNSNPKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFE 86

Query: 59  LINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118
           L+  C++     ++++A  +F     P++ L+  +  G+  S     AI L+  +L+  +
Sbjct: 87  LLRSCSK---CHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSI 143

Query: 119 LPDDYSFPSLLKACACVGAE-ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEA 177
           LPD+Y   S+LKAC   G++ AL EG+++H  A+KLGL+SN  V   ++ LY +C ++  
Sbjct: 144 LPDNYLMASILKAC---GSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGD 200

Query: 178 ARRIFENISEPCVVS------------------------------YNAIITAYARSSRPN 207
           ARR+FE + E  V S                              + A+I  + R+   N
Sbjct: 201 ARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMN 260

Query: 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267
            AL  FR +Q  N++P + T++  LS+C+ LG+L++G+W+H Y++K+ ++  + V  ALI
Sbjct: 261 RALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALI 320

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
           +M+++CG +D+A +VFD M  +D   ++ MI   + +G+  ++I +F  M+  ++ P  +
Sbjct: 321 NMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNV 380

Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
           TF+G+L ACSH GLVD G+  F+SM   YG+ P I+HYGCMVDLLGR GRL+EAY  I  
Sbjct: 381 TFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRT 440

Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447
           + +    I+  TLLS+C  H NL L +QV + + +   +  G YV+LS++ A +G+W++ 
Sbjct: 441 MKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEA 500

Query: 448 DYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYV 507
             +R  MK+ G+ K PGCSSIEVNN + EF  GD  H     + + L+EL + L++ GY 
Sbjct: 501 AQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYH 560

Query: 508 PDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           P+  +V   D+ED EKE AL  HSE+LAI +GL++T P T IRV+KNLRVC
Sbjct: 561 PEKEVVLQ-DIEDGEKEWALAIHSERLAICYGLISTEPCTVIRVMKNLRVC 610


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/481 (40%), Positives = 311/481 (64%), Gaps = 3/481 (0%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           +F+ +P+ DIV +NT+  G +++     A+ +  E+ N+ L PD ++  S+L   A    
Sbjct: 192 VFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFA--EY 249

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
             L +GK++H +AI+ G ++++++ ++LI++YA+C+ V+ + R+F  + +   +S+N+II
Sbjct: 250 VNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSII 309

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
               ++   +E L  F+++    +KP  V+  S + +CA L +L LGK +H YI +   D
Sbjct: 310 AGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFD 369

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
             V + +AL+DM+AKCG +  A  +FD M   D  +W+AMI+ YA HG  + +I +F+ M
Sbjct: 370 GNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRM 429

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
               V P+ + F+ +L ACSH GLVDE W YF SM   Y I+PG++HY  + DLLGR GR
Sbjct: 430 EVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGR 489

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437
           L+EAY FI ++ I+ T  +W TLL++C  H N+ LA++V +++F +D  + G YV+LSN+
Sbjct: 490 LEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNI 549

Query: 438 CARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDEL 497
            + AGRW+D   LR  M+D+G+ K P CS IE+ N V  F +GD  H Y   + +AL  L
Sbjct: 550 YSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVL 609

Query: 498 VKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRV 557
           +++++  GYV DT+ V H D+E+E+K   L  HSE+LAITFG+++TP GTTIRV KNLRV
Sbjct: 610 LEQMEREGYVLDTTEVLH-DVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRV 668

Query: 558 C 558
           C
Sbjct: 669 C 669



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 204/414 (49%), Gaps = 40/414 (9%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVL-FNTMARG 96
           KQ+HA  ++T L +   + T L  +   N    S+    L+F+ +P P   L + ++ R 
Sbjct: 25  KQLHAQILRTSLPSPSLLSTILSIYSNLNLLHDSL----LIFNSLPSPPTTLAWKSIIRC 80

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           Y+     + ++  F+++L SG  PD   FPS+LK+C  +  + L  G+ +H   I+LG+ 
Sbjct: 81  YTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLM--KDLRFGESVHGCIIRLGMG 138

Query: 157 SNLYVCTTLINLYAECSDVE-----------------------------AARRIFENISE 187
            +LY C  L+N+Y++   +E                             + R++FE + +
Sbjct: 139 FDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPK 198

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
             +VS+N +I+  A++    +AL + RE+   +L+P   T+ S L   A   +L  GK I
Sbjct: 199 RDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEI 258

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQG 307
           H Y  + G D  V + ++LIDM+AKC R+DD+  VF  +   D  +W+++I     +G  
Sbjct: 259 HGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMF 318

Query: 308 HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYG 366
            + +  F++M+ A++ P+ ++F  ++ AC+H   +  G   + Y +R ++     I    
Sbjct: 319 DEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIA--S 376

Query: 367 CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
            +VD+  + G +  A    D++ +    + W  ++   + H +   A  + +R+
Sbjct: 377 ALVDMYAKCGNIRTARWIFDKMELYDM-VSWTAMIMGYALHGHAYDAISLFKRM 429



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 52/273 (19%), Positives = 112/273 (41%), Gaps = 54/273 (19%)

Query: 16  KLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSM 72
           K+  N  +  S++P C     L   KQ+H   I++    ++ + + L++   +     ++
Sbjct: 332 KIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAK---CGNI 388

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
             A  +FD++   D+V +  M  GY+       AI LF  +   G+ P+  +F ++L AC
Sbjct: 389 RTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTAC 448

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE----- 187
           +  G                                      V+ A + F ++++     
Sbjct: 449 SHAGL-------------------------------------VDEAWKYFNSMTQDYRII 471

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
           P +  Y A+     R  R  EA     ++   +++PT     + L++C +  +++L + +
Sbjct: 472 PGLEHYAAVADLLGRVGRLEEAYEFISDM---HIEPTGSVWSTLLAACRVHKNIELAEKV 528

Query: 248 HEYIKKYGLD-KYVKVNTALIDMHAKCGRLDDA 279
            +  K + +D + +     L ++++  GR  DA
Sbjct: 529 SK--KLFTVDPQNIGAYVLLSNIYSAAGRWKDA 559


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/488 (39%), Positives = 309/488 (63%), Gaps = 3/488 (0%)

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130
           S++    +F+ +PE D+V +NT+  G +R+      + +  E+  + L PD ++  S+L 
Sbjct: 249 SVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLP 308

Query: 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV 190
             A      + +GK++H  +I+ GL++ +YV ++LI++YA+C+ V  + R+F  ++E   
Sbjct: 309 LIA--ENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDG 366

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY 250
           +S+N+II    ++   +E L  FR++    +KP   +  S + +CA L +L LGK +H Y
Sbjct: 367 ISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGY 426

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310
           I + G D+ + + ++L+DM+AKCG +  A  +FD M  +D  +W+AMI+  A HG    +
Sbjct: 427 ITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDA 486

Query: 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370
           I +FE+M    + P+ + F+ +L ACSH GLVDE W YF SM   +GI PG++HY  + D
Sbjct: 487 IELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSD 546

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430
           LLGRAGRL+EAY FI  +PI  T  +W TLLS+C  H N+ +A++V  RI E+D  + G 
Sbjct: 547 LLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGA 606

Query: 431 YVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDL 490
           Y++L+N+ + A RW++    R  ++  G+ K P CS IEV N V  F +GD  H     +
Sbjct: 607 YILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKI 666

Query: 491 QKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIR 550
           ++A++ L++ ++  GYVPDTS VHH D+E+E+K+  +  HSE+LAI FG++NTP GTTIR
Sbjct: 667 REAMEVLMELMEKEGYVPDTSEVHH-DVEEEQKKYLVCSHSERLAIVFGIINTPAGTTIR 725

Query: 551 VVKNLRVC 558
           V KNLRVC
Sbjct: 726 VTKNLRVC 733



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 150/331 (45%), Gaps = 22/331 (6%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           LF+ +  P  + + ++ R Y+    P +++  F+ +L SGL PD   FPS+LKACA +  
Sbjct: 64  LFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAML-- 121

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
             L  G+ LH + I++GL+ +LY    L+N+Y++   ++ + R  + +    V+     +
Sbjct: 122 MDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGR--QRLGASQVLDE---M 176

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
           T   RS R    L     +  +  K +D+   +   SC    S +    + E I      
Sbjct: 177 TERTRSVRTASVL-----VGNQGRKVSDIEAFNYDVSCR---SREFEAQVLE-IDYKPRS 227

Query: 258 KYVKVNTALIDMHAK----CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
           +Y ++    +    K       +D    +F+ M  KD  +W+ +I   A +G   +++ M
Sbjct: 228 EYREMEACNLGQQIKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTM 287

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
             EM  A + PD  T   +L   +    + +G    +    + G+   +     ++D+  
Sbjct: 288 VREMGGANLKPDSFTLSSVLPLIAENVDISKG-KEIHGCSIRQGLDAEVYVASSLIDMYA 346

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSC 404
           +  R+ ++YR +  L  +   I W ++++ C
Sbjct: 347 KCTRVVDSYR-VFTLLTERDGISWNSIIAGC 376



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 84/175 (48%), Gaps = 11/175 (6%)

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           + +QLH   +K   +S   + + L+++Y+  + +  + R+F  +  P  +++ ++I  Y 
Sbjct: 26  QAQQLHAQVLKFQASSLCNL-SLLLSIYSHINLLHDSLRLFNTLHFPPALAWKSVIRCYT 84

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
               P+++L  F  +    L P      S L +CA+L  L+LG+ +H YI + GLD  + 
Sbjct: 85  SHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGYIIRVGLDFDLY 144

Query: 262 VNTALIDMHAKCGRLDD-------AVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
              AL++M++K   L         A  V D M+ +     +A ++      QG K
Sbjct: 145 TGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTASVL---VGNQGRK 196



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           L D++ +F+ +      AW ++I  Y +HG  HKS+  F  M+ + + PD   F  +L A
Sbjct: 58  LHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKA 117

Query: 336 CS 337
           C+
Sbjct: 118 CA 119


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/472 (43%), Positives = 291/472 (61%), Gaps = 34/472 (7%)

Query: 118 LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEA 177
           +LPD ++   +LKAC  +    +  GK +H    KLG  SNL++   ++NLY  C ++  
Sbjct: 6   VLPDTFTCSFVLKAC--LKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGD 63

Query: 178 ARRIFENISEPCVVSYN-------------------------------AIITAYARSSRP 206
           A  +FE + +   V++N                               ++I+ + +  +P
Sbjct: 64  AMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKP 123

Query: 207 NEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
           NEA+ LF +L++  ++P +VT++S L++CA LG LDLG+ +HEY  K G  + V V   L
Sbjct: 124 NEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTL 183

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           IDM+ KCG L++A  VF  M  +   +WSAMI   A HGQ  +++ +F EM+K  V P+ 
Sbjct: 184 IDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNG 243

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
           +TF+GLL+ACSH GL+DEG  +F SM   YG++P I+HYGC+VDL  RAG L+EA+ FI 
Sbjct: 244 VTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFIL 303

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWED 446
            +PIK   ++W  LL  C  H N+ LA++ I+ + ELD  + G YV++SN+ A A RWED
Sbjct: 304 SMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWED 363

Query: 447 VDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGY 506
              +RKLMKDRGV K  G SSI VN VV EF +GD  H  + D+ K  D+L+ ++K  GY
Sbjct: 364 AARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLLVKMKRRGY 423

Query: 507 VPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            P TS+V   DME++EKE  L  HSEKLA+ FGL+ TP GT IR++KNLRVC
Sbjct: 424 APKTSVVLL-DMEEKEKEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRVC 474



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 139/258 (53%), Gaps = 8/258 (3%)

Query: 64  TQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDY 123
            Q      ++ A+  F R+P  ++  + +M  G+ +   P  AI LF++L +  + P++ 
Sbjct: 84  AQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEV 143

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           +  S+L ACA +G   L+ G+ +H ++ K G   N++VC TLI++Y +C  +E ARR+F 
Sbjct: 144 TVVSVLAACADLG--DLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFY 201

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
            + E  VVS++A+I   A   +  EAL LF E+ +  +KP  VT +  L +C+ +G +D 
Sbjct: 202 EMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDE 261

Query: 244 G-KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAY 301
           G ++       YG+   ++    ++D+ ++ G L++A     +M  K +   W A++   
Sbjct: 262 GRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGC 321

Query: 302 ATHGQGHKSILMFEEMMK 319
                 HK+I + EE +K
Sbjct: 322 KV----HKNIDLAEEAIK 335


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/508 (39%), Positives = 308/508 (60%), Gaps = 41/508 (8%)

Query: 27  LLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPD 86
           +L  C +   LK+IHA  +K  L     ++TK+++ C  +  T   E+A+LLF R+ +P+
Sbjct: 20  ILKNCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHHAET---EYANLLFKRVADPN 76

Query: 87  IVLFNTMARGYSRSKTPIRAIFLFVELLNSG-----LLPDDYSFPSLLKACACVGAEALE 141
             L+N M R Y  +K  + AI ++ ++L        + PD ++FP ++K+CA  G    +
Sbjct: 77  AFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCA--GLMCYD 134

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN------- 194
            GKQ+H    K G  SN  V  +L+ +Y +C  ++ A ++FE ++E   VS+N       
Sbjct: 135 LGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHV 194

Query: 195 ------------------------AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLS 230
                                   AI++ YAR     +AL  FR +Q   ++P +++++S
Sbjct: 195 RLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVS 254

Query: 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290
            L +CA LG+L+LGKWIH Y  K G  + + V  ALI+M+AKCG +D+   +FD M+ +D
Sbjct: 255 VLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERD 314

Query: 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350
             +WS MIV  A HG+ H++I +F+EM KA++ P+ ITF+GLL AC+H GL++EG  YF 
Sbjct: 315 VISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFE 374

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
           SM+  Y I PG++HYGC+V+LLG +GRLD+A   I ++P+K    +W +LLSSC SH+NL
Sbjct: 375 SMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNL 434

Query: 411 GLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEV 470
            +A   +E + EL+ +  G+YV+LSNL A  G+W+ V  +RKLM+ + + K PGCSSIEV
Sbjct: 435 EIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEV 494

Query: 471 NNVVREFFSGDGVHSYSTDLQKALDELV 498
           +N+V+EF SGD    +S  + + L  LV
Sbjct: 495 DNMVQEFASGDDSKPFSKAIYRVLKLLV 522



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 176/377 (46%), Gaps = 53/377 (14%)

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
           F  +LK C  +      E K++H   +K  L+ + ++ T ++++    ++ E A  +F+ 
Sbjct: 17  FVPILKNCPNI-----VELKKIHAHIVKFSLSQSSFLVTKMVDVCNHHAETEYANLLFKR 71

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFREL-----QERNLKPTDVTMLSALSSCALLG 239
           +++P    YNA+I AY  +     A+++++++      E  + P   T    + SCA L 
Sbjct: 72  VADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLM 131

Query: 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIV 299
             DLGK +H ++ K+G      V  +L++M+ KC  LDDA  VF+ M+ +D  +W+ +I 
Sbjct: 132 CYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLIS 191

Query: 300 AYATHGQGHKSILMFEEMMKAQ-------------------------------VSPDEIT 328
            +   GQ  ++  +FEEM                                   + PDEI+
Sbjct: 192 GHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEIS 251

Query: 329 FLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
            + +L AC+  G ++ G W +FY+  DK G +  I     ++++  + G +DE  R  D+
Sbjct: 252 LVSVLPACAQLGALELGKWIHFYA--DKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQ 309

Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI----LSNLCARAGR 443
           +  +   I W T++   ++H   G A + IE   E+  +     +I    L + CA AG 
Sbjct: 310 MNERDV-ISWSTMIVGLANH---GRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGL 365

Query: 444 W-EDVDYLRKLMKDRGV 459
             E + Y   + +D  +
Sbjct: 366 LNEGLRYFESMKRDYNI 382


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/562 (37%), Positives = 329/562 (58%), Gaps = 18/562 (3%)

Query: 12  SPPPKLCTNTPNALSLLPRCTSFRGLK----QIHAVTIKTHLQNDLNVLTKLINFCTQNP 67
           S P   C++   +L    +  +  GL+     +HA+ +++    D      L+N   + P
Sbjct: 48  SDPAAACSSVLTSLPGALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLP 107

Query: 68  TTSS-----------MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS 116
              S           +E    +FD +PE D+V +NT+  G + S     A+ L  E+   
Sbjct: 108 APPSHSPEMDGSAVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRD 167

Query: 117 GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVE 176
           G  PD ++  S+L   A  GA+ +  G +LH FA + G + +++V ++LI++YA C+  +
Sbjct: 168 GCKPDSFTLSSVLPIFA-EGAD-VRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTD 225

Query: 177 AARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236
            + ++F+N+     + +N+++   A++   +EAL LFR +    +KP  VT  S + +C 
Sbjct: 226 YSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACG 285

Query: 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSA 296
            L SL LGK +H Y+ + G D  V ++++LIDM+ KCG +  A  +FD +   D  +W+A
Sbjct: 286 NLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTA 345

Query: 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKY 356
           MI+ +A HG   +++++F+ M    + P+ ITFL +L ACSH GLVD+GW YF SM D Y
Sbjct: 346 MIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHY 405

Query: 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQV 416
           GIVP ++H+  + D LGR G+L+EAY FI  + IK T  +W TLL +C  H N  LA++V
Sbjct: 406 GIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEV 465

Query: 417 IERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVRE 476
            ++IF+L+    G ++ILSN  + +GRW +  +LRK M+ +G+ K P CS IEV N    
Sbjct: 466 AKKIFDLEPRSMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHV 525

Query: 477 FFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAI 536
           F + D  H +   +  AL+   +++   GYVP+T  V   D+E+E+K   L  HSEKLAI
Sbjct: 526 FVAHDKSHPWYERIIDALNVFSEQMVRQGYVPNTDDVFQ-DIEEEQKNSVLCGHSEKLAI 584

Query: 537 TFGLLNTPPGTTIRVVKNLRVC 558
            FG+++TPPGTTIRV+KNLRVC
Sbjct: 585 VFGIISTPPGTTIRVMKNLRVC 606


>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/542 (37%), Positives = 327/542 (60%), Gaps = 6/542 (1%)

Query: 19  TNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLL 78
           +N    L+LL  C S + L++IHA  I + L + + +  KL+NFC  +  + S+ +A LL
Sbjct: 2   SNEKAILALLQGCNSLKRLRKIHAHVIVSGLHHHVPIANKLLNFCAIS-VSGSLAYAQLL 60

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL-NSGLLPDDYSFPSLLKACACVGA 137
           F ++  P    +N++ RG+++S +PI AI  + +++ +S  +PD ++F  +LKAC  + A
Sbjct: 61  FHQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKA 120

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
           E   + K++H   I+ G ++++ VCT L+  Y+    V  AR++F+ +    +V++NA+I
Sbjct: 121 E--RKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNAMI 178

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
           + +++     EAL  + +++  N+     T++  +SSCA LG+L++G  +H + ++ GLD
Sbjct: 179 SCFSQQGLHQEALQTYNQMRSENVDIDGFTLVGLISSCAHLGALNIGVQMHRFARENGLD 238

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
           + + V  ALIDM+AKCG LD A+ +FD M  KD   W++MIV Y  HG+G ++I  F++M
Sbjct: 239 QSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQM 298

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
           ++A++ P+ +TFLGLL  CSH GLV EG  YF  M  K+ + P +KHYGC+VDL GRAG+
Sbjct: 299 LEARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGK 358

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437
           LD+A   +      +  +LWR LL SC  H N+ + +  + R+ EL  +  GD ++L+ +
Sbjct: 359 LDKALEIVSNSS-HNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELGATSAGDCILLATI 417

Query: 438 CARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDEL 497
            A       V  +RK++K +G    PG S IE+   V +F   D  H YS ++ + L E+
Sbjct: 418 YAGEKDKAGVARMRKMIKSQGKKTTPGWSWIEIGEQVHKFVVDDKSHRYSVEVYEKLREV 477

Query: 498 VKELKMVGYVPDTSLVHHGDMEDEEK-EIALRYHSEKLAITFGLLNTPPGTTIRVVKNLR 556
           + +    GYV D S+     +   E  + +  YHSEKLAI FGL  T  GT IR+VKNLR
Sbjct: 478 IHQASFFGYVGDESISSLDMLSTMETLKTSCTYHSEKLAIAFGLARTADGTQIRIVKNLR 537

Query: 557 VC 558
           VC
Sbjct: 538 VC 539


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/468 (42%), Positives = 295/468 (63%), Gaps = 3/468 (0%)

Query: 91  NTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFA 150
           N+M R Y      + ++++F  +    +LPD  +FP++LKA A +    +  GK +H   
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGV--GKMIHGIV 115

Query: 151 IKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEAL 210
           I++G   ++Y  T L++LY  C  +  A ++F+ + E   V++NA+IT Y  + +  +A+
Sbjct: 116 IQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAI 175

Query: 211 SLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270
             FR +     +P++ T++  LS+C+ LG+ + GKWIHE+I    L   V V TALIDM+
Sbjct: 176 DAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMY 235

Query: 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           AKCG + +   VF+ +  K+   W+ +I  YA +GQG  ++  F  M+     PDE+TFL
Sbjct: 236 AKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFL 295

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
           G+L AC H GLV EG   F SM+ ++G+ P I+HYGCMVDLLGRAG L+EA   I  + I
Sbjct: 296 GVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSI 355

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL 450
           +  PI+WR LL +C  H N  L + +I+R+ EL+ ++G +YV+LSN+ +R  RW +V  L
Sbjct: 356 EPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKL 415

Query: 451 RKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT 510
           R +M  RG+ KVPGCSSIE+NNVV EF + +        + K LD L+K+LK  GYV  T
Sbjct: 416 RGMMNLRGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGT 475

Query: 511 SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +  + D+E EEKE ++ YHSEKLA+ FGLLN+P   T+R+VKNLR+C
Sbjct: 476 DMALY-DIEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRIC 522



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 143/271 (52%), Gaps = 9/271 (3%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           K IH + I+     D+   T L++ +CT      S+  A  LFD +PE + V +N +  G
Sbjct: 109 KMIHGIVIQMGFICDVYTSTALVHLYCT----CLSISDASQLFDEMPERNAVTWNALITG 164

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           Y+ ++  ++AI  F  +L  G  P + +   +L AC+ +G  A  +GK +H F     L 
Sbjct: 165 YTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLG--AFNQGKWIHEFIYHNRLR 222

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            N++V T LI++YA+C  V    ++FE I E  V ++N +I+ YA + + + AL  F  +
Sbjct: 223 LNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRM 282

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK-KYGLDKYVKVNTALIDMHAKCGR 275
              N KP +VT L  L +C   G +  G+W    +K ++GL   ++    ++D+  + G 
Sbjct: 283 LMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGL 342

Query: 276 LDDAVSVFDNMSGK-DTQAWSAMIVAYATHG 305
           L++A+ +  +MS + D   W A++ A   HG
Sbjct: 343 LEEALELIQSMSIEPDPIIWRALLCACRVHG 373


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/468 (42%), Positives = 295/468 (63%), Gaps = 3/468 (0%)

Query: 91  NTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFA 150
           N+M R Y      + ++++F  +    +LPD  +FP++LKA A +    +  GK +H   
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGV--GKMIHGIV 115

Query: 151 IKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEAL 210
           I++G   ++Y  T L++LY  C  +  A ++F+ + E   V++NA+IT Y  + +  +A+
Sbjct: 116 IQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAI 175

Query: 211 SLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270
             FR +     +P++ T++  LS+C+ LG+ + GKWIHE+I    L   V V TALIDM+
Sbjct: 176 DAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMY 235

Query: 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           AKCG + +   VF+ +  K+   W+ +I  YA +GQG  ++  F  M+     PDE+TFL
Sbjct: 236 AKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFL 295

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
           G+L AC H GLV EG   F SM+ ++G+ P I+HYGCMVDLLGRAG L+EA   I  + I
Sbjct: 296 GVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSI 355

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL 450
           +  PI+WR LL +C  H N  L + +I+R+ EL+ ++G +YV+LSN+ +R  RW +V  L
Sbjct: 356 EPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKL 415

Query: 451 RKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT 510
           R +M  RG+ KVPGCSSIE+NNVV EF + +        + K LD L+K+LK  GYV  T
Sbjct: 416 RGMMSLRGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGT 475

Query: 511 SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +  + D+E EEKE ++ YHSEKLA+ FGLLN+P   T+R+VKNLR+C
Sbjct: 476 DMALY-DIEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRIC 522



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 143/271 (52%), Gaps = 9/271 (3%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           K IH + I+     D+   T L++ +CT      S+  A  LFD +PE + V +N +  G
Sbjct: 109 KMIHGIVIQMGFICDVYTSTALVHLYCT----CLSISDASQLFDEMPERNAVTWNALITG 164

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           Y+ ++  ++AI  F  +L  G  P + +   +L AC+ +G  A  +GK +H F     L 
Sbjct: 165 YTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLG--AFNQGKWIHEFIYHNRLR 222

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            N++V T LI++YA+C  V    ++FE I E  V ++N +I+ YA + + + AL  F  +
Sbjct: 223 LNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRM 282

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK-KYGLDKYVKVNTALIDMHAKCGR 275
              N KP +VT L  L +C   G +  G+W    +K ++GL   ++    ++D+  + G 
Sbjct: 283 LMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGL 342

Query: 276 LDDAVSVFDNMSGK-DTQAWSAMIVAYATHG 305
           L++A+ +  +MS + D   W A++ A   HG
Sbjct: 343 LEEALELIQSMSIEPDPIIWRALLCACRVHG 373


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/561 (38%), Positives = 337/561 (60%), Gaps = 10/561 (1%)

Query: 1   MATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLT 57
            AT   P       P   +N     SLL  C S + L   KQ+HA   +  +  +L++ T
Sbjct: 38  FATQLIPQHKVDSFPSSPSNHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLAT 97

Query: 58  KLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSG 117
           KL+NF +     +S+ +AH LFD+IP+ ++ L+N + R Y+ +     AI L+ ++L  G
Sbjct: 98  KLVNFYS---VCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYG 154

Query: 118 LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEA 177
           L PD+++ P +LKAC+ +    + EG+ +H   I+ G   +++V   L+++YA+C  V  
Sbjct: 155 LKPDNFTLPFVLKACSAL--STIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVD 212

Query: 178 ARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL 237
           AR +F+ I +   V +N+++ AYA++  P+E+LSL  E+  + ++PT+ T+++ +SS A 
Sbjct: 213 ARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSAD 272

Query: 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297
           +  L  G+ IH +  ++G     KV TALIDM+AKCG +  A  +F+ +  K   +W+A+
Sbjct: 273 IACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAI 332

Query: 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG 357
           I  YA HG   +++ +FE MMK +  PD ITF+G L ACS   L+DEG   +  M     
Sbjct: 333 ITGYAMHGLAVEALDLFERMMK-EAQPDHITFVGALAACSRGRLLDEGRALYNLMVRDCR 391

Query: 358 IVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
           I P ++HY CMVDLLG  G+LDEAY  I ++ +     +W  LL+SC +H N+ LA+  +
Sbjct: 392 INPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVAL 451

Query: 418 ERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREF 477
           E++ EL+    G+YVIL+N+ A++G+WE V  LR+LM D+G+ K   CS IEV N V  F
Sbjct: 452 EKLIELEPDDSGNYVILANMYAQSGKWEGVARLRQLMIDKGIKKNIACSWIEVKNKVYAF 511

Query: 478 FSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAIT 537
            SGD  H  S  +   L  L   ++  GYVPDT  V H D+E++EK   +  HSE+LAI 
Sbjct: 512 LSGDVSHPNSGAIYAELKRLEGLMREAGYVPDTGSVFH-DVEEDEKTDMVCSHSERLAIA 570

Query: 538 FGLLNTPPGTTIRVVKNLRVC 558
           FGL++T PGT + + KNLR+C
Sbjct: 571 FGLISTLPGTRLLITKNLRIC 591


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/481 (40%), Positives = 306/481 (63%), Gaps = 3/481 (0%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           +F+ +PE D+V +NT+  G +R+      + +  E+  + L PD ++  S+L   A    
Sbjct: 195 IFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIA--EN 252

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
             +  GK++H  +I+ GL++++YV ++LI++YA+C+ V  + R+F  ++E   +S+N+II
Sbjct: 253 VDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSII 312

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
               ++   +E L  FR++    +KP   +  S + +CA L +L LGK +H YI + G D
Sbjct: 313 AGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFD 372

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
           + + + ++L+DM+AKCG +  A  +FD M  +D  +W+AMI+  A HGQ   +I +FE+M
Sbjct: 373 ENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQM 432

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
               + P+ + F+ +L ACSH GLVDE W YF SM   +GI PG++HY  + DLLGRAGR
Sbjct: 433 ETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGR 492

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437
           L+EAY FI  + I  T  +W TLLS+C  H N+ +A++V  RI E+D ++ G Y++L+N+
Sbjct: 493 LEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNNTGAYILLANI 552

Query: 438 CARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDEL 497
            + A RW++    R  M+  G+ K P CS IEV N V  F +GD  H     +++A++ L
Sbjct: 553 YSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVL 612

Query: 498 VKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRV 557
           V+ ++  GYVPDTS VHH D+E+E+K+  +  HSE+LAI FG++NTP G TIRV KNLRV
Sbjct: 613 VELMEKEGYVPDTSEVHH-DVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLRV 671

Query: 558 C 558
           C
Sbjct: 672 C 672



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/425 (26%), Positives = 201/425 (47%), Gaps = 48/425 (11%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           LF+ I  P  + + ++ R Y+    P +++  F+ +L SGL PD   FPS+LK+CA +  
Sbjct: 62  LFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALL-- 119

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVE--------------------- 176
             L  G+ LH + I++GL+ +LY    L+N+Y++   +E                     
Sbjct: 120 MDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTR 179

Query: 177 -----------AARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTD 225
                      + R+IFE + E  +VS+N II   AR+    E L + RE+   NLKP  
Sbjct: 180 SVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDS 239

Query: 226 VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285
            T+ S L   A    +  GK IH    + GLD  + V ++LIDM+AKC R+ D+  VF  
Sbjct: 240 FTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTL 299

Query: 286 MSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
           ++ +D  +W+++I     +G   + +  F +M+ A++ P   +F  ++ AC+H   +  G
Sbjct: 300 LTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLG 359

Query: 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS 405
               +    + G    I     +VD+  + G +  A +  D + ++   + W  ++  C+
Sbjct: 360 -KQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDM-VSWTAMIMGCA 417

Query: 406 SHNNLGLAKQVIERIFELDDSHGGD-----YVILSNLCARAGRWEDV-DYLRKLMKDRGV 459
            H   G A   IE +FE  ++ G       ++ +   C+  G  ++   Y   + +D G+
Sbjct: 418 LH---GQAPDAIE-LFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGI 473

Query: 460 LKVPG 464
              PG
Sbjct: 474 --APG 476



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 130/295 (44%), Gaps = 35/295 (11%)

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           + +QLH   +K   +S   + + L+++Y+  + +  + R+F  I  P  +++ ++I  Y 
Sbjct: 24  QAQQLHAQVLKFQASSLCNL-SLLLSIYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYT 82

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
               P+++L  F  +    L P      S L SCALL  L+LG+ +H YI + GLD  + 
Sbjct: 83  SHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLY 142

Query: 262 VNTALIDMHAKCGRLDD-------AVSVFDNMS-------------------------GK 289
              AL++M++K   L++       A  VFD M+                          K
Sbjct: 143 TGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEK 202

Query: 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYF 349
           D  +W+ +I   A +G   +++ M  EM  A + PD  T   +L   +    +  G    
Sbjct: 203 DLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRG-KEI 261

Query: 350 YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSC 404
           +    + G+   I     ++D+  +  R+ ++ R +  L  +   I W ++++ C
Sbjct: 262 HGCSIRQGLDADIYVASSLIDMYAKCTRVADSCR-VFTLLTERDGISWNSIIAGC 315


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/539 (38%), Positives = 324/539 (60%), Gaps = 14/539 (2%)

Query: 27  LLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           LL RCT    LKQ   +H   + +  +NDL +   ++    +     S+E A  +FD + 
Sbjct: 97  LLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAK---CGSLEIARQVFDEMC 153

Query: 84  EPDIVLFNTMARGYSR---SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEAL 140
             D+V + +M  GYS+   + +   A+ LF+E++  GL P++++  SL+K C  +G+   
Sbjct: 154 VKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGS--C 211

Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY 200
            +GKQ+H    K G   N++V ++L+++YA C ++  +R +F+ +     VS+NA+I+ +
Sbjct: 212 VDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGF 271

Query: 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
           AR     EAL LF ++Q      T+ T  + L S +  GSL+ GKW+H ++ K G     
Sbjct: 272 ARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVG 331

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM-K 319
            V   L+ M+AK G + DA  VFD +   D  + ++M++ YA HG G +++ +FEEMM  
Sbjct: 332 YVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLW 391

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
            ++ P++ITFL +L ACSH GL+DEG  YF  M+ KYG+ P + HY  +VDL GRAG LD
Sbjct: 392 VEIEPNDITFLSVLTACSHAGLLDEGLYYFELMK-KYGLEPKLSHYTTVVDLFGRAGLLD 450

Query: 380 EAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439
           +A  FI+E+PI+    +W  LL +   H N  +     +++ ELD  + G + +LSN+ A
Sbjct: 451 QAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTLLSNIYA 510

Query: 440 RAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVK 499
            AG+W+DV  +RK MKD G+ K P CS +E+ N V  F + D  H     + +  + L +
Sbjct: 511 SAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSANDISHPQKNKVYEMWENLNQ 570

Query: 500 ELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           ++K +GYVPDTS VH   ++ +EKE+ L+YHSEKLA+ F LLNT PG+ IR++KN+RVC
Sbjct: 571 KIKEIGYVPDTSHVHVF-VDQQEKELNLQYHSEKLALAFALLNTKPGSVIRIMKNIRVC 628



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/359 (28%), Positives = 193/359 (53%), Gaps = 18/359 (5%)

Query: 111 VELLNSGLL-PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLY 169
           ++L+N+G L PD   +  LLK C  +G   L++GK +H   +     ++L +  +++ +Y
Sbjct: 79  LDLINNGSLEPDRTIYNKLLKRCTMLG--KLKQGKLVHTHLMNSKFRNDLVIKNSILFMY 136

Query: 170 AECSDVEAARRIFENISEPCVVSYNAIITAYAR---SSRPNEALSLFRELQERNLKPTDV 226
           A+C  +E AR++F+ +    VV++ ++IT Y++   +S    AL LF E+    L+P + 
Sbjct: 137 AKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEF 196

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
            + S +  C  LGS   GK IH    KYG  + V V ++L+DM+A+CG L ++  VFD +
Sbjct: 197 ALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDEL 256

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG- 345
             K+  +W+A+I  +A  G+G +++ +F +M +      E T+  LL + S TG +++G 
Sbjct: 257 ESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGK 316

Query: 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS 405
           W + + M+    +V  + +   ++ +  ++G + +A +  D L +K   +   ++L   +
Sbjct: 317 WLHAHMMKSGKKLVGYVGN--TLLHMYAKSGNICDAKKVFDRL-VKVDVVSCNSMLIGYA 373

Query: 406 SHNNLGLAKQVIERIFEL---DDSHGGDYVILSNL--CARAGRWEDVDYLRKLMKDRGV 459
            H   GL K+ +E   E+    +    D   LS L  C+ AG  ++  Y  +LMK  G+
Sbjct: 374 QH---GLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKKYGL 429



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 7/205 (3%)

Query: 203 SSRPNE--ALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
           S  PN    L +   +   +L+P        L  C +LG L  GK +H ++        +
Sbjct: 67  SLNPNSTTGLHVLDLINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDL 126

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK---SILMFEEM 317
            +  +++ M+AKCG L+ A  VFD M  KD   W++MI  Y+  G       ++++F EM
Sbjct: 127 VIKNSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEM 186

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
           ++  + P+E     L+  C   G   +G    +    KYG    +     +VD+  R G 
Sbjct: 187 VRDGLRPNEFALSSLVKCCGFLGSCVDG-KQIHGCCWKYGFQENVFVGSSLVDMYARCGE 245

Query: 378 LDEAYRFIDELPIKSTPILWRTLLS 402
           L E+    DEL  K+  + W  L+S
Sbjct: 246 LRESRLVFDELESKN-EVSWNALIS 269


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/546 (37%), Positives = 332/546 (60%), Gaps = 13/546 (2%)

Query: 20  NTPNAL---SLLPRCT---SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSME 73
           N P+     SLL  C     F+  K +H   +K  L +DL + T L+N          ++
Sbjct: 75  NVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNM---YAACGDLK 131

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
            A  LF+R+   + V++ +M  GY ++  P  A+ L+ ++   G  PD+ +  +L+ ACA
Sbjct: 132 SARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACA 191

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
            +  + L  G +LH    ++ +     + + L+N+YA+C D++ AR++F+ +S+  V ++
Sbjct: 192 EL--KDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAW 249

Query: 194 NAIITAYARSSRPNEALSLFRELQE-RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +A+I  Y +++R  EAL LFRE+    N++P +VT+L+ +S+CA LG L+ G+W+H+YI 
Sbjct: 250 SALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYIT 309

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           +      V +N +LIDM +KCG +D A  +FD+MS KD  +W++M+   A HG G +++ 
Sbjct: 310 RTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALA 369

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
            F  M    + PDEITF+G+L ACSH GLV EG   FY +   YG+    +HYGCMVDLL
Sbjct: 370 QFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLL 429

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432
            RAG L EA  FI  +P++    +W ++L +C  +NNL L ++    + EL+ ++ G Y+
Sbjct: 430 CRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYI 489

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
           +LSN+ AR   W +V  +R+LM ++G+ K PGCSS+ ++N+   F +GD  H    ++  
Sbjct: 490 LLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISI 549

Query: 493 ALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVV 552
            L ++ ++LK+VGYV DTS V   +++D +KE ++  HSEKLA+ +GLL +  G  I ++
Sbjct: 550 MLRQVREKLKLVGYVADTSEVLL-NIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVIL 608

Query: 553 KNLRVC 558
           KNLRVC
Sbjct: 609 KNLRVC 614



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 113/350 (32%), Positives = 202/350 (57%), Gaps = 11/350 (3%)

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN-SGLLPDDYSFPSLLKAC 132
           +A+ +F      D++ +N+M R +  S  P RA+  + E+L  S  +PD ++FPSLLK C
Sbjct: 30  YAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGC 89

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
           A +     + GK LH   +K  L+S+LY+ TTL+N+YA C D+++AR +FE +     V 
Sbjct: 90  ALL--LEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVV 147

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           + ++I+ Y ++  PNEAL L+++++E    P +VTM + +S+CA L  L +G  +H +I+
Sbjct: 148 WTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIR 207

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           +  +     + +AL++M+AKCG L  A  VFD +S KD  AWSA+I  Y  + +  +++ 
Sbjct: 208 EMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQ 267

Query: 313 MFEEMM-KAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVD 370
           +F E+   + + P+E+T L ++ AC+  G ++ G W + Y  R + G    +     ++D
Sbjct: 268 LFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKG--HSVSLNNSLID 325

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
           +  + G +D A R  D +  K   I W ++++  + H   GL ++ + + 
Sbjct: 326 MFSKCGDIDAAKRIFDSMSYKDL-ISWNSMVNGLALH---GLGREALAQF 371



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 147/319 (46%), Gaps = 26/319 (8%)

Query: 175 VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK-PTDVTMLSALS 233
           V  A  +F +     V+++N+++ A+  S+ P  AL  + E+ ER+   P   T  S L 
Sbjct: 28  VGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLK 87

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
            CALL    +GK +H  + KY L   + + T L++M+A CG L  A  +F+ M  ++   
Sbjct: 88  GCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVV 147

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           W++MI  Y  +   ++++L++++M +   SPDE+T   L+ AC+    +  G      +R
Sbjct: 148 WTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIR 207

Query: 354 D---KYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
           +   K   V G      +V++  + G L  A +  D+L  K     W  L+     +N  
Sbjct: 208 EMDMKICAVLG----SALVNMYAKCGDLKTARQVFDQLSDKDV-YAWSALIFGYVKNNRS 262

Query: 411 GLAKQVIERIFELDDSHGGDYVILSNLCARA-------GRWEDVDYLRKLMKDRGVLKVP 463
             A Q+   +    +    +  IL+ + A A       GRW   DY+ +  K        
Sbjct: 263 TEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVH-DYITRTQKGH------ 315

Query: 464 GCSSIEVNNVVREFFSGDG 482
              S+ +NN + + FS  G
Sbjct: 316 ---SVSLNNSLIDMFSKCG 331


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/542 (40%), Positives = 318/542 (58%), Gaps = 10/542 (1%)

Query: 20  NTPNALSLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N    +S+L  C+    LKQ   IH   IK     D  V T L++   +     S+  A 
Sbjct: 406 NRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAK---CGSLMDAR 462

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +F+RI + ++V +N M   Y + +    A+  F  LL  G+ PD  +F S+L  C    
Sbjct: 463 NVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCK--S 520

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
            +ALE GK +    I+ G  S+L++   L++++  C D+ +A  +F ++ E  +VS+N I
Sbjct: 521 PDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTI 580

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           I  + +      A   F+ +QE  +KP  +T    L++CA   +L  G+ +H  I +  L
Sbjct: 581 IAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAAL 640

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
           D  V V T LI M+ KCG +DDA  VF N+  K+  +W++MI  YA HG+G +++ +F +
Sbjct: 641 DCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQ 700

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M +  V PD ITF+G L AC+H GL+ EG ++F SM+D + I P ++HYGCMVDL GRAG
Sbjct: 701 MQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKD-FNIEPRMEHYGCMVDLFGRAG 759

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSN 436
            L EA  FI+++ +K    LW  LL +C  H ++ LA++V ++  ELD +  G YVILSN
Sbjct: 760 LLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSN 819

Query: 437 LCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDE 496
           + A AG W++V  +RK+M DRGV+K PG S IEV+  V  F S D  H    ++   L  
Sbjct: 820 IYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDKTHPQIEEIHAELGR 879

Query: 497 LVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLR 556
           L  E+K +GYVPDT  V H D+ED EKE AL +HSE+LAI +GLL TPP T I + KNLR
Sbjct: 880 LHMEMKKLGYVPDTRYVLH-DVEDSEKEHALCHHSERLAIAYGLLKTPPLTPIVISKNLR 938

Query: 557 VC 558
           VC
Sbjct: 939 VC 940



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 212/385 (55%), Gaps = 10/385 (2%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           SLL  C   + L   ++IH     + +Q D+ +   LI+   +   T+S   A  +FD +
Sbjct: 109 SLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNS---AKQIFDEM 165

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           P+ D+  +N +  GY + +    A  L  +++  G+ PD Y+F  +L ACA   A+ +++
Sbjct: 166 PDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACA--DAKNVDK 223

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G +L    +  G +++L+V T LIN++ +C  V+ A ++F N+    ++++ ++IT  AR
Sbjct: 224 GGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLAR 283

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
             +  +A +LF+ ++E  ++P  V  +S L +C    +L+ GK +H  +K+ GLD  + V
Sbjct: 284 HRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYV 343

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
            TAL+ M+ KCG ++DA+ VF+ + G++  +W+AMI  +A HG+  ++ L F +M+++ +
Sbjct: 344 GTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGI 403

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            P+ +TF+ +L ACS    + +G    +    K G +   +    ++ +  + G L +A 
Sbjct: 404 EPNRVTFMSILGACSRPSALKQG-RQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDA- 461

Query: 383 RFIDELPIKSTPILWRTLLSSCSSH 407
           R + E   K   + W  ++++   H
Sbjct: 462 RNVFERISKQNVVAWNAMITAYVQH 486



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 111/369 (30%), Positives = 194/369 (52%), Gaps = 7/369 (1%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           ++ ++ +      DL V T LIN    +     ++ A  +F+ +P  D++ + +M  G +
Sbjct: 226 ELFSLILNAGWDTDLFVGTALINM---HIKCGGVDDALKVFNNLPRRDLITWTSMITGLA 282

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
           R +   +A  LF  +   G+ PD  +F SLLKAC     EALE+GK++H    ++GL++ 
Sbjct: 283 RHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACN--HPEALEQGKRVHARMKEVGLDTE 340

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
           +YV T L+++Y +C  +E A  +F  +    VVS+ A+I  +A+  R  EA   F ++ E
Sbjct: 341 IYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIE 400

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
             ++P  VT +S L +C+   +L  G+ IH+ I K G     +V TAL+ M+AKCG L D
Sbjct: 401 SGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMD 460

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A +VF+ +S ++  AW+AMI AY  H +   ++  F+ ++K  + PD  TF  +L  C  
Sbjct: 461 ARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKS 520

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
              ++ G  +  S+  + G    +     +V +    G L  A    +++P +   + W 
Sbjct: 521 PDALELG-KWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDL-VSWN 578

Query: 399 TLLSSCSSH 407
           T+++    H
Sbjct: 579 TIIAGFVQH 587



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 170/332 (51%), Gaps = 35/332 (10%)

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           ++ SLL+ C  +  + L +G+++H       +  ++++   LI++YA+C +  +A++IF+
Sbjct: 106 TYSSLLQLC--IKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFD 163

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
            + +  V S+N ++  Y +  R  EA  L  ++ +  +KP   T +  L++CA   ++D 
Sbjct: 164 EMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDK 223

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303
           G  +   I   G D  + V TALI+MH KCG +DDA+ VF+N+  +D   W++MI   A 
Sbjct: 224 GGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLAR 283

Query: 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK-------- 355
           H Q  ++  +F+ M +  V PD++ F+ LL AC+H   +++G      M++         
Sbjct: 284 HRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYV 343

Query: 356 --------------------YGIVPG--IKHYGCMVDLLGRAGRLDEAYRFIDEL---PI 390
                               + +V G  +  +  M+    + GR++EA+ F +++    I
Sbjct: 344 GTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGI 403

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
           +   + + ++L +CS  + L   +Q+ +RI +
Sbjct: 404 EPNRVTFMSILGACSRPSALKQGRQIHDRIIK 435



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 109/220 (49%), Gaps = 2/220 (0%)

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           NA +   +++ + +EA+ +   +   +++    T  S L  C    +L  G+ IH +IK 
Sbjct: 73  NAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKF 132

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
             +   + +   LI M+AKCG  + A  +FD M  KD  +W+ ++  Y  H +  ++  +
Sbjct: 133 SKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRL 192

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
            E+M++  V PD+ TF+ +L AC+    VD+G   F S+    G    +     ++++  
Sbjct: 193 HEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELF-SLILNAGWDTDLFVGTALINMHI 251

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413
           + G +D+A +  + LP +   I W ++++  + H     A
Sbjct: 252 KCGGVDDALKVFNNLP-RRDLITWTSMITGLARHRQFKQA 290


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/539 (38%), Positives = 332/539 (61%), Gaps = 8/539 (1%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           P  L+   R  + +  ++ H   +K    +DL V+  LI F        S   A  +FD 
Sbjct: 115 PFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQF---YHNCGSFGCACDVFDE 171

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN-SGLLPDDYSFPSLLKACACVGAEAL 140
               D+V +N M   +       +A  L  E+     L PD+ +  SL+ ACA +G   L
Sbjct: 172 STVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGN--L 229

Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY 200
           E GK LH ++ +LGL+ NL V   ++++Y +C D+E+A+ +F  I E  V+S+ ++++  
Sbjct: 230 ERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGL 289

Query: 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
           A+S    EAL+LF+++Q   ++  ++T++  LS+CA  G+LD GK+IH  I K+ ++  +
Sbjct: 290 AKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDL 349

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            + TAL+DM+AKCG +D A+ VF  M  ++   W+A+I   A HG G  +I +F++M   
Sbjct: 350 VLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHD 409

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
           ++ PD++TF+ LL ACSH GLVDEG   F +M++K+ I P ++HYGC+VDLL RA ++D+
Sbjct: 410 KLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDD 469

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           A  FI+ +PIK+  +LW TLL +C S  +  LA+++  R+ EL+    G YV+LSNL A 
Sbjct: 470 ALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAG 529

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
             +W+    LRK MK++G+ K PGCS IE+N ++ +F +GD  H  +  +   ++E+ + 
Sbjct: 530 VSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRR 589

Query: 501 LKM-VGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           + +  G+VP T+ V   D+E+EEKE +L  HSEKLAI  GL++TP G+ IR+VKNLRVC
Sbjct: 590 VNLDGGHVPGTANVLF-DIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVC 647



 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 136/427 (31%), Positives = 237/427 (55%), Gaps = 7/427 (1%)

Query: 14  PPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSME 73
           P   CT   +   L   CTS    KQ HA+ ++THL ++    +KLI+F   + +   + 
Sbjct: 4   PSSKCTKLISVDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHS-GDLN 62

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
           +A  LF ++  PD  + NTM RGY+RS+ P  A+ L+  ++  G+  D+Y++P +L ACA
Sbjct: 63  YARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACA 122

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
            +GA  L  G++ HC  +K G  S+L+V   LI  Y  C     A  +F+  +   VV++
Sbjct: 123 RLGAVKL--GRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTW 180

Query: 194 NAIITAYARSSRPNEALSLFRELQE-RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           N +I A+       +A  L  E+ +  NL+P +VTM+S + +CA LG+L+ GK++H Y K
Sbjct: 181 NIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSK 240

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           + GLD+ ++VN A++DM+ KC  ++ A  VF+ +  KD  +W++M+   A  G   +++ 
Sbjct: 241 ELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALA 300

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           +F++M   ++  DEIT +G+L AC+ TG +D+G  Y + + DK+ I   +     +VD+ 
Sbjct: 301 LFQKMQLNKIELDEITLVGVLSACAQTGALDQG-KYIHLLIDKFEINCDLVLETALVDMY 359

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432
            + G +D A +    + +++    W  L+   + H +   A  + +++ E D     D  
Sbjct: 360 AKCGSIDLALQVFRRMRVRNV-FTWNALIGGLAMHGHGEDAISLFDQM-EHDKLMPDDVT 417

Query: 433 ILSNLCA 439
            ++ LCA
Sbjct: 418 FIALLCA 424



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 152/323 (47%), Gaps = 12/323 (3%)

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA--ECSDVEAARRIFENISEPCVVSYNAI 196
           ++ + KQ H   ++  L  N    + LI+  A     D+  AR++F  +  P     N +
Sbjct: 23  SISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTM 82

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           I  YARS  P EA+SL+  + ER +   + T    L++CA LG++ LG+  H  + K G 
Sbjct: 83  IRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGF 142

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
              + V  ALI  +  CG    A  VFD  + +D   W+ MI A+   G   K+  + +E
Sbjct: 143 GSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDE 202

Query: 317 MMKA-QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
           M K   + PDE+T + L+ AC+  G ++ G  + +S   + G+   ++    ++D+  + 
Sbjct: 203 MTKLDNLRPDEVTMVSLVPACAQLGNLERG-KFLHSYSKELGLDENLRVNNAILDMYCKC 261

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI----FELDDSHGGDY 431
             ++ A    + +  K   + W ++LS  +       A  + +++     ELD+      
Sbjct: 262 DDIESAQEVFNRIREKDV-LSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEI---TL 317

Query: 432 VILSNLCARAGRWEDVDYLRKLM 454
           V + + CA+ G  +   Y+  L+
Sbjct: 318 VGVLSACAQTGALDQGKYIHLLI 340


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/531 (38%), Positives = 331/531 (62%), Gaps = 16/531 (3%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           KQ H   +    ++DL V + LI+  ++      + +A +LFD IP  +IV + ++  GY
Sbjct: 102 KQAHQQALVFGFESDLFVSSALIDMYSK---CGKLSNARVLFDEIPRRNIVTWTSLITGY 158

Query: 98  SRSKTPIRAIFLFVELL---------NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHC 148
            ++     A+ +F E L           G   D  +  S+L AC+ V  +A+ EG  +H 
Sbjct: 159 VQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEG--VHG 216

Query: 149 FAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNE 208
            AIK+GL+  + V  TL++ YA+C +V  +R++F++++E  VVS+N++I  YA++    +
Sbjct: 217 VAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTD 276

Query: 209 ALSLFRE-LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267
           A  +F   L+    K  +VT+ + L +CA  G+L +G  +H+ + K G    V + T++I
Sbjct: 277 AFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSII 336

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
           DM+ KCG+ + A + FD M  K+ ++W+AMI  Y  HG   +++ +F +M+ A V P+ I
Sbjct: 337 DMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYI 396

Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
           TF+ +L ACSH G ++EGW +F +M  +Y + PG++HYGCMVDLLGRAG + EAY  I  
Sbjct: 397 TFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKS 456

Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447
           + ++   +LW +LL++C  H ++ LA+     +F+LD S+ G YV+L+N+ A AGRW+DV
Sbjct: 457 MKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWKDV 516

Query: 448 DYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYV 507
           + +R L+KDRG++K PG S +E+   V  F  GD  H     + K L+EL  +L+  GYV
Sbjct: 517 ERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQEAGYV 576

Query: 508 PDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           P+ + V H D+++EEKE+ +R HSEKLA+ FG++N+ PG+TI V+KNLRVC
Sbjct: 577 PNMASVLH-DVDEEEKEMIVRVHSEKLAVAFGVMNSIPGSTIHVIKNLRVC 626



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 179/355 (50%), Gaps = 20/355 (5%)

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
           FDR    D+  +N++    +R      ++  F  +    + P+  +FP  +K+C+ +   
Sbjct: 42  FDR---TDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFD- 97

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
            L  GKQ H  A+  G  S+L+V + LI++Y++C  +  AR +F+ I    +V++ ++IT
Sbjct: 98  -LNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLIT 156

Query: 199 AYARSSRPNEALSLFREL---------QERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
            Y ++   +EAL +F+E          +E       V M+S LS+C+ + +  + + +H 
Sbjct: 157 GYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHG 216

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
              K GLDK + V   L+D +AKCG +  +  VFD+M+ KD  +W++MI  YA +G    
Sbjct: 217 VAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTD 276

Query: 310 SILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
           +  +F  M+KA     +E+T   LL AC+H G +  G    +    K G V  +     +
Sbjct: 277 AFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVG-MCLHDQVIKMGYVNNVIMATSI 335

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
           +D+  + G+ + A    D +  K+    W  +++    H   G A++ ++  +++
Sbjct: 336 IDMYCKCGQAEMARNAFDGMKEKNVRS-WTAMIAGYGMH---GFAREALDVFYQM 386



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 144/303 (47%), Gaps = 41/303 (13%)

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
           N+NL   TTL N Y + +DV                S+N++I   AR     E+L  F  
Sbjct: 31  NTNL---TTLFNKYFDRTDV---------------YSWNSLIAELARGGDSCESLRAFSW 72

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
           +++ ++KP   T   A+ SC+ L  L+ GK  H+    +G +  + V++ALIDM++KCG+
Sbjct: 73  MRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGK 132

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM---------KAQVSPDE 326
           L +A  +FD +  ++   W+++I  Y  +   H+++++F+E +         +   S D 
Sbjct: 133 LSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDS 192

Query: 327 ITFLGLLYACSHTG--LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF 384
           +  + +L ACS      V EG    + +  K G+   +     ++D   + G +  + + 
Sbjct: 193 VAMISVLSACSRVSNKAVSEG---VHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKV 249

Query: 385 IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY--VILSNL---CA 439
            D++  K   + W ++++  + +   GL+    E    +  + GG Y  V LS L   CA
Sbjct: 250 FDDMAEKDV-VSWNSMIAVYAQN---GLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACA 305

Query: 440 RAG 442
             G
Sbjct: 306 HEG 308


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/487 (40%), Positives = 306/487 (62%), Gaps = 8/487 (1%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +E A +LFD++PE ++V + TM   YS ++   RA+ L   +   G++P+ ++F S+L+A
Sbjct: 336 LEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRA 395

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C     E L + KQLH + +K+GL S+++V + LI++Y++  ++  A ++F  +     V
Sbjct: 396 C-----ERLYDLKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSV 450

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
            +N+II A+A+ S  +EAL L++ ++         T+ S L +C  L  L+LG+  H ++
Sbjct: 451 VWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHV 510

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            K+  D+ + +N AL+DM+ KCG L+DA  +F+ M+ KD  +WS MI   A +G   +++
Sbjct: 511 LKF--DQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEAL 568

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +FE M      P+ IT LG+L+ACSH GLV+EGW YF SM + YGI PG +HYGCM+DL
Sbjct: 569 NLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDL 628

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
           LGRA +LD+  + I E+  +   + WRTLL +C +  N+ LA    + I +LD    G Y
Sbjct: 629 LGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAY 688

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           V+LSN+ A + RW DV  +R+ MK RG+ K PGCS IEVN  +  F  GD  H    ++ 
Sbjct: 689 VLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKSHPQIDEIN 748

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
           + L++ +  L   GYVPDT+ V   D+E E++E +LRYHSEKLAI FG+++ P   TIR+
Sbjct: 749 RQLNQFICRLAGAGYVPDTNFVLQ-DLEGEQREDSLRYHSEKLAIVFGIMSFPKEKTIRI 807

Query: 552 VKNLRVC 558
            KNL++C
Sbjct: 808 WKNLKIC 814



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 151/292 (51%), Gaps = 11/292 (3%)

Query: 117 GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVE 176
           G+  D  ++  L+K C   GA  + EGK++H      G +   ++   LIN+Y + + +E
Sbjct: 280 GVWADSITYSELIKCCLAHGA--VREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLE 337

Query: 177 AARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236
            A+ +F+ + E  VVS+  +I+AY+ +   + A+ L   +    + P   T  S L +C 
Sbjct: 338 EAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACE 397

Query: 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSA 296
            L  L   K +H +I K GL+  V V +ALID+++K G L +A+ VF  M   D+  W++
Sbjct: 398 RLYDL---KQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNS 454

Query: 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDK 355
           +I A+A H  G +++ +++ M +     D+ T   +L AC+   L++ G   + + ++  
Sbjct: 455 IIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLKFD 514

Query: 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
             ++        ++D+  + G L++A +FI     K   I W T+++  + +
Sbjct: 515 QDLILN----NALLDMYCKCGSLEDA-KFIFNRMAKKDVISWSTMIAGLAQN 561



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 94/201 (46%), Gaps = 5/201 (2%)

Query: 209 ALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALID 268
           A+ +   ++ R +    +T    +  C   G++  GK +H +I   G      +   LI+
Sbjct: 269 AMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILIN 328

Query: 269 MHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT 328
           M+ K   L++A  +FD M  ++  +W+ MI AY+      +++ +   M +  V P+  T
Sbjct: 329 MYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFT 388

Query: 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388
           F  +L AC     + +     +S   K G+   +     ++D+  + G L EA +   E+
Sbjct: 389 FSSVLRACERLYDLKQ----LHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREM 444

Query: 389 PIKSTPILWRTLLSSCSSHNN 409
            +    ++W +++++ + H++
Sbjct: 445 -MTGDSVVWNSIIAAFAQHSD 464



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 110/269 (40%), Gaps = 48/269 (17%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDR 81
           S+L  CTS   L   +Q H   +K     DL +   L++ +C       S+E A  +F+R
Sbjct: 489 SVLRACTSLSLLELGRQAHVHVLK--FDQDLILNNALLDMYCK----CGSLEDAKFIFNR 542

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           + + D++ ++TM  G +++   + A+ LF  +   G  P+  +   +L AC+  G     
Sbjct: 543 MAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGL---- 598

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
                        +N   Y   ++ NLY                 +P    Y  ++    
Sbjct: 599 -------------VNEGWYYFRSMNNLYG---------------IDPGREHYGCMLDLLG 630

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD-KYV 260
           R+ + ++ + L  E+   N +P  VT  + L +C    ++DL  +  + I K  LD +  
Sbjct: 631 RAEKLDDMVKLIHEM---NCEPDVVTWRTLLDACRARQNVDLATYAAKEILK--LDPQDT 685

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGK 289
                L +++A   R +D   V   M  +
Sbjct: 686 GAYVLLSNIYAISKRWNDVAEVRRTMKKR 714


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/555 (39%), Positives = 330/555 (59%), Gaps = 37/555 (6%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNP----------------------------TT 69
           +QIH   +K     D+ V T LI+   QN                             + 
Sbjct: 109 QQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSR 168

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN-SGLLPDDYSFPSL 128
             +E A  LFD IP  D+V +N M  GY  +     A+ LF E++  + + PD+ +  ++
Sbjct: 169 GYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTV 228

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP 188
           + ACA   ++++E G+ +H +    G  SNL +   LI+LY++  +VE A  +F+ +   
Sbjct: 229 VSACA--QSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNK 286

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
            V+S+N +I  Y   +   EAL LF+E+      P DVTMLS L +CA LG++D+G+WIH
Sbjct: 287 DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIH 346

Query: 249 EYIKKY--GLDKYVK-VNTALIDMHAKCGRLDDAVSVFDN-MSGKDTQAWSAMIVAYATH 304
            YI K   G+   V  + T+LIDM+AKCG +D A  VFD+ MS +    W+AMI  +A H
Sbjct: 347 VYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMH 406

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364
           G+ + +  +F  M    + PD+ITF+GLL ACSH+G++D G N F SM   Y I P ++H
Sbjct: 407 GRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEH 466

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
           YGCM+DLLG +G   EA   I+ +P++   ++W +LL +C  H NL L +   +++ +++
Sbjct: 467 YGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIE 526

Query: 425 DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV-LKVPGCSSIEVNNVVREFFSGDGV 483
             + G YV+LSN+ A AGRW +V  +R L+ D+G+  KVPGCSSIE+++VV EF  GD +
Sbjct: 527 PGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKL 586

Query: 484 HSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNT 543
           H  + ++   L+E+   L+  G+VPDTS V   +ME+E +E ALR+HSEKLAI FGL++T
Sbjct: 587 HPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQ-EMEEEWREGALRHHSEKLAIAFGLIST 645

Query: 544 PPGTTIRVVKNLRVC 558
            PGT + ++KNLRVC
Sbjct: 646 KPGTKLTIMKNLRVC 660



 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 137/444 (30%), Positives = 243/444 (54%), Gaps = 43/444 (9%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           ++ IHA  IKT L N    L+KL+ FC  +P      +A  +FD I EP+++++NTM RG
Sbjct: 4   VRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRG 63

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           ++ S  P+ A+ L++ +++ GLLPD Y+FP LLK+CA   ++  +EG+Q+H   +KLG +
Sbjct: 64  HALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCA--KSKIRKEGQQIHGHVLKLGFD 121

Query: 157 SNLYVCTTLINLYAECSDVEAARRI-------------------------------FENI 185
            ++YV T+LI++YA+   +E AR++                               F+ I
Sbjct: 122 LDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEI 181

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFRE-LQERNLKPTDVTMLSALSSCALLGSLDLG 244
               VVS+NA+I+ Y  +    EAL LF+E +   N++P + TM++ +S+CA   S++LG
Sbjct: 182 PGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELG 241

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
           + +H +I  +G    +K+  ALID+++K G ++ A  +FD +  KD  +W+ +I  Y   
Sbjct: 242 RHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHM 301

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIK 363
               +++L+F+EM+++  +P+++T L +L AC+H G +D G W + Y  +   G+V  + 
Sbjct: 302 NLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVS 361

Query: 364 HYGC-MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI-- 420
                ++D+  + G +D A +  D      +   W  ++S  + H     A  +  R+  
Sbjct: 362 SLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRM 421

Query: 421 --FELDDSHGGDYVILSNLCARAG 442
              E DD     +V L + C+ +G
Sbjct: 422 NGIEPDDI---TFVGLLSACSHSG 442


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/554 (38%), Positives = 328/554 (59%), Gaps = 11/554 (1%)

Query: 9   ITQSPPPKLCTNTPNALSLLPRCTSFRGLK----QIHAVTIKTHLQNDLNVLTKLINFCT 64
           + Q     +C N     S L  C    GLK    Q+H+  +K  +++DL V   L++  +
Sbjct: 347 LGQMKRSGICPNIFTLSSALKACAGM-GLKELGRQLHSSLMKMDMESDLFVSVGLVDMYS 405

Query: 65  QNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYS 124
           +      +E A + F+ +PE D++ +N +  GYS+    + A+ LFVE+   G+  +  +
Sbjct: 406 K---CDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTT 462

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
             ++LK+ A  G + +   +Q+H  ++K G +S++YV  +LI+ Y +CS VE A RIFE 
Sbjct: 463 LSTILKSTA--GLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEE 520

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
            +   +VS+ ++ITAYA+  +  EAL LF E+Q+  LKP      S L++CA L + + G
Sbjct: 521 CTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQG 580

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
           K +H +I KYG    +    +L++M+AKCG +DDA   F  ++ +   +WSAMI   A H
Sbjct: 581 KQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQH 640

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364
           G G +++ +F +M+K  VSP+ IT + +L AC+H GLV E   YF SM + +G  P  +H
Sbjct: 641 GHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEH 700

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
           Y CM+DLLGRAG+++EA   ++++P ++   +W  LL +   H ++ L ++  E +F L+
Sbjct: 701 YACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILE 760

Query: 425 DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVH 484
               G +V+L+N+ A AG+WE+V  +R+LM+D  V K PG S IEV + V  F  GD  H
Sbjct: 761 PEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSH 820

Query: 485 SYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTP 544
             S ++   LDEL   +   GYVP   +  H D+E  EKE+ L +HSEKLA+ FGL+ TP
Sbjct: 821 YRSQEIYAKLDELSDLMDKAGYVPMVEIDLH-DVEQSEKELLLYHHSEKLAVAFGLIATP 879

Query: 545 PGTTIRVVKNLRVC 558
            G  IRV KNLRVC
Sbjct: 880 QGAPIRVKKNLRVC 893



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 211/414 (50%), Gaps = 20/414 (4%)

Query: 7   PPITQSPPPKLCTN-------TPNALS---LLPRCTSFRGLK---QIHAVTIKTHLQNDL 53
           P  +Q P      N       TP ++S   LL +C + + L+   QIHA   K+ L +D 
Sbjct: 32  PQFSQDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDP 91

Query: 54  NVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVEL 113
           ++   LIN  ++     +  +A  L D   EPD+V ++ +  GY+++     A+  F E+
Sbjct: 92  SIRNHLINLYSK---CRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEM 148

Query: 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
              G+  ++++F S+LKAC+ V  + L  GKQ+H   +  G   +++V  TL+ +YA+C 
Sbjct: 149 HLLGVKCNEFTFSSVLKACSIV--KDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCD 206

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
           +   ++R+F+ I E  VVS+NA+ + Y +     EA+ LF E+    +KP + ++ S ++
Sbjct: 207 EFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVN 266

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
           +C  L     GK IH Y+ K G D       AL+DM+AK G L DA+SVF+ +   D  +
Sbjct: 267 ACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVS 326

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           W+A+I     H    +++ +  +M ++ + P+  T    L AC+  GL + G     S+ 
Sbjct: 327 WNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLM 386

Query: 354 DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
            K  +   +     +VD+  +   L++A    + LP K   I W  ++S  S +
Sbjct: 387 -KMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDL-IAWNAIISGYSQY 438



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 105/403 (26%), Positives = 200/403 (49%), Gaps = 13/403 (3%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  C+  + L   KQ+H V + +  + D+ V   L+              +  LFD I
Sbjct: 162 SVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLV---VMYAKCDEFLDSKRLFDEI 218

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           PE ++V +N +   Y +      A+ LF E++ SG+ P+++S  S++ AC   G      
Sbjct: 219 PERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNAC--TGLRDSSR 276

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           GK +H + IKLG + + +    L+++YA+  D+  A  +FE I +P +VS+NA+I     
Sbjct: 277 GKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVL 336

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
                +AL L  +++   + P   T+ SAL +CA +G  +LG+ +H  + K  ++  + V
Sbjct: 337 HEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFV 396

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
           +  L+DM++KC  L+DA   F+ +  KD  AW+A+I  Y+ + +  +++ +F EM K  +
Sbjct: 397 SVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGI 456

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
             ++ T   +L + +   +V       + +  K G    I     ++D  G+   +++A 
Sbjct: 457 GFNQTTLSTILKSTAGLQVV-HVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAE 515

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
           R  +E  I        +  S  +++   G  ++ ++   E+ D
Sbjct: 516 RIFEECTIGDLV----SFTSMITAYAQYGQGEEALKLFLEMQD 554



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 94/213 (44%), Gaps = 14/213 (6%)

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +I    + S+  +  ++   + + N  PT V+    LS C    SL  G  IH +I K G
Sbjct: 27  LIQTVPQFSQDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSG 86

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
           L     +   LI++++KC     A  + D  S  D  +WSA+I  YA +G G  +++ F 
Sbjct: 87  LSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFH 146

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG------CMV 369
           EM    V  +E TF  +L ACS    +  G       +  +G+V      G       +V
Sbjct: 147 EMHLLGVKCNEFTFSSVLKACSIVKDLRIG-------KQVHGVVVVSGFEGDVFVANTLV 199

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
            +  +     ++ R  DE+P ++  + W  L S
Sbjct: 200 VMYAKCDEFLDSKRLFDEIPERNV-VSWNALFS 231


>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
 gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/543 (39%), Positives = 329/543 (60%), Gaps = 7/543 (1%)

Query: 19  TNTPNA-LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHL 77
           T+  NA L++L  C +   LK+I A  I   LQN   +   ++NFC  +  + S+ +A  
Sbjct: 6   TSKANAILTVLQGCNNLTRLKKIQAHVIVNGLQNHPAISNSILNFCAVS-ISGSLPYAQH 64

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL-NSGLLPDDYSFPSLLKACACVG 136
           LF  I  P    +N++ RG+++S +P++AIF +  +L +S   PD ++F   LKAC  + 
Sbjct: 65  LFRHILNPQTQAWNSIIRGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERI- 123

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
            +AL++ +++H   I+ G   ++ VCT L+  Y     VE AR +F+N+ E  +V++NA+
Sbjct: 124 -KALKKCEEVHGSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAM 182

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           I+ Y+++    EAL ++  ++  N+     T++  LSSC+ +G+L++G  +H    + GL
Sbjct: 183 ISCYSQAGYHQEALRVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKGL 242

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
            + V V  ALIDM+AKCG LD A+ VF+ M  +D   W++MIV +  HG G ++I  F +
Sbjct: 243 LRNVFVGNALIDMYAKCGSLDGALEVFNGMP-RDAFTWNSMIVGFGVHGFGDEAIYFFNQ 301

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M++A V P+ I FLGLL  CSH GLV+EG  +F+ M  K+ + PGIKHYGC+VD+ GRAG
Sbjct: 302 MLEAGVRPNSIAFLGLLCGCSHQGLVEEGVEFFHQMSSKFNVKPGIKHYGCIVDMYGRAG 361

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSN 436
           +L++A   I + P +  P+LWR LLSS   H N+ + +  +  + +L   + GD V+L+ 
Sbjct: 362 KLEKALEIIGDSPWQDDPVLWRILLSSSKIHKNVVIGEIAMRNLSQLGAVNAGDCVLLAT 421

Query: 437 LCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDE 496
           + A A   + V  +RKL+K +G+   PG S IEV++ V  F   D  H  S  + + L+E
Sbjct: 422 IYAGANDEQGVARMRKLIKKQGIKTTPGWSWIEVSDQVHRFVVDDKSHPDSEMIYQKLEE 481

Query: 497 LVKELKMVGYVPDTS-LVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNL 555
           +  +  M GYV D S  + HG   +E  E +  YHSEKLAI FGL  TP GT++R+VKNL
Sbjct: 482 VTHKATMAGYVEDKSQFIFHGSCSEECLESSSTYHSEKLAIAFGLAKTPEGTSLRIVKNL 541

Query: 556 RVC 558
           RVC
Sbjct: 542 RVC 544


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/481 (40%), Positives = 311/481 (64%), Gaps = 3/481 (0%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           +F+ +P+ DIV +NT+  G +++     A+ +  E+ N+ L PD ++  S+L   A    
Sbjct: 152 VFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFA--EY 209

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
             L +GK++H +AI+ G ++++++ ++LI++YA+C+ V+ + R+F  + +   +S+N+II
Sbjct: 210 VNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSII 269

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
               ++   +E L  F+++    +KP  V+  S + +CA L +L LGK +H YI +   D
Sbjct: 270 AGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFD 329

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
             V + +AL+DM+AKCG +  A  +FD M   D  +W+AMI+ YA HG  + +I +F+ M
Sbjct: 330 GNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRM 389

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
               V P+ + F+ +L ACSH GLVDE W YF SM   Y I+PG++HY  + DLLGR GR
Sbjct: 390 EVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGR 449

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437
           L+EAY FI ++ I+ T  +W TLL++C  H N+ LA++V +++F +D  + G YV+LSN+
Sbjct: 450 LEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNI 509

Query: 438 CARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDEL 497
            + AGRW+D   LR  M+D+G+ K P CS IE+ N V  F +GD  H Y   + +AL  L
Sbjct: 510 YSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVL 569

Query: 498 VKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRV 557
           +++++  GYV DT+ V H D+E+E+K   L  HSE+LAITFG+++TP GTTIRV KNLRV
Sbjct: 570 LEQMEREGYVLDTTEVLH-DVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRV 628

Query: 558 C 558
           C
Sbjct: 629 C 629



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 127/243 (52%), Gaps = 4/243 (1%)

Query: 179 RRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL 238
           R++FE + +  +VS+N +I+  A++    +AL + RE+   +L+P   T+ S L   A  
Sbjct: 150 RKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEY 209

Query: 239 GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMI 298
            +L  GK IH Y  + G D  V + ++LIDM+AKC R+DD+  VF  +   D  +W+++I
Sbjct: 210 VNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSII 269

Query: 299 VAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYG 357
                +G   + +  F++M+ A++ P+ ++F  ++ AC+H   +  G   + Y +R ++ 
Sbjct: 270 AGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFD 329

Query: 358 IVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
               +     +VD+  + G +  A    D++ +    + W  ++   + H +   A  + 
Sbjct: 330 --GNVFIASALVDMYAKCGNIRTARWIFDKMELYDM-VSWTAMIMGYALHGHAYDAISLF 386

Query: 418 ERI 420
           +R+
Sbjct: 387 KRM 389



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 127/299 (42%), Gaps = 34/299 (11%)

Query: 113 LLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172
           +L SG  PD   FPS+LK+C  +  + L  G+ +H   I+LG+  +LY C  L+N+Y++ 
Sbjct: 1   MLASGKYPDHNVFPSVLKSCTLM--KDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKF 58

Query: 173 SDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232
             +E        +   C       I       + + +  L  EL ER         L+ +
Sbjct: 59  WSLEEG-----GVQRFCDSKMLGGIPEPREIGKCSNSHDLPCELDERVAGIDQNGDLNQM 113

Query: 233 SSCALLGSLDLGKWIHEYIKKYGLDKYVKV--NTALIDMHAKCGR----LDDAVSVFDNM 286
           S+                   Y ++ Y KV       D+++K  +    L     VF+ M
Sbjct: 114 SNIL-----------------YQVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMM 156

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL-YACSHTGLVDEG 345
             +D  +W+ +I   A +G    +++M  EM  A + PD  T   +L     +  L+   
Sbjct: 157 PKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGK 216

Query: 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSC 404
             + Y++R+ Y     I     ++D+  +  R+D++ R    LP +   I W ++++ C
Sbjct: 217 EIHGYAIRNGYDADVFIG--SSLIDMYAKCTRVDDSCRVFYMLP-QHDGISWNSIIAGC 272



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/273 (19%), Positives = 112/273 (41%), Gaps = 54/273 (19%)

Query: 16  KLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSM 72
           K+  N  +  S++P C     L   KQ+H   I++    ++ + + L++   +     ++
Sbjct: 292 KIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAK---CGNI 348

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
             A  +FD++   D+V +  M  GY+       AI LF  +   G+ P+  +F ++L AC
Sbjct: 349 RTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTAC 408

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE----- 187
           +  G                                      V+ A + F ++++     
Sbjct: 409 SHAGL-------------------------------------VDEAWKYFNSMTQDYRII 431

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
           P +  Y A+     R  R  EA     ++   +++PT     + L++C +  +++L + +
Sbjct: 432 PGLEHYAAVADLLGRVGRLEEAYEFISDM---HIEPTGSVWSTLLAACRVHKNIELAEKV 488

Query: 248 HEYIKKYGLD-KYVKVNTALIDMHAKCGRLDDA 279
            +  K + +D + +     L ++++  GR  DA
Sbjct: 489 SK--KLFTVDPQNIGAYVLLSNIYSAAGRWKDA 519


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/597 (37%), Positives = 335/597 (56%), Gaps = 49/597 (8%)

Query: 3   TTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLIN- 61
           T PS  I  +P P    N      LL +      L+QIHA  +   L ++ ++   LI+ 
Sbjct: 56  TFPSISIPTNPIPIDLPNPQTFSLLLNQRPKLSPLQQIHAQVVTQALSSNASLTASLIHC 115

Query: 62  -FCTQNPTTSSMEHAHLLFDRIPEPD--IVLFNTMARGYSRSKTPIRAIFLFVELLN--- 115
             C +N       +A +LFD  P P   I L+N M R YS+ +     I LF+ +L    
Sbjct: 116 YLCAKN-----HPNARILFDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDG 170

Query: 116 -SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174
              ++PD+Y+F  ++ +C+     +L  G+ +H   +K G  SNLYV  ++IN+ +  + 
Sbjct: 171 PMQVVPDEYTFTFVITSCS--HQISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVFAR 228

Query: 175 VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN-------------- 220
           +E AR++F  +SE  V S+ +++  YA+    + A  LF  +  RN              
Sbjct: 229 MEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGC 288

Query: 221 ------------------LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
                             + P +  ++  LS+CA LG+LD G WIH YI K G+ +   +
Sbjct: 289 GRYPEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNI 348

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
           +TALIDM+AKCGR+D A  VF+ +  +D  ++++MI   + HG G  ++ +F +M+   V
Sbjct: 349 STALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENV 408

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            P+EIT LG+L  CSH+GLV+EG +   +M   +GI P I+HYGC +DLLGRAG L+ A 
Sbjct: 409 MPNEITILGVLNGCSHSGLVEEGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERAL 468

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS-HGGDYVILSNLCARA 441
             +  +P++   ++WR LLS+   H+N+ L +Q+I  I +L  S H G  V+LSNL A  
Sbjct: 469 EVVKTMPMEPDIVIWRALLSASRIHHNVNLGEQIISHIGQLKSSDHNGGEVLLSNLYASL 528

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           GRWE V  +RKLM DR     PGCS IEVN +V EF   D +H    +++  L+E++K L
Sbjct: 529 GRWERVTEMRKLMVDRRSESSPGCSWIEVNGLVHEFRVADQLHPQIVEIRNKLNEILKRL 588

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             +GY  +T  V   D+ +EEKE A+ +HSEKLAI FGL++T PGT IR+VKNLR C
Sbjct: 589 SQIGYSANTMQVSF-DLNEEEKEQAVAWHSEKLAIAFGLMSTEPGTLIRIVKNLRTC 644


>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/542 (37%), Positives = 327/542 (60%), Gaps = 6/542 (1%)

Query: 19  TNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLL 78
           +N    L+LL  C S + L++IHA  I + L + + +  KL+NFC  +  + S+ +A LL
Sbjct: 2   SNEKAILALLQGCNSLKRLRKIHAHVIVSGLHHHVPIANKLLNFCAIS-VSGSLAYAQLL 60

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL-NSGLLPDDYSFPSLLKACACVGA 137
           F ++  P    +N++ RG+++S +PI AI  + +++ +S  +PD ++F  +LKAC  + A
Sbjct: 61  FHQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKA 120

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
           E   + K++H   I+ G ++++ VCT L+  Y+    V  AR++F+ +    +V++NA+I
Sbjct: 121 E--RKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGLVCIARQVFDKMPARDLVAWNAMI 178

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
           + +++     EAL  + +++  N+     T++  +SSCA LG+L++G  +H + ++ GLD
Sbjct: 179 SCFSQQGLHQEALQTYNQMRSENVDVDGFTLVGLISSCAHLGALNIGVQMHRFARENGLD 238

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
           + + V  ALIDM+AKCG LD A+ +FD M  KD   W++MIV Y  HG+G ++I  F++M
Sbjct: 239 QSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQM 298

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
           ++A++ P+ +TFLGLL  CSH GLV EG  YF  M  K+ + P +KHYGC+VDL GRAG+
Sbjct: 299 LEARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGK 358

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437
           LD+A   +      +  +LWR LL SC  H N+ + +  + R+ EL  +  GD ++L+ +
Sbjct: 359 LDKALEIVSNSS-HNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELGATSAGDCILLATI 417

Query: 438 CARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDEL 497
            A       V  +RK++K +G    PG S IE+   V +F   D  H YS ++ + L E+
Sbjct: 418 YAGEKDKAGVARMRKMIKSQGKKTTPGWSWIEIGEQVHKFVVDDKSHRYSVEVYEKLREV 477

Query: 498 VKELKMVGYVPDTSLVHHGDMEDEEK-EIALRYHSEKLAITFGLLNTPPGTTIRVVKNLR 556
           + +    GYV D S+     +   E  + +  YHSEKLAI FGL  T  GT IR+VKNLR
Sbjct: 478 IHQASFFGYVGDESISSLDMLSTMETLKTSCTYHSEKLAIAFGLARTADGTQIRIVKNLR 537

Query: 557 VC 558
           VC
Sbjct: 538 VC 539


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/567 (35%), Positives = 338/567 (59%), Gaps = 41/567 (7%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           LS L  CT+   LK IHA  I+ H   D+   + LI+        + +++A  +F +I  
Sbjct: 19  LSFLESCTTLSHLKIIHAHLIRAHTIFDVFAASCLISISINK---NLLDYAAQVFYQIQN 75

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
           P++ ++N+  RG+S SK P ++   +V+   +GL+PD+ ++P L+KAC   G+  L+ G 
Sbjct: 76  PNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGS--LDMGI 133

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYA-------------------------------ECS 173
           Q H   I+ G +S++YV  +L+ +Y+                               +  
Sbjct: 134 QAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSG 193

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
           DV +AR++F+ + E  +V+++ +I+ YA++S  ++A+ L+  LQ   +   +  M+S ++
Sbjct: 194 DVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIA 253

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
           SCA LG+L+LG+  H+YI +  +   + + TAL+DM+A+CG +D A+ VFD + G+D  +
Sbjct: 254 SCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALS 313

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           W+ +I  +A HG   K++  F  M KA ++P EITF  +L ACSH GLV+ G   F SM+
Sbjct: 314 WTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMK 373

Query: 354 DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413
             Y I P ++HYGCMVDLLGRAG+L EA +F++E+P+K    +W  LL +C  H N  +A
Sbjct: 374 RDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIA 433

Query: 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNV 473
           ++  + + EL   H G YV+LSN+ AR  +WE+V+ +R++MK+RGV+K PG +  E++  
Sbjct: 434 ERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGK 493

Query: 474 VREFFSGDGVHSYSTDLQKALDELVKELKMVGYVP--DTSLVHHGDMEDEEKEIALRYHS 531
           V +F  GD  H     +++  +E++ ++++ GY    D +L    D+++EEKE  +  HS
Sbjct: 494 VHKFTIGDKTHPEIQQIERMWEEILGKIRLAGYTGNNDDALF---DIDEEEKESNIHRHS 550

Query: 532 EKLAITFGLLNTPPGTTIRVVKNLRVC 558
           EKLAI + ++ T     IR+VKNLRVC
Sbjct: 551 EKLAIAYAIMRTKGHDPIRIVKNLRVC 577


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/485 (41%), Positives = 301/485 (62%), Gaps = 3/485 (0%)

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
           +AH +F     P++ ++NT+ RGYS S +PI AI L+ ++   G+ P+ Y+F  +L AC 
Sbjct: 19  YAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVLNACC 78

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
            +    L EG++LH   +K GL+    +   LI LYA C  ++ A  +F+ + EP   S+
Sbjct: 79  KL--LRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSASW 136

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           + +++ Y+++ +  E L L RE+Q  N+     T+ S +  C  LG LDLGKW+H YI K
Sbjct: 137 STMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDK 196

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
            G+   V + TAL+ M++KCG LD+A+ VF  M+ +D   WS MI  YA HG   K++ +
Sbjct: 197 EGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQL 256

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           F+ M ++++ P+ +TF  +L A SH+GLV++G   F +M  +Y I P IKHYGCMVDL  
Sbjct: 257 FDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFC 316

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI 433
           RAG +  A++FI  +PI+   +LWRTLL +C +H   GL + +  +I +LD S   +YV 
Sbjct: 317 RAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKGLGEHISRKILKLDPSSPENYVF 376

Query: 434 LSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKA 493
           +SN+ A  GRW  V  +R LMK++   K  G SSIE+N +V +F  G+  H     +   
Sbjct: 377 VSNVYASLGRWSSVCQVRSLMKEKAPKKQHGWSSIEINFMVHKFIMGEESHPKREKIYGM 436

Query: 494 LDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVK 553
           L ++ ++LK VG+V  T  V H D+++EEKE AL  HSE+LAI +GLL+TP G+ IR+VK
Sbjct: 437 LHQMARKLKQVGHVASTVDVLH-DIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRIVK 495

Query: 554 NLRVC 558
           NLR C
Sbjct: 496 NLRAC 500



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 161/331 (48%), Gaps = 20/331 (6%)

Query: 17  LCTNTPNALS---LLPRCTSFRGL---KQIHAVTIKTHLQND---LNVLTKLINFCTQNP 67
           LC  +PN+ +   +L  C     L   +++H+  +K  L  +   LN L KL   C    
Sbjct: 60  LCGISPNSYTFGFVLNACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAAC---- 115

Query: 68  TTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPS 127
               M++A ++FD +PEPD   ++TM  GYS++   +  + L  E+    +  D ++  S
Sbjct: 116 --GCMDYACVMFDEMPEPDSASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLAS 173

Query: 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE 187
           ++  C  +G   L+ GK +H +  K G+  ++ + T L+ +Y++C  ++ A ++F+ ++E
Sbjct: 174 VVGVCGDLG--VLDLGKWVHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAE 231

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
             V +++ +I  YA      +AL LF  ++   + P  VT  S LS+ +  G ++ G  I
Sbjct: 232 RDVTTWSIMIAGYAIHGHDEKALQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQI 291

Query: 248 HEYI-KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHG 305
            E +  +Y +   +K    ++D+  + G +  A      M  + +   W  ++ A  THG
Sbjct: 292 FETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHG 351

Query: 306 QGHKSILMFEEMMKAQ-VSPDEITFLGLLYA 335
                  +  +++K    SP+   F+  +YA
Sbjct: 352 YKGLGEHISRKILKLDPSSPENYVFVSNVYA 382



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 2/244 (0%)

Query: 175 VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSS 234
           V  A  IF     P +  +N II  Y+ S  P  A++L++++    + P   T    L++
Sbjct: 17  VAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVLNA 76

Query: 235 CALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAW 294
           C  L  L  G+ +H  I K GLD    +   LI ++A CG +D A  +FD M   D+ +W
Sbjct: 77  CCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSASW 136

Query: 295 SAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD 354
           S M+  Y+ +GQ  +++ +  EM    VS D  T   ++  C   G++D G  + +S  D
Sbjct: 137 STMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLG-KWVHSYID 195

Query: 355 KYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAK 414
           K G+   +     +V +  + G LD A +    +  +     W  +++  + H +   A 
Sbjct: 196 KEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTT-WSIMIAGYAIHGHDEKAL 254

Query: 415 QVIE 418
           Q+ +
Sbjct: 255 QLFD 258


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/591 (36%), Positives = 346/591 (58%), Gaps = 42/591 (7%)

Query: 3   TTPSP---PITQSPPPKLCT-NTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTK 58
           + PSP   P + S P  L + +    +SLL R      +  IHA  I+     D  ++ +
Sbjct: 27  SGPSPKPHPNSNSNPKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFE 86

Query: 59  LINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118
           L+  C++     ++++A  +F     P++ L+  +  G+  S   + AI L+  +L+  +
Sbjct: 87  LLRSCSK---CHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESI 143

Query: 119 LPDDYSFPSLLKACACVGAE-ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEA 177
           LPD+Y   S+LKAC   G++ AL EG+++H  A+KLG +SN  V   ++ LY +C ++  
Sbjct: 144 LPDNYLMASILKAC---GSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGD 200

Query: 178 ARRIFENISEPCVVS------------------------------YNAIITAYARSSRPN 207
           ARR+FE + E  V S                              + A+I  + R+   N
Sbjct: 201 ARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETN 260

Query: 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267
            AL  FR +Q  N++P + T++  LS+C+ LG+L++G+W+H Y++K+ ++  + V  ALI
Sbjct: 261 RALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALI 320

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
           +M+++CG +D+A +VFD M  +D   ++ MI   + +G+  ++I +F  M+  ++ P  +
Sbjct: 321 NMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNV 380

Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
           TF+G+L ACSH GLVD G+  F+SM   Y + P I+HYGCMVDLLGR GRL+EAY  I  
Sbjct: 381 TFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRT 440

Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447
           + +    I+  TLLS+C  H NL L +QV + + +   +  G YV+LS++ A +G+W++ 
Sbjct: 441 MKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEA 500

Query: 448 DYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYV 507
             +R  MK+ G+ K PGCSSIEVNN + EF  GD  H     + + L+EL + L++ GY 
Sbjct: 501 AQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYH 560

Query: 508 PDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           P+  +V   D+ED EKE AL  HSE+LAI +GL++T P T IRV+KNLRVC
Sbjct: 561 PEKEVVLQ-DIEDGEKEWALAMHSERLAICYGLISTEPCTMIRVMKNLRVC 610


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/521 (39%), Positives = 318/521 (61%), Gaps = 7/521 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K++H    +   ++D+ V   L+    +      +E A ++F+ + + +IV + +M  GY
Sbjct: 189 KRVHGQIFRLGFESDVFVQNGLVALYAK---CGRVEQARIVFEGLDDRNIVSWTSMISGY 245

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            ++  P+ A+ +F ++    + PD  +  S+L+A   V  E LE+GK +H   +K+GL  
Sbjct: 246 GQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDV--EDLEQGKSIHGCVVKMGLEF 303

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
              +  +L  +YA+C  V  AR  F+ +  P V+ +NA+I+ YA++   NEA+ LF+E+ 
Sbjct: 304 EPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMI 363

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
            +N++   +T+ SA+ +CA +GSLDL KW+ +YI K      V VNTALIDM AKCG +D
Sbjct: 364 SKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVD 423

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            A  VFD    KD   WSAMIV Y  HG+G  +I +F  M +A V P+++TF+GLL AC+
Sbjct: 424 LAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACN 483

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H+GLV+EGW  F+SM+  YGI    +HY C+VDLLGR+G L+EAY FI  +PI+    +W
Sbjct: 484 HSGLVEEGWELFHSMK-YYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVW 542

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             LL +C  + ++ L +   E++F LD  + G YV LSNL A +  W+ V  +R LM+++
Sbjct: 543 GALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREK 602

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           G+ K  G S IE+N  ++ F  GD  H    ++ + L+ L + LK  G++P    V H D
Sbjct: 603 GLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESLERRLKEAGFIPHIESVLH-D 661

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +  EEKE  L  HSE+LAI +GL++T PGTT+R+ KNLR C
Sbjct: 662 LNQEEKEETLCNHSERLAIAYGLISTAPGTTLRITKNLRAC 702



 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 130/439 (29%), Positives = 223/439 (50%), Gaps = 16/439 (3%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP 85
           SLL      R L QIHA  + + L     ++TK +N    +     + +A  +FD  PEP
Sbjct: 76  SLLDHSVHKRHLNQIHAQLVVSGLVESGFLVTKFVN---ASWNIGEIGYARKVFDEFPEP 132

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
            + L+N + RGYS       AI ++  +  SG+ PD ++ P +LKAC+  G   LE GK+
Sbjct: 133 SVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACS--GVPVLEVGKR 190

Query: 146 LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSR 205
           +H    +LG  S+++V   L+ LYA+C  VE AR +FE + +  +VS+ ++I+ Y ++  
Sbjct: 191 VHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGL 250

Query: 206 PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTA 265
           P EAL +F ++++RN+KP  + ++S L +   +  L+ GK IH  + K GL+    +  +
Sbjct: 251 PMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLIS 310

Query: 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
           L  M+AKCG++  A S FD M   +   W+AMI  YA +G  ++++ +F+EM+   +  D
Sbjct: 311 LTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTD 370

Query: 326 EITFLGLLYACSHTGLVD-EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF 384
            IT    + AC+  G +D   W   Y  + +Y     +     ++D+  + G +D A   
Sbjct: 371 SITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVN--TALIDMFAKCGSVDLAREV 428

Query: 385 IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS----HGGDYVILSNLCAR 440
            D    K   ++W  ++     H   G  +  I+  + +  +    +   +V L   C  
Sbjct: 429 FDRTLDKDV-VVWSAMIVGYGLH---GRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNH 484

Query: 441 AGRWEDVDYLRKLMKDRGV 459
           +G  E+   L   MK  G+
Sbjct: 485 SGLVEEGWELFHSMKYYGI 503


>gi|357477567|ref|XP_003609069.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510124|gb|AES91266.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 611

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/575 (38%), Positives = 330/575 (57%), Gaps = 57/575 (9%)

Query: 25  LSLLPRC-TSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           LSLL  C T+ +  KQIH     T L        KL+  C  + +   + ++  LF   P
Sbjct: 13  LSLLSNCNTTLKTTKQIHTHLYVTGLHTHPFFFGKLLLNCAVSISDHVLNYSLRLFHHFP 72

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELL-NSGLLPDDYSFPSLLKACACVGAEALEE 142
            PD  ++NT+ R  S S TP+ ++  F++LL +  LLPD +SF   LK  A  G     +
Sbjct: 73  NPDTFMYNTLIRSLSHSSTPLSSLQPFIQLLRHPTLLPDSFSFAFTLKGIANDGCSK-RQ 131

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA--- 199
           G QLH  A + G + +++V TTLI++YAEC   E AR++F+ +S+P VV++NA++TA   
Sbjct: 132 GIQLHSHAFRHGFDDHIFVGTTLISMYAECGCYEYARKVFDEMSQPNVVAWNAVVTACFR 191

Query: 200 -----------------------------------YARSSRPNEALSLFRELQERNLKPT 224
                                              +A+S   ++A   F+EL     +P+
Sbjct: 192 CGMWRVLGVSFGWREVVFCEMKMRDDASWSTMIVGFAKSGSFHDAFGFFKELLRDRNRPS 251

Query: 225 DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFD 284
           +V++   LS+CA  G+ + GK +H +++K G    V VN ALID ++KCG +D A  VF+
Sbjct: 252 EVSLTGVLSACAQAGAFEFGKILHGFMEKAGFLCIVSVNNALIDTYSKCGNVDMAKLVFN 311

Query: 285 NMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDE 344
                         ++ A HG+  ++I +F EM ++ V PD +TF+ LLYACSH+GLV++
Sbjct: 312 --------------ISLAMHGRADEAIRVFHEMEESGVRPDGVTFISLLYACSHSGLVEQ 357

Query: 345 GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSC 404
           G   F  MR+ YGI P I+HYGCMVDL GRA RL +AY FI ++PI    I+WRTLL +C
Sbjct: 358 GCALFSKMRNFYGIEPAIEHYGCMVDLYGRAARLQKAYEFIRQMPILPNVIIWRTLLGAC 417

Query: 405 SSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPG 464
           S H N+ LA+ V  R+ E+D ++ GD+V+LSN+ A AG+W+DV  +R+ M ++ + K+PG
Sbjct: 418 SIHGNIELAELVKARLAEMDPNNSGDHVLLSNVYAVAGKWKDVAGIRRTMIEQSMKKIPG 477

Query: 465 CSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK-MVGYVPDTSLVHHGDMEDEEK 523
            S IE++ V   F +G+  +  + +    L E++  L+   GY P    V H D+E+EEK
Sbjct: 478 WSMIEIDKVNYGFVAGEKPNEVTKEAHDKLREIMLRLREEEGYAPQVRSVLH-DVEEEEK 536

Query: 524 EIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           E ++  HSEKLA  FG+   P G  +R+VKNLRVC
Sbjct: 537 EDSMSKHSEKLAAAFGIAKLPKGRILRIVKNLRVC 571


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 223/599 (37%), Positives = 329/599 (54%), Gaps = 69/599 (11%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           +SLL +C+S +  KQIHA   KT L  D  V  KL+  C     + ++ +A  LF   P 
Sbjct: 6   VSLLSKCSSLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAIT-ISDALHYALRLFHHFPN 64

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLL-PDDYSFPSLLKACACVGAEALEEG 143
           PD  + NT+ R  S S+TP+ ++  F++L     L PD ++F   LKA A   +  L  G
Sbjct: 65  PDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVA--NSRHLRPG 122

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAE-------------------------------C 172
            QLH  A + G +++++V TTLI++YAE                               C
Sbjct: 123 IQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRC 182

Query: 173 SDVEAA-------------------------------RRIFENISEPCVVSYNAIITAYA 201
            DVE A                               RR+F  +     VS++ +I  +A
Sbjct: 183 GDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFA 242

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
            +   +EA   FREL    ++  +V++   LS+CA  G+ + GK +H +++K G      
Sbjct: 243 HNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGS 302

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
           VN ALID ++KCG +  A  VF NM   +   +W+++I   A HG G ++I +F EM ++
Sbjct: 303 VNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEES 362

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
            V PD ITF+ LLYACSH+GLV+EG   F  M++ YGI P I+HYGCMVDL GRA RL +
Sbjct: 363 GVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQK 422

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           AY FI E+P+    I+WRTLL +CS H N+ +A+ V  R+ E+D  + GD+V+LSN+ A 
Sbjct: 423 AYEFICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAV 482

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
           AG+W+DV  +R+ M +  + K PG S IE++ V+  F +G+  +  + +  + L E++  
Sbjct: 483 AGKWKDVSSIRRTMTEHSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTEEAHEKLREIMLR 542

Query: 501 LKM-VGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           L+   GY P    V H D+E+EEKE ++  HSEKLA  FG+   P G  +R+VKNLRVC
Sbjct: 543 LRTEAGYAPQLRSVLH-DIEEEEKEDSVSKHSEKLAAAFGIAKLPKGRILRIVKNLRVC 600


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/591 (37%), Positives = 336/591 (56%), Gaps = 58/591 (9%)

Query: 21  TPNALSL---LPRCTSF----RGLKQIHAVTIKTHLQNDLNVLTKLINF----------- 62
           +P+ +SL   LP C S     RG +Q+H  +I++ L +D+ V   +++            
Sbjct: 361 SPDVISLVNILPACASLAASLRG-RQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEAN 419

Query: 63  -----------------CTQNPTTSSMEHAHLLFDRIPEP----DIVLFNTMARGYSRSK 101
                             T       +EHA  LF+R+ E     D+V +  +  GY++  
Sbjct: 420 KVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRG 479

Query: 102 TPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN----- 156
               A+ +F ++ + G  P+  +  SLL AC  VGA  L  GK+ HC+AIK  LN     
Sbjct: 480 QGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGA--LLHGKETHCYAIKFILNLDGPD 537

Query: 157 ---SNLYVCTTLINLYAECSDVEAARRIFENIS--EPCVVSYNAIITAYARSSRPNEALS 211
               +L V   LI++YA+C   E AR++F+++S  +  VV++  +I  YA+    N AL 
Sbjct: 538 PGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQ 597

Query: 212 LFREL--QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK--YGLDKYVKVNTALI 267
           LF  +   ++++KP D T+  AL +CA L +L  G+ +H Y+ +  YG    + V   LI
Sbjct: 598 LFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYG-SVMLFVANCLI 656

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
           DM++K G +D A  VFDNM  ++  +W++++  Y  HG+G  ++ +F+EM K  + PD I
Sbjct: 657 DMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGI 716

Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
           TFL +LYACSH+G+VD G N+F  M   +G+ PG +HY CMVDL GRAGRL EA + I+E
Sbjct: 717 TFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINE 776

Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447
           +P++ TP++W  LLS+C  H+N+ L +    R+ EL+  + G Y +LSN+ A A RW+DV
Sbjct: 777 MPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDV 836

Query: 448 DYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYV 507
             +R  MK  G+ K PGCS I+    V  F+ GD  H  S  + + L +L++ +K +GYV
Sbjct: 837 ARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYV 896

Query: 508 PDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           P TS   H D++DEEK   L  HSEKLA+ +G+L   P   IR+ KNLR+C
Sbjct: 897 PQTSFALH-DVDDEEKGDLLFEHSEKLALAYGILTLHPRAPIRITKNLRIC 946



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/458 (25%), Positives = 216/458 (47%), Gaps = 58/458 (12%)

Query: 18  CTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHL 77
           C   P  ++ L  C S    K +H  +I   L    ++ T LI     + +T+   +A L
Sbjct: 160 CATIP--ITALKECNSLAHAKLLHQQSIMQGLL--FHLATNLIGTYIASNSTA---YAIL 212

Query: 78  LFDRIPEP--DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
           L +R+P     +  +N + R      +P     L+ ++ + G  PD Y+FP + KACA  
Sbjct: 213 LLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACA-- 270

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV---VS 192
              +L  G  LH    + G  SN++VC  ++++Y +C  +  A  +F+++    +   VS
Sbjct: 271 NLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVS 330

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDV-TMLSALSSCALLGSLDLGKWIHEYI 251
           +N++++AY  +S  N AL+LF ++  R+L   DV ++++ L +CA L +   G+ +H + 
Sbjct: 331 WNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFS 390

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM-------------- 297
            + GL   V V  A++DM+AKCG++++A  VF  M  KD  +W+AM              
Sbjct: 391 IRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHAL 450

Query: 298 ---------------------IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
                                I  YA  GQG +++ +F +M      P+ +T + LL AC
Sbjct: 451 SLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSAC 510

Query: 337 SHTGLVDEG-WNYFYSMR---DKYGIVPG---IKHYGCMVDLLGRAGRLDEAYRFIDELP 389
              G +  G   + Y+++   +  G  PG   +K    ++D+  +    + A +  D + 
Sbjct: 511 VSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVS 570

Query: 390 IKSTPIL-WRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
            K   ++ W  ++   + H +   A Q+   +F++D S
Sbjct: 571 PKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKS 608



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 161/353 (45%), Gaps = 20/353 (5%)

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           P   IV  + + + + R +  I ++ L    + S LL   ++   LL +CA +   AL+E
Sbjct: 113 PAIRIVFVSVLQQLHHRYRCSI-SMLLRCFPIKSKLLQSQFTNTRLL-SCATIPITALKE 170

Query: 143 ------GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI--SEPCVVSYN 194
                  K LH  +I  GL    ++ T LI  Y   +    A  + E +  S   V  +N
Sbjct: 171 CNSLAHAKLLHQQSIMQGLL--FHLATNLIGTYIASNSTAYAILLLERLPPSPSSVFWWN 228

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
            +I        P +  +L+R+++     P   T      +CA L SL LG  +H  + + 
Sbjct: 229 QLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRS 288

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ---AWSAMIVAYATHGQGHKSI 311
           G    V V  A++ M+ KCG L  A ++FD++  +  Q   +W++++ AY      + ++
Sbjct: 289 GFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTAL 348

Query: 312 LMFEEMMKAQV-SPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMV 369
            +F +M    + SPD I+ + +L AC+       G   + +S+R   G+V  +     +V
Sbjct: 349 ALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRS--GLVDDVFVGNAVV 406

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
           D+  + G+++EA +    +  K   + W  +++  S    L  A  + ER+ E
Sbjct: 407 DMYAKCGKMEEANKVFQRMKFKDV-VSWNAMVTGYSQAGRLEHALSLFERMTE 458


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/534 (38%), Positives = 308/534 (57%), Gaps = 49/534 (9%)

Query: 27  LLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTS--SMEHAHLLFDRIPE 84
           L+ +  +   L QIHAV  +  L +       ++NF  Q    S   ++++  LF R   
Sbjct: 36  LIDKSKTISHLLQIHAVLFRHGLDHH-----PILNFKLQRSYASLGRLDYSVALFGRTQN 90

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
           P +  +  +  G++     + A  LF        +P+                       
Sbjct: 91  PSVFFWTAIIHGHALRGDVVSAQQLF------DTMPE----------------------- 121

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
                        +L   T ++  YA+  +++AAR +F+ + E   V +N +I  Y ++ 
Sbjct: 122 ------------KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNG 169

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
            PNEAL LFR + +   KP +VT+LS LS+C  LG+L+ G+W+H YI+  G+   V V T
Sbjct: 170 MPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGT 229

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
           AL+DM++KCG L+DA  VFD +  KD  AW++MIV YA HG   +++ +F+ M +  + P
Sbjct: 230 ALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHP 289

Query: 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF 384
             ITF+G+L AC H+G V EGW+ F  M+D+YGI P I+HYGCMV+LLGRAG +++AY  
Sbjct: 290 TNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYEL 349

Query: 385 IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444
           +  + I+  P+LW TLL +C  H  + L ++++E + + + ++ G Y++LSN+ A  G W
Sbjct: 350 VKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNW 409

Query: 445 EDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMV 504
           + V  LR +MKD GV K PGCSSIEVNN V EF +G   H    ++   L+E+   LK  
Sbjct: 410 DGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSH 469

Query: 505 GYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           GY P T +V H D+ + EKE +L  HSEKLAI FGL+NT PGTTI++VKNLRVC
Sbjct: 470 GYTPQTDIVLH-DIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVC 522



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 100/235 (42%), Gaps = 41/235 (17%)

Query: 20  NTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N    LS+L  C     L   + +H+      +Q +++V T L++  ++     S+E A 
Sbjct: 189 NEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSK---CGSLEDAR 245

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
           L+FD+I + D+V +N+M  GY+       A+ LF  +   GL P + +F  +L AC   G
Sbjct: 246 LVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSG 305

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
              + EG                       +++ +  D        E   EP +  Y  +
Sbjct: 306 --WVTEG----------------------WDIFNKMKD--------EYGIEPKIEHYGCM 333

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           +    R+    +A  L + +   N++P  V   + L +C L G + LG+ I E +
Sbjct: 334 VNLLGRAGHVEQAYELVKNM---NIEPDPVLWGTLLGACRLHGKIALGEKIVELL 385


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/484 (39%), Positives = 302/484 (62%), Gaps = 8/484 (1%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           AH LFD++P+ +++ + TM   YS+ K   +A+ L V +L  G+ P+ Y++ S+L+AC  
Sbjct: 67  AHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRAC-- 124

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
                + + + LHC  IK GL S++YV + LI+++A+  + E A  +F+ +     + +N
Sbjct: 125 ---NGMSDVRMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWN 181

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           +II  +A++SR + AL LF+ ++         T+ S L +C  L  L+LG   H +I KY
Sbjct: 182 SIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKY 241

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
             D+ + +N AL+DM+ KCG L+DA  VF+ M  +D   WS MI   A +G   +++ +F
Sbjct: 242 --DQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLF 299

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
           E M  +   P+ IT +G+L+ACSH GL+++GW YF SM+  YGI PG +HYGCM+DLLG+
Sbjct: 300 ELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGK 359

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
           AG+LD+A + ++E+  +   + WRTLL +C    N+ LA+   +++  LD    G Y +L
Sbjct: 360 AGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVL 419

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
           SN+ A + +W+ V+ +RK M+D G+ K PGCS IEVN  +  F  GD  H    ++ K L
Sbjct: 420 SNIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNKKL 479

Query: 495 DELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
           ++L+  L  +GYVP+T+ V   D+E E+ E +LR+HSEKLA+ FGL+  P    IR+ KN
Sbjct: 480 NQLIHRLIGIGYVPETNFVLQ-DLEGEQMEDSLRHHSEKLALAFGLMTLPSEKVIRIRKN 538

Query: 555 LRVC 558
           LR+C
Sbjct: 539 LRIC 542



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 175/351 (49%), Gaps = 24/351 (6%)

Query: 113 LLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172
           L + GL  D  ++  L+K C  +   A+ EG  +       G    +++   LIN+Y + 
Sbjct: 4   LQSHGLWADSATYSELIKCC--LSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKF 61

Query: 173 SDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232
           + +  A ++F+ + +  V+S+  +I+AY++     +AL L   +    ++P   T  S L
Sbjct: 62  NLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVL 121

Query: 233 SSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ 292
            +C  +  +   + +H  I K GL+  V V +ALID+ AK G  +DA+SVFD M   D  
Sbjct: 122 RACNGMSDV---RMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAI 178

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
            W+++I  +A + +   ++ +F+ M +A    ++ T   +L AC+   L++ G      M
Sbjct: 179 VWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG------M 232

Query: 353 RDKYGIVPGIKHY---GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
           +    IV   +       +VD+  + G L++A R  +++  +   I W T++S  + +  
Sbjct: 233 QAHVHIVKYDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDV-ITWSTMISGLAQN-- 289

Query: 410 LGLAKQVIERIFELDDSHGG--DYVILSNL---CARAGRWEDVDYLRKLMK 455
            G +++ + ++FEL  S G   +Y+ +  +   C+ AG  ED  Y  + MK
Sbjct: 290 -GYSQEAL-KLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMK 338



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 99/215 (46%), Gaps = 16/215 (7%)

Query: 26  SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDR 81
           S+L  CT    L+   Q H   +K     DL +   L++ +C       S+E A  +F++
Sbjct: 217 SVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCK----CGSLEDARRVFNQ 270

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           + E D++ ++TM  G +++     A+ LF  + +SG  P+  +   +L AC+  G   LE
Sbjct: 271 MKERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAG--LLE 328

Query: 142 EGKQLHCFAIKL-GLNSNLYVCTTLINLYAECSDVEAARRIFENIS-EPCVVSYNAIITA 199
           +G        KL G+N        +I+L  +   ++ A ++   +  EP  V++  ++ A
Sbjct: 329 DGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGA 388

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSS 234
             R  R N  L+ +   +   L P D    + LS+
Sbjct: 389 -CRVQR-NMVLAEYAAKKVIALDPEDAGTYTVLSN 421


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/581 (37%), Positives = 331/581 (56%), Gaps = 50/581 (8%)

Query: 21  TPNAL---SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSME 73
           +PNA+   SLL  C +   L   ++IH+   +  L+ D+ V   LI  +C  N     ++
Sbjct: 277 SPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCN----CIQ 332

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRS----KTPIRAIFLFVELLN-SGLLPDDYSFPSL 128
            A   FDR+ + D++ ++ M  GY++S    K  +  +F  +E +   G+ P+  +F S+
Sbjct: 333 DARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSI 392

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS--------------- 173
           LKAC+  GA  LE+G+Q+H    K+G  S+  + T + N+YA+C                
Sbjct: 393 LKACSVHGA--LEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENK 450

Query: 174 ----------------DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
                           D+ +A ++F  +S   VVS+N +I  YA+S    +   L   ++
Sbjct: 451 NVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMK 510

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
               +P  VT++S L +C  L +L+ GK +H    K GL+    V T+LI M++KCG + 
Sbjct: 511 VEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVT 570

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           +A +VFD +S +DT AW+AM+  Y  HG G +++ +F+ M+K +V P+EITF  ++ AC 
Sbjct: 571 EARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACG 630

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
             GLV EG   F  M++ + + PG +HYGCMVDLLGRAGRL EA  FI  +P +    +W
Sbjct: 631 RAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVW 690

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             LL +C SH+N+ LA+     I  L+ S+   YV LSN+ A+AGRW+D   +RK+M D+
Sbjct: 691 HALLGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDK 750

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           G+ K  G SSIE++  +  F + D  H     +   L+ L KE+K  GY PD   V H D
Sbjct: 751 GLKKDRGESSIEIDGRIHTFVAEDCAHPEIDSIHAELEMLTKEMKEAGYTPDMRFVLH-D 809

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +++ +KE AL +HSEKLAI +GLL TPPGT IR++KNLRVC
Sbjct: 810 VDEVQKERALCHHSEKLAIAYGLLKTPPGTPIRIMKNLRVC 850



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 119/412 (28%), Positives = 209/412 (50%), Gaps = 15/412 (3%)

Query: 17  LCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSME 73
           L  N+     ++  C   R     K +H    +  L  D+ +   LINF ++    +S+E
Sbjct: 74  LLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVE 133

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
               +F R+   D+V +++M   Y+ +  P +A   F  + ++ + P+  +F S+LKAC 
Sbjct: 134 Q---VFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACN 190

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
                 LE+ +++H      G+ +++ V T LI +Y++C ++  A  IF+ + E  VVS+
Sbjct: 191 --NYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSW 248

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
            AII A A+  + NEA  L+ ++ +  + P  VT +S L+SC    +L+ G+ IH +I +
Sbjct: 249 TAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISE 308

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL- 312
            GL+  V V  ALI M+ KC  + DA   FD MS +D  +WSAMI  YA  G   K  L 
Sbjct: 309 RGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLD 368

Query: 313 ----MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
               + E M +  V P+++TF+ +L ACS  G +++G    ++   K G          +
Sbjct: 369 EVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQG-RQIHAEISKVGFESDRSLQTAI 427

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
            ++  + G + EA +   ++  K+  + W +LL+      +L  A++V   +
Sbjct: 428 FNMYAKCGSIYEAEQVFSKMENKNV-VAWASLLTMYIKCGDLTSAEKVFSEM 478



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 117/485 (24%), Positives = 222/485 (45%), Gaps = 48/485 (9%)

Query: 20  NTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N    LS+L  C ++  L   ++IH V   + ++ D+ V T LI   T       +  A 
Sbjct: 178 NRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALI---TMYSKCGEISLAC 234

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +F ++ E ++V +  + +  ++ +    A  L+ ++L +G+ P+  +F SLL +C    
Sbjct: 235 EIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNT-- 292

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
            EAL  G+++H    + GL +++ V   LI +Y +C+ ++ AR  F+ +S+  V+S++A+
Sbjct: 293 PEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAM 352

Query: 197 ITAYARSSRPN-----EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           I  YA+S   +     E   L   ++   + P  VT +S L +C++ G+L+ G+ IH  I
Sbjct: 353 IAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEI 412

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSA--------------- 296
            K G +    + TA+ +M+AKCG + +A  VF  M  K+  AW++               
Sbjct: 413 SKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAE 472

Query: 297 ----------------MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG 340
                           MI  YA  G   K   +   M      PD +T + +L AC    
Sbjct: 473 KVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALS 532

Query: 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400
            ++ G    ++   K G+         ++ +  + G + EA    D++  + T + W  +
Sbjct: 533 ALERG-KLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDT-VAWNAM 590

Query: 401 LSSCSSHNNLGLAKQVIERIF-ELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459
           L+    H     A  + +R+  E    +   +  + + C RAG  ++   + ++M++   
Sbjct: 591 LAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFR 650

Query: 460 LKVPG 464
           +K PG
Sbjct: 651 MK-PG 654



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 113/463 (24%), Positives = 220/463 (47%), Gaps = 66/463 (14%)

Query: 106 AIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTL 165
           AI L   +   GLL +  ++  +++ CA +     E+GK +H    +LGL  ++Y+  +L
Sbjct: 62  AIQLLGIIKQRGLLVNSNTYGCIIEHCAKL--RRFEDGKMVHKQLDELGLAIDIYLGNSL 119

Query: 166 INLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTD 225
           IN Y++  DV +  ++F  ++   VV+++++I AYA ++ P +A   F  +++ N++P  
Sbjct: 120 INFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNR 179

Query: 226 VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285
           +T LS L +C     L+  + IH  +K  G++  V V TALI M++KCG +  A  +F  
Sbjct: 180 ITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQK 239

Query: 286 MSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS-------- 337
           M  ++  +W+A+I A A H + +++  ++E+M++A +SP+ +TF+ LL +C+        
Sbjct: 240 MKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRG 299

Query: 338 ---HTGLVDEGW-------NYFYSMRDKYGIVPGIKH------------YGCMVDLLGRA 375
              H+ + + G        N   +M  K   +   +             +  M+    ++
Sbjct: 300 RRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQS 359

Query: 376 G-----RLDEAYRFIDEL---PIKSTPILWRTLLSSCSSHNNLGLAKQVIERI----FEL 423
           G      LDE ++ ++ +    +    + + ++L +CS H  L   +Q+   I    FE 
Sbjct: 360 GYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFES 419

Query: 424 DDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGC-----------------S 466
           D S       + N+ A+ G   + + +   M+++ V+                      S
Sbjct: 420 DRSL---QTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFS 476

Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPD 509
            +   NVV       G ++ S D+ K   EL+  +K+ G+ PD
Sbjct: 477 EMSTRNVVSWNLMIAG-YAQSGDIAKVF-ELLSSMKVEGFQPD 517



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 148/318 (46%), Gaps = 35/318 (11%)

Query: 20  NTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQ-------NPTT 69
           N    +S+L  C+    L   +QIHA   K   ++D ++ T + N   +           
Sbjct: 385 NKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVF 444

Query: 70  SSMEH---------------------AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIF 108
           S ME+                     A  +F  +   ++V +N M  GY++S    +   
Sbjct: 445 SKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFE 504

Query: 109 LFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINL 168
           L   +   G  PD  +  S+L+AC  + A  LE GK +H  A+KLGL S+  V T+LI +
Sbjct: 505 LLSSMKVEGFQPDRVTIISILEACGALSA--LERGKLVHAEAVKLGLESDTVVATSLIGM 562

Query: 169 YAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTM 228
           Y++C +V  AR +F+ IS    V++NA++  Y +     EA+ LF+ + +  + P ++T 
Sbjct: 563 YSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITF 622

Query: 229 LSALSSCALLGSLDLGKWIHEYIKK-YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS 287
            + +S+C   G +  G+ I   +++ + +    +    ++D+  + GRL +A      M 
Sbjct: 623 TAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMP 682

Query: 288 GK-DTQAWSAMIVAYATH 304
            + D   W A++ A  +H
Sbjct: 683 CEPDISVWHALLGACKSH 700



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 115/238 (48%), Gaps = 3/238 (1%)

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++ R  EA+ L   +++R L     T    +  CA L   + GK +H+ + + GL   + 
Sbjct: 55  KAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIY 114

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           +  +LI+ ++K G +     VF  M+ +D   WS+MI AYA +    K+   FE M  A 
Sbjct: 115 LGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDAN 174

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           + P+ ITFL +L AC++  ++++     +++    G+   +     ++ +  + G +  A
Sbjct: 175 IEPNRITFLSILKACNNYSMLEKA-REIHTVVKASGMETDVAVATALITMYSKCGEISLA 233

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS-HGGDYVILSNLC 438
                ++  ++  + W  ++ + + H  L  A ++ E++ +   S +   +V L N C
Sbjct: 234 CEIFQKMKERNV-VSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSC 290


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/554 (37%), Positives = 331/554 (59%), Gaps = 8/554 (1%)

Query: 6   SPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQ 65
           +PP +     K        LSLL RC S    KQ+HA  +K  L  D    + L+  C  
Sbjct: 18  NPPQSSELNAKF---NVQGLSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVATCAL 74

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSF 125
           +    SME+A  +F +I EP    +NTM RG   S     A+ L+VE+L  G+ PD++++
Sbjct: 75  S-RWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTY 133

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
           P +LKAC+ +GA  L+EG Q+H    K GL  +++V   LIN+Y +C  +E A  +FE +
Sbjct: 134 PFVLKACSLLGA--LKEGVQIHAHVFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQM 191

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFRELQ-ERNLKPTDVTMLSALSSCALLGSLDLG 244
            E  V S+++II A+A     +E L L  ++  E   +  +  ++SALS+C  LGS + G
Sbjct: 192 DEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFG 251

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
           + IH  + +   +  V V T+LIDM+ K G L+  + VF NM+ K+  +++ +I   A H
Sbjct: 252 RCIHGILLRNISELNVAVKTSLIDMYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIH 311

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364
           G+G +++ +F +M++  ++PD++ ++G+L ACSH GLV+EG   F  ++ ++ I P I+H
Sbjct: 312 GRGREALSVFSDMLEEGLAPDDVVYVGVLSACSHAGLVNEGLQCFNRLQFEHKIKPTIQH 371

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
           YGCMVDL+GRAG L  AY  I  +PIK   ++WR+LLS+C  H+NL + +   E IF+L+
Sbjct: 372 YGCMVDLMGRAGMLKGAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFKLN 431

Query: 425 DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVH 484
             + GDY++L+N+ ARA +W DV  +R  M ++ +++ PG S +E N  V +F S D   
Sbjct: 432 QHNPGDYLVLANMYARAKKWADVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQ 491

Query: 485 SYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTP 544
                +   + ++  +LK  GY PD S V   D++++EK   L++HS+KLAI F L+ T 
Sbjct: 492 PQCETIYDMIQQMEWQLKFEGYTPDMSQVLL-DVDEDEKRQRLKHHSQKLAIAFALIQTS 550

Query: 545 PGTTIRVVKNLRVC 558
            G+ IR+ +N+R+C
Sbjct: 551 EGSRIRISRNIRMC 564


>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/546 (39%), Positives = 333/546 (60%), Gaps = 20/546 (3%)

Query: 29  PRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQ--NPTTSSMEHAHLLFDRIPEPD 86
           P   +   LKQIHA T++T   N  N +    N      + T  ++ +A  +F   P P+
Sbjct: 30  PTTITMPQLKQIHAQTLRTVNSNHPNAIFLYTNILQHYSSLTQPNLTYATRVFHHFPNPN 89

Query: 87  IVLFNTMARGYSRSKT---PIRAIFLFVELLN---SGLLPDDYSFPSLLKACACVGAEAL 140
             ++NT+ R Y+RS       +A+ L+  ++       +PD+++FP +LKACA   +  L
Sbjct: 90  SFMWNTLIRVYARSTNTNHKHKAMELYKTMMTMEEKTAVPDNHTFPIVLKACAYTFS--L 147

Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY 200
            EGKQ+H   +K G  S+ Y+C +L++ YA C  ++ A ++F  +SE   VS+N +I +Y
Sbjct: 148 CEGKQVHAHVLKHGFESDTYICNSLVHFYATCGCLDLAEKMFYKMSERNEVSWNIMIDSY 207

Query: 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY- 259
           A+    + AL +F E+Q R   P   TM S +S+CA LG+L LG W+H YI K   DK  
Sbjct: 208 AKGGIFDTALRMFGEMQ-RVHDPDGYTMQSVISACAGLGALSLGLWVHAYILK-KCDKNM 265

Query: 260 ---VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
              V VNT L+DM+ K G L+ A  VF++M+ +D  AW++MI+  A HG+   ++  +  
Sbjct: 266 VDDVLVNTCLVDMYCKSGELEIAKQVFESMAFRDLNAWNSMILGLAMHGEAKAALNYYVR 325

Query: 317 MMKAQ-VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
           M+K + + P+ ITF+G+L AC+H G+VDEG  +F  M  +Y + P ++HYGC+VDL  RA
Sbjct: 326 MVKVEKIVPNSITFVGVLSACNHRGMVDEGIVHFDMMTKEYNVEPRLEHYGCLVDLFARA 385

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSC-SSHNNLGLAKQVIERIFELDDS--HGGDYV 432
           GR++EA   + E+ IK   ++WR+LL +C   + ++ L++++ +++FE + S    G YV
Sbjct: 386 GRINEALNLVSEMSIKPDAVIWRSLLDACCKQYASVELSEEMAKQVFESEGSVCSSGVYV 445

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
           +LS + A A RW DV  LRKLM ++GV K PGCS IE++ VV EFF+GD  H  S ++ K
Sbjct: 446 LLSKVYASACRWNDVGLLRKLMSEKGVTKEPGCSIIEIDGVVHEFFAGDTTHPKSENIYK 505

Query: 493 ALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVV 552
            + E+ ++L+ +GY+PD S     D  ++ K   LR HSE+LAI FG+LN+ P   IRV 
Sbjct: 506 VVTEIEEKLESIGYLPDYSGAPMVDEVNDGKLNTLRLHSERLAIAFGILNSKPDVPIRVF 565

Query: 553 KNLRVC 558
           KNLRVC
Sbjct: 566 KNLRVC 571


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/546 (36%), Positives = 332/546 (60%), Gaps = 13/546 (2%)

Query: 20  NTPNAL---SLLPRCT---SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSME 73
           N P+     SLL  C     F+  K +H   +K  L +DL + T L+N          ++
Sbjct: 75  NVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNM---YAACGDLK 131

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
            A  LF+R+   + V++ +M  GY ++  P  A+ L+ ++   G  PD+ +  +L+ ACA
Sbjct: 132 SARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACA 191

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
            +  + L  G +LH    ++ +     + + L+N+YA+C D++ AR++F+ +S+  V ++
Sbjct: 192 EL--KDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAW 249

Query: 194 NAIITAYARSSRPNEALSLFRELQE-RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +A+I  Y +++R  EAL LFRE+    N++P +VT+L+ +S+CA LG L+ G+W+H+YI 
Sbjct: 250 SALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYIT 309

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           +      V +N +LIDM +KCG +D A  +FD+MS KD  +W++M+  +A HG G +++ 
Sbjct: 310 RTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALA 369

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
            F  M    + PDEITF+G+L ACSH GLV EG   FY +   YG+    +HYGCMVDLL
Sbjct: 370 QFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLL 429

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432
            RAG L EA  FI  +P++    +W ++L +C  +NNL L ++    + +L+ ++ G Y+
Sbjct: 430 CRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYI 489

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
           +LSN+ A+   W +V  +R+LM ++G+ K PGCSS+ ++N+   F +GD  H    ++  
Sbjct: 490 LLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISI 549

Query: 493 ALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVV 552
            L ++ ++LK+ GYV DTS V   +++D +KE ++  HSEKLA+ +GLL +  G  I ++
Sbjct: 550 MLRQVREKLKLAGYVADTSEVLL-NIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVIL 608

Query: 553 KNLRVC 558
           KNLRVC
Sbjct: 609 KNLRVC 614



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 120/376 (31%), Positives = 213/376 (56%), Gaps = 15/376 (3%)

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL-NSGLLPDDYSFPSLLKAC 132
           +A+ +F    E D++ +N+M R +  S  P RA+  + E+L  S  +PD ++FPSLLK C
Sbjct: 30  YAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGC 89

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
           A +     + GK LH   +K  L+S+LY+ TTL+N+YA C D+++AR +FE +     V 
Sbjct: 90  ALL--LEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVV 147

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           + ++I+ Y ++  PNEAL L+++++E    P +VTM + +S+CA L  L +G  +H +I+
Sbjct: 148 WTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIR 207

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           +  +     + +AL++M+AKCG L  A  VFD +S KD  AWSA+I  Y  + +  +++ 
Sbjct: 208 EMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQ 267

Query: 313 MFEEMM-KAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVD 370
           +F E+   + + P+E+T L ++ AC+  G ++ G W + Y  R + G    +     ++D
Sbjct: 268 LFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKG--HSVSLNNSLID 325

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE--RIFELDDSHG 428
           +  + G +D A R  D +  K   I W ++++  + H   GL ++ +   R+ +  D   
Sbjct: 326 MFSKCGDIDAAKRIFDSMSYKDL-ISWNSMVNGFALH---GLGREALAQFRLMQTTDLQP 381

Query: 429 GDYVILSNL--CARAG 442
            +   +  L  C+ AG
Sbjct: 382 DEITFIGVLTACSHAG 397



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 148/319 (46%), Gaps = 26/319 (8%)

Query: 175 VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK-PTDVTMLSALS 233
           V  A  +F +  E  V+++N+++ A+  S+ P  AL  + E+ ER+   P   T  S L 
Sbjct: 28  VGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLK 87

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
            CALL    +GK +H  + KY L   + + T L++M+A CG L  A  +F+ M  ++   
Sbjct: 88  GCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVV 147

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           W++MI  Y  +   ++++L++++M +   SPDE+T   L+ AC+    +  G      +R
Sbjct: 148 WTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIR 207

Query: 354 D---KYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
           +   K   V G      +V++  + G L  A +  D+L  K     W  L+     +N  
Sbjct: 208 EMDMKICAVLG----SALVNMYAKCGDLKTARQVFDKLSDKDV-YAWSALIFGYVKNNRS 262

Query: 411 GLAKQVIERIFELDDSHGGDYVILSNLCARA-------GRWEDVDYLRKLMKDRGVLKVP 463
             A Q+   +    +    +  IL+ + A A       GRW   DY+ +  K        
Sbjct: 263 TEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVH-DYITRTQKGH------ 315

Query: 464 GCSSIEVNNVVREFFSGDG 482
              S+ +NN + + FS  G
Sbjct: 316 ---SVSLNNSLIDMFSKCG 331


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/577 (36%), Positives = 334/577 (57%), Gaps = 52/577 (9%)

Query: 31  CTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFC-TQNPTTSSMEHAHLLFDRIPEPDIVL 89
           C + R L QIHAV IK+    D     +++ FC T +     +++AH +F+++P+ +   
Sbjct: 33  CRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFS 92

Query: 90  FNTMARGYSRSK--TPIRAIFLFVELLNSGLL-PDDYSFPSLLKACACVGAEALEEGKQL 146
           +NT+ RG+S S     + AI LF E+++   + P+ ++FPS+LKACA  G   ++EGKQ+
Sbjct: 93  WNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGK--IQEGKQI 150

Query: 147 HCFAIKLGLNSNLYVCTTLINLYAECS--------------------------------- 173
           H  A+K G   + +V + L+ +Y  C                                  
Sbjct: 151 HGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVL 210

Query: 174 ------------DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNL 221
                       D +AAR +F+ + +  VVS+N +I+ Y+ +    +A+ +FRE+++ ++
Sbjct: 211 WNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDI 270

Query: 222 KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVS 281
           +P  VT++S L + + LGSL+LG+W+H Y +  G+     + +ALIDM++KCG ++ A+ 
Sbjct: 271 RPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIH 330

Query: 282 VFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341
           VF+ +  ++   WSAMI  +A HGQ   +I  F +M +A V P ++ ++ LL ACSH GL
Sbjct: 331 VFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGL 390

Query: 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
           V+EG  YF  M    G+ P I+HYGCMVDLLGR+G LDEA  FI  +PIK   ++W+ LL
Sbjct: 391 VEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALL 450

Query: 402 SSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLK 461
            +C    N+ + K+V   + ++     G YV LSN+ A  G W +V  +R  MK++ + K
Sbjct: 451 GACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRK 510

Query: 462 VPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDE 521
            PGCS I+++ V+ EF   D  H  + ++   L E+  +L++ GY P T+ V   ++E+E
Sbjct: 511 DPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLL-NLEEE 569

Query: 522 EKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +KE  L YHSEK+A  FGL++T PG  IR+VKNLR+C
Sbjct: 570 DKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRIC 606


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/520 (40%), Positives = 304/520 (58%), Gaps = 6/520 (1%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           ++H++ +K   + D  V   LIN  T+      +++A  +FD IP+ +   +     GY 
Sbjct: 129 KMHSLVVKAGCEADAFVKISLINLYTK---CGFIDNAFKVFDDIPDKNFASWTATISGYV 185

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
                  AI +F  LL  GL PD +S   +L AC   G   L  G+ +  +  + G+  N
Sbjct: 186 GVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGD--LRSGEWIDEYITENGMVRN 243

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
           ++V T L++ Y +C ++E AR +F+ + E  +VS++++I  YA +  P EAL LF ++  
Sbjct: 244 VFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLN 303

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
             LKP    M+  L SCA LG+L+LG W    I          + TALIDM+AKCGR+D 
Sbjct: 304 EGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDR 363

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A  VF  M  KD   W+A I   A  G    ++ +F +M K+ + PD  TF+GLL AC+H
Sbjct: 364 AWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTH 423

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
            GLV+EG  YF SM   + + P I+HYGCMVDLLGRAG LDEA++ I  +P+++  I+W 
Sbjct: 424 AGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWG 483

Query: 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458
            LL  C  H +  L + V++++  L+  H G+YV+LSN+ A + +WE+   +R +M +RG
Sbjct: 484 ALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERG 543

Query: 459 VLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDM 518
           V K+PG S IEV+ VV +F  GD  H  S  +   L EL K+LK  GYVP T  V   D+
Sbjct: 544 VKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGYVPTTDHVLF-DI 602

Query: 519 EDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           E+EEKE  +  HSEKLA+ FGL++T P   I VVKNLRVC
Sbjct: 603 EEEEKEHFIGCHSEKLAVAFGLISTAPNDKILVVKNLRVC 642



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 121/394 (30%), Positives = 213/394 (54%), Gaps = 11/394 (2%)

Query: 27  LLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPD 86
           L+   +  + LK IHA  ++  L  D  +L K++ F      T+   ++  + D+  EP+
Sbjct: 16  LIQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTN---YSFRILDQTKEPN 72

Query: 87  IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQL 146
           I LFNTM RG   +     +I ++  +   GL PD ++FP +LKACA V    L  G ++
Sbjct: 73  IFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSEL--GVKM 130

Query: 147 HCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRP 206
           H   +K G  ++ +V  +LINLY +C  ++ A ++F++I +    S+ A I+ Y    + 
Sbjct: 131 HSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKC 190

Query: 207 NEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
            EA+ +FR L E  L+P   +++  LS+C   G L  G+WI EYI + G+ + V V TAL
Sbjct: 191 REAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATAL 250

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           +D + KCG ++ A SVFD M  K+  +WS+MI  YA++G   +++ +F +M+   + PD 
Sbjct: 251 VDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDC 310

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
              +G+L +C+  G ++ G ++  ++ +    +        ++D+  + GR+D A+    
Sbjct: 311 YAMVGVLCSCARLGALELG-DWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFR 369

Query: 387 ELPIKSTPILWRTLLS--SCSSH--NNLGLAKQV 416
            +  K   ++W   +S  + S H  + LGL  Q+
Sbjct: 370 GMR-KKDRVVWNAAISGLAMSGHVKDALGLFGQM 402


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/559 (37%), Positives = 334/559 (59%), Gaps = 7/559 (1%)

Query: 1   MATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLI 60
           + +   PP  QSP           +SLL +C++    KQ HA  +K  L  D    + L+
Sbjct: 13  LVSREDPP--QSPELSFKLGEKECVSLLKKCSNMEEFKQSHARILKLGLFGDSFCASNLV 70

Query: 61  NFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP 120
             C  +    SM++A  +F ++ E     FNTM RG+ +      A+  + E+   G+ P
Sbjct: 71  ATCALSDW-GSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKP 129

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           D++++P+LLKACA +   A+EEG Q+H   +KLGL ++++V  +LI++Y +C ++     
Sbjct: 130 DNFTYPTLLKACARL--PAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCA 187

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLFREL-QERNLKPTDVTMLSALSSCALLG 239
           +FE ++E  V S++A+ITA+A     ++ L L  ++  E   +  +  ++S LS+C  LG
Sbjct: 188 VFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLG 247

Query: 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIV 299
           +LDLG+ +H ++ +      V V T+LI+M+ KCG L   + +F  M+ K+  ++S MI 
Sbjct: 248 ALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMIS 307

Query: 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359
             A HG G + + +F EM++  + PD+I ++G+L ACSH GLV EG   F  M+ ++GI 
Sbjct: 308 GLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIE 367

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIER 419
           P I+HYGCMVDL+GRAG++DEA   I  +P++   +LWR+LLS+   HNNL   +   ++
Sbjct: 368 PTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQ 427

Query: 420 IFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFS 479
           +F+LD     DYV+LSN+ A+A RWEDV   R  M  +G+ + PG S +EV   +  F S
Sbjct: 428 LFKLDSQKASDYVVLSNMYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFVS 487

Query: 480 GDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFG 539
            D  H  S  + + L ++  +LK  GY PDT+ V   D+++EEK+  L  HS+KLAI + 
Sbjct: 488 QDAGHPQSESVYEMLYQMEWQLKFEGYSPDTTQV-LCDVDEEEKKQRLSGHSQKLAIAYA 546

Query: 540 LLNTPPGTTIRVVKNLRVC 558
           L++T  G+ IR+V+NLR+C
Sbjct: 547 LIHTSQGSPIRIVRNLRMC 565


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/559 (37%), Positives = 320/559 (57%), Gaps = 38/559 (6%)

Query: 34  FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM 93
            + LKQI A  IKT +  +  + TK +  CT +P    + +A  +F+ I  P+  ++N +
Sbjct: 1   MKQLKQIQAQMIKTAIITEPKLATKFLTLCT-SPHVGDLLYAQRVFNGITSPNTFMWNAI 59

Query: 94  ARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL 153
            R YS S  P  A   + ++L+S +  + Y+FP LL+AC  +   A+ E  Q+H   IKL
Sbjct: 60  IRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNL--LAMGEALQVHGLVIKL 117

Query: 154 GLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS--------- 204
           G  S+++    L+++YA C ++  AR++F+NI E   VS+N +I  Y +S          
Sbjct: 118 GFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVF 177

Query: 205 ----------------------RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242
                                 +  EALSL  E+Q    +   V + S L++CA LG+LD
Sbjct: 178 LDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALD 237

Query: 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG--KDTQAWSAMIVA 300
            G+W+H Y+   G+D    +  AL++M+ KCG +++A+SVF  + G  KD   W+AMI  
Sbjct: 238 QGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDG 297

Query: 301 YATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP 360
           +A HG+G +++  F  M +  + P+ ITF  +L ACS+ GLV+EG   F SM+  Y + P
Sbjct: 298 FAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNP 357

Query: 361 GIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
            I+HYGCMVDLLGR+GRLDEA   I ++P+K + ++W  LL +C  H +  L  QV   +
Sbjct: 358 SIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIHRDFLLGSQVGAHL 417

Query: 421 FELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSG 480
            E+D  H G Y+ L+ + A  G+W++   +R  MK  GV   PG SS+ +N +V EF +G
Sbjct: 418 VEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGIVHEFLAG 477

Query: 481 DGVHSYSTDLQKALDELVKELKM-VGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFG 539
              H     +Q  L ++ + L+   GY P T  +   D+E+EEKE A+  HSEKLAI FG
Sbjct: 478 HQDHPQMEQIQLKLKQIAERLRQDEGYEPATKDLLL-DLENEEKETAMAQHSEKLAIAFG 536

Query: 540 LLNTPPGTTIRVVKNLRVC 558
           L+NT PGTTIRV+KNLR+C
Sbjct: 537 LINTKPGTTIRVIKNLRIC 555


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 220/557 (39%), Positives = 323/557 (57%), Gaps = 45/557 (8%)

Query: 38  KQIHAVTIKTHLQNDL---NVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMA 94
           K+IH   +K  L  D+   N L  +   C      + +E+A L+FD++ E D+V ++TM 
Sbjct: 144 KEIHGFVLKKGLDRDVFVGNALMLMYGEC------ACVEYARLVFDKMMERDVVSWSTMI 197

Query: 95  RGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
           R  SR+K    A+ L  E+    + P + +  S++   A      +  GK +H + I+  
Sbjct: 198 RSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFA--DTANMRMGKAMHAYVIRNS 255

Query: 155 LNSNLYVCTT--LINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL 212
            N ++ V TT  L+++YA+C  +  AR++F  +++  VVS+ A+I    RS+R  EA +L
Sbjct: 256 NNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARAL 315

Query: 213 FRELQERNL-------------------------------KPTDVTMLSALSSCALLGSL 241
           F   Q R++                               +PT VT++S LS CA+ G+L
Sbjct: 316 FDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGAL 375

Query: 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
           DLGKW+H YI K  ++    +NTAL+DM+AKCG ++ A  +F     +D   W+A+I  +
Sbjct: 376 DLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGF 435

Query: 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG 361
           A HG G +++ +F EM +  V P++ITF+GLL+ACSH GLV EG   F  M   +G+VP 
Sbjct: 436 AMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQ 495

Query: 362 IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421
           I+HYGCMVDLLGRAG LDEA+  I  +PIK   I+W  L+++C  H N  L +    ++ 
Sbjct: 496 IEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLL 555

Query: 422 ELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGD 481
           E++  + G  V++SN+ A A RW D   +RK MK  G+ K PG S IEVN  V EF  GD
Sbjct: 556 EIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGD 615

Query: 482 GVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLL 541
             H     + + L E+ ++L   GYVPDTS V   ++++EEKE AL YHSEKLA+ FGL+
Sbjct: 616 QSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLL-NIDEEEKETALTYHSEKLAMAFGLI 674

Query: 542 NTPPGTTIRVVKNLRVC 558
           +T P T IR+VKNLRVC
Sbjct: 675 STAPSTPIRIVKNLRVC 691



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 123/474 (25%), Positives = 227/474 (47%), Gaps = 73/474 (15%)

Query: 6   SPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQ 65
           +P   Q+PP      +P+   L    ++    KQIHA  IKTH  + L +   L +F   
Sbjct: 37  NPTPLQTPP-----TSPSQHDL----STLEQTKQIHAHIIKTHFHHALQI--PLNDF--- 82

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSF 125
            P+  S           P      +N +   Y++   P  A+ ++ +L       D++  
Sbjct: 83  -PSGLS-----------PSAQ---WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMA 127

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
           PS+LKAC  V    L  GK++H F +K GL+ +++V   L+ +Y EC+ VE AR +F+ +
Sbjct: 128 PSVLKACGQVSWTQL--GKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKM 185

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245
            E  VVS++ +I + +R+   + AL L RE+    ++P++V M+S ++  A   ++ +GK
Sbjct: 186 MERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGK 245

Query: 246 WIHEYIKKYGLDKYVKV--NTALIDMHAKCG----------------------------- 274
            +H Y+ +   ++++ V   TAL+DM+AKCG                             
Sbjct: 246 AMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIR 305

Query: 275 --RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
             RL++A ++FD+   +D   W+AM+ AYA      ++  +F++M  + V P ++T + L
Sbjct: 306 SNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSL 365

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L  C+  G +D G  + +S  DK  +         +VD+  + G ++ A R   E  I  
Sbjct: 366 LSLCAVAGALDLG-KWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIE-AISR 423

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS----HGGDYVILSNLCARAG 442
              +W  +++  + H   G  ++ ++   E++      +   ++ L + C+ AG
Sbjct: 424 DICMWNAIITGFAMH---GYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAG 474



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 142/301 (47%), Gaps = 13/301 (4%)

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
            +N +IT+Y + ++P  AL+++ +L++ + +  +    S L +C  +    LGK IH ++
Sbjct: 91  QWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFV 150

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            K GLD+ V V  AL+ M+ +C  ++ A  VFD M  +D  +WS MI + + + +   ++
Sbjct: 151 LKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMAL 210

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVD 370
            +  EM   QV P E+  + ++   + T  +  G   + Y +R+      G+     ++D
Sbjct: 211 ELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLD 270

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430
           +  + G L  A +  + L  K T + W  +++ C   N L  A+ +       D +   D
Sbjct: 271 MYAKCGHLGLARQLFNGLTQK-TVVSWTAMIAGCIRSNRLEEARAL------FDSTQNRD 323

Query: 431 YVILSNLCARAGRWEDVDYLRKL---MKDRGV--LKVPGCSSIEVNNVVREFFSGDGVHS 485
            +I + + +   +   +D    L   M+  GV   KV   S + +  V      G  VHS
Sbjct: 324 VMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHS 383

Query: 486 Y 486
           Y
Sbjct: 384 Y 384


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 227/590 (38%), Positives = 329/590 (55%), Gaps = 44/590 (7%)

Query: 1   MATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLI 60
           M+ TP+P    +PP     + P  LSL   C + R LKQ+HA  I  H  N    L+ L 
Sbjct: 54  MSRTPNP--LTNPP-----SNPQILSLFNPCKTLRHLKQVHAQIITHH--NSPFQLSALA 104

Query: 61  NFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP 120
           +    +P  + + +A  +F  +  P   L+N++ R  S SKTP+ A+ L+  +L SGL P
Sbjct: 105 SLSALSPFPTFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKP 164

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           D  ++P ++KAC    +     G  +H   +K G   + Y+ ++LI+LYA   D+ AA++
Sbjct: 165 DHMTYPFVIKACN--ESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQ 222

Query: 181 IFENISEPCVVSYNAIITAYARS-------------------------------SRPNEA 209
           +F   S   VVS+NA+I  Y +                                 +PNEA
Sbjct: 223 LFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEA 282

Query: 210 LSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDM 269
           L+LF +++   +KPT+ T++S LS+CA LG+LD G  +H YI    ++    V TAL+DM
Sbjct: 283 LALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDM 342

Query: 270 HAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITF 329
           +AKCG++  A  VF+ M  KD  AW+ +I   A HG   ++  +F+EM +A V P++ITF
Sbjct: 343 YAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITF 402

Query: 330 LGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389
           + +L ACSH G+VDEG      M   YGI P ++HYGC++DLL RAG L+EA   I  +P
Sbjct: 403 VAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMP 462

Query: 390 IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDY 449
           ++  P     LL  C  H N  L + V +R+  L   H G Y++LSN+ A A +W+D   
Sbjct: 463 MEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARK 522

Query: 450 LRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK-MVGYVP 508
           +R LMK  G+ KVPG S IE+  +V  F +GD  H  S  + + L+E+   LK  +GY  
Sbjct: 523 VRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSA 582

Query: 509 DTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           DT  V   DME+E+KE AL  HSEKLAI +GLL+      IR+VKNLRVC
Sbjct: 583 DTGNVLL-DMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVC 631


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/522 (39%), Positives = 307/522 (58%), Gaps = 7/522 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +++H+  +   L++D+ V   L+           M  A ++FDR+ E D+  +NTM  GY
Sbjct: 181 RRVHSEVVVCGLESDIYVGNSLL---AMYAKFGDMGTARMVFDRMAERDLTSWNTMISGY 237

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL-N 156
           +++     A  +F  +  +GL  D  +   LL ACA +  +A++EGK +H +A++  + N
Sbjct: 238 AKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADL--KAVKEGKVIHGYAVRNSIGN 295

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            N +   +LI +Y  C+ +  ARR+FE +     VS+N++I  YAR+    E+L LFR +
Sbjct: 296 YNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRM 355

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
                 P  VT ++ L +C  + +L  G  IH Y+ K G D    V TAL+DM++KCG L
Sbjct: 356 ALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSL 415

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
             +  VFD M  K   +WSAM+  Y  HG+G ++I + + M    V PD   F  +L AC
Sbjct: 416 ACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSAC 475

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           SH GLV EG   FY M  +Y + P + HY CMVDLLGRAG LDEAY  I  + IK T  +
Sbjct: 476 SHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDI 535

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
           W  LL++   H N+ LA+   +++F+++      Y+ LSN+ A   RW+DV+ +R +++ 
Sbjct: 536 WAALLTASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRR 595

Query: 457 RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHG 516
           +G+ K PGCS IE++N+V  F  GD  H  + D+   L+EL ++LK  GY PDTSLV + 
Sbjct: 596 KGLKKSPGCSFIELDNMVHRFLVGDKSHQQTEDIYAKLNELKQQLKEAGYKPDTSLVFY- 654

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           D+E+E KE  L  HSE+LAI F L+NT PGT IR+ KNLRVC
Sbjct: 655 DVEEEVKEKMLWDHSERLAIAFALINTGPGTVIRITKNLRVC 696



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/402 (29%), Positives = 209/402 (51%), Gaps = 11/402 (2%)

Query: 8   PITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIK-THLQNDLNVLTKLINFCTQN 66
           P+ Q P   L       L       SF+  +Q+HA  I  + L+N+  + TKL  F    
Sbjct: 51  PLQQYPLTSL--QCGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAF---Y 105

Query: 67  PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFP 126
                M  A ++FD I   +  L+N M RGY+ +  P++++ L+ E+L  G   D++++P
Sbjct: 106 AGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYP 165

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS 186
            +LKAC  +    +E G+++H   +  GL S++YV  +L+ +YA+  D+  AR +F+ ++
Sbjct: 166 FVLKACGDL--LLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMA 223

Query: 187 EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW 246
           E  + S+N +I+ YA+++    A  +F  + +  L     T+L  LS+CA L ++  GK 
Sbjct: 224 ERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKV 283

Query: 247 IHEYIKKYGLDKYVKVNT-ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
           IH Y  +  +  Y K  T +LI+M+  C  + DA  +F+ +  KDT +W++MI+ YA +G
Sbjct: 284 IHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNG 343

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY 365
              +S+ +F  M      PD++TF+ +L AC     +  G +  +S   K G        
Sbjct: 344 DAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMS-IHSYLVKKGFDANTIVG 402

Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
             +VD+  + G L  + R  DE+P KS  + W  +++    H
Sbjct: 403 TALVDMYSKCGSLACSRRVFDEMPDKSL-VSWSAMVAGYGLH 443


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/568 (37%), Positives = 321/568 (56%), Gaps = 37/568 (6%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           P  L  L R  S     +IH +  K    +D  V T L+           +  A L+FD+
Sbjct: 126 PPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRM---YAACGRIAEARLMFDK 182

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +   D+V ++ M  GY +S     A+ LF E+ N  + PD+    ++L AC   G   L 
Sbjct: 183 MFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGN--LS 240

Query: 142 EGKQLH------------------------CFAIKLGLN-------SNLYVCTTLINLYA 170
            GK +H                        C ++ L LN        NL   T ++  Y+
Sbjct: 241 YGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYS 300

Query: 171 ECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLS 230
           +   +E AR +F  + +  +V ++A+I+ YA S  P EAL+LF E+Q   +KP  VTMLS
Sbjct: 301 KLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLS 360

Query: 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290
            +++CA LG+LD  KWIH ++ K G    + +N ALI+M+AKCG L+ A  +FD M  K+
Sbjct: 361 VITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKN 420

Query: 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350
             +W+ MI A+A HG    ++  F +M    + P+ ITF+G+LYACSH GLV+EG   FY
Sbjct: 421 VISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFY 480

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
           SM +++ I P   HYGCMVDL GRA  L EA   ++ +P+    I+W +L+++C  H  +
Sbjct: 481 SMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEI 540

Query: 411 GLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEV 470
            L +   +R+ ELD  H G +V LSN+ A+A RWEDV  +RKLMK +G+ K  GCS  E+
Sbjct: 541 ELGEFAAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFEL 600

Query: 471 NNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYH 530
           NN + EF   D  H ++ ++ + L E+V +LK+VGY P+T  +   D+E+EEK+  + +H
Sbjct: 601 NNEIHEFLVADRSHKHADEIYEKLYEVVSKLKLVGYSPNTCSI-LVDLEEEEKKEVVLWH 659

Query: 531 SEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           SEKLA+ +GL+    G+ IR++KNLRVC
Sbjct: 660 SEKLALCYGLMRDGTGSCIRIIKNLRVC 687



 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 135/455 (29%), Positives = 239/455 (52%), Gaps = 40/455 (8%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
            S L   TS   LKQ+HA  +++ L    ++L KL+   +    +SS+++A  +F+ IP+
Sbjct: 27  FSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKLV--ISSCALSSSLDYALSVFNLIPK 84

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
           P+  L N   R  SRS+ P + + ++  +   GL  D +SFP LLKA + V  ++L EG 
Sbjct: 85  PETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRV--KSLVEGL 142

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           ++H  A KLG +S+ +V T L+ +YA C  +  AR +F+ +    VV+++ +I  Y +S 
Sbjct: 143 EIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSG 202

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
             N+AL LF E++  N++P ++ + + LS+C   G+L  GK IH++I +  +     + +
Sbjct: 203 LFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQS 262

Query: 265 ALIDMHAKCGRLD-------------------------------DAVSVFDNMSGKDTQA 293
           AL+ M+A CG +D                               +A SVF+ M  KD   
Sbjct: 263 ALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVC 322

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSM 352
           WSAMI  YA      +++ +F EM    + PD++T L ++ AC+H G +D+  W + +  
Sbjct: 323 WSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFV- 381

Query: 353 RDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGL 412
            DK G    +     ++++  + G L+ A R  D++P K+  I W  ++S+ + H + G 
Sbjct: 382 -DKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNV-ISWTCMISAFAMHGDAGS 439

Query: 413 AKQVIERIFELD-DSHGGDYVILSNLCARAGRWED 446
           A +   ++ + + + +G  +V +   C+ AG  E+
Sbjct: 440 ALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEE 474


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/578 (37%), Positives = 340/578 (58%), Gaps = 45/578 (7%)

Query: 20  NTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLF 79
           +T   +S+L +C S   L+QIHA  IKT+L N    +++LI FC+ +  +  +++A  +F
Sbjct: 5   STNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVF 64

Query: 80  DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN-----SGLLPDDYSFPSLLKACAC 134
            RI  P+  +F  + +G+S +  P+ ++ L+  +L+     SG+   ++S PS+LKAC  
Sbjct: 65  SRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGV---EFSIPSVLKACGK 121

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF------------ 182
           +   A +EG+Q+H   +K  L  + +V  +++ +Y +  ++E ARR+F            
Sbjct: 122 L--LAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWN 179

Query: 183 -------------------ENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKP 223
                              E +S+  VV++ ++I+AY ++  P +AL LFRE+    L+P
Sbjct: 180 SMIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRP 239

Query: 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK-VNTALIDMHAKCGRLDDAVSV 282
               ++S LS+ A LG ++ GKW+H Y+    ++     + +ALIDM++KCG +++A  V
Sbjct: 240 DGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHV 299

Query: 283 FDNMSGK-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341
           F ++S + +   W++MI   A HG   +++ +F EM +  + P+EITFLGLL  CSH GL
Sbjct: 300 FRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGL 359

Query: 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
           V+EG  YF SM +KY IVP I+HYGCM+DL GRAGRL++A   I  +P ++  + W+ +L
Sbjct: 360 VEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAIL 419

Query: 402 SSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLK 461
           S+   H ++ + K    R  EL       YV+LSN+ A+AGRW+DV  +R +M+ RGV K
Sbjct: 420 SASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKK 479

Query: 462 VPGCSSIEVNNVVREFFSGDGV-HSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMED 520
           + GCSS+ VN  V EF  G  +  SYS  +   + E+V  LK+ GY PD + V   D+ED
Sbjct: 480 IAGCSSMLVNGKVHEFLLGKELDSSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLL-DIED 538

Query: 521 EEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           E KE  L  HSEK+AI FGL++      I +VKNLRVC
Sbjct: 539 EGKESLLNLHSEKMAIAFGLIHINKSAPIHIVKNLRVC 576


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/559 (37%), Positives = 337/559 (60%), Gaps = 6/559 (1%)

Query: 1   MATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLI 60
           + + P+ P+ QS       N    LSLL RC S    K++HA  +K  L  D    + L+
Sbjct: 12  LLSLPNSPL-QSSELNAKFNEQGWLSLLKRCKSMEEFKKVHAHILKLGLFYDSFCGSNLV 70

Query: 61  NFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP 120
             C  +    SME+A  +F +I EP    +NTM RG   S     A+ L+VE+L  G+ P
Sbjct: 71  ASCALS-RWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEP 129

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           D++++P +LKAC+ +   AL+EG Q+H      GL  +++V   LI++Y +C  +E A  
Sbjct: 130 DNFTYPFVLKACSLL--VALKEGVQIHAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGV 187

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLFREL-QERNLKPTDVTMLSALSSCALLG 239
           +FE + E  V S+++II A+A     +E L L  ++ +E   +  +  ++SALS+C  LG
Sbjct: 188 VFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSREGRHRAEESILVSALSACTHLG 247

Query: 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIV 299
           S +LG+ IH  + +   +  V V T+LIDM+ KCG L+  + VF NM+ K+  +++ MI 
Sbjct: 248 SPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIA 307

Query: 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359
             A HG+G +++ +F +M++  ++PD++ ++G+L ACSH GLV EG+  F  M+ ++ I 
Sbjct: 308 GLAIHGRGREALRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRMQFEHMIK 367

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIER 419
           P I+HYGCMVDL+GRAG L EAY  I  +PIK   ++WR+LLS+C  H+NL + +   + 
Sbjct: 368 PTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAADN 427

Query: 420 IFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFS 479
           IF+L+  + GDY++L+N+ ARA +W +V  +R  M ++ +++ PG S +E N  V +F S
Sbjct: 428 IFKLNKHNPGDYLVLANMYARAQKWANVARIRTEMVEKNLVQTPGFSLVEANRNVYKFVS 487

Query: 480 GDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFG 539
            D        +   + ++  +LK  GY PD S V   D++++EK   L++HS+KLAI F 
Sbjct: 488 QDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQVLL-DVDEDEKRQRLKHHSQKLAIAFA 546

Query: 540 LLNTPPGTTIRVVKNLRVC 558
           L+ T  G+ +R+ +NLR+C
Sbjct: 547 LIQTSEGSPVRISRNLRMC 565


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/589 (36%), Positives = 339/589 (57%), Gaps = 47/589 (7%)

Query: 3   TTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINF 62
            T +      PP KL     N+ S+         + QIHA  ++ +L          +  
Sbjct: 16  ATATASFRNPPPEKLAVFIDNSHSV-------DEVLQIHAAILRHNLLIHPRYPVLNLKL 68

Query: 63  CTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDD 122
                +   + H+  LF +  +PD+ LF       S +    +A  L+V+LL+S + P++
Sbjct: 69  HRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNE 128

Query: 123 YSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF 182
           ++F S+LK+C+       + GK +H   +K GL  + YV T L+++YA+  DV +A+++F
Sbjct: 129 FTFSSILKSCST------KSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVF 182

Query: 183 ENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNL--------------------- 221
           + + E  +VS  A+IT YA+      A +LF  + ER++                     
Sbjct: 183 DRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALM 242

Query: 222 -----------KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270
                      KP ++T+++ALS+C+ +G+L+ G+WIH ++    +   VKV TALIDM+
Sbjct: 243 LFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMY 302

Query: 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK-AQVSPDEITF 329
           +KCG L++AV VF++   KD  AW+AMI  YA HG    ++ +F+EM     + P +ITF
Sbjct: 303 SKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITF 362

Query: 330 LGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389
           +G L AC+H GLV+EG   F SM  +YGI P I+HYGC+V LLGRAG+L  AY  I  + 
Sbjct: 363 IGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMN 422

Query: 390 IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDY 449
           +++  +LW ++L SC  H    L K++ E +   + S+ G YV+LSN+ A  G +E V  
Sbjct: 423 MEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIYVLLSNIYALVGDYEGVAK 482

Query: 450 LRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPD 509
           +R LMK++G++K PG S+IE++N V EF +GD  H  S ++   L ++ + +K  GYVP+
Sbjct: 483 VRNLMKEKGIVKEPGISTIEIDNKVHEFRAGDREHLKSKEIYTMLRKMSERIKSHGYVPN 542

Query: 510 TSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           T+ V H D+E+ EKE +L+ HSE+LAI +GL++T PG+ +++ KNLRVC
Sbjct: 543 TNTVLH-DLEETEKERSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVC 590


>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
          Length = 553

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/479 (40%), Positives = 299/479 (62%), Gaps = 12/479 (2%)

Query: 27  LLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPD 86
           +L  C +   LK+IHA  +K  L     ++TK+++ C     T   E+A+LLF  + +P+
Sbjct: 65  ILKDCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHYGET---EYANLLFKGVADPN 121

Query: 87  IVLFNTMARGYSRSKTPIRAIFLFVELLNSG-----LLPDDYSFPSLLKACACVGAEALE 141
             L+N M R Y  +K  + AI ++ ++L +      + PD ++FP ++K+CA  G    +
Sbjct: 122 AFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCA--GLMCYD 179

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE--PCVVSYNAIITA 199
            GKQ+H    K G  SN  V  +L+ +Y +C  ++ A R+FE ++E    + S+ AI++ 
Sbjct: 180 LGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSG 239

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
           YAR     +AL  FR +Q   ++P +++++S L  CA LG+L+LGKWIH Y  K G  + 
Sbjct: 240 YARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRN 299

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           + V  ALI+M+AKCG +D    +FD M  +D  +WS MIV  A HG+  ++I +F+EM K
Sbjct: 300 ICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQK 359

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
           A++ P  ITF+GLL AC+H GL++EG  YF SM+  Y I PG++HYGC+V+LLG +GRLD
Sbjct: 360 AKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLD 419

Query: 380 EAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439
           +A   + ++P K    +W +LLSSC SH NL +A   +E + EL+ +  G+YV+LSNL A
Sbjct: 420 QALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYA 479

Query: 440 RAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELV 498
             G+W+ V  +RKLM+ + + K PGCSSIEV+N+V+EF SGD    +S  + + L  LV
Sbjct: 480 DLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASGDDSKPFSKAICRVLKLLV 538


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/543 (38%), Positives = 329/543 (60%), Gaps = 9/543 (1%)

Query: 19  TNTPNALSLLPRC---TSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
            N    L++LP C   +  R LK++H  +I+   Q D  V      F         +  A
Sbjct: 234 VNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVAN---GFVAAYAKCGMLICA 290

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
             +F  +    +  +N +  G +++  P +A+ L++++  SGL+PD ++  SLL A A +
Sbjct: 291 ERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHL 350

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
             ++L  GK++H F ++ GL  + ++  +L++LY  C +  +AR +F+ + E   VS+NA
Sbjct: 351 --KSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNA 408

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +I+ Y+++  P +AL LFR+L     +P+D+ ++S L +C+   +L LGK  H Y  K  
Sbjct: 409 MISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKAL 468

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
           L + V V  + IDM+AK G + ++ SVFD +  KD  +W+A+I AY  HG G +SI +FE
Sbjct: 469 LMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFE 528

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
            M K    PD  TF+G+L  CSH GLV+EG  YF  M++ +GI P ++HY C++D+LGRA
Sbjct: 529 RMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRA 588

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
           GRLD+A R + E+P +    +W +LLS C +   L + + V E++ EL+  +  +YV LS
Sbjct: 589 GRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLS 648

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           NL A +GRW+DV  +R+++KD G+ K  GCS IE+   V  F +GD +   S ++     
Sbjct: 649 NLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGKVHSFVAGDNLLPQSKEMSMTWR 708

Query: 496 ELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNL 555
           +L K++  +GY P+TS V H D+++E+K   LR HSEKLAI FGLLNT  GTT+R+ KNL
Sbjct: 709 KLEKKMCKIGYKPNTSAVLH-DVDEEKKIEKLRGHSEKLAICFGLLNTTKGTTLRIFKNL 767

Query: 556 RVC 558
           R+C
Sbjct: 768 RIC 770



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 158/308 (51%), Gaps = 9/308 (2%)

Query: 35  RGLKQ-IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM 93
           RGL + IH + IK  L  D+ V   LI           ++ A  +F  +P  ++V +N++
Sbjct: 47  RGLGEVIHGMVIKMGLLLDVFVGNALI---AMYGKFGFVDAAVKVFHYMPVRNLVSWNSI 103

Query: 94  ARGYSRSKTPIRAIFLFVELL--NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAI 151
             G+S +        + VE++    GLLPD  +  ++L  CA      ++ G ++H  A+
Sbjct: 104 ISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCA--REVDVQMGIRIHGLAV 161

Query: 152 KLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALS 211
           KLGL+ ++ V  +L+++Y++C  +  A+ +F+  +    VS+N +I          EA +
Sbjct: 162 KLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFN 221

Query: 212 LFRELQ-ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270
           LFRE+Q + +++  +VT+L+ L +C  +  L   K +H Y  ++G      V    +  +
Sbjct: 222 LFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAY 281

Query: 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           AKCG L  A  VF +M  K   +W+A+I   A +G   K++ ++ +M  + + PD  T  
Sbjct: 282 AKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIG 341

Query: 331 GLLYACSH 338
            LL A +H
Sbjct: 342 SLLLASAH 349



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 132/235 (56%), Gaps = 6/235 (2%)

Query: 106 AIFLFVELL-NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTT 164
           AI +FV+L+ ++    D+++FP ++KAC   G+     G+ +H   IK+GL  +++V   
Sbjct: 14  AIDMFVKLITDTEFNADNFTFPCVIKACT--GSLDRGLGEVIHGMVIKMGLLLDVFVGNA 71

Query: 165 LINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ--ERNLK 222
           LI +Y +   V+AA ++F  +    +VS+N+II+ ++ +    +   +  E+   E  L 
Sbjct: 72  LIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLL 131

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
           P   T+++ L  CA    + +G  IH    K GL + V+VN +L+DM++KCG L +A  +
Sbjct: 132 PDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQML 191

Query: 283 FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM-MKAQVSPDEITFLGLLYAC 336
           FD  + K+  +W+ MI    T G   ++  +F EM M+  +  +E+T L +L AC
Sbjct: 192 FDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPAC 246


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/521 (38%), Positives = 318/521 (61%), Gaps = 6/521 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +Q+H+  +K  +++DL V   L++  ++      +E A + F+ +PE D++ +N +  GY
Sbjct: 352 RQLHSSLMKMDMESDLFVSVGLVDMYSK---CDLLEDARMAFNLLPEKDLIAWNAIISGY 408

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           S+    + A+ LFVE+   G+  +  +  ++LK+ A  G + +   +Q+H  ++K G +S
Sbjct: 409 SQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTA--GLQVVHVCRQVHGLSVKSGFHS 466

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           ++YV  +LI+ Y +CS VE A RIFE  +   +VS+ ++ITAYA+  +  EAL LF E+Q
Sbjct: 467 DIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQ 526

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           +  LKP      S L++CA L + + GK +H +I KYG    +    +L++M+AKCG +D
Sbjct: 527 DMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSID 586

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           DA   F  ++ +   +WSAMI   A HG G +++ +F +M+K  VSP+ IT + +L AC+
Sbjct: 587 DAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACN 646

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H GLV E   YF SM + +G  P  +HY CM+DLLGRAG+++EA   ++++P ++   +W
Sbjct: 647 HAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVW 706

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             LL +   H ++ L ++  E +F L+    G +V+L+N+ A AG+WE+V  +R+LM+D 
Sbjct: 707 GALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDS 766

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
            V K PG S IEV + V  F  GD  H  S ++   LDEL   +   GYVP   +  H D
Sbjct: 767 KVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLH-D 825

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +E  EKE+ L +HSEKLA+ FGL+ TP G  IRV KNLRVC
Sbjct: 826 VEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVC 866



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 192/385 (49%), Gaps = 31/385 (8%)

Query: 7   PPITQSPPPKLCTN-------TPNALS---LLPRCTSFRGLK---QIHAVTIKTHLQNDL 53
           P  ++ P      N       TP ++S   LL +C + + L+   QIHA   K+ L +D 
Sbjct: 32  PQFSEDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDP 91

Query: 54  NVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVEL 113
           ++   LIN  ++        +A  L D   EPD+V ++ +  GY+++     A+  F E+
Sbjct: 92  SIRNHLINLYSK---CRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEM 148

Query: 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
              G+  ++++F S+LKAC+ V  + L  GKQ+H   +  G   +++V  TL+ +YA+C 
Sbjct: 149 HLLGVKCNEFTFSSVLKACSIV--KDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCD 206

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
           +   ++R+F+ I E  VVS+NA+ + Y +     EA+ LF E+    +KP + ++ S ++
Sbjct: 207 EFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVN 266

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
           +C  L     GK IH Y+ K G D       AL+DM+AK G L DA+SVF+ +   D  +
Sbjct: 267 ACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVS 326

Query: 294 WSAMIVAYATHGQGHKSILMFEEM--------MKAQVSPDEITFLGLLYACSHTGLVDEG 345
           W+A+I     H    +++ +  +M        MK  +  D    +GL+   S   L+++ 
Sbjct: 327 WNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDA 386

Query: 346 WNYFYSMRDK-----YGIVPGIKHY 365
              F  + +K       I+ G   Y
Sbjct: 387 RMAFNLLPEKDLIAWNAIISGYSQY 411



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 93/213 (43%), Gaps = 14/213 (6%)

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +I    + S   +  ++   + + N  PT V+    LS C    SL  G  IH +I K G
Sbjct: 27  LIQTVPQFSEDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSG 86

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
           L     +   LI++++KC     A  + D  S  D  +WSA+I  YA +G G  +++ F 
Sbjct: 87  LSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFH 146

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG------CMV 369
           EM    V  +E TF  +L ACS    +  G       +  +G+V      G       +V
Sbjct: 147 EMHLLGVKCNEFTFSSVLKACSIVKDLRIG-------KQVHGVVVVSGFEGDVFVANTLV 199

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
            +  +     ++ R  DE+P ++  + W  L S
Sbjct: 200 VMYAKCDEFLDSKRLFDEIPERNV-VSWNALFS 231


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/546 (37%), Positives = 330/546 (60%), Gaps = 21/546 (3%)

Query: 28  LPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           +  C+S   L   KQIH         +D+ V + LI+  ++      +  A  LFD IPE
Sbjct: 93  IKSCSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSK---CGYLNDARKLFDEIPE 149

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELL-----------NSGLLPDDYSFPSLLKACA 133
            ++V + +M  GY +++    A+FLF E L             G+  D      ++ ACA
Sbjct: 150 RNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACA 209

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
            V  +++ E   +H  A+K G    L V  TL++ YA+C ++  +R++F+ + E  V S+
Sbjct: 210 RVCVKSVTEC--VHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSW 267

Query: 194 NAIITAYARSSRPNEALSLFRELQERN-LKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           N++I  YA++    EA SLF ++ +R  ++   VT+ + L +CA  G+L +GK IH+ + 
Sbjct: 268 NSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVV 327

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           K  L+  + V T+++DM+ KCGR++ A   FD +  K+ ++W+ M+  Y  HG G +++ 
Sbjct: 328 KMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMK 387

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           +F EM++  + P+ ITF+ +L ACSH GL+ EGW++F  M+ ++ + PGI+HY CMVDLL
Sbjct: 388 VFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLL 447

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432
           GRAG L EAY  I E+ +K   I+W +LL +C  H N+ L +    ++F+LD S+ G YV
Sbjct: 448 GRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYV 507

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
           +LSN+ A AGRW+DV+ +R LMK+ G+LK PG S +E    V  F  GD  H     + +
Sbjct: 508 LLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYE 567

Query: 493 ALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVV 552
            LDEL  +L+ VGY+P+ + V + D++ EEK + LR HSEKLA+ FG++N+ PG+ I+++
Sbjct: 568 YLDELNVKLQEVGYMPNVTSVLY-DVDVEEKGMVLRVHSEKLAVAFGIMNSVPGSVIQII 626

Query: 553 KNLRVC 558
           KNLR+C
Sbjct: 627 KNLRIC 632



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 181/357 (50%), Gaps = 25/357 (7%)

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           + +  +  +N++   ++RS   ++A++ F  +    L P+  +FP  +K+C+ +    L 
Sbjct: 46  VDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSL--YDLC 103

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            GKQ+H  A   G  S+++V + LI++Y++C  +  AR++F+ I E  VVS+ ++I+ Y 
Sbjct: 104 AGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYV 163

Query: 202 RSSRPNEALSLFRELQERNLKPTD-----------VTMLSALSSCALLGSLDLGKWIHEY 250
           ++ R  EA+ LF+E    +    D           V +   +S+CA +    + + +H  
Sbjct: 164 QNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGL 223

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310
             K G +  + V   L+D +AKCG +  +  VFD M   D  +W+++I  YA +G   ++
Sbjct: 224 AVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEA 283

Query: 311 ILMFEEMMK-AQVSPDEITFLGLLYACSHTGLVDEG---WNYFYSMRDKYGIVPGIKHYG 366
             +F +M+K  +V  + +T   +L AC+H+G +  G    +    M  +  +V G     
Sbjct: 284 FSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTS--- 340

Query: 367 CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
            +VD+  + GR++ A +  D L  K+    W  +++    H   G  K+ ++  +E+
Sbjct: 341 -IVDMYCKCGRVEMARKAFDRLKRKNVK-SWTVMVAGYGMH---GHGKEAMKVFYEM 392


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/580 (36%), Positives = 329/580 (56%), Gaps = 52/580 (8%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP 85
           S  P C + + LKQ+HA  IKT    D     +L+ F   +     +++A  +F  +  P
Sbjct: 17  SFFP-CKTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVS-DHRDLDYARKIFRSMHRP 74

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELL-NSGLLPDDYSFPSLLKACACVGAEALEEGK 144
           +   +NT+ R  S S  P  A+ +F+E++ +  + P+ ++FPS+ KAC    AE L EG+
Sbjct: 75  NCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACG--RAERLREGR 132

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECS------------------------------- 173
           Q+H  A+K GL+S+ +V + ++ +Y  C                                
Sbjct: 133 QVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGD 192

Query: 174 ---------------DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
                          ++E AR +F+ + +  VVS+N +I  YA+S    EA+ +FRE+Q 
Sbjct: 193 VVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQM 252

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
             + P  VT++S L + + LG+L+LGKW+H Y  +  +     + +ALIDM+AKCG ++ 
Sbjct: 253 AEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEK 312

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A+ VF+ +  ++   WS +I   A HG+   ++  FE+M +A V P ++T++GLL ACSH
Sbjct: 313 ALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSH 372

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
            GLV+EG  +F  M    G+ P I+HYGCMVDLLGRAG L+E+   I  +PIK   ++W+
Sbjct: 373 AGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWK 432

Query: 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458
            LL +C  H N+ + K+V E + EL     G YV LSN+ A  G WE V  +R +MK+  
Sbjct: 433 ALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMD 492

Query: 459 VLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDM 518
           V K PGCS IE++ V+ EF   D  H  S  +   L E+ + L +VGY P+T+ V   +M
Sbjct: 493 VRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRPNTTQV-LTNM 551

Query: 519 EDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           ++E+KE +L YHSEK+AI FGL++T P T +R+ KNLR+C
Sbjct: 552 DEEDKESSLNYHSEKIAIAFGLISTQPQTPLRITKNLRIC 591


>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/566 (37%), Positives = 336/566 (59%), Gaps = 33/566 (5%)

Query: 20  NTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLF 79
           +T   +S+L +C S   L+QIHA  IKT+L N    +++LI FC+ +  +  +++A  +F
Sbjct: 5   STNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVF 64

Query: 80  DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN-----SGLLPDDYSFPSLLKACAC 134
            RI  P+  +F  + +G+S +  P+ ++ L+  +L+     SG+   ++S PS+LKAC  
Sbjct: 65  SRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGV---EFSIPSVLKACGK 121

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           +   A +EG+Q+H   +K  L  + +V  +++ +Y +  ++E ARR+F+ +    VVS+N
Sbjct: 122 L--LAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWN 179

Query: 195 AIITAYARSSRPNEALSLFRELQERNL-------------------KPTDVTMLSALSSC 235
           ++I  Y ++     A  LF E+ ER+L                   +P    ++S LS+ 
Sbjct: 180 SMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKEMLSLGLRPDGPAIVSVLSAI 239

Query: 236 ALLGSLDLGKWIHEYIKKYGLDKYVK-VNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQA 293
           A LG ++ GKW+H Y+    ++     + +ALIDM++KCG +++A  VF ++S + +   
Sbjct: 240 ADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGD 299

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           W++MI   A HG   +++ +F EM +  + P+EITFLGLL  CSH GLV+EG  YF SM 
Sbjct: 300 WNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMH 359

Query: 354 DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413
           +KY IVP I+HYGCM+DL GRAGRL++A   I  +P ++  + W+ +LS+   H ++ + 
Sbjct: 360 EKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIG 419

Query: 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNV 473
           K    R  EL       YV+LSN+ A+AGRW+DV  +R +M+ RGV K+ GCSS+ VN  
Sbjct: 420 KSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGK 479

Query: 474 VREFFSGDGV-HSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSE 532
           V EF  G  +  SYS  +   + E+V  LK+ GY PD + V   D+EDE KE  L  HSE
Sbjct: 480 VHEFLLGKELDSSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLL-DIEDEGKESLLNLHSE 538

Query: 533 KLAITFGLLNTPPGTTIRVVKNLRVC 558
           K+AI FGL++      I +VKNLRVC
Sbjct: 539 KMAIAFGLIHINKSAPIHIVKNLRVC 564


>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
          Length = 978

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/513 (40%), Positives = 313/513 (61%), Gaps = 13/513 (2%)

Query: 54  NVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIR--AIFLFV 111
           ++  KL+NFC  +  + S+ +A L+F RI  P    +N+M RG+S+S +P++  AI  + 
Sbjct: 431 SISEKLLNFCAVS-VSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYN 489

Query: 112 ELLN-SGLLPDDYSFPSLLKACACVGAEALEEGK--QLHCFAIKLGLNSNLYVCTTLINL 168
            +L+ S   PD Y+F  LLKAC     EA EEGK  ++H F I+ G + ++ +CT LI  
Sbjct: 490 HMLSASHARPDTYTFSFLLKACE----EAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRS 545

Query: 169 YAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTM 228
           YA    +E A ++FE +    +VS+N++I+ Y ++    EAL ++ +++  N+     T+
Sbjct: 546 YAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTL 605

Query: 229 LSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG 288
           +S LSSCA +G+L +G  +H +  +  L + + V  ALIDM+AKCG L  A+S+F++M  
Sbjct: 606 VSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPK 665

Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNY 348
           +D   W++MIV Y  HG+G ++I  F  M+ A V P+ ITFLGLL  CSH GLV EG  Y
Sbjct: 666 RDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQY 725

Query: 349 FYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408
           F+ M  ++ + PGIKHYGCMVDL GRAG+L EA   I   P +  P+LWRTLL SC  H 
Sbjct: 726 FHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHR 785

Query: 409 NLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSI 468
           N+ + +  +  + +L     GD V+LS + A A   + V  +RKL++ RG+   PG S I
Sbjct: 786 NVEIGEMAMRNLVQLGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWI 845

Query: 469 EVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGY-VPDTSLVHHGDMEDEEK--EI 525
           EV + V  F   D  H  S ++ + L+E++    +VGY + ++SLV   +   +E   E 
Sbjct: 846 EVGDQVHRFVVDDKSHPDSREIYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWET 905

Query: 526 ALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +  YHSEKLAI +GL  TP GT++ +VKNLRVC
Sbjct: 906 STSYHSEKLAIAYGLARTPEGTSLLIVKNLRVC 938


>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
 gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
 gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
          Length = 604

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/490 (41%), Positives = 312/490 (63%), Gaps = 9/490 (1%)

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIR---AIFLFVELLNSGL-LPDDYSFPSLL 129
           +A  LFD+IPEP    +N++ R  S +         + ++  +L +G  LP+ ++    L
Sbjct: 79  YARNLFDQIPEPTAFCYNSLIRALSSAAGAAPAADTVLVYRRMLRAGSPLPNSFTLAFAL 138

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN-ISEP 188
           KAC+ V   AL EG+QLH  A + GL  + YV T L+NLYA+C +V  AR +F+  + + 
Sbjct: 139 KACSVV--PALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDK 196

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
            + +++A+I  Y+R    NEAL LFRE+Q  ++ P +VTM+S +S+CA  G+LDLG+W+H
Sbjct: 197 NLAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVH 256

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
            +I + G+   ++++TALIDM+AKCG ++ A  VFD M+ +DT+AWSAMIV  A HG   
Sbjct: 257 AFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVE 316

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
            ++ +F  M++ +V P+ +TF+G+L AC+H+GLV+EG  Y+ +M++  GI P +++YGCM
Sbjct: 317 VALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTMQE-LGIKPSMENYGCM 375

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428
           VDL  R+  LDEAY F+  + I    ++WRTLL +  + N   + +   +++ EL+  + 
Sbjct: 376 VDLFCRSSLLDEAYSFVTGMAIPPNSVIWRTLLVASKNSNRFDIVQSASKKLLELEPCNP 435

Query: 429 GDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYST 488
            +YV+LSNL A   +W+ V Y+RK MK+  V  V GCSSIE+N  + +F   D  H    
Sbjct: 436 ENYVLLSNLYASNSQWDRVSYMRKKMKENNVNVVAGCSSIEINGYLHKFVVSDDSHPEIK 495

Query: 489 DLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTT 548
           +++  L E+   +   G+ P T+ V H D+ +EEKE+AL  HSE+LAI +GLL T     
Sbjct: 496 EIRLLLREIADRVVRAGHKPWTAAVLH-DVGEEEKEVALCEHSERLAIAYGLLKTKAPHV 554

Query: 549 IRVVKNLRVC 558
           IRVVKNLR C
Sbjct: 555 IRVVKNLRFC 564


>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
 gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/569 (37%), Positives = 346/569 (60%), Gaps = 25/569 (4%)

Query: 9   ITQSPPPKLCTNTPNA-----LSLLPRCTSFRGLKQIHAVTIKTHLQND---LNVLTKLI 60
           + QSPPP++ T+ P       L  L  C     LKQIHA+++++ L N    L + ++++
Sbjct: 5   VIQSPPPQIVTSKPTNHYNLLLQHLNECKDMSQLKQIHALSLRSTLPNHSTTLFLYSRIL 64

Query: 61  NFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKT---PIRAIFLFVELLN-S 116
           +F     +   + +A+ +FD++  P+  ++N + R  ++S++      AI L+  +L  S
Sbjct: 65  HF----SSLHDLNYAYRVFDQVDNPNSFMWNILIRACAQSQSVHLKREAILLYNTMLQRS 120

Query: 117 GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVE 176
              PD+++FP +LKACA + A  L EGKQ H   +KLG  S++Y+  +LI+ YA C  +E
Sbjct: 121 SPFPDNHTFPFVLKACAYLFA--LFEGKQAHAHLLKLGFQSDVYINNSLIHFYASCGSLE 178

Query: 177 AARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236
           +A+ +F+ + +  +VS+NA+I A+        AL LF + Q++  +P   T+ S +++CA
Sbjct: 179 SAKNVFDKMPQRSLVSWNAMIDAFVLFGEFETALQLFVQFQQQFFEPDGYTIQSVINACA 238

Query: 237 LLGSLDLGKWIHEYI-KKYGLD---KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ 292
            L +L LG W H ++ +  G+     +V VN +L+DM+ KCG LD A  +F+ M   D  
Sbjct: 239 GLCALSLGMWAHAFLLRNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVT 298

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMK-AQVSPDEITFLGLLYACSHTGLVDEGWNYFYS 351
           +W++MI+ +A HG+G  ++  FE M++ ++  P+ ITF+G+L AC+H  +V+EG  YF  
Sbjct: 299 SWNSMILGFAMHGKGELALECFERMIRISRFVPNSITFVGVLSACNHRYMVNEGRKYFDM 358

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN-NL 410
           M ++Y I P ++HYGC+VD+L RAG +DEA   +  +P+K   ++WR+LL SC   N ++
Sbjct: 359 MVNEYKIEPQLEHYGCLVDILARAGLIDEALELVASMPMKPDVVIWRSLLDSCCKKNASV 418

Query: 411 GLAKQVIERIFELDDS-HGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIE 469
            L++ +  +I E +++   G YV+LS + A A RW DV  +RKLM + G+LK PGCS IE
Sbjct: 419 ELSENIARQILESEEADSSGVYVLLSRVYASASRWNDVGLVRKLMTNNGILKEPGCSLIE 478

Query: 470 VNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRY 529
           V+ V  EFF+GD  H  + ++ + L+ + + +   GY PD S     D  +  K  +LR 
Sbjct: 479 VDGVTHEFFAGDTSHPQTKEIYQVLNVVEERIDSTGYKPDYSQAPMVDELNTSKRDSLRL 538

Query: 530 HSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           HSE+LAI  GLLN  PG  IR+ KNLRVC
Sbjct: 539 HSERLAIALGLLNLKPGMPIRIFKNLRVC 567


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/524 (40%), Positives = 315/524 (60%), Gaps = 12/524 (2%)

Query: 38  KQIHAVTIKTH-LQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           K +H+ +IK   L  ++     L++  ++      +  A  +F+R+ E  +V + +M  G
Sbjct: 372 KVLHSYSIKAATLDREVRFNNTLLDMYSK---CGDLNSAIRVFERMDEKTVVSWTSMITG 428

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           Y R      AI LF E+ + G++PD Y+  S+L ACA  G   L+ GK +H +  +  L 
Sbjct: 429 YVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGN--LKSGKIVHDYIRENNLE 486

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
           +N +V   L ++YA+C  ++ A  +F ++ +  V+S+N +I  Y ++S PNEAL+LF E+
Sbjct: 487 TNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEM 546

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK--YGLDKYVKVNTALIDMHAKCG 274
           Q R  KP   T+   L +CA L +LD G+ IH Y  +  Y  DKYV    A++DM+ KCG
Sbjct: 547 Q-RESKPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYV--TNAVVDMYVKCG 603

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
            L  A S+FD +  KD  +W+ MI  Y  HG G ++I  F +M    + PDE++F+ +LY
Sbjct: 604 LLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILY 663

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           ACSH+GL+DEGW  F  M+ +  I P ++HY CMVDLL R G L +A++FI  +PIK   
Sbjct: 664 ACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDA 723

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454
            +W  LL  C  H+++ LA++V ERIFEL+  + G YV+L+N+ A A +WE+V  LRK +
Sbjct: 724 TIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKI 783

Query: 455 KDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVH 514
             RG+ K PGCS IE+   +  F +GD     +  ++  L  L  ++K  GY P T+   
Sbjct: 784 GQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRSKMKEEGYSPKTAYAL 843

Query: 515 HGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             + ++ EKE+AL  HSEKLA+ FG+LN PPG TIRV KNLRVC
Sbjct: 844 L-NADEREKEVALCGHSEKLAMAFGMLNLPPGKTIRVTKNLRVC 886



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 174/331 (52%), Gaps = 5/331 (1%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           ++   ++FD++ E  I L+N M   YS S     +I LF ++L  G+ P+ Y+F S+LK 
Sbjct: 201 LKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKC 260

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
            A V    +EEG+Q+H    KLG NS   V  +LI+ Y     V  A+++F+ +++  V+
Sbjct: 261 FAAVA--RVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVI 318

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY- 250
           S+N++I+ Y ++   +  + +F ++    +     TM++   +CA +G+L LGK +H Y 
Sbjct: 319 SWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYS 378

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310
           IK   LD+ V+ N  L+DM++KCG L+ A+ VF+ M  K   +W++MI  Y   G    +
Sbjct: 379 IKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGA 438

Query: 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370
           I +F+EM    V PD      +L AC+  G +  G      +R+   +         + D
Sbjct: 439 IKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIREN-NLETNSFVSNALTD 497

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
           +  + G + +A+     +  K   I W T++
Sbjct: 498 MYAKCGSMKDAHDVFSHMK-KKDVISWNTMI 527



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 143/280 (51%), Gaps = 5/280 (1%)

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           ++ S+L+ CA    +++ +G+++       G+  +  +   L+ +Y +C D++  R +F+
Sbjct: 152 AYCSILQLCA--ERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFD 209

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
            +SE  +  +N +I+ Y+ S    E+++LF+++ E  +KP   T  S L   A +  ++ 
Sbjct: 210 KLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEE 269

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303
           G+ +H  I K G + Y  V  +LI  +    ++  A  +FD ++ +D  +W++MI  Y  
Sbjct: 270 GRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVK 329

Query: 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP-GI 362
           +G   + I +F +M+   V  D  T + +  AC++ G +  G    +S   K   +   +
Sbjct: 330 NGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLG-KVLHSYSIKAATLDREV 388

Query: 363 KHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
           +    ++D+  + G L+ A R  + +  K T + W ++++
Sbjct: 389 RFNNTLLDMYSKCGDLNSAIRVFERMDEK-TVVSWTSMIT 427


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/521 (38%), Positives = 317/521 (60%), Gaps = 6/521 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +++H    K  L+ +  V T L+    +      +  A ++FD++PE ++V +  +  GY
Sbjct: 217 QKVHMEIAKAGLELEPRVGTSLVGMYAK---CGDISKAQVIFDKLPEKNVVTWTLLIAGY 273

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           ++      A+ L  ++  + + P+  ++ S+L+ C      ALE GK++H + I+ G   
Sbjct: 274 AQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTT--PLALEHGKKVHRYIIQSGYGR 331

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            ++V   LI +Y +C  ++ AR++F ++    VV++ A++T YA+    +EA+ LFR +Q
Sbjct: 332 EIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQ 391

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           ++ +KP  +T  SAL+SC+    L  GK IH+ +   G    V + +AL+ M+AKCG +D
Sbjct: 392 QQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMD 451

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           DA  VF+ MS ++  AW+AMI   A HG+  +++  FE+M K  + PD++TF  +L AC+
Sbjct: 452 DARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACT 511

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H GLV+EG  +F SM   YGI P ++HY C VDLLGRAG L+EA   I  +P +  P +W
Sbjct: 512 HVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVW 571

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             LLS+C  H+++   ++  E + +LD    G YV LSN+ A AGR+ED + +R++M+ R
Sbjct: 572 GALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKR 631

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
            V+K PG S IEV+  V  F   D  H  + ++   L +L +++K  GYVPDT  V H D
Sbjct: 632 DVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELGKLTEQIKEQGYVPDTRFVLH-D 690

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +++E+K   L  HSE+LAIT+GL+ TPPGT IR+VKNLRVC
Sbjct: 691 VDEEQKVQTLCSHSERLAITYGLMKTPPGTPIRIVKNLRVC 731



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 107/398 (26%), Positives = 194/398 (48%), Gaps = 10/398 (2%)

Query: 26  SLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
            LL  C   R L+Q   +HA  +K+ +Q +  +   L++   +     S+  A  +FD I
Sbjct: 101 GLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAK---CGSLTDARRVFDGI 157

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
            + +IV +  M   +      + A   +  +  +G  PD  +F SLL A      E L+ 
Sbjct: 158 RDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAF--TNPELLQV 215

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G+++H    K GL     V T+L+ +YA+C D+  A+ IF+ + E  VV++  +I  YA+
Sbjct: 216 GQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQ 275

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
             + + AL L  ++Q+  + P  +T  S L  C    +L+ GK +H YI + G  + + V
Sbjct: 276 QGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWV 335

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
             ALI M+ KCG L +A  +F ++  +D   W+AM+  YA  G   ++I +F  M +  +
Sbjct: 336 VNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGI 395

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            PD++TF   L +CS    + EG    +      G    +     +V +  + G +D+A 
Sbjct: 396 KPDKMTFTSALTSCSSPAFLQEG-KSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDAR 454

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
              +++  ++  + W  +++ C+ H     A +  E++
Sbjct: 455 LVFNQMSERNV-VAWTAMITGCAQHGRCREALEYFEQM 491



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 190/386 (49%), Gaps = 50/386 (12%)

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
           F  LL+ CA +   +LE+G+++H   +K G+  N Y+  TL+++YA+C  +  ARR+F+ 
Sbjct: 99  FRGLLQECARL--RSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDG 156

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
           I +  +VS+ A+I A+   ++  EA   +  ++    KP  VT +S L++      L +G
Sbjct: 157 IRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVG 216

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
           + +H  I K GL+   +V T+L+ M+AKCG +  A  +FD +  K+   W+ +I  YA  
Sbjct: 217 QKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQ 276

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACS-----------HTGLVDEGW------- 346
           GQ   ++ + E+M +A+V+P++IT+  +L  C+           H  ++  G+       
Sbjct: 277 GQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVV 336

Query: 347 NYFYSM----------RDKYGIVP--GIKHYGCMVDLLGRAGRLDEA---YRFIDELPIK 391
           N   +M          R  +G +P   +  +  MV    + G  DEA   +R + +  IK
Sbjct: 337 NALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIK 396

Query: 392 STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG---DYVILSNLC---ARAGRWE 445
              + + + L+SCSS   L   K + +++      H G   D  + S L    A+ G  +
Sbjct: 397 PDKMTFTSALTSCSSPAFLQEGKSIHQQLV-----HAGYSLDVYLQSALVSMYAKCGSMD 451

Query: 446 DVDYLRKLMKDRGVLK----VPGCSS 467
           D   +   M +R V+     + GC+ 
Sbjct: 452 DARLVFNQMSERNVVAWTAMITGCAQ 477



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 108/224 (48%), Gaps = 2/224 (0%)

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           ++   +  R  EAL +   +  +  +         L  CA L SL+ G+ +H  I K G+
Sbjct: 68  VSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 127

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
                +   L+ M+AKCG L DA  VFD +  ++  +W+AMI A+    Q  ++   +E 
Sbjct: 128 QPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYET 187

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M  A   PD++TF+ LL A ++  L+  G      +  K G+    +    +V +  + G
Sbjct: 188 MKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIA-KAGLELEPRVGTSLVGMYAKCG 246

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
            + +A    D+LP K+  + W  L++  +    + +A +++E++
Sbjct: 247 DISKAQVIFDKLPEKNV-VTWTLLIAGYAQQGQVDVALELLEKM 289


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/539 (39%), Positives = 334/539 (61%), Gaps = 13/539 (2%)

Query: 26  SLLPRCT--SFRGLKQIHAVTIKTHLQNDLNV---LTKLINFCTQNPTTSSMEHAHLLFD 80
           S L +CT  S    KQ+HA    T  Q  L +    +KL+       +  ++  A L F 
Sbjct: 7   SFLSKCTTLSLPHTKQLHAHLFTTG-QFRLPISPARSKLLELYAL--SLGNLSFAILTFS 63

Query: 81  RIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEAL 140
           +I  P    +N + RG+ +S  P  A   +  +++     D  +   +LKACA V A   
Sbjct: 64  QIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLARL- 122

Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY 200
            E  Q+H   ++ G  ++  + TTL+++YA+  ++++A ++F+ + +  + S+NA+I+ +
Sbjct: 123 -ESIQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGF 181

Query: 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
           A+ S+P EALSLF+ ++    KP ++++L ALS+CA LG    G+ IH YIK    D   
Sbjct: 182 AQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNA 241

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           +V   +IDM+AKCG +D A  VF++MS  KD   W+ MI+A+A HG+G K++ +FE+M +
Sbjct: 242 QVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQ 301

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
           + VSPD++++L +L AC+H GLV+EG+  F SM +  G+ P +KHYG +VDLLGRAGRL 
Sbjct: 302 SGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSM-ENCGVKPNVKHYGSVVDLLGRAGRLH 360

Query: 380 EAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439
           EAY  ++ +P     +LW+TLL +  +H N+ +A+ V  ++ E+  +H GD+V+LSN+ A
Sbjct: 361 EAYDIVNSMPTVPDIVLWQTLLGASRTHRNVEIAETVSRKLVEMGSNHCGDFVLLSNVYA 420

Query: 440 RAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVK 499
              RW DV  +R+ MK+R V KVPG S IE N V+ +F++ D  H    ++   LDE+  
Sbjct: 421 ARERWADVGRVREAMKNRDVKKVPGLSYIEGNGVIHKFYNADKSHESWREIYAKLDEIRF 480

Query: 500 ELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +K  GYV +TS V H D+ +E+KE  L +HSEKLA+ FGL++T  GT I+V+KNLR+C
Sbjct: 481 RVKEYGYVAETSFVLH-DIGEEDKENVLGHHSEKLAVAFGLISTSEGTPIQVIKNLRIC 538


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/559 (37%), Positives = 322/559 (57%), Gaps = 44/559 (7%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +Q HA  +   LQ +  +  K++       ++  ++ A ++FDRI  P  +L+N++ R Y
Sbjct: 97  QQAHAQIVLHGLQPNAFLAAKMV---AMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAY 153

Query: 98  SR---SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
           +R          +  +  +   GLL D+++ P +LK+CA +    +  G+ +H   +++G
Sbjct: 154 TRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCM--GRCVHGQGLRVG 211

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           L  + YV  +LI++Y +C  +  AR++F+ +    + S+NA+I  Y +      A  LF 
Sbjct: 212 LEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFE 271

Query: 215 ELQERN---------------------------------LKPTDVTMLSALSSCALLGSL 241
            ++ RN                                 +KP  VT++S L +CA   +L
Sbjct: 272 RMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAAL 331

Query: 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS--GKDTQAWSAMIV 299
           + G+ IH++    GL     V TAL  M+AKC  L +A   FD ++  GK+  AW+ MI 
Sbjct: 332 ERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMIT 391

Query: 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359
           AYA+HG G +++ +FE M++A V PD +TF+GLL  CSH+GL+D G N+F  M   + + 
Sbjct: 392 AYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVE 451

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIER 419
           P ++HY C+VDLLGRAGRL EA   I ++P+++ P +W  LL++C SH NL +A+    R
Sbjct: 452 PRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARR 511

Query: 420 IFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFS 479
           +F L+  + G+YV+LSNL A AG WE+V  LR L+K +G+ K PGCS IE+N     F  
Sbjct: 512 LFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMG 571

Query: 480 GDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFG 539
            D  H  + ++ K L+ L +++KM GY+PDTS V H D+ +EEKE  L  HSEKLAI FG
Sbjct: 572 ADKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLH-DISEEEKEYNLTTHSEKLAIAFG 630

Query: 540 LLNTPPGTTIRVVKNLRVC 558
           LLNT PG  +RV KNLR+C
Sbjct: 631 LLNTRPGVVLRVTKNLRIC 649


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/475 (40%), Positives = 306/475 (64%), Gaps = 13/475 (2%)

Query: 89  LFNTMARGYSRSKTPIRAIFLFVELLNSGLLP-DDYSFPSLLKACACVGAEALEEGKQLH 147
           ++NTM RGYSRS  P  AI L++ ++  G+ P ++++FP LL +CA +   +LE G ++H
Sbjct: 1   MWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARL--SSLEPGHEVH 58

Query: 148 CFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPN 207
              IK G  S+L+V   LI+LY+   ++  AR +F+      +VSYN +I  YA  ++P 
Sbjct: 59  SHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPE 118

Query: 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI-HEYIKKYGLDKYVKVNTAL 266
            AL LF E+Q  +    +VT+++ LS+CA LG+ DLGK + H+YI+    ++   +  A+
Sbjct: 119 SALCLFGEMQNSD----EVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAV 174

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQ---AWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
           +DM+AKCG +D A+ +F  + GK+ +    +++MI   A HG G  +I +F E++   + 
Sbjct: 175 MDMYAKCGSIDSALEIFRRV-GKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLK 233

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
           PDE+TF+G+L AC H+GL++EG   F SM + YGI P ++HYGCMVDLLGR G L+EAY 
Sbjct: 234 PDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYD 293

Query: 384 FIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443
            + ++P ++  ++WR LLS+C +H N+ + +   +++ E++  HG  YV+LSN+ A A +
Sbjct: 294 LVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQ 353

Query: 444 WEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKM 503
           WE+   +RK+M+D G+ K PG S IE+   +  F + D  H    +++  L ++   LK 
Sbjct: 354 WEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKS 413

Query: 504 VGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            GYVP+T+ V   D+++EEKE  + YHSEKLA+ FGL+   P  TIR+VKNLR+C
Sbjct: 414 AGYVPNTAQVMF-DIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRIC 467



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 152/299 (50%), Gaps = 16/299 (5%)

Query: 12  SPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSS 71
           +PP       P  L+   R +S     ++H+  IK   ++DL V   LI+  +      +
Sbjct: 31  APPNNF--TFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYS---VFGN 85

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +  A  LFD     D+V +NTM +GY+    P  A+ LF E+ NS    D+ +  ++L A
Sbjct: 86  LNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNS----DEVTLVAVLSA 141

Query: 132 CACVGAEALEEGKQLHCFAIKLGL-NSNLYVCTTLINLYAECSDVEAARRIFENISEPCV 190
           CA +G  A + GK+L+   I+ G+ N N  +   ++++YA+C  +++A  IF  + +   
Sbjct: 142 CARLG--AFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMK 199

Query: 191 VS--YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
               +N++I   A+      A+++FREL    LKP +VT +  L +C   G ++ GK + 
Sbjct: 200 TGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLF 259

Query: 249 EYI-KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHG 305
           E +   YG+   ++    ++D+  + G L++A  +   M  + ++  W A++ A  THG
Sbjct: 260 ESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHG 318


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/530 (38%), Positives = 324/530 (61%), Gaps = 22/530 (4%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTS-------SMEHAHLLFDRIPEPDIVL 89
            KQ+HA  +K   +N         +FC  N   +       SM++A  +F +I +P    
Sbjct: 4   FKQVHAQVLK--WEN---------SFCASNLVATCALSDWGSMDYACSIFRQIDQPGTFE 52

Query: 90  FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCF 149
           FNTM RGY        A+FL+ E+L  G+  D++++P+L KACA +   ++EEG Q+H +
Sbjct: 53  FNTMIRGYVNVMNMENALFLYYEMLERGVESDNFTYPALFKACASL--RSIEEGMQIHGY 110

Query: 150 AIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEA 209
             K GL  +L+V  +LIN+Y +C  +E +  +FE++    V S++AII A+A     +E 
Sbjct: 111 IFKRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSEC 170

Query: 210 LSLFREL-QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALID 268
           LS+F E+ +E + +P +  ++S LS+C  LG+LDLG+  H  + +   +  V V T+LID
Sbjct: 171 LSVFGEMSREGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLID 230

Query: 269 MHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT 328
           M+ KCG ++  +S+F  M  K+  ++S MI   A HG+G +++ +F +M++  + PD++ 
Sbjct: 231 MYVKCGCIEKGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVV 290

Query: 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388
           +LG+L AC+H GLVDEG   F  M+ ++GI P I+HYGC+V L+GRAG L++A   I  +
Sbjct: 291 YLGVLSACNHAGLVDEGLQCFNRMKLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSM 350

Query: 389 PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVD 448
           PIK   ++WR LLS+C  H+NL + +   + + EL+ S+ GDYV+LSN+ ARA RWEDV 
Sbjct: 351 PIKPNEVVWRGLLSACKFHHNLEIGEIAAKSLGELNSSNPGDYVVLSNMYARAKRWEDVA 410

Query: 449 YLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVP 508
            +R  M  +G  + PG S ++V   + +F S D  H     + + + ++  +LK  GY P
Sbjct: 411 KIRTEMARKGFTQTPGFSLVQVERKIYKFVSQDMSHPQCKGMYEMIHQMEWQLKFEGYSP 470

Query: 509 DTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           DTS V   D+++EEK   L+ HS+KLA+ F L++T  G  IR+ +NLR+C
Sbjct: 471 DTSQVLF-DVDEEEKRQRLKAHSQKLAMAFALIHTSQGAPIRIARNLRMC 519


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/487 (38%), Positives = 302/487 (62%), Gaps = 8/487 (1%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +  AH LFD++P+ +++ + TM   YS+ K   +A+ L V +L   + P+ Y++ S+L++
Sbjct: 112 LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRS 171

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C       + + + LHC  IK GL S+++V + LI+++A+  + E A  +F+ +     +
Sbjct: 172 C-----NGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAI 226

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
            +N+II  +A++SR + AL LF+ ++         T+ S L +C  L  L+LG   H +I
Sbjct: 227 VWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI 286

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            KY  D+ + +N AL+DM+ KCG L+DA+ VF+ M  +D   WS MI   A +G   +++
Sbjct: 287 VKY--DQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEAL 344

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +FE M  +   P+ IT +G+L+ACSH GL+++GW YF SM+  YGI P  +HYGCM+DL
Sbjct: 345 KLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDL 404

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
           LG+AG+LD+A + ++E+  +   + WRTLL +C    N+ LA+   +++  LD    G Y
Sbjct: 405 LGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTY 464

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
            +LSN+ A + +W+ V+ +R  M+DRG+ K PGCS IEVN  +  F  GD  H    ++ 
Sbjct: 465 TLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVS 524

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
           K L++L+  L  +GYVP+T+ V   D+E E+ E +LR+HSEKLA+ FGL+  P    IR+
Sbjct: 525 KKLNQLIHRLTGIGYVPETNFVLQ-DLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRI 583

Query: 552 VKNLRVC 558
            KNLR+C
Sbjct: 584 RKNLRIC 590



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 180/360 (50%), Gaps = 26/360 (7%)

Query: 105 RAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL-GLNSNLYVCT 163
           RA+     L + GL  D  ++  L+K C  +   A+ EG  L C  +   G    +++  
Sbjct: 44  RAMKAMDSLQSHGLWADSATYSELIKCC--ISNRAVHEG-NLICRHLYFNGHRPMMFLVN 100

Query: 164 TLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKP 223
            LIN+Y + + +  A ++F+ + +  V+S+  +I+AY++     +AL L   +   N++P
Sbjct: 101 VLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRP 160

Query: 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVF 283
              T  S L SC  +  + +   +H  I K GL+  V V +ALID+ AK G  +DA+SVF
Sbjct: 161 NVYTYSSVLRSCNGMSDVRM---LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVF 217

Query: 284 DNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVD 343
           D M   D   W+++I  +A + +   ++ +F+ M +A    ++ T   +L AC+   L++
Sbjct: 218 DEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLE 277

Query: 344 EGWNYFYSMRDKYGIVPGIKHY---GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400
            G      M+    IV   +       +VD+  + G L++A R  +++  +   I W T+
Sbjct: 278 LG------MQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDV-ITWSTM 330

Query: 401 LSSCSSHNNLGLAKQVIERIFELDDSHGG--DYVILSNL---CARAGRWEDVDYLRKLMK 455
           +S  + +   G +++ + ++FE   S G   +Y+ +  +   C+ AG  ED  Y  + MK
Sbjct: 331 ISGLAQN---GYSQEAL-KLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMK 386



 Score = 40.4 bits (93), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 96/225 (42%), Gaps = 45/225 (20%)

Query: 26  SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDR 81
           S+L  CT    L+   Q H   +K     DL +   L++ +C       S+E A  +F++
Sbjct: 265 SVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCK----CGSLEDALRVFNQ 318

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           + E D++ ++TM  G +++     A+ LF  + +SG  P+  +   +L AC+  G   LE
Sbjct: 319 MKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAG--LLE 376

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           +G                Y   ++  LY                 +P    Y  +I    
Sbjct: 377 DG---------------WYYFRSMKKLYG---------------IDPVREHYGCMIDLLG 406

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW 246
           ++ + ++A+ L  E++    +P  VT  + L +C +  ++ L ++
Sbjct: 407 KAGKLDDAVKLLNEME---CEPDAVTWRTLLGACRVQRNMVLAEY 448


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/487 (38%), Positives = 302/487 (62%), Gaps = 8/487 (1%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +  AH LFD++P+ +++ + TM   YS+ K   +A+ L V +L   + P+ Y++ S+L++
Sbjct: 112 LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRS 171

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C       + + + LHC  IK GL S+++V + LI+++A+  + E A  +F+ +     +
Sbjct: 172 C-----NGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAI 226

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
            +N+II  +A++SR + AL LF+ ++         T+ S L +C  L  L+LG   H +I
Sbjct: 227 VWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI 286

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            KY  D+ + +N AL+DM+ KCG L+DA+ VF+ M  +D   WS MI   A +G   +++
Sbjct: 287 VKY--DQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEAL 344

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +FE M  +   P+ IT +G+L+ACSH GL+++GW YF SM+  YGI P  +HYGCM+DL
Sbjct: 345 KLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDL 404

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
           LG+AG+LD+A + ++E+  +   + WRTLL +C    N+ LA+   +++  LD    G Y
Sbjct: 405 LGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTY 464

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
            +LSN+ A + +W+ V+ +R  M+DRG+ K PGCS IEVN  +  F  GD  H    ++ 
Sbjct: 465 TLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVS 524

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
           K L++L+  L  +GYVP+T+ V   D+E E+ E +LR+HSEKLA+ FGL+  P    IR+
Sbjct: 525 KKLNQLIHRLTGIGYVPETNFVLQ-DLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRI 583

Query: 552 VKNLRVC 558
            KNLR+C
Sbjct: 584 RKNLRIC 590



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 180/360 (50%), Gaps = 26/360 (7%)

Query: 105 RAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL-GLNSNLYVCT 163
           RA+     L + GL  D  ++  L+K C  +   A+ EG  L C  +   G    +++  
Sbjct: 44  RAMKAMDSLQSHGLWADSATYSELIKCC--ISNRAVHEG-NLICRHLYFNGHRPMMFLVN 100

Query: 164 TLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKP 223
            LIN+Y + + +  A ++F+ + +  V+S+  +I+AY++     +AL L   +   N++P
Sbjct: 101 VLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRP 160

Query: 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVF 283
              T  S L SC  +  +   + +H  I K GL+  V V +ALID+ AK G  +DA+SVF
Sbjct: 161 NVYTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVF 217

Query: 284 DNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVD 343
           D M   D   W+++I  +A + +   ++ +F+ M +A    ++ T   +L AC+   L++
Sbjct: 218 DEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLE 277

Query: 344 EGWNYFYSMRDKYGIVPGIKHY---GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400
            G      M+    IV   +       +VD+  + G L++A R  +++  +   I W T+
Sbjct: 278 LG------MQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDV-ITWSTM 330

Query: 401 LSSCSSHNNLGLAKQVIERIFELDDSHGG--DYVILSNL---CARAGRWEDVDYLRKLMK 455
           +S  + +   G +++ + ++FE   S G   +Y+ +  +   C+ AG  ED  Y  + MK
Sbjct: 331 ISGLAQN---GYSQEAL-KLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMK 386



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 96/225 (42%), Gaps = 45/225 (20%)

Query: 26  SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDR 81
           S+L  CT    L+   Q H   +K     DL +   L++ +C       S+E A  +F++
Sbjct: 265 SVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCK----CGSLEDALRVFNQ 318

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           + E D++ ++TM  G +++     A+ LF  + +SG  P+  +   +L AC+  G   LE
Sbjct: 319 MKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAG--LLE 376

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           +G                Y   ++  LY                 +P    Y  +I    
Sbjct: 377 DG---------------WYYFRSMKKLYG---------------IDPVREHYGCMIDLLG 406

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW 246
           ++ + ++A+ L  E++    +P  VT  + L +C +  ++ L ++
Sbjct: 407 KAGKLDDAVKLLNEME---CEPDAVTWRTLLGACRVQRNMVLAEY 448


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/547 (38%), Positives = 319/547 (58%), Gaps = 10/547 (1%)

Query: 16  KLCTNTPNALSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSM 72
           K+  N    +S+LP C     LK    IH  T+K  + +DL+  T L++   +    ++ 
Sbjct: 425 KMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTA- 483

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
             A   F+R+   DIV +N++  GY++   P  AI +F +L  S + PD  +   ++ AC
Sbjct: 484 --ALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPAC 541

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS-EPCVV 191
           A +    L++G  +H   +KLG  S+ +V   LI++YA+C  + +A  +F         V
Sbjct: 542 ALL--NDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEV 599

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           ++N II AY ++    EA+S F +++  N  P  VT +S L + A L +   G   H  I
Sbjct: 600 TWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACI 659

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            + G      V  +LIDM+AKCG+LD +  +F+ M  KDT +W+AM+  YA HG G ++I
Sbjct: 660 IQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAI 719

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +F  M ++QV  D ++F+ +L AC H GLV+EG   F+SM DKY I P ++HY CMVDL
Sbjct: 720 ALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDL 779

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
           LGRAG  DE   FI  +P++    +W  LL SC  H+N+ L +  ++ + +L+  +   +
Sbjct: 780 LGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHF 839

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           V+LS++ A++GRW D    R  M D G+ K PGCS +E+ N V  F  GD  H     + 
Sbjct: 840 VVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMH 899

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
              + L+++++ +GYVPD S V   ++E+E+KE+ L  HSE+LAITF LLNTPPG+TI++
Sbjct: 900 LLWNTLLEKMEKIGYVPDRSCVLQ-NVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQI 958

Query: 552 VKNLRVC 558
           VKNLRVC
Sbjct: 959 VKNLRVC 965



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 195/369 (52%), Gaps = 8/369 (2%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +FD++ + D V + TM  GY+ +   +  + LF ++    +  +  S  S   A A 
Sbjct: 282 ARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAA- 340

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
                LE+GK++H  A++  ++S++ V T L+ +YA+C + E A+++F  +    +V+++
Sbjct: 341 -ETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWS 399

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           AII A  ++  P EALSLF+E+Q + +KP  VT++S L +CA L  L LGK IH +  K 
Sbjct: 400 AIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKA 459

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
            +D  +   TAL+ M+AKCG    A++ F+ MS +D   W+++I  YA  G  + +I MF
Sbjct: 460 DMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMF 519

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
            ++  + ++PD  T +G++ AC+    +D+G    + +  K G          ++D+  +
Sbjct: 520 YKLRLSAINPDAGTMVGVVPACALLNDLDQG-TCIHGLIVKLGFESDCHVKNALIDMYAK 578

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE--LDDSHGGDYV 432
            G L  A    ++       + W  ++   +++   G AK+ I    +  L++ H     
Sbjct: 579 CGSLPSAEFLFNKTDFTKDEVTWNVII---AAYMQNGHAKEAISSFHQMRLENFHPNSVT 635

Query: 433 ILSNLCARA 441
            +S L A A
Sbjct: 636 FVSVLPAAA 644



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 178/327 (54%), Gaps = 8/327 (2%)

Query: 19  TNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLL 78
           TN  +   LL  C     L QIHA  I +  ++  + +T LIN  +        + A  +
Sbjct: 30  TNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHH-HSITHLINLYS---LFHKCDLARSV 85

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
           FD  P P  +L+N+M R Y+RSK    A+ ++  ++  GL PD Y+F  +LK  AC GA 
Sbjct: 86  FDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLK--ACTGAL 143

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
            L+EG   H    + GL  ++++   L+++Y++  D++ AR +F+ + +  VV++NA+I 
Sbjct: 144 NLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIA 203

Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
             ++S  P EA+  FR +Q   ++P+ V++L+       L +++L + IH Y+  +  D 
Sbjct: 204 GLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYV--FRRDF 261

Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
              V+  LID+++KCG +D A  VFD M  +D  +W  M+  YA +G   + + +F++M 
Sbjct: 262 SSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMK 321

Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEG 345
              V  ++++ +    A + T  +++G
Sbjct: 322 LGNVRINKVSAVSAFLAAAETIDLEKG 348



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 166/326 (50%), Gaps = 18/326 (5%)

Query: 27  LLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           +L  CT    L++    H    +  L+ D+ +   L++  ++      ++ A  +FD++P
Sbjct: 135 VLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSK---MGDLKRAREVFDKMP 191

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYS----FPSLLKACACVGAEA 139
           + D+V +N M  G S+S+ P  A+  F  +   G+ P   S    FP + K         
Sbjct: 192 KRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKL------SN 245

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
           +E  + +H +  +   +S   V   LI+LY++C DV+ ARR+F+ + +   VS+  ++  
Sbjct: 246 IELCRSIHGYVFRRDFSSA--VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAG 303

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
           YA +    E L LF +++  N++   V+ +SA  + A    L+ GK IH    +  +D  
Sbjct: 304 YAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSD 363

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           + V T L+ M+AKCG  + A  +F  + G+D  AWSA+I A    G   +++ +F+EM  
Sbjct: 364 ILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQN 423

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEG 345
            ++ P+ +T + +L AC+   L+  G
Sbjct: 424 QKMKPNRVTLMSILPACADLSLLKLG 449



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 144/308 (46%), Gaps = 19/308 (6%)

Query: 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
           L+S    +   +P LL +C     + L    Q+H   I  G   + +  T LINLY+   
Sbjct: 24  LSSSTYTNYLHYPRLLSSC-----KHLNPLLQIHAQIIVSGFKHH-HSITHLINLYSLFH 77

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
             + AR +F++   P  + +N++I AY RS + NEAL ++  + E+ L+P   T    L 
Sbjct: 78  KCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLK 137

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
           +C    +L  G W H  I + GL++ V +   L+DM++K G L  A  VFD M  +D  A
Sbjct: 138 ACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVA 197

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL---LYACSHTGLVDEGWNYFY 350
           W+AMI   +      +++  F  M    V P  ++ L L   +   S+  L      Y +
Sbjct: 198 WNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVF 257

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
                  +  G      ++DL  + G +D A R  D++ +    + W T+++   +HN  
Sbjct: 258 RRDFSSAVSNG------LIDLYSKCGDVDVARRVFDQM-VDQDDVSWGTMMAG-YAHN-- 307

Query: 411 GLAKQVIE 418
           G   +V+E
Sbjct: 308 GCFVEVLE 315


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/568 (37%), Positives = 327/568 (57%), Gaps = 40/568 (7%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLI-NFCTQNPTTSSMEHAHLLFDRIP 83
           ++L+    + + LKQIH   +   L N+  +L + + +   +NPT  ++ +++ + D+  
Sbjct: 13  IALIDSFITLKELKQIHTQLVINGLLNNRELLGQFVASIAVRNPT--NLLYSNQILDQCA 70

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSG--LLPDDYSFPSLLKACACVGAEALE 141
           +P +   N+M R YS+S TP ++   + ++L S   + PD+Y+F  L++ CA     A E
Sbjct: 71  KPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCA---QSACE 127

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAE------------------------------ 171
            G  +H   IK G   + +V + LI +YAE                              
Sbjct: 128 AGPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACA 187

Query: 172 -CSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLS 230
            C D+  AR +F+++ +   VS+NA+I  YA+  +  EAL+LF+ +Q   +K  +V+M+S
Sbjct: 188 KCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMIS 247

Query: 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290
            +++C  LG+LD GKW H YI+K  +   V + TAL+DM+ KCG +D A+ VF  M+ K+
Sbjct: 248 VVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKN 307

Query: 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350
              WS  I   A +G G K + +F  M    ++P+EITF+ +L  CS  G VDEG ++F 
Sbjct: 308 VYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFD 367

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
           SM+  +GI P ++HYGCMVDL GRAGRL+EA  FI+ +P+K     W  LL++C  + N+
Sbjct: 368 SMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNM 427

Query: 411 GLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEV 470
            L +    ++ E++  + G YV LSN+ A  G W+ V  +R+ MK  G+ K+PGCS +EV
Sbjct: 428 ELGEFASRKLIEVEGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEV 487

Query: 471 NNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYH 530
           N  V EFFSGD  H     ++    E+ K LK+ GYV  T+ V   D+E+EEKE AL  H
Sbjct: 488 NGEVHEFFSGDKSHPSYDVIETMWGEISKRLKLAGYVASTNSVLF-DIEEEEKEDALCKH 546

Query: 531 SEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           SEK+AI FGL +   G  IR+VKNLR+C
Sbjct: 547 SEKMAIAFGLFSLKEGLPIRIVKNLRIC 574


>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
          Length = 576

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/531 (38%), Positives = 308/531 (58%), Gaps = 40/531 (7%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           LSLL +C++ + L Q H   +   L  D  +L++ I  C+   +     ++H +F     
Sbjct: 45  LSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACS---SLGFSHYSHSIFTHKTR 101

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
           PDI L+NT+ +  S  +    AI L+  +L S L  D YS P +LK  A V   A+  G+
Sbjct: 102 PDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLK--AVVRLLAIHVGR 159

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAEC-------------------------------S 173
           Q+HC AI  GL S+++V T LI +Y+ C                                
Sbjct: 160 QIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVG 219

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
           DV+ AR +FE + E  V+S+ A+I  YA+  RPNEA+++FR +Q   ++P ++ ML+ALS
Sbjct: 220 DVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALS 279

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
           +CA LG+L+LG+WIH YI K+GL K V +N ALIDM+AKCG+++ A+ VF NM  K    
Sbjct: 280 ACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVIT 339

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           W++MI   A HG G +++ MF  M + ++ P+EITF+ +L AC H GLV+ G  YF  M 
Sbjct: 340 WTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMG 399

Query: 354 DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413
            KYGI P I+HYGCM+DLLGRAG L EA   +  +P ++   +W +LL++   H +  L 
Sbjct: 400 TKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELG 459

Query: 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNV 473
           KQ ++ + +++  + G+Y +LSN+ A   +W +   +RK+M+D GV K+PG S IEVNN 
Sbjct: 460 KQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVNNR 519

Query: 474 VREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKE 524
           V EF +GD +H  S  + + L +J  + K+  YV       H +M +  KE
Sbjct: 520 VHEFVAGDKLHPQSERIFEVLCKJNLQSKIAMYVQKE----HVEMLESNKE 566



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 146/328 (44%), Gaps = 41/328 (12%)

Query: 122 DYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRI 181
            Y   SLLK C+      L+   Q HCF +  GL+ +  + +  I   +       +  I
Sbjct: 41  SYHLLSLLKQCS-----NLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSI 95

Query: 182 FENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSL 241
           F + + P +  YN II A +      EA+ L+  +   +L+    ++   L +   L ++
Sbjct: 96  FTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAI 155

Query: 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
            +G+ IH      GL   + V TALI M++ CG + +A  +FD +  +D   W+AM+  Y
Sbjct: 156 HVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGY 215

Query: 302 ATHG-------------------------------QGHKSILMFEEMMKAQVSPDEITFL 330
           A  G                               + +++I MF  M   +V PDEI  L
Sbjct: 216 AKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAML 275

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
             L AC+H G ++ G  + ++  DK+G+   +     ++D+  + G++++A      +  
Sbjct: 276 AALSACAHLGALELG-EWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEH 334

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVIE 418
           KS  I W +++   + H   GL ++ +E
Sbjct: 335 KSV-ITWTSMIDGLALH---GLGREALE 358


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/484 (41%), Positives = 306/484 (63%), Gaps = 4/484 (0%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  LFD +PE + + F T+ +GY+ S   + AI LFV L +  +LP+ ++F S+L+ACA 
Sbjct: 92  ASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRL-HREVLPNQFTFASVLQACAT 150

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           +  E L  G Q+HC  IK+GL+S+++V   L+++YA+C  +E +  +F        V++N
Sbjct: 151 M--EGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWN 208

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
            +I  + +     +AL LF  + E  ++ T+VT  SAL +CA L +L+ G  IH    K 
Sbjct: 209 TVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKT 268

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
             DK + V  ALIDM+AKCG + DA  VFD M+ +D  +W+AMI  Y+ HG G +++ +F
Sbjct: 269 TFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIF 328

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
           ++M + +V PD++TF+G+L AC++ GL+D+G  YF SM   +GI P I+HY CMV LLGR
Sbjct: 329 DKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGR 388

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
            G LD+A + IDE+P + + ++WR LL +C  HN++ L +   +R+ E++      +V+L
Sbjct: 389 GGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLL 448

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
           SN+ A A RW++V  +RK MK +GV K PG S IE    V  F  GD  H     +   L
Sbjct: 449 SNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGML 508

Query: 495 DELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
           + L  + K  GY+P+ ++V   D+EDEEKE  L  HSE+LA++FG++ TP G+ IR++KN
Sbjct: 509 EWLHMKTKKAGYIPNYNVVLL-DVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKN 567

Query: 555 LRVC 558
           LR+C
Sbjct: 568 LRIC 571



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 170/332 (51%), Gaps = 13/332 (3%)

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
           C+  +    GK LHC  +K G   +L+    L+N+Y +   +  A ++F+ + E   +S+
Sbjct: 48  CIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISF 107

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
             +I  YA S R  EA+ LF  L  R + P   T  S L +CA +  L+LG  IH ++ K
Sbjct: 108 VTLIQGYAESVRFLEAIELFVRLH-REVLPNQFTFASVLQACATMEGLNLGNQIHCHVIK 166

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
            GL   V V+ AL+D++AKCGR+++++ +F     ++   W+ +IV +   G G K++ +
Sbjct: 167 IGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRL 226

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           F  M++ +V   E+T+   L AC+    ++ G    +S+  K      I     ++D+  
Sbjct: 227 FLNMLEYRVQATEVTYSSALRACASLAALEPGLQ-IHSLTVKTTFDKDIVVTNALIDMYA 285

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE-LDDSHGG--- 429
           + G + +A R + +L  K   + W  ++S  S H   GL ++ + RIF+ + ++      
Sbjct: 286 KCGSIKDA-RLVFDLMNKQDEVSWNAMISGYSMH---GLGREAL-RIFDKMQETEVKPDK 340

Query: 430 -DYVILSNLCARAGRWEDVD-YLRKLMKDRGV 459
             +V + + CA AG  +    Y   +++D G+
Sbjct: 341 LTFVGVLSACANAGLLDQGQAYFTSMIQDHGI 372



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 153/291 (52%), Gaps = 13/291 (4%)

Query: 22  PNAL---SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PN     S+L  C +  GL    QIH   IK  L +D+ V   L++   +      ME++
Sbjct: 136 PNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAK---CGRMENS 192

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
             LF   P  + V +NT+  G+ +     +A+ LF+ +L   +   + ++ S L+ACA +
Sbjct: 193 MELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASL 252

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
              ALE G Q+H   +K   + ++ V   LI++YA+C  ++ AR +F+ +++   VS+NA
Sbjct: 253 A--ALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNA 310

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK-WIHEYIKKY 254
           +I+ Y+      EAL +F ++QE  +KP  +T +  LS+CA  G LD G+ +    I+ +
Sbjct: 311 MISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDH 370

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATH 304
           G++  ++  T ++ +  + G LD AV + D +  +     W A++ A   H
Sbjct: 371 GIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIH 421


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/540 (38%), Positives = 321/540 (59%), Gaps = 13/540 (2%)

Query: 26  SLLPRCTSF--RGLKQI-HAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+LP C     R L  + H   +K  L  +L V   LI+   +      +  AH +F  +
Sbjct: 173 SVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGK---LGMLTEAHWVFGGM 229

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
              D+V +N++     +      A+ LF  ++ SG+ PD  +  SL  A A  G E    
Sbjct: 230 ALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDEL--G 287

Query: 143 GKQLHCFAIKLGLN-SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            K +HC+  + G +  ++     ++++YA+ S ++AA+++F+N+ +  VVS+N +IT Y 
Sbjct: 288 AKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYM 347

Query: 202 RSSRPNEALSLFRELQ-ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
           ++   NEA+ ++ ++     LKP   T +S L + + LG L  G  +H    K GL+  V
Sbjct: 348 QNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDV 407

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            V T LID++AKCG+L +A+ +F++M  + T  W+A+I     HG G K++ +F +M + 
Sbjct: 408 YVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQE 467

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
           ++ PD +TF+ LL ACSH GLVD+G ++F  M+  YGIVP  KHY CMVD+LGRAG+LDE
Sbjct: 468 EIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDE 527

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           A+ FI  +PIK    +W  LL +C  H N+ + K   + +FELD  + G YV++SN+ A+
Sbjct: 528 AFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAK 587

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGV--HSYSTDLQKALDELV 498
            G+W+ VD +R L++ + + K PG SS+EV   V  F+SG     H    ++Q+ L +L+
Sbjct: 588 IGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYSGTQTEPHPQHEEIQRGLHDLL 647

Query: 499 KELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            ++K  GYVPD S V   D+E++EKE  L  HSE+LAI FG++NTPPGT + + KNLRVC
Sbjct: 648 AKMKSAGYVPDYSFVLQ-DVEEDEKEQILNNHSERLAIAFGIINTPPGTPLHIYKNLRVC 706



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 157/313 (50%), Gaps = 11/313 (3%)

Query: 118 LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL-NSNLYVCTTLINLYAECSDVE 176
           L PD ++FP L++A     A       QLH  A++LGL + N++   +L++ Y     V 
Sbjct: 65  LRPDSFTFPPLVRA-----APGPASAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVA 119

Query: 177 AARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236
            A R+F+ + E  V ++NA+++   R++R  +A++L   +    +    VT+ S L  C 
Sbjct: 120 EAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCV 179

Query: 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSA 296
           +LG   L   +H Y  K+GL   + V  ALID++ K G L +A  VF  M+ +D   W++
Sbjct: 180 VLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNS 239

Query: 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKY 356
           +I A    G+   ++ +F  MM++ V PD +T + L  A +  G      +    +R + 
Sbjct: 240 IISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRG 299

Query: 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQV 416
             V  I     MVD+  +  ++D A +  D LP +   + W TL++    +   GLA + 
Sbjct: 300 WDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDV-VSWNTLITGYMQN---GLANEA 355

Query: 417 IERIFELDDSHGG 429
           I RI+    +H G
Sbjct: 356 I-RIYNDMHNHEG 367


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/487 (41%), Positives = 306/487 (62%), Gaps = 3/487 (0%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +E A LLF +I +PD+V +N M  GY+ +     ++ LF ELL SG   +  S   L+  
Sbjct: 258 IETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPV 317

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
               G   L   + +H F  K G+ SN  V T L  +Y+  +++E+AR +F+  SE  + 
Sbjct: 318 FFPFGH--LHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLA 375

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+NA+I+ YA++    +A+SLF+E+Q+  ++P  VT+ S LS+CA LG+L LGKW+H+ I
Sbjct: 376 SWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLI 435

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            +   +  + V+TALIDM+AKCG + +A  +F  M  K+   W+AMI  Y  HG GH+++
Sbjct: 436 NRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEAL 495

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +F EM+ ++VSP  +TFL +LYACSH GLV EG   F SM   +G  P  +HY CMVDL
Sbjct: 496 NLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDL 555

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
           LGRAG LD+A  FI ++P++  P +W  LL +C  H +  LA+   +++FELD  + G Y
Sbjct: 556 LGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYY 615

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           V+LSN+ +    + +   +R ++K R + K PGC+ IEV N +  F SGD  H  +T + 
Sbjct: 616 VLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIY 675

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
             L++L  +++  G+  +T    H D+E+EEKE+ ++ HSEKLAI FGL+ + PGT IR+
Sbjct: 676 AMLEKLTGKMREAGFQTETGTALH-DVEEEEKELMVKVHSEKLAIAFGLITSEPGTEIRI 734

Query: 552 VKNLRVC 558
           +KNLRVC
Sbjct: 735 IKNLRVC 741



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/399 (28%), Positives = 199/399 (49%), Gaps = 12/399 (3%)

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
           S +  A  +FD + E D VL+NTM  G  ++     AI +F +++  G+  D  +  ++L
Sbjct: 155 SRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVL 214

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC 189
              A +   AL  G Q  C A+K+G +S+ YV T L  LY++C ++E AR +F  I +P 
Sbjct: 215 PGVAELQDLALGMGIQ--CLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPD 272

Query: 190 VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           +VSYNA+I+ Y  ++    ++ LF+EL     K    +++  +      G L L + IH 
Sbjct: 273 LVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHG 332

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
           +  K G+     V+TAL  ++++   ++ A  +FD  S K   +W+AMI  YA +G   K
Sbjct: 333 FCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEK 392

Query: 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369
           +I +F+EM K +V P+ +T   +L AC+  G +  G  + + + ++      I     ++
Sbjct: 393 AISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLG-KWVHDLINRESFESNIFVSTALI 451

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH-- 427
           D+  + G + EA R    +P K+  + W  ++S    H   G   + +    E+  S   
Sbjct: 452 DMYAKCGSITEAQRLFSMMPEKNA-VTWNAMISGYGLH---GYGHEALNLFNEMLHSRVS 507

Query: 428 --GGDYVILSNLCARAGRWEDVD-YLRKLMKDRGVLKVP 463
             G  ++ +   C+ AG   + D   R ++ D G   +P
Sbjct: 508 PTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLP 546



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 120/509 (23%), Positives = 229/509 (44%), Gaps = 55/509 (10%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           L+L+ R ++   L Q HA  I   L NDL  +TKL +  +      +++ A LLF  IP 
Sbjct: 14  LTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSH---LKAIDQASLLFSTIPN 70

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSG-LLPDDYSFPSLLKACACVGAEALEEG 143
           PD+ L+N + R +S + +P  A+ L+  L  S  L PD++++  ++   + +G   L   
Sbjct: 71  PDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHA 130

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
                 +I  G  S+L+V + ++  Y + S V AAR++F+ + E   V +N +++   ++
Sbjct: 131 H-----SIVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKN 185

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
           S  +EA+ +F ++ +  +     T+ + L   A L  L LG  I     K G   +  V 
Sbjct: 186 SCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVI 245

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
           T L  +++KCG ++ A  +F  +   D  +++AMI  Y  + +   S+ +F+E++ +   
Sbjct: 246 TGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEK 305

Query: 324 PDEITFLGL-----------LYACSH---------------TGL--VDEGWNYFYSMRDK 355
            +  + +GL           L  C H               T L  V    N   S R  
Sbjct: 306 VNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLL 365

Query: 356 Y--GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP---IKSTPILWRTLLSSCSSHNNL 410
           +       +  +  M+    + G  ++A     E+    ++  P+   ++LS+C+    L
Sbjct: 366 FDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGAL 425

Query: 411 GLAKQVIERI-FELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIE 469
            L K V + I  E  +S+      L ++ A+ G   +   L  +M ++        +++ 
Sbjct: 426 SLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEK--------NAVT 477

Query: 470 VNNVVREFFSGDGVHSYSTDLQKALDELV 498
            N ++    SG G+H Y  +     +E++
Sbjct: 478 WNAMI----SGYGLHGYGHEALNLFNEML 502


>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
 gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
          Length = 565

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/525 (40%), Positives = 324/525 (61%), Gaps = 20/525 (3%)

Query: 47  THLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR-IPEPDIVLFNTMARGYSRSKT-PI 104
           T+   ++  +  L+N   Q+ + S ++  H    R I  P+   +N + + YS+S     
Sbjct: 8   TNTNTNIKHINHLLN---QSNSISHVKQIHAQILRTIHTPNSFTWNILIQSYSKSTLHKQ 64

Query: 105 RAIFLFVELLN---SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYV 161
           +AI L+  ++    + L PD +++P +LKACA + +  L EGKQ+H   +KLG   + Y+
Sbjct: 65  KAILLYKAIITEQENELFPDKHTYPFVLKACAYLFS--LFEGKQVHAHVLKLGFELDTYI 122

Query: 162 CTTLINLYAECSDVEAARRIFENISE-PCVVSYNAIITAYARSSRPNEALSLFRELQERN 220
           C +LI+ YA C  +E AR++F+ + E   VVS+N +I +YA+    +  L +F E+  + 
Sbjct: 123 CNSLIHFYASCGYLETARKVFDRMCEWRNVVSWNVMIDSYAKVGDYDIVLIMFCEMM-KV 181

Query: 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK----VNTALIDMHAKCGRL 276
            +P   TM S + +C  LGSL LG W+H ++ K   DK V     VNT L+DM+ KCG L
Sbjct: 182 YEPDCYTMQSVIRACGGLGSLSLGMWVHAFVLK-KCDKNVVCDVLVNTCLVDMYCKCGSL 240

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDEITFLGLLYA 335
           + A  VF+ MS +D  +W+++I+ +A HG+   ++  F  M+K + + P+ ITF+G+L A
Sbjct: 241 EIAKQVFEGMSYRDVSSWNSIILGFAVHGKAKAALDYFVRMVKVEKIVPNSITFVGVLSA 300

Query: 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
           C+H+G+VDEG  YF  M  +Y + P + HYGC+VDL  RAG + EA   + E+PIK   +
Sbjct: 301 CNHSGMVDEGLMYFEMMTKEYNVEPSLVHYGCLVDLYARAGHIQEALNVVSEMPIKPDAV 360

Query: 396 LWRTLLSSC-SSHNNLGLAKQVIERIFELDDS-HGGDYVILSNLCARAGRWEDVDYLRKL 453
           +WR+LL +C   H ++ L++++ ++IFE + S  GG YV+LS + A A RW DV  LRKL
Sbjct: 361 IWRSLLDACYKQHASVELSEEMAKQIFESNGSVCGGAYVLLSKVYASASRWNDVGLLRKL 420

Query: 454 MKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLV 513
           M D+GV K PGCS IE+N    EFF+GD  H  S D+ K ++E+ ++L+ VGY+PD S  
Sbjct: 421 MNDKGVSKKPGCSLIEINGAAHEFFAGDTNHPQSKDIYKFMNEIQEKLESVGYLPDYSGA 480

Query: 514 HHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
              D  +E K+  +R HSE+LAI FGLLN+ P   IRV KNLRVC
Sbjct: 481 PLIDEINEGKQNTMRLHSERLAIAFGLLNSKPSMPIRVFKNLRVC 525



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 152/293 (51%), Gaps = 17/293 (5%)

Query: 34  FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE-PDIVLFNT 92
           F G KQ+HA  +K   + D  +   LI+F     +   +E A  +FDR+ E  ++V +N 
Sbjct: 102 FEG-KQVHAHVLKLGFELDTYICNSLIHF---YASCGYLETARKVFDRMCEWRNVVSWNV 157

Query: 93  MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
           M   Y++       + +F E++     PD Y+  S+++AC  +G+ +L  G  +H F +K
Sbjct: 158 MIDSYAKVGDYDIVLIMFCEMMKV-YEPDCYTMQSVIRACGGLGSLSL--GMWVHAFVLK 214

Query: 153 ---LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEA 209
                +  ++ V T L+++Y +C  +E A+++FE +S   V S+N+II  +A   +   A
Sbjct: 215 KCDKNVVCDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAVHGKAKAA 274

Query: 210 LSLF-RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI-KKYGLDKYVKVNTALI 267
           L  F R ++   + P  +T +  LS+C   G +D G    E + K+Y ++  +     L+
Sbjct: 275 LDYFVRMVKVEKIVPNSITFVGVLSACNHSGMVDEGLMYFEMMTKEYNVEPSLVHYGCLV 334

Query: 268 DMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           D++A+ G + +A++V   M  K D   W +++ A     + H S+ + EEM K
Sbjct: 335 DLYARAGHIQEALNVVSEMPIKPDAVIWRSLLDACY---KQHASVELSEEMAK 384


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/522 (38%), Positives = 317/522 (60%), Gaps = 4/522 (0%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +Q H + +K+ L  D+ V   L++   +     S++ A  +FDR+P  +++ +  +  GY
Sbjct: 165 RQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGY 224

Query: 98  SRSKTPIR-AIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
            +S    R AI LF+E++   + P+ ++F S+LKACA +    L  G+Q++   +K+ L 
Sbjct: 225 VQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWL--GEQVYALVVKMRLA 282

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
           S   V  +LI++Y+ C ++E AR+ F+ + E  +VSYN I+ AYA+S    EA  LF E+
Sbjct: 283 SINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEI 342

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           +         T  S LS  + +G++  G+ IH  I K G    + +  ALI M+++CG +
Sbjct: 343 EGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNI 402

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           + A  VF+ M   +  +W++MI  +A HG   +++  F +M++A VSP+E+T++ +L AC
Sbjct: 403 EAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSAC 462

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           SH GL+ EG  +F SM+ ++GIVP ++HY C+VDLLGR+G L+EA   ++ +P K+  ++
Sbjct: 463 SHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALV 522

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
            RT L +C  H N+ L K   E I E D      Y++LSNL A AG+WE+V  +RK MK+
Sbjct: 523 LRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKE 582

Query: 457 RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHG 516
           R + K  GCS IEV N V +F+ GD  H  + ++   LD+L  ++K +GY+P T  V H 
Sbjct: 583 RNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDELDQLALKIKELGYIPSTDFVLH- 641

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           D+E+E+KE  L  HSEK+A+ +G ++T     IRV KNLRVC
Sbjct: 642 DVEEEQKEQYLFQHSEKIAVAYGFISTSTSRPIRVFKNLRVC 683



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/430 (25%), Positives = 220/430 (51%), Gaps = 13/430 (3%)

Query: 38  KQIHAVTIKT-HLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           K I    +KT + ++D+ V   LI+   +      +E A+ +FDR+P+ ++V +  M   
Sbjct: 62  KIIFGFLLKTGYFESDVCVGCALIDMFVKG--NGDLESAYKVFDRMPDRNVVTWTLMITR 119

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           + +      A+ LF++++ SG +PD ++   ++ ACA +G  +L  G+Q HC  +K GL+
Sbjct: 120 FQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSL--GRQFHCLVMKSGLD 177

Query: 157 SNLYVCTTLINLYAEC---SDVEAARRIFENISEPCVVSYNAIITAYARSSRPN-EALSL 212
            ++ V  +L+++YA+C     V+ AR++F+ +    V+S+ AIIT Y +S   + EA+ L
Sbjct: 178 LDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIEL 237

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           F E+ +  +KP   T  S L +CA L  + LG+ ++  + K  L     V  +LI M+++
Sbjct: 238 FLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSR 297

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
           CG +++A   FD +  K+  +++ ++ AYA      ++  +F E+  A    +  TF  L
Sbjct: 298 CGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASL 357

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L   S  G + +G    +S   K G    +     ++ +  R G ++ A++  +E+    
Sbjct: 358 LSGASSIGAIGKG-EQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMG-DG 415

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS-HGGDYVILSNLCARAGRW-EDVDYL 450
             I W ++++  + H     A +   ++ E   S +   Y+ + + C+  G   E + + 
Sbjct: 416 NVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHF 475

Query: 451 RKLMKDRGVL 460
           + +  + G++
Sbjct: 476 KSMKVEHGIV 485



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 183/376 (48%), Gaps = 41/376 (10%)

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
           D+V ++ +   Y+ ++    AI  F ++L  G  P++Y F  + +AC+    E +  GK 
Sbjct: 6   DLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACS--NKENISLGKI 63

Query: 146 LHCFAIKLG-LNSNLYVCTTLINLYAECS-DVEAARRIFENISEPCVVSYNAIITAYARS 203
           +  F +K G   S++ V   LI+++ + + D+E+A ++F+ + +  VV++  +IT + + 
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
               +A+ LF ++      P   T+   +S+CA +G L LG+  H  + K GLD  V V 
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVG 183

Query: 264 TALIDMHAKC---GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ-GHKSILMFEEMMK 319
            +L+DM+AKC   G +DDA  VFD M   +  +W+A+I  Y   G    ++I +F EM++
Sbjct: 184 CSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQ 243

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEG------------------WNYFYSMRDKYGIVPG 361
            QV P+  TF  +L AC++   +  G                   N   SM  + G +  
Sbjct: 244 GQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMEN 303

Query: 362 IKH------------YGCMVDLLGRAGRLDEAYRFIDELPIKSTPI---LWRTLLSSCSS 406
            +             Y  +V+   ++   +EA+   +E+    T +    + +LLS  SS
Sbjct: 304 ARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASS 363

Query: 407 HNNLGLAKQVIERIFE 422
              +G  +Q+  RI +
Sbjct: 364 IGAIGKGEQIHSRILK 379



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 66/137 (48%), Gaps = 7/137 (5%)

Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNY 348
           +D  +WSA+I  YA + +  ++I  F +M++    P+E  F G+  ACS+   +  G   
Sbjct: 5   RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLG-KI 63

Query: 349 FYSMRDKYGIVPGIKHYGC-MVDLLGRA-GRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
            +    K G        GC ++D+  +  G L+ AY+  D +P ++  + W  ++   + 
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNV-VTWTLMI---TR 119

Query: 407 HNNLGLAKQVIERIFEL 423
              LG ++  ++   ++
Sbjct: 120 FQQLGFSRDAVDLFLDM 136


>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/531 (38%), Positives = 308/531 (58%), Gaps = 40/531 (7%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           LSLL +C++ + L Q H   +   L  D  +L++ I  C+   +     ++H +F     
Sbjct: 45  LSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACS---SLGFSHYSHSIFTHKTR 101

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
           PDI L+NT+ +  S  +    AI L+  +L S L  D YS P +LK  A V   A+  G+
Sbjct: 102 PDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLK--AVVRLLAIHVGR 159

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAEC-------------------------------S 173
           Q+HC AI  GL S+++V T LI +Y+ C                                
Sbjct: 160 QIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVG 219

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
           DV+ AR +FE + E  V+S+ A+I  YA+  RPNEA+++FR +Q   ++P ++ ML+ALS
Sbjct: 220 DVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALS 279

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
           +CA LG+L+LG+WIH YI K+GL K V +N ALIDM+AKCG+++ A+ VF NM  K    
Sbjct: 280 ACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVIT 339

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           W++MI   A HG G +++ MF  M + ++ P+EITF+ +L AC H GLV+ G  YF  M 
Sbjct: 340 WTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMG 399

Query: 354 DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413
            KYGI P I+HYGCM+DLLGRAG L EA   +  +P ++   +W +LL++   H +  L 
Sbjct: 400 TKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELG 459

Query: 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNV 473
           KQ ++ + +++  + G+Y +LSN+ A   +W +   +RK+M+D GV K+PG S IEVNN 
Sbjct: 460 KQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVNNR 519

Query: 474 VREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKE 524
           V EF +GD +H  S  + + L ++  + K+  YV       H +M +  KE
Sbjct: 520 VHEFVAGDKLHPQSERIFEVLCKINLQSKIAMYVQKE----HVEMLESNKE 566



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 146/328 (44%), Gaps = 41/328 (12%)

Query: 122 DYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRI 181
            Y   SLLK C+      L+   Q HCF +  GL+ +  + +  I   +       +  I
Sbjct: 41  SYHLLSLLKQCS-----NLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSI 95

Query: 182 FENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSL 241
           F + + P +  YN II A +      EA+ L+  +   +L+    ++   L +   L ++
Sbjct: 96  FTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAI 155

Query: 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
            +G+ IH      GL   + V TALI M++ CG + +A  +FD +  +D   W+AM+  Y
Sbjct: 156 HVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGY 215

Query: 302 ATHG-------------------------------QGHKSILMFEEMMKAQVSPDEITFL 330
           A  G                               + +++I MF  M   +V PDEI  L
Sbjct: 216 AKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAML 275

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
             L AC+H G ++ G  + ++  DK+G+   +     ++D+  + G++++A      +  
Sbjct: 276 AALSACAHLGALELG-EWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEH 334

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVIE 418
           KS  I W +++   + H   GL ++ +E
Sbjct: 335 KSV-ITWTSMIDGLALH---GLGREALE 358


>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 611

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/567 (37%), Positives = 340/567 (59%), Gaps = 20/567 (3%)

Query: 3   TTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINF 62
           TT +P    +  P       + L LL R ++   L Q  A  +K+ L ++  V+T+L   
Sbjct: 14  TTTAPASNPTASPSRAAEQ-HCLRLLERSSTPASLLQSFAFLLKSGLHSNPLVVTRLFAA 72

Query: 63  CTQ------NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPI---RAIFLFVEL 113
                     P  SS     LL   +P  D  L NT+ R +  S  P    RA   F  +
Sbjct: 73  SASAAPALLEPLVSS-----LLGPSLPL-DAFLVNTLIRTHVTSPFPSARRRAAAFFPLM 126

Query: 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA--E 171
           L + + P+ ++FP LLK+CA +     + G Q H  A+K G  ++ YV  TLI++Y+   
Sbjct: 127 LRAAVAPNKFTFPFLLKSCAALPGSP-DVGLQAHAAALKFGFAADHYVSNTLIHMYSCFG 185

Query: 172 CSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSA 231
              +  AR +FE +     V+++A+I  Y R+   ++A+ LFR +Q   ++P +VT++  
Sbjct: 186 AGFLGDARNVFERMPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQVSGVRPDEVTVIGV 245

Query: 232 LSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDT 291
           L++ A LG+L+L +W+  ++++ G+ K V +  ALID  AKCG +D AV+VF+ M  +  
Sbjct: 246 LAAAADLGALELTRWVGRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMEERTV 305

Query: 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYS 351
            +W+++I A A  G+G +++ +FEEM    V PD++ F+G+L ACSH G+VDEG  YF S
Sbjct: 306 VSWTSVIDALAMEGRGKEAVGVFEEMKAVGVLPDDVAFIGVLTACSHAGMVDEGRGYFDS 365

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
           M+ +YGI P I+HYGCMVD+ GRAG +++   F+  +P+K  PI+WRTL+++C +H  L 
Sbjct: 366 MKTEYGIEPKIEHYGCMVDMFGRAGMVEQGLEFVRAMPMKPNPIIWRTLVAACRAHGRLE 425

Query: 412 LAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVN 471
           L + +   +     +H  +YV+LSN+ A   RW++   +R+ M  RG+ KVPGCS +E++
Sbjct: 426 LGESITRNLLNEFPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVELD 485

Query: 472 NVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHS 531
             V EF +GD  H    ++ + ++E+ +EL+ +G++  TS V   D+++E+KE AL++HS
Sbjct: 486 GEVHEFIAGDESHPQYKEIYRMVEEMSRELRRIGHIAATSEVLL-DLDEEDKEGALQWHS 544

Query: 532 EKLAITFGLLNTPPGTTIRVVKNLRVC 558
           EKLAI F LL TPPGT +RVVKNLRVC
Sbjct: 545 EKLAIAFVLLRTPPGTQVRVVKNLRVC 571


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/572 (38%), Positives = 327/572 (57%), Gaps = 20/572 (3%)

Query: 4   TPSPPITQSPPPKLCTNTPNAL-SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINF 62
           +P  P   SP      N    + SL   C+    LKQ+HA T++T    +   L      
Sbjct: 21  SPHIPPASSPSASTAGNHHQRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKI 80

Query: 63  CTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKT-PIRAIFLFVELLNSG-LLP 120
              + + S + +A  +FD I      ++NT+ R  +   +    A  L+ ++L  G   P
Sbjct: 81  LQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSP 140

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           D ++FP +LKACA +      EGKQ+HC  +K G   ++YV   LI+LY  C  ++ AR+
Sbjct: 141 DKHTFPFVLKACAYIFG--FSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARK 198

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
           +F+ + E  +VS+N++I A  R    + AL LFRE+Q R+ +P   TM S LS+CA LGS
Sbjct: 199 VFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGS 257

Query: 241 LDLGKWIHEYI-KKYGLDKY--VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297
           L LG W H ++ +K  +D    V V  +LI+M+ KCG L  A  VF  M  +D  +W+AM
Sbjct: 258 LSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAM 317

Query: 298 IVAYATHGQGHKSILMFEEMM--KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355
           I+ +ATHG+  +++  F+ M+  +  V P+ +TF+GLL AC+H G V++G  YF  M   
Sbjct: 318 ILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRD 377

Query: 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSC-----SSHNNL 410
           Y I P ++HYGC+VDL+ RAG + EA   +  +P+K   ++WR+LL +C     S   + 
Sbjct: 378 YCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSE 437

Query: 411 GLAKQVIERIFELDDSHG---GDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSS 467
            +A+ +I    + + S+G   G YV+LS + A A RW DV  +RKLM + G+ K PGCSS
Sbjct: 438 EIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSS 497

Query: 468 IEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD-MEDEEKEIA 526
           IE+N +  EFF+GD  H  +  + + L  +   L+ +GY+PD S     D   D  KE +
Sbjct: 498 IEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYS 557

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           LR HSE+LAI FGL+N PP T IR+ KNLRVC
Sbjct: 558 LRLHSERLAIAFGLINLPPQTPIRIFKNLRVC 589


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/572 (38%), Positives = 327/572 (57%), Gaps = 20/572 (3%)

Query: 4   TPSPPITQSPPPKLCTNTPNAL-SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINF 62
           +P  P   SP      N    + SL   C+    LKQ+HA T++T    +   L      
Sbjct: 30  SPHIPPASSPSASTAGNHHQRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKI 89

Query: 63  CTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKT-PIRAIFLFVELLNSG-LLP 120
              + + S + +A  +FD I      ++NT+ R  +   +    A  L+ ++L  G   P
Sbjct: 90  LQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSP 149

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           D ++FP +LKACA +      EGKQ+HC  +K G   ++YV   LI+LY  C  ++ AR+
Sbjct: 150 DKHTFPFVLKACAYIFG--FSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARK 207

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
           +F+ + E  +VS+N++I A  R    + AL LFRE+Q R+ +P   TM S LS+CA LGS
Sbjct: 208 VFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGS 266

Query: 241 LDLGKWIHEYI-KKYGLDKY--VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297
           L LG W H ++ +K  +D    V V  +LI+M+ KCG L  A  VF  M  +D  +W+AM
Sbjct: 267 LSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAM 326

Query: 298 IVAYATHGQGHKSILMFEEMM--KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355
           I+ +ATHG+  +++  F+ M+  +  V P+ +TF+GLL AC+H G V++G  YF  M   
Sbjct: 327 ILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRD 386

Query: 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSC-----SSHNNL 410
           Y I P ++HYGC+VDL+ RAG + EA   +  +P+K   ++WR+LL +C     S   + 
Sbjct: 387 YCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSE 446

Query: 411 GLAKQVIERIFELDDSHG---GDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSS 467
            +A+ +I    + + S+G   G YV+LS + A A RW DV  +RKLM + G+ K PGCSS
Sbjct: 447 EIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSS 506

Query: 468 IEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD-MEDEEKEIA 526
           IE+N +  EFF+GD  H  +  + + L  +   L+ +GY+PD S     D   D  KE +
Sbjct: 507 IEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYS 566

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           LR HSE+LAI FGL+N PP T IR+ KNLRVC
Sbjct: 567 LRLHSERLAIAFGLINLPPQTPIRIFKNLRVC 598


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/542 (37%), Positives = 319/542 (58%), Gaps = 10/542 (1%)

Query: 20  NTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N    +S+L  C S   L   K IH   IK+ +  D ++   L+N   +     S  +A 
Sbjct: 190 NMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAK---CGSANYAC 246

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +F  IPE D+V +  +  G+  ++     + +F ++L  G  P+ Y+F S+L++C+ + 
Sbjct: 247 KVFGEIPERDVVSWTALITGFV-AEGYGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLS 305

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
              L  GKQ+H   +K  L+ N +V T L+++YA+   +E A  IF  + +  + ++  I
Sbjct: 306 DVDL--GKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVI 363

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           +  YA+  +  +A+  F ++Q   +KP + T+ S+LS C+ + +LD G+ +H    K G 
Sbjct: 364 VAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQ 423

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
              + V +AL+DM+AKCG ++DA  VFD +  +DT +W+ +I  Y+ HGQG K++  FE 
Sbjct: 424 SGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEA 483

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M+     PDE+TF+G+L ACSH GL++EG  +F S+   YGI P I+HY CMVD+LGRAG
Sbjct: 484 MLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAG 543

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSN 436
           +  E   FI+E+ + S  ++W T+L +C  H N+   ++   ++FEL+     +Y++LSN
Sbjct: 544 KFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSN 603

Query: 437 LCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDE 496
           + A  G W+DV  +R LM  RGV K PGCS +EVN  V  F S DG H    ++   L +
Sbjct: 604 MFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQD 663

Query: 497 LVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLR 556
           L ++L  VGY P+T  V H ++ D EK+  L YHSE+LA+ F LL+T    TIR+ KNLR
Sbjct: 664 LHQKLMSVGYTPNTDHVLH-NVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLR 722

Query: 557 VC 558
           +C
Sbjct: 723 IC 724



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 151/310 (48%), Gaps = 8/310 (2%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           LK+I    IK  +  D ++ + L+N   +     S++ A  + + +P  D+  +N     
Sbjct: 8   LKKIIFRVIKNGICPDSHLWSSLVNVYVK---CESLQCARQVLEEMPIQDVQQWNQKLSS 64

Query: 97  YSRSKTPIR-AIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155
            + S  P++ A+ LF  + ++ +  + + F SL+ A A +G      G+ +H    K G 
Sbjct: 65  -ANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDN--HYGESIHACVCKYGF 121

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
            S++ +    + +Y +   VE   + F+ +    + S N +++ +  +   ++   +  +
Sbjct: 122 ESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQ 181

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
           L     +P   T +S L +CA  G L+ GK IH  + K G++    +  +L++++AKCG 
Sbjct: 182 LLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGS 241

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
            + A  VF  +  +D  +W+A+I  +   G G   + +F +M+    +P+  TF+ +L +
Sbjct: 242 ANYACKVFGEIPERDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMYTFISILRS 300

Query: 336 CSHTGLVDEG 345
           CS    VD G
Sbjct: 301 CSSLSDVDLG 310


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/442 (42%), Positives = 297/442 (67%), Gaps = 4/442 (0%)

Query: 118 LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEA 177
           L PD+ +  SL+ ACA +G   LE GK LH ++ +LGL+ NL V   ++++Y +C D+E+
Sbjct: 7   LRPDEVTMVSLVPACAQLGN--LERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIES 64

Query: 178 ARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL 237
           A+ +F  I E  V+S+ ++++  A+S    E+L+LFR++Q   ++P ++T++  LS+CA 
Sbjct: 65  AQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQ 124

Query: 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297
            G+LD GK+IH  I K+ ++  + + TAL+DM+AKCG +D A+ VF  M  ++   W+AM
Sbjct: 125 TGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAM 184

Query: 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG 357
           I   A HG G  +I +F++M   ++ PD++TF+ LL ACSH GLVDEG   F +M++K+ 
Sbjct: 185 IGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQ 244

Query: 358 IVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
           I P ++HYGC+VDLL RA ++D+A  FI+ +PIK+  +LW TLL +C S  +  LA+++ 
Sbjct: 245 IEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIX 304

Query: 418 ERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREF 477
            R+ EL+    G YV+LSNL A   +W+    LRK MK++G+ K PGCS IE+N ++ +F
Sbjct: 305 RRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQF 364

Query: 478 FSGDGVHSYSTDLQKALDELVKELKM-VGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAI 536
            +GD  H  +  +   ++E+ + + +  G+VP T+ V   D+E+EEKE +L  HSEKLAI
Sbjct: 365 VAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLF-DIEEEEKEHSLFLHSEKLAI 423

Query: 537 TFGLLNTPPGTTIRVVKNLRVC 558
             GL++TP G+ IR+VKNLRVC
Sbjct: 424 ALGLISTPSGSPIRIVKNLRVC 445



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 126/220 (57%), Gaps = 3/220 (1%)

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
           NL+P +VTM+S + +CA LG+L+ GK +H Y K+ GLD+ + VN A++DM+ KC  ++ A
Sbjct: 6   NLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESA 65

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
             VF+ +  KD  +W++M+   A  G   +S+ +F +M   ++ PDEIT +G+L AC+ T
Sbjct: 66  QEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQT 125

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRT 399
           G +D+G  Y + + DK+ I   +     +VD+  + G +D A +    + +++    W  
Sbjct: 126 GALDQG-KYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNV-FTWNA 183

Query: 400 LLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439
           ++   + H +   A  + +++ E D     D   ++ LCA
Sbjct: 184 MIGGLAMHGHGEDAISLFDQM-EXDKLMPDDVTFIALLCA 222



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 157/288 (54%), Gaps = 12/288 (4%)

Query: 25  LSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFD 80
           +SL+P C     L   K +H+ + +  L  +L+V   +++ +C  +   S+ E    +F+
Sbjct: 15  VSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQE----VFN 70

Query: 81  RIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEAL 140
           RI E D++ + +M  G ++S     ++ LF ++    + PD+ +   +L ACA  G  AL
Sbjct: 71  RIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTG--AL 128

Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY 200
           ++GK +H    K  +N +L + T L+++YA+C  ++ A ++F  +    V ++NA+I   
Sbjct: 129 DQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGL 188

Query: 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK-KYGLDKY 259
           A      +A+SLF +++   L P DVT ++ L +C+  G +D G  + + +K K+ ++  
Sbjct: 189 AMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPR 248

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHGQ 306
           ++    ++D+  +  ++DDA++  +NM  K ++  W+ ++ A  + G 
Sbjct: 249 MEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGH 296


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/569 (35%), Positives = 333/569 (58%), Gaps = 39/569 (6%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           +S+L  CT F  +KQ+HA  I+  L     VLTKLI   T+        +  L+F ++  
Sbjct: 46  MSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMG-SYPLLVFGQVNY 104

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
           P+  L+  M RGY+       +   +  +   G+ P  ++F +L KAC    A  ++ GK
Sbjct: 105 PNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACG--AALNMDLGK 162

Query: 145 QLHCFAIKLG-LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN--------- 194
           Q+H   I +G   S+LYV  ++I+LY +C  +  AR++F+ +SE  VVS+          
Sbjct: 163 QVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKY 222

Query: 195 ----------------------AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232
                                 A++T YA++ RP EAL  F+++Q+  ++  +VT+   +
Sbjct: 223 GDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVI 282

Query: 233 SSCALLGSLDLGKWIHEYIKK--YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290
           S+CA LG++    WI +  ++  +G    V V +ALIDM++KCG  D+A  VF+ M  ++
Sbjct: 283 SACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERN 342

Query: 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350
             ++S+MI+ YA HG+ H ++ +F +M+K ++ P+++TF+G+L ACSH GLV++G   F 
Sbjct: 343 VFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFA 402

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
            M   +G+ P   HY CMVDLLGRAG L+EA   +  +P++    +W  LL +C  H N 
Sbjct: 403 KMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNP 462

Query: 411 GLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIE- 469
            +A+     +F+L+ +  G+Y++LSN+ A AGRWE+V  LRK+++++G  K PGCS  E 
Sbjct: 463 DIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEG 522

Query: 470 VNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRY 529
            N  + +FF+GD  H  S+++++AL +L++ L+  GY P+     + D+ D+EKE  L  
Sbjct: 523 KNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPY-DLTDDEKERILMS 581

Query: 530 HSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           HSEKLA+ +GLL T  G TI+++KN+R+C
Sbjct: 582 HSEKLALAYGLLCTEAGDTIKIMKNIRIC 610



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 107/256 (41%), Gaps = 24/256 (9%)

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           F +LQ +  K  +  ++S L  C L   +   K +H +I + GL +   V T LI M  K
Sbjct: 31  FPQLQHQR-KLLEWRLMSILHDCTLFSQI---KQVHAHIIRNGLSQCSYVLTKLIRMLTK 86

Query: 273 CGRLDDAVS-----VFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
              +D  +      VF  ++  +   W+AMI  YA  G   +S   +  M +  V P   
Sbjct: 87  ---VDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSF 143

Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
           TF  L  AC     +D G           G    +     M+DL  + G L  A +  DE
Sbjct: 144 TFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDE 203

Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC---ARAGR- 443
           +  +   + W  L+ + + + ++  A  +       DD    D V  + +    A+ GR 
Sbjct: 204 MSERDV-VSWTELIVAYAKYGDMESASGL------FDDLPLKDMVAWTAMVTGYAQNGRP 256

Query: 444 WEDVDYLRKLMKDRGV 459
            E ++Y +K M+D G+
Sbjct: 257 KEALEYFQK-MQDVGM 271


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 224/595 (37%), Positives = 335/595 (56%), Gaps = 62/595 (10%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI-- 82
           +SLL   T    + QIHA+ IKT L  +  VL KL+       + + + +A  +FD I  
Sbjct: 7   MSLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPS 66

Query: 83  ------------------PEPDIVLFNTMAR-------GYS---------RSKTPIRAIF 108
                             P+  + LF  M          YS         R K P     
Sbjct: 67  PDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQK 126

Query: 109 LFVELLNSGLLPDDYSFPSLLKACACVG-----AEALEE-------------GKQLHCFA 150
           L  ++L  GL  D +   +L++  A  G        L+E              + +    
Sbjct: 127 LHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGE 186

Query: 151 IKLGLN-------SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
           I L  +        +L    T+I+ +A   DV  A+++F+   E  ++S++++I AYA++
Sbjct: 187 INLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKA 246

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
            + NEAL LF E+Q  N+ P  VTM+S LS+C  +G+L +GK IHE I++  ++  +K+ 
Sbjct: 247 RQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLG 306

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
           T+L+DM+AKCG +D+++ VF+ M+ +D  AWSAMI+  A HG G  ++  F +M+   + 
Sbjct: 307 TSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIK 366

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
           P+++TF+G+L ACSH GLVDEGW YF SM   Y + P I+HYGC+VD+LGRAGRL EA  
Sbjct: 367 PNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAME 426

Query: 384 FIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443
            I  +P     I+WR LL +C  + N+ +A++    + EL+    G+YV+LSN+ ++A  
Sbjct: 427 LIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKE 486

Query: 444 WEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKM 503
           W+ V  +R++MK+  + KVPG SSIEV+N V EF +GD  H  S  + + L E+   LK 
Sbjct: 487 WDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEITARLKA 546

Query: 504 VGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            GY P T+ V   D +++EKE AL +HSEKLAI FGLL+T PG+TIR+VKNLRVC
Sbjct: 547 NGYAPLTASVLQ-DFDEKEKENALAHHSEKLAIAFGLLSTAPGSTIRIVKNLRVC 600


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/561 (37%), Positives = 323/561 (57%), Gaps = 49/561 (8%)

Query: 6   SPPITQSPPPKLCTNT-PNA-----LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKL 59
           S PI QSP      N  P +     + LL    S   L+Q+HA  IKT+    +  LT++
Sbjct: 40  SFPIPQSPNRNQIHNVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRV 99

Query: 60  INFCTQNPTTSSMEHAHLLFDRIPE--PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSG 117
              C   P   S  +A  +F  + +  P+  ++N+  +  +   +PI AI LF  L    
Sbjct: 100 GLVCAFTP---SFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYD 156

Query: 118 LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEA 177
           + PD ++  S+L+AC  +    L  G+ LH    K+G  S                    
Sbjct: 157 VCPDTFTCSSVLRAC--LNLLDLSNGRILHGVVEKVGFRS-------------------- 194

Query: 178 ARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL 237
                          + ++I  Y +  +  EA+ LF +++E  +K  +VT+++ L++CA 
Sbjct: 195 ---------------WTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACAD 239

Query: 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297
           LG+LDLG  IHEY  ++G  + V+++  LIDM+ KCG L++A  VF+ M  +   +WSAM
Sbjct: 240 LGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAM 299

Query: 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG 357
           I   A HG+  +++ +F +M +  + P+ +TF+GLL+ACSH GL+ EG  +F SM   YG
Sbjct: 300 IGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYG 359

Query: 358 IVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
           I+P I+HYGCMVDLL RAG L EA+ FI  +P+K   ++W  LL +C  H N+ +A++ I
Sbjct: 360 IIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAI 419

Query: 418 ERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREF 477
           + + ELD  + G YV+LSN+ A AGRWED   +RK MKDR V K PG SSI V+ VV EF
Sbjct: 420 KHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEF 479

Query: 478 FSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAIT 537
            +G+  H  +  + +  +EL++E+++ GYVP+TS+V   D+E+ EK   +  HSEKLA+ 
Sbjct: 480 VAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLL-DIEEGEKVKFVSRHSEKLALV 538

Query: 538 FGLLNTPPGTTIRVVKNLRVC 558
           FGL+NTP  T IR++KNLR+C
Sbjct: 539 FGLMNTPAETPIRIMKNLRIC 559


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/569 (35%), Positives = 333/569 (58%), Gaps = 39/569 (6%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           +S+L  CT F  +KQ+HA  I+  L     VLTKLI   T+        +  L+F ++  
Sbjct: 46  MSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMG-SYPLLVFGQVNY 104

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
           P+  L+  M RGY+       +   +  +   G+ P  ++F +L KAC    A  ++ GK
Sbjct: 105 PNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACG--AALNMDLGK 162

Query: 145 QLHCFAIKLG-LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN--------- 194
           Q+H   I +G   S+LYV  ++I+LY +C  +  AR++F+ +SE  VVS+          
Sbjct: 163 QVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKY 222

Query: 195 ----------------------AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232
                                 A++T YA++ RP EAL  F+++Q+  ++  +VT+   +
Sbjct: 223 GDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVI 282

Query: 233 SSCALLGSLDLGKWIHEYIKK--YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290
           S+CA LG++    WI +  ++  +G    V V +ALIDM++KCG  D+A  VF+ M  ++
Sbjct: 283 SACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERN 342

Query: 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350
             ++S+MI+ YA HG+ H ++ +F +M+K ++ P+++TF+G+L ACSH GLV++G   F 
Sbjct: 343 VFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFA 402

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
            M   +G+ P   HY CMVDLLGRAG L+EA   +  +P++    +W  LL +C  H N 
Sbjct: 403 KMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNP 462

Query: 411 GLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIE- 469
            +A+     +F+L+ +  G+Y++LSN+ A AGRWE+V  LRK+++++G  K PGCS  E 
Sbjct: 463 DIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEG 522

Query: 470 VNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRY 529
            N  + +FF+GD  H  S+++++AL +L++ L+  GY P+     + D+ D+EKE  L  
Sbjct: 523 KNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPY-DLTDDEKERILMS 581

Query: 530 HSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           HSEKLA+ +GLL T  G TI+++KN+R+C
Sbjct: 582 HSEKLALAYGLLCTEAGDTIKIMKNIRIC 610



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 107/256 (41%), Gaps = 24/256 (9%)

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           F +LQ +  K  +  ++S L  C L   +   K +H +I + GL +   V T LI M  K
Sbjct: 31  FPQLQHQR-KLLEWRLMSILHDCTLFSQI---KQVHAHIIRNGLSQCSYVLTKLIRMLTK 86

Query: 273 CGRLDDAVS-----VFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
              +D  +      VF  ++  +   W+AMI  YA  G   +S   +  M +  V P   
Sbjct: 87  ---VDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSF 143

Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
           TF  L  AC     +D G           G    +     M+DL  + G L  A +  DE
Sbjct: 144 TFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDE 203

Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC---ARAGR- 443
           +  +   + W  L+ + + + ++  A  +       DD    D V  + +    A+ GR 
Sbjct: 204 MSERDV-VSWTELIVAYAKYGDMESASGL------FDDLPSKDMVAWTAMVTGYAQNGRP 256

Query: 444 WEDVDYLRKLMKDRGV 459
            E ++Y +K M+D G+
Sbjct: 257 KEALEYFQK-MQDVGM 271


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/509 (40%), Positives = 309/509 (60%), Gaps = 11/509 (2%)

Query: 55  VLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL 114
           +  KLI  C  +   +++  A L+F  +  P+I   N   +  +++     AI  F   +
Sbjct: 26  IAVKLIGACADH---ANVRQAALIFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQV 82

Query: 115 NS--GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172
           +S     PD+++F S+LKACA  G   +  G+++H    K G  SNL+V  +LI++Y + 
Sbjct: 83  SSPNAPNPDEFTFTSVLKACA--GLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKA 140

Query: 173 SDVEAARRIFEN--ISEPCVVSYNAIITAYARSSRPNEALSLFRELQE-RNLKPTDVTML 229
             +  AR +F+   + +  VV +NA+I  YA++ + ++A+ +FR +Q+   + P DVT++
Sbjct: 141 GYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLV 200

Query: 230 SALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK 289
           S L +CA LG+LDLGKWI  +I +  +   + +  AL DM+AKCG + +A  VF+ M  +
Sbjct: 201 SVLPACAHLGALDLGKWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEER 260

Query: 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYF 349
           D  +WS +I   A +G   ++   F EM+     P+++ F+GLL AC+H GLV +G N F
Sbjct: 261 DVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCF 320

Query: 350 YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
            +M  +YG+ P ++HYGC+VDLL RAG LD+A   I  +P+K   I+W  LL  C  + +
Sbjct: 321 NTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRD 380

Query: 410 LGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIE 469
            G  ++V++ I ELD  H G YV L+N+ +  GR +D    R  M++ GVLK PGCS IE
Sbjct: 381 SGRGQRVVQHILELDSDHSGSYVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSWIE 440

Query: 470 VNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRY 529
           V+N V EFF GD  H  S  +   + EL+ ++K+ GY P T LV H  +++EEKE AL  
Sbjct: 441 VDNTVHEFFMGDLSHPESNKIYSMIRELMWKMKLAGYKPKTDLVVH-SIDEEEKEDALSI 499

Query: 530 HSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           HSEKLAI FGL++T  GTTIRVVKNLR+C
Sbjct: 500 HSEKLAIAFGLISTSEGTTIRVVKNLRIC 528


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/497 (40%), Positives = 306/497 (61%), Gaps = 13/497 (2%)

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKT----PIRA-IFLFVELLNSGLLPDDYSF 125
           S  H  L F   P  +  L+NT+ R + +++     P  + I +FV +   G+ PD ++F
Sbjct: 9   SSTHPTLHFSH-PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTF 67

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
           P LL++ A      L  G+ +H   ++ GL  + +V T+LI++Y+    V+ AR +F  +
Sbjct: 68  PFLLQSFA--SPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVM 125

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFRELQE---RNLKPTDVTMLSALSSCALLGSLD 242
            E  V+S++ +I  Y R  +  EAL+LFRE+Q     +++P + TM   L++C  LG+L+
Sbjct: 126 PERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALE 185

Query: 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAY 301
            GKW H YI K G+   V + TALIDM+AKCG ++ A  VF N+   KD  AWSAMI   
Sbjct: 186 HGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGL 245

Query: 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG 361
           A HG   + + +F +M+   V P+ +TFL +  AC H GLV EG +Y   M + Y I+P 
Sbjct: 246 AMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPT 305

Query: 362 IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421
           I+HYGCMVDL GRAGR+ EA+  +  +P++   ++W  LLS    H ++   +  ++++ 
Sbjct: 306 IQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLI 365

Query: 422 ELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGD 481
           EL+ ++ G YV+LSN+ A+ GRWEDV ++R LM+  G+ KVPGCS IEV  V+ EFF GD
Sbjct: 366 ELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGD 425

Query: 482 GVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLL 541
             H  +  +   L+E+++ LK+ GYV +T  V   D+++E KE+AL  HSEKLA+ +G L
Sbjct: 426 DSHPETRQIHMMLEEILERLKVEGYVGNTKEVLL-DLDEEGKELALSLHSEKLALAYGFL 484

Query: 542 NTPPGTTIRVVKNLRVC 558
            T PGT IR+VKNLR+C
Sbjct: 485 KTSPGTPIRIVKNLRIC 501


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/522 (38%), Positives = 318/522 (60%), Gaps = 7/522 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +++H   ++  L+ +  V T L+    +      +  A ++FDR+PE ++V +  +  GY
Sbjct: 168 QKVHMEIVEAGLELEPRVGTSLVGMYAK---CGDISKARVIFDRLPEKNVVTWTLLIAGY 224

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           ++      A+ L   +  + + P+  +F S+L+ C      ALE GK++H + I+ G   
Sbjct: 225 AQQGQVDVALELLETMQQAEVAPNKITFASILQGCTT--PAALEHGKKVHRYIIQSGYGR 282

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            L+V  +LI +Y +C  +E AR++F ++    VV++ A++T YA+    +EA++LFR +Q
Sbjct: 283 ELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQ 342

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           ++ +KP  +T  S L+SC+    L  GK IH+ +   G +  V + +AL+ M+AKCG +D
Sbjct: 343 QQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMD 402

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAY-ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           DA  VF+ MS ++  AW+A+I    A HG+  +++  F++M K  + PD++TF  +L AC
Sbjct: 403 DASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSAC 462

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           +H GLV+EG  +F SM   YGI P ++HY C VDLLGRAG L+EA   I  +P    P +
Sbjct: 463 THVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSV 522

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
           W  LLS+C  H+++   ++  E + +LD    G YV LS++ A AGR+ED + +R++M+ 
Sbjct: 523 WGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEK 582

Query: 457 RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHG 516
           R V+K PG S IEV+  V  F   D  H  S  +   L +L +++K +GYVPDT  V H 
Sbjct: 583 RDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVELGKLTEQIKEMGYVPDTRFVLH- 641

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           D+++E+KE  L  HSE+LAIT+GL+ TPPG  IR+VKNLRVC
Sbjct: 642 DVDEEQKERILFSHSERLAITYGLMKTPPGMPIRIVKNLRVC 683



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 196/396 (49%), Gaps = 12/396 (3%)

Query: 26  SLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
            LL  C   R L+Q   +HA  +K+ +Q +  +   L++   +     S+  A  +FD I
Sbjct: 52  GLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAK---CGSLTDARRVFDSI 108

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
            + +IV +  M   +      + A   +  +  +G  PD  +F SLL A      E L+ 
Sbjct: 109 RDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAF--TNPELLQL 166

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G+++H   ++ GL     V T+L+ +YA+C D+  AR IF+ + E  VV++  +I  YA+
Sbjct: 167 GQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQ 226

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
             + + AL L   +Q+  + P  +T  S L  C    +L+ GK +H YI + G  + + V
Sbjct: 227 QGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWV 286

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
             +LI M+ KCG L++A  +F ++  +D   W+AM+  YA  G   ++I +F  M +  +
Sbjct: 287 VNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGI 346

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            PD++TF  +L +CS    + EG    +      G    +     +V +  + G +D+A 
Sbjct: 347 KPDKMTFTSVLTSCSSPAFLQEG-KRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDAS 405

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
              +++  ++  + W  +++ C + +  G  ++ +E
Sbjct: 406 LVFNQMSERNV-VAWTAIITGCCAQH--GRCREALE 438



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 160/294 (54%), Gaps = 9/294 (3%)

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
           F  LL+ CA +   +LE+G+++H   +K G+  N Y+  TL+++YA+C  +  ARR+F++
Sbjct: 50  FRGLLQECARL--RSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDS 107

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
           I +  +VS+ A+I A+   ++  EA   +  ++    KP  VT +S L++      L LG
Sbjct: 108 IRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLG 167

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
           + +H  I + GL+   +V T+L+ M+AKCG +  A  +FD +  K+   W+ +I  YA  
Sbjct: 168 QKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQ 227

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIK 363
           GQ   ++ + E M +A+V+P++ITF  +L  C+    ++ G   + Y ++  YG    + 
Sbjct: 228 GQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWV- 286

Query: 364 HYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
               ++ +  + G L+EA +   +LP +   + W  ++   + +  LG   + I
Sbjct: 287 -VNSLITMYCKCGGLEEARKLFSDLPHRDV-VTWTAMV---TGYAQLGFHDEAI 335



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 107/222 (48%), Gaps = 2/222 (0%)

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           ++   ++ R  EAL +   +  +  +         L  CA L SL+ G+ +H  I K G+
Sbjct: 19  VSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 78

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
                +   L+ M+AKCG L DA  VFD++  ++  +W+AMI A+    +  ++   +E 
Sbjct: 79  QPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYET 138

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M  A   PD++TF+ LL A ++  L+  G      + +  G+    +    +V +  + G
Sbjct: 139 MKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEA-GLELEPRVGTSLVGMYAKCG 197

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
            + +A    D LP K+  + W  L++  +    + +A +++E
Sbjct: 198 DISKARVIFDRLPEKNV-VTWTLLIAGYAQQGQVDVALELLE 238


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/540 (37%), Positives = 321/540 (59%), Gaps = 6/540 (1%)

Query: 19  TNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLL 78
           T     L+ +     +R    I  +  K  L +D+ VLT LI+  ++   +       +L
Sbjct: 215 TTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCK---GRIL 271

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
           FD+I +PD++ +N M  GY+ +     A+ LF ELL SG   +  +   L+     +   
Sbjct: 272 FDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVY--LPFN 329

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
            L+  + +   ++K+G+     V T L  +Y   ++V+ AR++F+   E  + S+NA+I+
Sbjct: 330 HLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMIS 389

Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
            Y ++   + A+SLF+E+  + L P  VT+ S LS+CA LG+L +GKW+H  IK   L+ 
Sbjct: 390 GYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLES 448

Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
            V V+TAL+DM+AKCG + +A  +FD M  K+   W+AMI  Y  HG G +++ +F EM+
Sbjct: 449 NVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEML 508

Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
           ++ + P  +TFL +LYACSH+GLV EG   F+SM + YG  P  +HY CMVD+LGRAG+L
Sbjct: 509 QSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQL 568

Query: 379 DEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438
             A  FI+ +P++  P +W  LL +C  H N  +A    +R+F+LD  + G YV+LSN+ 
Sbjct: 569 TNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIY 628

Query: 439 ARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELV 498
           +    +     +R+++K R + K PGC+ IE+++    F SGD  H  +T + + L++L 
Sbjct: 629 STDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLT 688

Query: 499 KELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +++  GY  +T      D+EDEEKE+ +  HSEKLAI FGL++T PGT IR++KNLRVC
Sbjct: 689 GKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVC 748



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 119/457 (26%), Positives = 219/457 (47%), Gaps = 34/457 (7%)

Query: 17  LCTNTPNA--------LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPT 68
           +CTNT  +        L+LL   T+   L QI A  I   +  DL+ +TKL +   +   
Sbjct: 2   ICTNTATSAIRGQRFFLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTH---KFFD 58

Query: 69  TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN-SGLLPDDYSFPS 127
             ++ H   LF+++ +PD+ LFN + RG+S +  P  +IFL+  L   + L PD++++  
Sbjct: 59  LGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTY-- 116

Query: 128 LLKACACVGAEALEE---GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
              A A   A  LE+   G  LH  +I  G+ SNL+V + +++LY + +  E AR++F+ 
Sbjct: 117 ---AFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDV 173

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
           + E   V +N +I+ ++R+S   +++ +F ++ +  L     T+ + L++ A L    LG
Sbjct: 174 MPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLG 233

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
             I     K GL   V V T LI +++KCG+      +FD +   D  +++AMI  Y  +
Sbjct: 234 MGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFN 293

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLL---YACSHTGLVDEGWNYFYSMRDKYGIVPG 361
            +   ++ +F E++ +    +  T +GL+      +H  L         ++  K GI+  
Sbjct: 294 HETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLS----RLIQNLSLKIGIILQ 349

Query: 362 IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421
                 +  +  R   +  A +  DE P KS    W  ++S  + +   GL  + I    
Sbjct: 350 PSVSTALTTVYCRLNEVQFARQLFDESPEKSLAS-WNAMISGYTQN---GLTDRAISLFQ 405

Query: 422 ELDDSHGGDYVILSNL---CARAGRWEDVDYLRKLMK 455
           E+      + V ++++   CA+ G      ++  L+K
Sbjct: 406 EMMPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIK 442


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/596 (36%), Positives = 342/596 (57%), Gaps = 45/596 (7%)

Query: 1   MATTPSPPITQS-PPPKLCTNTPN----ALSLLPRCTSF-RGLKQIHAVTIKTHLQNDLN 54
           M  +P P I  + P P   ++  N     +SLL +     + ++ IH   IKT    D  
Sbjct: 1   MIISPVPTIIANLPNPHSSSHDSNLRRVIISLLHKNRKNPKHVQSIHCHAIKTRTSQDPF 60

Query: 55  VLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVEL 113
           V  +L+  +C  N     ++HA  LF     P++ L+ ++  G+    +   AI LF ++
Sbjct: 61  VAFELLRVYCKVN----YIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQM 116

Query: 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
           +   +L D+Y+  ++LKAC  V   AL  GK++H   +K GL  +  +   L+ LY +C 
Sbjct: 117 VRKHVLADNYAVTAMLKAC--VLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCG 174

Query: 174 DVEAARRIFENISEPCVVS-------------------------------YNAIITAYAR 202
            +E AR++F+ + E  VV+                               +  +I    R
Sbjct: 175 VLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVR 234

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
           +   N  L +FRE+Q + ++P +VT +  LS+CA LG+L+LG+WIH Y++K G++    V
Sbjct: 235 NGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFV 294

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
             ALI+M+++CG +D+A ++FD +  KD   +++MI   A HG+  +++ +F EM+K +V
Sbjct: 295 AGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERV 354

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            P+ ITF+G+L ACSH GLVD G   F SM   +GI P ++HYGCMVD+LGR GRL+EA+
Sbjct: 355 RPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCMVDILGRVGRLEEAF 414

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
            FI  + +++   +  +LLS+C  H N+G+ ++V + + E      G +++LSN  A  G
Sbjct: 415 DFIGRMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLLSEHYRIDSGSFIMLSNFYASLG 474

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           RW     +R+ M+  G++K PGCSSIEVNN + EFFSGD  H     + K L+EL    K
Sbjct: 475 RWSYAAEVREKMEKGGIIKEPGCSSIEVNNAIHEFFSGDLRHPERKRIYKKLEELNYLTK 534

Query: 503 MVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             GY+P T +  H D++DE+KE+AL  HSE+LAI +GL++T   TT+RV KNLR+C
Sbjct: 535 FEGYLPATEVALH-DIDDEQKELALAVHSERLAICYGLVSTEAYTTLRVGKNLRIC 589


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/544 (38%), Positives = 320/544 (58%), Gaps = 14/544 (2%)

Query: 22  PNA---LSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PNA   + +L  C S   LK   ++HA      L++D+ V T L+    +     S+  A
Sbjct: 127 PNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGK---CGSINEA 183

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
             +FD +   DI+ +  M   Y++S     A  L +++   G  P+  ++ S+L ACA  
Sbjct: 184 RRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASE 243

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
           GA  L+  K++H  A+  GL  ++ V T L+ +YA+   ++ AR +F+ +    VVS+N 
Sbjct: 244 GA--LKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNV 301

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +I A+A   R +EA  LF ++Q    KP  +  LS L++CA  G+L+  K IH +    G
Sbjct: 302 MIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSG 361

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
           L+  V+V TAL+ M++K G +DDA  VFD M  ++  +W+AMI   A HG G  ++ +F 
Sbjct: 362 LEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFR 421

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
            M    V PD +TF+ +L ACSH GLVDEG + + +M   YGI P + H  CMVDLLGRA
Sbjct: 422 RMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRA 481

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
           GRL EA  FID + +      W  LL SC ++ N+ L + V +   +LD  +   YV+LS
Sbjct: 482 GRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYVLLS 541

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           N+ A AG+W+ V ++R +M++RG+ K PG S IEV+N + +F   D  H    ++ ++ D
Sbjct: 542 NIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSSHPECKEINESKD 601

Query: 496 ELVKELKMVGYVPDTSLV-HHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
           ++++++K  GY+PDT LV  + +M+D+E +I    HSEKLAI +GL++TPPG  IRV KN
Sbjct: 602 KVIEKIKAEGYIPDTRLVLKNKNMKDKELDIC--SHSEKLAIVYGLMHTPPGNPIRVFKN 659

Query: 555 LRVC 558
           LRVC
Sbjct: 660 LRVC 663



 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 130/435 (29%), Positives = 231/435 (53%), Gaps = 21/435 (4%)

Query: 17  LCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSME 73
           L T++   + +L RC   + L   KQ+H   IK+ ++ + +V+  L++   +      ++
Sbjct: 24  LITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIE---CGRLQ 80

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
            A  +FD + +     +N M  GY   K    A+ LF E+ + G+ P+  ++  +LKACA
Sbjct: 81  EARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACA 140

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
            +   AL+ GK++H      GL S++ V T L+ +Y +C  +  ARRIF+N+    ++S+
Sbjct: 141 SL--SALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISW 198

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
             +I AYA+S    EA  L  ++++   KP  +T +S L++CA  G+L   K +H +   
Sbjct: 199 TVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALD 258

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
            GL+  V+V TAL+ M+AK G +DDA  VFD M  +D  +W+ MI A+A HG+GH++  +
Sbjct: 259 AGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDL 318

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW-NYFYSMRDKYGIVPGIKHYGCMVDLL 372
           F +M      PD I FL +L AC+  G ++  W    +      G+   ++    +V + 
Sbjct: 319 FLQMQTEGCKPDAIMFLSILNACASAGALE--WVKKIHRHALDSGLEVDVRVGTALVHMY 376

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD-- 430
            ++G +D+A    D + +++  + W  ++S  + H   GL +  +E +F    +HG    
Sbjct: 377 SKSGSIDDARVVFDRMKVRNV-VSWNAMISGLAQH---GLGQDALE-VFRRMTAHGVKPD 431

Query: 431 ---YVILSNLCARAG 442
              +V + + C+ AG
Sbjct: 432 RVTFVAVLSACSHAG 446



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 182/366 (49%), Gaps = 15/366 (4%)

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
           + T   AI + +  L  GL+ D + +  +LK C  +  + L   KQ+H   IK  +  N 
Sbjct: 6   ANTLSEAIVVLMNRLQRGLITDSFMYVEVLKRC--LKQKDLMAAKQVHDCIIKSRMEQNA 63

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
           +V   L+++Y EC  ++ AR +F+ + +    S+NA+I  Y       +A+ LFRE+   
Sbjct: 64  HVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHE 123

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
            ++P   T +  L +CA L +L  GK +H  I+  GL+  V+V TAL+ M+ KCG +++A
Sbjct: 124 GVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEA 183

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
             +FDN+   D  +W+ MI AYA  G G ++  +  +M +    P+ IT++ +L AC+  
Sbjct: 184 RRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASE 243

Query: 340 GLVDEGW-NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
           G +   W    +      G+   ++    +V +  ++G +D+A    D + ++   + W 
Sbjct: 244 GALK--WVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDV-VSWN 300

Query: 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGD-----YVILSNLCARAGRWEDVDYLRKL 453
            ++ + + H   G   +  +   ++  + G       ++ + N CA AG  E V  + + 
Sbjct: 301 VMIGAFAEH---GRGHEAYDLFLQM-QTEGCKPDAIMFLSILNACASAGALEWVKKIHRH 356

Query: 454 MKDRGV 459
             D G+
Sbjct: 357 ALDSGL 362


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/537 (37%), Positives = 325/537 (60%), Gaps = 7/537 (1%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  CT    L   KQ+H+  I+  L  D+ V   L++   +     S++ +  +F+++
Sbjct: 61  SVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQM 120

Query: 83  PEPDIVLFNTMARGYSRS-KTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           PE +++ +  +   Y++S +    AI LF ++++  + P+ +SF S+LKAC  +      
Sbjct: 121 PEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPY-- 178

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G+Q++ +A+KLG+ S   V  +LI++YA    +E AR+ F+ + E  +VSYNAI+  YA
Sbjct: 179 TGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYA 238

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++ +  EA  LF E+ +  +  +  T  S LS  A +G++  G+ IH  + K G      
Sbjct: 239 KNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQC 298

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           +  ALI M+++CG ++ A  VF+ M  ++  +W++MI  +A HG   +++ MF +M++  
Sbjct: 299 ICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETG 358

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
             P+EIT++ +L ACSH G++ EG  +F SM  ++GIVP ++HY CMVDLLGR+G L EA
Sbjct: 359 TKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEA 418

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
             FI+ +P+ +  ++WRTLL +C  H N  L +   E I E +      Y++LSNL A A
Sbjct: 419 MEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASA 478

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           G+W+DV  +RK MK+R ++K  GCS IEV N V  F  G+  H  +  + + LD+L  ++
Sbjct: 479 GQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKI 538

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K +GY+PDT  V H D+E+E+KE  L  HSEK+A+ FGL++T     IR+ KNLRVC
Sbjct: 539 KEMGYIPDTDFVLH-DIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVC 594



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 107/396 (27%), Positives = 208/396 (52%), Gaps = 18/396 (4%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A+ +FD++PE ++V +  M   +++      AI LF+++  SG +PD +++ S+L AC  
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS---DVEAARRIFENISEPCVV 191
           +G  AL  GKQLH   I+LGL  ++ V  +L+++YA+C+    V+ +R++FE + E  V+
Sbjct: 69  LGLLAL--GKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 126

Query: 192 SYNAIITAYARSSR-PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY 250
           S+ AIITAYA+S     EA+ LF ++   +++P   +  S L +C  L     G+ ++ Y
Sbjct: 127 SWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 186

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310
             K G+     V  +LI M+A+ GR++DA   FD +  K+  +++A++  YA + +  ++
Sbjct: 187 AVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEA 246

Query: 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC--- 367
            L+F E+    +     TF  LL   +  G + +G      +     +  G K   C   
Sbjct: 247 FLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL-----LKGGYKSNQCICN 301

Query: 368 -MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
            ++ +  R G ++ A++  +E+  ++  I W ++++  + H     A ++  ++ E    
Sbjct: 302 ALISMYSRCGNIEAAFQVFNEMEDRNV-ISWTSMITGFAKHGFATRALEMFHKMLETGTK 360

Query: 427 -HGGDYVILSNLCARAGRW-EDVDYLRKLMKDRGVL 460
            +   YV + + C+  G   E   +   + K+ G++
Sbjct: 361 PNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIV 396


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/540 (37%), Positives = 321/540 (59%), Gaps = 6/540 (1%)

Query: 19  TNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLL 78
           T     L+ +     +R    I  +  K  L +D+ VLT LI+  ++   +       +L
Sbjct: 215 TTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCK---GRIL 271

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
           FD+I +PD++ +N M  GY+ +     A+ LF ELL SG   +  +   L+     +   
Sbjct: 272 FDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVY--LPFN 329

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
            L+  + +   ++K+G+     V T L  +Y   ++V+ AR++F+   E  + S+NA+I+
Sbjct: 330 HLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMIS 389

Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
            Y ++   + A+SLF+E+  + L P  VT+ S LS+CA LG+L +GKW+H  IK   L+ 
Sbjct: 390 GYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLES 448

Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
            V V+TAL+DM+AKCG + +A  +FD M  K+   W+AMI  Y  HG G +++ +F EM+
Sbjct: 449 NVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEML 508

Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
           ++ + P  +TFL +LYACSH+GLV EG   F+SM + YG  P  +HY CMVD+LGRAG+L
Sbjct: 509 QSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQL 568

Query: 379 DEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438
             A  FI+ +P++  P +W  LL +C  H N  +A    +R+F+LD  + G YV+LSN+ 
Sbjct: 569 TNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIY 628

Query: 439 ARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELV 498
           +    +     +R+++K R + K PGC+ IE+++    F SGD  H  +T + + L++L 
Sbjct: 629 STDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLT 688

Query: 499 KELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +++  GY  +T      D+EDEEKE+ +  HSEKLAI FGL++T PGT IR++KNLRVC
Sbjct: 689 GKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVC 748



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 119/457 (26%), Positives = 219/457 (47%), Gaps = 34/457 (7%)

Query: 17  LCTNTPNA--------LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPT 68
           +CTNT  +        L+LL   T+   L QI A  I   +  DL+ +TKL +   +   
Sbjct: 2   ICTNTATSAIRGQRFFLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTH---KFFD 58

Query: 69  TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN-SGLLPDDYSFPS 127
             ++ H   LF+++ +PD+ LFN + RG+S +  P  +IFL+  L   + L PD++++  
Sbjct: 59  LGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTY-- 116

Query: 128 LLKACACVGAEALEE---GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
              A A   A  LE+   G  LH  +I  G+ SNL+V + +++LY + +  E AR++F+ 
Sbjct: 117 ---AFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDV 173

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
           + E   V +N +I+ ++R+S   +++ +F ++ +  L     T+ + L++ A L    LG
Sbjct: 174 MPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLG 233

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
             I     K GL   V V T LI +++KCG+      +FD +   D  +++AMI  Y  +
Sbjct: 234 MGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFN 293

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLL---YACSHTGLVDEGWNYFYSMRDKYGIVPG 361
            +   ++ +F E++ +    +  T +GL+      +H  L         ++  K GI+  
Sbjct: 294 HETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLS----RLIQNLSLKIGIILQ 349

Query: 362 IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421
                 +  +  R   +  A +  DE P KS    W  ++S  + +   GL  + I    
Sbjct: 350 PSVSTALTTVYCRLNEVQFARQLFDESPEKSLAS-WNAMISGYTQN---GLTDRAISLFQ 405

Query: 422 ELDDSHGGDYVILSNL---CARAGRWEDVDYLRKLMK 455
           E+      + V ++++   CA+ G      ++  L+K
Sbjct: 406 EMMPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIK 442


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/545 (37%), Positives = 323/545 (59%), Gaps = 14/545 (2%)

Query: 19  TNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           T+    +S++  C++   L   + +H   IK     +L +   L++  +++   +S   A
Sbjct: 249 TDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNS---A 305

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
             +F+ + E  +V + +M  GY+R      ++ LF E+   G+ PD ++  ++L ACAC 
Sbjct: 306 IQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACT 365

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
           G   LE GK +H +  +  + S+L+V   L+++YA+C  +  A  +F  +    +VS+N 
Sbjct: 366 GL--LENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNT 423

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +I  Y+++S PNEAL+LF E+Q  N KP  +TM   L +CA L +L+ G+ IH +I + G
Sbjct: 424 MIGGYSKNSLPNEALNLFVEMQ-YNSKPNSITMACILPACASLAALERGQEIHGHILRNG 482

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
                 V  AL+DM+ KCG L  A  +FD +  KD  +W+ MI  Y  HG G ++I  F 
Sbjct: 483 FSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFN 542

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
           EM  + + PDE++F+ +LYACSH+GL+DEGW +F  MR+   I P  +HY C+VDLL RA
Sbjct: 543 EMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARA 602

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
           G L +AY+FI  +PI+    +W  LL  C  ++++ LA++V E +FEL+  + G YV+L+
Sbjct: 603 GNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLA 662

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           N+ A A +WE+V  LR+ +  RG+ K PGCS IE+   V  F +GD  H  +  ++  L 
Sbjct: 663 NIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLK 722

Query: 496 ELVKELKMVGYVPDT--SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVK 553
           +    +K  G+ P    +L+     +D EKE+AL  HSEK+A+ FG+L+ PPG T+RV K
Sbjct: 723 KTRTRMKEEGHFPKMRYALI---KADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTK 779

Query: 554 NLRVC 558
           NLRVC
Sbjct: 780 NLRVC 784



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 188/356 (52%), Gaps = 10/356 (2%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +E A  LFD + + D++ +N+M  GY  +    + + LF ++L  G+  D  +  S++  
Sbjct: 201 VESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAG 260

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C+  G   L  G+ LH +AIK      L +   L+++Y++  ++ +A ++FE + E  VV
Sbjct: 261 CSNTGMLLL--GRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVV 318

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+ ++I  YAR    + ++ LF E+++  + P   T+ + L +CA  G L+ GK +H YI
Sbjct: 319 SWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYI 378

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
           K+  +   + V+ AL+DM+AKCG + DA SVF  M  KD  +W+ MI  Y+ +   ++++
Sbjct: 379 KENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEAL 438

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVD 370
            +F E M+    P+ IT   +L AC+    ++ G   + + +R+ + +   + +   +VD
Sbjct: 439 NLFVE-MQYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVAN--ALVD 495

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
           +  + G L  A    D +P K   + W  +++    H   G   + I    E+ +S
Sbjct: 496 MYLKCGALGLARLLFDMIPEKDL-VSWTVMIAGYGMH---GYGSEAIAAFNEMRNS 547



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 164/349 (46%), Gaps = 55/349 (15%)

Query: 111 VELLNSGLLPDD--YSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINL 168
           +EL+N    PD    ++ S+L+ CA +  +++++G+++H       +  +  + + L+ +
Sbjct: 88  MELINQSPKPDLELRTYCSVLQLCADL--KSIQDGRRIHSIIQSNDVEVDGVLGSKLVFM 145

Query: 169 YAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTD--- 225
           Y  C D+   RRIF+ ++   V  +N ++  YA+     E+LSLF+ ++E  ++  +   
Sbjct: 146 YVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESAR 205

Query: 226 ----------------------------------------------VTMLSALSSCALLG 239
                                                          TM+S ++ C+  G
Sbjct: 206 KLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTG 265

Query: 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIV 299
            L LG+ +H Y  K    K + +N  L+DM++K G L+ A+ VF+ M  +   +W++MI 
Sbjct: 266 MLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIA 325

Query: 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359
            YA  G    S+ +F EM K  +SPD  T   +L+AC+ TGL++ G +    +++   + 
Sbjct: 326 GYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKEN-KMQ 384

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408
             +     ++D+  + G + +A+    E+ +K   + W T++   S ++
Sbjct: 385 SDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDI-VSWNTMIGGYSKNS 432



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/404 (19%), Positives = 169/404 (41%), Gaps = 74/404 (18%)

Query: 167 NLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV 226
           NLY  C+ +  +    E I +  +  YN  I  +        A+ L  +  + +L+    
Sbjct: 46  NLYHSCATIGTSVLPSETI-DCKITDYNIEICRFCELGNLRRAMELINQSPKPDLELR-- 102

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG------------ 274
           T  S L  CA L S+  G+ IH  I+   ++    + + L+ M+  CG            
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162

Query: 275 -------------------------------------RLDDAVSVFDNMSGKDTQAWSAM 297
                                                R++ A  +FD +  +D  +W++M
Sbjct: 163 ANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSM 222

Query: 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKY 356
           I  Y ++G   K + +FE+M+   ++ D  T + ++  CS+TG++  G   + Y+++  +
Sbjct: 223 ISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASF 282

Query: 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQV 416
           G    + +  C++D+  ++G L+ A +  + +  +S  + W ++++  +     GL+   
Sbjct: 283 GKELTLNN--CLLDMYSKSGNLNSAIQVFETMGERSV-VSWTSMIAGYARE---GLSDMS 336

Query: 417 IERIFELD-DSHGGDYVILSNL---CARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNN 472
           +    E++ +    D   ++ +   CA  G  E+   +   +K+  +      S + V+N
Sbjct: 337 VRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQ-----SDLFVSN 391

Query: 473 VVREFFSGDG----VHSYSTDLQKALDELVKELKMVGYVPDTSL 512
            + + ++  G     HS  +++Q  + ++V    M+G     SL
Sbjct: 392 ALMDMYAKCGSMGDAHSVFSEMQ--VKDIVSWNTMIGGYSKNSL 433


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/546 (37%), Positives = 318/546 (58%), Gaps = 14/546 (2%)

Query: 18  CT--NTPNALSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSM 72
           CT  +T   L +LP     + L+   QIH++  KT   +   VLT  I+  ++      +
Sbjct: 216 CTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSK---CGKI 272

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
           + A  LF     PDIV +N M  GY+ +     ++ LF EL+ SG      +  SL+   
Sbjct: 273 KMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVS 332

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
                  L     +H +++K    S+  V T L  +Y++ +++E+AR++F+   E  + S
Sbjct: 333 G-----HLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPS 387

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +NA+I+ Y ++    +A+SLFRE+Q     P  VT+   LS+CA LG+L LGKW+H+ ++
Sbjct: 388 WNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVR 447

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
               +  + V+TALI M+AKCG + +A  +FD M  K+   W+ MI  Y  HG G +++ 
Sbjct: 448 STDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALT 507

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           +F EM+ + ++P  +TFL +LYACSH GLV EG   F SM  +YG  P +KHY C+VD+L
Sbjct: 508 IFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDIL 567

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432
           GRAG L  A +FI+ +PI+  P +W TLL +C  H +  LA+ V E++FELD  + G +V
Sbjct: 568 GRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHV 627

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
           +LSN+ +    +     +R+  K R + K PG + IE+      F SGD  H     + +
Sbjct: 628 LLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHE 687

Query: 493 ALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVV 552
            L++L  +++  GY P+T L  H D+E+EE+E+ ++ HSE+LAI FGL+ T PGT IR++
Sbjct: 688 KLEKLEGKMREAGYQPETELALH-DVEEEERELMVKVHSERLAIAFGLIATEPGTEIRII 746

Query: 553 KNLRVC 558
           KNLRVC
Sbjct: 747 KNLRVC 752



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 197/409 (48%), Gaps = 21/409 (5%)

Query: 23  NALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           N L L  R TS   L Q HA  +    +ND+++LTKL    +      ++ +A  +F  +
Sbjct: 22  NFLDLFKRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSD---LGAIYYARDIFLSV 78

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS-GLLPDDYSFPSLLKACACVGAEALE 141
             PD+ LFN + RG+S +++P  ++ +F  L  S  L P+  ++   + A +  G     
Sbjct: 79  QRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAAS--GFRDDR 136

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G  +H  AI  G +S L + + ++ +Y +   VE AR++F+ + E   + +N +I+ Y 
Sbjct: 137 AGCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYR 196

Query: 202 RSSRPNEALSLFRELQERNLKPTD-VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
           ++    E++ +FR+L   +    D  T+L  L + A L  L LG  IH    K G   + 
Sbjct: 197 KNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHD 256

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            V T  I +++KCG++  A ++F      D  A++AMI  Y ++G+   S+ +F+E+M +
Sbjct: 257 YVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLS 316

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
                  T + L+    H  L+     + YS++  +     + H      L     +L+E
Sbjct: 317 GAKLKSSTLVSLVPVSGHLMLIYA--IHGYSLKSNF-----LSHTSVSTALTTVYSKLNE 369

Query: 381 ---AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
              A +  DE P KS P  W  ++S  + +   GL +  I    E+ +S
Sbjct: 370 IESARKLFDESPEKSLPS-WNAMISGYTQN---GLTEDAISLFREMQNS 414


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/550 (38%), Positives = 328/550 (59%), Gaps = 8/550 (1%)

Query: 11  QSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTS 70
           ++  P    ++P    LL        L Q+HA  I +      ++LTKL+N         
Sbjct: 2   ETKQPHKLPHSPAYNFLLQAGPRLYLLHQVHAHIIVSGYGRSRSLLTKLLNLAC---AAG 58

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKT-PIRAIFLFVELLNSGLLPDDYSFPSLL 129
           S+ +   +F  +P PD  LF ++ +  S+S    I +++ +  ++ S + P +Y+F S++
Sbjct: 59  SISYTRQIFLAVPNPDSFLFTSLIKSTSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVI 118

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC 189
           K+CA +   AL+ G+ +H   +  G   ++YV   L+ LY +C D+  AR++F+ I E  
Sbjct: 119 KSCADL--SALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARKVFDKIRERS 176

Query: 190 VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           +V++N++I+ Y ++    EA+ LF  ++E  ++P   T +S LS+CA LG+  LG W+HE
Sbjct: 177 IVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHE 236

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
           YI   GLD  V + T+LI+M+ +CG +  A  VFD+M  ++  AW+AMI  Y T+G G +
Sbjct: 237 YIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQ 296

Query: 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369
           ++ +F EM +  + P+ ITF+ +L AC+H GLV+EG   F S+R++Y +VPG++H  C+V
Sbjct: 297 AVELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHLVPGVEHNVCLV 356

Query: 370 DLLGRAGRLDEAYRFI-DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428
           D+LGRAG LDEAY FI +E+P    P +   +L +C  H N  L  QV E +   +  + 
Sbjct: 357 DMLGRAGLLDEAYNFIKEEIPENPAPAILTAMLGACKMHKNFDLGAQVAEHLLAAEPENP 416

Query: 429 GDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYST 488
             YVILSN+ A AGR + V+ +R  M  + + K  G S++EV+     F  GD  HS + 
Sbjct: 417 AHYVILSNIYALAGRMDQVEIVRNNMIRKCLKKQVGYSTVEVDQKTYLFSMGDKSHSETN 476

Query: 489 DLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTT 548
            +   LDEL+ +    GYVP +  V H ++E+EE+E ALRYHSEKLAI FGLL T  GT 
Sbjct: 477 AIYHYLDELMWKCSEAGYVPVSDSVMH-ELEEEEREYALRYHSEKLAIAFGLLKTSHGTP 535

Query: 549 IRVVKNLRVC 558
           IR+VKNLR+C
Sbjct: 536 IRIVKNLRMC 545


>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/536 (39%), Positives = 330/536 (61%), Gaps = 10/536 (1%)

Query: 27  LLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPD 86
           LL +C+SF  +KQ+ A  I     +  +  TKL+  C  + +   + +A  +F  IP P 
Sbjct: 7   LLQKCSSFSQIKQLQANLIINGDFHFSSSRTKLLELCAIS-SFGDLSYALHIFRYIPYPS 65

Query: 87  IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP--DDYSFPSLLKACACVGAEALEEGK 144
              +N + RG + S  P  A+F +  +  S  L   D  +    LKACA   A A  E  
Sbjct: 66  TNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACA--RALARSEAI 123

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           QLH   ++ G N+++ + TTL++ YA+  D++ A+++F+ + +P + S+NA+I  +A+ S
Sbjct: 124 QLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGS 183

Query: 205 RPNEALSLFRELQ-ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
           RP +A+  F+ ++ + NL+P  VT+  AL +C+ LG+L  G+ +H+YI +  L+  V+V 
Sbjct: 184 RPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLNSNVQVC 243

Query: 264 TALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
             +IDM+AKCG +D A  VF+NM   K    W+ MI+A+A HG GHK++ +FE++ ++ +
Sbjct: 244 NVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGM 303

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
           SPD +++L +L AC+H GLV++G   F SM  + G+ P IKHYG MVDLLGRAGRL EAY
Sbjct: 304 SPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQR-GLEPNIKHYGSMVDLLGRAGRLKEAY 362

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
             +  LP  +  +LW+TLL +C ++ ++ +A+    ++ E+     GD+V+LSN+ A   
Sbjct: 363 DIVSSLPFPNM-VLWQTLLGACRTYGDVEMAELASRKLVEMGFISCGDFVLLSNVYAARQ 421

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           RW+DV  +R  M+ R V K PG S IE+   + +F +GD  HS   ++   LDE+   +K
Sbjct: 422 RWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAKLDEINLRIK 481

Query: 503 MVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             GY  DTS V H D+ DE+KE AL YHSEKLA+ FGL  T  GT I+V+KNLR+C
Sbjct: 482 AYGYSADTSNVLH-DIGDEDKENALCYHSEKLAVAFGLTCTEEGTPIQVIKNLRIC 536


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/500 (38%), Positives = 297/500 (59%), Gaps = 6/500 (1%)

Query: 59  LINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118
           LI  C +N    S   A  LFD++P  ++  +N M  G +       ++  F+ +   G+
Sbjct: 114 LIGGCIKNGDLGS---ARELFDKMPTRNVATWNAMVAGLTNVGLDEDSLQFFLAMRREGM 170

Query: 119 LPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAA 178
            PD++   S+ + CA  G   +  G+Q+H + ++ G++S++ V  +L ++Y  C  +   
Sbjct: 171 HPDEFGLGSVFRCCA--GLLDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEG 228

Query: 179 RRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL 238
             +   +    +VS+N  I    ++     AL  F  ++   + P  VT +SA+S C+ L
Sbjct: 229 EAVLRALPSLTIVSFNTTIAGRTQNGDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDL 288

Query: 239 GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMI 298
            +L  G+ +H  + K G+DK V V T+L+ M+++CG L D+  V+D   G D    SAMI
Sbjct: 289 AALAQGQQVHAQVIKAGVDKVVPVITSLVHMYSRCGCLGDSERVYDGYCGLDLFLLSAMI 348

Query: 299 VAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGI 358
            A   HGQGHK++ +F++MM     P+E+TFL LLYACSH+GL DEG  +F  M   YG 
Sbjct: 349 SACGFHGQGHKAVELFKQMMNGGAEPNEVTFLALLYACSHSGLKDEGLEFFELMTKTYGF 408

Query: 359 VPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
            P +KHY C+VDLLGR+G LDEA   I  +P+++  ++W+TLLS+C +  N  +A+++ E
Sbjct: 409 QPSVKHYNCIVDLLGRSGCLDEAEALILSMPVRADGVIWKTLLSACKTQKNFDMAERIAE 468

Query: 419 RIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFF 478
           R+ E D      YV+LSN+ A + RW DV  +RK+M+++ + K PG S +E    V +F 
Sbjct: 469 RVIESDPRDSAPYVLLSNIRATSKRWGDVTEVRKIMREKDIRKEPGVSWVEHKGQVHQFC 528

Query: 479 SGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITF 538
           +GD  H    ++ + L E++ +++  GY PD ++V H DMEDEEKE++L +HSEKLAI F
Sbjct: 529 TGDKSHPRQGEIDEYLKEMMGKIRQCGYAPDMTMVFH-DMEDEEKEVSLTHHSEKLAIAF 587

Query: 539 GLLNTPPGTTIRVVKNLRVC 558
             LN P G  IRV+KNLRVC
Sbjct: 588 AFLNLPEGVPIRVMKNLRVC 607



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 142/354 (40%), Gaps = 51/354 (14%)

Query: 100 SKTPIRAIFLFVELLNSGLLPD------------DYS-FPSLLKACACVGAEALEEGKQL 146
           S  P  A   F+ L +SG L D            D S F  + +AC      A+   +QL
Sbjct: 10  STGPREAKDEFIRLCSSGRLKDALHHPFRGVLWSDASLFSHIFRAC-----RAIPLLRQL 64

Query: 147 HCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRP 206
           H FA   G  ++ +    L+  YA+  D+  AR +FE IS+  V+S+N +I    ++   
Sbjct: 65  HAFAATSGAAADRFTTNNLLLAYADLGDLPTARHLFEGISKRNVMSWNILIGGCIKNGDL 124

Query: 207 NEALSLFRELQERN-------------------------------LKPTDVTMLSALSSC 235
             A  LF ++  RN                               + P +  + S    C
Sbjct: 125 GSARELFDKMPTRNVATWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGLGSVFRCC 184

Query: 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWS 295
           A L  +  G+ +H Y+ + G+D  + V  +L  M+ +CG L +  +V   +      +++
Sbjct: 185 AGLLDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFN 244

Query: 296 AMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355
             I     +G    ++  F  M   +V+PD +TF+  +  CS    + +G    ++   K
Sbjct: 245 TTIAGRTQNGDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQG-QQVHAQVIK 303

Query: 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
            G+   +     +V +  R G L ++ R  D         L   ++S+C  H  
Sbjct: 304 AGVDKVVPVITSLVHMYSRCGCLGDSERVYDGY-CGLDLFLLSAMISACGFHGQ 356



 Score = 42.4 bits (98), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 87/214 (40%), Gaps = 38/214 (17%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +Q+HA  IK  +   + V+T L++  ++       E    ++D     D+ L + M    
Sbjct: 295 QQVHAQVIKAGVDKVVPVITSLVHMYSRCGCLGDSER---VYDGYCGLDLFLLSAMISAC 351

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
                  +A+ LF +++N G  P++ +F +LL AC+  G +  +EG  L  F +      
Sbjct: 352 GFHGQGHKAVELFKQMMNGGAEPNEVTFLALLYACSHSGLK--DEG--LEFFEL------ 401

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
                  +   Y                 +P V  YN I+    RS   +EA +L   + 
Sbjct: 402 -------MTKTYG---------------FQPSVKHYNCIVDLLGRSGCLDEAEALILSMP 439

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
              ++   V   + LS+C    + D+ + I E +
Sbjct: 440 ---VRADGVIWKTLLSACKTQKNFDMAERIAERV 470


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/547 (37%), Positives = 318/547 (58%), Gaps = 10/547 (1%)

Query: 16  KLCTNTPNALSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSM 72
           K+  N    +S+LP C     LK    IH  T+K  + +DL+  T L++   +    ++ 
Sbjct: 425 KMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTA- 483

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
             A   F+R+   DIV +N++  GY++   P  AI +F +L  S + PD  +   ++ AC
Sbjct: 484 --ALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPAC 541

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS-EPCVV 191
           A +    L++G  +H   +KLG  S+ +V   LI++YA+C  + +A  +F         V
Sbjct: 542 ALL--NDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEV 599

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           ++N II AY ++    EA+S F +++  N  P  VT +S L + A L +   G   H  I
Sbjct: 600 TWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACI 659

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            + G      V  +LIDM+AKCG+L  +  +F+ M  KDT +W+AM+  YA HG G ++I
Sbjct: 660 IQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAI 719

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +F  M ++QV  D ++F+ +L AC H GLV+EG   F+SM DKY I P ++HY CMVDL
Sbjct: 720 ALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDL 779

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
           LGRAG  DE   FI  +P++    +W  LL SC  H+N+ L +  ++ + +L+  +   +
Sbjct: 780 LGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHF 839

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           V+LS++ A++GRW D    R  M D G+ K PGCS +E+ N V  F  GD  H     + 
Sbjct: 840 VVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMH 899

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
              + L+++++ +GYVPD S V   ++E+E+KE+ L  HSE+LAITF LLNTPPG+TI++
Sbjct: 900 LLWNTLLEKMEKIGYVPDRSCVLQ-NVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQI 958

Query: 552 VKNLRVC 558
           VKNLRVC
Sbjct: 959 VKNLRVC 965



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 195/369 (52%), Gaps = 8/369 (2%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +FD++ + D V + TM  GY+ +   +  + LF ++    +  +  S  S   A A 
Sbjct: 282 ARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAA- 340

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
                LE+GK++H  A++  ++S++ V T L+ +YA+C + E A+++F  +    +V+++
Sbjct: 341 -ETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWS 399

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           AII A  ++  P EALSLF+E+Q + +KP  VT++S L +CA L  L LGK IH +  K 
Sbjct: 400 AIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKA 459

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
            +D  +   TAL+ M+AKCG    A++ F+ MS +D   W+++I  YA  G  + +I MF
Sbjct: 460 DMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMF 519

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
            ++  + ++PD  T +G++ AC+    +D+G    + +  K G          ++D+  +
Sbjct: 520 YKLRLSAINPDAGTMVGVVPACALLNDLDQG-TCIHGLIVKLGFESDCHVKNALIDMYAK 578

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE--LDDSHGGDYV 432
            G L  A    ++       + W  ++   +++   G AK+ I    +  L++ H     
Sbjct: 579 CGSLPSAEFLFNKTDFTKDEVTWNVII---AAYMQNGHAKEAISSFHQMRLENFHPNSVT 635

Query: 433 ILSNLCARA 441
            +S L A A
Sbjct: 636 FVSVLPAAA 644



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 178/327 (54%), Gaps = 8/327 (2%)

Query: 19  TNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLL 78
           TN  +   LL  C     L QIHA  I +  ++  + +T LIN  +        + A  +
Sbjct: 30  TNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHH-HSITHLINLYS---LFHKCDLARSV 85

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
           FD  P P  +L+N+M R Y+RSK    A+ ++  ++  GL PD Y+F  +LK  AC GA 
Sbjct: 86  FDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLK--ACTGAL 143

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
            L+EG   H    + GL  ++++   L+++Y++  D++ AR +F+ + +  VV++NA+I 
Sbjct: 144 NLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIA 203

Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
             ++S  P EA+  FR +Q   ++P+ V++L+       L +++L + IH Y+  +  D 
Sbjct: 204 GLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYV--FRRDF 261

Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
              V+  LID+++KCG +D A  VFD M  +D  +W  M+  YA +G   + + +F++M 
Sbjct: 262 SSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMK 321

Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEG 345
              V  ++++ +    A + T  +++G
Sbjct: 322 LGNVRINKVSAVSAFLAAAETIDLEKG 348



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 166/326 (50%), Gaps = 18/326 (5%)

Query: 27  LLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           +L  CT    L++    H    +  L+ D+ +   L++  ++      ++ A  +FD++P
Sbjct: 135 VLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSK---MGDLKRAREVFDKMP 191

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYS----FPSLLKACACVGAEA 139
           + D+V +N M  G S+S+ P  A+  F  +   G+ P   S    FP + K         
Sbjct: 192 KRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKL------SN 245

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
           +E  + +H +  +   +S   V   LI+LY++C DV+ ARR+F+ + +   VS+  ++  
Sbjct: 246 IELCRSIHGYVFRRDFSSA--VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAG 303

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
           YA +    E L LF +++  N++   V+ +SA  + A    L+ GK IH    +  +D  
Sbjct: 304 YAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSD 363

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           + V T L+ M+AKCG  + A  +F  + G+D  AWSA+I A    G   +++ +F+EM  
Sbjct: 364 ILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQN 423

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEG 345
            ++ P+ +T + +L AC+   L+  G
Sbjct: 424 QKMKPNRVTLMSILPACADLSLLKLG 449



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 144/308 (46%), Gaps = 19/308 (6%)

Query: 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
           L+S    +   +P LL +C     + L    Q+H   I  G   + +  T LINLY+   
Sbjct: 24  LSSSTYTNYLHYPRLLSSC-----KHLNPLLQIHAQIIVSGFKHH-HSITHLINLYSLFH 77

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
             + AR +F++   P  + +N++I AY RS + NEAL ++  + E+ L+P   T    L 
Sbjct: 78  KCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLK 137

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
           +C    +L  G W H  I + GL++ V +   L+DM++K G L  A  VFD M  +D  A
Sbjct: 138 ACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVA 197

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL---LYACSHTGLVDEGWNYFY 350
           W+AMI   +      +++  F  M    V P  ++ L L   +   S+  L      Y +
Sbjct: 198 WNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVF 257

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
                  +  G      ++DL  + G +D A R  D++ +    + W T+++   +HN  
Sbjct: 258 RRDFSSAVSNG------LIDLYSKCGDVDVARRVFDQM-VDQDDVSWGTMMAG-YAHN-- 307

Query: 411 GLAKQVIE 418
           G   +V+E
Sbjct: 308 GCFVEVLE 315


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/537 (37%), Positives = 325/537 (60%), Gaps = 7/537 (1%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  CT    L   KQ+H+  I+  L  D+ V   L++   +     S++ +  +F+++
Sbjct: 56  SVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQM 115

Query: 83  PEPDIVLFNTMARGYSRS-KTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           PE +++ +  +   Y++S +    AI LF ++++  + P+ +SF S+LKAC  +      
Sbjct: 116 PEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPY-- 173

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G+Q++ +A+KLG+ S   V  +LI++YA    +E AR+ F+ + E  +VSYNAI+  YA
Sbjct: 174 TGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYA 233

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++ +  EA  LF E+ +  +  +  T  S LS  A +G++  G+ IH  + K G      
Sbjct: 234 KNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQC 293

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           +  ALI M+++CG ++ A  VF+ M  ++  +W++MI  +A HG   +++ MF +M++  
Sbjct: 294 ICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETG 353

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
             P+EIT++ +L ACSH G++ EG  +F SM  ++GIVP ++HY CMVDLLGR+G L EA
Sbjct: 354 TKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEA 413

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
             FI+ +P+ +  ++WRTLL +C  H N  L +   E I E +      Y++LSNL A A
Sbjct: 414 MEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASA 473

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           G+W+DV  +RK MK+R ++K  GCS IEV N V  F  G+  H  +  + + LD+L  ++
Sbjct: 474 GQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKI 533

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K +GY+PDT  V H D+E+E+KE  L  HSEK+A+ FGL++T     IR+ KNLRVC
Sbjct: 534 KEMGYIPDTDFVLH-DIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVC 589



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/396 (27%), Positives = 208/396 (52%), Gaps = 18/396 (4%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A+ +FD++PE ++V +  M   +++      AI LF+++  SG +PD +++ S+L AC  
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS---DVEAARRIFENISEPCVV 191
           +G  AL  GKQLH   I+LGL  ++ V  +L+++YA+C+    V+ +R++FE + E  V+
Sbjct: 64  LGLLAL--GKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 121

Query: 192 SYNAIITAYARSSR-PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY 250
           S+ AIITAYA+S     EA+ LF ++   +++P   +  S L +C  L     G+ ++ Y
Sbjct: 122 SWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 181

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310
             K G+     V  +LI M+A+ GR++DA   FD +  K+  +++A++  YA + +  ++
Sbjct: 182 AVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEA 241

Query: 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC--- 367
            L+F E+    +     TF  LL   +  G + +G      +     +  G K   C   
Sbjct: 242 FLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL-----LKGGYKSNQCICN 296

Query: 368 -MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
            ++ +  R G ++ A++  +E+  ++  I W ++++  + H     A ++  ++ E    
Sbjct: 297 ALISMYSRCGNIEAAFQVFNEMEDRNV-ISWTSMITGFAKHGFATRALEMFHKMLETGTK 355

Query: 427 -HGGDYVILSNLCARAGRW-EDVDYLRKLMKDRGVL 460
            +   YV + + C+  G   E   +   + K+ G++
Sbjct: 356 PNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIV 391


>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
          Length = 593

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/572 (37%), Positives = 344/572 (60%), Gaps = 35/572 (6%)

Query: 1   MATTPSPPITQSPPPKLCTNTPN------ALSLLPRCTSFRGLKQIHAVTIKT---HLQN 51
           +A   +PP   S  P   +N+ +       L  L  CT    LKQ+HA TI+T   H  N
Sbjct: 3   LAAVIAPP---SHLPHAISNSDSFTHHRRLLLFLNSCTCISQLKQLHAQTIRTTSSHHPN 59

Query: 52  DLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIR-AIFLF 110
              + +++++F     +   + +A  +F +I  P+  ++N + R  +RS    + AI L+
Sbjct: 60  TFFLYSRILHF----SSLHDLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALY 115

Query: 111 VELLNSG-LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLY 169
             +L  G ++ D ++FP +LKACA + A  L EG+Q+H   +KLG +S++Y+  +L++ Y
Sbjct: 116 HRMLEQGSVMQDKHTFPFVLKACAYLFA--LSEGEQIHAQILKLGFDSDVYINNSLVHFY 173

Query: 170 AECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTML 229
           A C  ++ A+ +F+ +SE  +VS+N +I A+ R    + AL+LF E+Q +  +P   T+ 
Sbjct: 174 ATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQ-KFFEPDGYTIQ 232

Query: 230 SALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK 289
           S  ++CA +GSL LG           +   V +NT+L+DM+ KCG L+ A+ +F  M  +
Sbjct: 233 SIANACAGMGSLSLG-----------IVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKR 281

Query: 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDEITFLGLLYACSHTGLVDEGWNY 348
           D  +W++MI+ ++THG+   ++  F  M++ + + P+ ITF+G+L AC+H GLV EG  Y
Sbjct: 282 DVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRY 341

Query: 349 FYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408
           F  M  +Y I P ++HYGC+VDLL RAG +DEA   +  +P++   ++WR+LL +C   N
Sbjct: 342 FDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQN 401

Query: 409 -NLGLAKQVIERIFELDDSH-GGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCS 466
             + L++++  R+ E +     G YV+LS + A A RW DV  +RKLM D+GV+K PGCS
Sbjct: 402 AGVELSEEMARRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCS 461

Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
           SIE++ V  EFF+GD  H  + ++  ALD + + ++ VGY PD+S     D   + K+ +
Sbjct: 462 SIEIDGVAHEFFAGDTSHPQTEEIYSALDVIEERVERVGYSPDSSQAPMVDETIDGKQYS 521

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           LR HSE+LAI FGLL T PG  IR+ KNLRVC
Sbjct: 522 LRLHSERLAIAFGLLKTKPGMPIRIFKNLRVC 553


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/543 (39%), Positives = 321/543 (59%), Gaps = 22/543 (4%)

Query: 25  LSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           +S+L  C +   L   + +H   +K     ++     L++  ++     ++  A  +F +
Sbjct: 300 VSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSK---CGNLNGATEVFVK 356

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           + +  IV + ++   Y R      AI LF E+ + G+ PD Y+  S++ ACAC  + +L+
Sbjct: 357 MGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACAC--SSSLD 414

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           +G+ +H + IK G+ SNL V   LIN+YA+C  VE AR +F  I    +VS+N +I  Y+
Sbjct: 415 KGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYS 474

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++  PNEAL LF ++Q +  KP D+TM   L +CA L +LD G+ IH +I + G    + 
Sbjct: 475 QNLLPNEALELFLDMQ-KQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLH 533

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V  AL+DM+AKCG L  A  +FD +  KD  +W+ MI  Y  HG G+++I  F EM  A 
Sbjct: 534 VACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAG 593

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           + PDE +F  +L ACSH+GL++EGW +F SMR++ G+ P ++HY C+VDLL R G L +A
Sbjct: 594 IEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKA 653

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
           Y+FI+ +PIK    +W  LLS C  H+++ LA++V E IFEL+  +   YV+L+N+ A A
Sbjct: 654 YKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEA 713

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
            +WE+V  LRK M+ RG  + PGCS IEV      F +G+  H  +  +   L +L  ++
Sbjct: 714 EKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKKIDVLLSKLTMQM 773

Query: 502 K------MVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNL 555
           +      M  YV    L++  DM   EKE+    HSEK A+ FG+LN PPG T+RV KN 
Sbjct: 774 QNEDYSSMFRYV----LINEDDM---EKEMIQCGHSEKSAMAFGILNLPPGRTVRVSKNR 826

Query: 556 RVC 558
           RVC
Sbjct: 827 RVC 829



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 204/400 (51%), Gaps = 8/400 (2%)

Query: 9   ITQSPPPKLCTNT-PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNP 67
           +T+S   +L  N+  + L L     S    K++H+V I   +  D  +  KL+ F   N 
Sbjct: 84  LTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLV-FMYVN- 141

Query: 68  TTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPS 127
               +     +FD+I    + L+N +   Y++      ++ LF ++   G++ + Y+F  
Sbjct: 142 -CGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTC 200

Query: 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE 187
           +LK  A +G   ++E K++H + +KLG  SN  V  +LI  Y +   VE+A  +F+ +SE
Sbjct: 201 VLKCFAALGK--VKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSE 258

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
           P VVS+N++I     +      L +F ++    ++    T++S L +CA +G+L LG+ +
Sbjct: 259 PDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRAL 318

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQG 307
           H +  K    + V  +  L+DM++KCG L+ A  VF  M      +W+++I AY   G  
Sbjct: 319 HGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLY 378

Query: 308 HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367
             +I +F+EM    V PD  T   +++AC+ +  +D+G +  +S   K G+   +     
Sbjct: 379 SDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRD-VHSYVIKNGMGSNLPVTNA 437

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
           ++++  + G ++EA     ++P+K   + W T++   S +
Sbjct: 438 LINMYAKCGSVEEARLVFSKIPVKDI-VSWNTMIGGYSQN 476


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/557 (36%), Positives = 327/557 (58%), Gaps = 27/557 (4%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQ----------------- 65
           SLL   T F+     + +HA  I+     DL     L+N  ++                 
Sbjct: 81  SLLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHN 140

Query: 66  --NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDY 123
             N  +  ++    LFDR+P  D+V +NT+  G +++     A+ +  E+    L PD +
Sbjct: 141 HNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSF 200

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           +  S+L          + +GK++H +AI+ G + ++++ ++LI++YA+C+ VE +   F 
Sbjct: 201 TLSSILPIF--TEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFH 258

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
            +S    +S+N+II    ++ R ++ L  FR + +  +KP  V+  S + +CA L +L+L
Sbjct: 259 LLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNL 318

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN--MSGKDTQAWSAMIVAY 301
           GK +H YI + G D    + ++L+DM+AKCG +  A  +F+   M  +D  +W+A+I+  
Sbjct: 319 GKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGC 378

Query: 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG 361
           A HG    ++ +FEEM+   V P  + F+ +L ACSH GLVDEGW YF SM+  +G+ PG
Sbjct: 379 AMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPG 438

Query: 362 IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421
           ++HY  + DLLGRAGRL+EAY FI  +  + T  +W TLL++C +H N+ LA++V+ +I 
Sbjct: 439 LEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKIL 498

Query: 422 ELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGD 481
            +D  + G +VI+SN+ + A RW D   LR  M+  G+ K P CS IEV N V  F +GD
Sbjct: 499 LVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGD 558

Query: 482 GVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLL 541
             H Y   + +AL+ L+++++  GYV DT+ V H D+++E K   LR HSE+LAI FG++
Sbjct: 559 KSHPYYDKINEALNILLEQMEKEGYVLDTNEVLH-DVDEEHKRDLLRTHSERLAIAFGII 617

Query: 542 NTPPGTTIRVVKNLRVC 558
           +T  GTTIRV+KN+RVC
Sbjct: 618 STTSGTTIRVIKNIRVC 634



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 108/446 (24%), Positives = 209/446 (46%), Gaps = 38/446 (8%)

Query: 49  LQNDLNVLTKLI-NFCTQNPTTSSME-HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRA 106
           + +  NV+  L+ N  T  PT    + HA ++      P  + +  + + Y+       +
Sbjct: 1   MSSSQNVMRSLLRNPNTVVPTCHVKQLHAQIVKTTKATPHSLAWICIIKCYASHGLLRHS 60

Query: 107 IFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI 166
           +  F  L + G+ PD + FPSLL+A      +     + LH   I+LG + +LY    L+
Sbjct: 61  LASFNLLRSFGISPDRHLFPSLLRASTLF--KHFNLAQSLHAAVIRLGFHFDLYTANALM 118

Query: 167 NLYAE----------------------CSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           N+Y++                         +++ R++F+ +    VVS+N +I   A++ 
Sbjct: 119 NMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNG 178

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
              EAL++ +E+ + NL+P   T+ S L       ++  GK IH Y  ++G DK V + +
Sbjct: 179 MYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGS 238

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
           +LIDM+AKC +++ +V  F  +S +D  +W+++I     +G+  + +  F  M+K +V P
Sbjct: 239 SLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKP 298

Query: 325 DEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
            +++F  ++ AC+H   ++ G   + Y +R  +     I     ++D+  + G +  A  
Sbjct: 299 MQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIA--SSLLDMYAKCGNIKMARY 356

Query: 384 FIDELPIKSTPIL-WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL---CA 439
             +++ +    ++ W  ++  C+ H +   A  + E +  L D     YV    +   C+
Sbjct: 357 IFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEM--LVDGVKPCYVAFMAVLTACS 414

Query: 440 RAGRW-EDVDYLRKLMKDRGVLKVPG 464
            AG   E   Y   + +D GV   PG
Sbjct: 415 HAGLVDEGWKYFNSMQRDFGV--APG 438


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/490 (40%), Positives = 298/490 (60%), Gaps = 9/490 (1%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +E A  LFD +P  ++  +N M  G + S     ++  F  +   G+ PD+Y   SL + 
Sbjct: 16  LETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRC 75

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS---DVEAARRIFENISEP 188
           CA  G   +  G+Q+H + ++ GL+ ++ V ++L ++Y  C    D EAA R   +++  
Sbjct: 76  CA--GLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLN-- 131

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
            +VS N  I+   ++     AL  F  ++   ++   VT +SA++SC+ L +L  G+ IH
Sbjct: 132 -IVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIH 190

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
               K G+DK V V T+L+ M+++CG L D+  V    SG D    SAMI AY  HG G 
Sbjct: 191 ALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQ 250

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
           K++ +F++MM A   P+E+TFL LLYACSH+GL DEG N F  M   YG+ P +KHY C+
Sbjct: 251 KAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCI 310

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428
           VDLLGR+G L+EA   I  +P++   ++W+TLLS+C +     +A+++ ER+ ELD    
Sbjct: 311 VDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHDS 370

Query: 429 GDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYST 488
             YV+LSN+ A + RWEDV  +R+ M+++ V K PG S +E+   + +F +GD  HS   
Sbjct: 371 ASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQR 430

Query: 489 DLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTT 548
           ++ + L+E++  ++  GY PD S+V H DMEDEEKE++L +HSEKLAI F  L+ P G  
Sbjct: 431 EIVECLEEMMTRIRQCGYAPDMSMVFH-DMEDEEKEVSLAHHSEKLAIAFAFLSLPEGVP 489

Query: 549 IRVVKNLRVC 558
           IRV+KNLRVC
Sbjct: 490 IRVMKNLRVC 499



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 120/257 (46%), Gaps = 6/257 (2%)

Query: 165 LINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT 224
           LI  Y +  D+E AR++F+ +    V ++NA++     S    E+L  F  ++   ++P 
Sbjct: 6   LIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPD 65

Query: 225 DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFD 284
           +  + S    CA L  +  G+ +H Y+ + GLD+ + V ++L  M+ +CG L D  +   
Sbjct: 66  EYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALR 125

Query: 285 NMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDE 344
            +   +  + +  I     +G    ++  F  M  A V  + +TF+  + +CS    + +
Sbjct: 126 ALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQ 185

Query: 345 GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSC 404
           G    +++  K G+   +     +V +  R G L ++ R   E    +  +L   ++S+ 
Sbjct: 186 G-QQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYS-GTDLVLCSAMISAY 243

Query: 405 SSHNN----LGLAKQVI 417
             H +    +GL KQ++
Sbjct: 244 GFHGHGQKAVGLFKQMM 260



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 128/316 (40%), Gaps = 56/316 (17%)

Query: 19  TNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
            N    +S +  C+    L   +QIHA+ IKT +   + V+T L++  ++       E  
Sbjct: 165 ANAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERV 224

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
            L +      D+VL + M   Y       +A+ LF +++ +G  P++ +F +LL AC+  
Sbjct: 225 CLEY---SGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHS 281

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
           G +  +EG  ++CF +             +   Y                 +P V  Y  
Sbjct: 282 GLK--DEG--MNCFEL-------------MTKTYG---------------LQPSVKHYTC 309

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           I+    RS   NEA  L   +    ++P  V   + LS+C      D+ + I E + +  
Sbjct: 310 IVDLLGRSGCLNEAEDLILSMP---VQPDGVIWKTLLSACKTQKKFDMAERIAERVIE-- 364

Query: 256 LDKYVKVNTALI-DMHAKCGRLDDAVSVFDNMSGKDTQ-----AW---SAMIVAYATHGQ 306
           LD +   +  L+ ++ A   R +D   V + M  ++ +     +W      I  + T  +
Sbjct: 365 LDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDE 424

Query: 307 GHKS----ILMFEEMM 318
            H      +   EEMM
Sbjct: 425 SHSRQREIVECLEEMM 440


>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 591

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/527 (40%), Positives = 310/527 (58%), Gaps = 7/527 (1%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           L+QIHAV ++T L  + +V     +    +     + ++  +F +   P +   NTM R 
Sbjct: 27  LRQIHAVLLRTSLIRNSDVFHHFFSRLALSLIPRDINYSCRVFSQRLNPTLSHCNTMIRA 86

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           +S S+TP     LF  L  +   P +    S    C C+ +  L  G Q+H      G  
Sbjct: 87  FSLSQTPCEGFRLFRALRRNISFPANPLSSSFALKC-CIKSGDLLGGLQIHGKIFSDGFL 145

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
           S+  + TTL++LY+ C +   A ++F+ I +   VS+N +I+ Y R+ R  + L LF ++
Sbjct: 146 SDSLLMTTLMDLYSTCENSTDACKVFDEIPQRDTVSWNVLISCYLRNKRTRDVLVLFDKM 205

Query: 217 Q---ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273
           +   +R +KP +VT L AL +CA LG+LD GK +H++I + GL   + ++  L+ M+++C
Sbjct: 206 KNDVDRCVKPDNVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRC 265

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
           G +D A  VF+ M  ++  +W+AMI   A +G G ++I  F EM+K  +SP+E T  GLL
Sbjct: 266 GSMDKAYEVFNRMRERNVVSWTAMISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLL 325

Query: 334 YACSHTGLVDEGWNYFYSMRD-KYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
            ACSH+GLVDEG  +F  MR  ++ I P + HYGC+VDLLGRA  LD+AY  I  + +K 
Sbjct: 326 SACSHSGLVDEGMMFFDRMRSGEFKIKPNLHHYGCIVDLLGRARLLDKAYSLIKSMEMKP 385

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452
              +WRTLL +C  H N+ L ++VI  + E      GDYV+L N  +  G+WE V  LR 
Sbjct: 386 DSTIWRTLLGACRVHGNVELGERVIAHLIEFKAEEAGDYVLLLNTYSSVGKWEKVTELRS 445

Query: 453 LMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPD-TS 511
           LMK + +   PGCS+IE+   V EF   D  H    ++ K L E+ ++LK+ GYV + TS
Sbjct: 446 LMKKKRIQTNPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGYVAEITS 505

Query: 512 LVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +H+ D E EEK  ALRYHSEKLAI FG+L TPP TTIRV KNLR C
Sbjct: 506 ELHNLDSE-EEKGYALRYHSEKLAIAFGILVTPPETTIRVTKNLRTC 551


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/489 (40%), Positives = 302/489 (61%), Gaps = 8/489 (1%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           ++ A L+FD +    +V + ++   Y+R      AI LF E+   G+ PD ++  ++L A
Sbjct: 49  LDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHA 108

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           CAC G+  LE GK +H +  +  + SN++VC  L+++YA+C  +E A  +F  +    ++
Sbjct: 109 CACNGS--LENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDII 166

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+N +I  Y+++S PNEALSLF ++    +KP   T+   L +CA L SLD GK +H +I
Sbjct: 167 SWNTMIGGYSKNSLPNEALSLFGDMV-LEMKPDGTTLACILPACASLASLDRGKEVHGHI 225

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            + G     +V  AL+DM+ KCG    A  +FD +  KD   W+ MI  Y  HG G+ +I
Sbjct: 226 LRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAI 285

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
             F EM +A + PDE++F+ +LYACSH+GL+DEGW +F  M+D+  + P ++HY C+VDL
Sbjct: 286 TTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDL 345

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
           L R+G+L  AY+FI  +PI+    +W  LLS C  H+++ LA++V E +FEL+  + G Y
Sbjct: 346 LARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYY 405

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           V+L+N  A A +WE+V  LR+ +  RG+ K PGCS IEV + V  F +G+  H  +  ++
Sbjct: 406 VLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIE 465

Query: 492 KALDELVKELKMVGYVPDT--SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTI 549
             L  L  ++K  GY P T  +L++   +   +KE AL  HSEKLA+ FG+LN PP  TI
Sbjct: 466 VLLKRLRSKMKEEGYFPKTRYALINADSL---QKETALCGHSEKLAMAFGILNLPPARTI 522

Query: 550 RVVKNLRVC 558
           RV KNLRVC
Sbjct: 523 RVSKNLRVC 531



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 153/282 (54%), Gaps = 7/282 (2%)

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS 186
           S+L+ACA  G  +L  G+ +H   +K  ++     C TL+++YA+C  ++ A  +F+ +S
Sbjct: 3   SILQACANCGDVSL--GRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 187 EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW 246
              VV++ ++I AYAR    +EA+ LF E+    + P   T+ + L +CA  GSL+ GK 
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120

Query: 247 IHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ 306
           +H YI++  +   + V  AL+DM+AKCG ++DA SVF  M  KD  +W+ MI  Y+ +  
Sbjct: 121 VHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSL 180

Query: 307 GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHY 365
            ++++ +F +M+  ++ PD  T   +L AC+    +D G   + + +R+  G     +  
Sbjct: 181 PNEALSLFGDMV-LEMKPDGTTLACILPACASLASLDRGKEVHGHILRN--GFFSDQQVA 237

Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
             +VD+  + G    A    D +P K   I W  +++    H
Sbjct: 238 NALVDMYVKCGVPVLARLLFDMIPTKDL-ITWTVMIAGYGMH 278



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 163/337 (48%), Gaps = 13/337 (3%)

Query: 33  SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNT 92
           S    K +H    +  +Q+++ V   L++   +     SME A+ +F  +P  DI+ +NT
Sbjct: 114 SLENGKDVHNYIRENDMQSNIFVCNALMDMYAK---CGSMEDANSVFLEMPVKDIISWNT 170

Query: 93  MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
           M  GYS++  P  A+ LF +++   + PD  +   +L ACA +   +L+ GK++H   ++
Sbjct: 171 MIGGYSKNSLPNEALSLFGDMVLE-MKPDGTTLACILPACASLA--SLDRGKEVHGHILR 227

Query: 153 LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL 212
            G  S+  V   L+++Y +C     AR +F+ I    ++++  +I  Y      N A++ 
Sbjct: 228 NGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITT 287

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEYIKKYGLDKYVKVNTALIDMHA 271
           F E+++  ++P +V+ +S L +C+  G LD G ++ +    +  +   ++    ++D+ A
Sbjct: 288 FNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLA 347

Query: 272 KCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           + G+L  A     +M  + D   W A++     H     +  + E +   ++ P+   + 
Sbjct: 348 RSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVF--ELEPENTGYY 405

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367
            LL   ++T    E W     +R K G     K+ GC
Sbjct: 406 VLL---ANTYAEAEKWEEVKKLRQKIGRRGLKKNPGC 439



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 2/181 (1%)

Query: 228 MLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS 287
           M+S L +CA  G + LG+ +H    K  +         L+DM+AKCG LD A+ VFD MS
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 288 GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN 347
            +    W+++I AYA  G   ++I +F EM +  VSPD  T   +L+AC+  G ++ G +
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120

Query: 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
               +R+   +   I     ++D+  + G +++A     E+P+K   I W T++   S +
Sbjct: 121 VHNYIREN-DMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDI-ISWNTMIGGYSKN 178

Query: 408 N 408
           +
Sbjct: 179 S 179


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/489 (40%), Positives = 304/489 (62%), Gaps = 5/489 (1%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           M +A  LFD + +P   L+NT+ +GY ++  P +A+ ++ ++ + G+ PD ++FP ++KA
Sbjct: 85  MSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVIKA 144

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           CA +    L  G  +H   +K GL     V T L+ +Y +  ++  A  +F ++ E  +V
Sbjct: 145 CAELAE--LWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLV 202

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           ++NA+I    ++   ++AL  FRE+    +KP  VT++SALS+C  LG L+ G+ I+E+ 
Sbjct: 203 AWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFA 262

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
           ++ G+D  + V+ A +DM AKCG +D A+++FD M  ++  +WS +I  YA +G+  K++
Sbjct: 263 REEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKAL 322

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM--RDKYGIVPGIKHYGCMV 369
            +F  M    V P+ +TFL +L ACSHTG V+EGW YF  M   D   I P  +HY CMV
Sbjct: 323 ALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYACMV 382

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429
           DLLGR+G L+EAY FI  +PI++ P +W  LL +C+ H N+ L + V + +FEL      
Sbjct: 383 DLLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIKLGQHVADLLFELAPEIAS 442

Query: 430 DYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTD 489
            +V+LSN+ A AGRW  V+ +R+ MK +G  KV   SS+E N  +   + GD  H  S  
Sbjct: 443 YHVLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYGGDKSHPQSAS 502

Query: 490 LQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTI 549
           +   L++L+K++K +GY+P+T  V H D+EDEEKE  L  HSEKLAI F L+N  P   I
Sbjct: 503 ILAKLEDLLKQMKSMGYIPETDSVFH-DVEDEEKESTLSTHSEKLAIAFSLINGSPKFPI 561

Query: 550 RVVKNLRVC 558
           RV+KNLR+C
Sbjct: 562 RVMKNLRIC 570


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/568 (37%), Positives = 326/568 (57%), Gaps = 38/568 (6%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           +SLL  CT+ + +KQIHA  +   + N+ +   + +     + TT+ +++A+ L +    
Sbjct: 13  ISLLNSCTTLKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTN-LDYANKLLNHNNN 71

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELL---NSGLLPDDYSFPSLLKACACVGAEALE 141
           P +   N+M R YS+S TP ++   +  +L   N+ L PD+Y+F  L++ CA + A    
Sbjct: 72  PTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHV-- 129

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAE------------------------------ 171
            G  +H   IK G   + +V T L+ +YAE                              
Sbjct: 130 TGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACA 189

Query: 172 -CSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLS 230
            C D++ AR++F+ + E   V++NA+I  YA+  R  EAL +F  +Q   +K  +V+M+ 
Sbjct: 190 KCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVL 249

Query: 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290
            LS+C  L  LD G+W+H Y+++Y +   V + TAL+DM+AKCG +D A+ VF  M  ++
Sbjct: 250 VLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERN 309

Query: 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350
              WS+ I   A +G G +S+ +F +M +  V P+ ITF+ +L  CS  GLV+EG  +F 
Sbjct: 310 VYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFD 369

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
           SMR+ YGI P ++HYG MVD+ GRAGRL EA  FI+ +P++     W  LL +C  + N 
Sbjct: 370 SMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMYKNK 429

Query: 411 GLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEV 470
            L +    +I EL+D + G YV+LSN+ A    WE V  LR+ MK +GV K+PGCS IEV
Sbjct: 430 ELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGVKKLPGCSVIEV 489

Query: 471 NNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYH 530
           +  V EF  GD  H    +++  L+E+ K L++ GYV +T+ V   D+E+EEKE AL  H
Sbjct: 490 DGEVHEFIVGDKSHPRYDEIEMKLEEISKCLRLSGYVANTNPVLF-DIEEEEKEDALSKH 548

Query: 531 SEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           SEK+AI FGL++      IRVV NLR+C
Sbjct: 549 SEKVAIAFGLISLKGVVPIRVVMNLRIC 576


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/549 (38%), Positives = 321/549 (58%), Gaps = 19/549 (3%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP 85
           ++L  C+    LKQ+HA T++T    +   L         + + S + +A  +FD I   
Sbjct: 30  TVLQTCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENH 89

Query: 86  DIVLFNTMARGYSRSKT-PIRAIFLFVELLNSG-LLPDDYSFPSLLKACACVGAEALEEG 143
              ++NT+ R  +   +    A  L+ ++L  G   PD ++FP +LKACA +      EG
Sbjct: 90  SSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFG--FSEG 147

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
           KQ+HC  +K G   ++YV   LI+LY  C  ++ AR++F+ + E  +VS+N++I A  R 
Sbjct: 148 KQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRF 207

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI-KKYGLDKY--V 260
              + AL LFRE+Q R+ +P   TM S LS+CA LGSL LG W H ++ +K  +D    V
Sbjct: 208 GEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDV 266

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM-- 318
            V  +LI+M+ KCG L  A  VF  M  +D  +W+AMI+ +ATHG+  +++  F+ M+  
Sbjct: 267 LVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDK 326

Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
           +  V P+ +TF+GLL AC+H G V++G  YF  M   Y I P ++HYGC+VDL+ RAG +
Sbjct: 327 RENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYI 386

Query: 379 DEAYRFIDELPIKSTPILWRTLLSSC-----SSHNNLGLAKQVIERIFELDDSHG---GD 430
            EA   +  +P+K   ++WR+LL +C     S   +  +A+ +I    + + S+G   G 
Sbjct: 387 TEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGA 446

Query: 431 YVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDL 490
           YV+LS + A A RW DV  +RKLM + G+ K PGCSSIE+N +  EFF+GD  H  +  +
Sbjct: 447 YVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQI 506

Query: 491 QKALDELVKELKMVGYVPDTSLVHHGD-MEDEEKEIALRYHSEKLAITFGLLNTPPGTTI 549
            + L  +   L+ +GY+PD S     D   D  KE +LR HSE+LAI FGL+N PP T I
Sbjct: 507 YQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPI 566

Query: 550 RVVKNLRVC 558
           R+ KNLRVC
Sbjct: 567 RIFKNLRVC 575


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/550 (39%), Positives = 320/550 (58%), Gaps = 19/550 (3%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
            SL   C+    LKQ+HA T++T    +   L         + + S + +A  +FD I  
Sbjct: 109 FSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIEN 168

Query: 85  PDIVLFNTMARGYSRSKT-PIRAIFLFVELLNSG-LLPDDYSFPSLLKACACVGAEALEE 142
               ++NT+ R  +   +    A  L+ ++L  G   PD ++FP +LKACA +      E
Sbjct: 169 HSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFG--FSE 226

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           GKQ+HC  +K G   ++YV   LI+LY  C  ++ AR++F+ + E  +VS+N++I A  R
Sbjct: 227 GKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVR 286

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI-KKYGLDKY-- 259
               + AL LFRE+Q R+ +P   TM S LS+CA LGSL LG W H ++ +K  +D    
Sbjct: 287 FGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMD 345

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM- 318
           V V  +LI+M+ KCG L  A  VF  M  +D  +W+AMI+ +ATHG+  +++  F+ M+ 
Sbjct: 346 VLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVD 405

Query: 319 -KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
            +  V P+ +TF+GLL AC+H G V++G  YF  M   Y I P ++HYGC+VDL+ RAG 
Sbjct: 406 KRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGY 465

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSC-----SSHNNLGLAKQVIERIFELDDSHG---G 429
           + EA   +  +P+K   ++WR+LL +C     S   +  +A+ +I    + + S+G   G
Sbjct: 466 ITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSG 525

Query: 430 DYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTD 489
            YV+LS + A A RW DV  +RKLM + G+ K PGCSSIE+N +  EFF+GD  H  +  
Sbjct: 526 AYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQ 585

Query: 490 LQKALDELVKELKMVGYVPDTSLVHHGD-MEDEEKEIALRYHSEKLAITFGLLNTPPGTT 548
           + + L  +   L+ +GY+PD S     D   D  KE +LR HSE+LAI FGL+N PP T 
Sbjct: 586 IYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTP 645

Query: 549 IRVVKNLRVC 558
           IR+ KNLRVC
Sbjct: 646 IRIFKNLRVC 655


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/537 (37%), Positives = 317/537 (59%), Gaps = 22/537 (4%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNP-----------------TTSSMEHAHLLFDRI 82
           +HA+ I++    D      L+N C + P                  +++ E    +FD +
Sbjct: 71  LHALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEM 130

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA-CVGAEALE 141
            E D V +NT+  G +  K    A+ +  E+   G +PD ++  ++L   A C     ++
Sbjct: 131 LERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECAD---IK 187

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G  +H +AIK G +++++V ++LI++YA C+ ++ + ++F++ S+   V +N+++  YA
Sbjct: 188 RGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYA 247

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++    EAL +FR + +  ++P  VT  S + +   L  L LGK +H Y+ +   +  + 
Sbjct: 248 QNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIF 307

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           ++++LIDM+ KCG +D A  VF+ +   D  +W+AMI+ YA HG   ++ ++FE M    
Sbjct: 308 ISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGN 367

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           V P+ ITFL +L ACSH GLVD GW YF SM ++YG VP ++H   + D LGRAG LDEA
Sbjct: 368 VKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEA 427

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
           Y FI E+ IK T  +W TLL +C  H N  LA++V ++IFEL+    G +VILSN+ + +
Sbjct: 428 YNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSAS 487

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           GRW +   LRK M+ +G+ K P CS IEV N +  F + D  H +   +  AL+   +++
Sbjct: 488 GRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRIIDALNVYSEQM 547

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
              GYVP+   V   D+E+E+K   L  HSEKLAI FG+++TPPGTTIRV+KNLRVC
Sbjct: 548 IRQGYVPNMEDVLQ-DIEEEQKREVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRVC 603



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 174/341 (51%), Gaps = 24/341 (7%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINF---CTQNPTTSSMEHAHLLFDR 81
           L +   C   +    +H   IK    ND+ V + LI+    CTQ      M+++  +FD 
Sbjct: 177 LPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQ------MDYSMKVFDS 230

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
             + D VL+N+M  GY+++ +   A+ +F  +L +G+ P   +F SL+ A   +    L 
Sbjct: 231 FSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNL--SLLR 288

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            GKQLH + I+   N N+++ ++LI++Y +C +V+ ARR+F  I  P +VS+ A+I  YA
Sbjct: 289 LGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYA 348

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEYIKKYGLDKYV 260
                 EA  LF  ++  N+KP  +T L+ L++C+  G +D G K+ +    +YG    +
Sbjct: 349 LHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSL 408

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA-WSAMIVAYATHGQGHKSILMFEEMMK 319
           +   AL D   + G LD+A +    M  K T + WS ++ A       HK+ ++ EE+ K
Sbjct: 409 EHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRV----HKNTVLAEEVAK 464

Query: 320 A--QVSPDEI---TFLGLLYACSHTGLVDEGWNYFYSMRDK 355
              ++ P  +     L  +Y+ S  G  +E      SMR K
Sbjct: 465 KIFELEPKSMGSHVILSNMYSAS--GRWNEAAQLRKSMRIK 503



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 171/366 (46%), Gaps = 35/366 (9%)

Query: 104 IRAIFLFVELLNSGLLPDD---YSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLY 160
           + AI LF+++  + + P      S P+ LK+CA +G   L     LH  AI+ G  ++ +
Sbjct: 29  LHAISLFLQM-RASVAPRSSVPASLPAALKSCAGLGLCTL--AASLHALAIRSGSFADRF 85

Query: 161 VCTTLINLYA--------------------ECSDVEAARRIFENISEPCVVSYNAIITAY 200
               L+NL                      E +  E+ R++F+ + E   VS+N +I   
Sbjct: 86  TANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLERDAVSWNTLILGC 145

Query: 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
           A   R  EALS+ RE+      P   T+ + L   A    +  G  +H Y  K G D  V
Sbjct: 146 AEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDV 205

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            V ++LIDM+A C ++D ++ VFD+ S  D   W++M+  YA +G   +++ +F  M++A
Sbjct: 206 FVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQA 265

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
            V P  +TF  L+ A  +  L+  G   + Y +R ++     I     ++D+  + G +D
Sbjct: 266 GVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFN--DNIFISSSLIDMYCKCGNVD 323

Query: 380 EAYRFIDELPIKSTPIL-WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL- 437
            A R  +   I+S  I+ W  ++   + H     A  + ER+ EL +        L+ L 
Sbjct: 324 IARRVFNG--IQSPDIVSWTAMIMGYALHGPTTEAFVLFERM-ELGNVKPNHITFLAVLT 380

Query: 438 -CARAG 442
            C+ AG
Sbjct: 381 ACSHAG 386


>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/536 (39%), Positives = 329/536 (61%), Gaps = 10/536 (1%)

Query: 27  LLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPD 86
           LL +C+SF  +KQ+ A  I     +  +  TKL+  C  + +   + +A  +F  IP P 
Sbjct: 7   LLQKCSSFSQIKQLQANLIINGDFHFSSSRTKLLELCAIS-SFGDLSYALHIFRYIPYPS 65

Query: 87  IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP--DDYSFPSLLKACACVGAEALEEGK 144
              +N + RG + S  P  A+F +  +  S  L   D  +    LKACA   A A  E  
Sbjct: 66  TNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACA--RALARSEAI 123

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           QLH   ++ G N+++ + TTL++ YA+  D++ A+++F+ + +P + S+NA+I  +A+ S
Sbjct: 124 QLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGS 183

Query: 205 RPNEALSLFRELQ-ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
           RP +A+  F+ ++ + NL+P  VT+  AL +C+ LG+L  G+ +H+YI +  LD  V+V 
Sbjct: 184 RPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLDSNVQVC 243

Query: 264 TALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
             +IDM+AKCG +D A  VF+NM   K    W+ MI+A+A HG GHK++ +FE++ ++ +
Sbjct: 244 NVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGM 303

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
           SPD +++L +L AC+H GLV++G   F SM  + G+ P IKHYG MVDLLGRAGRL EAY
Sbjct: 304 SPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQR-GLEPNIKHYGSMVDLLGRAGRLKEAY 362

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
             +  LP  +  +LW+TLL +C ++ ++ +A+    ++ E+     G +V+LSN+ A   
Sbjct: 363 DIVSSLPFPNM-VLWQTLLGACRTYGDVEMAELASRKLVEMGFISCGXFVLLSNVYAARQ 421

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           RW+DV  +R  M+ R V K PG S IE+   + +F +GD  HS   ++   LDE+   +K
Sbjct: 422 RWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAKLDEINLRIK 481

Query: 503 MVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             GY  DTS V H D+ DE+KE AL YHSEKLA+ FGL  T  GT I+V+KNLR+C
Sbjct: 482 AYGYSADTSNVLH-DIGDEDKENALCYHSEKLAVAFGLTCTEEGTPIQVIKNLRIC 536


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/600 (34%), Positives = 344/600 (57%), Gaps = 52/600 (8%)

Query: 1   MATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLI 60
           +  TP   + Q  P  L       LSL   C++ + ++Q+HA ++KT + N   V ++L+
Sbjct: 2   LKLTPFHSLQQYLPHNL------HLSLFQTCSAPQEVEQLHAFSLKTAIFNHPFVSSRLL 55

Query: 61  NFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP 120
              + +P  + + +A  +FDRI    ++ +NT+ + Y  ++     I LF EL++   LP
Sbjct: 56  ALYS-DPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHE-YLP 113

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           D+++ P ++K CA +G   ++EGKQ+H  A+K+G  S+++V  +L+N+Y++C +++ AR+
Sbjct: 114 DNFTLPCVIKGCARLGV--VQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARK 171

Query: 181 IFENISEPCVV-----------SYNAIITAYARSSRPNEALSLFRELQERNL-------- 221
           +F+ + +  VV           S+NA+I  Y +S   + AL LF ++   +L        
Sbjct: 172 VFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIA 231

Query: 222 -----------------------KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
                                  +P+  T++S LS+ + L  L  G+WIH Y++K G + 
Sbjct: 232 GYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFEL 291

Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
              + T+LI+M+AKCG ++ A++VF  +  K    W+A+IV    HG  + ++ +F EM 
Sbjct: 292 DGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMC 351

Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
           K  + P+ I F+G+L AC+H GLVD+G  YF  M ++Y I P ++HYGC+VD+L RAG L
Sbjct: 352 KTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHL 411

Query: 379 DEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438
           +EA   I+ +PI    ++W +LL    +H  + + +   +R+ E+     G Y++LSN+ 
Sbjct: 412 EEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMY 471

Query: 439 ARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELV 498
           A +G WE V ++R++M  RG  K PGCSS+E    + EF  GD  H  + ++   + E+ 
Sbjct: 472 AASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMK 531

Query: 499 KELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           ++LK VG+VPDT+ V      ++EKE  L  HSE+LAI FGL+N  PG  IR++KNLRVC
Sbjct: 532 EKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVC 591


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/532 (38%), Positives = 313/532 (58%), Gaps = 9/532 (1%)

Query: 32  TSFRGLKQIHAVTIKT-HLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLF 90
           TS     Q+HA  +K+   +     LT L  F   +P    + +AHL+ + +   +    
Sbjct: 4   TSLSQAMQLHAQILKSPDPKKQTRNLTPLFTFAALSPA-GDLTYAHLILNSLSTQNSFFH 62

Query: 91  NTMARGYSRSKTPIRAIFLFVELL--NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHC 148
           NTM R YS++  P +A+ LF+ +L   +   PD +++P LLK+CA +    +  GKQLH 
Sbjct: 63  NTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRV--GKQLHG 120

Query: 149 FAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNE 208
              K GL S+ YV   LI++Y+ C     A ++F  + +  VVS+ ++I  +    R  E
Sbjct: 121 LIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALE 180

Query: 209 ALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALID 268
           A+ LF E+ E  ++P + T++S L +CA  G++ +G+ +   I++  +     V TALID
Sbjct: 181 AIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTALID 240

Query: 269 MHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT 328
           M+AKCG +  A  VFD +  KD  AW+AMI   A HG   +++ +F++M    + PDE T
Sbjct: 241 MYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPDERT 300

Query: 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388
              +L AC + G   EG+ YF SM  KYGI P I+HYGCMVDLL R G LDEA  FI ++
Sbjct: 301 MTAVLSACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKM 360

Query: 389 PIKSTPILWRTLLSSCSSHNNLGLAKQVIER--IFELDDSHGGDYVILSNLCARAGRWED 446
           PI+   +LWRTL+ +   H ++  ++Q+++   + ++D    G YV+L N+ A AG+W D
Sbjct: 361 PIEPDVVLWRTLIWASKVHGDIDRSEQLMKDRGLLKMDSDDCGSYVLLGNVYASAGKWHD 420

Query: 447 VDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGY 506
              +R+LM  +G+ K PGCS IEV+ +V EF +GD  H  +  +   LDE+ + LK  GY
Sbjct: 421 KAKMRELMNQKGLSKPPGCSRIEVDGLVHEFAAGDSGHIEAEKIYAKLDEVEERLKAEGY 480

Query: 507 VPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            P  S V   +++++EK   LR+HSEKLA+ FGL+ T PGT IR+VKNLR C
Sbjct: 481 HPKLSEVLL-EIDNKEKAFQLRHHSEKLAVAFGLIKTSPGTEIRIVKNLRSC 531


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/546 (36%), Positives = 328/546 (60%), Gaps = 9/546 (1%)

Query: 16  KLCTNTPNALSLLPRCTS---FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSM 72
           K+  N    L++LP C+       LK+IH    +     D  V      F       SS+
Sbjct: 396 KVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANA---FVAAYAKCSSL 452

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
           + A  +F  +    +  +N +   ++++  P +++ LF+ +++SG+ PD ++  SLL AC
Sbjct: 453 DCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLAC 512

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
           A +  + L  GK++H F ++ GL  + ++  +L++LY +CS +   + IF+ +    +V 
Sbjct: 513 ARL--KFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVC 570

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +N +IT ++++  P EAL  FR++    +KP ++ +   L +C+ + +L LGK +H +  
Sbjct: 571 WNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFAL 630

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           K  L +   V  ALIDM+AKCG ++ + ++FD ++ KD   W+ +I  Y  HG G K+I 
Sbjct: 631 KAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIE 690

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           +FE M      PD  TFLG+L AC+H GLV EG  Y   M++ YG+ P ++HY C+VD+L
Sbjct: 691 LFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDML 750

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432
           GRAG+L EA + ++E+P +    +W +LLSSC ++ +L + ++V +++ EL+ +   +YV
Sbjct: 751 GRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYV 810

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
           +LSNL A  G+W++V  +R+ MK+ G+ K  GCS IE+  +V  F   DG  S S  +Q+
Sbjct: 811 LLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFLVSDGSLSESKKIQQ 870

Query: 493 ALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVV 552
              +L K++  +GY PDTS V H ++E+E K   L+ HSEKLAI+FGLLNT  GTT+RV 
Sbjct: 871 TWIKLEKKISKIGYKPDTSCVLH-ELEEEGKIKILKSHSEKLAISFGLLNTAKGTTLRVC 929

Query: 553 KNLRVC 558
           KNLR+C
Sbjct: 930 KNLRIC 935



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 174/306 (56%), Gaps = 11/306 (3%)

Query: 38  KQIHAVTIKTH-LQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           +++HA+   +H L+ND+ + T++I          S   +  +FD   E D+ L+N +  G
Sbjct: 112 RKVHALVSASHKLRNDVVLSTRII---AMYSACGSPSDSRGVFDAAKEKDLFLYNALLSG 168

Query: 97  YSRSKTPIRAIFLFVELLN-SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155
           YSR+     AI LF+ELL+ + L PD+++ P + KACA  G   +E G+ +H  A+K G 
Sbjct: 169 YSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACA--GVADVELGEAVHALALKAGG 226

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
            S+ +V   LI +Y +C  VE+A ++FE +    +VS+N+++ A + +    E   +F+ 
Sbjct: 227 FSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKR 286

Query: 216 L---QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           L   +E  L P   TM++ + +CA +G + +G  +H    K G+ + V VN +L+DM++K
Sbjct: 287 LLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSK 346

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDEITFLG 331
           CG L +A ++FD   GK+  +W+ +I  Y+  G       + +EM + + V  +E+T L 
Sbjct: 347 CGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLN 406

Query: 332 LLYACS 337
           +L ACS
Sbjct: 407 VLPACS 412



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 153/304 (50%), Gaps = 9/304 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           + +HA+ +K    +D  V   LI           +E A  +F+ +   ++V +N++    
Sbjct: 215 EAVHALALKAGGFSDAFVGNALI---AMYGKCGFVESAVKVFETMRNRNLVSWNSVMYAC 271

Query: 98  SRSKTPIRAIFLFVELLNS---GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
           S +        +F  LL S   GL+PD  +  +++ ACA VG   +  G  +H  A KLG
Sbjct: 272 SENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGE--VRMGMVVHGLAFKLG 329

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           +   + V  +L+++Y++C  +  AR +F+      VVS+N II  Y++         L +
Sbjct: 330 ITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQ 389

Query: 215 ELQ-ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273
           E+Q E  ++  +VT+L+ L +C+    L   K IH Y  ++G  K   V  A +  +AKC
Sbjct: 390 EMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKC 449

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
             LD A  VF  M GK   +W+A+I A+A +G   KS+ +F  MM + + PD  T   LL
Sbjct: 450 SSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLL 509

Query: 334 YACS 337
            AC+
Sbjct: 510 LACA 513


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/490 (40%), Positives = 298/490 (60%), Gaps = 9/490 (1%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +E A  LFD +P  ++  +N M  G + S     ++  F  +   G+ PD+Y   SL + 
Sbjct: 124 LETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRC 183

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS---DVEAARRIFENISEP 188
           CA  G   +  G+Q+H + ++ GL+ ++ V ++L ++Y  C    D EAA R   +++  
Sbjct: 184 CA--GLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLN-- 239

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
            +VS N  I+   ++     AL  F  ++   ++   VT +SA++SC+ L +L  G+ IH
Sbjct: 240 -IVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIH 298

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
               K G+DK V V T+L+ M+++CG L D+  V    SG D    SAMI AY  HG G 
Sbjct: 299 ALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQ 358

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
           K++ +F++MM A   P+E+TFL LLYACSH+GL DEG N F  M   YG+ P +KHY C+
Sbjct: 359 KAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCI 418

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428
           VDLLGR+G L+EA   I  +P++   ++W+TLLS+C +     +A+++ ER+ ELD    
Sbjct: 419 VDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHDS 478

Query: 429 GDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYST 488
             YV+LSN+ A + RWEDV  +R+ M+++ V K PG S +E+   + +F +GD  HS   
Sbjct: 479 ASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQR 538

Query: 489 DLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTT 548
           ++ + L+E++  ++  GY PD S+V H DMEDEEKE++L +HSEKLAI F  L+ P G  
Sbjct: 539 EIVECLEEMMTRIRQCGYAPDMSMVFH-DMEDEEKEVSLAHHSEKLAIAFAFLSLPEGVP 597

Query: 549 IRVVKNLRVC 558
           IRV+KNLRVC
Sbjct: 598 IRVMKNLRVC 607



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 122/264 (46%), Gaps = 6/264 (2%)

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           N+     LI  Y +  D+E AR++F+ +    V ++NA++     S    E+L  F  ++
Sbjct: 107 NVMSWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMR 166

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              ++P +  + S    CA L  +  G+ +H Y+ + GLD+ + V ++L  M+ +CG L 
Sbjct: 167 REGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLR 226

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           D  +    +   +  + +  I     +G    ++  F  M  A V  + +TF+  + +CS
Sbjct: 227 DGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCS 286

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
               + +G    +++  K G+   +     +V +  R G L ++ R   E    +  +L 
Sbjct: 287 DLAALAQG-QQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYS-GTDLVLC 344

Query: 398 RTLLSSCSSHNN----LGLAKQVI 417
             ++S+   H +    +GL KQ++
Sbjct: 345 SAMISAYGFHGHGQKAVGLFKQMM 368



 Score = 39.3 bits (90), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
           L+  +A  G    A  +F+ +  ++  +W+ +I  Y  +G    +  +F+EM    V+  
Sbjct: 83  LLLAYADLGDFPTARGLFERIPKRNVMSWNILIGGYVKNGDLETARKLFDEMPARNVA-- 140

Query: 326 EITFLGLLYACSHTGLVDEGWNYFYSMR------DKYGIVPGIKHYGCMVDLLGRAGRLD 379
             T+  ++   +++GL +E   +F++MR      D+YG+    +    + D++  +GR  
Sbjct: 141 --TWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCAGLRDVV--SGRQV 196

Query: 380 EAY 382
            AY
Sbjct: 197 HAY 199


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/527 (39%), Positives = 314/527 (59%), Gaps = 19/527 (3%)

Query: 38   KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
            + +H   +K     ++     L++  ++     ++  A  +F ++ +  IV + +    Y
Sbjct: 591  RALHGFGVKACFSEEVVFSNTLLDMYSK---CGNLNGATEVFVKMGDTTIVSWTSTIAAY 647

Query: 98   SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
             R      AI LF E+ + G+ PD Y+  S++ ACAC  + +L++G+ +H + IK G+ S
Sbjct: 648  VREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACAC--SSSLDKGRDVHSYVIKNGMGS 705

Query: 158  NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            NL V   LIN+YA+C  VE AR +F  I    +VS+N +I  Y+++S PNEAL LF ++Q
Sbjct: 706  NLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQ 765

Query: 218  ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
             +  KP D+TM   L +CA L +LD G+ IH +I + G    + V  AL+DM+AKCG L 
Sbjct: 766  -KQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLV 824

Query: 278  DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
             A  +FD +  KD  +W+ MI  Y  HG G+++I  F EM  A + PDE +F  +L ACS
Sbjct: 825  LAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACS 884

Query: 338  HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
            H+GL++EGW +F SMR++ G+ P ++HY C+VDLL R G L +AY+FI+ +PIK    +W
Sbjct: 885  HSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIW 944

Query: 398  RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
              LLS C  H+++ LA++V E IFEL+  +   YV+L+N+ A A +WE+V  LRK M+ R
Sbjct: 945  GVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKR 1004

Query: 458  GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK------MVGYVPDTS 511
            G  + PGCS IEV      F +G+  H  +  +   L +L  +++      M  YV    
Sbjct: 1005 GFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQNEDYFSMFRYV---- 1060

Query: 512  LVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            L++  DM   EKE+    HSEK A+ FG+LN PPG T+RV KN RVC
Sbjct: 1061 LINEDDM---EKEMIQCGHSEKSAMAFGILNLPPGRTVRVSKNQRVC 1104



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/411 (28%), Positives = 209/411 (50%), Gaps = 19/411 (4%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K++H   +K    ++  V+  LI           +E AH LFD + EPD+V +N+M  G 
Sbjct: 490 KRVHGYVLKLGFGSNTAVVNSLI---AAYFKFGGVESAHNLFDELSEPDVVSWNSMINGC 546

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
             +      + +F+++L  G+  D  +  S+L A A +G  +L  G+ LH F +K   + 
Sbjct: 547 VVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSL--GRALHGFGVKACFSE 604

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            +    TL+++Y++C ++  A  +F  + +  +VS+ + I AY R    ++A+ LF E+Q
Sbjct: 605 EVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQ 664

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
            + ++P   T+ S + +CA   SLD G+ +H Y+ K G+   + V  ALI+M+AKCG ++
Sbjct: 665 SKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVE 724

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           +A  VF  +  KD  +W+ MI  Y+ +   ++++ +F +M K Q  PD+IT   +L AC+
Sbjct: 725 EARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQK-QFKPDDITMACVLPACA 783

Query: 338 HTGLVDEGWN-YFYSMRDKYGIVPGIKHYGC-MVDLLGRAGRLDEAYRFIDELPIKSTPI 395
               +D+G   + + +R  Y       H  C +VD+  + G L  A    D +P K   I
Sbjct: 784 GLAALDKGREIHGHILRRGYF---SDLHVACALVDMYAKCGLLVLAQLLFDMIP-KKDLI 839

Query: 396 LWRTLLSSCSSHNNLGLAKQVIERIFELD----DSHGGDYVILSNLCARAG 442
            W  +++    H   G   + I    E+     +     + ++ N C+ +G
Sbjct: 840 SWTVMIAGYGMH---GFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSG 887



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 207/413 (50%), Gaps = 13/413 (3%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  C   + L   K++H+V I   +  D  +  KL+ F   N     +     +FD+I
Sbjct: 374 SVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLV-FMYVN--CGDLVQGRKIFDKI 430

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
               + L+N +   Y++      ++ LF ++   G++ + Y+F  +LK  A +G   ++E
Sbjct: 431 MNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGK--VKE 488

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
            K++H + +KLG  SN  V  +LI  Y +   VE+A  +F+ +SEP VVS+N++I     
Sbjct: 489 CKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVV 548

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
           +      L +F ++    ++    T++S L + A +G+L LG+ +H +  K    + V  
Sbjct: 549 NGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVF 608

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
           +  L+DM++KCG L+ A  VF  M      +W++ I AY   G    +I +F+EM    V
Sbjct: 609 SNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGV 668

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            PD  T   +++AC+ +  +D+G +  +S   K G+   +     ++++  + G ++EA 
Sbjct: 669 RPDIYTVTSIVHACACSSSLDKGRD-VHSYVIKNGMGSNLPVTNALINMYAKCGSVEEAR 727

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
               ++P+K   + W T++   S ++   L  + +E   ++      D + ++
Sbjct: 728 LVFSKIPVKDI-VSWNTMIGGYSQNS---LPNEALELFLDMQKQFKPDDITMA 776


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/552 (38%), Positives = 316/552 (57%), Gaps = 29/552 (5%)

Query: 20  NTPNALSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           ++    ++LP     + +K    I  + +K     D  VLT LI+  ++      ++ A 
Sbjct: 203 DSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSK---CEDVDTAR 259

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSG----------LLPDDYSFP 126
           LLF  I +PD+V +N +  G+S +     A+  F ELL SG          L+P    F 
Sbjct: 260 LLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFG 319

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS 186
            L  AC   G            F +K G      V T L  +Y+  ++++ AR++F+  S
Sbjct: 320 HLHLACCIQG------------FCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESS 367

Query: 187 EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW 246
           E  V ++NA+I+ YA+S     A+SLF+E+      P  VT+ S LS+CA LG+L  GK 
Sbjct: 368 EKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKS 427

Query: 247 IHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ 306
           +H+ IK   L++ + V+TALIDM+AKCG + +A  +FD  S K+T  W+ MI  Y  HG 
Sbjct: 428 VHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGY 487

Query: 307 GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG 366
           G +++ +F EM+     P  +TFL +LYACSH GLV EG   F++M +KY I P  +HY 
Sbjct: 488 GDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYA 547

Query: 367 CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
           CMVD+LGRAG+L++A  FI ++P++  P +W TLL +C  H +  LA+   ER+FELD  
Sbjct: 548 CMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERLFELDPG 607

Query: 427 HGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSY 486
           + G YV+LSN+ +    +     +R+ +K R + K PGC+ IEVN     F  GD  HS 
Sbjct: 608 NVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCGDRSHSQ 667

Query: 487 STDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPG 546
           +T +   L+EL  +++ +GY  +T    H D+E+EEKE+    HSEKLAI FGL+ T PG
Sbjct: 668 TTSIYAKLEELTGKMREMGYQSETVTALH-DVEEEEKELMFNVHSEKLAIAFGLITTEPG 726

Query: 547 TTIRVVKNLRVC 558
           T IR++KNLRVC
Sbjct: 727 TEIRIIKNLRVC 738



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 190/363 (52%), Gaps = 9/363 (2%)

Query: 40  IHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           +HA  +     ++L V + L++ +C      S + +A  +FD++P+ D VL+NTM  G  
Sbjct: 125 LHAHAVVDGFDSNLFVASALVDLYCK----FSRVAYARKVFDKMPDRDTVLWNTMITGLV 180

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
           R+     ++ +F +++  G+  D  +  ++L A A    + ++ G  + C A+KLG + +
Sbjct: 181 RNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVA--EMQEVKVGMGIQCLALKLGFHFD 238

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
            YV T LI+++++C DV+ AR +F  I +P +VSYNA+I+ ++ +     A+  FREL  
Sbjct: 239 DYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLV 298

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
              + +  TM+  +   +  G L L   I  +  K G      V+TAL  ++++   +D 
Sbjct: 299 SGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDL 358

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A  +FD  S K   AW+AMI  YA  G    +I +F+EMM  + +P+ +T   +L AC+ 
Sbjct: 359 ARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQ 418

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
            G +  G +    ++ K  +   I     ++D+  + G + EA +  D    K+T + W 
Sbjct: 419 LGALSFGKSVHQLIKSK-NLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNT-VTWN 476

Query: 399 TLL 401
           T++
Sbjct: 477 TMI 479



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 120/524 (22%), Positives = 230/524 (43%), Gaps = 66/524 (12%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNP-TTSSMEHAHLLFDRIP 83
           L+L+ +  +F  L + HA  I+   Q+DL  +TKL    TQ      +  HA  LF  +P
Sbjct: 12  LALISKACTFPHLAETHAQLIRNGYQHDLATVTKL----TQKLFDVGATRHARALFFSVP 67

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
           +PDI LFN + +G+S S       F    L N+ L PD++++     A A   +     G
Sbjct: 68  KPDIFLFNVLIKGFSFSPDASSISFYTHLLKNTTLSPDNFTY-----AFAISASPDDNLG 122

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
             LH  A+  G +SNL+V + L++LY + S V  AR++F+ + +   V +N +IT   R+
Sbjct: 123 MCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRN 182

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG--LDKYVK 261
              ++++ +F+++  + ++    T+ + L + A +  + +G  I     K G   D YV 
Sbjct: 183 CCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVL 242

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
             T LI + +KC  +D A  +F  +   D  +++A+I  ++ +G+   ++  F E++ + 
Sbjct: 243 --TGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSG 300

Query: 322 VSPDEITFLGLL----------YACSHTGL-----------VDEGWNYFYSMRDKYGIV- 359
                 T +GL+           AC   G            V       YS  ++  +  
Sbjct: 301 QRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLAR 360

Query: 360 --------PGIKHYGCMVDLLGRAGRLDEAYRFIDEL---PIKSTPILWRTLLSSCSSHN 408
                     +  +  M+    ++G  + A     E+        P+   ++LS+C+   
Sbjct: 361 QLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLG 420

Query: 409 NLGLAKQVIERIFELDDSHGGDYV--ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCS 466
            L   K V  ++ +  +     YV   L ++ A+ G   +   L  L  ++        +
Sbjct: 421 ALSFGKSV-HQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEK--------N 471

Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT 510
           ++  N ++     G G+H Y  +  K  +E++     +G+ P +
Sbjct: 472 TVTWNTMI----FGYGLHGYGDEALKLFNEMLH----LGFQPSS 507


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/550 (37%), Positives = 325/550 (59%), Gaps = 23/550 (4%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           L  L +C +   LKQ+HA  + T L      L+ L+N  ++  +T    +A  +F+ IP 
Sbjct: 9   LQKLQKCHNLNTLKQVHAQMLTTGLSFQTYYLSHLLNTSSKFAST----YAFTIFNHIPN 64

Query: 85  PDIVLFNTMARGYSRSKTPIRAIF-LFVELL-NSGLLPDDYSFPSLLKACACVGAEALEE 142
           P + L+NT+    +     I   F L+  +L +  L P+ ++FPSL KACA      L+ 
Sbjct: 65  PTLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACA--SHPWLQH 122

Query: 143 GKQLHCFAIK-LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           G  LH   +K L    + +V  +L+N YA+   +  +R +F+ ISEP + ++N ++ AYA
Sbjct: 123 GPPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAYA 182

Query: 202 RSSR-------------PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
           +S+                EAL LF ++Q   +KP +VT+++ +S+C+ LG+L  G W H
Sbjct: 183 QSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQGAWAH 242

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
            Y+ +  L     V TAL+DM++KCG L+ A  +FD +S +DT  ++AMI  +A HG G+
Sbjct: 243 GYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHGHGN 302

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
           +++ ++  M    + PD  T +  ++ACSH GLV+EG   F SM+  +G+ P ++HYGC+
Sbjct: 303 QALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLEHYGCL 362

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428
           +DLLGRAGRL EA   + ++P+K   ILWR+LL +   H NL + +  ++ + EL+    
Sbjct: 363 IDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIELEPETS 422

Query: 429 GDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYST 488
           G+YV+LSN+ A  GRW DV  +R LMKD GV K+PG S +E+N  + EF +GD  H +S 
Sbjct: 423 GNYVLLSNMYASIGRWNDVKRVRMLMKDHGVDKLPGFSLVEINGAMHEFLTGDKAHPFSK 482

Query: 489 DLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTT 548
           ++   + E+ + L   G+ P TS V   D+E+E+KE  L YHSE+LAI F L+ +     
Sbjct: 483 EIYSKIGEINRRLLEYGHKPRTSEVLF-DVEEEDKEDFLSYHSERLAIAFALIASSSSMP 541

Query: 549 IRVVKNLRVC 558
           IR++KNLRVC
Sbjct: 542 IRIIKNLRVC 551


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/537 (37%), Positives = 324/537 (60%), Gaps = 7/537 (1%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  CT    L   KQ+H+  I+  L  D+ V   L++   +     S++ +  +F+++
Sbjct: 254 SVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQM 313

Query: 83  PEPDIVLFNTMARGYSRS-KTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           PE +++ +  +   Y +S +    AI LF ++++  + P+ +SF S+LKAC  +      
Sbjct: 314 PEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPY-- 371

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G+Q++ +A+KLG+ S   V  +LI++YA    +E AR+ F+ + E  +VSYNAI+  YA
Sbjct: 372 TGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYA 431

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++ +  EA  LF E+ +  +  +  T  S LS  A +G++  G+ IH  + K G      
Sbjct: 432 KNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQC 491

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           +  ALI M+++CG ++ A  VF+ M  ++  +W++MI  +A HG   +++ MF +M++  
Sbjct: 492 ICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETG 551

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
             P+EIT++ +L ACSH G++ EG  +F SM  ++GIVP ++HY CMVDLLGR+G L EA
Sbjct: 552 TKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEA 611

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
             FI+ +P+ +  ++WRTLL +C  H N  L +   E I E +      Y++LSNL A A
Sbjct: 612 MEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASA 671

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           G+W+DV  +RK MK+R ++K  GCS IEV N V  F  G+  H  +  + + LD+L  ++
Sbjct: 672 GQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKI 731

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K +GY+PDT  V H D+E+E+KE  L  HSEK+A+ FGL++T     IR+ KNLRVC
Sbjct: 732 KEMGYIPDTDFVLH-DIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVC 787



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/392 (28%), Positives = 206/392 (52%), Gaps = 28/392 (7%)

Query: 11  QSPPPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNP 67
           Q+ PP L T +     LL  C  FR     K +H   +++ L+ D  VL  LI+  ++  
Sbjct: 38  QNAPPDLTTYSI----LLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCG 93

Query: 68  TTSSMEHAHLLFDRIP-EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFP 126
            T   E A L+F+ +  + D+V ++ M   ++ +    +AI+ F+++L  G  P++Y F 
Sbjct: 94  DT---ETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFA 150

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLG-LNSNLYVCTTLINLYAECS-DVEAARRIFEN 184
           ++++AC+   A     G+ ++ F +K G L +++ V   LI+++ + S D+ +A ++F+ 
Sbjct: 151 AVIRACS--NANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDK 208

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
           + E  +V++  +IT +A+     +A+ LF +++     P   T  S LS+C  LG L LG
Sbjct: 209 MPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALG 268

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKC---GRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
           K +H  + + GL   V V  +L+DM+AKC   G +DD+  VF+ M   +  +W+A+I AY
Sbjct: 269 KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAY 328

Query: 302 ATHGQGHK-SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP 360
              G+  K +I +F +M+   + P+  +F  +L AC +      G   +      Y +  
Sbjct: 329 VQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY-----SYAVKL 383

Query: 361 GIKHYGC----MVDLLGRAGRLDEAYRFIDEL 388
           GI    C    ++ +  R+GR+++A +  D L
Sbjct: 384 GIASVNCVGNSLISMYARSGRMEDARKAFDIL 415



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 108/225 (48%), Gaps = 8/225 (3%)

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
           R + A S    + ++N  P   T    L SC    +  LGK +H  + + GL+    V  
Sbjct: 24  RLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLN 83

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
            LI +++KCG  + A  +F+ M  K D  +WSAM+  +A +    ++I  F +M++    
Sbjct: 84  TLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFY 143

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC-MVDLLGR-AGRLDEA 381
           P+E  F  ++ ACS+      G    Y    K G +      GC ++D+  + +G L  A
Sbjct: 144 PNEYCFAAVIRACSNANYAWVG-EIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSA 202

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
           Y+  D++P ++  + W  +++  +    LG A+  I+   +++ S
Sbjct: 203 YKVFDKMPERNL-VTWTLMITRFA---QLGCARDAIDLFLDMELS 243


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/560 (37%), Positives = 326/560 (58%), Gaps = 41/560 (7%)

Query: 35  RGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIV-LFNTM 93
           +  K+ H   I   L +    L  +I+F   +P+   +++A LL  R   P  V LFNT 
Sbjct: 2   KQFKEAHTQLIINGLTHPPPSLRPIISFSALDPS-GDIDYALLLLLRTSTPPTVFLFNTT 60

Query: 94  ARGYSRSKTP---IRAIFLFVELLNSGLLPDDYSFPSLLKACA-CVGAEALEEGKQLHCF 149
            RG+SR++ P   + ++ LFV +    L P++++F  L + C+ CV   A + G+Q H  
Sbjct: 61  IRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCV---AFDLGRQFHGM 117

Query: 150 AIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII------------ 197
            IK     +++V  ++I  Y+ C  +  AR +F+  SE  VVS+N++I            
Sbjct: 118 VIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEA 177

Query: 198 -------------------TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL 238
                              + YA++ +P EAL+LFRE+Q  + +P    ++S LS+C+ L
Sbjct: 178 LSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQL 237

Query: 239 GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMI 298
           G+LD G W+H YI K  +     ++ ALIDM+AKCG +D A+  F     +D  A++A I
Sbjct: 238 GALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAI 297

Query: 299 VAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGI 358
              A +G   +++ +FE+M    +SPD ++++ +L ACSH G V++G++YF SM D +GI
Sbjct: 298 SGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGI 357

Query: 359 VPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
            P + HY CMVDLLGRAG L+EA +F+  +PIK   ++W  LL +C  + N  + ++V  
Sbjct: 358 RPELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVGS 417

Query: 419 RIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFF 478
            + E D +H G Y++LSN+ A + + ED + +RK M+ R V +VPGCS IEV   V EFF
Sbjct: 418 LLVESDQNHDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGFVHEFF 477

Query: 479 SGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITF 538
           SGD  H  + ++    +E+VKE+K  GY  +T  V   D+E+EEKE  + +HSEKLA+ F
Sbjct: 478 SGDRSHEKTEEIYLMWEEIVKEIKKFGYREETRAVVF-DVEEEEKEAVIGHHSEKLAVAF 536

Query: 539 GLLNTPPGTTIRVVKNLRVC 558
           G L T  G+T+R+VKN+R+C
Sbjct: 537 GFLYTKSGSTLRIVKNIRIC 556


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/537 (37%), Positives = 324/537 (60%), Gaps = 7/537 (1%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  CT    L   KQ+H+  I+  L  D+ V   L++   +     S++ +  +F+++
Sbjct: 236 SVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQM 295

Query: 83  PEPDIVLFNTMARGYSRS-KTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           PE +++ +  +   Y +S +    AI LF ++++  + P+ +SF S+LKAC  +      
Sbjct: 296 PEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPY-- 353

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G+Q++ +A+KLG+ S   V  +LI++YA    +E AR+ F+ + E  +VSYNAI+  YA
Sbjct: 354 TGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYA 413

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++ +  EA  LF E+ +  +  +  T  S LS  A +G++  G+ IH  + K G      
Sbjct: 414 KNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQC 473

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           +  ALI M+++CG ++ A  VF+ M  ++  +W++MI  +A HG   +++ MF +M++  
Sbjct: 474 ICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETG 533

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
             P+EIT++ +L ACSH G++ EG  +F SM  ++GIVP ++HY CMVDLLGR+G L EA
Sbjct: 534 TKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEA 593

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
             FI+ +P+ +  ++WRTLL +C  H N  L +   E I E +      Y++LSNL A A
Sbjct: 594 MEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASA 653

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           G+W+DV  +RK MK+R ++K  GCS IEV N V  F  G+  H  +  + + LD+L  ++
Sbjct: 654 GQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKI 713

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K +GY+PDT  V H D+E+E+KE  L  HSEK+A+ FGL++T     IR+ KNLRVC
Sbjct: 714 KEMGYIPDTDFVLH-DIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVC 769



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/392 (28%), Positives = 206/392 (52%), Gaps = 28/392 (7%)

Query: 11  QSPPPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNP 67
           Q+ PP L T +     LL  C  FR     K +H   +++ L+ D  VL  LI+  ++  
Sbjct: 20  QNAPPDLTTYSI----LLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCG 75

Query: 68  TTSSMEHAHLLFDRIP-EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFP 126
            T   E A L+F+ +  + D+V ++ M   ++ +    +AI+ F+++L  G  P++Y F 
Sbjct: 76  DT---ETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFA 132

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLG-LNSNLYVCTTLINLYAECS-DVEAARRIFEN 184
           ++++AC+   A     G+ ++ F +K G L +++ V   LI+++ + S D+ +A ++F+ 
Sbjct: 133 AVIRACS--NANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDK 190

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
           + E  +V++  +IT +A+     +A+ LF +++     P   T  S LS+C  LG L LG
Sbjct: 191 MPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALG 250

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKC---GRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
           K +H  + + GL   V V  +L+DM+AKC   G +DD+  VF+ M   +  +W+A+I AY
Sbjct: 251 KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAY 310

Query: 302 ATHGQGHK-SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP 360
              G+  K +I +F +M+   + P+  +F  +L AC +      G   +      Y +  
Sbjct: 311 VQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY-----SYAVKL 365

Query: 361 GIKHYGC----MVDLLGRAGRLDEAYRFIDEL 388
           GI    C    ++ +  R+GR+++A +  D L
Sbjct: 366 GIASVNCVGNSLISMYARSGRMEDARKAFDIL 397



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 108/225 (48%), Gaps = 8/225 (3%)

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
           R + A S    + ++N  P   T    L SC    +  LGK +H  + + GL+    V  
Sbjct: 6   RLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLN 65

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
            LI +++KCG  + A  +F+ M  K D  +WSAM+  +A +    ++I  F +M++    
Sbjct: 66  TLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFY 125

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC-MVDLLGR-AGRLDEA 381
           P+E  F  ++ ACS+      G    Y    K G +      GC ++D+  + +G L  A
Sbjct: 126 PNEYCFAAVIRACSNANYAWVG-EIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSA 184

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
           Y+  D++P ++  + W  +++  +    LG A+  I+   +++ S
Sbjct: 185 YKVFDKMPERNL-VTWTLMITRFA---QLGCARDAIDLFLDMELS 225


>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Cucumis sativus]
          Length = 602

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/536 (37%), Positives = 311/536 (58%), Gaps = 6/536 (1%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           +SL+  CT    L QIHA  I T    D  V  + +      P    + ++  LFD +  
Sbjct: 31  ISLIKSCTHKSQLLQIHAHIITTSSIQDPIVSLRFLTRTASAPF-RDLGYSRRLFDLLTN 89

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
           P +  +N M R YS S++P+  ++++ ++   G+  D  S    +K+C  +   +L  G 
Sbjct: 90  PFVSHYNAMLRAYSLSRSPLEGLYMYRDMERQGVRADPLSSSFAVKSC--IKLLSLLFGI 147

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           Q+H      G  ++  + T++++LY+ C   E A ++F+ + +  VV++N +I+   R+ 
Sbjct: 148 QIHARIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCLTRNK 207

Query: 205 RPNEALSLFRELQERNL--KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
           R  +AL LF  +Q      +P  VT L  L +CA L +L+ G+ IH YI+++G +    +
Sbjct: 208 RTRDALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALEFGERIHGYIQQHGYNTESNL 267

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
             +LI M+++CGR+D A  VFD M+ K+  +WSAMI   + +G G ++I  F EM K  V
Sbjct: 268 CNSLISMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNGHGREAIEAFWEMQKNGV 327

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            P + TF  +L ACSH GLVDEG  +F  MR ++ I P + HYGC+VDLLGRAG LD+AY
Sbjct: 328 EPGDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIAPNVHHYGCIVDLLGRAGMLDQAY 387

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
             I  + ++    +WRTLL +C  H +  L ++++E + EL     GDYV+L N+ + AG
Sbjct: 388 ELIMSMEVRPDATMWRTLLGACRIHGHGNLGERIVEHLIELKSQEAGDYVLLLNIYSSAG 447

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
            W+ V  LRKLMK++G+   P C++IE+N VV +F   D  H     + K LDE+ K+LK
Sbjct: 448 NWDKVTELRKLMKEKGIYTTPCCTTIELNGVVHQFAVDDISHPMKDKIYKQLDEINKQLK 507

Query: 503 MVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           + GY  + S   H  +E ++K  AL  HSEKLAI FG+L TPPG TIR+  N+R C
Sbjct: 508 IAGYEAEMSSELH-RLEPKDKGYALSNHSEKLAIAFGVLATPPGRTIRIANNIRTC 562


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/518 (39%), Positives = 300/518 (57%), Gaps = 35/518 (6%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           ++ A  LFDR+P  + + +  M  GY+++     A+ L   L  +G+LP   S  S   A
Sbjct: 368 VDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLA 427

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEA-------------- 177
           C+ +GA  LE G+Q+H  A+K G   N YVC  LI++Y +C ++E               
Sbjct: 428 CSHIGA--LETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTV 485

Query: 178 -----------------ARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN 220
                            AR IF+N+    VVS+  II+AYA++ R +EA+  F+ +   +
Sbjct: 486 SWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEH 545

Query: 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV 280
            KP    +   LS C  LGS  LG+ IH    K+G+D  + V  AL+ M+ KCG   D+ 
Sbjct: 546 EKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCG-CADSH 604

Query: 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG 340
            VFD+M  +D   W+  I   A HG G ++I M+E M    V P+E+TF+GLL ACSH G
Sbjct: 605 KVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAG 664

Query: 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400
           LVDEGW +F SM   YG+ P ++HY CMVDLLGR G +  A +FI ++PI+   ++W  L
Sbjct: 665 LVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSAL 724

Query: 401 LSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460
           L +C  H N  + ++  E++F  + S+ G+YV+LSN+ +  G W +V  LRK+MK RGV 
Sbjct: 725 LGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVS 784

Query: 461 KVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMED 520
           K PGCS +++ N V  F +GD  H    ++   L +L   L+  GYVPDT  V H D+++
Sbjct: 785 KEPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLLRGTGYVPDTEFVLH-DIDE 843

Query: 521 EEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           E+KE +L YHSEKLA+ +GLL TP G  I+++KNLR+C
Sbjct: 844 EQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRIC 881



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/359 (22%), Positives = 174/359 (48%), Gaps = 17/359 (4%)

Query: 69  TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSL 128
           +  M  A  LF ++P+ ++V +  M  GY R +   +   +F  + + G  PD  +F S+
Sbjct: 170 SRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASV 229

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA-ECSDVEAARRIFENISE 187
           L A    G + L   + L    +K G  S++ + T+++N+Y  + S ++ A + F+ + E
Sbjct: 230 LSAV--TGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVE 287

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
               +++ +I A +   R + A++++     +++ P+   +L+ L+ C   G +   + +
Sbjct: 288 RNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSI-PSQTALLTGLARC---GRITEARIL 343

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQG 307
            E I     D  V    A+I  + + G +D+A  +FD M  ++T +W+ MI  YA +G+ 
Sbjct: 344 FEQIP----DPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRS 399

Query: 308 HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367
            +++ + + + +  + P   +      ACSH G ++ G    +S+  K G       Y C
Sbjct: 400 EEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETG-RQVHSLAVKAGC--QFNSYVC 456

Query: 368 --MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
             ++ + G+   ++   +  + + +K T + W + +++   +N L  A+ + + +   D
Sbjct: 457 NALISMYGKCRNMEYVRQVFNRMRVKDT-VSWNSFIAALVQNNMLEDARHIFDNMLSRD 514



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 96/446 (21%), Positives = 186/446 (41%), Gaps = 88/446 (19%)

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
           E D+V+  ++   Y+R  +   A+ + ++  +  +  ++Y++ +++ A        L  G
Sbjct: 255 ESDVVIGTSILNVYTRDAS---ALDIAIKFFDGMVERNEYTWSTMIAA--------LSHG 303

Query: 144 KQLHCFAIKLGLN--SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY- 200
            ++       G +   ++   T L+   A C  +  AR +FE I +P VVS+NA+IT Y 
Sbjct: 304 GRIDAAIAVYGRDPVKSIPSQTALLTGLARCGRITEARILFEQIPDPIVVSWNAMITGYM 363

Query: 201 ------------------------------ARSSRPNEALSLFRELQERNLKPTDVTMLS 230
                                         A++ R  EAL L + L    + P+  ++ S
Sbjct: 364 QNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTS 423

Query: 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290
           +  +C+ +G+L+ G+ +H    K G      V  ALI M+ KC  ++    VF+ M  KD
Sbjct: 424 SFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKD 483

Query: 291 TQAWSAMIV-------------------------------AYATHGQGHKSILMFEEMMK 319
           T +W++ I                                AYA   +G +++  F+ M+ 
Sbjct: 484 TVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLH 543

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
               P+      LL  C   G    G    +++  K+G+   +     ++ +  + G  D
Sbjct: 544 EHEKPNSPILTILLSVCGGLGSAKLG-QQIHTVAIKHGMDSELIVANALMSMYFKCGCAD 602

Query: 380 EAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG-----GDYVIL 434
            +++  D +  +     W T ++ C+ H   GL ++ I +++E  +S G       +V L
Sbjct: 603 -SHKVFDSMEERDI-FTWNTFITGCAQH---GLGREAI-KMYEHMESVGVLPNEVTFVGL 656

Query: 435 SNLCARAGRW-EDVDYLRKLMKDRGV 459
            N C+ AG   E   + + + +D G+
Sbjct: 657 LNACSHAGLVDEGWQFFKSMSRDYGL 682



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/364 (21%), Positives = 142/364 (39%), Gaps = 54/364 (14%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +  A  +FD +P  DI+ +N+M   Y  S     A  LF          D  S  ++  A
Sbjct: 49  LREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILF----------DAISGGNVRTA 98

Query: 132 CACVGAEALEEGKQLHCFAIKLGL-NSNLYVCTTLINLYAECSDVEAARRIFENISEPCV 190
              +   A   G+ L    +  G+   N      +++ Y +  D+  ARR+F+ +    V
Sbjct: 99  TILLSGYA-RLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDV 157

Query: 191 VSYNA-------------------------------IITAYARSSRPNEALSLFRELQER 219
            S+N+                               +I+ Y R  +  +   +FR +   
Sbjct: 158 TSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHE 217

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK-CGRLDD 278
              P      S LS+   L  L + + +   + K G +  V + T++++++ +    LD 
Sbjct: 218 GASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDI 277

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A+  FD M  ++   WS MI A +  G+   +I ++       + P +   L  L  C  
Sbjct: 278 AIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSI-PSQTALLTGLARC-- 334

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
            G + E    F  + D     P +  +  M+    + G +DEA    D +P ++T I W 
Sbjct: 335 -GRITEARILFEQIPD-----PIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNT-ISWA 387

Query: 399 TLLS 402
            +++
Sbjct: 388 GMIA 391



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 12/161 (7%)

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           +++A I   AR  R  EA  +F  +  R++   + +M+SA  +    G L+  + + + I
Sbjct: 35  AHSARIRELARLGRLREAREVFDAMPHRDIIAWN-SMISAYCNS---GMLEDARILFDAI 90

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
                   V+  T L+  +A+ GR+ DA  VFD M  ++T AW+AM+  Y  +G     I
Sbjct: 91  S----GGNVRTATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNG----DI 142

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
            M   +  A  S D  ++  ++    H+  + + WN F  M
Sbjct: 143 TMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQM 183


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/551 (36%), Positives = 338/551 (61%), Gaps = 9/551 (1%)

Query: 11  QSPPPKLCTNTPNALSLLPRC---TSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNP 67
           Q+   K+  +    L++LP C   +  + LK++H  + +  LQ++  V    I   T+  
Sbjct: 297 QTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCG 356

Query: 68  TTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPS 127
              S E    +FD +    +  +N +  GY+++  P +A+ L++++ +SGL PD ++  S
Sbjct: 357 ALCSSER---VFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGS 413

Query: 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE 187
           LL AC+ +  ++L  G+++H FA++ GL  + ++  +L++LY  C    AA+ +F+ +  
Sbjct: 414 LLLACSRM--KSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEH 471

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
             +VS+N +I  Y+++  P+EA++LFR++    ++P ++ ++    +C+ L +L LGK +
Sbjct: 472 RSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKEL 531

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQG 307
           H +  K  L + + V++++IDM+AK G +  +  +FD +  KD  +W+ +I  Y  HG+G
Sbjct: 532 HCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRG 591

Query: 308 HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367
            +++ +FE+M++  + PD+ TF G+L ACSH GLV++G  YF  M + + I P ++HY C
Sbjct: 592 KEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTC 651

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
           +VD+LGRAGR+D+A R I+E+P      +W +LLSSC  H NLGL ++V  ++ EL+   
Sbjct: 652 VVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEK 711

Query: 428 GGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYS 487
             +YV++SNL A +G+W+DV  +R  MKD G+ K  GCS IEV   V  F  GD +    
Sbjct: 712 PENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPEL 771

Query: 488 TDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGT 547
            ++++    L  ++  +GY PDT  V H D+E+E+K   LR HSEKLAI+FGLLNT  G 
Sbjct: 772 EEVRETWRRLEVKISSIGYTPDTGSVLH-DLEEEDKIGILRGHSEKLAISFGLLNTAKGL 830

Query: 548 TIRVVKNLRVC 558
            +RV KNLR+C
Sbjct: 831 PVRVYKNLRIC 841



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/439 (24%), Positives = 214/439 (48%), Gaps = 18/439 (4%)

Query: 25  LSLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           +++LP C     +++   +H + +K  L  +L V   LI+  ++      +  A LLFD+
Sbjct: 208 VTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSK---CRFLSEAQLLFDK 264

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL--NSGLLPDDYSFPSLLKACACVGAEA 139
             + +IV +N+M  GY+R +   R  +L  ++   ++ +  D+++  ++L    C+    
Sbjct: 265 NDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLP--VCLERSE 322

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
           L+  K+LH ++ + GL SN  V    I  Y  C  + ++ R+F+ +    V S+NA++  
Sbjct: 323 LQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCG 382

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
           YA++S P +AL L+ ++ +  L P   T+ S L +C+ + SL  G+ IH +  + GL   
Sbjct: 383 YAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVD 442

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
             +  +L+ ++  CG+   A  +FD M  +   +W+ MI  Y+ +G   ++I +F +M+ 
Sbjct: 443 PFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLS 502

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
             + P EI  + +  ACS    +  G    +    K  +   I     ++D+  + G + 
Sbjct: 503 DGIQPYEIAIMCVCGACSQLSALRLG-KELHCFALKAHLTEDIFVSSSIIDMYAKGGCIG 561

Query: 380 EAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD---DSHGGDYVILSN 436
            + R  D L  K     W  +++    H     A ++ E++  L    D      ++++ 
Sbjct: 562 LSQRIFDRLREKDVAS-WNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMA- 619

Query: 437 LCARAGRWED-VDYLRKLM 454
            C+ AG  ED ++Y  +++
Sbjct: 620 -CSHAGLVEDGLEYFNQML 637



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 167/305 (54%), Gaps = 11/305 (3%)

Query: 38  KQIHA-VTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           +++H  V+  T   ND  + T++I   T      S   + ++FD++   ++  +N +   
Sbjct: 18  RRLHEMVSASTQFCNDFVLNTRII---TMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSA 74

Query: 97  YSRSKTPIRAIFLFVELLN-SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155
           Y+R++    A+ +F EL++ +   PD+++ P ++KACA  G   L  G+ +H  A K+ L
Sbjct: 75  YTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACA--GLLDLGLGQIIHGMATKMDL 132

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
            S+++V   LI +Y +C  VE A ++FE++ E  +VS+N+II  ++ +    E+ + FRE
Sbjct: 133 VSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFRE 192

Query: 216 L--QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273
           +   E +  P   T+++ L  CA    ++ G  +H    K GL++ + VN +LIDM++KC
Sbjct: 193 MLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKC 252

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM--KAQVSPDEITFLG 331
             L +A  +FD    K+  +W++MI  YA      ++  + ++M    A++  DE T L 
Sbjct: 253 RFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILN 312

Query: 332 LLYAC 336
           +L  C
Sbjct: 313 VLPVC 317



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 137/275 (49%), Gaps = 6/275 (2%)

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTT-LINLYAECSDVEAARRIFENISEPCVV 191
           AC   + +E G++LH          N +V  T +I +Y+ C     +R +F+ +    + 
Sbjct: 7   ACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLF 66

Query: 192 SYNAIITAYARSSRPNEALSLFREL-QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY 250
            +NAI++AY R+    +A+S+F EL      KP + T+   + +CA L  L LG+ IH  
Sbjct: 67  QWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGM 126

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310
             K  L   V V  ALI M+ KCG +++AV VF++M  ++  +W+++I  ++ +G   +S
Sbjct: 127 ATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQES 186

Query: 311 ILMFEEMMKAQVS--PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
              F EM+  + S  PD  T + +L  C+    +++G    + +  K G+   +     +
Sbjct: 187 FNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGM-AVHGLAVKLGLNEELMVNNSL 245

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
           +D+  +   L EA    D+   K   + W +++  
Sbjct: 246 IDMYSKCRFLSEAQLLFDKND-KKNIVSWNSMIGG 279


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/607 (35%), Positives = 338/607 (55%), Gaps = 61/607 (10%)

Query: 7   PPITQSPPPKLCTNTPNAL------------------SLLPRCTSFRGLKQIHAVTIKTH 48
           P   QSP   + +NT +A+                   LL +  S   +KQIHA  +   
Sbjct: 23  PFYVQSPLVYISSNTSSAIWEPSGTSSFSLPSHSTFVQLLKKRPSLTQIKQIHAQVVTHG 82

Query: 49  LQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE-PDIVLFNTMARGYSRSKTPIRAI 107
           L  + ++L  LI+         ++  A ++FD+ P  P  +++N M + YS++ +   ++
Sbjct: 83  LAQNTSLLGPLIH---SYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESL 139

Query: 108 FLFVELLNSG--LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTL 165
           +LF ++L  G     D Y+F  +  AC+         G+ +H   +K G  S+++V  +L
Sbjct: 140 YLFHQMLAHGRPTSADKYTFTFVFTACS-RHPTLRGYGENVHGMVVKDGYESDIFVGNSL 198

Query: 166 INLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN----- 220
           +N+Y+  S +  A+R+F+ + +  V+++ +++  YA       A  LF  +  RN     
Sbjct: 199 VNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWA 258

Query: 221 ---------------------------LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
                                      +KP +  ++S LS+CA LG+LD GKWIH YI K
Sbjct: 259 VMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDK 318

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
             +     ++TALIDM+AKCGR+D A  VFD +  +D   W++MI   + HG G + +  
Sbjct: 319 NRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWT 378

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           F EM+     PD+IT LG+L  CSH+GLV+EG + F+ M   +GIVP ++HYGC++DLLG
Sbjct: 379 FSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLG 438

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL-DDSHGGDYV 432
           RAGRL+ A+  I  +P++   + WR LLS+C  H ++ L +++I  I EL   SHGG YV
Sbjct: 439 RAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAELCPGSHGGGYV 498

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
           +LSNL A  G+WE V  +RK M  RG    PGCS IE++ VV EF + D +H   +++ K
Sbjct: 499 LLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWIEIDGVVHEFLAADKLHPRISEINK 558

Query: 493 ALDELVKELKMV-GYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
            L+E+++ + +  GYVP T  V   D+ +E+KE A+ +HSEKLA+ FGLL+T  G TIR+
Sbjct: 559 KLNEVLRRISIEGGYVPSTKQVLF-DLNEEDKEQAVSWHSEKLAVAFGLLSTQEG-TIRI 616

Query: 552 VKNLRVC 558
            KNLR C
Sbjct: 617 TKNLRTC 623


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/517 (40%), Positives = 300/517 (58%), Gaps = 38/517 (7%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  LFD++   D+V +N M  GYS++      + L+ E+  SG  PD     ++L ACA 
Sbjct: 170 ARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAH 229

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD-------------------- 174
            G   L  GK +H F    G     ++ T+L+N+YA C                      
Sbjct: 230 AGN--LSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVST 287

Query: 175 -----------VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKP 223
                      V+ AR IF+ + E  +V ++A+I+ YA S +P EAL LF E+Q R + P
Sbjct: 288 AMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVP 347

Query: 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVF 283
             +TMLS +S+CA +G+L   KWIH Y  K G  + + +N ALIDM+AKCG L  A  VF
Sbjct: 348 DQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVF 407

Query: 284 DNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVD 343
           +NM  K+  +WS+MI A+A HG    +I +F  M +  + P+ +TF+G+LYACSH GLV+
Sbjct: 408 ENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVE 467

Query: 344 EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
           EG  +F SM +++ I P  +HYGCMVDL  RA  L +A   I+ +P     I+W +L+S+
Sbjct: 468 EGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSA 527

Query: 404 CSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVP 463
           C +H  + L +    R+ EL+  H G  V+LSN+ A+  RW+DV  +RKLMK +GV K  
Sbjct: 528 CQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEK 587

Query: 464 GCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTS--LVHHGDMEDE 521
            CS IEVNN V  F   D  H  S ++ K LD +V +LK+VGY P TS  LV   D+E+E
Sbjct: 588 ACSRIEVNNEVHVFMMADRYHKQSDEIYKKLDAVVSQLKLVGYTPSTSGILV---DLEEE 644

Query: 522 EKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           EK+  + +HSEKLA+ +GL+     + IR+VKNLR+C
Sbjct: 645 EKKEVVLWHSEKLALCYGLIGERKESCIRIVKNLRIC 681



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 131/462 (28%), Positives = 237/462 (51%), Gaps = 41/462 (8%)

Query: 21  TPNALSLLPRCTSFRGLKQIHAVTIKTHLQND--LNVLTKLINFCTQNPTTSSMEHAHLL 78
           +P+   LL  C + R +KQIHA  +++ + N   L +   L      +P+ S++++A  L
Sbjct: 12  SPSEKGLLASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSL 71

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
           F  IP P     N + R +SR  TP   + L++ L  +G   D +SFP LLKA + + A 
Sbjct: 72  FSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSA- 130

Query: 139 ALEEGKQLHCFAIKLGL-NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
            L  G ++H  A K G  +++ ++ + LI +YA C  +  AR +F+ +S   VV++N +I
Sbjct: 131 -LNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMI 189

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
             Y++++  +  L L+ E++    +P  + + + LS+CA  G+L  GK IH++IK  G  
Sbjct: 190 DGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFR 249

Query: 258 KYVKVNTALIDMHAKCGRL-------------------------------DDAVSVFDNM 286
               + T+L++M+A CG +                                DA  +FD M
Sbjct: 250 VGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRM 309

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG-LVDEG 345
             KD   WSAMI  YA   Q  +++ +F EM + ++ PD+IT L ++ AC++ G LV   
Sbjct: 310 VEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAK 369

Query: 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS 405
           W + Y+ ++ +G    I +   ++D+  + G L +A    + +P K+  I W +++++ +
Sbjct: 370 WIHTYADKNGFGRTLPINN--ALIDMYAKCGNLVKAREVFENMPRKNV-ISWSSMINAFA 426

Query: 406 SHNNLGLAKQVIERIFELD-DSHGGDYVILSNLCARAGRWED 446
            H +   A  +  R+ E + + +G  ++ +   C+ AG  E+
Sbjct: 427 MHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEE 468



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 133/237 (56%), Gaps = 4/237 (1%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           ++ A  +FDR+ E D+V ++ M  GY+ S  P+ A+ LF E+    ++PD  +  S++ A
Sbjct: 299 VQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISA 358

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           CA VGA  L + K +H +A K G    L +   LI++YA+C ++  AR +FEN+    V+
Sbjct: 359 CANVGA--LVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVI 416

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEY 250
           S++++I A+A     + A++LF  ++E+N++P  VT +  L +C+  G ++ G K+    
Sbjct: 417 SWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSM 476

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQ 306
           I ++ +    +    ++D++ +   L  A+ + + M    +   W +++ A   HG+
Sbjct: 477 INEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGE 533


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/584 (36%), Positives = 333/584 (57%), Gaps = 56/584 (9%)

Query: 25  LSLLPRCTSF--RGL-KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           +++LP C S   R L KQ H   + + +  ++ V   L++   +      M+ A+ +F  
Sbjct: 233 VNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAK---FGMMDEANTVFSN 289

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLF------------------------------- 110
           +P  D+V +N M  GYS+      A+ LF                               
Sbjct: 290 MPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEA 349

Query: 111 ----VELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK--LGLNSNLY---- 160
                ++L+SG+ P++ +  S+L  CA VGA  L  GK++HC+AIK  + L  N +    
Sbjct: 350 LGVCRQMLSSGIKPNEVTLISVLSGCASVGA--LMHGKEIHCYAIKYPMDLRKNGHGDEN 407

Query: 161 -VCTTLINLYAECSDVEAARRIFENIS--EPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            V   LI++YA+C  V+ AR +F+++S  E  VV++  +I  Y++    N+AL L  E+ 
Sbjct: 408 MVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMF 467

Query: 218 ERN--LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY-VKVNTALIDMHAKCG 274
           E +   +P   T+  AL +CA L +L +GK IH Y  +   +   + V+  LIDM+AKCG
Sbjct: 468 EEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCG 527

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
            + DA  VFDNM  K+   W++++  Y  HG G +++ +FEEM +     D +T L +LY
Sbjct: 528 DIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLY 587

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           ACSH+G++D+G  YF  M+  +G+ PG +HY C+VDLLGRAGRL+ A R I+E+P++  P
Sbjct: 588 ACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPP 647

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454
           ++W  LLS C  H  + L +   ++I EL  ++ G Y +LSN+ A AGRW+DV  +R LM
Sbjct: 648 VVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLM 707

Query: 455 KDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVH 514
           + +G+ K PGCS +E       FF GD  H ++ ++ + L + ++ +K +GYVP+T    
Sbjct: 708 RHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKDIGYVPETGFAL 767

Query: 515 HGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           H D++DEEK+  L  HSEKLA+ +G+L TP G  IR+ KNLRVC
Sbjct: 768 H-DVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVC 810



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/459 (24%), Positives = 212/459 (46%), Gaps = 57/459 (12%)

Query: 16  KLCTNTPNALSLLP----RCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSS 71
           K+   + +AL + P    +C +   +K IH   +   +   LN+ + LI   +   +   
Sbjct: 19  KVSLFSTSALEITPPFIHKCKTISQVKLIHQKLLSFGILT-LNLTSHLI---STYISLGC 74

Query: 72  MEHAHLLFDRIPEPD--IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
           + HA  L  R P  D  +  +N++ R Y  +    + +  F  + +    PD+Y+FP + 
Sbjct: 75  LSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVF 134

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC 189
           KAC  +   ++  G   H  +   G  SN++V   L+ +Y+ C  +  AR++F+ +    
Sbjct: 135 KACGEI--SSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWD 192

Query: 190 VVSYNAIITAYARSSRPNEALSLFREL-QERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
           VVS+N+II +YA+  +P  AL +F ++  E   +P D+T+++ L  CA +G+  LGK  H
Sbjct: 193 VVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFH 252

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
            +     + + + V   L+DM+AK G +D+A +VF NM  KD  +W+AM+  Y+  G+  
Sbjct: 253 GFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFE 312

Query: 309 KSILMFE-----------------------------------EMMKAQVSPDEITFLGLL 333
            ++ +FE                                   +M+ + + P+E+T + +L
Sbjct: 313 DAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVL 372

Query: 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG-------CMVDLLGRAGRLDEAYRFID 386
             C+  G +  G    +    KY +      +G        ++D+  +  ++D A    D
Sbjct: 373 SGCASVGALMHG-KEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFD 431

Query: 387 EL-PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
            L P +   + W  ++   S H +   A +++  +FE D
Sbjct: 432 SLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEED 470



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 13/205 (6%)

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA--WSAMIVAYA 302
           K IH+ +  +G+   + + + LI  +   G L  AVS+       D     W+++I +Y 
Sbjct: 45  KLIHQKLLSFGILT-LNLTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYG 103

Query: 303 THGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI 362
            +G+ +K +  F  M     +PD  TF  +  AC     V  G +  +++    G +  +
Sbjct: 104 NNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCG-DSSHALSRVTGFMSNV 162

Query: 363 KHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
                +V +  R G L +A +  DE+P+    + W +++    S+  LG  K  +E   +
Sbjct: 163 FVGNALVAMYSRCGSLSDARKVFDEMPVWDV-VSWNSII---ESYAKLGKPKMALEMFSK 218

Query: 423 LDDSHG--GDYVILSNL---CARAG 442
           + +  G   D + L N+   CA  G
Sbjct: 219 MTNEFGFRPDDITLVNVLPPCASVG 243


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 224/590 (37%), Positives = 329/590 (55%), Gaps = 59/590 (10%)

Query: 22  PNALSL---LPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           P+A++L   LP C S   L   KQ+H  +++  L +D+ V   L++   +    S M  A
Sbjct: 232 PDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAK---CSKMNEA 288

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKT--------------------------------- 102
           + +F+ I + D+V +N M  GYS+  +                                 
Sbjct: 289 NKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQK 348

Query: 103 --PIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK--LGLNSN 158
                A+ +F ++   GL P+  +  SLL  CA VGA  L  GKQ H + IK  L LN N
Sbjct: 349 GHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGA--LLYGKQTHAYVIKNILNLNWN 406

Query: 159 -----LYVCTTLINLYAECSDVEAARRIFENI--SEPCVVSYNAIITAYARSSRPNEALS 211
                L V   LI++YA+C     AR IF++I   +  VV++  +I  YA+    N+AL 
Sbjct: 407 DKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALK 466

Query: 212 LFREL--QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY-IKKYGLDKYVKVNTALID 268
           LF ++  Q+ +LKP   T+  AL +CA LG L LG+ +H Y ++     + + V   LID
Sbjct: 467 LFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLID 526

Query: 269 MHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT 328
           M++K G +D A +VFDNM  ++  +W++++  Y  HG+G +++ +F++M K   + D IT
Sbjct: 527 MYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGIT 586

Query: 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388
           FL +LYACSH+G+VD+G  YF+ M   +GI PG +HY CMVDLLGRAGRL+EA   I  +
Sbjct: 587 FLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNM 646

Query: 389 PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVD 448
            ++ T ++W  LLS+   H N+ L +    ++ EL   + G Y +LSNL A A RW+DV 
Sbjct: 647 SMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVA 706

Query: 449 YLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVP 508
            +R LMK  G+ K PGCS I+       FF GD  H  S  +   L +L+K +K +GYVP
Sbjct: 707 RIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIKRIKDMGYVP 766

Query: 509 DTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            TS   H D++DEEK   L  HSEKLA+ +G+L T PG  IR+ KNLR+C
Sbjct: 767 QTSFALH-DVDDEEKGDLLFEHSEKLAVAYGILTTAPGQPIRIHKNLRIC 815



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 178/363 (49%), Gaps = 25/363 (6%)

Query: 9   ITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQN-- 66
            T SPP      T   +SLL +C +    K         H Q  ++  T++ ++      
Sbjct: 24  FTTSPP------TIPLISLLRQCKTLINAKL-------AHQQIFVHGFTEMFSYAVGAYI 70

Query: 67  PTTSSMEHAHLLFDRIPEPDIVLF-NTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSF 125
              +S E   LL   IP    V + N + R   +       +  + ++   G LPD Y+F
Sbjct: 71  ECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTF 130

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
           P +LKAC  +   +L  G  +H      GL SN+++C +++ +Y  C  ++ A ++F+ +
Sbjct: 131 PFVLKACGEI--PSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEV 188

Query: 186 SE---PCVVSYNAIITAYARSSRPNEALSL-FRELQERNLK--PTDVTMLSALSSCALLG 239
            E     +VS+N+I+ AY +  +   AL + FR     +LK  P  +T+++ L +CA + 
Sbjct: 189 LERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVF 248

Query: 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIV 299
           +L  GK +H +  + GL   V V  AL+ M+AKC ++++A  VF+ +  KD  +W+AM+ 
Sbjct: 249 ALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVT 308

Query: 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359
            Y+  G    ++ +F+ M +  +  D IT+  ++   +  G   E  + F  M+  YG+ 
Sbjct: 309 GYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQ-LYGLE 367

Query: 360 PGI 362
           P +
Sbjct: 368 PNV 370



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 123/272 (45%), Gaps = 16/272 (5%)

Query: 166 INLYAECSDVEAARRIFENI--SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKP 223
           +  Y EC     A  + + +  S   V  +NA+I    +    ++ L  + ++Q     P
Sbjct: 66  VGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLP 125

Query: 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVF 283
              T    L +C  + SL  G  +H  +   GL   V +  +++ M+ +CG LDDA  +F
Sbjct: 126 DHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMF 185

Query: 284 DNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEM---MKAQVSPDEITFLGLLYACS 337
           D +  +   D  +W++++ AY   GQ   ++ +   M      ++ PD IT + +L AC+
Sbjct: 186 DEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACA 245

Query: 338 HTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
               +  G   + +S+R+  G+V  +     +V +  +  +++EA +  + +  K   + 
Sbjct: 246 SVFALQHGKQVHGFSVRN--GLVDDVFVGNALVSMYAKCSKMNEANKVFEGIK-KKDVVS 302

Query: 397 WRTLLSSCSS----HNNLGLAKQVIERIFELD 424
           W  +++  S      + L L K + E   +LD
Sbjct: 303 WNAMVTGYSQIGSFDSALSLFKMMQEEDIKLD 334


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1111

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/568 (36%), Positives = 329/568 (57%), Gaps = 37/568 (6%)

Query: 24  ALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           A+SLL   T+F+ ++QIHA         D +++ + +     +  T  +++A+ + DR  
Sbjct: 17  AISLLDSGTTFKEIRQIHAKLYVDGTLKDDHLVGQFVKAVALSDHTY-LDYANQILDRSD 75

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSG--LLPDDYSFPSLLKACACVGAEALE 141
           +P +   N+M R + +S  P ++   +  +L+SG  L PD+Y+   L++AC  +G    E
Sbjct: 76  KPTLFALNSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACTGLGMR--E 133

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAE------------------------------ 171
            G Q+H   I+ G +++ +V T LI+LYAE                              
Sbjct: 134 TGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVCRTAMVTACA 193

Query: 172 -CSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLS 230
            C DV  AR++FE + E   +++NA+I+ YA+     EAL+LF  +Q   +K   V+M+S
Sbjct: 194 RCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGVKVNGVSMIS 253

Query: 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290
            LS+C  LG+LD G+W H YI++  +   V++ T L+D++AKCG +D A+ VF  M  K+
Sbjct: 254 VLSACTQLGALDQGRWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKN 313

Query: 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350
              WS+ +   A +G G K + +F  M +  V+P+ +TF+ +L  CS  G VDEG  +F 
Sbjct: 314 VYTWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFD 373

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
           SMR+++GI P + HYGC+VDL  RAGRL++A   I ++P+K+   +W +LL +   + NL
Sbjct: 374 SMRNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQMPMKAHAAVWSSLLHASRMYKNL 433

Query: 411 GLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEV 470
            L     +++ EL+ S+ G YV+LSN+ A +  W++V ++R+ MK +GV K PGCS +EV
Sbjct: 434 ELGVLASKKMLELETSNHGAYVLLSNIYADSDDWDNVSHVRQSMKSKGVRKQPGCSVMEV 493

Query: 471 NNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYH 530
           N  V EFF GD  H    ++     ++ + L++ GY  DT+ V   D+++EEKE AL  H
Sbjct: 494 NGEVHEFFVGDKSHPKYNEIDAVWKDISRRLRLAGYKADTTPVMF-DIDEEEKEDALCLH 552

Query: 531 SEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           SEK AI FG+++      IR+VKNLRVC
Sbjct: 553 SEKAAIAFGIMSLKADVPIRIVKNLRVC 580



 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 169/443 (38%), Positives = 266/443 (60%), Gaps = 4/443 (0%)

Query: 117  GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVE 176
            G  P++ +F S++ AC   G +  EEG  +H   +K G+   + V   L+NLY +  D+ 
Sbjct: 632  GFRPNEVTFLSMISACVHGGNK--EEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLI 689

Query: 177  AARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236
            ++ ++FE++S   +VS+N +I  + ++    E L+ F   +   LKP   T L+ L  C 
Sbjct: 690  SSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCE 749

Query: 237  LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSA 296
             +G + L + IH  I   G +    + TAL+D++AK GRL+D+ +VF  ++  D+ AW+A
Sbjct: 750  DIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTA 809

Query: 297  MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKY 356
            M+ AYATHG G  +I  FE M+   +SPD +TF  LL ACSH+GLV+EG  YF +M  +Y
Sbjct: 810  MLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRY 869

Query: 357  GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQV 416
             I P + HY CMVDL+GR+G L +AY  I E+P++ +  +W  LL +C  + +  L  + 
Sbjct: 870  RIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKA 929

Query: 417  IERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVRE 476
             +R+FEL+   G +Y++LSN+ + +G W+D   +R LMK +G+++  G S IE  N + +
Sbjct: 930  AKRLFELEPRDGRNYIMLSNIYSASGLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIHK 989

Query: 477  FFSGDGVHSYSTDLQKALDELVKELKM-VGYVPDTSLVHHGDMEDEEKEIALRYHSEKLA 535
            F  GD  H  S  +QK L E+ K++K  +G+   T  V H D++++ KE  +  HSEK+A
Sbjct: 990  FVVGDWSHPESEKIQKKLKEIRKKMKSELGFKSRTEFVLH-DVDEDVKEEMINQHSEKIA 1048

Query: 536  ITFGLLNTPPGTTIRVVKNLRVC 558
            + FGLL   P   I + KNLR+C
Sbjct: 1049 MAFGLLVISPMEPIIIRKNLRIC 1071



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 121/254 (47%), Gaps = 29/254 (11%)

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           E   +P +VT LS +S+C   G+ + G  IH  + K G+ + VKV  AL++++ K G L 
Sbjct: 630 EVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLI 689

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            +  +F+++S K+  +W+ MIV +  +G   + +  F       + PD+ TFL +L  C 
Sbjct: 690 SSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCE 749

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYG---------CMVDLLGRAGRLDEAYRFIDEL 388
             G+V          R   GI   I   G          ++DL  + GRL+++     E+
Sbjct: 750 DIGVV----------RLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEI 799

Query: 389 PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG--GDYVILSNL---CARAGR 443
                 + W  +L++ ++H   G  +  I+  FEL   +G   D+V  ++L   C+ +G 
Sbjct: 800 T-SPDSMAWTAMLAAYATH---GYGRDAIKH-FELMVHYGLSPDHVTFTHLLNACSHSGL 854

Query: 444 WEDVDYLRKLMKDR 457
            E+  Y  + M  R
Sbjct: 855 VEEGRYYFETMSKR 868


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/525 (39%), Positives = 321/525 (61%), Gaps = 12/525 (2%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           +H + +      D  + TKLIN  ++  T   +++A  +FD+  +  I ++N + R  + 
Sbjct: 91  VHQLLVDGGFDQDPFLATKLINMFSELDT---VDNARKVFDKTRKRTIYVWNALFRALAL 147

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEAL----EEGKQLHCFAIKLGL 155
           +      + L+  +   G+  D +++  LLKAC  V +E L    ++GK++H   ++ G 
Sbjct: 148 AGRGNDVLELYPRMNMMGVSSDRFTYTYLLKAC--VASECLVSFLQKGKEIHAHILRHGY 205

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
            ++++V TTL+++YA    V  A  +F+ +    VVS++A+I  YA++ +P EAL LFRE
Sbjct: 206 GAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFRE 265

Query: 216 --LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273
             L   +  P  VTM+S L +CA   +L+ GK IH YI + GLD  + V +ALI M+A+C
Sbjct: 266 MMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARC 325

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
           G+L+    +FD M  KD   W+++I +Y  HG G K+I +FEEM+    SP  I+F+ +L
Sbjct: 326 GKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVL 385

Query: 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
            ACSHTGLV+EG   F SM  ++GI P ++HY CMVDLLGRA RLDEA + I++L I+  
Sbjct: 386 GACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPG 445

Query: 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKL 453
           P +W +LL +C  H ++ LA++  +R+F+L+ ++ G+YV+L+++ A A  W++V  ++KL
Sbjct: 446 PKVWGSLLGACRIHCHVELAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKL 505

Query: 454 MKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLV 513
           +  R + KVPG S IEV   +  F S D  +     L   L  L  E+K  GY P T LV
Sbjct: 506 LDSRELQKVPGRSWIEVRRKIYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYTPQTKLV 565

Query: 514 HHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            + D++ EEKE  +  HSEKLA+ FGL+NT  G TIR+ KNLR+C
Sbjct: 566 LY-DLDQEEKERIVLGHSEKLAVAFGLINTSKGDTIRITKNLRLC 609



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 105/230 (45%), Gaps = 13/230 (5%)

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
           N S P   + N +I +  +     +AL L         +  ++ +LSA    +L  +LD 
Sbjct: 32  NPSTPPNSNNNHLIQSLCKQGNLKQALYLLSHESNPTQQTCELLILSAARRNSLSDALD- 90

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303
              +H+ +   G D+   + T LI+M ++   +D+A  VFD    +    W+A+  A A 
Sbjct: 91  ---VHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALAL 147

Query: 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT----GLVDEGWN-YFYSMRDKYGI 358
            G+G+  + ++  M    VS D  T+  LL AC  +      + +G   + + +R  YG 
Sbjct: 148 AGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYG- 206

Query: 359 VPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408
              +     ++D+  R G +  A    DE+P+K+  + W  ++ +C + N
Sbjct: 207 -AHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNV-VSWSAMI-ACYAKN 253


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/508 (38%), Positives = 300/508 (59%), Gaps = 41/508 (8%)

Query: 27  LLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPD 86
           +L  C +   LK+IHA  +K  L     ++TK+++ C     T   E+A+LLF  + +P+
Sbjct: 20  ILKDCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHYGET---EYANLLFKGVADPN 76

Query: 87  IVLFNTMARGYSRSKTPIRAIFLFVELLNSG-----LLPDDYSFPSLLKACACVGAEALE 141
             L+N M R Y  +K  + AI ++ ++L +      + PD ++FP ++K+CA  G    +
Sbjct: 77  AFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCA--GLMCYD 134

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN------- 194
            GKQ+H    K G  SN  V  +L+ +Y +C  ++ A R+FE ++E   VS+N       
Sbjct: 135 LGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHV 194

Query: 195 ------------------------AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLS 230
                                   AI++ YAR     +AL  FR +Q   ++P +++++S
Sbjct: 195 RLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVS 254

Query: 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290
            L  CA LG+L+LGKWIH Y  K G  + + V  ALI+M+AKCG +D    +FD M  +D
Sbjct: 255 VLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERD 314

Query: 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350
             +WS MIV  A HG+  ++I +F+EM KA++ P  ITF+GLL AC+H GL++EG  YF 
Sbjct: 315 VISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFE 374

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
           SM+  Y I PG++HYGC+V+LLG +GRLD+A   + ++P K    +W +LLSSC SH NL
Sbjct: 375 SMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNL 434

Query: 411 GLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEV 470
            +A   +E + EL+ +  G+YV+LSNL A  G+W+ V  +RKLM+ + + K PGCSSIEV
Sbjct: 435 KIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEV 494

Query: 471 NNVVREFFSGDGVHSYSTDLQKALDELV 498
           +N+V+EF SGD    +S  + + L  LV
Sbjct: 495 DNMVQEFASGDDSKPFSKAICRVLKLLV 522



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 173/377 (45%), Gaps = 53/377 (14%)

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
           F  +LK C       + E K++H   +K  L+ + ++ T ++++     + E A  +F+ 
Sbjct: 17  FVPILKDCP-----NIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKG 71

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFREL-----QERNLKPTDVTMLSALSSCALLG 239
           +++P    YNA+I AY  +     A+++++++      E  + P   T    + SCA L 
Sbjct: 72  VADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLM 131

Query: 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIV 299
             DLGK +H ++ K+G      V  +L++M+ KC  LDDA  VF+ M+ +D  +W+ +I 
Sbjct: 132 CYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLIS 191

Query: 300 AYATHGQGHKSILMFEEMMKAQ-------------------------------VSPDEIT 328
            +   GQ  ++  +FEEM                                   + PDEI+
Sbjct: 192 GHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEIS 251

Query: 329 FLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
            + +L  C+  G ++ G W + Y+  DK G +  I     ++++  + G +D+  R  D+
Sbjct: 252 LVSVLPDCAQLGALELGKWIHIYA--DKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQ 309

Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI----LSNLCARAGR 443
           +  +   I W T++   ++H   G A++ IE   E+  +     +I    L   CA AG 
Sbjct: 310 MKERDV-ISWSTMIVGLANH---GRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGL 365

Query: 444 W-EDVDYLRKLMKDRGV 459
             E + Y   + +D  +
Sbjct: 366 LNEGLRYFESMKRDYNI 382


>gi|357464871|ref|XP_003602717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491765|gb|AES72968.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 554

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/525 (39%), Positives = 317/525 (60%), Gaps = 21/525 (4%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP-DIVLFNTMARGY 97
           ++HA  IKT    + + L      C+  P  +      LL  R+P P D   +NT+ +  
Sbjct: 6   KLHATLIKTGQHQNPHSLRPFFLTCSNYPAAARYAATVLL--RLPTPPDPFSYNTIIKHV 63

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           S    P  AI LF  +  + +  D ++FP +LK        +L           KLG ++
Sbjct: 64  S----PTGAISLFSHMHRNSVPFDHFTFPLILKHHHHHLLHSL---------IFKLGFDT 110

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           N++V   LIN Y     ++ A ++F+ +    +VS++ +I+   +++ P EALS+F+++Q
Sbjct: 111 NIFVQNALINAYGSRGSLDVAVKLFDEMRRRDIVSWSTLISCLVKNNLPAEALSVFQQMQ 170

Query: 218 --ERNLKP--TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273
              R+++       MLS +S+ + LG ++LG W+H +I + G+   V + TALI+M+++C
Sbjct: 171 MGHRDIRNWLDRAIMLSVISAVSSLGVIELGIWVHSFIVRMGIVMTVPLGTALINMYSRC 230

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
           G +D +V VFD M  ++   W+A+I   A HG+  +++ +F EM ++ + PD   F+G+L
Sbjct: 231 GLIDRSVKVFDEMPERNVVTWTALINGLAVHGRSREALKVFYEMKESGLKPDGALFIGVL 290

Query: 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
            ACSH GLV++GW  F SMRD++GI P ++HYGCMVDLLGRAG + EA+ F++E+P+K  
Sbjct: 291 VACSHGGLVEDGWRVFESMRDEFGIKPMLEHYGCMVDLLGRAGLILEAFDFVEEMPLKPN 350

Query: 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKL 453
            ++WRTLL +C +HN+LGLA++  ERI ELD  H GDYV+LSN   R G W     LR  
Sbjct: 351 SVIWRTLLGACVNHNHLGLAEKARERIIELDPYHDGDYVLLSNAYGRVGNWGGKAGLRNS 410

Query: 454 MKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLV 513
           MK   ++K PG S + ++ VV EF SGD VH    ++ K L  ++  +K+ GY P+TS V
Sbjct: 411 MKQNRIVKEPGLSFVHIDQVVHEFVSGDHVHPQWEEITKFLASIIDTVKLGGYTPNTSSV 470

Query: 514 HHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            H D++DEEKE  L YHSEKLA+ F LL      TIRV+KNLR+C
Sbjct: 471 LH-DIQDEEKEHCLGYHSEKLAVAFVLLYHRDRRTIRVIKNLRIC 514


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 225/598 (37%), Positives = 324/598 (54%), Gaps = 74/598 (12%)

Query: 31  CTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDI 87
           C +   LKQ+H    K  L    + LTKL+N   +  +  S+++A   F+   E    D 
Sbjct: 35  CKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDD 94

Query: 88  VLF--NTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
            LF  N++ RGYS +     AI L+V +L  G+ P+ Y+FP +L  C  + A    EG Q
Sbjct: 95  ALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAA--FCEGIQ 152

Query: 146 LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSR 205
           +H   +K+GL  ++++   LI+ YAEC  ++   ++FE +SE  VVS+ ++I  YAR  R
Sbjct: 153 VHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDR 212

Query: 206 PNEALSL-----------------------------FRELQERNL--------------- 221
           P EA+SL                             F E  +RNL               
Sbjct: 213 PKEAVSLFFEMLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGL 272

Query: 222 ----------------KPTDVTMLSALSSCALLGSLDLGK-----WIHEYIKKYGLDKYV 260
                           +P  VTMLSA+S+ A L  L  GK     W+H YI+K G+   +
Sbjct: 273 AREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDM 332

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
           ++NTAL+DM A+CG    A+ VF+ M+ +D  AW+A I   A  G G  +  +F +M+  
Sbjct: 333 RLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQ 392

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
            V PD + F+ +L ACSH G V++G + F  M D +GI P I+HYGCMVDLLGRAG L E
Sbjct: 393 GVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMED-HGISPQIEHYGCMVDLLGRAGLLRE 451

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           A+  I  +P++   ++W +LL++C  H N+ +A    ERI EL     G +V+LSN+ A 
Sbjct: 452 AFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYAS 511

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
           AG+W DV  +R  ++++GV KVPG SS++VN V+ EF SGD  H   T +   L E+   
Sbjct: 512 AGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCR 571

Query: 501 LKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
               G++PD S V   D++++EKE  L  HSEKLAI FGL+ T     IRVVKNLR+C
Sbjct: 572 FSDAGHIPDLSNVLL-DVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMC 628


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/545 (38%), Positives = 326/545 (59%), Gaps = 12/545 (2%)

Query: 20  NTPNALSLLPRCTS---FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           ++   +SLL  CT    F     IH+ +IK  L+++L V  KLI+   +     S++   
Sbjct: 246 DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAE---FGSLKDCQ 302

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +FDR+   D++ +N++ + Y  ++ P+RAI LF E+  S + PD  +  SL    + +G
Sbjct: 303 KVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLG 362

Query: 137 AEALEEGKQLHCFAIKLG-LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
              +   + +  F ++ G    ++ +   ++ +YA+   V++AR +F  +    V+S+N 
Sbjct: 363 E--IRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNT 420

Query: 196 IITAYARSSRPNEALSLFRELQERN--LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           II+ YA++   +EA+ ++  ++E    +     T +S L +C+  G+L  G  +H  + K
Sbjct: 421 IISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLK 480

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
            GL   V V T+L DM+ KCGRLDDA+S+F  +   ++  W+ +I  +  HG G K++++
Sbjct: 481 NGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVML 540

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           F+EM+   V PD ITF+ LL ACSH+GLVDEG   F  M+  YGI P +KHYGCMVDL G
Sbjct: 541 FKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYG 600

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI 433
           RAG+L+ A  FI  +P++    +W  LLS+C  H N+ L K   E +FE++  H G +V+
Sbjct: 601 RAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVL 660

Query: 434 LSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKA 493
           LSN+ A AG+WE VD +R +   +G+ K PG SS+EV+N V  F++G+  H    ++ + 
Sbjct: 661 LSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRE 720

Query: 494 LDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVK 553
           L  L ++LKMVGYVPD   V   D+ED+EKE  L  HSE+LA+ F L+ TP  TTIR+ K
Sbjct: 721 LTALHEKLKMVGYVPDHRFVLQ-DVEDDEKEHILMSHSERLAMAFALITTPAKTTIRIFK 779

Query: 554 NLRVC 558
           NLRVC
Sbjct: 780 NLRVC 784



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 139/450 (30%), Positives = 229/450 (50%), Gaps = 45/450 (10%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPE 84
           +L   CT+ +  K +HA  + ++   ++ +  KL+N +C       ++  A   FD I  
Sbjct: 59  TLFRYCTNLQSAKCLHARLVVSNAIQNVCISAKLVNLYCY----LGNVALARYTFDHIHN 114

Query: 85  PDIVLFNTMARGYSR---SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
            D+  +N M  GY R   S   IR   LF  +L+SGL PD  +FPS+LKAC  V      
Sbjct: 115 RDVYAWNLMISGYGRAGYSSEVIRCFSLF--MLSSGLQPDYRTFPSVLKACRNV-----T 167

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           +G ++HC A+K G   ++YV  +LI+LY     V  AR +F+ +    + S+NA+I+ Y 
Sbjct: 168 DGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYC 227

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           +S    EAL+L   L+  +     VT++S LS+C   G  + G  IH Y  K+GL+  + 
Sbjct: 228 QSGNAKEALTLSDGLRAMD----SVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELF 283

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V+  LID++A+ G L D   VFD M  +D  +W+++I AY  + Q  ++IL+F+EM  ++
Sbjct: 284 VSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSR 343

Query: 322 VSPDEITFLGLLYACSHTGLVD-----EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           + PD +T + L    S  G +      +G    +++R  +  +  I     +V +  + G
Sbjct: 344 IQPDCLTLISLASILSQLGEIRACRSVQG----FTLRKGW-FLEDITIGNAVVVMYAKLG 398

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG------GD 430
            +D A    + LP K   I W T++S  + +   G A + IE    +++  G      G 
Sbjct: 399 LVDSARAVFNWLPNKDV-ISWNTIISGYAQN---GFASEAIEMYNIMEEEGGEISANQGT 454

Query: 431 YVILSNLCARAGRWEDVDYLRKLMKDRGVL 460
           +V +   C++AG       LR+ MK  G L
Sbjct: 455 WVSVLPACSQAGA------LRQGMKLHGRL 478


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/563 (38%), Positives = 333/563 (59%), Gaps = 39/563 (6%)

Query: 26  SLLPRCTSF---RGLKQIHAVTIKTH--LQNDL--NVLTKLINFCTQNPTTSSMEHAHLL 78
           S+LP C+     R  K+IHA  ++T   ++N    + L  +   C Q      +E   L+
Sbjct: 221 SVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQ------VESGRLV 274

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVEL-LNSGLLPDDYSFPSLLKACACVGA 137
           FD + +  I L+N M  GY++S+   +A+ LF+E+   +GL  +  +  S++ A   V  
Sbjct: 275 FDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAY--VRC 332

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
           E +   + +H + IK GL +N Y+   LI++Y+   D++ ++RIF+++ +  +VS+N II
Sbjct: 333 EGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTII 392

Query: 198 TAYARSSRPNEALSLFRELQ---ERN-------------LKPTDVTMLSALSSCALLGSL 241
           T+Y    R ++AL L  E+Q   E++              KP  +T+++ L  CA L +L
Sbjct: 393 TSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSAL 452

Query: 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
             GK IH Y  +  L   V V +AL+DM+AKCG L+ A  VFD M  ++   W+ +I+AY
Sbjct: 453 AKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAY 512

Query: 302 ATHGQGHKSILMFEEMMK-----AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKY 356
             HG+G +S+ +FE+M+       +V P E+TF+ L  +CSH+G+VDEG + F+ M++++
Sbjct: 513 GMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEH 572

Query: 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI-LWRTLLSSCSSHNNLGLAKQ 415
           GI P   HY C+VDL+GRAG+++EAY  ++ +P     +  W +LL +C  ++N+ + + 
Sbjct: 573 GIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEI 632

Query: 416 VIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVR 475
             E + +L       YV+LSN+ + AG W+    LR+ MK  GV K PGCS IE  + V 
Sbjct: 633 AAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVH 692

Query: 476 EFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLA 535
           +F +GD  H  S  L   L+ L + LK  GYVPDT+ V H D+++EEKE  L  HSEKLA
Sbjct: 693 KFLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTACVLH-DIDEEEKETILCGHSEKLA 751

Query: 536 ITFGLLNTPPGTTIRVVKNLRVC 558
           I FG+LNTPPGTTIRV KNLRVC
Sbjct: 752 IAFGILNTPPGTTIRVAKNLRVC 774



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 208/422 (49%), Gaps = 39/422 (9%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           ++ A  L     + D+V +N+M   +S+++  + A+     ++  G+ PD  +F S+L A
Sbjct: 166 LDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPA 225

Query: 132 CACVGAEALEEGKQLHCFAIKL-GLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV 190
           C+ +  + L  GK++H +A++   +  N +V + L+++Y  C  VE+ R +F+++ +  +
Sbjct: 226 CSHL--DLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKI 283

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQ-ERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
             +NA+I  YA+S    +AL LF E++    L     TM S + +      +   + IH 
Sbjct: 284 GLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHG 343

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
           Y+ K GL+    +  ALIDM+++ G +  +  +FD+M  +D  +W+ +I +Y   G+   
Sbjct: 344 YVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSD 403

Query: 310 SILMFEEMMKAQ----------------VSPDEITFLGLLYACSHTGLVDEGWN-YFYSM 352
           ++L+  EM + +                  P+ IT + +L  C+    + +G   + Y++
Sbjct: 404 ALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAI 463

Query: 353 RDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGL 412
           R+   +   +     +VD+  + G L+ A R  D++PI++  I W  ++ +   H   G 
Sbjct: 464 RNL--LASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNV-ITWNVIIMAYGMH---GK 517

Query: 413 AKQVIERIFE---LDDSHGGD-------YVILSNLCARAGRW-EDVDYLRKLMKDRGVLK 461
            K+ +E +FE    + + GG+       ++ L   C+ +G   E +    K+  + G+  
Sbjct: 518 GKESLE-LFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEP 576

Query: 462 VP 463
            P
Sbjct: 577 AP 578



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 157/296 (53%), Gaps = 11/296 (3%)

Query: 113 LLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN--SNLYVCTTLINLYA 170
           ++ SG  PD+++FP++LKA A  G + L  GKQ+H    K G    S++ +  TL+N+Y 
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVA--GIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYG 58

Query: 171 ECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLS 230
           +C  +  A ++F+ I+E   VS+N+II+A  R      A+  FR +     +P+  T++S
Sbjct: 59  KCGGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVS 118

Query: 231 ALSSCALLGSLD---LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS 287
              +C+ L   D   LGK IH    + G  +    N AL+ M+AK GRLDDA S+     
Sbjct: 119 MALACSNLRKRDGLWLGKQIHGCCFRKGHWRTFS-NNALMAMYAKLGRLDDAKSLLVLFE 177

Query: 288 GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN 347
            +D   W++MI +++ + +  ++++    M+   V PD +TF  +L ACSH  L+  G  
Sbjct: 178 DRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKE 237

Query: 348 -YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
            + Y++R    ++        +VD+    G++ E+ R + +  +     LW  +++
Sbjct: 238 IHAYALRTD-DVIENSFVGSALVDMYCNCGQV-ESGRLVFDSVLDRKIGLWNAMIA 291


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/522 (37%), Positives = 318/522 (60%), Gaps = 4/522 (0%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +Q+H+  I+  L  D  V   LIN   +     SM  A  +FD+I + ++  +  M  GY
Sbjct: 291 QQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGY 350

Query: 98  -SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
             +      A+ LF  ++ + ++P+ ++F S LKACA + A  L  G+Q+   A+KLG +
Sbjct: 351 VQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAA--LRIGEQVFTHAVKLGFS 408

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
           S   V  +LI++YA    ++ AR+ F+ + E  ++SYN +I AYA++    EAL LF E+
Sbjct: 409 SVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEI 468

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           +++ +  +  T  S LS  A +G++  G+ IH  + K GL     V  ALI M+++CG +
Sbjct: 469 EDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNI 528

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           + A  VF++M  ++  +W+++I  +A HG   +++ +F +M++  V P+E+T++ +L AC
Sbjct: 529 ESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSAC 588

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           SH GLV+EGW +F SM  ++G++P ++HY C+VD+LGR+G L EA +FI+ +P K+  ++
Sbjct: 589 SHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALV 648

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
           WRT L +C  H NL L K   + I E +      Y++LSNL A   +W++V  +RK MK+
Sbjct: 649 WRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKE 708

Query: 457 RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHG 516
           + ++K  GCS +EV N V +F+ GD  H  + ++   L  L  ++K +GYVP+   V H 
Sbjct: 709 KXLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLH- 767

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           D+E+E+KE  L  HSEK+A+ FGL++T     IRV KNLR+C
Sbjct: 768 DVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRIC 809



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 197/414 (47%), Gaps = 31/414 (7%)

Query: 30  RCTSFRGLKQIHAVTIKTHLQND---LNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP- 85
           R  SF     +H    ++ LQ D   LN L  L + C Q       E A  +F  +    
Sbjct: 78  RTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQ------WEKATSIFRLMGSSR 131

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
           D++ ++ M   ++ +    RA+  FV+++ +G  P++Y F +  +AC+   AE +  G  
Sbjct: 132 DLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST--AEFVSVGDS 189

Query: 146 LHCFAIKLG-LNSNLYVCTTLINLYAEC-SDVEAARRIFENISEPCVVSYNAIITAYARS 203
           +  F IK G L S++ V   LI+++ +   D+ +A ++FE + E   V++  +IT   + 
Sbjct: 190 IFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQF 249

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
               EA+ LF ++     +P   T+   +S+CA +  L LG+ +H    ++GL     V 
Sbjct: 250 GYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVG 309

Query: 264 TALIDMHAKC---GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL-MFEEMMK 319
             LI+M+AKC   G +  A  +FD +   +  +W+AMI  Y   G   +  L +F  M+ 
Sbjct: 310 CCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMIL 369

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC----MVDLLGRA 375
             V P+  TF   L AC++   +  G   F      + +  G     C    ++ +  R+
Sbjct: 370 THVIPNHFTFSSTLKACANLAALRIGEQVF-----THAVKLGFSSVNCVANSLISMYARS 424

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429
           GR+D+A +  D L  +   I + T++ + + + N   +++ +E   E++D   G
Sbjct: 425 GRIDDARKAFDIL-FEKNLISYNTVIDAYAKNLN---SEEALELFNEIEDQGMG 474



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 135/290 (46%), Gaps = 9/290 (3%)

Query: 105 RAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTT 164
           +AI     +++ G  PD  ++   LK C  +   + + G  +H    +  L  +     +
Sbjct: 49  KAISTLEHMVHQGSHPDLQTYSLFLKKC--IRTRSFDIGTLVHEKLTQSDLQLDSVTLNS 106

Query: 165 LINLYAECSDVEAARRIFENI-SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKP 223
           LI+LY++C   E A  IF  + S   ++S++A+++ +A ++    AL  F ++ E    P
Sbjct: 107 LISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYP 166

Query: 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYG-LDKYVKVNTALIDMHAKC-GRLDDAVS 281
            +    +A  +C+    + +G  I  ++ K G L   V V   LIDM  K  G L  A  
Sbjct: 167 NEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFK 226

Query: 282 VFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341
           VF+ M  ++   W+ MI      G   ++I +F +M+ +   PD  T  G++ AC++  L
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMEL 286

Query: 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA---GRLDEAYRFIDEL 388
           +  G    +S   ++G+        C++++  +    G +  A +  D++
Sbjct: 287 LLLG-QQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQI 335



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 97/203 (47%), Gaps = 5/203 (2%)

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
           + R ++A+S    +  +   P   T    L  C    S D+G  +HE + +  L      
Sbjct: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103

Query: 263 NTALIDMHAKCGRLDDAVSVFDNM-SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
             +LI +++KCG+ + A S+F  M S +D  +WSAM+  +A +  G +++L F +M++  
Sbjct: 104 LNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC-MVDLLGRA-GRLD 379
             P+E  F     ACS    V  G +  +    K G +      GC ++D+  +  G L 
Sbjct: 164 YYPNEYCFAAATRACSTAEFVSVG-DSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLV 222

Query: 380 EAYRFIDELPIKSTPILWRTLLS 402
            A++  +++P +   + W  +++
Sbjct: 223 SAFKVFEKMP-ERNAVTWTLMIT 244


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/503 (39%), Positives = 305/503 (60%), Gaps = 19/503 (3%)

Query: 72  MEHAHLLFDRIPEP----DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPS 127
            E A  LF+++ E     D+V ++    GY++      A+ +  ++L+SG+ P++ +  S
Sbjct: 311 FEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLIS 370

Query: 128 LLKACACVGAEALEEGKQLHCFAIKL-------GLNSNLYVCTTLINLYAECSDVEAARR 180
           +L  CA VGA  L  GK++HC+AIK        G      V   LI++YA+C  V+ AR 
Sbjct: 371 VLSGCASVGA--LMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARA 428

Query: 181 IFENIS--EPCVVSYNAIITAYARSSRPNEALSLFRELQERNL--KPTDVTMLSALSSCA 236
           +F+++S  E  VV++  +I  Y++    N+AL L  E+ E +   +P   T+  AL +CA
Sbjct: 429 MFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACA 488

Query: 237 LLGSLDLGKWIHEYIKKYGLDKY-VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWS 295
            L +L +GK IH Y  +   +   + V+  LIDM+AKCG + DA  VFDNM  K+   W+
Sbjct: 489 SLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWT 548

Query: 296 AMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355
           +++  Y  HG G +++ +F+EM +     D +T L +LYACSH+G++D+G  YF  M+  
Sbjct: 549 SLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTV 608

Query: 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQ 415
           +G+ PG +HY C+VDLLGRAGRL+ A R I+E+P++  P++W   LS C  H  + L + 
Sbjct: 609 FGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEY 668

Query: 416 VIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVR 475
             E+I EL  +H G Y +LSNL A AGRW+DV  +R LM+ +GV K PGCS +E      
Sbjct: 669 AAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTT 728

Query: 476 EFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLA 535
            FF GD  H ++ ++ + L + ++ +K +GYVP+T    H D++DEEK+  L  HSEKLA
Sbjct: 729 TFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALH-DVDDEEKDDLLFEHSEKLA 787

Query: 536 ITFGLLNTPPGTTIRVVKNLRVC 558
           + +G+L TP G  IR+ KNLRVC
Sbjct: 788 LAYGILTTPQGAAIRITKNLRVC 810



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 120/468 (25%), Positives = 220/468 (47%), Gaps = 67/468 (14%)

Query: 3   TTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINF 62
           +T +P IT   PP            + +C +   +K IH   +   +   LN+ + LI  
Sbjct: 24  STSAPEIT---PP-----------FIHKCKTISQVKLIHQKLLSFGILT-LNLTSHLI-- 66

Query: 63  CTQNPTTSSMEHAHLLFDRIPEPD--IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP 120
            +   +   + HA  L  R P  D  +  +N++ R Y  +    + ++LF  + +    P
Sbjct: 67  -STYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTP 125

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           D+Y+FP + KAC  +   ++  G+  H  ++  G  SN++V   L+ +Y+ C  +  AR+
Sbjct: 126 DNYTFPFVFKACGEI--SSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARK 183

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLF-RELQERNLKPTDVTMLSALSSCALLG 239
           +F+ +S   VVS+N+II +YA+  +P  AL +F R   E   +P ++T+++ L  CA LG
Sbjct: 184 VFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLG 243

Query: 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIV 299
           +  LGK +H +     + + + V   L+DM+AKCG +D+A +VF NMS KD  +W+AM+ 
Sbjct: 244 THSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVA 303

Query: 300 AYATHGQGHKSILMFE-----------------------------------EMMKAQVSP 324
            Y+  G+   ++ +FE                                   +M+ + + P
Sbjct: 304 GYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKP 363

Query: 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG-------CMVDLLGRAGR 377
           +E+T + +L  C+  G +  G    +    KY I      +G        ++D+  +  +
Sbjct: 364 NEVTLISVLSGCASVGALMHG-KEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKK 422

Query: 378 LDEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
           +D A    D L P +   + W  ++   S H +   A +++  +FE D
Sbjct: 423 VDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEED 470



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 116/306 (37%), Gaps = 53/306 (17%)

Query: 18  CTNTPNALSL---LPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQN--PTT 69
           C   PNA ++   L  C S   L   KQIHA      L+N  N +   ++ C  +     
Sbjct: 471 CQTRPNAFTISCALVACASLAALRIGKQIHAYA----LRNQQNAVPLFVSNCLIDMYAKC 526

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
            S+  A L+FD +   + V + ++  GY        A+ +F E+   G   D  +   +L
Sbjct: 527 GSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVL 586

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC 189
            AC+  G   +++G +                                 + +F     P 
Sbjct: 587 YACSHSG--MIDQGMEY----------------------------FNRMKTVFG--VSPG 614

Query: 190 VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
              Y  ++    R+ R N AL L  E+    ++P  V  ++ LS C + G ++LG++  E
Sbjct: 615 PEHYACLVDLLGRAGRLNAALRLIEEMP---MEPPPVVWVAFLSCCRIHGKVELGEYAAE 671

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ-----AWSAMIVAYATH 304
            I +     +    T L +++A  GR  D   +   M  K  +     +W   I    T 
Sbjct: 672 KITELA-SNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTF 730

Query: 305 GQGHKS 310
             G K+
Sbjct: 731 FVGDKT 736



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 13/205 (6%)

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA--WSAMIVAYA 302
           K IH+ +  +G+   + + + LI  +   G L  AVS+       D     W+++I +Y 
Sbjct: 45  KLIHQKLLSFGILT-LNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYG 103

Query: 303 THGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI 362
            +G  +K + +F  M     +PD  TF  +  AC     V  G    +++    G +  +
Sbjct: 104 DNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCG-ESAHALSLVTGFISNV 162

Query: 363 KHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
                +V +  R   L +A +  DE+ +    + W +++    S+  LG  K  +E    
Sbjct: 163 FVGNALVAMYSRCRSLSDARKVFDEMSVWDV-VSWNSII---ESYAKLGKPKVALEMFSR 218

Query: 423 LDDSHG--GDYVILSNL---CARAG 442
           + +  G   D + L N+   CA  G
Sbjct: 219 MTNEFGCRPDNITLVNVLPPCASLG 243


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/535 (36%), Positives = 327/535 (61%), Gaps = 21/535 (3%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQ------------NPTTSSMEHAHLLFDRIPEPDI 87
           +HA T++  L +DL +   LIN   +                S ++    +FD +P  D+
Sbjct: 132 LHACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDV 191

Query: 88  VLFNTMARGYSRSKTPIRAIFLFVELLNSGLL-PDDYSFPSLLKACACVGAEALE--EGK 144
           V +NT+  G++++   + A+ +  E+  +G L PD ++  S+L     + AE ++  +GK
Sbjct: 192 VSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILP----IFAEHVDVNKGK 247

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           ++H +A++ G + ++++ ++LI++YA+C+ +E + R F  +     +S+N+II    ++ 
Sbjct: 248 EIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNG 307

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
             +  L  FR + + N+KP  V+  S + +CA L +L LG+ +H  I + G D    + +
Sbjct: 308 EFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIAS 367

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
           +L+DM+AKCG +  A  VFD +  +D  AW+A+I+  A HG    ++ +FE M++  V P
Sbjct: 368 SLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRP 427

Query: 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF 384
             + F+ +L ACSH GLVDEGW YF SM   +GI PG++HY  + DLLGRAGRL+EAY F
Sbjct: 428 CYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDF 487

Query: 385 IDEL-PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443
           I  +  ++ T  +W  LL++C +H ++ LA++V++++  +D  + G YV++SN+ + A R
Sbjct: 488 ISNMRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQR 547

Query: 444 WEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKM 503
           W+D   LR  M+ +G+ K P CS IEV N V  F +GD  H Y   + KALD L+++++ 
Sbjct: 548 WKDAARLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQMEK 607

Query: 504 VGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            GYV DT+ V H D+++E K   L  HSE+LAI +G+++T  GTTIRV+KN+RVC
Sbjct: 608 EGYVIDTNQVLH-DVDEELKRELLHNHSERLAIAYGIISTTAGTTIRVIKNIRVC 661



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 114/433 (26%), Positives = 201/433 (46%), Gaps = 35/433 (8%)

Query: 10  TQSPPPKLCTNTPN-ALSLLPRCTSFRGLKQIHAVTIKTH--LQNDLNVLTKLINFCTQN 66
           TQ    K+   TPN  LS+     S R  KQ+HA  +KT   L +D N+L       +  
Sbjct: 5   TQHTISKILRKTPNKTLSV-----STRQAKQLHAHIVKTKGTLHSD-NILVL-----SLY 53

Query: 67  PTTSSMEHA-HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSF 125
              + ++H+ HL       P  + ++++ + Y+       +   F  + +  + P+ + F
Sbjct: 54  SNLNLLQHSLHLFNSLPSPPPPLAWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVF 113

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC------------- 172
           PSLLKA   +    L     LH   ++LGL+S+LY+   LIN YA+              
Sbjct: 114 PSLLKASTLLKHHKL--AHSLHACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKR 171

Query: 173 --SDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL-QERNLKPTDVTML 229
             S ++  +++F+ +    VVS+N +I  +A++    EAL + RE+ +   LKP   T+ 
Sbjct: 172 GESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLS 231

Query: 230 SALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK 289
           S L   A    ++ GK IH Y  + G D  V + ++LIDM+AKC RL+ ++  F  +  K
Sbjct: 232 SILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRK 291

Query: 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYF 349
           D  +W+++I     +G+  + +  F  M+K  V P  ++F  ++ AC+H   +  G    
Sbjct: 292 DAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLG-RQL 350

Query: 350 YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
           +    + G          +VD+  + G +  A    D +  K   + W  ++  C+ H +
Sbjct: 351 HGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRID-KRDMVAWTAIIMGCAMHGH 409

Query: 410 LGLAKQVIERIFE 422
              A  + E + E
Sbjct: 410 ALDAVSLFENMLE 422


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/522 (37%), Positives = 317/522 (60%), Gaps = 4/522 (0%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +Q+H+  I+  L  D  V   LIN   +     SM  A  +FD+I + ++  +  M  GY
Sbjct: 291 QQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGY 350

Query: 98  -SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
             +      A+ LF  ++ + ++P+ ++F S LKACA + A  L  G+Q+   A+KLG +
Sbjct: 351 VQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAA--LRIGEQVFTHAVKLGFS 408

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
           S   V  +LI++YA    ++ AR+ F+ + E  ++SYN +I AYA++    EAL LF E+
Sbjct: 409 SVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEI 468

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           +++ +  +  T  S LS  A +G++  G+ IH  + K GL     V  ALI M+++CG +
Sbjct: 469 EDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNI 528

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           + A  VF++M  ++  +W+++I  +A HG   +++ +F +M++  V P+ +T++ +L AC
Sbjct: 529 ESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSAC 588

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           SH GLV+EGW +F SM  ++G++P ++HY CMVD+LGR+G L EA +FI+ +P K+  ++
Sbjct: 589 SHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALV 648

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
           WRT L +C  H NL L K   + I E +      Y++LSNL A   +W++V  +RK MK+
Sbjct: 649 WRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKE 708

Query: 457 RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHG 516
           + ++K  GCS +EV N V +F+ GD  H  + ++   L  L  ++K +GYVP+   V H 
Sbjct: 709 KNLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLH- 767

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           D+E+E+KE  L  HSEK+A+ FGL++T     IRV KNLR+C
Sbjct: 768 DVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRIC 809



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 197/414 (47%), Gaps = 31/414 (7%)

Query: 30  RCTSFRGLKQIHAVTIKTHLQND---LNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP- 85
           R  SF     +H    ++ LQ D   LN L  L + C Q       E A  +F  +    
Sbjct: 78  RTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQ------WEKATSIFQLMGSSR 131

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
           D++ ++ M   ++ +    RA+  FV+++ +G  P++Y F +  +AC+   AE +  G  
Sbjct: 132 DLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST--AEFVSVGDS 189

Query: 146 LHCFAIKLG-LNSNLYVCTTLINLYAEC-SDVEAARRIFENISEPCVVSYNAIITAYARS 203
           +  F +K G L S++ V   LI+++ +   D+ +A ++FE + E   V++  +IT   + 
Sbjct: 190 IFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQF 249

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
               EA+ LF E+     +P   T+   +S+CA +  L LG+ +H    ++GL     V 
Sbjct: 250 GYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVG 309

Query: 264 TALIDMHAKC---GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL-MFEEMMK 319
             LI+M+AKC   G +  A  +FD +   +  +W+AMI  Y   G   +  L +F  M+ 
Sbjct: 310 CCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMIL 369

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC----MVDLLGRA 375
             V P+  TF   L AC++   +  G   F      + +  G     C    ++ +  R+
Sbjct: 370 THVIPNHFTFSSTLKACANLAALRIGEQVF-----THAVKLGFSSVNCVANSLISMYARS 424

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429
           GR+D+A +  D L  +   I + T++ + + + N   +++ +E   E++D   G
Sbjct: 425 GRIDDARKAFDIL-FEKNLISYNTVIDAYAKNLN---SEEALELFNEIEDQGMG 474



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 136/290 (46%), Gaps = 9/290 (3%)

Query: 105 RAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTT 164
           +AI     +++ G  PD  ++   LK C  +   + + G  +H    +  L  +     +
Sbjct: 49  KAISTLEHMVHQGSHPDLQTYSLFLKKC--IRTRSFDIGTLVHEKLTQSDLQLDSVTLNS 106

Query: 165 LINLYAECSDVEAARRIFENI-SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKP 223
           LI+LY++C   E A  IF+ + S   ++S++A+++ +A ++    AL  F ++ E    P
Sbjct: 107 LISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYP 166

Query: 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYG-LDKYVKVNTALIDMHAKC-GRLDDAVS 281
            +    +A  +C+    + +G  I  ++ K G L   V V   LIDM  K  G L  A  
Sbjct: 167 NEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFK 226

Query: 282 VFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341
           VF+ M  ++   W+ MI      G   ++I +F EM+ +   PD  T  G++ AC++  L
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMEL 286

Query: 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA---GRLDEAYRFIDEL 388
           +  G    +S   ++G+        C++++  +    G +  A +  D++
Sbjct: 287 LLLG-QQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQI 335



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 104/224 (46%), Gaps = 8/224 (3%)

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
           + R ++A+S    +  +   P   T    L  C    S D+G  +HE + +  L      
Sbjct: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103

Query: 263 NTALIDMHAKCGRLDDAVSVFDNM-SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
             +LI +++KCG+ + A S+F  M S +D  +WSAM+  +A +  G +++L F +M++  
Sbjct: 104 LNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC-MVDLLGRA-GRLD 379
             P+E  F     ACS    V  G +  +    K G +      GC ++D+  +  G L 
Sbjct: 164 YYPNEYCFAAATRACSTAEFVSVG-DSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLV 222

Query: 380 EAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
            A++  +++P +   + W  +++        G A + I+   E+
Sbjct: 223 SAFKVFEKMP-ERNAVTWTLMITRLM---QFGYAGEAIDLFLEM 262


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/547 (36%), Positives = 326/547 (59%), Gaps = 10/547 (1%)

Query: 16  KLCTNTPNALSLLPRC---TSFRGLKQIHAVTIK-THLQNDLNVLTKLINFCTQNPTTSS 71
           K+  N    L++LP C     F  LK+IH   ++   +Q+D  V      F        S
Sbjct: 395 KVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANA---FVAGYAKCGS 451

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           + +A  +F  +    +  +N +  G+ ++  P +A+ L++ +  SGL PD ++  SLL A
Sbjct: 452 LHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSA 511

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           CA +  ++L  GK++H   ++ G   + ++C +L++LY +C  +  A+  F+N+ E  +V
Sbjct: 512 CARL--KSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLV 569

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
            +N +I  ++++  P +AL +F ++    + P +++++ AL +C+ + +L LGK +H + 
Sbjct: 570 CWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFA 629

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            K  L ++  V  +LIDM+AKCG ++ + ++FD +  K    W+ +I  Y  HG G K+I
Sbjct: 630 VKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAI 689

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +F+ M  A   PD +TF+ LL AC+H GLV EG  Y   M+  +GI P ++HY C+VD+
Sbjct: 690 ELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDM 749

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
           LGRAGRL+EA   ++ELP K    +W +LLSSC ++ +L + ++V  ++ EL      +Y
Sbjct: 750 LGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENY 809

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           V++SN  AR G+W++V  +R+ MK+ G+ K  GCS IE+   V  F  GD     S  +Q
Sbjct: 810 VLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQ 869

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
           +   EL K++  +GY PDTS V H ++E++EK   LR HSEKLAI+FGLLNT  GTT+RV
Sbjct: 870 QTWIELEKKINKIGYKPDTSCVLH-ELEEDEKIKILRNHSEKLAISFGLLNTAKGTTLRV 928

Query: 552 VKNLRVC 558
            KNLR+C
Sbjct: 929 CKNLRIC 935



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 177/318 (55%), Gaps = 14/318 (4%)

Query: 27  LLPRCTSFRGL---KQIHA-VTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           LL  C  ++ +   ++IH  ++   H QND+ ++T+L+   T      S   + L+F+  
Sbjct: 99  LLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLV---TMYSICDSPYDSCLVFNAS 155

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN-SGLLPDDYSFPSLLKACACVGAEALE 141
              ++ L+N +  GY R+     A+F+FVE+++ +  +PD+++ P ++KAC  VG   + 
Sbjct: 156 RRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKAC--VGVYDVR 213

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G+ +H FA+K  + S+++V   LI +Y +   VE+A ++F+ + +  +VS+N+++ A  
Sbjct: 214 LGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACL 273

Query: 202 RSSRPNEALSLFREL--QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
            +    E+  LF+ L   +  L P   TM++ +  CA  G + LG   H    K GL   
Sbjct: 274 ENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGE 333

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM-M 318
           +KVN++L+DM++KCG L +A  +FD  + K+  +W++MI  Y+       +  +  +M M
Sbjct: 334 LKVNSSLLDMYSKCGYLCEARVLFDT-NEKNVISWNSMIGGYSKDRDFRGAFELLRKMQM 392

Query: 319 KAQVSPDEITFLGLLYAC 336
           + +V  +E+T L +L  C
Sbjct: 393 EDKVKVNEVTLLNVLPVC 410


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/523 (38%), Positives = 320/523 (61%), Gaps = 5/523 (0%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
            KQ HA  +K  L  D    + L+  C  +    SM++A  +F ++ EP    FNTM RG
Sbjct: 4   FKQSHARILKXGLFXDSFCASNLVATCALSDW-GSMDYACSIFRQMDEPGSFZFNTMMRG 62

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           + +      A+  + E+   G+ PD++++P+LLKACA +   A+EEG Q+H   +KLGL 
Sbjct: 63  HVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARL--PAVEEGMQVHAHILKLGLE 120

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
           ++++V  +LI++Y +C ++     +FE ++E  V S++A+ITA+A     ++ L L  ++
Sbjct: 121 NDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDM 180

Query: 217 -QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
             E   +  +  ++S LS+C  LG+LDLG+ +H ++ +      V V T+LI+M+ KCG 
Sbjct: 181 SNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGX 240

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           L   + +F  M+ K+  ++S MI   A HG G + + +F EM++  + PD+I ++G+L A
Sbjct: 241 LYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNA 300

Query: 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
           CSH GLV EG   F  M+ ++GI P I+HYGCMVDL+GRAG++DEA   I  +P++   +
Sbjct: 301 CSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDV 360

Query: 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455
           LWR+LLS+   HNNL   +   +++F+LD     DYV+LSN+ A+A RWEDV   R  M 
Sbjct: 361 LWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVARTRTNMF 420

Query: 456 DRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHH 515
            +G+ + PG S +EV   +  F S D  H  S  + + L ++  +LK  GY PDT+ V  
Sbjct: 421 SKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYXPDTTQV-L 479

Query: 516 GDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            D+++EEK+  L  HS+KLAI + L++T  G+ +R+V+NLR+C
Sbjct: 480 CDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPVRIVRNLRMC 522



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 156/311 (50%), Gaps = 14/311 (4%)

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYA--ECSDVEAARRIFENISEPCVVSYNAII 197
           +EE KQ H   +K GL  + +  + L+   A  +   ++ A  IF  + EP    +N ++
Sbjct: 1   MEEFKQSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMM 60

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
             + +     EAL  ++E+ ER +KP + T  + L +CA L +++ G  +H +I K GL+
Sbjct: 61  RGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLE 120

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
             V V  +LI M+ KCG +    +VF+ M+ +   +WSA+I A+A+ G     + +  +M
Sbjct: 121 NDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDM 180

Query: 318 M-KAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
             +     +E   + +L AC+H G +D G + + + +R+  G+   ++    ++++  + 
Sbjct: 181 SNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVE--TSLIEMYLKC 238

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN----NLGLAKQVIERIFELDDSHGGDY 431
           G L +      ++  K   + +  ++S  + H      L +  +++E+  E DD     Y
Sbjct: 239 GXLYKGMCLFQKMA-KKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDI---VY 294

Query: 432 VILSNLCARAG 442
           V + N C+ AG
Sbjct: 295 VGVLNACSHAG 305



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 138/289 (47%), Gaps = 14/289 (4%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINF---CTQNPTTSSMEHAHLL 78
           P  L    R  +     Q+HA  +K  L+ND+ V   LI+    C +     +      +
Sbjct: 92  PTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCA------V 145

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYS-FPSLLKACACVGA 137
           F+++ E  +  ++ +   ++        + L  ++ N G    + S   S+L AC  +G 
Sbjct: 146 FEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLG- 204

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
            AL+ G+ +H F ++     N+ V T+LI +Y +C  +     +F+ +++   +SY+ +I
Sbjct: 205 -ALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSYSVMI 263

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK-KYGL 256
           +  A      E L +F E+ E+ L+P D+  +  L++C+  G +  G      +K ++G+
Sbjct: 264 SGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGI 323

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA-WSAMIVAYATH 304
           +  ++    ++D+  + G++D+A+ +  +M  +     W +++ A   H
Sbjct: 324 EPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVH 372


>gi|218193985|gb|EEC76412.1| hypothetical protein OsI_14066 [Oryza sativa Indica Group]
          Length = 628

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/560 (36%), Positives = 312/560 (55%), Gaps = 31/560 (5%)

Query: 27  LLPRCTSFRGLKQIHAVTIKT----------HLQ---NDLNVLTKLINFCTQNPTTSSME 73
           L   C + R L+Q+HA    +          HL     DL  LT       + P  + M 
Sbjct: 50  LFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMS 109

Query: 74  ---------------HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118
                           A  LFD +PE ++  +N M  G +       ++ LF+++   G+
Sbjct: 110 WNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGLFLDMRREGM 169

Query: 119 LPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAA 178
            PD++   S+ + CA  G   +  G+Q+H + ++ GL+ ++ V ++L ++Y  C  ++  
Sbjct: 170 HPDEFGLGSVSRCCA--GLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEG 227

Query: 179 RRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL 238
             +   +    +VS N II    ++     AL  F  ++   +    VT +SA+SSC+ L
Sbjct: 228 EAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDL 287

Query: 239 GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMI 298
            +L  G+ IH  + K G+DK V V T L+ M+++CG L D+  VF    G DT   SAMI
Sbjct: 288 AALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMI 347

Query: 299 VAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGI 358
            AY  HG G K+I +F++MM     P ++TFL LLYACSH+GL +EG + F  M   YGI
Sbjct: 348 SAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGI 407

Query: 359 VPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
            P +KHY C+VDLLGR+G LDEA   I  +P+    ++W+TLLS+C +  N  +A+++ +
Sbjct: 408 QPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAK 467

Query: 419 RIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFF 478
           R+ ELD      YV+LSN+ A + RW DV  +RK M+D  V K PG S +E+   + +F 
Sbjct: 468 RVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFC 527

Query: 479 SGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITF 538
           +GD  H    ++ + L+E++ +++  GY PD S+V H DMEDEEKE++L +HSEKLAI F
Sbjct: 528 TGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLH-DMEDEEKEVSLSHHSEKLAIAF 586

Query: 539 GLLNTPPGTTIRVVKNLRVC 558
             L+ P G  IRV+KNLRVC
Sbjct: 587 AFLSLPEGVPIRVMKNLRVC 606



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 127/300 (42%), Gaps = 39/300 (13%)

Query: 117 GLLPDDYS--FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174
           G+L  D +  F  L +AC      AL   +QLH FA   G  ++ +    L+  YA+  D
Sbjct: 37  GVLWSDAARLFSHLFRAC-----RALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGD 91

Query: 175 VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN-------------- 220
           + AAR +FE I    V+S+N +   Y ++     A  LF E+ ERN              
Sbjct: 92  LTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNL 151

Query: 221 -----------------LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
                            + P +  + S    CA L  +  G+ +H Y+ + GLD+ + V 
Sbjct: 152 GFDEESLGLFLDMRREGMHPDEFGLGSVSRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVG 211

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
           ++L  M+ +CG L +  +V   +      + + +I     +G    ++  F  M    V+
Sbjct: 212 SSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVA 271

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
            D +TF+  + +CS    + +G    +    K G+   +    C+V +  R G L ++ R
Sbjct: 272 ADVVTFVSAISSCSDLAALAQG-QQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSER 330


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/521 (37%), Positives = 309/521 (59%), Gaps = 6/521 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           + IHA   K   + D  V   L+   T      S++    +F+     D++ +N +  G+
Sbjct: 451 ESIHACVCKYGFEYDNTVCNALV---TMYMKIGSVQDGCRVFEATTNRDLISWNALLSGF 507

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
             ++T    + +F ++L  G  P+ Y+F S+L++C+ +    ++ GKQ+H   +K  L+ 
Sbjct: 508 HDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSL--SDVDLGKQVHAQIVKNSLDG 565

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           N +V T L+++YA+   +E A  IF  + +  + ++  I+  YA+  +  +A+  F ++Q
Sbjct: 566 NDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQ 625

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              +KP + T+ S+LS C+ + +LD G+ +H    K G    + V +AL+DM+AKCG ++
Sbjct: 626 REGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVE 685

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           DA  VFD +  +DT +W+ +I  Y+ HGQG K++  FE M+     PDE+TF+G+L ACS
Sbjct: 686 DAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACS 745

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H GL++EG  +F S+   YGI P I+HY CMVD+LGRAG+  E   FI+E+ + S  ++W
Sbjct: 746 HMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIW 805

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
            T+L +C  H N+   ++   ++FEL+     +Y++LSN+ A  G W+DV  +R LM  R
Sbjct: 806 ETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTR 865

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           GV K PGCS +EVN  V  F S DG H    ++   L +L ++L  VGY P+T  V H +
Sbjct: 866 GVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLH-N 924

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           + D EK+  L YHSE+LA+ F LL+T    TIR+ KNLR+C
Sbjct: 925 VSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRIC 965



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/414 (26%), Positives = 197/414 (47%), Gaps = 17/414 (4%)

Query: 9   ITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPT 68
            T S   K C N+ N           R  + +H++ I+   + D  +   L++  ++   
Sbjct: 331 FTLSTVLKGCANSGN----------LRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGL 380

Query: 69  TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSL 128
                 A  +F RI +PD+V ++ +     +      A  +F  + +SG++P+ ++  SL
Sbjct: 381 AGD---ALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASL 437

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP 188
           + A   +G   L  G+ +H    K G   +  VC  L+ +Y +   V+   R+FE  +  
Sbjct: 438 VSAATDLGD--LYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNR 495

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
            ++S+NA+++ +  +   +  L +F ++      P   T +S L SC+ L  +DLGK +H
Sbjct: 496 DLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVH 555

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
             I K  LD    V TAL+DM+AK   L+DA ++F+ +  +D  AW+ ++  YA  GQG 
Sbjct: 556 AQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGE 615

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
           K++  F +M +  V P+E T    L  CS    +D G    +SM  K G    +     +
Sbjct: 616 KAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSG-RQLHSMAIKAGQSGDMFVASAL 674

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
           VD+  + G +++A    D L  + T + W T++   S H   G A +  E + +
Sbjct: 675 VDMYAKCGCVEDAEVVFDGLVSRDT-VSWNTIICGYSQHGQGGKALKAFEAMLD 727



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 183/366 (50%), Gaps = 9/366 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K IH   IK+ +  D ++   L+N   +     S  +A  +F  IPE D+V +  +  G+
Sbjct: 148 KAIHGQVIKSGINPDSHLWNSLVNVYAK---CGSANYACKVFGEIPERDVVSWTALITGF 204

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA-CVGAEALEEGKQLHCFAIKLGLN 156
                   A+ LF E+   G+  +++++ + LKAC+ C+    LE GKQ+H  AIK+G  
Sbjct: 205 VAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLD---LEFGKQVHAEAIKVGDF 261

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
           S+L+V + L++LYA+C ++  A R+F  + +   VS+NA++  +A+     + L+LF  +
Sbjct: 262 SDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRM 321

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
               +  +  T+ + L  CA  G+L  G+ +H    + G +    ++  L+DM++KCG  
Sbjct: 322 TGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLA 381

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
            DA+ VF  +   D  +WSA+I      GQ  ++  +F+ M  + V P++ T   L+ A 
Sbjct: 382 GDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAA 441

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           +  G +  G    ++   KYG          +V +  + G + +  R + E       I 
Sbjct: 442 TDLGDLYYG-ESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCR-VFEATTNRDLIS 499

Query: 397 WRTLLS 402
           W  LLS
Sbjct: 500 WNALLS 505



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 161/322 (50%), Gaps = 5/322 (1%)

Query: 24  ALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           AL     C      KQ+HA  IK    +DL V + L++   +      M  A  +F  +P
Sbjct: 235 ALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAK---CGEMVLAERVFLCMP 291

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
           + + V +N +  G+++     + + LF  +  S +    ++  ++LK CA  G   L  G
Sbjct: 292 KQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGN--LRAG 349

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
           + +H  AI++G   + ++   L+++Y++C     A ++F  I +P VVS++AIIT   + 
Sbjct: 350 QIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQK 409

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
            +  EA  +F+ ++   + P   T+ S +S+   LG L  G+ IH  + KYG +    V 
Sbjct: 410 GQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVC 469

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
            AL+ M+ K G + D   VF+  + +D  +W+A++  +  +      + +F +M+    +
Sbjct: 470 NALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFN 529

Query: 324 PDEITFLGLLYACSHTGLVDEG 345
           P+  TF+ +L +CS    VD G
Sbjct: 530 PNMYTFISILRSCSSLSDVDLG 551



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 190/430 (44%), Gaps = 38/430 (8%)

Query: 11  QSPPPKLCTNTPNALSLLPRCT----SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQN 66
           +SPPP         +  LP C     S +  K+   ++        L  L+  ++    N
Sbjct: 11  RSPPPSF-----RGIFFLPSCPIQSPSLKFFKKPQTISRNFQFSIRLKSLSCALDAIESN 65

Query: 67  PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRA----------------IFLF 110
           PT       H  F       + L +   +  S+  +P R                 I+  
Sbjct: 66  PT------GHWAFGDAQNLPVRLQDGFQKTPSKLSSPNRPNSTPGNKIPETVEKKRIWRG 119

Query: 111 VELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA 170
           ++  + G L     +  +L+ CA  G   L EGK +H   IK G+N + ++  +L+N+YA
Sbjct: 120 LDFDSKGRL---RQYSGMLRTCASKGD--LNEGKAIHGQVIKSGINPDSHLWNSLVNVYA 174

Query: 171 ECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLS 230
           +C     A ++F  I E  VVS+ A+IT +      + A++LF E++   ++  + T  +
Sbjct: 175 KCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYAT 234

Query: 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290
           AL +C++   L+ GK +H    K G    + V +AL+D++AKCG +  A  VF  M  ++
Sbjct: 235 ALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQN 294

Query: 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350
             +W+A++  +A  G   K + +F  M  ++++  + T   +L  C+++G +  G    +
Sbjct: 295 AVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAG-QIVH 353

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
           S+  + G         C+VD+  + G   +A +    +      + W  +++        
Sbjct: 354 SLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDV-VSWSAIITCLDQKGQS 412

Query: 411 GLAKQVIERI 420
             A +V +R+
Sbjct: 413 REAAEVFKRM 422


>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 572

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/523 (38%), Positives = 323/523 (61%), Gaps = 5/523 (0%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
            KQ+HA  +K  +  D   ++ L+  C       SM++A  +F +I EP    +NTM RG
Sbjct: 14  FKQVHAHVLKCGIFFDTFCMSNLVATCALTKW-GSMDYACSIFTQIDEPSSFDYNTMIRG 72

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
                    A+ L+V+++  G+ PD +++P +LKAC+ +G   ++EG Q+H    K+GL 
Sbjct: 73  NVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGV--VDEGIQVHGHVFKMGLE 130

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            ++ V  +LIN+Y +C +++ A  +F  + E  V S++AII A+A     NE L L  ++
Sbjct: 131 GDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKM 190

Query: 217 Q-ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
             E   +  + T+++ LS+C  LGS DLGK IH  + +   +  V V T+LIDM+ K G 
Sbjct: 191 SSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMYVKSGC 250

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           L+  + VF NMS K+  +++ MI   A HG+G +++ +F EM++  ++PD++ ++G+  A
Sbjct: 251 LEKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFSA 310

Query: 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
           CSH GLV+EG   F SM+ ++ I P ++HYGCMVDLLGR G L EAY  I  + IK   +
Sbjct: 311 CSHAGLVEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGMLKEAYELIKSMSIKPNDV 370

Query: 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455
           +WR+LLS+C  H+NL + K   E +F L+ ++ GDY++L+N+ A+A +W+DV  +R  + 
Sbjct: 371 IWRSLLSACKVHHNLEIGKIAAENLFMLNQNNSGDYLVLANMYAKAQKWDDVAKIRTKLA 430

Query: 456 DRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHH 515
           +R +++ PG S IE    V +F S D        + + + ++  +LK  GY+PDTS V  
Sbjct: 431 ERNLVQTPGFSLIEAKRKVYKFVSQDKSIPQWNIIYEMIHQMEWQLKFEGYIPDTSQVLL 490

Query: 516 GDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            D++DEEK+  L++HS+KLAI FGL++T  G+ +R+ +NLR+C
Sbjct: 491 -DVDDEEKKERLKFHSQKLAIAFGLIHTSEGSPLRITRNLRMC 532



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 113/212 (53%), Gaps = 9/212 (4%)

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS-----DVEAARRIFENISEPCVVSYN 194
           +EE KQ+H   +K G+  + +    + NL A C+      ++ A  IF  I EP    YN
Sbjct: 11  MEEFKQVHAHVLKCGIFFDTF---CMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYN 67

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
            +I       +  EAL L+ ++ ER ++P   T    L +C+LLG +D G  +H ++ K 
Sbjct: 68  TMIRGNVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKM 127

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
           GL+  V V  +LI+M+ KCG + +A  VF+ M  K   +WSA+I A+A     ++ +++ 
Sbjct: 128 GLEGDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLL 187

Query: 315 EEM-MKAQVSPDEITFLGLLYACSHTGLVDEG 345
            +M  + +   +E T + +L AC+H G  D G
Sbjct: 188 GKMSSEGRCRVEESTLVNVLSACTHLGSPDLG 219


>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
 gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 548

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/522 (37%), Positives = 310/522 (59%), Gaps = 36/522 (6%)

Query: 15  PKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEH 74
           P + T++    SLL  C     L QIH   +   L  D   L++ I+ CT    +S   +
Sbjct: 18  PAIFTSSLQFTSLLSNCRHHLHLYQIHGFMLHRALDQDNLFLSQFIDACTSLGLSS---Y 74

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +F     PD+ L+NT  +  S++ +PI AI+L+  +   GL PD YS PS+LKA   
Sbjct: 75  AFSIFSNKTHPDLRLYNTAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAV-- 132

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS--------------------- 173
           V   A+E G+Q+H   +   L+ ++ V T+LI +Y+ C                      
Sbjct: 133 VKLSAVEVGRQIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWN 192

Query: 174 ----------DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKP 223
                     ++++AR++F  + +  V+S+  +I  YA+++RP+EA+ LFR++Q   ++P
Sbjct: 193 AMVAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEP 252

Query: 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVF 283
            ++ ML+ LS+CA LG+L+LG+WIH YI+K+GL + V +  ALIDM+AK G +  A+ VF
Sbjct: 253 DEIAMLAVLSACADLGALELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVF 312

Query: 284 DNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVD 343
           +NM  K    WS +I A A HG G ++I MF  M KA+V P+E+TF+ +L ACSH G+VD
Sbjct: 313 ENMKQKSVITWSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVD 372

Query: 344 EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
            G  YF  M+  Y I P I+HYGCM+DLL RAG L EA + + ++P ++  ++W +LL++
Sbjct: 373 VGRYYFDQMQSMYKIEPKIEHYGCMIDLLARAGYLQEAQKLLHDMPFEANAMIWGSLLAA 432

Query: 404 CSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVP 463
            ++H +  LA+  ++ + +L+  + G+YV+LSN  A  G+W +   +RKLM++ GV K P
Sbjct: 433 SNTHRDAELAQLALKHLAKLEPGNSGNYVLLSNTYAALGKWNESGTVRKLMRNAGVKKAP 492

Query: 464 GCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVG 505
           G S IE+NN+V EF +GD   S   ++   L +++ +LKM G
Sbjct: 493 GGSVIEINNIVYEFLAGDMSDSQVHEIYHVLCKIILQLKMAG 534


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/572 (35%), Positives = 336/572 (58%), Gaps = 41/572 (7%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINF--CTQNPT----TSSMEHAHLL 78
           L+LL  C+SF  LK IH   ++THL +D+ V ++L+    C  + T    T+ + +A+ +
Sbjct: 16  LALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGI 75

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
           F +I  P++ +FN + R +S    P +A   + ++L S + PD+ +FP L+KA   +  E
Sbjct: 76  FSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEM--E 133

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
            +  G+Q H   ++ G  +++YV  +L+++YA C  + AA RIF  +    VVS+ +++ 
Sbjct: 134 CVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVA 193

Query: 199 AYARSSRPNEALSLFRELQERNL-----------------KPTDV--------------T 227
            Y +     +A  +F E+  RNL                 K  D+               
Sbjct: 194 GYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETV 253

Query: 228 MLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS 287
           M+S +SSCA LG+L+ G+  HEY+ K  +   + + TAL+DM+ +CG ++ A+ VF+ + 
Sbjct: 254 MVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELP 313

Query: 288 GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN 347
            KD+ +WS++I   A HG  HK+I  F +M++   SP +IT   +L ACSH GLVD+G  
Sbjct: 314 DKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLE 373

Query: 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
            + +M+  YGI P ++HYGC+VD+LGRAG+L EA  FI ++P+K    +   LL +C  +
Sbjct: 374 IYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIY 433

Query: 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSS 467
            N  +A++V   + E+   H G YV+LSN+ A AG+WE ++ LR +MK++ V K PG S 
Sbjct: 434 KNTEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSL 493

Query: 468 IEVNNVVREFFSGDGV-HSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
           IE++  + +F  GD   H     +++  +E++ +++++GY  +T      D+++EEKE A
Sbjct: 494 IEIDGKINKFSMGDDQKHPEMGKIKRLWEEILGKIRLIGYKGNTGDAFF-DVDEEEKETA 552

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +  HSEKLAI +G++ T  GTTIR+VKNLRVC
Sbjct: 553 IHMHSEKLAIAYGMMKTKTGTTIRIVKNLRVC 584


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/528 (39%), Positives = 311/528 (58%), Gaps = 44/528 (8%)

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKT----PIRA-IFLFVELLNSGLLPDDYSF 125
           S  H  L F   P  +  L+NT+ R + +++     P  + I +FV +   G+ PD ++F
Sbjct: 9   SSTHPTLHFSH-PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTF 67

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
           P LL++ A      L  G+ +H   ++ GL  + +V T+LI++Y+ C ++  AR++F+ I
Sbjct: 68  PFLLQSFA--SPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEI 125

Query: 186 SEPCVVSYNAIITA-------------------------------YARSSRPNEALSLFR 214
            +P + S+N+II A                               Y R  +  EAL+LFR
Sbjct: 126 PQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFR 185

Query: 215 ELQE---RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271
           E+Q     +++P + TM   L++C  LG+L+ GKW H YI K G+   V + TALIDM+A
Sbjct: 186 EMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYA 245

Query: 272 KCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           KCG ++ A  VF N+   KD  AWSAMI   A HG   + + +F +M+   V P+ +TFL
Sbjct: 246 KCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFL 305

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
            +  AC H GLV EG +Y   M + Y I+P I+HYGCMVDL GRAGR+ EA+  +  +P+
Sbjct: 306 AVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPM 365

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL 450
           +   ++W  LLS    H ++   +  ++++ EL+ ++ G YV+LSN+ A+ GRWEDV ++
Sbjct: 366 EPDVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHV 425

Query: 451 RKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT 510
           R LM+  G+ KVPGCS IEV  V+ EFF GD  H  +  +   L+E+++ LK+ GYV +T
Sbjct: 426 RDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNT 485

Query: 511 SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             V   D+++E KE+AL  HSEKLA+ +G L T PGT IR+VKNLR+C
Sbjct: 486 KEVLL-DLDEEGKELALSLHSEKLALAYGFLKTSPGTPIRIVKNLRIC 532


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/519 (39%), Positives = 317/519 (61%), Gaps = 7/519 (1%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           IH   IK    +D+ V   L+    +      +  A ++FD +    IV + ++  GY++
Sbjct: 176 IHGQIIKYGFGSDVFVQNGLVALYAK---CGHIGVAKVVFDGLYHRTIVSWTSIISGYAQ 232

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
           +   + A+ +F ++ N+G+ PD  +  S+L+A   V  + LE+G+ +H F IK+GL    
Sbjct: 233 NGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDV--DDLEQGRSIHGFVIKMGLEDEP 290

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
            +  +L   YA+C  V  A+  F+ +    V+ +NA+I+ YA++    EA++LF  +  R
Sbjct: 291 ALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISR 350

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
           N+KP  VT+ SA+ + A +GSL+L +W+ +Y+ K      + VNT+LIDM+AKCG ++ A
Sbjct: 351 NIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFA 410

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
             VFD  S KD   WSAMI+ Y  HGQG ++I ++  M +A V P+++TF+GLL AC+H+
Sbjct: 411 RRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHS 470

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRT 399
           GLV EGW  F+ M+D + IVP  +HY C+VDLLGRAG L EA  FI ++PI+    +W  
Sbjct: 471 GLVKEGWELFHCMKD-FEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGA 529

Query: 400 LLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459
           LLS+C  +  + L +    ++F LD  + G YV LSNL A +  W+ V ++R LM+++G+
Sbjct: 530 LLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGL 589

Query: 460 LKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDME 519
            K  G S IE+N  ++ F  GD  H  + ++   L  L + LK VG+VP T  V H D+ 
Sbjct: 590 NKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLERRLKEVGFVPYTESVLH-DLN 648

Query: 520 DEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            EEKE  L +HSE++A+ +GL++T PGTT+R+ KNLR C
Sbjct: 649 YEEKEENLSFHSERIAVAYGLISTAPGTTLRITKNLRAC 687



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 196/385 (50%), Gaps = 13/385 (3%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP 85
           SL+   T  R L QIH   + + LQ++  ++TKL+N    +     + +A  LFD    P
Sbjct: 61  SLIDNSTHKRHLDQIHNRLVISGLQHNGFLMTKLVN---GSSNLGQICYARKLFDEFCYP 117

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
           D+ ++N + R YSR+      + ++  +  +G+ PD ++FP +LKAC     E L+ G  
Sbjct: 118 DVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKAC----TELLDFGLS 173

Query: 146 --LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
             +H   IK G  S+++V   L+ LYA+C  +  A+ +F+ +    +VS+ +II+ YA++
Sbjct: 174 CIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQN 233

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
            +  EAL +F +++   +KP  + ++S L +   +  L+ G+ IH ++ K GL+    + 
Sbjct: 234 GKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALL 293

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
            +L   +AKCG +  A S FD M   +   W+AMI  YA +G   +++ +F  M+   + 
Sbjct: 294 ISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIK 353

Query: 324 PDEITFLGLLYACSHTGLVD-EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
           PD +T    + A +  G ++   W   Y  +  YG    I     ++D+  + G ++ A 
Sbjct: 354 PDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYG--SDIFVNTSLIDMYAKCGSVEFAR 411

Query: 383 RFIDELPIKSTPILWRTLLSSCSSH 407
           R  D    K   ++W  ++     H
Sbjct: 412 RVFDRNSDKDV-VMWSAMIMGYGLH 435


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/538 (38%), Positives = 326/538 (60%), Gaps = 11/538 (2%)

Query: 26  SLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           ++L  C S R +++   +H   IKT     + + T+LI    +      +  A  +FD +
Sbjct: 95  TILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNK---CDCLGDAREMFDEM 151

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           P+ ++V +  M   YS+      A+ LFVE+L S   P+ ++F ++L +C   G+   E 
Sbjct: 152 PQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSC--YGSLGFET 209

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G+Q+H  AIK    S+++V ++L+++YA+   +  A  +F  + E  VV+  AII+ YA+
Sbjct: 210 GRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQ 269

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
                EAL LFR+LQ   +    VT  S L++ + L +L+ GK +H ++ + G   YV +
Sbjct: 270 MGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVL 329

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA-Q 321
             +LIDM++KCG +  A  +FD+M  +   +W+AM+V Y+ HG   + + +F+ M +  +
Sbjct: 330 LNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENK 389

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD-KYGIVPGIKHYGCMVDLLGRAGRLDE 380
           V PD IT+L +L  CSH  L D G   FY+M + K GI P I HYGC+VDLLGRAGR++E
Sbjct: 390 VKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEE 449

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           A+ FI ++P   T  +W +LL SC  H+++ +   V +++ EL+  + G+YVILSNL A 
Sbjct: 450 AFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYAS 509

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
           AG+WED+  +R LM+++ V K PG S +E++ +V  F + D  H    ++ K + EL  +
Sbjct: 510 AGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVAKKVKELSIK 569

Query: 501 LKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            K  GYVPD S V + D+++E+KE  L  HSEKLA+ FGL+ TP GTTIRV+KNLR+C
Sbjct: 570 FKEDGYVPDLSCVLY-DVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRIC 626


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/481 (40%), Positives = 301/481 (62%), Gaps = 10/481 (2%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           +F+ +PE D+V +NT+  G +R+      + +  E+  + L PD ++  S+L   A    
Sbjct: 195 IFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIA--EN 252

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
             +  GK++H  +I+ GL++++YV ++LI++YA+C+ V  + R+F  ++E   +S+N+II
Sbjct: 253 VDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSII 312

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
               ++   +E L  FR++    +KP   +  S + +CA L +L LGK +H YI + G D
Sbjct: 313 AGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFD 372

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
           + + + ++L+DM+AKCG +  A  +FD M  +D  +W+AMI+  A HGQ   +I +FE+M
Sbjct: 373 ENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQM 432

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
               +         +L ACSH GLVDE W YF SM   +GI PG++HY  + DLLGRAGR
Sbjct: 433 ETEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGR 485

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437
           L+EAY FI  + I  T  +W TLLS+C  H N+ +A++V  RI E+D ++ G Y++L+N+
Sbjct: 486 LEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVDPNNTGAYILLANI 545

Query: 438 CARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDEL 497
            + A RW++    R  M+  G+ K P CS IEV N V  F +GD  H     +++A++ L
Sbjct: 546 YSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVL 605

Query: 498 VKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRV 557
           V+ ++  GYVPDTS VHH D+E+E+K+  +  HSE+LAI FG++NTP G TIRV KNLRV
Sbjct: 606 VELMEKEGYVPDTSEVHH-DVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLRV 664

Query: 558 C 558
           C
Sbjct: 665 C 665



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 115/420 (27%), Positives = 201/420 (47%), Gaps = 45/420 (10%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           LF+ I  P  + + ++ R Y+    P +++  F+ +L SGL PD   FPS+LK+CA +  
Sbjct: 62  LFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALL-- 119

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVE--------------------- 176
             L  G+ LH + I++GL+ +LY    L+N+Y++   +E                     
Sbjct: 120 MDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTR 179

Query: 177 -----------AARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTD 225
                      + R+IFE + E  +VS+N II   AR+    E L + RE+   NLKP  
Sbjct: 180 SVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDS 239

Query: 226 VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285
            T+ S L   A    +  GK IH    + GLD  + V ++LIDM+AKC R+ D+  VF  
Sbjct: 240 FTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTL 299

Query: 286 MSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
           ++ +D  +W+++I     +G   + +  F +M+ A++ P   +F  ++ AC+H   +  G
Sbjct: 300 LTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLG 359

Query: 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS 405
               +    + G    I     +VD+  + G +  A +  D + ++   + W  ++  C+
Sbjct: 360 -KQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDM-VSWTAMIMGCA 417

Query: 406 SHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV-DYLRKLMKDRGVLKVPG 464
            H   G A   IE +FE  ++ G   V+ +  C+  G  ++   Y   + +D G+   PG
Sbjct: 418 LH---GQAPDAIE-LFEQMETEGIKAVLTA--CSHGGLVDEAWKYFNSMTRDFGI--APG 469



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 130/295 (44%), Gaps = 35/295 (11%)

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           + +QLH   +K   +S   + + L+++Y+  + +  + R+F  I  P  +++ ++I  Y 
Sbjct: 24  QAQQLHAQVLKFQASSLCNL-SLLLSIYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYT 82

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
               P+++L  F  +    L P      S L SCALL  L+LG+ +H YI + GLD  + 
Sbjct: 83  SHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLY 142

Query: 262 VNTALIDMHAKCGRLDD-------AVSVFDNMS-------------------------GK 289
              AL++M++K   L++       A  VFD M+                          K
Sbjct: 143 TGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEK 202

Query: 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYF 349
           D  +W+ +I   A +G   +++ M  EM  A + PD  T   +L   +    +  G    
Sbjct: 203 DLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRG-KEI 261

Query: 350 YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSC 404
           +    + G+   I     ++D+  +  R+ ++ R +  L  +   I W ++++ C
Sbjct: 262 HGCSIRQGLDADIYVASSLIDMYAKCTRVADSCR-VFTLLTERDGISWNSIIAGC 315


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/560 (36%), Positives = 311/560 (55%), Gaps = 31/560 (5%)

Query: 27  LLPRCTSFRGLKQIHAVTIKT----------HLQ---NDLNVLTKLINFCTQNPTTSSME 73
           L   C + R L+Q+HA    +          HL     DL  LT       + P  + M 
Sbjct: 112 LFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMS 171

Query: 74  ---------------HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118
                           A  LFD +PE ++  +N M  G +       ++  F+++   G+
Sbjct: 172 WNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGM 231

Query: 119 LPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAA 178
            PD++   S+ + CA  G   +  G+Q+H + ++ GL+ ++ V ++L ++Y  C  ++  
Sbjct: 232 HPDEFGLGSVFRCCA--GLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEG 289

Query: 179 RRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL 238
             +   +    +VS N II    ++     AL  F  ++   +    VT +SA+SSC+ L
Sbjct: 290 EAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDL 349

Query: 239 GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMI 298
            +L  G+ IH  + K G+DK V V T L+ M+++CG L D+  VF    G DT   SAMI
Sbjct: 350 AALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMI 409

Query: 299 VAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGI 358
            AY  HG G K+I +F++MM     P ++TFL LLYACSH+GL +EG + F  M   YG+
Sbjct: 410 SAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGM 469

Query: 359 VPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
            P +KHY C+VDLLGR+G LDEA   I  +P+    ++W+TLLS+C +  N  +A+++ +
Sbjct: 470 QPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAK 529

Query: 419 RIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFF 478
           R+ ELD      YV+LSN+ A + RW DV  +RK M+D  V K PG S +E+   + +F 
Sbjct: 530 RVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFC 589

Query: 479 SGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITF 538
           +GD  H    ++ + L+E++ +++  GY PD S+V H DMEDEEKE++L +HSEKLAI F
Sbjct: 590 TGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLH-DMEDEEKEVSLSHHSEKLAIAF 648

Query: 539 GLLNTPPGTTIRVVKNLRVC 558
             L+ P G  IRV+KNLRVC
Sbjct: 649 AFLSLPEGVPIRVMKNLRVC 668



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 127/300 (42%), Gaps = 39/300 (13%)

Query: 117 GLLPDDYS--FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174
           G+L  D +  F  L +AC      AL   +QLH FA   G  ++ +    L+  YA+  D
Sbjct: 99  GVLWSDAARLFSHLFRAC-----RALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGD 153

Query: 175 VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN-------------- 220
           + AAR +FE I    V+S+N +   Y ++     A  LF E+ ERN              
Sbjct: 154 LTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNL 213

Query: 221 -----------------LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
                            + P +  + S    CA L  +  G+ +H Y+ + GLD+ + V 
Sbjct: 214 GFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVG 273

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
           ++L  M+ +CG L +  +V   +      + + +I     +G    ++  F  M    V+
Sbjct: 274 SSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVA 333

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
            D +TF+  + +CS    + +G    +    K G+   +    C+V +  R G L ++ R
Sbjct: 334 ADVVTFVSAISSCSDLAALAQG-QQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSER 392


>gi|28876027|gb|AAO60036.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 704

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/560 (36%), Positives = 311/560 (55%), Gaps = 31/560 (5%)

Query: 27  LLPRCTSFRGLKQIHAVTIKT----------HLQ---NDLNVLTKLINFCTQNPTTSSME 73
           L   C + R L+Q+HA    +          HL     DL  LT       + P  + M 
Sbjct: 116 LFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMS 175

Query: 74  ---------------HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118
                           A  LFD +PE ++  +N M  G +       ++  F+++   G+
Sbjct: 176 WNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGM 235

Query: 119 LPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAA 178
            PD++   S+ + CA  G   +  G+Q+H + ++ GL+ ++ V ++L ++Y  C  ++  
Sbjct: 236 HPDEFGLGSVFRCCA--GLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEG 293

Query: 179 RRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL 238
             +   +    +VS N II    ++     AL  F  ++   +    VT +SA+SSC+ L
Sbjct: 294 EAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDL 353

Query: 239 GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMI 298
            +L  G+ IH  + K G+DK V V T L+ M+++CG L D+  VF    G DT   SAMI
Sbjct: 354 AALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMI 413

Query: 299 VAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGI 358
            AY  HG G K+I +F++MM     P ++TFL LLYACSH+GL +EG + F  M   YG+
Sbjct: 414 SAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGM 473

Query: 359 VPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
            P +KHY C+VDLLGR+G LDEA   I  +P+    ++W+TLLS+C +  N  +A+++ +
Sbjct: 474 QPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAK 533

Query: 419 RIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFF 478
           R+ ELD      YV+LSN+ A + RW DV  +RK M+D  V K PG S +E+   + +F 
Sbjct: 534 RVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFC 593

Query: 479 SGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITF 538
           +GD  H    ++ + L+E++ +++  GY PD S+V H DMEDEEKE++L +HSEKLAI F
Sbjct: 594 TGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLH-DMEDEEKEVSLSHHSEKLAIAF 652

Query: 539 GLLNTPPGTTIRVVKNLRVC 558
             L+ P G  IRV+KNLRVC
Sbjct: 653 AFLSLPEGVPIRVMKNLRVC 672



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 127/300 (42%), Gaps = 39/300 (13%)

Query: 117 GLLPDDYS--FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174
           G+L  D +  F  L +AC      AL   +QLH FA   G  ++ +    L+  YA+  D
Sbjct: 103 GVLWSDAARLFSHLFRAC-----RALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGD 157

Query: 175 VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN-------------- 220
           + AAR +FE I    V+S+N +   Y ++     A  LF E+ ERN              
Sbjct: 158 LTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNL 217

Query: 221 -----------------LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
                            + P +  + S    CA L  +  G+ +H Y+ + GLD+ + V 
Sbjct: 218 GFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVG 277

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
           ++L  M+ +CG L +  +V   +      + + +I     +G    ++  F  M    V+
Sbjct: 278 SSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVA 337

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
            D +TF+  + +CS    + +G    +    K G+   +    C+V +  R G L ++ R
Sbjct: 338 ADVVTFVSAISSCSDLAALAQG-QQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSER 396


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/546 (37%), Positives = 319/546 (58%), Gaps = 14/546 (2%)

Query: 18  CT--NTPNALSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSM 72
           CT  +T   L +LP     + L+   QIH++  KT   +   VLT  I+  ++      +
Sbjct: 216 CTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSK---CGKI 272

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
           +    LF    +PDIV +N M  GY+ +     ++ LF EL+ SG      +  SL+   
Sbjct: 273 KMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVS 332

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
                  L     +H + +K    S+  V T L  +Y++ +++E+AR++F+   E  + S
Sbjct: 333 G-----HLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPS 387

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +NA+I+ Y ++    +A+SLFRE+Q+    P  VT+   LS+CA LG+L LGKW+H+ ++
Sbjct: 388 WNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVR 447

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
               +  + V+TALI M+AKCG + +A  +FD M+ K+   W+ MI  Y  HGQG +++ 
Sbjct: 448 STDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALN 507

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           +F EM+ + ++P  +TFL +LYACSH GLV EG   F SM  +YG  P +KHY CMVD+L
Sbjct: 508 IFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDIL 567

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432
           GRAG L  A +FI+ + I+    +W TLL +C  H +  LA+ V E++FELD  + G +V
Sbjct: 568 GRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHV 627

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
           +LSN+ +    +     +R+  K R + K PG + IE+      F SGD  H    ++ +
Sbjct: 628 LLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYE 687

Query: 493 ALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVV 552
            L++L  +++  GY P+T L  H D+E+EE+E+ ++ HSE+LAI FGL+ T PGT IR++
Sbjct: 688 KLEKLEGKMREAGYQPETELALH-DVEEEERELMVKVHSERLAIAFGLIATEPGTEIRII 746

Query: 553 KNLRVC 558
           KNLRVC
Sbjct: 747 KNLRVC 752



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 196/425 (46%), Gaps = 17/425 (4%)

Query: 4   TPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFC 63
           T S    ++    +  NT   L    R TS   L Q HA  I    +ND+++LTKL    
Sbjct: 5   TVSSATAETTAALISKNT--YLDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRL 62

Query: 64  TQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS-GLLPDD 122
           +      ++ +A  +F  +  PD+ LFN + RG+S +++P  ++ +F  L  S  L P+ 
Sbjct: 63  SD---LGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNS 119

Query: 123 YSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF 182
            ++   + A +  G      G+ +H  A+  G +S L + + ++ +Y +   VE AR++F
Sbjct: 120 STYAFAISAAS--GFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVF 177

Query: 183 ENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTD-VTMLSALSSCALLGSL 241
           + + E   + +N +I+ Y ++    E++ +FR+L   +    D  T+L  L + A L  L
Sbjct: 178 DRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQEL 237

Query: 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
            LG  IH    K G   +  V T  I +++KCG++    ++F      D  A++AMI  Y
Sbjct: 238 RLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGY 297

Query: 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG 361
            ++G+   S+ +F+E+M +       T + L+    H  L+     Y      K   +  
Sbjct: 298 TSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCL----KSNFLSH 353

Query: 362 IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421
                 +  +  +   ++ A +  DE P KS P  W  ++S  + +   GL +  I    
Sbjct: 354 ASVSTALTTVYSKLNEIESARKLFDESPEKSLPS-WNAMISGYTQN---GLTEDAISLFR 409

Query: 422 ELDDS 426
           E+  S
Sbjct: 410 EMQKS 414


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/540 (37%), Positives = 325/540 (60%), Gaps = 13/540 (2%)

Query: 26  SLLPRCTSF--RGLK-QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+LP C     R L   +H   +K  L ++L V   +I+   +      +E    +FD +
Sbjct: 175 SVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGK---LGMLEEVRKVFDGM 231

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
              D+V +N++  G+ +      A+ +F  + +SG+ PD  +  SL  A A  G   +  
Sbjct: 232 SSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGD--ICG 289

Query: 143 GKQLHCFAIKLGLN-SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           G+ +HC+ ++ G +  ++     ++++YA+ S +EAA+R+F+++     VS+N +IT Y 
Sbjct: 290 GRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYM 349

Query: 202 RSSRPNEALSLFRELQE-RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
           ++   +EA+ ++  +Q+   LKP   T +S L + + LG+L  G  +H    K GL+  V
Sbjct: 350 QNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDV 409

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            V T +ID++AKCG+LD+A+ +F+    + T  W+A+I     HG G K++ +F +M + 
Sbjct: 410 YVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQE 469

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
            +SPD +TF+ LL ACSH GLVD+G N+F  M+  YGI P  KHY CMVD+ GRAG+LD+
Sbjct: 470 GISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDD 529

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           A+ FI  +PIK    +W  LL +C  H N+ + K   + +FELD  + G YV++SN+ A+
Sbjct: 530 AFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAK 589

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGD--GVHSYSTDLQKALDELV 498
            G+W+ VD +R L++ + + K PG SSIEV   V  F+SG+   +H    ++Q+ L +L+
Sbjct: 590 VGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRELLDLL 649

Query: 499 KELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +++ +GYVPD S V   D+E++EKE  L  HSE+LAI FG++NTPP T + + KNLRVC
Sbjct: 650 AKIRSLGYVPDYSFVLQ-DVEEDEKEQILNNHSERLAIAFGIINTPPRTPLHIYKNLRVC 708



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 182/337 (54%), Gaps = 6/337 (1%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A+  FD +   D+  +N M  G  R+     A+ LF  ++  G+  D  +  S+L  C  
Sbjct: 123 AYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVL 182

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           +G  AL     +H +A+K GL+  L+VC  +I++Y +   +E  R++F+ +S   +V++N
Sbjct: 183 LGDRAL--ALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWN 240

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           +II+ + +  +   A+ +F  +++  + P  +T+LS  S+ A  G +  G+ +H Y+ + 
Sbjct: 241 SIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRR 300

Query: 255 GLD-KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
           G D   +    A++DM+AK  +++ A  +FD+M  +D  +W+ +I  Y  +G   ++I +
Sbjct: 301 GWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHV 360

Query: 314 FEEMMKAQ-VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           ++ M K + + P + TF+ +L A SH G + +G    +++  K G+   +    C++DL 
Sbjct: 361 YDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQG-TRMHALSIKTGLNLDVYVGTCVIDLY 419

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
            + G+LDEA    ++ P +ST   W  ++S    H +
Sbjct: 420 AKCGKLDEAMLLFEQTPRRSTGP-WNAVISGVGVHGH 455



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 153/310 (49%), Gaps = 11/310 (3%)

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL-NSNLYVCTTLINLYAECSDVEAAR 179
           D ++FP LL+A    G  A     QLH  A++LGL   + +    L++ Y     V  A 
Sbjct: 70  DAFTFPPLLRAAQGPGTAA-----QLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAY 124

Query: 180 RIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG 239
           R F+ +    V ++NA+++   R++R  EA+ LF  +    +    VT+ S L  C LLG
Sbjct: 125 RAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLG 184

Query: 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIV 299
              L   +H Y  K+GLD  + V  A+ID++ K G L++   VFD MS +D   W+++I 
Sbjct: 185 DRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIIS 244

Query: 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359
            +   GQ   ++ MF  M  + VSPD +T L L  A +  G +  G +    M  +   V
Sbjct: 245 GHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDV 304

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIER 419
             I     +VD+  +  +++ A R  D +P++   + W TL++    +   GLA + I  
Sbjct: 305 GDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDA-VSWNTLITGYMQN---GLASEAIH- 359

Query: 420 IFELDDSHGG 429
           +++    H G
Sbjct: 360 VYDHMQKHEG 369


>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Glycine max]
          Length = 579

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/524 (38%), Positives = 309/524 (58%), Gaps = 5/524 (0%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           L QIHA  I+T L     V  + ++    +       ++   F ++  P +  +NTM R 
Sbjct: 19  LLQIHAHIIRTTLIQYPTVSLQFLSRIALSGPLQDASYSQRFFGQLSHPLVSHYNTMIRA 78

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
            S S +P + + L+ ++   G+  D  S    +K+C  +    L  G Q+HC   K G  
Sbjct: 79  CSMSDSPQKGLLLYRDMRRRGIAADPLSSSFAVKSC--IRFLYLPGGVQVHCNIFKDGHQ 136

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            +  + T +++LY+ C     A ++F+ +     V++N +I+   R++R  +ALSLF  +
Sbjct: 137 WDTLLLTAVMDLYSLCQRGGDACKVFDEMPHRDTVAWNVMISCCIRNNRTRDALSLFDVM 196

Query: 217 QERNLK--PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
           Q  + K  P DVT L  L +CA L +L+ G+ IH YI + G    + +  +LI M+++CG
Sbjct: 197 QGSSYKCEPDDVTCLLLLQACAHLNALEFGERIHGYIMERGYRDALNLCNSLISMYSRCG 256

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
            LD A  VF  M  K+  +WSAMI   A +G G ++I  FEEM++  V PD+ TF G+L 
Sbjct: 257 CLDKAYEVFKGMGNKNVVSWSAMISGLAMNGYGREAIEAFEEMLRIGVLPDDQTFTGVLS 316

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           ACS++G+VDEG ++F+ M  ++G+ P + HYGCMVDLLGRAG LD+AY+ I  + +K   
Sbjct: 317 ACSYSGMVDEGMSFFHRMSREFGVTPNVHHYGCMVDLLGRAGLLDKAYQLIMSMVVKPDS 376

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454
            +WRTLL +C  H ++ L ++VI  + EL     GDYV+L N+ + AG WE V  +RKLM
Sbjct: 377 TMWRTLLGACRIHGHVTLGERVIGHLIELKAQEAGDYVLLLNIYSSAGHWEKVAEVRKLM 436

Query: 455 KDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVH 514
           K++ +   PGCS+IE+   V EF   D  HS + ++ + LDE+  +L++ GYV + S   
Sbjct: 437 KNKSIQTTPGCSTIELKGAVHEFVVDDVSHSRNREIYETLDEINHQLRIAGYVVELSSEL 496

Query: 515 HGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           H  M+D+EK   L +HSEKLA+ FG+L TPPGT +RV  NLRVC
Sbjct: 497 H-KMDDKEKGYVLSHHSEKLAVAFGVLATPPGTILRVASNLRVC 539


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/542 (37%), Positives = 313/542 (57%), Gaps = 9/542 (1%)

Query: 20  NTPNALSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N     SLL   T+   L+    IHA   K   + D+ V   L+    +N     +    
Sbjct: 414 NQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKN---GCVHDGT 470

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            L++ + + D++ +N    G        R + +F  +L  G +P+ Y+F S+L +C+C+ 
Sbjct: 471 KLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLF 530

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
              +  G+Q+H   IK  L+ N +VCT LI++YA+C  +E A   F  +S   + ++  I
Sbjct: 531 D--VHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVI 588

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           IT YA++++  +AL+ FR++Q+  +KP + T+   LS C+ L SL+ G+ +H  + K G 
Sbjct: 589 ITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGH 648

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
              + V +AL+DM+AKCG +++A ++F+ +  +DT AW+ +I  YA +GQG+K++  F  
Sbjct: 649 VSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRM 708

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M+   +SPD +TF G+L ACSH GLV+EG  +F SM   +GI P + H  CMVD+LGR G
Sbjct: 709 MLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVG 768

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSN 436
           + DE   FI ++ +    ++W T+L +   HNNL L ++   ++FEL       Y++LSN
Sbjct: 769 KFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSN 828

Query: 437 LCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDE 496
           + A  GRW+DV  +R LM  +GV K PGCS +E N  V  F S D  H    ++   LDE
Sbjct: 829 IFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDE 888

Query: 497 LVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLR 556
           L +EL  + YVP T  V H   E E+KE  LR+HSE+LA+ F L++T     IR+ KNLR
Sbjct: 889 LDRELASIQYVPKTEYVLHNVGETEKKE-NLRFHSERLALGFALISTSSEKKIRIFKNLR 947

Query: 557 VC 558
           +C
Sbjct: 948 IC 949



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 111/381 (29%), Positives = 196/381 (51%), Gaps = 12/381 (3%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  C S R L   K IH + +K  +  D ++   L+N   +   ++   +A L+  ++
Sbjct: 117 SMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSA---YARLVLAKM 173

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA-CVGAEALE 141
           P+ D+V +  + +G         +I+LF E+ N G++P++++  + LKAC+ C+   AL+
Sbjct: 174 PDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCM---ALD 230

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            GKQ+H  A KLGL  +L+V + L++LYA+C ++E A ++F  + E   V++N ++  YA
Sbjct: 231 LGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYA 290

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           +       L LF  + E ++K  + T+ + L  CA   +L  G+ IH  I K G +    
Sbjct: 291 QRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEF 350

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           +   L+DM++KCG   DA+ VF  +   D   WSA+I      GQ  +SI +F  M    
Sbjct: 351 IGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGD 410

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
             P++ T   LL A ++TG +  G +  ++   KYG    +     +V +  + G + + 
Sbjct: 411 TLPNQYTICSLLSAATNTGNLQYGQS-IHACVWKYGFETDVAVSNALVTMYMKNGCVHDG 469

Query: 382 YRFIDELPIKSTPILWRTLLS 402
            +  + + +    I W   LS
Sbjct: 470 TKLYESM-VDRDLISWNAYLS 489



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 165/322 (51%), Gaps = 11/322 (3%)

Query: 22  PNALSL---LPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PN  +L   L  C+    L   KQ+HA   K  L  DL V + L++   +      +E A
Sbjct: 211 PNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAK---CGEIELA 267

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
             +F  +PE + V +N +  GY++       + LF  ++   +  ++++  ++LK CA  
Sbjct: 268 SKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCA-- 325

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
            ++ L++G+ +H   IK G   N ++   L+++Y++C     A  +F+ I +P +V ++A
Sbjct: 326 NSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSA 385

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +IT   +  +  E++ LF  ++  +  P   T+ S LS+    G+L  G+ IH  + KYG
Sbjct: 386 LITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYG 445

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
            +  V V+ AL+ M+ K G + D   ++++M  +D  +W+A +      G   + + +F 
Sbjct: 446 FETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFY 505

Query: 316 EMMKAQVSPDEITFLGLLYACS 337
            M++    P+  TF+ +L +CS
Sbjct: 506 HMLEEGFIPNMYTFISILGSCS 527


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/542 (37%), Positives = 313/542 (57%), Gaps = 9/542 (1%)

Query: 20  NTPNALSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N     SLL   T+   L+    IHA   K   + D+ V   L+    +N     +    
Sbjct: 414 NQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKN---GCVHDGT 470

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            L++ + + D++ +N    G        R + +F  +L  G +P+ Y+F S+L +C+C+ 
Sbjct: 471 KLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLF 530

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
              +  G+Q+H   IK  L+ N +VCT LI++YA+C  +E A   F  +S   + ++  I
Sbjct: 531 D--VHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVI 588

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           IT YA++++  +AL+ FR++Q+  +KP + T+   LS C+ L SL+ G+ +H  + K G 
Sbjct: 589 ITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGH 648

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
              + V +AL+DM+AKCG +++A ++F+ +  +DT AW+ +I  YA +GQG+K++  F  
Sbjct: 649 VSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRM 708

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M+   +SPD +TF G+L ACSH GLV+EG  +F SM   +GI P + H  CMVD+LGR G
Sbjct: 709 MLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVG 768

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSN 436
           + DE   FI ++ +    ++W T+L +   HNNL L ++   ++FEL       Y++LSN
Sbjct: 769 KFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSN 828

Query: 437 LCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDE 496
           + A  GRW+DV  +R LM  +GV K PGCS +E N  V  F S D  H    ++   LDE
Sbjct: 829 IFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDE 888

Query: 497 LVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLR 556
           L +EL  + YVP T  V H   E E+KE  LR+HSE+LA+ F L++T     IR+ KNLR
Sbjct: 889 LDRELASIQYVPKTEYVLHNVGETEKKE-NLRFHSERLALGFALISTSSEKKIRIFKNLR 947

Query: 557 VC 558
           +C
Sbjct: 948 IC 949



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 111/381 (29%), Positives = 196/381 (51%), Gaps = 12/381 (3%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  C S R L   K IH + +K  +  D ++   L+N   +   ++   +A L+  ++
Sbjct: 117 SMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSA---YARLVLAKM 173

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA-CVGAEALE 141
           P+ D+V +  + +G         +I+LF E+ N G++P++++  + LKAC+ C+   AL+
Sbjct: 174 PDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCM---ALD 230

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            GKQ+H  A KLGL  +L+V + L++LYA+C ++E A ++F  + E   V++N ++  YA
Sbjct: 231 LGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYA 290

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           +       L LF  + E ++K  + T+ + L  CA   +L  G+ IH  I K G +    
Sbjct: 291 QRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEF 350

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           +   L+DM++KCG   DA+ VF  +   D   WSA+I      GQ  +SI +F  M    
Sbjct: 351 IGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGD 410

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
             P++ T   LL A ++TG +  G +  ++   KYG    +     +V +  + G + + 
Sbjct: 411 TLPNQYTICSLLSAATNTGNLQYGQS-IHACVWKYGFETDVAVSNALVTMYMKNGCVHDG 469

Query: 382 YRFIDELPIKSTPILWRTLLS 402
            +  + + +    I W   LS
Sbjct: 470 TKLYESM-VDRDLISWNAYLS 489



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 165/322 (51%), Gaps = 11/322 (3%)

Query: 22  PNALSL---LPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PN  +L   L  C+    L   KQ+HA   K  L  DL V + L++   +      +E A
Sbjct: 211 PNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAK---CGEIELA 267

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
             +F  +PE + V +N +  GY++       + LF  ++   +  ++++  ++LK CA  
Sbjct: 268 SKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCA-- 325

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
            ++ L++G+ +H   IK G   N ++   L+++Y++C     A  +F+ I +P +V ++A
Sbjct: 326 NSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSA 385

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +IT   +  +  E++ LF  ++  +  P   T+ S LS+    G+L  G+ IH  + KYG
Sbjct: 386 LITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYG 445

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
            +  V V+ AL+ M+ K G + D   ++++M  +D  +W+A +      G   + + +F 
Sbjct: 446 FETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFY 505

Query: 316 EMMKAQVSPDEITFLGLLYACS 337
            M++    P+  TF+ +L +CS
Sbjct: 506 HMLEEGFIPNMYTFISILGSCS 527


>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 218/568 (38%), Positives = 338/568 (59%), Gaps = 24/568 (4%)

Query: 7   PPITQSPPPKLC-----TNTPNALSLLPRCTSFRGLKQIHAVTIK---THLQNDLNVLTK 58
           P  +QS P ++      T+    L LL  CT    LKQIHA  I+   TH  + L + ++
Sbjct: 6   PTNSQSLPIEIKGENSKTHQSRFLHLLTDCTDLSKLKQIHAQAIRNFSTH-NSSLFLYSR 64

Query: 59  LINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRS-KTPIRAIFLFVELLNSG 117
           +++      +    ++A  +F++I  P+  ++NT+    +RS     +AI +F  +L  G
Sbjct: 65  ILHV----SSLIDFDYACRVFNQIDNPNSFMWNTLIGACARSLDRKEQAIEIFYRMLEEG 120

Query: 118 LL-PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVE 176
            + PD ++FP LLKACA V A  L EG+Q H    KLGL+ ++YV  +LI+LYA C  + 
Sbjct: 121 SVEPDKHTFPFLLKACAYVFA--LSEGRQAHAQIFKLGLDLDVYVGNSLIHLYASCGCLS 178

Query: 177 AARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236
            A ++FE +    +VS+N +I AY +S     AL LF E+Q  + +P   TM S +S+CA
Sbjct: 179 MALKVFEKMPLRSLVSWNVMIDAYVQSGLFENALKLFVEMQN-SFEPDGYTMQSIVSACA 237

Query: 237 LLGSLDLGKWIHEYIKKYG---LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
            +G+L LG W H Y+ +     +   V +N++L+DM++KCG L  A  VF+ M   D  +
Sbjct: 238 GIGALSLGMWAHAYVLRKASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNS 297

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
           W++MI+A A HG+G  ++  F  +++ +   P+ +TF+G+L AC+H G+V +G  YF  M
Sbjct: 298 WNSMILALAMHGRGQAALQCFSRLVEMEKFLPNSVTFVGVLSACNHGGMVADGRKYFDMM 357

Query: 353 RDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN-NLG 411
            + Y I P ++HYGC+VDLL R+G +DEA   +  + IK   ++WR+LL +C   N  + 
Sbjct: 358 VNDYKIEPRLEHYGCLVDLLSRSGFIDEALELVANMHIKPDAVIWRSLLDACYKQNAGVE 417

Query: 412 LAKQVIERIFELDDS-HGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEV 470
           L+++V  +I + + +   G YV+LS + A A +W DV  +RK+M D GV K PGCSSIE+
Sbjct: 418 LSEEVAFKILQSEKTISSGVYVMLSRVYASARQWNDVGIIRKVMTDMGVTKEPGCSSIEI 477

Query: 471 NNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYH 530
           + +  EFF+GD  H    ++   +D + ++L+  GY PD S     D  D  K+ +L+ H
Sbjct: 478 DGISHEFFAGDTSHPRIKEIYGVIDLIEEKLERRGYSPDCSQATMVDEPDNIKQQSLKLH 537

Query: 531 SEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           SE+LAI FGLLN  PGT +R+ KNLRVC
Sbjct: 538 SERLAIAFGLLNLKPGTPVRIFKNLRVC 565


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/533 (39%), Positives = 315/533 (59%), Gaps = 8/533 (1%)

Query: 27  LLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPD 86
           ++  C      K+IH + +K   + D+ V   L++  ++         A  LFD +P  D
Sbjct: 3   VVKACGDLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGD---ARKLFDDMPARD 59

Query: 87  IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQL 146
              +N M  GY ++     A+ +  E+   G+  D  +  S+L  CA VG   +  GK +
Sbjct: 60  RGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGD--ILSGKLI 117

Query: 147 HCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRP 206
           H + IK GL   L+V   LIN+YA+   +  A+++F  + +  VVS+N +IT YA++   
Sbjct: 118 HLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLIKD-VVSWNTLITGYAQNGLA 176

Query: 207 NEALSLFRELQE-RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTA 265
           +EA+ ++  ++E   + P   T +S L + + +G+L  G  IH  + K  L   V V T 
Sbjct: 177 SEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTC 236

Query: 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
           LIDM+ KCG+LDDA+S+F  +  K++  W+AMI  Y  HG G K++ +F EM   +V PD
Sbjct: 237 LIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPD 296

Query: 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI 385
            ITF+ LL ACSH+GLV +    F  M ++YGI P +KHYGCMVDL GRAG L+ A+ FI
Sbjct: 297 HITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFI 356

Query: 386 DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWE 445
            ++PI+     W  LL++C  H N+ L K   ER+FE+D  + G YV+LSN+ A  G+WE
Sbjct: 357 KKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWE 416

Query: 446 DVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVG 505
            VD +R L +DRG+ K PG SSI +NN V  F++G+  H    ++ + L +L  ++K +G
Sbjct: 417 GVDDVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIKTIG 476

Query: 506 YVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           YVPD   V   D+E++EKE  L  HSE+LAI +G+++T P T IR+ KNLRVC
Sbjct: 477 YVPDFCFVLQ-DVEEDEKEHILMGHSERLAIAYGIISTSPKTPIRIFKNLRVC 528



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 186/351 (52%), Gaps = 24/351 (6%)

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
           P ++KAC       L +GK++HC  +KLG   +++V  +L+++Y+    V  AR++F+++
Sbjct: 1   PPVVKACG-----DLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDM 55

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245
                 S+NA+I+ Y ++    EAL +  E++   +K   +T+ S L  CA +G +  GK
Sbjct: 56  PARDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGK 115

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
            IH Y+ K+GL+  + V+ ALI+M+AK G L  A  VF  +  KD  +W+ +I  YA +G
Sbjct: 116 LIHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVF-GLLIKDVVSWNTLITGYAQNG 174

Query: 306 QGHKSI---LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI 362
              ++I   L+ EE    ++ P++ T++ +L A SH G + +G    +    K  +   +
Sbjct: 175 LASEAIEVYLLMEE--HEEIIPNQGTWVSILPAYSHVGALQQGMR-IHGQVIKNCLYSDV 231

Query: 363 KHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
               C++D+ G+ G+LD+A     ++P K++ + W  ++S    H   G  ++ +E   E
Sbjct: 232 FVGTCLIDMYGKCGKLDDAISLFYQVPRKNS-VPWNAMISCYGVH---GDGEKALELFRE 287

Query: 423 LDDSHGG----DYVILSNLCARAGRWEDVDYLRKLMKDR-GV---LKVPGC 465
           +           +V L + C+ +G   D  +   +M++  G+   LK  GC
Sbjct: 288 MKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGC 338


>gi|222626043|gb|EEE60175.1| hypothetical protein OsJ_13106 [Oryza sativa Japonica Group]
          Length = 628

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/560 (36%), Positives = 311/560 (55%), Gaps = 31/560 (5%)

Query: 27  LLPRCTSFRGLKQIHAVTIKT----------HLQ---NDLNVLTKLINFCTQNPTTSSME 73
           L   C + R L+Q+HA    +          HL     DL  LT       + P  + M 
Sbjct: 50  LFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMS 109

Query: 74  ---------------HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118
                           A  LFD +PE ++  +N M  G +       ++  F+++   G+
Sbjct: 110 WNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGM 169

Query: 119 LPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAA 178
            PD++   S+ + CA  G   +  G+Q+H + ++ GL+ ++ V ++L ++Y  C  ++  
Sbjct: 170 HPDEFGLGSVFRCCA--GLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEG 227

Query: 179 RRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL 238
             +   +    +VS N II    ++     AL  F  ++   +    VT +SA+SSC+ L
Sbjct: 228 EAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDL 287

Query: 239 GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMI 298
            +L  G+ IH  + K G+DK V V T L+ M+++CG L D+  VF    G DT   SAMI
Sbjct: 288 AALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMI 347

Query: 299 VAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGI 358
            AY  HG G K+I +F++MM     P ++TFL LLYACSH+GL +EG + F  M   YG+
Sbjct: 348 SAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGM 407

Query: 359 VPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
            P +KHY C+VDLLGR+G LDEA   I  +P+    ++W+TLLS+C +  N  +A+++ +
Sbjct: 408 QPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAK 467

Query: 419 RIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFF 478
           R+ ELD      YV+LSN+ A + RW DV  +RK M+D  V K PG S +E+   + +F 
Sbjct: 468 RVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFC 527

Query: 479 SGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITF 538
           +GD  H    ++ + L+E++ +++  GY PD S+V H DMEDEEKE++L +HSEKLAI F
Sbjct: 528 TGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLH-DMEDEEKEVSLSHHSEKLAIAF 586

Query: 539 GLLNTPPGTTIRVVKNLRVC 558
             L+ P G  IRV+KNLRVC
Sbjct: 587 AFLSLPEGVPIRVMKNLRVC 606



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 127/300 (42%), Gaps = 39/300 (13%)

Query: 117 GLLPDDYS--FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174
           G+L  D +  F  L +AC      AL   +QLH FA   G  ++ +    L+  YA+  D
Sbjct: 37  GVLWSDAARLFSHLFRAC-----RALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGD 91

Query: 175 VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN-------------- 220
           + AAR +FE I    V+S+N +   Y ++     A  LF E+ ERN              
Sbjct: 92  LTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNL 151

Query: 221 -----------------LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
                            + P +  + S    CA L  +  G+ +H Y+ + GLD+ + V 
Sbjct: 152 GFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVG 211

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
           ++L  M+ +CG L +  +V   +      + + +I     +G    ++  F  M    V+
Sbjct: 212 SSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVA 271

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
            D +TF+  + +CS    + +G    +    K G+   +    C+V +  R G L ++ R
Sbjct: 272 ADVVTFVSAISSCSDLAALAQG-QQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSER 330


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/544 (38%), Positives = 323/544 (59%), Gaps = 14/544 (2%)

Query: 22  PNAL---SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PN     S+L  CTS   L   +QIH   IKT  Q ++ V + LI+   ++     ++ A
Sbjct: 413 PNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKH---GKLDTA 469

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
           H++   + E D+V +  +  GY++      A+  F E+LN G+  D+  F S + ACA  
Sbjct: 470 HVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACA-- 527

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
           G +AL +G+Q+H  +   G + +L +   L++LYA C  ++ A   FE I     +S+N 
Sbjct: 528 GIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNG 587

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +I+ +A+S    +AL +F ++    L+ +  T  SA+S+ A + ++  GK IH  I K G
Sbjct: 588 LISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRG 647

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
            D  ++V+ ALI  +AKCG ++DA   F  M  K+  +W+AMI  Y+ HG G++++ +FE
Sbjct: 648 FDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFE 707

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
           +M +    P+ +TF+G+L ACSH GLV +G  YF SM  ++G+VP   HY C+VDL+ RA
Sbjct: 708 KMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRA 767

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
           G L  A +FI+E+PI+    +WRTLLS+C+ H N+ + +   + + EL+      YV+LS
Sbjct: 768 GFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLS 827

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           N+ A +G+W+  D  R++M++RGV K PG S IEV N V  F+ GD +H  +  + + L 
Sbjct: 828 NMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLA 887

Query: 496 ELVKELKMVGYVPDT-SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
           EL K+   +GY  D  SL++  D+E E+K+  +  HSEKLAITFGLL+      I V+KN
Sbjct: 888 ELNKKAAEIGYFQDRYSLLN--DVEQEQKDPTVYIHSEKLAITFGLLSLSDTVPIHVMKN 945

Query: 555 LRVC 558
           LRVC
Sbjct: 946 LRVC 949



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 116/380 (30%), Positives = 194/380 (51%), Gaps = 10/380 (2%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  CT  +     +Q+HA+  K     +  V   L+   ++ P   S E    +F ++
Sbjct: 218 SVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEK---VFSKM 274

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
              D V FN++  G ++      A+ LF ++    L PD  +  SLL ACA  GA  L +
Sbjct: 275 QSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGA--LCK 332

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G+QLH + IK G++S++ V   L++LY  CSD++ A  +F       VV +N ++ A+ +
Sbjct: 333 GEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGK 392

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
               +E+  +FR++Q + L P   T  S L +C  +G+LDLG+ IH  + K G    V V
Sbjct: 393 LDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYV 452

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
            + LIDM+AK G+LD A  +   ++  D  +W+A+I  YA H    +++  F+EM+   +
Sbjct: 453 CSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGI 512

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
             D I F   + AC+    +++G    ++     G    +     +V L  R GR+ EAY
Sbjct: 513 QSDNIGFSSAISACAGIQALNQG-RQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAY 571

Query: 383 RFIDELPIKSTPILWRTLLS 402
              +++  K + I W  L+S
Sbjct: 572 LEFEKIDAKDS-ISWNGLIS 590



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/444 (23%), Positives = 198/444 (44%), Gaps = 44/444 (9%)

Query: 17  LCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSME 73
           +C N    + LL  C +   L   K++H   +K    N+  +  KL++          ++
Sbjct: 6   ICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYF---ALGDLD 62

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
               +F+ +P   +  ++ +  G+   K   R + LF  ++   + P + SF S+L+AC+
Sbjct: 63  GVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACS 122

Query: 134 CVGAE-ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
             G    +   +Q+H   I  GL  +  +   LI LYA+   + +AR++F+N+     VS
Sbjct: 123 --GHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVS 180

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           + A+I+ ++++    EA+ LF E+    + PT     S LS C  +   D+G+ +H  + 
Sbjct: 181 WVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVF 240

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           KYG      V  AL+ ++++      A  VF  M  KD  +++++I   A  G    ++ 
Sbjct: 241 KYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALE 300

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL- 371
           +F +M +  + PD +T   LL AC+  G + +G    +S   K GI   +   G ++DL 
Sbjct: 301 LFTKMKRDYLKPDCVTVASLLSACASNGALCKG-EQLHSYVIKAGISSDMIVEGALLDLY 359

Query: 372 ------------------------------LGRAGRLDEAYRFIDELPIKS---TPILWR 398
                                          G+   L E++R   ++ IK        + 
Sbjct: 360 VNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYP 419

Query: 399 TLLSSCSSHNNLGLAKQVIERIFE 422
           ++L +C+S   L L +Q+  ++ +
Sbjct: 420 SILRTCTSVGALDLGEQIHTQVIK 443



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 59/122 (48%)

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
           ++ R +     T +  L  C   GSL   K +H  I K G      +   L+D++   G 
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           LD  V VF++M  +  ++W  +I  +      ++ + +F  M++  VSP EI+F  +L A
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 336 CS 337
           CS
Sbjct: 121 CS 122


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 223/607 (36%), Positives = 337/607 (55%), Gaps = 71/607 (11%)

Query: 20  NTPNALSLLPRCT---SFRGLKQIHAVTIKTHLQN-DLNVLTKLINFCTQNPTTSSMEHA 75
           N    + LL RC    S R L +I A  I + + + D N++   + F   + +  ++ H+
Sbjct: 20  NHRKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIA--VKFIGVSSSHGNLRHS 77

Query: 76  HLLFDR-IPEPDIVLFNTMARGYSRSKTPIRAIFLFVE--LLNSGLLPDDYSFPSLLKA- 131
            L+F+  +  P+I  +N + + +S+       I  F    +L +   PD+Y+F S+LKA 
Sbjct: 78  VLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKAC 137

Query: 132 ---------------------------------------CACVGAEALEEGK-------- 144
                                                  C C+  +  +E          
Sbjct: 138 AGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWN 197

Query: 145 ---QLHCFAIKLG---------LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
                +CF+  +          +  NL   +T+I+ YA   ++E AR++FEN+    VVS
Sbjct: 198 TLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVS 257

Query: 193 YNAIITAYARSSRPNEALSLFRELQ-ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           +NA+I  YA++ +  +A+ LFR++Q E  L P DVT++S LS+CA LG+LDLGKWIH +I
Sbjct: 258 WNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFI 317

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
           ++  ++  + +  AL DM+AKCG + +A  VF  M  +D  +WS +I+  A +G  +++ 
Sbjct: 318 RRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAF 377

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
             F EM++  + P++I+F+GLL AC+H GLVD+G  YF  M   YGI P I+HYGC+VDL
Sbjct: 378 NFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDL 437

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
           L RAGRLD+A   I+ +P++   I+W  LL  C  + +    ++V+ RI ELD +H G  
Sbjct: 438 LSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSL 497

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           V L+N+ A  GR +D    R  M+D   +K PGCS IE+NN V EFF GD  H  S  + 
Sbjct: 498 VYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIY 557

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
             + EL  ++K+ GY P T LV H ++++EEKE AL  HSEKLA+ FGL+NT  GTTIR+
Sbjct: 558 SMIRELKWKMKVAGYKPKTDLVIH-NIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRI 616

Query: 552 VKNLRVC 558
           VKNLRVC
Sbjct: 617 VKNLRVC 623


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 215/605 (35%), Positives = 340/605 (56%), Gaps = 62/605 (10%)

Query: 9   ITQSPPPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQ 65
           I    P    ++  + +++LP C S + +   K++H   I+     D+ V   LI+   +
Sbjct: 253 IVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAK 312

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRS----------------KTPI----- 104
                 ME+A  +F+ +   D+V +N M  GYS+S                  P+     
Sbjct: 313 ---CGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTW 369

Query: 105 --------------RAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFA 150
                          A+ LF +++ SG LP+  +  S+L ACA +GA    +G ++H ++
Sbjct: 370 TAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGA--FSQGTEIHAYS 427

Query: 151 IK----------LGLNSNLYVCTTLINLYAECSDVEAARRIFENI--SEPCVVSYNAIIT 198
           +K           G + +L V   LI++Y++C   +AAR IF++I   E  VV++  +I 
Sbjct: 428 LKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIG 487

Query: 199 AYARSSRPNEALSLFREL--QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI---KK 253
            +A+    N+AL LF E+  +   + P   T+   L +CA L ++ +GK IH Y+    +
Sbjct: 488 GHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHR 547

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
           Y    Y   N  LIDM++KCG +D A  VFD+MS K   +W++M+  Y  HG+G +++ +
Sbjct: 548 YESSAYFVAN-CLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDI 606

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           F++M KA   PD+ITFL +LYACSH G+VD+G +YF SM   YG+ P  +HY C +DLL 
Sbjct: 607 FDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLA 666

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI 433
           R+GRLD+A+R + ++P++ T ++W  LLS+C  H+N+ LA+  + ++ E++  + G Y +
Sbjct: 667 RSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTL 726

Query: 434 LSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKA 493
           +SN+ A AGRW+DV  +R LMK  G+ K PGCS ++       FF GD  H  S  +   
Sbjct: 727 ISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYAL 786

Query: 494 LDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVK 553
           L+ L+  +K +GYVP+T+   H D+++EEK   L  HSEKLA+ +GLL T PG  IR+ K
Sbjct: 787 LESLIDRIKAMGYVPETNFALH-DVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRITK 845

Query: 554 NLRVC 558
           NLRVC
Sbjct: 846 NLRVC 850



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 148/291 (50%), Gaps = 11/291 (3%)

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130
           + ++A L+ +R+     V +N + R + +      AI +   +L +G  PD ++ P +LK
Sbjct: 104 ATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLK 163

Query: 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC- 189
           AC  +   +   G   H      G  SN+++C  L+ +Y+ C  +E A  IF+ I++   
Sbjct: 164 ACGEL--PSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGI 221

Query: 190 --VVSYNAIITAYARSSRPNEALSLFREL------QERNLKPTDVTMLSALSSCALLGSL 241
             V+S+N+I++A+ +SS    AL LF ++      +  N +   +++++ L +C  L ++
Sbjct: 222 DDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAV 281

Query: 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
              K +H    + G    V V  ALID +AKCG +++AV VF+ M  KD  +W+AM+  Y
Sbjct: 282 PQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGY 341

Query: 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
           +  G    +  +F+ M K  +  D +T+  ++   S  G   E  N F  M
Sbjct: 342 SQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 392


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/538 (38%), Positives = 325/538 (60%), Gaps = 11/538 (2%)

Query: 26  SLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  C S R +++   +H   IKT     + + T+LI    +      +  A  +FD +
Sbjct: 67  SILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNK---CDCLGDARGMFDEM 123

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           P+ ++V +  M   YS+      A+ LFVE+L S   P+ ++F ++L +C   G+   E 
Sbjct: 124 PQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSC--YGSLGFET 181

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G+Q+H  AIK    S+++V ++L+++YA+   +  A  +F  + E  VV+  AII+ YA+
Sbjct: 182 GRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQ 241

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
                EAL LFR+LQ   +    VT  S L++ + L +L+ GK +H ++ + G   YV +
Sbjct: 242 MGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVL 301

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA-Q 321
             +LIDM++KCG +  A  +FD+M  +   +W+AM+V Y+ HG   + + +F+ M +  +
Sbjct: 302 LNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENK 361

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD-KYGIVPGIKHYGCMVDLLGRAGRLDE 380
           V PD IT+L +L  CSH  L D G   FY+M + K GI P I HYGC+VDLLGRAGR++E
Sbjct: 362 VKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEE 421

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           A+ FI ++P   T  +W +LL SC  H+++ +   V +++ EL+  + G+YVILSNL A 
Sbjct: 422 AFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYAS 481

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
           AG+WED+  +R LM+++ V K PG S +E++ +V  F + D  H    ++   + EL  +
Sbjct: 482 AGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVANKVKELSIK 541

Query: 501 LKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            K  GYVPD S V + D+++E+KE  L  HSEKLA+ FGL+ TP GTTIRV+KNLR+C
Sbjct: 542 FKEDGYVPDLSCVLY-DVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRIC 598


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/571 (37%), Positives = 322/571 (56%), Gaps = 46/571 (8%)

Query: 25  LSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           L+LL  C   R LK   Q+HA  IKT     L +  +L++   +     S+  A  +FD 
Sbjct: 123 LTLLKFCLKQRALKEGKQVHA-HIKTSGSIGLYISNRLLDMYAK---CGSLVDAEKVFDE 178

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG--AEA 139
           +   D+  +N M  GY +     +A  LF ++ N     D++S+ +++  C       EA
Sbjct: 179 MVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNR----DNFSWTAIISGCVQHNRPEEA 234

Query: 140 LE--------------------------------EGKQLHCFAIKLGLNSNLYVCTTLIN 167
           LE                                 GK++H   +++GL+S+  V  +L++
Sbjct: 235 LELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLD 294

Query: 168 LYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT 227
           +Y +C  +E AR IF+ + E  VVS+  +I  Y ++ R  E  +LFR L   N+ P D T
Sbjct: 295 MYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFT 354

Query: 228 MLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS 287
               L++CA L + DLGK IH Y+ + G D +    +AL+ M++KCG +++A SVF+ + 
Sbjct: 355 FAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILP 414

Query: 288 GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN 347
             D  +W++++V YA HGQ  K++  FE ++K+   PD I F+G+L AC+H GLVD+G  
Sbjct: 415 QPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLE 474

Query: 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
           YF+S+++K+G+   I HY C++DLL RAG+  EA   I+E+PIK    +W  LL  C  H
Sbjct: 475 YFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIH 534

Query: 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSS 467
            NL LAK+  + +FE++  +   YV L+N+ A AG   +   +R+ M  RG++K PG S 
Sbjct: 535 GNLELAKRAAKSLFEIEPENPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMSW 594

Query: 468 IEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIAL 527
           IE+   V  F  GD  H  S ++ + L EL K +K VGYVPDT+ V H D+E E+KE  L
Sbjct: 595 IEIRREVHVFSVGDNSHPKSKEILEYLSELSKRMKEVGYVPDTNFVLH-DVELEQKEENL 653

Query: 528 RYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            YHSEKLA+ FG+++TP GT I+V KNLR C
Sbjct: 654 SYHSEKLAVAFGIISTPSGTPIKVFKNLRTC 684


>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
 gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
 gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/538 (38%), Positives = 311/538 (57%), Gaps = 5/538 (0%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           LSL+   T    L+QIHA+ ++T L  + +V    ++    +     + ++  +F +   
Sbjct: 15  LSLIVSSTGKLHLRQIHALLLRTSLIRNSDVFHHFLSRLALSLIPRDINYSCRVFSQRLN 74

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
           P +   NTM R +S S+TP     LF  L  +  LP +    S    C C+ +  L  G 
Sbjct: 75  PTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKC-CIKSGDLLGGL 133

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           Q+H      G  S+  + TTL++LY+ C +   A ++F+ I +   VS+N + + Y R+ 
Sbjct: 134 QIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNK 193

Query: 205 RPNEALSLFRELQ---ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           R  + L LF +++   +  +KP  VT L AL +CA LG+LD GK +H++I + GL   + 
Sbjct: 194 RTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALN 253

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           ++  L+ M+++CG +D A  VF  M  ++  +W+A+I   A +G G ++I  F EM+K  
Sbjct: 254 LSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFG 313

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD-KYGIVPGIKHYGCMVDLLGRAGRLDE 380
           +SP+E T  GLL ACSH+GLV EG  +F  MR  ++ I P + HYGC+VDLLGRA  LD+
Sbjct: 314 ISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDK 373

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           AY  I  + +K    +WRTLL +C  H ++ L ++VI  + EL     GDYV+L N  + 
Sbjct: 374 AYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYST 433

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
            G+WE V  LR LMK++ +   PGCS+IE+   V EF   D  H    ++ K L E+ ++
Sbjct: 434 VGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQ 493

Query: 501 LKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           LK+ GYV + +   H    +EEK  ALRYHSEKLAI FG+L TPPGTTIRV KNLR C
Sbjct: 494 LKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNLRTC 551


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/560 (36%), Positives = 311/560 (55%), Gaps = 31/560 (5%)

Query: 27  LLPRCTSFRGLKQIHAVTIKT----------HLQ---NDLNVLTKLINFCTQNPTTSSME 73
           L   C + R L+Q+HA    +          HL     DL  LT       + P  + M 
Sbjct: 50  LFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMS 109

Query: 74  ---------------HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118
                           A  LFD +PE ++  +N M  G +       ++  F+++   G+
Sbjct: 110 WNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGM 169

Query: 119 LPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAA 178
            PD++   S+ + CA  G   +  G+Q+H + ++ GL+ ++ V ++L ++Y  C  ++  
Sbjct: 170 HPDEFGLGSVFRCCA--GLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEG 227

Query: 179 RRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL 238
             +   +    +VS N II    ++     AL  F  ++   +    VT +SA+SSC+ L
Sbjct: 228 EAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDL 287

Query: 239 GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMI 298
            +L  G+ IH  + K G+DK V V T L+ M+++CG L D+  VF    G DT   SAMI
Sbjct: 288 AALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMI 347

Query: 299 VAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGI 358
            AY  HG G K+I +F++MM     P ++TFL LLYACSH+GL +EG + F  M   YG+
Sbjct: 348 SAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGM 407

Query: 359 VPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
            P +KHY C+VDLLGR+G LDEA   I  +P+    ++W+TLLS+C +  N  +A+++ +
Sbjct: 408 QPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAK 467

Query: 419 RIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFF 478
           R+ ELD      YV+LSN+ A + RW DV  +RK M+D  V K PG S +E+   + +F 
Sbjct: 468 RVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFC 527

Query: 479 SGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITF 538
           +GD  H    ++ + L+E++ +++  GY PD S+V H DMEDEEKE++L +HSEKLAI F
Sbjct: 528 TGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLH-DMEDEEKEVSLSHHSEKLAIAF 586

Query: 539 GLLNTPPGTTIRVVKNLRVC 558
             L+ P G  IRV+KNLRVC
Sbjct: 587 AFLSLPEGVPIRVMKNLRVC 606



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 127/300 (42%), Gaps = 39/300 (13%)

Query: 117 GLLPDDYS--FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174
           G+L  D +  F  L +AC      AL   +QLH FA   G  ++ +    L+  YA+  D
Sbjct: 37  GVLWSDAARLFSHLFRAC-----RALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGD 91

Query: 175 VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN-------------- 220
           + AAR +FE I    V+S+N +   Y ++     A  LF E+ ERN              
Sbjct: 92  LTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNL 151

Query: 221 -----------------LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
                            + P +  + S    CA L  +  G+ +H Y+ + GLD+ + V 
Sbjct: 152 GFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVG 211

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
           ++L  M+ +CG L +  +V   +      + + +I     +G    ++  F  M    V+
Sbjct: 212 SSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVA 271

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
            D +TF+  + +CS    + +G    +    K G+   +    C+V +  R G L ++ R
Sbjct: 272 ADVVTFVSAISSCSDLAALAQG-QQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSER 330


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/535 (38%), Positives = 317/535 (59%), Gaps = 10/535 (1%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPE 84
           S L +C   RG  Q   +  +    N     T LIN           ++ A  LFD +P+
Sbjct: 20  SELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEMPD 79

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
            ++V + TM   YS S    +A+   + +L  G+ P+ Y++ S+L+AC     + L   +
Sbjct: 80  RNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRAC-----DGLLNLR 134

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           QLH   +K+GL S+++V + LI+ Y++  +   A  +F  +    +V +N+II  +A++S
Sbjct: 135 QLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNS 194

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
             +E L L++ ++  +      T+ S L +C  L  L+LG+ +H ++ KY  D+ + +N 
Sbjct: 195 DGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKY--DQDLILNN 252

Query: 265 ALIDMHAKCGRLDDAVSVFDNM-SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
           AL+DM+ KCG L+DA  +F  M + KD  +WS MI   A +G    ++ +FE M      
Sbjct: 253 ALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPK 312

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
           P+ IT LG+L+ACSH GLV++GW YF SM++ +GI PG +HYGC++DLLGRAG+LDEA +
Sbjct: 313 PNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVK 372

Query: 384 FIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443
            I E+  +   + WR LL +C  H N+ LA    + I +LD +  G Y++LSN+ A + +
Sbjct: 373 LIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANSQK 432

Query: 444 WEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKM 503
           WEDV  +R+ M+ RGV K PGCS IEV+  V  F  GD  H    ++++ L +L++ L  
Sbjct: 433 WEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHPRIEEIKRELSQLIQRLMR 492

Query: 504 VGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +GYVPDT+ V   D+E E+ E +L+YHSEKLAI FGL++ P   TI + KNLR+C
Sbjct: 493 LGYVPDTNFVLQ-DLEGEQMEDSLQYHSEKLAIVFGLMSLPNQKTIHIRKNLRIC 546



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 101/217 (46%), Gaps = 10/217 (4%)

Query: 215 ELQERNLKPTDVTMLSALSSCALL-GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273
           E   RN    D    S L  C L+ G++   + +HE++   G +    +   LI+M+ K 
Sbjct: 5   EAMHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKF 64

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
           G LD+A ++FD M  ++  +W+ MI AY+     HK++     M++  V P+  T+  +L
Sbjct: 65  GLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVL 124

Query: 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
            AC   GL++      +    K G+   +     ++D   + G   +A    +E+ I   
Sbjct: 125 RACD--GLLN--LRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEM-ITGD 179

Query: 394 PILWRTLLSSCSSHNN----LGLAKQVIERIFELDDS 426
            ++W +++   + +++    L L K++    F  D S
Sbjct: 180 LVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQS 216


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/529 (38%), Positives = 321/529 (60%), Gaps = 16/529 (3%)

Query: 38  KQIHAVTIKTHL----QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM 93
           +Q+H + I++ L        + L  + N C++ P       A   FD IP P+ V+   M
Sbjct: 109 RQLHLLAIRSGLFPSDPFSASALLHMYNHCSR-PID-----ARKAFDEIPSPNPVIITAM 162

Query: 94  ARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL 153
           A GY R+     ++ LF +L+ SG         +L+   A            LH   +K 
Sbjct: 163 ASGYVRNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKT 222

Query: 154 GLNSNLYVCTTLINLYAECS--DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALS 211
           GL+ +  V  T+++ YA+    D+ AAR++F+ + E  VVS+N++I  YA++    +AL 
Sbjct: 223 GLDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTM-EKDVVSWNSMIALYAQNGMSADALG 281

Query: 212 LFREL--QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDM 269
           L+R++     ++K   VT+ + L +CA  G++  GK IH  + + GL++ V V T+++DM
Sbjct: 282 LYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDM 341

Query: 270 HAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITF 329
           ++KCGR++ A   F  +  K+  +WSAMI  Y  HG G +++ +F EM ++  +P+ ITF
Sbjct: 342 YSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITF 401

Query: 330 LGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389
           + +L ACSH GL+D+G  ++ +M+ ++GI PG++HYGCMVDLLGRAG LDEAY  I E+ 
Sbjct: 402 ISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMK 461

Query: 390 IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDY 449
           +K    +W  LLS+C  H N+ LA+   +R+FELD ++ G YV+LSN+ A AG W+DV+ 
Sbjct: 462 VKPDAAIWGALLSACRIHKNVELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVER 521

Query: 450 LRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPD 509
           +R L+K RG+ K PG SS+E+      F+ GD  H    ++   L +L+++++  GYVP+
Sbjct: 522 MRVLVKTRGIEKPPGYSSVELKGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQEAGYVPN 581

Query: 510 TSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           T  V H D+++EEK  AL  HSEKLAI F L+N+ PG+ I V+KNLRVC
Sbjct: 582 TGSVLH-DLDEEEKASALHIHSEKLAIAFALMNSVPGSVIHVIKNLRVC 629


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/417 (44%), Positives = 281/417 (67%), Gaps = 2/417 (0%)

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G+ +H   I+ G  S +YV  +L++LYA C DV +A ++F+ + E  +V++N++I  +A 
Sbjct: 7   GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 66

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
           + +P EAL+L+ E+  + +KP   T++S LS+CA +G+L LGK +H Y+ K GL + +  
Sbjct: 67  NGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHS 126

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ- 321
           +  L+D++A+CGR+++A ++FD M  K++ +W+++IV  A +G G ++I +F+ M   + 
Sbjct: 127 SNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEG 186

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           + P EITF+G+LYACSH G+V EG+ YF  MR++Y I P I+H+GCMVDLL RAG++ +A
Sbjct: 187 LLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKA 246

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
           Y +I  +P++   ++WRTLL +C+ H +  LA+    +I +L+ +H GDYV+LSN+ A  
Sbjct: 247 YEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASE 306

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
            RW DV  +RK M   GV KVPG S +EV N V EF  GD  H  S  +   L E+   L
Sbjct: 307 QRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRL 366

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +  GYVP  S V + D+E+EEKE A+ YHSEK+AI F L++TP  + I VVKNLRVC
Sbjct: 367 RSEGYVPQISNV-YVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVC 422



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 154/289 (53%), Gaps = 10/289 (3%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           IH+V I++   + + V   L++        +S   A+ +FD++PE D+V +N++  G++ 
Sbjct: 10  IHSVVIRSGFGSLIYVQNSLLHLYANCGDVAS---AYKVFDKMPEKDLVAWNSVINGFAE 66

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
           +  P  A+ L+ E+ + G+ PD ++  SLL ACA +GA  L  GK++H + IK+GL  NL
Sbjct: 67  NGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTL--GKRVHVYMIKVGLTRNL 124

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE- 218
           +    L++LYA C  VE A+ +F+ + +   VS+ ++I   A +    EA+ LF+ ++  
Sbjct: 125 HSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMEST 184

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLG-KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
             L P ++T +  L +C+  G +  G ++     ++Y ++  ++    ++D+ A+ G++ 
Sbjct: 185 EGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVK 244

Query: 278 DAVSVFDNMSGK-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
            A     +M  + +   W  ++ A   HG     +  F  +   Q+ P+
Sbjct: 245 KAYEYIKSMPMQPNVVIWRTLLGACTVHGDS--DLAEFARIQILQLEPN 291



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 113/226 (50%), Gaps = 13/226 (5%)

Query: 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297
           +  + LG+ IH  + + G    + V  +L+ ++A CG +  A  VFD M  KD  AW+++
Sbjct: 1   MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 60

Query: 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG 357
           I  +A +G+  +++ ++ EM    + PD  T + LL AC+  G +  G      M  K G
Sbjct: 61  INGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM-IKVG 119

Query: 358 IVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
           +   +     ++DL  R GR++EA    DE+  K++ + W +L+   + +   G  K+ I
Sbjct: 120 LTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNS-VSWTSLIVGLAVN---GFGKEAI 175

Query: 418 ERIFELDDSHGG------DYVILSNLCARAGRW-EDVDYLRKLMKD 456
           E +F+  +S  G       +V +   C+  G   E  +Y R++ ++
Sbjct: 176 E-LFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREE 220


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 215/605 (35%), Positives = 340/605 (56%), Gaps = 62/605 (10%)

Query: 9   ITQSPPPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQ 65
           I    P    ++  + +++LP C S + +   K++H   I+     D+ V   LI+   +
Sbjct: 260 IVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAK 319

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRS----------------KTPI----- 104
                 ME+A  +F+ +   D+V +N M  GYS+S                  P+     
Sbjct: 320 ---CGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTW 376

Query: 105 --------------RAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFA 150
                          A+ LF +++ SG LP+  +  S+L ACA +GA    +G ++H ++
Sbjct: 377 TAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGA--FSQGTEIHAYS 434

Query: 151 IK----------LGLNSNLYVCTTLINLYAECSDVEAARRIFENI--SEPCVVSYNAIIT 198
           +K           G + +L V   LI++Y++C   +AAR IF++I   E  VV++  +I 
Sbjct: 435 LKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIG 494

Query: 199 AYARSSRPNEALSLFREL--QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI---KK 253
            +A+    N+AL LF E+  +   + P   T+   L +CA L ++ +GK IH Y+    +
Sbjct: 495 GHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHR 554

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
           Y    Y   N  LIDM++KCG +D A  VFD+MS K   +W++M+  Y  HG+G +++ +
Sbjct: 555 YESSAYFVAN-CLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDI 613

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           F++M KA   PD+ITFL +LYACSH G+VD+G +YF SM   YG+ P  +HY C +DLL 
Sbjct: 614 FDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLA 673

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI 433
           R+GRLD+A+R + ++P++ T ++W  LLS+C  H+N+ LA+  + ++ E++  + G Y +
Sbjct: 674 RSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTL 733

Query: 434 LSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKA 493
           +SN+ A AGRW+DV  +R LMK  G+ K PGCS ++       FF GD  H  S  +   
Sbjct: 734 ISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYAL 793

Query: 494 LDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVK 553
           L+ L+  +K +GYVP+T+   H D+++EEK   L  HSEKLA+ +GLL T PG  IR+ K
Sbjct: 794 LESLIDRIKAMGYVPETNFALH-DVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRITK 852

Query: 554 NLRVC 558
           NLRVC
Sbjct: 853 NLRVC 857



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 148/291 (50%), Gaps = 11/291 (3%)

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130
           + ++A L+ +R+     V +N + R + +      AI +   +L +G  PD ++ P +LK
Sbjct: 111 ATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLK 170

Query: 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC- 189
           AC  +   +   G   H      G  SN+++C  L+ +Y+ C  +E A  IF+ I++   
Sbjct: 171 ACGEL--PSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGI 228

Query: 190 --VVSYNAIITAYARSSRPNEALSLFREL------QERNLKPTDVTMLSALSSCALLGSL 241
             V+S+N+I++A+ +SS    AL LF ++      +  N +   +++++ L +C  L ++
Sbjct: 229 DDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAV 288

Query: 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
              K +H    + G    V V  ALID +AKCG +++AV VF+ M  KD  +W+AM+  Y
Sbjct: 289 PQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGY 348

Query: 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
           +  G    +  +F+ M K  +  D +T+  ++   S  G   E  N F  M
Sbjct: 349 SQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 399


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/512 (39%), Positives = 301/512 (58%), Gaps = 34/512 (6%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           LFD + E D+V ++ +   + +++    AI  FV +   G++ D+    S L ACA    
Sbjct: 332 LFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACA--NL 389

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR----------------- 180
             +  GK +H  ++K+G  S + +   LI +Y++C D+  AR+                 
Sbjct: 390 LVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMI 449

Query: 181 --------------IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV 226
                         IF+++ E  VVS++++I+ YA++   +E L+LF+E+Q    KP + 
Sbjct: 450 SGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDET 509

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
           T++S +S+CA L +L+ GKW+H YIK+ GL   V + T LIDM+ KCG ++ A+ VF  M
Sbjct: 510 TLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGM 569

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
             K    W+A+I+  A +G    S+ MF  M K  V+P+EITF+G+L AC H GLVDEG 
Sbjct: 570 IEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQ 629

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
           ++FYSM   + I P +KHYGCMVDLLGRAG+L EA   ++ +P+      W  LL +C  
Sbjct: 630 HHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKK 689

Query: 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCS 466
           H +  + ++V  ++ EL   H G +V+LSN+ A  G+W+DV  +R +M    VLK+PGCS
Sbjct: 690 HGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCS 749

Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
            IE N V+ EF +GD  H     ++  L E+  +LK+ GY PD + V   D+++EEKE  
Sbjct: 750 MIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEVLL-DVDEEEKEST 808

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           L  HSEKLAI FGL+N  P T IR++KNLR+C
Sbjct: 809 LFRHSEKLAIAFGLINISPPTPIRIMKNLRIC 840



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 186/421 (44%), Gaps = 100/421 (23%)

Query: 57  TKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMA--RGYSRSKTPIRAIFLFVELL 114
           + L+     +  + S+    LL  R P+ +       A  R Y ++ +P  A  L+  +L
Sbjct: 146 SGLLKLMAPSRKSRSVNKGFLLLMRYPQANTWKMPAKASRRAYIQTNSPHFAFTLYKSML 205

Query: 115 NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174
           ++ L  D+Y++P L++AC+   +E   E KQ+H   +KLG +S++YV  TLIN ++ CS+
Sbjct: 206 SNYLGADNYTYPLLIQACSIRRSEW--EAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSN 263

Query: 175 -------------------------------VEAARRIFENISEPCVVSYNAIITAYARS 203
                                          VE A+ I+  + E  +++ N++I  +   
Sbjct: 264 MTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMR 323

Query: 204 SRPNEALSLFRELQERNLKP-------------------------------TDVTMLSAL 232
               EA  LF E+ E+++                                  +V  +SAL
Sbjct: 324 GLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSAL 383

Query: 233 SSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL---------------- 276
           S+CA L  +++GK IH    K G + Y+ +  ALI M++KCG +                
Sbjct: 384 SACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLI 443

Query: 277 ---------------DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
                          D+A ++FD+M  KD  +WS+MI  YA +    +++ +F+EM  + 
Sbjct: 444 SWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSG 503

Query: 322 VSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
             PDE T + ++ AC+    +++G W + Y  R+  G+   +     ++D+  + G ++ 
Sbjct: 504 FKPDETTLVSVISACARLAALEQGKWVHAYIKRN--GLTINVILGTTLIDMYMKCGCVET 561

Query: 381 A 381
           A
Sbjct: 562 A 562



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 141/264 (53%), Gaps = 6/264 (2%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +++A  +FD +PE D+V +++M  GY+++      + LF E+  SG  PD+ +  S++ A
Sbjct: 458 VDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISA 517

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           CA + A  LE+GK +H +  + GL  N+ + TTLI++Y +C  VE A  +F  + E  + 
Sbjct: 518 CARLAA--LEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGIS 575

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK-WIHEY 250
           ++NA+I   A +     +L +F  +++ ++ P ++T +  L +C  +G +D G+   +  
Sbjct: 576 TWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSM 635

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQGHK 309
           I  + +   VK    ++D+  + G+L +A  + + M    D   W A++ A   HG    
Sbjct: 636 IHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEM 695

Query: 310 SILMFEEMMKAQVSPDEITFLGLL 333
              +  ++++ Q  PD   F  LL
Sbjct: 696 GRRVGRKLIELQ--PDHDGFHVLL 717


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/518 (38%), Positives = 297/518 (57%), Gaps = 35/518 (6%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +  A  LFD++P  + + +  M  GY+++     A+ L  EL  SG+LP   S  S+  A
Sbjct: 369 VNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFA 428

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C+ +   ALE G Q+H  A+K+G   N + C  LI +Y +C ++E AR++F  +    +V
Sbjct: 429 CSNI--VALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIV 486

Query: 192 SYNA-------------------------------IITAYARSSRPNEALSLFRELQERN 220
           S+N+                               II+AYA + + NEA+  F+ +   +
Sbjct: 487 SWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEH 546

Query: 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV 280
             P    +   L  C  LG+  +G+ IH    K G+D  + V  ALI M+ KCG   D+ 
Sbjct: 547 ELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCG-CADSR 605

Query: 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG 340
            +FD M  +D   W+ +I  YA HG G ++I M++ M  A V P+E+TF+GLL ACSH G
Sbjct: 606 RIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAG 665

Query: 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400
           LVDEGW +F SM   YG+ P  +HY CMVDLLGR G +  A +FI ++PI+   ++W  L
Sbjct: 666 LVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSAL 725

Query: 401 LSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460
           L +C  H N  + K+  E++F ++ S+ G+YV+LSN+ +  G W +V  +RK+MK +GV+
Sbjct: 726 LGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVI 785

Query: 461 KVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMED 520
           K PGCS  ++ + +  F +GD  H    ++   L+EL   LK  GYVPDT  V H D+++
Sbjct: 786 KEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLH-DIDE 844

Query: 521 EEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           E+KE +L YHSEKLA+ + LL TP G  I+++KNLR+C
Sbjct: 845 EQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRIC 882



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 175/355 (49%), Gaps = 13/355 (3%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           M  A  LF+++PE ++V +  M  GY R +   +A  +F ++   GLLPD  +F S L A
Sbjct: 174 MVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSA 233

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA-ECSDVEAARRIFENISEPCV 190
              +G   L+  + L   A+K G   ++ + T ++N+Y+ + S ++ A + FE++ E   
Sbjct: 234 VKGLG--NLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNE 291

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY 250
            +++ +I A +   R + A++++    ER+   +     + ++  A  G +D  + + E 
Sbjct: 292 YTWSTMIAALSHGGRIDAAIAVY----ERDPVKSIACRTALITGLAQCGRIDDARILFEQ 347

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310
           I     +  V    ALI  + + G +++A  +FD M  ++T +W+ MI  YA +G+  ++
Sbjct: 348 IP----EPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEA 403

Query: 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370
           + + +E+ ++ + P   +   + +ACS+   ++ G    +S+  K G          ++ 
Sbjct: 404 LGLLQELHRSGMLPSLSSLTSIFFACSNIVALETG-TQVHSLAVKVGCQFNSFACNALIT 462

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
           + G+   ++ A +    +  K   + W + L++   ++ L  A+   + +   DD
Sbjct: 463 MYGKCRNMEYARQVFSRMVTKDI-VSWNSFLAALVQNDLLDEARNTFDNMLSRDD 516



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 105/452 (23%), Positives = 184/452 (40%), Gaps = 92/452 (20%)

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG----AEA 139
           E D+V+   +   YSR  + +     F E   S +  ++Y++ +++ A +  G    A A
Sbjct: 256 ERDVVIGTAILNVYSRDTSVLDTAIKFFE---SMIERNEYTWSTMIAALSHGGRIDAAIA 312

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
           + E   +   A +          T LI   A+C  ++ AR +FE I EP VVS+NA+IT 
Sbjct: 313 VYERDPVKSIACR----------TALITGLAQCGRIDDARILFEQIPEPIVVSWNALITG 362

Query: 200 Y-------------------------------ARSSRPNEALSLFRELQERNLKPTDVTM 228
           Y                               A++ R  EAL L +EL    + P+  ++
Sbjct: 363 YMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSL 422

Query: 229 LSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR------------- 275
            S   +C+ + +L+ G  +H    K G         ALI M+ KC               
Sbjct: 423 TSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVT 482

Query: 276 ------------------LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
                             LD+A + FDNM  +D  +W+ +I AYA   Q ++++  F+ M
Sbjct: 483 KDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTM 542

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
                 P+      LL  C   G    G    +++  K G+   +     ++ +  + G 
Sbjct: 543 FCEHELPNSPILTILLGVCGSLGASKIG-QQIHTVAIKLGMDSELIVANALISMYFKCGC 601

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG-----GDYV 432
            D   R I +L  +     W T+++  + H   GL ++ I ++++  +S G       +V
Sbjct: 602 ADS--RRIFDLMEERDIFTWNTIITGYAQH---GLGREAI-KMYQHMESAGVLPNEVTFV 655

Query: 433 ILSNLCARAGRW-EDVDYLRKLMKDRGVLKVP 463
            L N C+ AG   E   + + + +D G+  +P
Sbjct: 656 GLLNACSHAGLVDEGWKFFKSMSQDYGLTPLP 687



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/378 (20%), Positives = 155/378 (41%), Gaps = 56/378 (14%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +FD +P  DI+ +N+M   Y  +  P  A  L+  +    +           +    
Sbjct: 53  AREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGYGRLGRV 112

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF------------ 182
           + A  + +G           L  N      +I+ Y +  D+  ARR+F            
Sbjct: 113 LEARRVFDGM----------LERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWN 162

Query: 183 -------------------ENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKP 223
                              E + E  +VS+  +I+ Y R     +A  +F ++    L P
Sbjct: 163 SMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLP 222

Query: 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK-CGRLDDAVSV 282
                 SALS+   LG+LD+ + +     K G ++ V + TA+++++++    LD A+  
Sbjct: 223 DQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKF 282

Query: 283 FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342
           F++M  ++   WS MI A +  G+   +I ++E      ++       GL    +  G +
Sbjct: 283 FESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGL----AQCGRI 338

Query: 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
           D+    F  + +     P +  +  ++    + G ++EA    D++P ++T I W  +++
Sbjct: 339 DDARILFEQIPE-----PIVVSWNALITGYMQNGMVNEAKELFDKMPFRNT-ISWAGMIA 392

Query: 403 SCS----SHNNLGLAKQV 416
             +    S   LGL +++
Sbjct: 393 GYAQNGRSEEALGLLQEL 410



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 15/187 (8%)

Query: 20  NTPNALSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N+P    LL  C S    K   QIH V IK  + ++L V   LI+   +     S     
Sbjct: 550 NSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCADSRR--- 606

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +FD + E DI  +NT+  GY++      AI ++  + ++G+LP++ +F  LL AC+  G
Sbjct: 607 -IFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAG 665

Query: 137 AEALEEG-KQLHCFAIKLGLN--SNLYVCTTLINLYAECSDVEAARR-IFENISEPCVVS 192
              ++EG K     +   GL      Y C  +++L     DV+ A + I++   EP  V 
Sbjct: 666 --LVDEGWKFFKSMSQDYGLTPLPEHYAC--MVDLLGRTGDVQGAEQFIYDMPIEPDTVI 721

Query: 193 YNAIITA 199
           ++A++ A
Sbjct: 722 WSALLGA 728



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/218 (20%), Positives = 95/218 (43%), Gaps = 13/218 (5%)

Query: 162 CTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNL 221
           C+  I        V  AR +F+ +    ++++N++I+AY  +  P+ A  L+  +   N+
Sbjct: 37  CSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNM 96

Query: 222 KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVS 281
           +   +     LS    LG +   + + + +    L++      A+I  + + G +  A  
Sbjct: 97  RTGAIL----LSGYGRLGRVLEARRVFDGM----LERNTVAWNAMISCYVQNGDITMARR 148

Query: 282 VFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341
           +FD M  +D  +W++M+  Y    Q   +  +FE+M +  +    +   G     +H   
Sbjct: 149 LFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENH--- 205

Query: 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
             + W+ F  M  + G++P   ++   +  +   G LD
Sbjct: 206 -GKAWDIFCKMH-REGLLPDQSNFASALSAVKGLGNLD 241


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/512 (39%), Positives = 301/512 (58%), Gaps = 34/512 (6%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           LFD + E D+V ++ +   + +++    AI  FV +   G++ D+    S L ACA    
Sbjct: 197 LFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACA--NL 254

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR----------------- 180
             +  GK +H  ++K+G  S + +   LI +Y++C D+  AR+                 
Sbjct: 255 LVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMI 314

Query: 181 --------------IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV 226
                         IF+++ E  VVS++++I+ YA++   +E L+LF+E+Q    KP + 
Sbjct: 315 SGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDET 374

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
           T++S +S+CA L +L+ GKW+H YIK+ GL   V + T LIDM+ KCG ++ A+ VF  M
Sbjct: 375 TLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGM 434

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
             K    W+A+I+  A +G    S+ MF  M K  V+P+EITF+G+L AC H GLVDEG 
Sbjct: 435 IEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQ 494

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
           ++FYSM   + I P +KHYGCMVDLLGRAG+L EA   ++ +P+      W  LL +C  
Sbjct: 495 HHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKK 554

Query: 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCS 466
           H +  + ++V  ++ EL   H G +V+LSN+ A  G+W+DV  +R +M    VLK+PGCS
Sbjct: 555 HGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCS 614

Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
            IE N V+ EF +GD  H     ++  L E+  +LK+ GY PD + V   D+++EEKE  
Sbjct: 615 MIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEVLL-DVDEEEKEST 673

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           L  HSEKLAI FGL+N  P T IR++KNLR+C
Sbjct: 674 LFRHSEKLAIAFGLINISPPTPIRIMKNLRIC 705



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 191/419 (45%), Gaps = 99/419 (23%)

Query: 57  TKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS 116
           ++LI F T  P    +++   +F+ I   +  ++N M R Y ++ +P  A  L+  +L++
Sbjct: 14  SRLIKFSTHFPFIH-IDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSN 72

Query: 117 GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD-- 174
            L  D+Y++P L++AC+   +E   E KQ+H   +KLG +S++YV  TLIN ++ CS+  
Sbjct: 73  YLGADNYTYPLLIQACSIRRSEW--EAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMT 130

Query: 175 -----------------------------VEAARRIFENISEPCVVSYNAIITAYARSSR 205
                                        VE A+ I+  + E  +++ N++I  +     
Sbjct: 131 DACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGL 190

Query: 206 PNEALSLFRELQERNLKP-------------------------------TDVTMLSALSS 234
             EA  LF E+ E+++                                  +V  +SALS+
Sbjct: 191 VVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSA 250

Query: 235 CALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL------------------ 276
           CA L  +++GK IH    K G + Y+ +  ALI M++KCG +                  
Sbjct: 251 CANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISW 310

Query: 277 -------------DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
                        D+A ++FD+M  KD  +WS+MI  YA +    +++ +F+EM  +   
Sbjct: 311 NSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFK 370

Query: 324 PDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           PDE T + ++ AC+    +++G W + Y  R+  G+   +     ++D+  + G ++ A
Sbjct: 371 PDETTLVSVISACARLAALEQGKWVHAYIKRN--GLTINVILGTTLIDMYMKCGCVETA 427



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 141/264 (53%), Gaps = 6/264 (2%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +++A  +FD +PE D+V +++M  GY+++      + LF E+  SG  PD+ +  S++ A
Sbjct: 323 VDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISA 382

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           CA + A  LE+GK +H +  + GL  N+ + TTLI++Y +C  VE A  +F  + E  + 
Sbjct: 383 CARLAA--LEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGIS 440

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK-WIHEY 250
           ++NA+I   A +     +L +F  +++ ++ P ++T +  L +C  +G +D G+   +  
Sbjct: 441 TWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSM 500

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM-SGKDTQAWSAMIVAYATHGQGHK 309
           I  + +   VK    ++D+  + G+L +A  + + M    D   W A++ A   HG    
Sbjct: 501 IHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEM 560

Query: 310 SILMFEEMMKAQVSPDEITFLGLL 333
              +  ++++ Q  PD   F  LL
Sbjct: 561 GRRVGRKLIELQ--PDHDGFHVLL 582


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/595 (34%), Positives = 332/595 (55%), Gaps = 62/595 (10%)

Query: 22  PNALSLLPR--------CTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSME 73
           PN  S  PR        C S R LKQ+HA  +KT   +D  + T+++   +       + 
Sbjct: 8   PNTASYYPRLDVPQIKACKSMRELKQVHAFLVKTGQTHDNAIATEILRL-SATSDFRDIG 66

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTP-IRAIFLFVELLNSGLL-PDDYSFPSLLKA 131
           +A  +FD++PE +   +NT+ R  + ++   + A+ +F ++L+   + P+ ++FPS+LKA
Sbjct: 67  YALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKA 126

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVE--------------- 176
           CA +    L EGKQ+H   +K GL  + +V T L+ +Y  C  +E               
Sbjct: 127 CAVMAR--LAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDD 184

Query: 177 --------------------------------AARRIFENISEPCVVSYNAIITAYARSS 204
                                           AAR +F+ +++  VVS+N +I+ YA++ 
Sbjct: 185 VRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNG 244

Query: 205 RPNEALSLF-RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
              EA+ +F R +Q  ++ P  VT++S L + + LG L+LGKW+H Y +K  +     + 
Sbjct: 245 FYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLG 304

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
           +AL+DM+AKCG ++ A+ VF+ +   +   W+A+I   A HG+ +        M K  +S
Sbjct: 305 SALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGIS 364

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
           P ++T++ +L ACSH GLVDEG ++F  M +  G+ P I+HYGCMVDLLGRAG L+EA  
Sbjct: 365 PSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEE 424

Query: 384 FIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443
            I  +P+K   ++W+ LL +   H N+ +  +  E + ++     G YV LSN+ A +G 
Sbjct: 425 LILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGN 484

Query: 444 WEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKM 503
           W+ V  +R +MKD  + K PGCS IE++ V+ EF   D  HS + D+   L+E+  +L +
Sbjct: 485 WDGVAAVRLMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSL 544

Query: 504 VGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            G++PDT+ V    M+++ KE  L YHSEK+A+ FGL++TPP T + +VKNLR+C
Sbjct: 545 EGHMPDTTQVLL-KMDEKHKESVLHYHSEKIAVAFGLISTPPKTPLCIVKNLRIC 598


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/518 (38%), Positives = 297/518 (57%), Gaps = 35/518 (6%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +  A  LFD++P  + + +  M  GY+++     A+ L  EL  SG+LP   S  S+  A
Sbjct: 369 VNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFA 428

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C+ +   ALE G Q+H  A+K+G   N + C  LI +Y +C ++E AR++F  +    +V
Sbjct: 429 CSNI--VALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIV 486

Query: 192 SYNA-------------------------------IITAYARSSRPNEALSLFRELQERN 220
           S+N+                               II+AYA + + NEA+  F+ +   +
Sbjct: 487 SWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEH 546

Query: 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV 280
             P    +   L  C  LG+  +G+ IH    K G+D  + V  ALI M+ KCG   D+ 
Sbjct: 547 ELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCG-CADSR 605

Query: 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG 340
            +FD M  +D   W+ +I  YA HG G ++I M++ M  A V P+E+TF+GLL ACSH G
Sbjct: 606 RIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAG 665

Query: 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400
           LVDEGW +F SM   YG+ P  +HY CMVDLLGR G +  A +FI ++PI+   ++W  L
Sbjct: 666 LVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSAL 725

Query: 401 LSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460
           L +C  H N  + K+  E++F ++ S+ G+YV+LSN+ +  G W +V  +RK+MK +GV+
Sbjct: 726 LGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVI 785

Query: 461 KVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMED 520
           K PGCS  ++ + +  F +GD  H    ++   L+EL   LK  GYVPDT  V H D+++
Sbjct: 786 KEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLH-DIDE 844

Query: 521 EEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           E+KE +L YHSEKLA+ + LL TP G  I+++KNLR+C
Sbjct: 845 EQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRIC 882



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 175/355 (49%), Gaps = 13/355 (3%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           M  A  LF+++PE ++V +  M  GY R +   +A  +F ++   GLLPD  +F S L A
Sbjct: 174 MVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSA 233

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA-ECSDVEAARRIFENISEPCV 190
              +G   L+  + L   A+K G   ++ + T ++N+Y+ + S ++ A + FE++ E   
Sbjct: 234 VKGLG--NLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNE 291

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY 250
            +++ +I A +   R + A++++    ER+   +     + ++  A  G +D  + + E 
Sbjct: 292 YTWSTMIAALSHGGRIDAAIAVY----ERDPVKSIACRTALITGLAQCGRIDDARILFEQ 347

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310
           I     +  V    ALI  + + G +++A  +FD M  ++T +W+ MI  YA +G+  ++
Sbjct: 348 IP----EPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEA 403

Query: 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370
           + + +E+ ++ + P   +   + +ACS+   ++ G    +S+  K G          ++ 
Sbjct: 404 LGLLQELHRSGMLPSLSSLTSIFFACSNIVALETG-TQVHSLAVKVGCQFNSFACNALIT 462

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
           + G+   ++ A +    +  K   + W + L++   ++ L  A+   + +   DD
Sbjct: 463 MYGKCRNMEYARQVFSRMVTKDI-VSWNSFLAALVQNDLLDEARNTFDNMLSRDD 516



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 105/452 (23%), Positives = 184/452 (40%), Gaps = 92/452 (20%)

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG----AEA 139
           E D+V+   +   YSR  + +     F E   S +  ++Y++ +++ A +  G    A A
Sbjct: 256 ERDVVIGTAILNVYSRDTSVLDTAIKFFE---SMIERNEYTWSTMIAALSHGGRIDAAIA 312

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
           + E   +   A +          T LI   A+C  ++ AR +FE I EP VVS+NA+IT 
Sbjct: 313 VYERDPVKSIACR----------TALITGLAQCGRIDDARILFEQIPEPIVVSWNALITG 362

Query: 200 Y-------------------------------ARSSRPNEALSLFRELQERNLKPTDVTM 228
           Y                               A++ R  EAL L +EL    + P+  ++
Sbjct: 363 YMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSL 422

Query: 229 LSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR------------- 275
            S   +C+ + +L+ G  +H    K G         ALI M+ KC               
Sbjct: 423 TSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVT 482

Query: 276 ------------------LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
                             LD+A + FDNM  +D  +W+ +I AYA   Q ++++  F+ M
Sbjct: 483 KDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTM 542

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
                 P+      LL  C   G    G    +++  K G+   +     ++ +  + G 
Sbjct: 543 FCEHELPNSPILTILLGVCGSLGASKIG-QQIHTVAIKLGMDSELIVANALISMYFKCGC 601

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG-----GDYV 432
            D   R I +L  +     W T+++  + H   GL ++ I ++++  +S G       +V
Sbjct: 602 ADS--RRIFDLMEERDIFTWNTIITGYAQH---GLGREAI-KMYQHMESAGVLPNEVTFV 655

Query: 433 ILSNLCARAGRW-EDVDYLRKLMKDRGVLKVP 463
            L N C+ AG   E   + + + +D G+  +P
Sbjct: 656 GLLNACSHAGLVDEGWKFFKSMSQDYGLTPLP 687



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/378 (20%), Positives = 155/378 (41%), Gaps = 56/378 (14%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +FD +P  DI+ +N+M   Y  +  P  A  L+  +    +           +    
Sbjct: 53  AREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGYGRLGRV 112

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF------------ 182
           + A  + +G           L  N      +I+ Y +  D+  ARR+F            
Sbjct: 113 LEARRVFDGM----------LERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWN 162

Query: 183 -------------------ENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKP 223
                              E + E  +VS+  +I+ Y R     +A  +F ++    L P
Sbjct: 163 SMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLP 222

Query: 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK-CGRLDDAVSV 282
                 SALS+   LG+LD+ + +     K G ++ V + TA+++++++    LD A+  
Sbjct: 223 DQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKF 282

Query: 283 FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342
           F++M  ++   WS MI A +  G+   +I ++E      ++       GL    +  G +
Sbjct: 283 FESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGL----AQCGRI 338

Query: 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
           D+    F  + +     P +  +  ++    + G ++EA    D++P ++T I W  +++
Sbjct: 339 DDARILFEQIPE-----PIVVSWNALITGYMQNGMVNEAKELFDKMPFRNT-ISWAGMIA 392

Query: 403 SCS----SHNNLGLAKQV 416
             +    S   LGL +++
Sbjct: 393 GYAQNGRSEEALGLLQEL 410



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 15/187 (8%)

Query: 20  NTPNALSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N+P    LL  C S    K   QIH V IK  + ++L V   LI+   +     S     
Sbjct: 550 NSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCADSRR--- 606

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +FD + E DI  +NT+  GY++      AI ++  + ++G+LP++ +F  LL AC+  G
Sbjct: 607 -IFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAG 665

Query: 137 AEALEEG-KQLHCFAIKLGLN--SNLYVCTTLINLYAECSDVEAARR-IFENISEPCVVS 192
              ++EG K     +   GL      Y C  +++L     DV+ A + I++   EP  V 
Sbjct: 666 --LVDEGWKFFKSMSQDYGLTPLPEHYAC--MVDLLGRTGDVQGAEQFIYDMPIEPDTVI 721

Query: 193 YNAIITA 199
           ++A++ A
Sbjct: 722 WSALLGA 728



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/218 (20%), Positives = 95/218 (43%), Gaps = 13/218 (5%)

Query: 162 CTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNL 221
           C+  I        V  AR +F+ +    ++++N++I+AY  +  P+ A  L+  +   N+
Sbjct: 37  CSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNM 96

Query: 222 KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVS 281
           +   +     LS    LG +   + + + +    L++      A+I  + + G +  A  
Sbjct: 97  RTGAIL----LSGYGRLGRVLEARRVFDGM----LERNTVAWNAMISCYVQNGDITMARR 148

Query: 282 VFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341
           +FD M  +D  +W++M+  Y    Q   +  +FE+M +  +    +   G     +H   
Sbjct: 149 LFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENH--- 205

Query: 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
             + W+ F  M  + G++P   ++   +  +   G LD
Sbjct: 206 -GKAWDIFCKMH-REGLLPDQSNFASALSAVKGLGNLD 241


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/525 (39%), Positives = 291/525 (55%), Gaps = 38/525 (7%)

Query: 69  TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSL 128
              ++ A    D + E  +V +N M  GY      + A+ +F ++   G+  D++++ S+
Sbjct: 238 NGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSV 297

Query: 129 LKACACVGAEALEEGKQLHCFAIKL----GLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
           L ACA  G      GKQ+H + ++      L+ +L V   L  LY +C  V+ AR++F  
Sbjct: 298 LSACANAGF--FLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQ 355

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNL----------------------- 221
           +    +VS+NAI++ Y  + R +EA S F E+ ERNL                       
Sbjct: 356 MPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLF 415

Query: 222 --------KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273
                   +P D     A+ +CA L +L  G+ +H  + + G D  +    ALI M+AKC
Sbjct: 416 NRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKC 475

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
           G ++ A  +F  M   D+ +W+AMI A   HG G +++ +FE M+K  + PD ITFL +L
Sbjct: 476 GVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVL 535

Query: 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
             CSH GLV+EG  YF SM   YGI PG  HY  M+DLL RAG+  EA   I+ +P++  
Sbjct: 536 STCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPG 595

Query: 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKL 453
           P +W  LL+ C  H N+ L  Q  ER+FEL   H G YV+LSN+ A  GRW+DV  +RKL
Sbjct: 596 PPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKL 655

Query: 454 MKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLV 513
           M+D+GV K PGCS IEV N V  F   D VH     +   L+EL  +++ +GY+PDT  V
Sbjct: 656 MRDKGVKKEPGCSWIEVENKVHVFLVDDIVHPEVQAVYNYLEELGLKMRKLGYIPDTKFV 715

Query: 514 HHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            H DME E+KE  L  HSEKLA+ FGLL  P G T+RV KNLR+C
Sbjct: 716 LH-DMESEQKEYVLSTHSEKLAVGFGLLKLPLGATVRVFKNLRIC 759



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 119/501 (23%), Positives = 209/501 (41%), Gaps = 116/501 (23%)

Query: 33  SFRGLKQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPDIVL-- 89
           S+   + +HA  I +  +    +L +LI+ +C     +S +  AH LFD I +PDIV   
Sbjct: 30  SYSIARTVHAHMIASGFKPRGYILNRLIDVYCK----SSDLVSAHHLFDEIRQPDIVART 85

Query: 90  -------------------------------FNTMARGYSRSKTPIRAIFLFVELLNSGL 118
                                          +N M  GYS +     AI LF +LL +G 
Sbjct: 86  TLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGF 145

Query: 119 LPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG-------LNSNLYV---------- 161
            PD+++F S+L A A +  E  ++ +Q+HC  +K G       LN+ L V          
Sbjct: 146 RPDNFTFTSVLGALALI-VEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLV 204

Query: 162 -----------------------CTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
                                   TT+I  Y    +++AAR+  + ++E  VV++NA+I+
Sbjct: 205 SSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMIS 264

Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY---- 254
            Y       EAL +FR++    ++  + T  S LS+CA  G    GK +H YI +     
Sbjct: 265 GYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRP 324

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY------------- 301
            LD  + VN AL  ++ KCG++D+A  VF+ M  KD  +W+A++  Y             
Sbjct: 325 SLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFF 384

Query: 302 ------------------ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVD 343
                             A +G G +S+ +F  M      P +  F G + AC+    + 
Sbjct: 385 EEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALM 444

Query: 344 EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
            G    ++   + G    +     ++ +  + G ++ A+     +P   + + W  ++++
Sbjct: 445 HG-RQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDS-VSWNAMIAA 502

Query: 404 CSSHNNLGLAKQVIERIFELD 424
              H +   A ++ E + + D
Sbjct: 503 LGQHGHGAQALELFELMLKED 523


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 223/576 (38%), Positives = 321/576 (55%), Gaps = 64/576 (11%)

Query: 17  LCTNTPNALS---LLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNP--- 67
           LC   PN+ +   LL  C         KQIH   +K  L++D  V T LIN   QN    
Sbjct: 125 LCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELG 184

Query: 68  ------TTSSM-------------------EHAHLLFDRIPEPDIVLFNTMARGYSRSKT 102
                 + SS+                   + A  LF+ IP  D V +N M  GY++S  
Sbjct: 185 YAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGR 244

Query: 103 PIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVC 162
              A+  F E+  + + P++ +  ++L ACA  G+  LE G  +  +    GL SNL + 
Sbjct: 245 FEEALAFFQEMKRANVAPNESTMVTVLSACAQSGS--LELGNWVRSWIEDHGLGSNLRLV 302

Query: 163 TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK 222
             LI++Y++C D++ AR +FE I E  ++S+N +I  Y+  +   EAL+LFR++Q+ N++
Sbjct: 303 NALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVE 362

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD-KYVKVNTALIDMHAKCGRLDDAVS 281
           P DVT +S L +CA LG+LDLGKWIH YI K  L      + T+LIDM+AKCG ++ A  
Sbjct: 363 PNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQ 422

Query: 282 VFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341
           VF  M  K   +W+AMI   A HG  + ++ +F +M      PD+ITF+G+L ACSH GL
Sbjct: 423 VFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGL 482

Query: 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
           V+ G   F SM + Y I P ++HYGCM+DLLGRAG  DEA   +  + +K    +W +LL
Sbjct: 483 VELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLL 542

Query: 402 SSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLK 461
            +C  H N+ L +   + +FEL+  + G YV+LSN+ A AGRW+DV  +R  + D+G+ K
Sbjct: 543 GACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKK 602

Query: 462 VPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL-KMVGYVPDTSLVHHGDMED 520
                                      D+ K LDE+ +   +  G VPDTS V + DM++
Sbjct: 603 -------------------------XQDIYKMLDEIDQSFGERPGXVPDTSEVLY-DMDE 636

Query: 521 EEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLR 556
           E KE +L +HSEKLAI FGL++T P TTIR+VKNLR
Sbjct: 637 EWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLR 672



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 152/317 (47%), Gaps = 38/317 (11%)

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA--ECSDVEAARRIFE 183
           PSL     C   ++ +  KQ+H   IK GL++  +  + LI   A     ++  A  +FE
Sbjct: 34  PSLTLLSTC---KSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFE 90

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
           +I +P    +N +I   + SS P  A+  +  +    ++P   T    L SCA +G+   
Sbjct: 91  SIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQE 150

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR---------------------------- 275
           GK IH ++ K GL+    V+T+LI+M+A+ G                             
Sbjct: 151 GKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTL 210

Query: 276 ---LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
              LDDA  +F+ +  +D  +W+AMI  YA  G+  +++  F+EM +A V+P+E T + +
Sbjct: 211 RGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTV 270

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L AC+ +G ++ G N+  S  + +G+   ++    ++D+  + G LD+A    + +  K 
Sbjct: 271 LSACAQSGSLELG-NWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKD 329

Query: 393 TPILWRTLLSSCSSHNN 409
             I W  ++   S  N+
Sbjct: 330 I-ISWNVMIGGYSHMNS 345


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/545 (37%), Positives = 326/545 (59%), Gaps = 13/545 (2%)

Query: 19  TNTPNALSLLPRC---TSFRGLKQIHAVTIKTHLQNDLNVLTKLIN--FCTQNPTTSSME 73
            N    L+LLP C   +    L+ +H  +++   Q       +LIN  F        S+ 
Sbjct: 414 VNEVTILNLLPACLEESELLSLRALHGYSLRHSFQ-----YKELINNAFIAAYAKCGSLV 468

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
            A  +F  +    +  +N +  G++++  PI+A+  + E+   G+LPDD+S  SLL AC 
Sbjct: 469 FAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACG 528

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
            +G   L+ GK++H F ++ GL  N +V  +L++LY  CS     R  FE + +   V +
Sbjct: 529 RLGL--LQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCW 586

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           NA+++ Y+++  PNEALSLFR++    L+P ++ + S L +C+ L +L LGK +H +  K
Sbjct: 587 NAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALK 646

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
             L +   V  +L+DM+AK G L  +  +F+ ++GK+  +W+ MI  +  HGQG+K++ +
Sbjct: 647 NSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVEL 706

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           FE+M ++   PD  TFLG+L AC H GLV EG NY   M+  Y + P ++HY C++D+LG
Sbjct: 707 FEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLG 766

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI 433
           RAGRL+EA  FI+E+P +    +W +LLSS  ++ +L + ++  E++  L+ +    Y++
Sbjct: 767 RAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYIL 826

Query: 434 LSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKA 493
           LSNL A AG+W+ V  +R+ MKD  + K  GCS IE+   V  F +G+  +  S +++K 
Sbjct: 827 LSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKM 886

Query: 494 LDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVK 553
            + L K++  +GY PD S V H ++E+ EK   L+ HSEK+AI FG LNT  GTT+R+ K
Sbjct: 887 WNRLEKQIVEIGYTPDCSCVLH-ELEEVEKRKILKGHSEKVAICFGFLNTKEGTTLRISK 945

Query: 554 NLRVC 558
           NLR+C
Sbjct: 946 NLRIC 950



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 98/312 (31%), Positives = 164/312 (52%), Gaps = 9/312 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K +H + +K  L  DL V   +I    +      ++ A  LFD++PE +++ +N++ RG+
Sbjct: 230 KSVHGMAVKMGLIMDLFVGNAMIALYGK---CGFLDEAVELFDKMPEQNLISWNSLIRGF 286

Query: 98  SRSKTPIRAIFLFVELLNSG--LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155
           S +   + A   F  LL SG  L+PD  +  +LL  C+  G   ++ G  +H  A+KLGL
Sbjct: 287 SENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCS--GEGNVDVGMVIHGMAVKLGL 344

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
              L VC  LI++Y++C  +  A  +F  I    VVS+N++I AY+R     E   L R+
Sbjct: 345 VHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRK 404

Query: 216 L--QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273
           +  +E  ++  +VT+L+ L +C     L   + +H Y  ++       +N A I  +AKC
Sbjct: 405 MWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKC 464

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
           G L  A  VF  M+ K   +W+A+I  +A +G   K++  + EM +  + PD+ + + LL
Sbjct: 465 GSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLL 524

Query: 334 YACSHTGLVDEG 345
            AC   GL+  G
Sbjct: 525 LACGRLGLLQYG 536



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 168/319 (52%), Gaps = 14/319 (4%)

Query: 27  LLPRCTSFR----GLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           LL +C  ++    G K    + + +    D  + T+LI   T          + L+FDR+
Sbjct: 113 LLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLI---TMYSICGYPLESRLVFDRL 169

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN-SGLLPDDYSFPSLLKACACVGAEALE 141
              ++  +N +  GY R++    AI  F+EL++ +   PD+++FP L+KAC   G   + 
Sbjct: 170 LNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKAC--TGKCDIH 227

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            GK +H  A+K+GL  +L+V   +I LY +C  ++ A  +F+ + E  ++S+N++I  ++
Sbjct: 228 LGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFS 287

Query: 202 RSSRPNEALSLFRELQER--NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
            +    EA   FR L E    L P   TM++ L  C+  G++D+G  IH    K GL   
Sbjct: 288 ENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHE 347

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           + V  ALIDM++KCG L +A  +F  +  K   +W++MI AY+  G   ++  +  +M  
Sbjct: 348 LMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWM 407

Query: 320 AQ--VSPDEITFLGLLYAC 336
            +  +  +E+T L LL AC
Sbjct: 408 EEELMEVNEVTILNLLPAC 426



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 136/276 (49%), Gaps = 6/276 (2%)

Query: 134 CVGAEALEEGKQL-HCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
           C   + +E G++L     +    + +  + T LI +Y+ C     +R +F+ +    +  
Sbjct: 117 CGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQ 176

Query: 193 YNAIITAYARSSRPNEALSLFREL-QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           +NA+++ Y R+   +EA+  F EL      +P + T    + +C     + LGK +H   
Sbjct: 177 WNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMA 236

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            K GL   + V  A+I ++ KCG LD+AV +FD M  ++  +W+++I  ++ +G   ++ 
Sbjct: 237 VKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAY 296

Query: 312 LMFEEMMKAQ--VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369
             F  ++++   + PD  T + LL  CS  G VD G    + M  K G+V  +     ++
Sbjct: 297 RAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGM-VIHGMAVKLGLVHELMVCNALI 355

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS 405
           D+  + G L EA     ++  KS  + W +++ + S
Sbjct: 356 DMYSKCGCLSEAAILFRKIENKSV-VSWNSMIGAYS 390



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 103/237 (43%), Gaps = 12/237 (5%)

Query: 197 ITAYARSSRPNEALSLFRELQERN----LKPTDVTMLSALSSCALLGSLDLGKWIHEYI- 251
           I+    +   N AL   +   + N    L      M   L  C    ++++G+ + E + 
Sbjct: 75  ISKLCEAGDLNGALDFLQRAWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKLDEMLC 134

Query: 252 --KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
              ++  D    +NT LI M++ CG   ++  VFD +  K+   W+A++  Y  +    +
Sbjct: 135 VSSQFSGD--FVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDE 192

Query: 310 SILMFEEMMKA-QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
           +I  F E++   +  PD  TF  L+ AC+    +  G    + M  K G++  +     M
Sbjct: 193 AIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLG-KSVHGMAVKMGLIMDLFVGNAM 251

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
           + L G+ G LDEA    D++P +   I W +L+   S +     A +    + E  D
Sbjct: 252 IALYGKCGFLDEAVELFDKMP-EQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGD 307


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/552 (36%), Positives = 320/552 (57%), Gaps = 37/552 (6%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNT----- 92
           +QIH   +K    + + V + L++  ++    S    A  +FD +PE ++V++NT     
Sbjct: 163 RQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISC---ARKVFDELPEKNVVMYNTLIMGL 219

Query: 93  --------------------------MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFP 126
                                     M  G++++     AI +F E+    L  D Y+F 
Sbjct: 220 MRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFG 279

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS 186
           S+L AC   G  AL+EGKQ+H + I+     N++V + L+++Y +C ++++A  +F+ ++
Sbjct: 280 SVLTACG--GVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMT 337

Query: 187 EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW 246
              VVS+ A++  Y ++    EA+  F ++Q+  ++P D T+ S +SSCA L SL+ G  
Sbjct: 338 CKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQ 397

Query: 247 IHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ 306
            H      GL  ++ V+ AL+ ++ KCG ++D+  +F+ +S KD   W+A++  YA  G+
Sbjct: 398 FHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGK 457

Query: 307 GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG 366
            +++I +FE M+   + PD++TF+G+L ACS  GLV++G   F SM +++GIVP   HY 
Sbjct: 458 ANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYT 517

Query: 367 CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
           CM+DL  RAGR++EA  FI+++P     I W TLLSSC  + N+ + K   E + ELD  
Sbjct: 518 CMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPH 577

Query: 427 HGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSY 486
           +   YV+LS++ A  G+WE+V  LRK M+D+G+ K PGCS I+  N V  F + D  + +
Sbjct: 578 NTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNPF 637

Query: 487 STDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPG 546
           S  +   L++L  ++   GYVPD + V H D+ D EK   L +HSEKLAI FGLL  PPG
Sbjct: 638 SDQIYSELEKLNYKMIKEGYVPDMNSVLH-DVGDSEKIKMLNHHSEKLAIAFGLLFIPPG 696

Query: 547 TTIRVVKNLRVC 558
             IRVVKNLRVC
Sbjct: 697 LPIRVVKNLRVC 708



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 108/433 (24%), Positives = 213/433 (49%), Gaps = 50/433 (11%)

Query: 69  TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLF-VELLNSGLLP-DDYSFP 126
            S ME+   LFD +P  D V +N++  GY+      +++  + + L N G    +  +F 
Sbjct: 91  VSEMEY---LFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFS 147

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS 186
           +LL   +  G   L  G+Q+H   +K G  S ++V + L+++Y++   +  AR++F+ + 
Sbjct: 148 TLLILASKRGCVKL--GRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELP 205

Query: 187 EPCVVSYN-------------------------------AIITAYARSSRPNEALSLFRE 215
           E  VV YN                               ++IT + ++    +A+ +FRE
Sbjct: 206 EKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFRE 265

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
           ++  NL+    T  S L++C  + +L  GK +H YI +      + V +AL+DM+ KC  
Sbjct: 266 MKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKN 325

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           +  A +VF  M+ K+  +W+AM+V Y  +G   +++  F +M K  + PD+ T   ++ +
Sbjct: 326 IKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISS 385

Query: 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
           C++   ++EG   F++     G++  I     +V L G+ G +++++R  +E+  K   +
Sbjct: 386 CANLASLEEGAQ-FHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKD-EV 443

Query: 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG-----GDYVILSNLCARAGRWEDVDYL 450
            W  L+   S +   G A + I  +FE   +HG       ++ + + C+RAG  E  + +
Sbjct: 444 TWTALV---SGYAQFGKANETIG-LFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQI 499

Query: 451 -RKLMKDRGVLKV 462
              ++ + G++ +
Sbjct: 500 FESMINEHGIVPI 512



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 152/287 (52%), Gaps = 12/287 (4%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDR 81
           S+L  C     L   KQ+HA  I+T  ++++ V + L++ +C       +++ A  +F +
Sbjct: 280 SVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYC----KCKNIKSAEAVFKK 335

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +   ++V +  M  GY ++     A+  F ++   G+ PDD++  S++ +CA +   +LE
Sbjct: 336 MTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLA--SLE 393

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           EG Q H  A+  GL S + V   L+ LY +C  +E + R+F  IS    V++ A+++ YA
Sbjct: 394 EGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYA 453

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE-YIKKYGLDKYV 260
           +  + NE + LF  +    LKP  VT +  LS+C+  G ++ G  I E  I ++G+    
Sbjct: 454 QFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQ 513

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQ 306
              T +ID+ ++ GR+++A +  + M    D  +W+ ++ +   +G 
Sbjct: 514 DHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGN 560



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 114/277 (41%), Gaps = 66/277 (23%)

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
           C       + K LH   IK       ++   LI+ YA+   +  A ++F+ +  P + S+
Sbjct: 19  CCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSW 78

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL--------------- 238
           N I++AY++  R +E   LF  +  R+    + +++S  + C L+               
Sbjct: 79  NTILSAYSKLGRVSEMEYLFDAMPRRDGVSWN-SLISGYAGCGLIYQSVKAYNLMLKNDG 137

Query: 239 -------------------GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK------- 272
                              G + LG+ IH ++ K+G   YV V + L+DM++K       
Sbjct: 138 SFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCA 197

Query: 273 ------------------------CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
                                   CGR++D+  +F  M  +D+ +W++MI  +  +G   
Sbjct: 198 RKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDR 257

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
            +I +F EM    +  D+ TF  +L AC     + EG
Sbjct: 258 DAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEG 294


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/537 (37%), Positives = 319/537 (59%), Gaps = 11/537 (2%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  CTS   L   +QIH   IK+  Q ++ V + LI+   ++     ++ A  +  R+
Sbjct: 420 SILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKH---GELDTARGILQRL 476

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
            E D+V +  M  GY++      A+ LF E+ N G+  D+  F S + ACA  G +AL +
Sbjct: 477 REEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACA--GIQALNQ 534

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G+Q+H  +   G + +L +   L++LYA C   + A   FE I     +S+NA+I+ +A+
Sbjct: 535 GQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQ 594

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
           S    EAL +F ++ +  ++    T  SA+S+ A   ++  GK IH  + K G D   + 
Sbjct: 595 SGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEA 654

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
           +  LI +++KCG ++DA   F  M  K+  +W+AMI  Y+ HG G +++ +FEEM +  +
Sbjct: 655 SNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGL 714

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            P+ +TF+G+L ACSH GLV+EG +YF SM  ++G+VP  +HY C+VDLLGRA  L  A 
Sbjct: 715 MPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAR 774

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
            FI+E+PI+   ++WRTLLS+C+ H N+ + +     + EL+      YV+LSN+ A +G
Sbjct: 775 EFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSG 834

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           +W+  D  R++MKDRGV K PG S IEV N +  FF GD +H  +  + + +D+L +   
Sbjct: 835 KWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDLNERAG 894

Query: 503 MVGYVPDT-SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +GYV D  +L++  D+E E+K+     HSEKLA+ FGLL+      IRV+KNLRVC
Sbjct: 895 EIGYVQDRYNLLN--DVEQEQKDPTAYIHSEKLAVAFGLLSLTNTMPIRVIKNLRVC 949



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 117/398 (29%), Positives = 198/398 (49%), Gaps = 10/398 (2%)

Query: 26  SLLPRCTS---FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  CT    F+  +Q+H   +K  L ++  V   L+   ++     + E    +F ++
Sbjct: 218 SVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQ---IFSKM 274

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
              D + +N++  G ++     RA+ LF ++    + PD  +  SLL ACA VGA    +
Sbjct: 275 HRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGY--K 332

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           GKQLH + IK+G++S+L +  +L++LY +C D+E A   F       VV +N ++ AY +
Sbjct: 333 GKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQ 392

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
               +E+  +F ++Q   L P   T  S L +C  LG+LDLG+ IH  + K G    V V
Sbjct: 393 LGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYV 452

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
            + LIDM+AK G LD A  +   +  +D  +W+AMI  Y  H    +++ +F+EM    +
Sbjct: 453 CSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGI 512

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
             D I F   + AC+    +++G    ++     G    +     +V L  R GR  +AY
Sbjct: 513 RSDNIGFSSAISACAGIQALNQG-QQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAY 571

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
              +++  K   I W  L+S  +   +   A QV  ++
Sbjct: 572 LAFEKIDAKDN-ISWNALISGFAQSGHCEEALQVFSQM 608



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 194/395 (49%), Gaps = 9/395 (2%)

Query: 19  TNTPNALSLLPRC---TSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
            N    L L   C    S    K++HA   K+    +  + ++LI+    +     +++A
Sbjct: 8   ANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAH---GEVDNA 64

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
             LFD IP  ++  +N +  G    K   + + LF  ++   + PD+ +F S+L+AC+  
Sbjct: 65  IKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSG- 123

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
           G    +  +Q+H   I  G  S+  VC  LI+LY++   V+ A+ +FE +     VS+ A
Sbjct: 124 GKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVA 183

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +I+  +++ R +EA+ LF ++ +  + PT     S LS+C  +    LG+ +H +I K+G
Sbjct: 184 MISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWG 243

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
           L     V  AL+ ++++ G L  A  +F  M  +D  +++++I   A  G   +++ +FE
Sbjct: 244 LSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFE 303

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
           +M    + PD +T   LL AC+  G   +G    +S   K G+   +   G ++DL  + 
Sbjct: 304 KMQLDCMKPDCVTVASLLSACASVGAGYKG-KQLHSYVIKMGMSSDLIIEGSLLDLYVKC 362

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
             ++ A+ +      ++  +LW  +L +     NL
Sbjct: 363 FDIETAHEYFLTTETENV-VLWNVMLVAYGQLGNL 396



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 99/235 (42%), Gaps = 34/235 (14%)

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
           ++ER ++    T L     C   GSL   K +H  I K G D    + + LID++   G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           +D+A+ +FD++   +   W+ +I          + + +F  M+   V+PDE TF  +L A
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 336 CS------------HTGLVDEGW-------NYFYSMRDKYGIVPGIK------------H 364
           CS            H  ++  G+       N    +  K G V   K             
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVS 180

Query: 365 YGCMVDLLGRAGRLDEAYRFIDEL---PIKSTPILWRTLLSSCSSHNNLGLAKQV 416
           +  M+  L + GR DEA     ++    +  TP ++ ++LS+C+      L +Q+
Sbjct: 181 WVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQL 235



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 110/244 (45%), Gaps = 20/244 (8%)

Query: 23  NALSLLPRCTSFRGLKQIHAVTIKTHLQNDL---NVLTKLINFCTQNPTTSSMEHAHLLF 79
           +A+S      + +  KQIHA+ IKT   ++    NVL  L + C       S+E A   F
Sbjct: 622 SAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKC------GSIEDAKREF 675

Query: 80  DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEA 139
             +PE ++V +N M  GYS+      A+ LF E+   GL+P+  +F  +L AC+ VG   
Sbjct: 676 FEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVG--L 733

Query: 140 LEEG-KQLHCFAIKLGL--NSNLYVCTTLINLYAECSDVEAARRIFENIS-EPCVVSYNA 195
           + EG       + + GL      YVC  +++L    + +  AR   E +  EP  + +  
Sbjct: 734 VNEGLSYFRSMSKEHGLVPKPEHYVC--VVDLLGRAALLCCAREFIEEMPIEPDAMIWRT 791

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSC-ALLGSLDLGKWIHEYIKKY 254
           +++A   +   N  +  F       L+P D      LS+  A+ G  D      + +K  
Sbjct: 792 LLSAC--TVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDR 849

Query: 255 GLDK 258
           G+ K
Sbjct: 850 GVKK 853


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/537 (37%), Positives = 313/537 (58%), Gaps = 6/537 (1%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           P  L    R +S +    +H++ +K    +D+  +T L++  +    +  +  AH LFD 
Sbjct: 115 PLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYS---GSGRLNDAHKLFDE 171

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           IP+  +V +  +  GY+ S     AI LF +++  G+ PD Y    +L AC  VG   L+
Sbjct: 172 IPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGD--LD 229

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G+ +  +  ++ +  N +V TTL+NLYA+C  +E AR +F+++ E  +V+++ +I  YA
Sbjct: 230 SGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYA 289

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
            +S P E + LF ++ + NLKP   +++  LSSCA LG+LDLG+W    I ++     + 
Sbjct: 290 SNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLF 349

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           +  ALIDM+AKCG +     VF  M  KD    +A I   A +G    S  +F +  K  
Sbjct: 350 MANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLG 409

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           +SPD  TFLGLL  C H GL+ +G  +F ++   Y +   ++HYGCMVDL GRAG LD+A
Sbjct: 410 ISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDA 469

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
           YR I ++P++   I+W  LLS C    +  LA+ V++ +  L+  + G+YV LSN+ +  
Sbjct: 470 YRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVG 529

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           GRW++   +R +M  +G+ K+PG S IE+   V EF + D  H  S  +   L++L  E+
Sbjct: 530 GRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEM 589

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +++G+VP T  V   D+E+EEKE  L YHSEKLA+  GL++T  G  IRVVKNLRVC
Sbjct: 590 RLMGFVPTTEFVFF-DVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVC 645



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 224/436 (51%), Gaps = 14/436 (3%)

Query: 15  PKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQND---LNVLTKLINFCTQNPTTSS 71
           P   +      +L+    +   LKQIH   I  HL +D   +N+L K   F  Q      
Sbjct: 7   PSATSKVQQIKTLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQT----- 61

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
            ++++LLF     P+I L+N++  G+  +      + LF+ +   GL    ++FP +LKA
Sbjct: 62  -KYSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKA 120

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C    +  L  G  LH   +K G N ++   T+L+++Y+    +  A ++F+ I +  VV
Sbjct: 121 CTRASSRKL--GIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVV 178

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           ++ A+ + Y  S R  EA+ LF+++ E  +KP    ++  LS+C  +G LD G+WI +Y+
Sbjct: 179 TWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYM 238

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
           ++  + K   V T L++++AKCG+++ A SVFD+M  KD   WS MI  YA++    + I
Sbjct: 239 EEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGI 298

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +F +M++  + PD+ + +G L +C+  G +D G  +  S+ D++  +  +     ++D+
Sbjct: 299 ELFLQMLQENLKPDQFSIVGFLSSCASLGALDLG-EWGISLIDRHEFLTNLFMANALIDM 357

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS-HGGD 430
             + G +   +    E+  K   I+    +S  + + ++ L+  V  +  +L  S  G  
Sbjct: 358 YAKCGAMARGFEVFKEMKEKDIVIM-NAAISGLAKNGHVKLSFAVFGQTEKLGISPDGST 416

Query: 431 YVILSNLCARAGRWED 446
           ++ L   C  AG  +D
Sbjct: 417 FLGLLCGCVHAGLIQD 432


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/542 (38%), Positives = 312/542 (57%), Gaps = 9/542 (1%)

Query: 20  NTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N  + LS+L  C +   L   K +HA  +   L +D+ V T LI   T   T  S+E A 
Sbjct: 258 NKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYT---TCGSIEGAR 314

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +FD +   D+V +  M  GY+ +     A  LF  +   G+ PD  ++  ++ ACA   
Sbjct: 315 RVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAI-- 372

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
           +  L   +++H      G  ++L V T L+++YA+C  ++ AR++F+ +    VVS++A+
Sbjct: 373 SANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAM 432

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           I AY  +    EA   F  ++  N++P  VT ++ L++C  LG+LD+G  I+    K  L
Sbjct: 433 IGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADL 492

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
             +V +  ALI M+AK G ++ A  +FD M  +D   W+AMI  Y+ HG   +++ +F+ 
Sbjct: 493 VSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDR 552

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M+K +  P+ +TF+G+L ACS  G VDEG  +F  + +  GIVP +K YGCMVDLLGRAG
Sbjct: 553 MLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAG 612

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSN 436
            LDEA   I  +P+K T  +W +LL +C  H NL +A++  ER   +D   G  YV LS+
Sbjct: 613 ELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSH 672

Query: 437 LCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDE 496
           + A AG WE+V  +RK+M+ RG+ K  GC+ IEV   V  F   D  H    ++   L  
Sbjct: 673 MYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDRSHPLVGEIYAELAR 732

Query: 497 LVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLR 556
           L+  +K  GY+P T  V H D+ +++KE A+ YHSEKLAI +G+L+ P GT IR+ KNLR
Sbjct: 733 LMNAIKREGYIPITQNVLH-DVGEQQKEEAISYHSEKLAIAYGVLSLPSGTPIRIYKNLR 791

Query: 557 VC 558
           VC
Sbjct: 792 VC 793



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/428 (26%), Positives = 202/428 (47%), Gaps = 23/428 (5%)

Query: 25  LSLLPRCTSFRGL---KQIHAVTIKTHLQ---NDLNVLTKLINFCTQNPTTSSMEHAHLL 78
           + L  RCT  R     KQ+    I+   Q    +LN L KL + C       ++  A  +
Sbjct: 61  VKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSIC------GNVTEARQI 114

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
           FD +    +V +N +  GY++      A  LF ++++ GL P   +F S+L AC+     
Sbjct: 115 FDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSS--PA 172

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
            L  GK++H   +  G  S+  + T L+++Y +   ++ AR++F+ +    V ++N ++ 
Sbjct: 173 GLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVG 232

Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
            YA+S    +A  LF  +Q+  LKP  ++ LS L  C    +L  GK +H      GL  
Sbjct: 233 GYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVD 292

Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
            ++V T+LI M+  CG ++ A  VFDNM  +D  +W+ MI  YA +G    +  +F  M 
Sbjct: 293 DIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQ 352

Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
           +  + PD IT++ ++ AC+ +  ++      +S  D  G    +     +V +  + G +
Sbjct: 353 EEGIQPDRITYMHIMNACAISANLNHA-REIHSQVDIAGFGTDLLVSTALVHMYAKCGAI 411

Query: 379 DEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH----GGDYVIL 434
            +A +  D +P +   + W  ++ +   +   G   +  E    +  S+    G  Y+ L
Sbjct: 412 KDARQVFDAMP-RRDVVSWSAMIGAYVEN---GYGTEAFETFHLMKRSNIEPDGVTYINL 467

Query: 435 SNLCARAG 442
            N C   G
Sbjct: 468 LNACGHLG 475



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 149/290 (51%), Gaps = 4/290 (1%)

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           D  ++  L + C  +   AL  GKQ+    I+ G   N+Y   TLI LY+ C +V  AR+
Sbjct: 56  DSRTYVKLFQRCTELRDAAL--GKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQ 113

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
           IF+++    VV++NA+I  YA+     EA +LFR++ +  L+P+ +T LS L +C+    
Sbjct: 114 IFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAG 173

Query: 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVA 300
           L+ GK +H  +   G     ++ TAL+ M+ K G +DDA  VFD +  +D   ++ M+  
Sbjct: 174 LNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGG 233

Query: 301 YATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP 360
           YA  G   K+  +F  M +  + P++I+FL +L  C     +  G    ++     G+V 
Sbjct: 234 YAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWG-KAVHAQCMNAGLVD 292

Query: 361 GIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
            I+    ++ +    G ++ A R  D + ++   + W  ++   + + N+
Sbjct: 293 DIRVATSLIRMYTTCGSIEGARRVFDNMKVRDV-VSWTVMIEGYAENGNI 341


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/545 (37%), Positives = 326/545 (59%), Gaps = 13/545 (2%)

Query: 19  TNTPNALSLLPRC---TSFRGLKQIHAVTIKTHLQNDLNVLTKLIN--FCTQNPTTSSME 73
            N    L+LLP C   +    L+ +H  +++   Q       +LIN  F        S+ 
Sbjct: 414 VNEVTILNLLPACLEESELLSLRALHGYSLRHSFQ-----YKELINNAFIAAYAKCGSLV 468

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
            A  +F  +    +  +N +  G++++  PI+A+  + E+   G+LPDD+S  SLL AC 
Sbjct: 469 FAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACG 528

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
            +G   L+ GK++H F ++ GL  N +V  +L++LY  CS     R  FE + +   V +
Sbjct: 529 RLGL--LQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCW 586

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           NA+++ Y+++  PNEALSLFR++    L+P ++ + S L +C+ L +L LGK +H +  K
Sbjct: 587 NAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALK 646

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
             L +   V  +L+DM+AK G L  +  +F+ ++GK+  +W+ MI  +  HGQG+K++ +
Sbjct: 647 NSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVEL 706

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           FE+M ++   PD  TFLG+L AC H GLV EG NY   M+  Y + P ++HY C++D+LG
Sbjct: 707 FEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLG 766

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI 433
           RAGRL+EA  FI+E+P +    +W +LLSS  ++ +L + ++  E++  L+ +    Y++
Sbjct: 767 RAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYIL 826

Query: 434 LSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKA 493
           LSNL A AG+W+ V  +R+ MKD  + K  GCS IE+   V  F +G+  +  S +++K 
Sbjct: 827 LSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKM 886

Query: 494 LDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVK 553
            + L K++  +GY PD S V H ++E+ EK   L+ HSEK+AI FG LNT  GTT+R+ K
Sbjct: 887 WNRLEKQIVEIGYTPDCSCVLH-ELEEVEKRKILKGHSEKVAICFGFLNTKEGTTLRISK 945

Query: 554 NLRVC 558
           NLR+C
Sbjct: 946 NLRIC 950



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 98/312 (31%), Positives = 164/312 (52%), Gaps = 9/312 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K +H + +K  L  DL V   +I    +      ++ A  LFD++PE +++ +N++ RG+
Sbjct: 230 KSVHGMAVKMGLIMDLFVGNAMIALYGK---CGFLDEAVELFDKMPEQNLISWNSLIRGF 286

Query: 98  SRSKTPIRAIFLFVELLNSG--LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155
           S +   + A   F  LL SG  L+PD  +  +LL  C+  G   ++ G  +H  A+KLGL
Sbjct: 287 SENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCS--GEGNVDVGMVIHGMAVKLGL 344

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
              L VC  LI++Y++C  +  A  +F  I    VVS+N++I AY+R     E   L R+
Sbjct: 345 VHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRK 404

Query: 216 L--QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273
           +  +E  ++  +VT+L+ L +C     L   + +H Y  ++       +N A I  +AKC
Sbjct: 405 MWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKC 464

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
           G L  A  VF  M+ K   +W+A+I  +A +G   K++  + EM +  + PD+ + + LL
Sbjct: 465 GSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLL 524

Query: 334 YACSHTGLVDEG 345
            AC   GL+  G
Sbjct: 525 LACGRLGLLQYG 536



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 168/319 (52%), Gaps = 14/319 (4%)

Query: 27  LLPRCTSFR----GLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           LL +C  ++    G K    + + +    D  + T+LI   T          + L+FDR+
Sbjct: 113 LLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLI---TMYSICGYPLESRLVFDRL 169

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN-SGLLPDDYSFPSLLKACACVGAEALE 141
              ++  +N +  GY R++    AI  F+EL++ +   PD+++FP L+KAC   G   + 
Sbjct: 170 LNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKAC--TGKCDIH 227

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            GK +H  A+K+GL  +L+V   +I LY +C  ++ A  +F+ + E  ++S+N++I  ++
Sbjct: 228 LGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFS 287

Query: 202 RSSRPNEALSLFRELQER--NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
            +    EA   FR L E    L P   TM++ L  C+  G++D+G  IH    K GL   
Sbjct: 288 ENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHE 347

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           + V  ALIDM++KCG L +A  +F  +  K   +W++MI AY+  G   ++  +  +M  
Sbjct: 348 LMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWM 407

Query: 320 AQ--VSPDEITFLGLLYAC 336
            +  +  +E+T L LL AC
Sbjct: 408 EEELMEVNEVTILNLLPAC 426



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 136/276 (49%), Gaps = 6/276 (2%)

Query: 134 CVGAEALEEGKQL-HCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
           C   + +E G++L     +    + +  + T LI +Y+ C     +R +F+ +    +  
Sbjct: 117 CGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQ 176

Query: 193 YNAIITAYARSSRPNEALSLFREL-QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           +NA+++ Y R+   +EA+  F EL      +P + T    + +C     + LGK +H   
Sbjct: 177 WNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMA 236

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            K GL   + V  A+I ++ KCG LD+AV +FD M  ++  +W+++I  ++ +G   ++ 
Sbjct: 237 VKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAY 296

Query: 312 LMFEEMMKAQ--VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369
             F  ++++   + PD  T + LL  CS  G VD G    + M  K G+V  +     ++
Sbjct: 297 RAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGM-VIHGMAVKLGLVHELMVCNALI 355

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS 405
           D+  + G L EA     ++  KS  + W +++ + S
Sbjct: 356 DMYSKCGCLSEAAILFRKIENKSV-VSWNSMIGAYS 390



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 103/237 (43%), Gaps = 12/237 (5%)

Query: 197 ITAYARSSRPNEALSLFRELQERN----LKPTDVTMLSALSSCALLGSLDLGKWIHEYI- 251
           I+    +   N AL   +   + N    L      M   L  C    ++++G+ + E + 
Sbjct: 75  ISKLCEAGDLNGALDFLQRAWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKLDEMLC 134

Query: 252 --KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
              ++  D    +NT LI M++ CG   ++  VFD +  K+   W+A++  Y  +    +
Sbjct: 135 VSSQFSGD--FVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDE 192

Query: 310 SILMFEEMMKA-QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
           +I  F E++   +  PD  TF  L+ AC+    +  G    + M  K G++  +     M
Sbjct: 193 AIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLG-KSVHGMAVKMGLIMDLFVGNAM 251

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
           + L G+ G LDEA    D++P +   I W +L+   S +     A +    + E  D
Sbjct: 252 IALYGKCGFLDEAVELFDKMP-EQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGD 307


>gi|147810456|emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
          Length = 516

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/463 (41%), Positives = 290/463 (62%), Gaps = 5/463 (1%)

Query: 8   PITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNP 67
           P T S      +     +S+  +C S + L+Q+HA  I+T L+ +L V+ K+I FC  + 
Sbjct: 38  PTTLSENEGFDSREERVMSVFKQCESMKHLEQLHAHVIQTGLEQNLFVMGKIIVFCAVSE 97

Query: 68  TTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPS 127
              SM++A  +F +I  PD  L+NTM RG  R++ P +A   +  +   G + D++++  
Sbjct: 98  C-GSMDYALRVFGKIENPDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSF 156

Query: 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE 187
           L+K C  +G++ L  GKQ+HC  +K GL  +++V  TL+++Y    D+EAA  +FE + +
Sbjct: 157 LVKVCGQLGSDLL--GKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPK 214

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
             +V++N II       R  EA+ LF  + +  LKP D T +  LS+CA LG LD+G+ +
Sbjct: 215 SYLVAWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGRRV 274

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQG 307
           H  I   GL   V V+ +LIDM+AKCG ++ A  +F+ M G++  +W+ MI+  A HG G
Sbjct: 275 HSCIDHTGLGNVVSVSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMHGHG 334

Query: 308 HKSILMFEEMMKAQV-SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG 366
            +++ +F +M++ ++ +P+E+TFLG+L ACSH G+V+EG  YF  MR  Y I P IKHYG
Sbjct: 335 DEALELFSKMLEEKLATPNEVTFLGVLCACSHGGMVEEGRRYFDIMRRDYNIQPTIKHYG 394

Query: 367 CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
            MVD+LGRAG ++EAYR I  +PI+S  I+WRTLL++C  H NL LA+QV + + EL+  
Sbjct: 395 SMVDILGRAGLVEEAYRLIKSMPIESNSIVWRTLLAACRVHGNLELAEQVRQXLLELEPD 454

Query: 427 HGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLK-VPGCSSI 468
           H  DYV+L+N+ A AG+W  V  +RK M  RGV K  PG S I
Sbjct: 455 HSSDYVLLANMYASAGQWNKVXRVRKSMHIRGVQKPKPGNSYI 497


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/500 (39%), Positives = 304/500 (60%), Gaps = 6/500 (1%)

Query: 59  LINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118
           LIN   Q+     ++ A  +FD + E ++  +N M  G  + +     +FLF E+   G 
Sbjct: 29  LINGHVQH---GDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGF 85

Query: 119 LPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAA 178
           LPD+++  S+L+ CA  G  A   GKQ+H + +K G   NL V ++L ++Y +   +   
Sbjct: 86  LPDEFTLGSVLRGCA--GLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEG 143

Query: 179 RRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL 238
            ++ + +    VV++N +I   A++      L L+  ++   L+P  +T++S +SS A L
Sbjct: 144 EKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAEL 203

Query: 239 GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMI 298
            +L  G+ IH    K G +  V V ++LI M++KCG L+D++    +    D+  WS+MI
Sbjct: 204 ATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMI 263

Query: 299 VAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGI 358
            AY  HG+G +++ +FE+M +  +  +++TFL LLYACSH GL ++G  +F  M +KYG+
Sbjct: 264 AAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGL 323

Query: 359 VPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
            P ++HY C+VDLLGR+G LDEA   I  +P+++  ++W+TLLS+C  H N  +A +  E
Sbjct: 324 KPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAE 383

Query: 419 RIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFF 478
            I  L+      YV+LSN+ A A RW+DV  +R  M+DR V K PG S +EV N V +F 
Sbjct: 384 EILRLNPQDSATYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQFS 443

Query: 479 SGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITF 538
            GD  H  S ++   L EL++E+K+ GYVPDT+ V H D + EEKE +L  HSEKLAI F
Sbjct: 444 MGDKSHPMSEEIDLYLKELMEEMKLRGYVPDTATVFH-DTDSEEKENSLVNHSEKLAIAF 502

Query: 539 GLLNTPPGTTIRVVKNLRVC 558
           GL+N PPG+ IRV+KNLR+C
Sbjct: 503 GLMNIPPGSPIRVMKNLRIC 522



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 147/308 (47%), Gaps = 9/308 (2%)

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           N+     LIN + +  D+++A ++F+ + E  V ++NA+++   +       L LFRE+ 
Sbjct: 22  NIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMH 81

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           E    P + T+ S L  CA L +   GK +H Y+ KYG +  + V ++L  M+ K G L 
Sbjct: 82  ELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLG 141

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           +   V   M  ++  AW+ +I   A +G     + ++  M  + + PD+IT + ++ + +
Sbjct: 142 EGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSA 201

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR-FID-ELPIKSTPI 395
               + +G    ++   K G    +     ++ +  + G L+++ +  +D E P     +
Sbjct: 202 ELATLFQG-QQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHP---DSV 257

Query: 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL--CARAGRWEDVDYLRKL 453
           LW +++++   H     A  + E++ E +   G D   LS L  C+  G  E      KL
Sbjct: 258 LWSSMIAAYGFHGRGEEAVHLFEQM-EQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKL 316

Query: 454 MKDRGVLK 461
           M ++  LK
Sbjct: 317 MVEKYGLK 324


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/563 (36%), Positives = 316/563 (56%), Gaps = 71/563 (12%)

Query: 27  LLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPD 86
           LL   TS   LKQ+HA  +KT+       L+++ + C  N   SS  +A L+F  +   +
Sbjct: 21  LLHNFTSPFELKQLHAHLLKTNSPLSSLPLSRVASVCAFN---SSFSYAKLIFQLLDASE 77

Query: 87  IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQL 146
           +  +NT  R ++   +P  AI LF  L    + PD Y+   +LKAC+ +    +  GK +
Sbjct: 78  VTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRL--LDVRNGKIV 135

Query: 147 HCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRP 206
           H +  KLGL SN+++   +++LYA C ++  AR++F+ + +  V+++N +I    +    
Sbjct: 136 HGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDA 195

Query: 207 NEALSLFRELQERNLK-------------------------------PTDVTMLSALSSC 235
             A  LF E+ ERN++                               P +VT+++ L +C
Sbjct: 196 EGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVAC 255

Query: 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWS 295
           A +G+L LG+ IH++  + G +K ++V   LIDM+ KCG L+DA  +FDNM  +   +WS
Sbjct: 256 ADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWS 315

Query: 296 AMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355
           AMI   A HG+   ++ +F +M+   V P+ +TF+G+L+ACSH G+V++G  YF SM   
Sbjct: 316 AMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRD 375

Query: 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQ 415
           YGIVP I+HYGCMVDL  RAG L EA+ FI  +PI    ++W  LL  C  H N+ LA++
Sbjct: 376 YGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLAEE 435

Query: 416 VIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVR 475
               + +LD  + G YV+LSN+ A AGRWEDV  +RKLM+DRG                 
Sbjct: 436 ATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRG----------------- 478

Query: 476 EFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLA 535
                              ++L++ +K+ GYVP+TS+V   DME+++KE  L  HSEKLA
Sbjct: 479 -----------------TWEKLLQRMKLKGYVPNTSVVLL-DMEEDQKEKFLYRHSEKLA 520

Query: 536 ITFGLLNTPPGTTIRVVKNLRVC 558
           + FGL+ T PGT IR++KNLRVC
Sbjct: 521 VVFGLIKTTPGTVIRIMKNLRVC 543


>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 568

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/531 (37%), Positives = 320/531 (60%), Gaps = 13/531 (2%)

Query: 32  TSFRGLKQIHAVTIK-THLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP-DIVL 89
           ++ + +  +HA  IK     N L++ T ++     +    +  +A  +  R P P D   
Sbjct: 7   SNMKSVYNLHATLIKNAQHDNPLSLRTFILRCANSSSPPDTARYAAAVLLRFPIPGDPFP 66

Query: 90  FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCF 149
           +N + R +     P  A+ LF  +  + +  D ++FP +LK+              +H  
Sbjct: 67  YNAVIR-HVALHAPSLALALFSHMHRTNVPFDHFTFPLILKSSKL-------NPHCIHTL 118

Query: 150 AIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEA 209
            +KLG +SN+YV   LIN Y     + A+ ++F+ +    ++S++++I+ +A+   P+EA
Sbjct: 119 VLKLGFHSNIYVQNALINSYGTSGSLHASLKLFDEMPRRDLISWSSLISCFAKRGLPDEA 178

Query: 210 LSLFRELQ--ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267
           L+LF+++Q  E ++ P  V MLS +S+ + LG+L+LG W+H +I + G++  V + +ALI
Sbjct: 179 LTLFQQMQLKESDILPDGVVMLSVISAVSSLGALELGIWVHAFISRIGVNLTVSLGSALI 238

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
           DM+++CG +D +V VFD M  ++   W+A+I   A HG+G +++  F +M+++ + PD I
Sbjct: 239 DMYSRCGDIDRSVKVFDEMPHRNVVTWTALINGLAVHGRGREALEAFYDMVESGLKPDRI 298

Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
            F+G+L ACSH GLV+EG   F SM  +YGI P ++HYGCMVDLLGRAG + EA+ F++ 
Sbjct: 299 AFMGVLVACSHGGLVEEGRRVFSSMWSEYGIEPALEHYGCMVDLLGRAGMVLEAFDFVEG 358

Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447
           + ++   ++WRTLL +C +HN L LA++  ERI ELD  H GDYV+LSN     G W   
Sbjct: 359 MRVRPNSVIWRTLLGACVNHNLLVLAEKAKERIKELDPHHDGDYVLLSNAYGGVGNWVKK 418

Query: 448 DYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYV 507
           + +R  M++  ++K PG S + ++ V  EF SGD  H    ++ + L  ++  +K+ GY 
Sbjct: 419 EGVRNSMRESKIVKEPGLSLVHIDQVAHEFVSGDNSHPQWEEITRFLGSVIDTVKLGGYT 478

Query: 508 PDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           P T  V H D+++EEKE +L YHSEKLA+ F LL      TIRV+KNLR+C
Sbjct: 479 PSTKNVLH-DIQEEEKEHSLGYHSEKLAVAFVLLYHRDRKTIRVIKNLRIC 528


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 218/570 (38%), Positives = 330/570 (57%), Gaps = 45/570 (7%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP 85
           SL+  C S   +KQ HA  I T  Q  L V+    N   +N   +S+ +AH LFD+IP+P
Sbjct: 184 SLIDLCKSINQIKQTHANLITT-AQITLPVIA---NKFLKNVALASLTYAHKLFDQIPQP 239

Query: 86  DIVLFNTMARGYSRS-KTPIRAIFLFVELL-NSGLLPDDYSFPSLLKACACVGAEALEEG 143
           D+ ++NTM + +S S  + + +I +F  L+ +SG  P+ YSF     AC       + EG
Sbjct: 240 DLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGACG--NGMCVREG 297

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN------------------- 184
           +Q+   A+K+GL+ N++V   LI ++ +   VE AR +F++                   
Sbjct: 298 EQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGS 357

Query: 185 ------------ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232
                       + E  VVS++ II  Y +     EAL  F ++ +  +KP + TM+SAL
Sbjct: 358 GNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSAL 417

Query: 233 SSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVF-DNMSGKDT 291
           ++C+ L +LD GKWIH YI++  +    ++  +LIDM+AKCG +D A SVF ++   +  
Sbjct: 418 AACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKV 477

Query: 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYS 351
             W+AMI  +A HG+  ++I +FE+M   +VSP+++TF+ LL ACSH  +V EG +YF  
Sbjct: 478 WPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFEL 537

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
           M   YGI P I+HYGCMVDLL R+G L ++   I  +P+     +W  LL++C  + ++ 
Sbjct: 538 MASDYGINPEIEHYGCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWGALLNACRIYKDME 597

Query: 412 LAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLR---KLMKDRGVLKVPGCSSI 468
              ++   I E+D +H G  V+L N+ + +GRW +   +R   ++  DR   K+PG SSI
Sbjct: 598 RGYRIGRIIKEIDPNHIGCNVLLGNIYSTSGRWNEARMVREKNEINSDRK--KIPGFSSI 655

Query: 469 EVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALR 528
           E+N V  EF  GD  H  S ++   LDE++ +LK+ GYVP+   V     ++E+KE AL 
Sbjct: 656 ELNGVFHEFLVGDRSHPQSREIYSFLDEMISKLKIAGYVPELGEVLLDFDDEEDKETALS 715

Query: 529 YHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            HSEKLAI FGL+NT PGT IR+VKNLRVC
Sbjct: 716 VHSEKLAIAFGLMNTAPGTPIRIVKNLRVC 745


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/520 (40%), Positives = 308/520 (59%), Gaps = 39/520 (7%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           ++ A  LF+R+P  + + +  M  GY+R+    +A+     L   G+LP   S  S   A
Sbjct: 368 VDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFA 427

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE-------- 183
           C+ +  EALE GKQ+H  A+K G   N YVC  LI LY +   + + R+IF+        
Sbjct: 428 CSNI--EALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTV 485

Query: 184 -----------------------NISEPCVVSYNAIITAYARSSRPNEALSLFRE-LQER 219
                                  N+  P VVS+  II+A A++ + NEA+ +FR  L ER
Sbjct: 486 SYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHER 545

Query: 220 NL-KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
            L  P  +T+L  LS    LG+  LG+ IH    K G+D  + V  AL+ M+ KC   D 
Sbjct: 546 ELPNPPILTILLGLSGN--LGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSAD- 602

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           ++ VFD+M  +D   W+ +I  YA HG G ++I M++ M+ A V P+E+TF+GLL+ACSH
Sbjct: 603 SLKVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSH 662

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
           +GLVDEG  +F SM   YG+ P ++HY CMVDLLGRAG +  A  FI ++PI+   ++W 
Sbjct: 663 SGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWS 722

Query: 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458
            LL +C  H N+ + ++  E++F ++ S+ G+YV+LSN+ +  G W++V  +RKLMK+RG
Sbjct: 723 ALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERG 782

Query: 459 VLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDM 518
           V K PGCS +++ N +  F +GD  H    ++   L EL   LK  GYVPDT  V H D+
Sbjct: 783 VNKDPGCSWMQIKNKMHSFVTGDEEHEQIQNIYATLWELYTLLKATGYVPDTDFVLH-DI 841

Query: 519 EDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           ++E+KE +L YHSEKLA+ +GLL TP G  I+++KNLR+C
Sbjct: 842 DEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRIC 881



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/411 (22%), Positives = 196/411 (47%), Gaps = 25/411 (6%)

Query: 57  TKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS 116
           T L  +C     +  ME A  LF+R+PE + V +  M  GY   +   RA  +F  +L  
Sbjct: 162 TMLTGYCH----SQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCE 217

Query: 117 GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA-ECSDV 175
           G+ P+  +  S+L A   +G   + E   +H    K G   ++ V T ++N Y  + + +
Sbjct: 218 GMTPEQPNLVSVLSAVRHLGKPGILE--SIHVLVHKTGFERDVVVGTAILNGYTKDVNML 275

Query: 176 EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSC 235
           ++A + FE ++     +++ II A +++ R ++A ++++    +++ P+  +ML+ L   
Sbjct: 276 DSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSV-PSRTSMLTGL--- 331

Query: 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWS 295
           A  G +D  K + + I +  +  +     A+I  + +   +D+A  +F+ M  ++T +W+
Sbjct: 332 ARYGRIDDAKILFDQIHEPNVVSW----NAMITGYMQNEMVDEAEDLFNRMPFRNTISWA 387

Query: 296 AMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355
            MI  YA +G+  ++++  + + +  + P   +     +ACS+   ++ G    +S+  K
Sbjct: 388 GMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETG-KQVHSLAVK 446

Query: 356 YGIVPGIKHYGC--MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413
            G       Y C  ++ L G+   +    +  D + +K T + + + +S+   +N    A
Sbjct: 447 AGC--QFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDT-VSYNSFMSALVQNNLFDEA 503

Query: 414 KQVIERIFELDDSHGGDYVILSNLCARAGRW-EDVDYLRKLMKDRGVLKVP 463
           + V   +   D      +  + + CA+A +  E V+  R ++ +R +   P
Sbjct: 504 RDVFNNMPSPDVV---SWTTIISACAQADQGNEAVEIFRSMLHERELPNPP 551



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 76/363 (20%), Positives = 143/363 (39%), Gaps = 52/363 (14%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +  A  +FD +P  DI+ +N+M   Y  +  P     L   +    L           +A
Sbjct: 49  LHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLRTGTILLSGYARA 108

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
                A  + +G         +G+  N      ++  Y +  D+  AR++F+ +    V 
Sbjct: 109 GRVRDARRVFDG---------MGVR-NTVAWNAMVTCYVQNGDITLARKLFDAMPSRDVS 158

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERN------------------------------- 220
           S+N ++T Y  S    EA +LF  + ERN                               
Sbjct: 159 SWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEG 218

Query: 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK-CGRLDDA 279
           + P    ++S LS+   LG   + + IH  + K G ++ V V TA+++ + K    LD A
Sbjct: 219 MTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSA 278

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
           V  F+ M+ ++   WS +I A +  G+   +  +++      V        GL    +  
Sbjct: 279 VKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGL----ARY 334

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRT 399
           G +D+    F  + +     P +  +  M+    +   +DEA    + +P ++T I W  
Sbjct: 335 GRIDDAKILFDQIHE-----PNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNT-ISWAG 388

Query: 400 LLS 402
           +++
Sbjct: 389 MIA 391



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 89/189 (47%), Gaps = 13/189 (6%)

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
           P   + +A I    R  R +EA  +F  +  R++   +  + +  ++    G  D G+ +
Sbjct: 31  PGTSAQSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNN----GMPDAGRSL 86

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQG 307
            + I    L    +  T L+  +A+ GR+ DA  VFD M  ++T AW+AM+  Y  +G  
Sbjct: 87  ADAISGGNL----RTGTILLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNG-- 140

Query: 308 HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG- 366
              I +  ++  A  S D  ++  +L    H+ L++E  N F  M ++ G+   +   G 
Sbjct: 141 --DITLARKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGY 198

Query: 367 CMVDLLGRA 375
            +++  GRA
Sbjct: 199 VLIEQHGRA 207


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/484 (39%), Positives = 290/484 (59%), Gaps = 3/484 (0%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +FD +PE ++  +N M  G  + +     + LF  +   G LPD+++  S+L+ CA 
Sbjct: 137 ARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCA- 195

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
            G  AL  G+Q+H +  K G   NL V ++L ++Y +C  +    R+   +    VV++N
Sbjct: 196 -GLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWN 254

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
            +I   A++  P E L  +  ++    +P  +T +S +SSC+ L +L  G+ IH  + K 
Sbjct: 255 TLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKA 314

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
           G    V V ++LI M+++CG L+ ++ VF      D   WS+MI AY  HG+G ++I +F
Sbjct: 315 GASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLF 374

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
            +M + ++  +++TFL LLYACSH GL ++G  +F  M +KYG+ P ++HY CMVDLLGR
Sbjct: 375 NQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGR 434

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
            G ++EA   I  +P+K+  I W+TLLS+C  H    +A+++ E +F LD      YV+L
Sbjct: 435 YGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVPYVLL 494

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
           SN+ A   RW+DV  +RK M+DR + K PG S +EV N + +F  GD  H  S ++   L
Sbjct: 495 SNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEIASYL 554

Query: 495 DELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
            EL  E+K  GYVPD   V H DM+ E+KE +L +HSEKLAI F LL TP GT IRV+KN
Sbjct: 555 RELTSEMKKRGYVPDIDSVLH-DMDVEDKEYSLVHHSEKLAIAFALLYTPVGTPIRVIKN 613

Query: 555 LRVC 558
           LRVC
Sbjct: 614 LRVC 617



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 153/299 (51%), Gaps = 10/299 (3%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  C   R L   +Q+H    K   + +L V++ L +   +     S+     L   +
Sbjct: 189 SVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMK---CGSLGEGERLIRAM 245

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           P  ++V +NT+  G +++  P   +  +  +  +G  PD  +F S++ +C+ +    L +
Sbjct: 246 PSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELA--TLGQ 303

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G+Q+H   IK G +  + V ++LI++Y+ C  +E + ++F       VV ++++I AY  
Sbjct: 304 GQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGF 363

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEYIKKYGLDKYVK 261
             R  EA+ LF ++++  L+  DVT LS L +C+  G  + G K+    ++KYG+   ++
Sbjct: 364 HGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLE 423

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
             T ++D+  + G +++A ++  +M  K D   W  ++ A   H +   +  + EE+ +
Sbjct: 424 HYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFR 482



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 149/340 (43%), Gaps = 39/340 (11%)

Query: 123 YSFPSLLKAC--ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAA-- 178
           +S PSL      +C+   +L  GKQLH   I  G +S+ ++   L+NLY++C  ++ A  
Sbjct: 49  WSEPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAIT 108

Query: 179 -----------------------------RRIFENISEPCVVSYNAIITAYARSSRPNEA 209
                                        R++F+ + E  V ++NA++    +     E 
Sbjct: 109 LFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEG 168

Query: 210 LSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDM 269
           L LF  + E    P +  + S L  CA L +L  G+ +H Y++K G +  + V ++L  M
Sbjct: 169 LGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHM 228

Query: 270 HAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITF 329
           + KCG L +   +   M  ++  AW+ +I   A +G   + +  +  M  A   PD+ITF
Sbjct: 229 YMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITF 288

Query: 330 LGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389
           + ++ +CS    + +G    ++   K G    +     ++ +  R G L+ + +   E  
Sbjct: 289 VSVISSCSELATLGQG-QQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECE 347

Query: 390 IKSTPILWRTLLSSCSSHNN----LGLAKQVIERIFELDD 425
                + W +++++   H      + L  Q+ +   E +D
Sbjct: 348 -NGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEAND 386



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 94/203 (46%), Gaps = 13/203 (6%)

Query: 5   PSPPITQSPPPKLCTNTPNAL---SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTK 58
           P   + Q    K+    P+ +   S++  C+    L   +QIHA  IK      ++V++ 
Sbjct: 266 PEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISS 325

Query: 59  LINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118
           LI+  ++      +E++  +F      D+V +++M   Y      + AI LF ++    L
Sbjct: 326 LISMYSR---CGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKL 382

Query: 119 LPDDYSFPSLLKACACVGAEALEEGKQLHCFAI-KLGLNSNLYVCTTLINLYAECSDVEA 177
             +D +F SLL AC+  G +  E+G +     + K G+   L   T +++L      VE 
Sbjct: 383 EANDVTFLSLLYACSHCGLK--EKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEE 440

Query: 178 ARRIFENIS-EPCVVSYNAIITA 199
           A  +  ++  +  V+++  +++A
Sbjct: 441 AEALIRSMPVKADVITWKTLLSA 463


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/523 (38%), Positives = 318/523 (60%), Gaps = 6/523 (1%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           L+QIHA  I T L    +++TKL++F       S + +   LF  IP+PD  LF+++   
Sbjct: 35  LQQIHARIIITGLGRTRSLITKLLSFAY--AAASPISYTRRLFFSIPKPDTFLFHSLITL 92

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
            S+   P  ++  +  +L + +   +Y+F +++K+ A + A ++  G+ +HC     G  
Sbjct: 93  TSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSI--GETIHCHVYICGYG 150

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            + YV   L++ YA+   V  AR++F+ + E  VV++N++I+ Y ++    EA+ LF  +
Sbjct: 151 LDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLM 210

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           Q+  +KP   T +S LS+CA +G++ LG W+HEYI +   D  V + TAL++M+++CG +
Sbjct: 211 QDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNV 270

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
             A  VFD+M  K+  AW+AMI  Y  HG G ++I +F EM      P+ +TF+ +L AC
Sbjct: 271 SKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSAC 330

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI-DELPIKSTPI 395
           +H GLVDEG   F +M+ +YG+VP ++H  CMVD+LGRAG L+EAY+FI +  P +  P 
Sbjct: 331 AHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPA 390

Query: 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455
           +W  +L +C  H N  L  +V E +  ++  + G YV+LSN+ A AGR + V+ +R +M 
Sbjct: 391 VWTAMLGACKMHKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAGRMDRVEKIRNIMI 450

Query: 456 DRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHH 515
              + K  G S+I+V++ V  F  GD  H  +  +   LDEL+   +  GY+P +  V H
Sbjct: 451 RNRLKKEVGYSTIDVDHKVYLFSMGDKSHPKTNQIYLYLDELMSRCREAGYIPASESVMH 510

Query: 516 GDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            ++E+EE+E ALRYHSEKLAI FGLL T  G  IR+VKNLR+C
Sbjct: 511 -EVEEEEREYALRYHSEKLAIAFGLLKTGSGVAIRIVKNLRMC 552


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/568 (36%), Positives = 318/568 (55%), Gaps = 37/568 (6%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           P+ L  + + ++F    +IH +  K    +D  + T LI       +   +  A LLFD+
Sbjct: 125 PSLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLI---AMYASCRRIMDARLLFDK 181

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +  PD V +N +  GY ++     A+ LF ++ +S + PD     ++L AC   G   L 
Sbjct: 182 MCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGN--LS 239

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS--------------- 186
            G+ +H F    G   + ++ T LIN+YA C  ++ AR+I++ +S               
Sbjct: 240 YGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYA 299

Query: 187 ----------------EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLS 230
                           E  +V ++A+I+ YA S +P EAL LF E+ ++   P  +TMLS
Sbjct: 300 KLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLS 359

Query: 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290
            +S+C+ +G+L    WIH Y+ + G  + + VN ALIDM+AKCG L  A  VF+NM  K+
Sbjct: 360 VISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKN 419

Query: 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350
             +WS+MI A+A HG    +I +F  M +  + P+ +TF+G+LYAC H GLV+EG   F 
Sbjct: 420 VISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFS 479

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
           SM +++GI P  +HYGCMVDL  RA  L +A   I+ +P     I+W +L+S+C  H   
Sbjct: 480 SMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEA 539

Query: 411 GLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEV 470
            L +   +R+ EL+  H G  V+LSN+ A+  RW DV  +RK M  +G+ K    S IE+
Sbjct: 540 ELGEFAAKRLLELEPDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEI 599

Query: 471 NNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYH 530
           NN V  F   D  H  S ++ + LDE+V +LK+VGY P TS +   D+E+E+K+  + +H
Sbjct: 600 NNQVHMFMMADRYHKQSDEIYEKLDEVVSKLKLVGYKPSTSGI-LIDLEEEDKKELVLWH 658

Query: 531 SEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           SEKLA+ +GL++    + IR+VKNLR+C
Sbjct: 659 SEKLAVCYGLISRRNESCIRIVKNLRIC 686



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 140/461 (30%), Positives = 244/461 (52%), Gaps = 43/461 (9%)

Query: 37  LKQIHAVTIKTHL--QNDLNVLTKL-INFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM 93
           LKQIHA  + ++   +N   +L+KL ++ CT + ++SS+ +A  +F +IP P     N +
Sbjct: 32  LKQIHAQILHSNTTPENTNTLLSKLALSICTLSSSSSSLHYALSVFSQIPNPHTHFSNQL 91

Query: 94  ARGYSRSKTPIRAIFLFVEL--LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAI 151
            R  SRS  P + IFL+  L  +N+  L D +SFPSLLKA + V   A   G ++H  A 
Sbjct: 92  LRHLSRSSFPEKTIFLYHNLRAINAFAL-DRFSFPSLLKAVSKVS--AFNHGLEIHGLAS 148

Query: 152 KLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALS 211
           KLG   + ++ T LI +YA C  +  AR +F+ +  P  V++N II  Y ++   ++AL 
Sbjct: 149 KLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALR 208

Query: 212 LFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271
           LF +++  ++KP  V + + LS+C   G+L  G+ IHE++K  G      + TALI+M+A
Sbjct: 209 LFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYA 268

Query: 272 KCGRLD-------------------------------DAVSVFDNMSGKDTQAWSAMIVA 300
            CG +D                               DA  +FD M  +D   WSAMI  
Sbjct: 269 NCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISG 328

Query: 301 YATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP 360
           YA   Q  +++ +F+EM++ +  PD+IT L ++ ACSH G + +  N+ ++  D+ G   
Sbjct: 329 YAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQA-NWIHTYVDRSGFGR 387

Query: 361 GIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
            +     ++D+  + G L +A    + +P K+  I W +++++ + H N   A ++  R+
Sbjct: 388 ALSVNNALIDMYAKCGNLVKAREVFENMPRKNV-ISWSSMINAFAMHGNADSAIKLFRRM 446

Query: 421 FELD-DSHGGDYVILSNLCARAGRWEDVDYL-RKLMKDRGV 459
            E++ + +G  ++ +   C  AG  E+ + L   ++ + G+
Sbjct: 447 KEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGI 487


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/592 (36%), Positives = 343/592 (57%), Gaps = 57/592 (9%)

Query: 20  NTPNALSLLPR---CTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFC-TQNPTTSSMEHA 75
           N+P A SL P+   C + R L QIHAV IK+    D     +++ FC T +     +++A
Sbjct: 13  NSP-ASSLFPQINTCRTIRDLSQIHAVFIKSGQIRDTLAAAEILRFCATSDLHHRDLDYA 71

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSK--TPIRAIFLFVELLNSGLL-PDDYSFPSLLKAC 132
           H +F+++P+ +   +NT+ RG+S S     + AI LF E+++   + P+ ++FPS+LKAC
Sbjct: 72  HKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKAC 131

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS------------------- 173
           A  G   +++GKQ+H  A+K G   + +V + L+ +Y  C                    
Sbjct: 132 AKTGK--IQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMV 189

Query: 174 --------------------------DVEAARRIFENISEPCVVSYNAIITAYARSSRPN 207
                                     D +AAR +F+ + +  VVS+N +I+ Y+++    
Sbjct: 190 MMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFK 249

Query: 208 EALSLFRELQE-RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
           +A+ +FRE+++  +++P  VT++S L + + LGSL+LG+W+H Y +  G+     + +AL
Sbjct: 250 DAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSAL 309

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           IDM++KCG ++ A+ VF+ +  ++   WSAMI  +A HGQ   +I  F +M +A V P +
Sbjct: 310 IDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSD 369

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
           + ++ LL ACSH GLV+EG  YF  M    G+ P I+HYGCMVDLLGR G LDEA  FI 
Sbjct: 370 VAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFIL 429

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWED 446
            +PIK   ++W+ LL +C  H N+ + K+V   + ++     G YV LSN+ A  G W +
Sbjct: 430 NMPIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSE 489

Query: 447 VDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGY 506
           V  +R  MK+  + K PGCS I+++ V+ EF   D  H  + ++   L E+  +L++ GY
Sbjct: 490 VSEMRLRMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEISDKLRLAGY 549

Query: 507 VPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            P T+ V   ++E+E+KE AL YHSEK+A  FGL++T PG  IR+VKNLR+C
Sbjct: 550 RPITTQVLL-NLEEEDKENALHYHSEKMATAFGLISTSPGKPIRIVKNLRIC 600


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/515 (40%), Positives = 306/515 (59%), Gaps = 45/515 (8%)

Query: 83  PEPDIVLFNTMARGYSRSKTP----IRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
           P  +  ++N + R  +RS+        A+ L++ +    +LPD ++FP LL++       
Sbjct: 20  PNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQSI-----N 74

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
               G+QLH   + LGL ++ +V T+LIN+Y+ C     AR+ F+ I++P + S+NAII 
Sbjct: 75  TPHRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIH 134

Query: 199 AYARS-----------SRPNE--------------------ALSLFRELQE---RNLKPT 224
           A A++             P +                    ALSLFR LQ      L+P 
Sbjct: 135 ANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPN 194

Query: 225 DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFD 284
           + TM S LS+CA LG+L  GKW+H YI K G+   V + T+LIDM+AKCG ++ A  +FD
Sbjct: 195 EFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFD 254

Query: 285 NMS-GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVD 343
           N+   KD  AWSAMI A++ HG   + + +F  M+   V P+ +TF+ +L AC H GLV 
Sbjct: 255 NLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVS 314

Query: 344 EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
           EG  YF  M ++YG+ P I+HYGCMVDL  RAGR+++A+  +  +P++   ++W  LL+ 
Sbjct: 315 EGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNG 374

Query: 404 CSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVP 463
              H ++   +  I ++ ELD ++   YV+LSN+ A+ GRW +V +LR LM+ RG+ K+P
Sbjct: 375 ARIHGDVETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLP 434

Query: 464 GCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEK 523
           GCS +EV+ V+REFF+GD  H    +L   LDE++K L+  GY  +T  V   D+++E K
Sbjct: 435 GCSLVEVDGVIREFFAGDNSHPELLNLYVMLDEIMKRLEKHGYERNTGEVLL-DLDEEGK 493

Query: 524 EIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           E AL  HSEKLAI +  L T PGTTIR+VKNLR+C
Sbjct: 494 EFALSLHSEKLAIAYCFLRTSPGTTIRIVKNLRIC 528



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 161/311 (51%), Gaps = 43/311 (13%)

Query: 32  TSFRGLKQIHAVTIKTHLQNDLNVLTKLIN---------FCTQN---------PTTSSME 73
           T  RG +Q+HA  +   L ND  V T LIN         F  Q          P+ +++ 
Sbjct: 75  TPHRG-RQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAII 133

Query: 74  HAHL----------LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN---SGLLP 120
           HA+           LFD++PE +++ ++ M  GY        A+ LF  L     S L P
Sbjct: 134 HANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRP 193

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           ++++  S+L ACA +G  AL+ GK +H +  K G+  ++ + T+LI++YA+C  +E A+ 
Sbjct: 194 NEFTMSSVLSACARLG--ALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKC 251

Query: 181 IFENIS-EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG 239
           IF+N+  E  V++++A+ITA++      E L LF  +    ++P  VT ++ L +C   G
Sbjct: 252 IFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGG 311

Query: 240 SLDLGKWIHEYIKK----YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAW 294
            +  G   +EY K+    YG+   ++    ++D++++ GR++DA +V  +M  + D   W
Sbjct: 312 LVSEG---NEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIW 368

Query: 295 SAMIVAYATHG 305
            A++     HG
Sbjct: 369 GALLNGARIHG 379



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 90/180 (50%), Gaps = 8/180 (4%)

Query: 23  NALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           + LS   R  + +  K +HA   KT ++ D+ + T LI+   +     S+E A  +FD +
Sbjct: 200 SVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAK---CGSIERAKCIFDNL 256

Query: 83  -PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
            PE D++ ++ M   +S        + LF  ++N G+ P+  +F ++L  CACV    + 
Sbjct: 257 GPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVL--CACVHGGLVS 314

Query: 142 EGKQLHCFAI-KLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS-EPCVVSYNAIITA 199
           EG +     + + G++  +     +++LY+    +E A  + +++  EP V+ + A++  
Sbjct: 315 EGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNG 374


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 220/591 (37%), Positives = 325/591 (54%), Gaps = 61/591 (10%)

Query: 22  PNALSL---LPRCTSF----RGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEH 74
           P+A+SL   LP C S     RG KQ+H   +++ L  D+ V   +++   +      ME 
Sbjct: 248 PDAVSLVNVLPACASVGAWSRG-KQVHGYALRSGLFEDVFVGNAVVDMYAK---CGMMEE 303

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSR----------------------------------- 99
           A+ +F+R+   D+V +N M  GYS+                                   
Sbjct: 304 ANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQ 363

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN--- 156
                 A+ +F ++L  G  P+  +  SLL  CA  G   L  GK+ HC AIK  LN   
Sbjct: 364 RGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGT--LLHGKETHCHAIKWILNLDE 421

Query: 157 ----SNLYVCTTLINLYAECSDVEAARRIFENI--SEPCVVSYNAIITAYARSSRPNEAL 210
                +L V   LI++Y++C   +AAR +F+ I   +  VV++  +I   A+    NEAL
Sbjct: 422 NDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEAL 481

Query: 211 SLFRE-LQERN-LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK-YVKVNTALI 267
            LF + LQ  N + P   T+  AL +CA LG+L  G+ IH Y+ +   +   + V   LI
Sbjct: 482 ELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLI 541

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
           DM++K G +D A  VFDNM  ++  +W++++  Y  HG+G +++ +F EM K  + PD +
Sbjct: 542 DMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGV 601

Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
           TF+ +LYACSH+G+VD+G NYF  M   +G+VPG +HY CMVDLL RAGRLDEA   I  
Sbjct: 602 TFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRG 661

Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447
           +P+K TP +W  LLS+C  + N+ L +    ++ EL+  + G Y +LSN+ A A  W+DV
Sbjct: 662 MPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDV 721

Query: 448 DYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYV 507
             +R LMK+ G+ K PGCS ++       FF+GD  H  S  +   L +L++ +K +GYV
Sbjct: 722 ARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYV 781

Query: 508 PDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           PD     H D++DEEK   L  HSEKLA+ +G+L T PG  IR+ KNLR C
Sbjct: 782 PDNRFALH-DVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRAC 831



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 136/248 (54%), Gaps = 6/248 (2%)

Query: 109 LFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINL 168
           L+  +   G  PD Y+FP +LKAC  +   +   G  +H      G   N++V   L+++
Sbjct: 132 LYRRMQRLGWRPDHYTFPFVLKACGEI--PSFRCGASVHAVVFASGFEWNVFVGNGLVSM 189

Query: 169 YAECSDVEAARRIFENISEPCV---VSYNAIITAYARSSRPNEALSLFRELQER-NLKPT 224
           Y  C   E AR++F+ + E  V   VS+N+I+ AY +      A+ +F  + E   ++P 
Sbjct: 190 YGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPD 249

Query: 225 DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFD 284
            V++++ L +CA +G+   GK +H Y  + GL + V V  A++DM+AKCG +++A  VF+
Sbjct: 250 AVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFE 309

Query: 285 NMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDE 344
            M  KD  +W+AM+  Y+  G+   ++ +FE++ + ++  + +T+  ++   +  GL  E
Sbjct: 310 RMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFE 369

Query: 345 GWNYFYSM 352
             + F  M
Sbjct: 370 ALDVFRQM 377



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 137/303 (45%), Gaps = 16/303 (5%)

Query: 163 TTLINLYAECSDVEAARRIFENI--SEPCVVSYNAIITAYARSSRPNEALSLFRELQERN 220
           T +I++Y   +    A  +   +  S   V  +N +I          + L L+R +Q   
Sbjct: 81  THIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLG 140

Query: 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV 280
            +P   T    L +C  + S   G  +H  +   G +  V V   L+ M+ +CG  ++A 
Sbjct: 141 WRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENAR 200

Query: 281 SVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMK-AQVSPDEITFLGLLYAC 336
            VFD M  +   D  +W++++ AY   G   +++ MFE M +   + PD ++ + +L AC
Sbjct: 201 QVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPAC 260

Query: 337 SHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
           +  G    G   + Y++R   G+   +     +VD+  + G ++EA +  + + +K   +
Sbjct: 261 ASVGAWSRGKQVHGYALRS--GLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDV-V 317

Query: 396 LWRTLLSSCSS----HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLR 451
            W  +++  S      + LGL +++ E   EL+        +++    R   +E +D  R
Sbjct: 318 SWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWS--AVIAGYAQRGLGFEALDVFR 375

Query: 452 KLM 454
           +++
Sbjct: 376 QML 378


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/557 (38%), Positives = 321/557 (57%), Gaps = 13/557 (2%)

Query: 8   PITQSPPPKLCTNTPNA---LSLLPRC--TSFRGL-KQIHAVTIKTHLQNDLNVLTKLIN 61
           PI      ++    PN    L +L  C  TS  G+ KQIH  T K    +++ V   L++
Sbjct: 69  PIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVS 128

Query: 62  FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPD 121
              +      + +A ++FD++ +  +V + ++  GY ++  P+ A+ +F E+    + PD
Sbjct: 129 MYAK---FGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPD 185

Query: 122 DYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRI 181
             +  S++ A   V  E L +GK +H    KLGL     +  +L  +YA+   VE AR  
Sbjct: 186 WIALVSVMTAYTNV--EDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFF 243

Query: 182 FENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSL 241
           F  + +P ++ +NA+I+ YA +    EA+ LFRE+  +N++   +TM SA+ + A +GSL
Sbjct: 244 FNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSL 303

Query: 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
           +L +W+  YI K        VNT LIDM+AKCG +  A  VFD ++ KD   WS MI+ Y
Sbjct: 304 ELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGY 363

Query: 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG 361
             HG G ++I ++ EM +A V P++ TF+GLL AC ++GLV EGW  F+ M D +GI P 
Sbjct: 364 GLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPD-HGIEPH 422

Query: 362 IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421
            +HY C+VDLLGRAG L++AY FI  +PIK    +W  LLS+C  H  + L +   E++F
Sbjct: 423 HQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLF 482

Query: 422 ELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGD 481
            LD  + G YV LSNL A A  W  V  +R +M  +G+ K  G SSIE+N  +  F  GD
Sbjct: 483 ILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGD 542

Query: 482 GVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLL 541
             H  S ++ + LD L K LK  GYVP    V H D+  EE E  L +HSE+LA+ +G++
Sbjct: 543 RSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLH-DLNHEEIEETLCHHSERLAVAYGII 601

Query: 542 NTPPGTTIRVVKNLRVC 558
           +T PGTT+R+ KNLR C
Sbjct: 602 STAPGTTLRITKNLRAC 618



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 116/434 (26%), Positives = 217/434 (50%), Gaps = 24/434 (5%)

Query: 35  RGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMA 94
           + L Q++   I + L     ++ K IN C        + +AH  F  + EPDI+L+N + 
Sbjct: 1   KHLDQVYVQLIVSGLHKCRFLMIKFINACLH---FGDVNYAHKAFREVSEPDILLWNAII 57

Query: 95  RGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
           +GY++       I +++++  S + P+ ++F  +LKAC     E +  GKQ+H    K G
Sbjct: 58  KGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGI--GKQIHGQTFKYG 115

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
             SN++V  +L+++YA+   +  AR +F+ + +  VVS+ +II+ Y ++  P EAL++F+
Sbjct: 116 FGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFK 175

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
           E+++ N+KP  + ++S +++   +  L  GK IH  + K GL+    +  +L  M+AK G
Sbjct: 176 EMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRG 235

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
            ++ A   F+ M   +   W+AMI  YA +G G ++I +F EM+   +  D IT    + 
Sbjct: 236 LVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVL 295

Query: 335 ACSHTGLVD-----EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389
           A +  G ++     +G+      RD   +  G      ++D+  + G +  A    D + 
Sbjct: 296 ASAQVGSLELARWLDGYISKSEYRDDTFVNTG------LIDMYAKCGSIYLARCVFDRVA 349

Query: 390 IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS----HGGDYVILSNLCARAGRWE 445
            K   +LW  ++     H   G  ++ I    E+  +    + G ++ L   C  +G  +
Sbjct: 350 DKDV-VLWSVMIMGYGLH---GHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVK 405

Query: 446 DVDYLRKLMKDRGV 459
           +   L  LM D G+
Sbjct: 406 EGWELFHLMPDHGI 419


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/537 (37%), Positives = 318/537 (59%), Gaps = 9/537 (1%)

Query: 25  LSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           +++LP     + LK   QI  + IK    + +++LT LI+  ++      +E A LLF  
Sbjct: 35  IAVLPAVAELQELKLGMQILCLAIKCGFYSHVSLLTGLISLFSK---CGEVEIARLLFGE 91

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           I + D++  N M  G++ +     ++ LF ELL+SG      +   L+   +  G   L 
Sbjct: 92  IRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSSTIVGLIPVYSPFGHSYL- 150

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
               +H F +KLG+ S+  V T L  +Y   +++  AR++F+  +E  + S+NA+I+   
Sbjct: 151 -CNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCT 209

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++   + A+SLF+ +Q+ N+ P  VT+ S LS+CA +G+L LG+W+H  IK    +  V 
Sbjct: 210 QNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVY 269

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V+TALIDM+AKCG +  A  +FD M  K+   W+AMI  Y  HG G +++ +F +M+ + 
Sbjct: 270 VSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSS 329

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           V P  +TFL +LYACSH GLV EG   F++M   +G  P  +HY CMVD+LGRAG+L +A
Sbjct: 330 VKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKA 389

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
             FI  +P++  P +W  LL +C  H +  LA    E++FELD  + G YV++SN+ +  
Sbjct: 390 LEFIKAMPVEPGPPVWGALLGACMIHKDTNLAHVASEKLFELDPENIGYYVLMSNIYSVE 449

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
            ++     +R++ K + + K PGC+ IE+  V   F SGD  H  S  +   LD+L  ++
Sbjct: 450 RKYPQAASVRQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQSHPQSKAIYAELDKLTGKM 509

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
              G+  +T+ V H D+E+EEKE+ ++ HSEKLAI FGL++T PG  IR++KNLRVC
Sbjct: 510 TEAGFQTETTTVLH-DLEEEEKELTMKVHSEKLAIAFGLISTEPGAEIRIIKNLRVC 565



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 121/267 (45%), Gaps = 12/267 (4%)

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVT-MLSALSSCALLGSLDLGKWIHEYIKKY 254
           +I+ + ++S   +++ +F ++   N    D+T +++ L + A L  L LG  I     K 
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
           G   +V + T LI + +KCG ++ A  +F  +  KD  + +AMI  +  +G+   S+ +F
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 315 EEMMKAQVSPDEITFLGLLYACS---HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
           +E++ +       T +GL+   S   H+ L     N  +    K GIV        +  +
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPFGHSYLC----NCIHGFCVKLGIVSHSSVSTALTTV 176

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
             R   +  A +  DE   + T   W  ++S C + N L  A   + +  + ++ +    
Sbjct: 177 YCRLNEMIFARQLFDE-SAEKTLASWNAMISGC-TQNGLTDAAISLFQTMQKNNVNPNPV 234

Query: 432 VILSNL--CARAGRWEDVDYLRKLMKD 456
            + S L  CA+ G     +++  L+K 
Sbjct: 235 TVTSILSACAQIGALSLGEWVHSLIKS 261


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/576 (34%), Positives = 322/576 (55%), Gaps = 33/576 (5%)

Query: 2   ATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLIN 61
           +  P   +  S P  L +     LS L           +HA+ I++    D      L+N
Sbjct: 42  SAAPRSSVPASLPAALKSCAALGLSALG--------ASLHALAIRSGAFADRFTANALLN 93

Query: 62  FCTQNP----------------TTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIR 105
              + P                ++++ E    +FD + E D+V +NT+  G +       
Sbjct: 94  LYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHE 153

Query: 106 AIFLFVELLNSGLLPDDYSFPSLL---KACACVGAEALEEGKQLHCFAIKLGLNSNLYVC 162
           A+    ++   G  PD ++  ++L     CA V     + G ++H FA + G +S+++V 
Sbjct: 154 ALGFVRKMCREGFRPDSFTLSTVLPIFAECADV-----KRGLEVHGFAFRNGFDSDVFVG 208

Query: 163 TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK 222
           ++LI++YA C+  + + ++F+N+     + +N+++   A++    EAL +FR + +  ++
Sbjct: 209 SSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVR 268

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
           P  VT  S +  C  L SL  GK +H Y+   G +  V ++++LIDM+ KCG +  A  +
Sbjct: 269 PVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCI 328

Query: 283 FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342
           FD MS  D  +W+AMI+ YA HG   +++++FE M      P+ ITFL +L ACSH GLV
Sbjct: 329 FDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLV 388

Query: 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
           D+GW YF SM + YGIVP ++H+  + D LGRAG LDEAY FI ++ IK T  +W TLL 
Sbjct: 389 DKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLR 448

Query: 403 SCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKV 462
           +C  H N  LA++V ++I EL+    G +V+LSN+ + +GRW +  +LR+ M+ +G+ K 
Sbjct: 449 ACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKD 508

Query: 463 PGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEE 522
           P CS IEV + +  F + D  H +   +  AL+   +++   G+VP+T  V   D+E+E 
Sbjct: 509 PACSWIEVKSKLHVFVAHDRSHPWYDRIIDALNAFSEQMAREGHVPNTEDVFQ-DIEEEH 567

Query: 523 KEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K   L  HSEKLAI FG+++TP GT IRV+KNLRVC
Sbjct: 568 KSYVLCGHSEKLAIVFGIISTPAGTKIRVMKNLRVC 603


>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/553 (35%), Positives = 323/553 (58%), Gaps = 6/553 (1%)

Query: 9   ITQSPPPKLCTNTPN-ALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTK-LINFCTQN 66
            T +P    C       L LL RC +    KQ+HA  IK  L    +     ++  C  +
Sbjct: 18  FTHNPEVNNCGGKEQECLYLLKRCNNIDEFKQVHARFIKLSLFCSSSFSASSVLAKCAHS 77

Query: 67  PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFP 126
              +SM +A  +F  I +P    F TM RGY    +   A+  + E++  G+ PD++++P
Sbjct: 78  GWENSMNYAASIFRGIDDPCTFDFKTMIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYP 137

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS 186
            LLKAC  +  +A+ EGKQ+H    KLGL ++++V  +LIN+Y  C ++E +  +FE + 
Sbjct: 138 CLLKACTRL--KAIREGKQIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLE 195

Query: 187 EPCVVSYNAIITAYARSSRPNEALSLFREL-QERNLKPTDVTMLSALSSCALLGSLDLGK 245
                S++++ +A       +E L LFRE+ +E NLK  +  M+SALS+CA  G+L+LG 
Sbjct: 196 FKSAASWSSMFSACVGMGMWSECLMLFREMCRETNLKAEESGMVSALSACANTGALNLGM 255

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
            IH ++ +   +  + V T+L+DM+ KCG +D+A+ +F  M  ++   +SAMI  +A HG
Sbjct: 256 SIHGFLLRNISELNIIVKTSLVDMYVKCGCIDNALHIFQKMEKRNNLTYSAMISGFALHG 315

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY 365
           +G  ++ MF EM+K  + PD + ++ LL ACSH+GLV EG   F  M  +  + P  +HY
Sbjct: 316 EGESALRMFSEMIKEGLEPDHVVYVSLLNACSHSGLVKEGRRVFGEMLKEGKVEPTAEHY 375

Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
           GC+VDLLGRAG L+EA   I  +PI+   ++WR+ LS C  H N+ L +   + + +L  
Sbjct: 376 GCLVDLLGRAGLLEEALETIQSIPIEQNDVVWRSFLSQCRVHQNIELGQIAAQELLKLCS 435

Query: 426 SHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHS 485
            + GDY+++SN+ ++A  W+DV   R  +  +G+ + PG S+++V      F S D  H 
Sbjct: 436 HNPGDYLLISNMYSQAHMWDDVARSRTEIAIKGLKQTPGFSTVKVKGKTHRFVSQDRSHP 495

Query: 486 YSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPP 545
              ++ K L ++  +LK  GY PD + +   ++++EEK+  L+ HS+K+AI F LL TPP
Sbjct: 496 QCKEIYKMLHQMEWQLKFEGYSPDLTQILL-NVDEEEKKERLKGHSQKVAIAFALLYTPP 554

Query: 546 GTTIRVVKNLRVC 558
           G+ I++ +NLR+C
Sbjct: 555 GSIIKIARNLRMC 567


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/441 (42%), Positives = 281/441 (63%), Gaps = 30/441 (6%)

Query: 147 HCFAIKLGLNSNLYVCTTLINLYAEC----------------------------SDVEAA 178
           HC A+K G+ S+ YV   +++ Y++C                            +  E+A
Sbjct: 1   HCQAVKPGIFSHGYVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAYFESA 60

Query: 179 RRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL 238
            ++FE + E  +V++N++I  +A + +PNEAL+L++ +    ++P   TM+S LS+CA L
Sbjct: 61  YKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAEL 120

Query: 239 GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAM 297
            +L LG+  H Y+ K GL+K +  N AL+D++AKCG + +A  +FD M   ++  +W+++
Sbjct: 121 ATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSL 180

Query: 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG 357
           IV  A +G G +++  F++M +  + P EITF+G+LYACSH G+V+EG+ YF  M+++Y 
Sbjct: 181 IVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYD 240

Query: 358 IVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
           IVP I+HYGCMVDLLGRAG L EAY +I ++P++   ++WRTLL +C+ H +LGL     
Sbjct: 241 IVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFAR 300

Query: 418 ERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREF 477
            R+ +L+    GDYV+LSNL A   RW DV  +R+ M   GV K PG S +E+ N V EF
Sbjct: 301 ARLLQLEPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHVHEF 360

Query: 478 FSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAIT 537
             GD  H  S  + K L E+  +LK+ GYVP T+ V   D+E+EEKE AL YHSEK+AI 
Sbjct: 361 VMGDRTHPQSEAIYKMLVEMAMKLKLAGYVPHTANV-LADIEEEEKESALFYHSEKIAIA 419

Query: 538 FGLLNTPPGTTIRVVKNLRVC 558
           F L+NT PGT IR++KNLRVC
Sbjct: 420 FMLINTLPGTPIRIIKNLRVC 440



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 148/288 (51%), Gaps = 20/288 (6%)

Query: 52  DLNVLTKLINFCTQNPT-------TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPI 104
           DLN+  KL +      T       T+  E A+ +F+ +PE DIV +N++  G++ +  P 
Sbjct: 30  DLNLACKLFDEMPHKDTVTLDTMITAYFESAYKVFELMPEKDIVAWNSVINGFALNGKPN 89

Query: 105 RAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTT 164
            A+ L+  + + G+ PD ++  SLL ACA +    L  G++ H + +K+GLN NL+    
Sbjct: 90  EALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVL--GRRAHVYMVKVGLNKNLHANNA 147

Query: 165 LINLYAECSDVEAARRIFENIS-EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKP 223
           L++LYA+C  +  AR+IF+ +  E  VVS+ ++I   A +    EAL  F++++   L P
Sbjct: 148 LLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGKEALEHFKDMEREGLVP 207

Query: 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKK----YGLDKYVKVNTALIDMHAKCGRLDDA 279
           +++T +  L +C+  G ++ G    EY K+    Y +   ++    ++D+  + G L +A
Sbjct: 208 SEITFVGVLYACSHCGIVNEG---FEYFKRMKEQYDIVPRIEHYGCMVDLLGRAGLLKEA 264

Query: 280 VSVFDNMSGK-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
                +M  + +   W  ++ A   H  GH  +  F      Q+ P +
Sbjct: 265 YDYIQDMPLQPNAVIWRTLLGACTIH--GHLGLGAFARARLLQLEPKD 310


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/571 (36%), Positives = 318/571 (55%), Gaps = 44/571 (7%)

Query: 26  SLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+LP C+  + LK    IH   +K  +  D+ V T L+N          +  A  +FD +
Sbjct: 348 SILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNL---YANCLCVREAQTVFDLM 404

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           P  ++V +N+++  Y     P + + +F E++ +G+ PD  +  S+L AC+    + L+ 
Sbjct: 405 PHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACS--DLQDLKS 462

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY-- 200
           GK +H FA++ G+  +++VC  L++LYA+C  V  A+ +F+ I    V S+N I+TAY  
Sbjct: 463 GKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFT 522

Query: 201 ---------------------------------ARSSRPNEALSLFRELQERNLKPTDVT 227
                                             ++SR  EA+ +FR++Q    KP + T
Sbjct: 523 NKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETT 582

Query: 228 MLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS 287
           + S L +C+L   L +GK IH Y+ ++  D  +    AL+DM+AKCG L  + +VFD M 
Sbjct: 583 IYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMP 642

Query: 288 GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN 347
            KD  +W+ MI A   HG G +++ +FE+M+ + V PD  TF  +L ACSH+ LV+EG  
Sbjct: 643 IKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQ 702

Query: 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
            F SM   + + P  +HY C+VD+  RAG L+EAY FI  +P++ T I W+  L+ C  +
Sbjct: 703 IFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVY 762

Query: 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSS 467
            N+ LAK   +++FE+D +   +YV L N+   A  W +   +RKLMK+RG+ K PGCS 
Sbjct: 763 KNVELAKISAKKLFEIDPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSW 822

Query: 468 IEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIAL 527
             V N V  F +GD  +  S  +   LDEL  ++K  GY PDT  V H D++ EEK  +L
Sbjct: 823 FHVGNRVHTFVAGDKSNMESDKIYNFLDELFAKIKAAGYKPDTDYVLH-DIDQEEKAESL 881

Query: 528 RYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             HSEKLA+ FG+LN    +TIRV KNLR+C
Sbjct: 882 CNHSEKLAVAFGILNLNGQSTIRVFKNLRIC 912



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 117/432 (27%), Positives = 212/432 (49%), Gaps = 43/432 (9%)

Query: 27  LLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           +L  C+  + LK    IH   +K  +  ++ V   L+N      +   +  A  +FD +P
Sbjct: 248 ILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNL---YESCLCVREAQAVFDLMP 304

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
             +++ +N++A  Y     P + + +F E+  +G+ PD  +  S+L AC+    + L+ G
Sbjct: 305 HRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACS--QLKDLKSG 362

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
           K +H FA+K G+  +++VCT L+NLYA C  V  A+ +F+ +    VV++N++ + Y   
Sbjct: 363 KTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNC 422

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
             P + L++FRE+    +KP  VTMLS L +C+ L  L  GK IH +  ++G+ + V V 
Sbjct: 423 GFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVC 482

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
            AL+ ++AKC  + +A  VFD +  ++  +W+ ++ AY T+ +  K + MF +M + +V 
Sbjct: 483 NALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVK 542

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDK---------YGIVPG------------- 361
            DEIT+  ++  C     ++E    F  M+           Y I+               
Sbjct: 543 ADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEI 602

Query: 362 ----IKHY--------GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
                +H+          +VD+  + G L  +    D +PIK     W T++ +   H N
Sbjct: 603 HCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDV-FSWNTMIFANGMHGN 661

Query: 410 LGLAKQVIERIF 421
              A  + E++ 
Sbjct: 662 GKEALSLFEKML 673



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 202/407 (49%), Gaps = 13/407 (3%)

Query: 20  NTPNALSLLPRCTSFRG---LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           + P  +++   C + R    +KQ H    +  + +D+++    I+          +E A 
Sbjct: 39  DKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFIH---AYGKCKCVEGAR 95

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +FD +   D+V +N+++  Y     P + + +F ++  + +  +  +  S+L  C+   
Sbjct: 96  RVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCS--D 153

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
            + L+ GK++H F ++ G+  +++V +  +N YA+C  V  A+ +F+ +    VV++N++
Sbjct: 154 LQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSL 213

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
            + Y     P + L++FRE+    +KP  VT+   LS+C+ L  L  GK IH +  K+G+
Sbjct: 214 SSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGM 273

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
            + V V+ AL++++  C  + +A +VFD M  ++   W+++   Y   G   K + +F E
Sbjct: 274 VENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFRE 333

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M    V PD +    +L ACS    +  G    +    K+G+V  +     +V+L     
Sbjct: 334 MGLNGVKPDPMAMSSILPACSQLKDLKSG-KTIHGFAVKHGMVEDVFVCTALVNLYANCL 392

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
            + EA    D +P ++  + W + LSSC  + N G  ++ +    E+
Sbjct: 393 CVREAQTVFDLMPHRNV-VTWNS-LSSC--YVNCGFPQKGLNVFREM 435



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 155/300 (51%), Gaps = 4/300 (1%)

Query: 103 PIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVC 162
           P  AI ++      G+ PD   F ++ KACA    +AL+  KQ H  A + G+ S++ + 
Sbjct: 21  PNEAIKIYTSSRARGIKPDKPVFMAVAKACA-ASRDALKV-KQFHDDATRCGVMSDVSIG 78

Query: 163 TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK 222
              I+ Y +C  VE ARR+F+++    VV++N++   Y     P + L++FR++    +K
Sbjct: 79  NAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVK 138

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
              +T+ S L  C+ L  L  GK IH ++ ++G+ + V V++A ++ +AKC  + +A +V
Sbjct: 139 ANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTV 198

Query: 283 FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342
           FD M  +D   W+++   Y   G   K + +F EM+   V PD +T   +L ACS    +
Sbjct: 199 FDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDL 258

Query: 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
             G    +    K+G+V  +     +V+L      + EA    D +P ++  I W +L S
Sbjct: 259 KSG-KAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNV-ITWNSLAS 316



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 95/218 (43%), Gaps = 5/218 (2%)

Query: 206 PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTA 265
           PNEA+ ++   + R +KP     ++   +CA        K  H+   + G+   V +  A
Sbjct: 21  PNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNA 80

Query: 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
            I  + KC  ++ A  VFD++  +D   W+++   Y   G   + + +F +M   +V  +
Sbjct: 81  FIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKAN 140

Query: 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI 385
            +T   +L  CS    +  G    +    ++G+V  +      V+   +   + EA    
Sbjct: 141 PLTVSSILPGCSDLQDLKSG-KEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVF 199

Query: 386 DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
           D +P +   + W + LSSC  + N G  ++ +    E+
Sbjct: 200 DLMPHRDV-VTWNS-LSSC--YVNCGFPQKGLNVFREM 233


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/557 (38%), Positives = 321/557 (57%), Gaps = 13/557 (2%)

Query: 8   PITQSPPPKLCTNTPNA---LSLLPRC--TSFRGL-KQIHAVTIKTHLQNDLNVLTKLIN 61
           PI      ++    PN    L +L  C  TS  G+ KQIH  T K    +++ V   L++
Sbjct: 84  PIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVS 143

Query: 62  FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPD 121
              +      + +A ++FD++ +  +V + ++  GY ++  P+ A+ +F E+    + PD
Sbjct: 144 MYAK---FGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPD 200

Query: 122 DYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRI 181
             +  S++ A   V  E L +GK +H    KLGL     +  +L  +YA+   VE AR  
Sbjct: 201 WIALVSVMTAYTNV--EDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFF 258

Query: 182 FENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSL 241
           F  + +P ++ +NA+I+ YA +    EA+ LFRE+  +N++   +TM SA+ + A +GSL
Sbjct: 259 FNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSL 318

Query: 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
           +L +W+  YI K        VNT LIDM+AKCG +  A  VFD ++ KD   WS MI+ Y
Sbjct: 319 ELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGY 378

Query: 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG 361
             HG G ++I ++ EM +A V P++ TF+GLL AC ++GLV EGW  F+ M D +GI P 
Sbjct: 379 GLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPD-HGIEPH 437

Query: 362 IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421
            +HY C+VDLLGRAG L++AY FI  +PIK    +W  LLS+C  H  + L +   E++F
Sbjct: 438 HQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLF 497

Query: 422 ELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGD 481
            LD  + G YV LSNL A A  W  V  +R +M  +G+ K  G SSIE+N  +  F  GD
Sbjct: 498 ILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGD 557

Query: 482 GVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLL 541
             H  S ++ + LD L K LK  GYVP    V H D+  EE E  L +HSE+LA+ +G++
Sbjct: 558 RSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLH-DLNHEEIEETLCHHSERLAVAYGII 616

Query: 542 NTPPGTTIRVVKNLRVC 558
           +T PGTT+R+ KNLR C
Sbjct: 617 STAPGTTLRITKNLRAC 633



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 116/435 (26%), Positives = 217/435 (49%), Gaps = 24/435 (5%)

Query: 34  FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM 93
            + L Q++   I + L     ++ K IN C        + +AH  F  + EPDI+L+N +
Sbjct: 15  LKHLDQVYVQLIVSGLHKCRFLMIKFINACLH---FGDVNYAHKAFREVSEPDILLWNAI 71

Query: 94  ARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL 153
            +GY++       I +++++  S + P+ ++F  +LKAC     E +  GKQ+H    K 
Sbjct: 72  IKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGI--GKQIHGQTFKY 129

Query: 154 GLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLF 213
           G  SN++V  +L+++YA+   +  AR +F+ + +  VVS+ +II+ Y ++  P EAL++F
Sbjct: 130 GFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVF 189

Query: 214 RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273
           +E+++ N+KP  + ++S +++   +  L  GK IH  + K GL+    +  +L  M+AK 
Sbjct: 190 KEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKR 249

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
           G ++ A   F+ M   +   W+AMI  YA +G G ++I +F EM+   +  D IT    +
Sbjct: 250 GLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAV 309

Query: 334 YACSHTGLVD-----EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388
            A +  G ++     +G+      RD   +  G      ++D+  + G +  A    D +
Sbjct: 310 LASAQVGSLELARWLDGYISKSEYRDDTFVNTG------LIDMYAKCGSIYLARCVFDRV 363

Query: 389 PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS----HGGDYVILSNLCARAGRW 444
             K   +LW  ++     H   G  ++ I    E+  +    + G ++ L   C  +G  
Sbjct: 364 ADKDV-VLWSVMIMGYGLH---GHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLV 419

Query: 445 EDVDYLRKLMKDRGV 459
           ++   L  LM D G+
Sbjct: 420 KEGWELFHLMPDHGI 434


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/568 (35%), Positives = 324/568 (57%), Gaps = 36/568 (6%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           P  L  + R +S   ++ +HA  +K  +  + +V T L+   T          A  L   
Sbjct: 47  PPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLV---TAYAAGGDGAAARALLSE 103

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
                 V++N +  G++R +    A   FV++  +G  P   ++ S+L AC     + L 
Sbjct: 104 RERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLL 163

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS--------------- 186
            G Q+H   +  G+  +L V   L+++YAEC+D+E+A ++F+ +                
Sbjct: 164 -GMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLT 222

Query: 187 ----------------EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLS 230
                           E   VS+ A+I  Y +++R  EAL +FRE+Q  N+   + TM+S
Sbjct: 223 RLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVS 282

Query: 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290
            +++CA LG+L++G+W+  Y+ + G+     V  ALIDM++KCG ++ A+ VF +M  +D
Sbjct: 283 VITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRD 342

Query: 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350
              W+A+I+  A +G G ++I MF  M+    +PDE+TF+G+L AC+H GLVD+G  +F 
Sbjct: 343 KFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFL 402

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
           SMR+ Y I P + HYGC++DL GRAG++ EA   ID++P+     +W TLL++C  H N 
Sbjct: 403 SMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNS 462

Query: 411 GLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEV 470
            + + V ER+ ++D  +   Y +LSN+ A+  RWEDV  LR  + ++G+ K PGCS IE+
Sbjct: 463 EIGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEM 522

Query: 471 NNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYH 530
           N ++ EF +GD  H  S ++   L+ ++ +L  VGY PD + V     E+E++++ L +H
Sbjct: 523 NGIIHEFVAGDQSHPMSKEIYCKLESIINDLNNVGYFPDVTEVFVEVAEEEKQKV-LFWH 581

Query: 531 SEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           SEKLAI F LL++ P T IR+VKNLR+C
Sbjct: 582 SEKLAIAFALLSSEPNTVIRIVKNLRMC 609



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 144/309 (46%), Gaps = 37/309 (11%)

Query: 106 AIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTL 165
           A+  +  +L  G +PD Y+FP LLKA A   + A    + +H   +K G+  N +V T+L
Sbjct: 27  AVAGYARMLARGAMPDAYTFPPLLKAVARGSSAA--PVRAVHAHVVKFGMGRNAHVATSL 84

Query: 166 INLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTD 225
           +  YA   D  AAR +         V +NA+I+ + R  R  EA   F ++      PT 
Sbjct: 85  VTAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTP 144

Query: 226 VTMLSALSSCAL-LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC----------- 273
           VT +S LS+C    G + LG  +H  +   G+   ++V  AL+DM+A+C           
Sbjct: 145 VTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFD 204

Query: 274 --------------------GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
                               GR+D+A  +F  M  +DT +W+AMI  Y    +  +++ M
Sbjct: 205 GMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEM 264

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           F EM  + VS DE T + ++ AC+  G ++ G W   Y  R   GI         ++D+ 
Sbjct: 265 FREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQ--GIKMDAFVGNALIDMY 322

Query: 373 GRAGRLDEA 381
            + G ++ A
Sbjct: 323 SKCGSIERA 331


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/603 (34%), Positives = 330/603 (54%), Gaps = 56/603 (9%)

Query: 2   ATTPSPPITQSPPPKL---CTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTK 58
           A  PSP  T+ P   +         A +LL  C S R   ++HA  ++  +  D     K
Sbjct: 8   AVLPSPSSTRHPSGGVQHGVLTADRAAALLAGCASARRASELHAAAVRAGVDQD-----K 62

Query: 59  LINFCTQNPTTSS--MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVE-LLN 115
            ++F  Q    +S  ++ A  L  R P+P  V + +    +S       A+ L  E LL+
Sbjct: 63  AVDFRLQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHHAALALLSEMLLS 122

Query: 116 SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLY------ 169
            GLLP  ++  + L AC       L  G+ LH +A+KL L+   YV T L+ +Y      
Sbjct: 123 HGLLPTAHTLSASLPACG-----GLAVGRALHGYAVKLALSGEPYVATALLGMYARAGDA 177

Query: 170 --------------------------AECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
                                     A+   ++ AR +F+ +    ++ +NA++  Y + 
Sbjct: 178 AAARVLFDGMQPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQH 237

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY---V 260
            RP+EAL LFR +    ++P +V+++ ALS+ A LG+ + G+W+H ++      +     
Sbjct: 238 GRPSEALRLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNA 297

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSG--KDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
           +V TALIDM+ KCG L+DAV+VF ++    +D  AW+AM+  YA HG   +++  F ++ 
Sbjct: 298 RVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQLR 357

Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
              + P +ITF+G+L ACSH+GLVDEG   F SM ++YGI P ++HYGCMVDLLGRAGR+
Sbjct: 358 AQGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEHYGCMVDLLGRAGRV 417

Query: 379 DEAYRFIDELP-IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437
           +EA+  +  +   K   ++W +LL++C  H N+ L +++ + +     ++ G YV+LSN+
Sbjct: 418 EEAFELVQSMTRTKPDAVMWASLLAACRLHKNMELGQRIADHLVANGLANSGTYVLLSNM 477

Query: 438 CARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDEL 497
            A AG W +V  +R +M+  G+ K PGCS++EV   V EF +GD  H  + ++   L+E+
Sbjct: 478 YAAAGNWREVGRVRAMMRASGIQKEPGCSAVEVGRRVVEFVAGDRSHPRAAEIYAKLEEV 537

Query: 498 VKELKMVGYVPDTS--LVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNL 555
               +  G+VP T   L    D +   KE AL  HSEKLA+ FGL++TPPGT I++VKNL
Sbjct: 538 NGMARARGHVPRTELVLHDLDDDDTAAKEQALAVHSEKLALAFGLISTPPGTAIKIVKNL 597

Query: 556 RVC 558
           R C
Sbjct: 598 RAC 600


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 217/544 (39%), Positives = 319/544 (58%), Gaps = 14/544 (2%)

Query: 22   PNAL---SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
            PN     S+L  C+S R +   +QIH   +KT  Q ++ V + LI+   +      ++HA
Sbjct: 471  PNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAK---LGKLDHA 527

Query: 76   HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
              +F R+ E D+V +  M  GY++ +    A+ LF E+ + G+  D+  F S + ACA  
Sbjct: 528  LKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACA-- 585

Query: 136  GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
            G +AL +G+Q+H  A   G + +L V   L++LYA C  V  A   F+ I     +S+N+
Sbjct: 586  GIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNS 645

Query: 196  IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
            +I+ +A+S    EALSLF ++ +   +    T   A+S+ A + ++ LGK IH  I K G
Sbjct: 646  LISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTG 705

Query: 256  LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
             D   +V+  LI ++AKCG +DDA   F  M  K+  +W+AM+  Y+ HG G K++ +FE
Sbjct: 706  HDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFE 765

Query: 316  EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
            +M +  V P+ +TF+G+L ACSH GLVDEG  YF SMR+ +G+VP  +HY C+VDLLGR+
Sbjct: 766  DMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRS 825

Query: 376  GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
            G L  A RF++E+PI+   ++ RTLLS+C  H N+ + +     + EL+      YV+LS
Sbjct: 826  GLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLS 885

Query: 436  NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
            N+ A  G+W   D  R++MKDRGV K PG S IEVNN V  FF+GD  H     + + L 
Sbjct: 886  NMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQKHPNVDKIYEYLR 945

Query: 496  ELVKELKMVGYVPDT-SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
            +L +     GY+P T SL++  D E  +K      HSEKLAI FGLL+    T I V KN
Sbjct: 946  DLNELAAENGYIPQTNSLLN--DAERRQKGPTQIIHSEKLAIAFGLLSLSSSTPIHVFKN 1003

Query: 555  LRVC 558
            LRVC
Sbjct: 1004 LRVC 1007



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/380 (30%), Positives = 197/380 (51%), Gaps = 10/380 (2%)

Query: 26  SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  CT     K   Q+H + +K     +  V   L+   ++     +   A  +F+ +
Sbjct: 276 SVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSR---LGNFIPAEQVFNAM 332

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
            + D V +N++  G S+     +A+ LF ++    L PD  +  SLL AC+ VGA  L  
Sbjct: 333 LQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGA--LLV 390

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           GKQ H +AIK G++S++ +   L++LY +CSD++ A   F +     VV +N ++ AY  
Sbjct: 391 GKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGL 450

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
               NE+  +F ++Q   ++P   T  S L +C+ L ++DLG+ IH  + K G    V V
Sbjct: 451 LDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYV 510

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
           ++ LIDM+AK G+LD A+ +F  +  KD  +W+AMI  YA H +  +++ +F+EM    +
Sbjct: 511 SSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGI 570

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
             D I F   + AC+    +++G    ++     G    +     +V L  R G++ +AY
Sbjct: 571 HSDNIGFASAISACAGIQALNQG-QQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAY 629

Query: 383 RFIDELPIKSTPILWRTLLS 402
              D++  K   I W +L+S
Sbjct: 630 FAFDKIFSKDN-ISWNSLIS 648



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 191/405 (47%), Gaps = 9/405 (2%)

Query: 19  TNTPNALSLLPRCTS---FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
            N+   L LL  C S   F    ++H   +K     ++ +  +L++          ++ A
Sbjct: 66  ANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYI---AFGDLDGA 122

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
             +FD +P   +  +N +   +   K   R + LF  +L   + PD+ ++  +L+ C   
Sbjct: 123 VTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGG- 181

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
           G       +++H   I  G  ++L+VC  LI+LY +   + +A+++F+ + +   VS+ A
Sbjct: 182 GDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVA 241

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +++  ++S    EA+ LF ++    + PT     S LS+C  +    +G+ +H  + K G
Sbjct: 242 MLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQG 301

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
                 V  AL+ ++++ G    A  VF+ M  +D  +++++I   +  G   K++ +F+
Sbjct: 302 FSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFK 361

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
           +M    + PD +T   LL ACS  G +  G   F+S   K G+   I   G ++DL  + 
Sbjct: 362 KMCLDCLKPDCVTVASLLSACSSVGALLVG-KQFHSYAIKAGMSSDIILEGALLDLYVKC 420

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
             +  A+ F      ++  +LW  +L +    +NL  + ++  ++
Sbjct: 421 SDIKTAHEFFLSTETENV-VLWNVMLVAYGLLDNLNESFKIFTQM 464



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/410 (21%), Positives = 171/410 (41%), Gaps = 56/410 (13%)

Query: 43  VTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKT 102
           +TIKT+ ++ +N + +        P  S        F +  E +  L    +  YS  + 
Sbjct: 3   ITIKTYFKSIVNKIKQF------RPVVSIF----FFFQKFLEHNTAL----SYAYSNDEG 48

Query: 103 PIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVC 162
               I     +   G+  +  ++  LL  C   G     +G +LH   +K+G  + + +C
Sbjct: 49  EANGINFLHLMEERGVRANSQTYLWLLDGCLSSGW--FSDGWKLHGKILKMGFCAEVVLC 106

Query: 163 TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK 222
             L++LY    D++ A  +F+ +    +  +N ++  +         L LFR + +  +K
Sbjct: 107 ERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVK 166

Query: 223 PTDVTMLSALSSCALLGSLDLG----KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
           P + T    L  C   G  D+     + IH     +G +  + V   LID++ K G L+ 
Sbjct: 167 PDERTYAGVLRGC---GGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNS 223

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS- 337
           A  VFD +  +D+ +W AM+   +  G   +++L+F +M  + V P    F  +L AC+ 
Sbjct: 224 AKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTK 283

Query: 338 ----------HTGLVDEGW-------NYFYSMRDKYG-IVPGIK-----------HYGCM 368
                     H  ++ +G+       N   ++  + G  +P  +            Y  +
Sbjct: 284 VEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSL 343

Query: 369 VDLLGRAGRLDEAYRFIDEL---PIKSTPILWRTLLSSCSSHNNLGLAKQ 415
           +  L + G  D+A     ++    +K   +   +LLS+CSS   L + KQ
Sbjct: 344 ISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQ 393


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/536 (37%), Positives = 306/536 (57%), Gaps = 9/536 (1%)

Query: 26   SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
            S+L  C +   L   KQIH    ++ LQ D+N+   LIN   +     S++ A  +F  +
Sbjct: 537  SVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIR---CGSLQDARNVFHSL 593

Query: 83   PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
               D++ +  M  G +     ++AI LF ++ N G  P   +F S+LK C    +  L+E
Sbjct: 594  QHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVC--TSSACLDE 651

Query: 143  GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
            GK++  + +  G   +  V   LI+ Y++   +  AR +F+ +    +VS+N II  YA+
Sbjct: 652  GKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQ 711

Query: 203  SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
            +     A+    ++QE+++ P   + +S L++C+   +L+ GK +H  I K  L   V+V
Sbjct: 712  NGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRV 771

Query: 263  NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
              ALI M+AKCG   +A  VFDN+  K+   W+AMI AYA HG   K++  F  M K  +
Sbjct: 772  GAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGI 831

Query: 323  SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
             PD  TF  +L AC+H GLV EG+  F SM  +YG++P I+HYGC+V LLGRA R  EA 
Sbjct: 832  KPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAE 891

Query: 383  RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
              I+++P      +W TLL +C  H N+ LA+       +L+  +   Y++LSN+ A AG
Sbjct: 892  TLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAG 951

Query: 443  RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
            RW+DV  +R++M+ RG+ K PG S IEV+N++ EF + D  H  + ++   L  L  E++
Sbjct: 952  RWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEME 1011

Query: 503  MVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
              GY PDT  V H D+    +E +L  HSE+LAI +GL+ TPPGT IR+ KNLR+C
Sbjct: 1012 EAGYFPDTQHVLH-DLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRIC 1066



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 117/428 (27%), Positives = 218/428 (50%), Gaps = 19/428 (4%)

Query: 20  NTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N    LS+L  C++ + L   K IH+   +    +D+ +   LI+   +      +  A 
Sbjct: 329 NRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYAR---CGDLPKAR 385

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            LF  +P+ D++ +N +  GY+R +    A+ L+ ++ + G+ P   +F  LL ACA   
Sbjct: 386 ELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACA--N 443

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
           + A  +GK +H   ++ G+ SN ++   L+N+Y  C  +  A+ +FE      V+S+N++
Sbjct: 444 SSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSM 503

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           I  +A+      A  LF+E+Q   L+P ++T  S LS C    +L+LGK IH  I + GL
Sbjct: 504 IAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGL 563

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
              V +  ALI+M+ +CG L DA +VF ++  +D  +W+AMI   A  G+  K+I +F +
Sbjct: 564 QLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQ 623

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYF-YSMRDKYGIVPGIKHYGCMVDLLGRA 375
           M      P + TF  +L  C+ +  +DEG     Y +   Y +  G+ +   ++    ++
Sbjct: 624 MQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGN--ALISAYSKS 681

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS----HGGDY 431
           G + +A    D++P +   + W  +++  + +   GL +  +E  +++ +     +   +
Sbjct: 682 GSMTDAREVFDKMPSRDI-VSWNKIIAGYAQN---GLGQTAVEFAYQMQEQDVVPNKFSF 737

Query: 432 VILSNLCA 439
           V L N C+
Sbjct: 738 VSLLNACS 745



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 199/388 (51%), Gaps = 10/388 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K+IH +T++  L +D+ V T L+  C +     S + A   F    + D+V++N +    
Sbjct: 249 KRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQA---FKGTADRDVVVYNALIAAL 305

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           ++    + A   +  + + G+  +  ++ S+L AC+   ++ALE GK +H    + G +S
Sbjct: 306 AQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACST--SKALEAGKLIHSHISEDGHSS 363

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           ++ +   LI++YA C D+  AR +F  + +  ++S+NAII  YAR     EA+ L++++Q
Sbjct: 364 DVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQ 423

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              +KP  VT L  LS+CA   +   GK IHE I + G+     +  AL++M+ +CG L 
Sbjct: 424 SEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLM 483

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           +A +VF+    +D  +W++MI  +A HG    +  +F+EM   ++ PD ITF  +L  C 
Sbjct: 484 EAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCK 543

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           +   ++ G    +    + G+   +     ++++  R G L +A      L  +   + W
Sbjct: 544 NPEALELG-KQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDV-MSW 601

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDD 425
             ++  C+     G   + IE  +++ +
Sbjct: 602 TAMIGGCADQ---GEDMKAIELFWQMQN 626



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 131/466 (28%), Positives = 225/466 (48%), Gaps = 29/466 (6%)

Query: 10  TQSPPPKLCTNTPNA--LSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCT 64
           T  P P   T T  A  ++LL  CT  R L   K+IHA  ++  +  D+ +   LIN   
Sbjct: 17  THQPRP---TETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYV 73

Query: 65  QNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYS 124
           +     S+  AH +F  +P  D++ +N++   Y++     +A  LF E+ N+G +P+  +
Sbjct: 74  K---CRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKIT 130

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
           + S+L   AC     LE GK++H   IK G   +  V  +L+++Y +C D+  AR++F  
Sbjct: 131 YISIL--TACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAG 188

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
           IS   VVSYN ++  YA+ +   E L LF ++    + P  VT ++ L +      LD G
Sbjct: 189 ISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEG 248

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
           K IH+   + GL+  ++V TAL+ M  +CG +D A   F   + +D   ++A+I A A H
Sbjct: 249 KRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQH 308

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364
           G   ++   +  M    V+ +  T+L +L ACS +  ++ G    +S   + G    ++ 
Sbjct: 309 GHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQI 367

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
              ++ +  R G L +A      +P K   I W  +++  +   + G A     R+++  
Sbjct: 368 GNALISMYARCGDLPKARELFYTMP-KRDLISWNAIIAGYARREDRGEAM----RLYKQM 422

Query: 425 DSHGGD-----YVILSNLCARAGRWED-----VDYLRKLMKDRGVL 460
            S G       ++ L + CA +  + D      D LR  +K  G L
Sbjct: 423 QSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHL 468



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 130/490 (26%), Positives = 229/490 (46%), Gaps = 50/490 (10%)

Query: 20  NTPNALSLLPRCTS---FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N    +S+L  C S       K+IH+  IK   Q D  V   L++   +      +  A 
Sbjct: 127 NKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGK---CGDLPRAR 183

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +F  I   D+V +NTM   Y++       + LF ++ + G+ PD  ++ +LL A     
Sbjct: 184 QVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTT-- 241

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
              L+EGK++H   ++ GLNS++ V T L+ +   C DV++A++ F+  ++  VV YNA+
Sbjct: 242 PSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNAL 301

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           I A A+     EA   +  ++   +     T LS L++C+   +L+ GK IH +I + G 
Sbjct: 302 IAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGH 361

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
              V++  ALI M+A+CG L  A  +F  M  +D  +W+A+I  YA      +++ ++++
Sbjct: 362 SSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQ 421

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEG------------------WNYFYSMRDKYG- 357
           M    V P  +TFL LL AC+++    +G                   N   +M  + G 
Sbjct: 422 MQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGS 481

Query: 358 ------IVPGIK-----HYGCMVDLLGRAGRLDEAYRFIDELP---IKSTPILWRTLLSS 403
                 +  G +      +  M+    + G  + AY+   E+    ++   I + ++LS 
Sbjct: 482 LMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSG 541

Query: 404 CSSHNNLGLAKQVIERIFELD---DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460
           C +   L L KQ+  RI E     D + G+ +I  N+  R G  +D   +   ++ R V+
Sbjct: 542 CKNPEALELGKQIHGRITESGLQLDVNLGNALI--NMYIRCGSLQDARNVFHSLQHRDVM 599

Query: 461 K----VPGCS 466
                + GC+
Sbjct: 600 SWTAMIGGCA 609


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/524 (37%), Positives = 324/524 (61%), Gaps = 6/524 (1%)

Query: 36  GLKQI-HAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMA 94
           GL QI H +  K  L +D+ V   LI    +       E    +FD +    +  +N + 
Sbjct: 225 GLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVE--EAVKRVFDLMDTKTVSSWNALL 282

Query: 95  RGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
            GY+++  P +A+ L++++ +SGL PD ++  SLL AC+ +  ++L  G+++H FA++ G
Sbjct: 283 CGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRM--KSLHYGEEIHGFALRNG 340

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           L  + ++  +L++LY  C    AA+ +F+ +    +VS+N +I  Y+++  P+EA++LFR
Sbjct: 341 LAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFR 400

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
           ++    ++P ++ ++    +C+ L +L LGK +H +  K  L + + V++++IDM+AK G
Sbjct: 401 QMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGG 460

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
            +  +  +FD +  KD  +W+ +I  Y  HG+G +++ +FE+M++  + PD+ TF G+L 
Sbjct: 461 CIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILM 520

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           ACSH GLV++G  YF  M + + I P ++HY C+VD+LGRAGR+D+A R I+E+P     
Sbjct: 521 ACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDS 580

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454
            +W +LLSSC  H NLGL ++V  ++ EL+     +YV++SNL A +G+W+DV  +R  M
Sbjct: 581 RIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRM 640

Query: 455 KDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVH 514
           KD G+ K  GCS IEV   V  F  GD +     ++++    L  ++  +GY PDT  V 
Sbjct: 641 KDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVL 700

Query: 515 HGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           H D+E+E+K   LR HSEKLAI+FGLLNT  G  +RV KNLR+C
Sbjct: 701 H-DLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRIC 743



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 109/424 (25%), Positives = 213/424 (50%), Gaps = 16/424 (3%)

Query: 38  KQIHA-VTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           +++H  V+  T   ND  + T++I   T      S   + ++FD++   ++  +N +   
Sbjct: 125 RRLHEMVSASTQFCNDFVLNTRII---TMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSA 181

Query: 97  YSRSKTPIRAIFLFVELLN-SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155
           Y+R++    A+ +F EL++ +   PD+++ P ++KACA  G   L  G+ +H  A K+ L
Sbjct: 182 YTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACA--GLLDLGLGQIIHGMATKMDL 239

Query: 156 NSNLYVCTTLINLYAECSDV-EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
            S+++V   LI +Y +C  V EA +R+F+ +    V S+NA++  YA++S P +AL L+ 
Sbjct: 240 VSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYL 299

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
           ++ +  L P   T+ S L +C+ + SL  G+ IH +  + GL     +  +L+ ++  CG
Sbjct: 300 QMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCG 359

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
           +   A  +FD M  +   +W+ MI  Y+ +G   ++I +F +M+   + P EI  + +  
Sbjct: 360 KPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCG 419

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           ACS    +  G    +    K  +   I     ++D+  + G +  + R  D L  K   
Sbjct: 420 ACSQLSALRLG-KELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVA 478

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELD---DSHGGDYVILSNLCARAGRWED-VDYL 450
             W  +++    H     A ++ E++  L    D      ++++  C+ AG  ED ++Y 
Sbjct: 479 S-WNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMA--CSHAGLVEDGLEYF 535

Query: 451 RKLM 454
            +++
Sbjct: 536 NQML 539



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 120/234 (51%), Gaps = 4/234 (1%)

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTT-LINLYAECSDVEAARRIFENISEPCVV 191
           AC   + +E G++LH          N +V  T +I +Y+ C     +R +F+ +    + 
Sbjct: 114 ACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLF 173

Query: 192 SYNAIITAYARSSRPNEALSLFREL-QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY 250
            +NAI++AY R+    +A+S+F EL      KP + T+   + +CA L  L LG+ IH  
Sbjct: 174 QWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGM 233

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVS-VFDNMSGKDTQAWSAMIVAYATHGQGHK 309
             K  L   V V  ALI M+ KCG +++AV  VFD M  K   +W+A++  YA +    K
Sbjct: 234 ATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRK 293

Query: 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGI 362
           ++ ++ +M  + + PD  T   LL ACS    +  G   + +++R+   + P I
Sbjct: 294 ALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFI 347


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/482 (41%), Positives = 292/482 (60%), Gaps = 8/482 (1%)

Query: 79   FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
            F+++ +  +V + ++   Y R      AI LF E+ + G+ PD YS  S+L ACAC    
Sbjct: 712  FEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACAC--GN 769

Query: 139  ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
            +L++G+ +H +  K  +   L V   L+++YA+C  +E A  +F  I    +VS+N +I 
Sbjct: 770  SLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIG 829

Query: 199  AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
             Y+++S PNEAL LF E+Q+ + +P  +TM   L +C  L +L++G+ IH  I + G   
Sbjct: 830  GYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSS 888

Query: 259  YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
             + V  ALIDM+ KCG L  A  +FD +  KD   W+ MI     HG G+++I  F++M 
Sbjct: 889  ELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMR 948

Query: 319  KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
             A + PDEITF  +LYACSH+GL++EGW +F SM  +  + P ++HY CMVDLL R G L
Sbjct: 949  IAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNL 1008

Query: 379  DEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438
             +AY  I+ +PIK    +W  LL  C  H+++ LA++V E +FEL+  + G YV+L+N+ 
Sbjct: 1009 SKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIY 1068

Query: 439  ARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELV 498
            A A +WE+V  LR+ +  RG+ K PGCS IEV      F S D  H  +  +   L+ L 
Sbjct: 1069 AEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLR 1128

Query: 499  KELKMVGYVPDT--SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLR 556
             ++K  G+ P    +L++ GDM   EKE+AL  HSEKLA+ FG+LN P G TIRV KNLR
Sbjct: 1129 IKMKNEGHSPKMRYALINAGDM---EKEVALCGHSEKLAMAFGILNLPSGRTIRVAKNLR 1185

Query: 557  VC 558
            VC
Sbjct: 1186 VC 1187



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 115/403 (28%), Positives = 200/403 (49%), Gaps = 15/403 (3%)

Query: 19  TNTPNALSLLPRCTSFRG----LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEH 74
           T      S + +C +  G     K+IH    K    +   V+  LI        +  ++ 
Sbjct: 550 TGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLI---ATYFKSGEVDS 606

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           AH LFD + + D+V +N+M  G   +     A+  FV++L   +  D  +  + + ACA 
Sbjct: 607 AHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACAN 666

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           VG+ +L  G+ LH   +K   +  +    TL+++Y++C ++  A + FE + +  VVS+ 
Sbjct: 667 VGSLSL--GRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWT 724

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           ++I AY R    ++A+ LF E++ + + P   +M S L +CA   SLD G+ +H YI+K 
Sbjct: 725 SLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKN 784

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
            +   + V+ AL+DM+AKCG +++A  VF  +  KD  +W+ MI  Y+ +   ++++ +F
Sbjct: 785 NMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLF 844

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
            EM K +  PD IT   LL AC     ++ G    +    + G    +     ++D+  +
Sbjct: 845 AEMQK-ESRPDGITMACLLPACGSLAALEIGRG-IHGCILRNGYSSELHVANALIDMYVK 902

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
            G L  A    D +P K   I W  ++S C  H   GL  + I
Sbjct: 903 CGSLVHARLLFDMIPEKDL-ITWTVMISGCGMH---GLGNEAI 941



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 180/342 (52%), Gaps = 5/342 (1%)

Query: 68  TTSSMEHAHLLFDRI-PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFP 126
           +  ++     +FD I  +  + L+N M   Y++      +I+LF ++   G+  + Y+F 
Sbjct: 498 SCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFS 557

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS 186
            +LK  A +G   + E K++H    KLG  S   V  +LI  Y +  +V++A ++F+ + 
Sbjct: 558 CILKCFATLGR--VGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELG 615

Query: 187 EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW 246
           +  VVS+N++I+    +   + AL  F ++    +     T+++++++CA +GSL LG+ 
Sbjct: 616 DRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRA 675

Query: 247 IHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ 306
           +H    K    + V  N  L+DM++KCG L+DA+  F+ M  K   +W+++I AY   G 
Sbjct: 676 LHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGL 735

Query: 307 GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG 366
              +I +F EM    VSPD  +   +L+AC+    +D+G +    +R K  +   +    
Sbjct: 736 YDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIR-KNNMALCLPVSN 794

Query: 367 CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408
            ++D+  + G ++EAY    ++P+K   + W T++   S ++
Sbjct: 795 ALMDMYAKCGSMEEAYLVFSQIPVKDI-VSWNTMIGGYSKNS 835



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 96/235 (40%), Gaps = 40/235 (17%)

Query: 27   LLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
            LLP C S   L   + IH   ++    ++L+V   LI+   +     S+ HA LLFD IP
Sbjct: 861  LLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVK---CGSLVHARLLFDMIP 917

Query: 84   EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG------- 136
            E D++ +  M  G         AI  F ++  +G+ PD+ +F S+L AC+  G       
Sbjct: 918  EKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWG 977

Query: 137  ------AEALEEGKQLH--CFAIKLGLNSNLYVCTTLIN-------------LYAECS-- 173
                  +E   E K  H  C    L    NL     LI              L   C   
Sbjct: 978  FFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIH 1037

Query: 174  -DVEAARRIFENIS--EPCVVSYNAIIT-AYARSSRPNEALSLFRELQERNLKPT 224
             DVE A ++ E++   EP    Y  ++   YA + +  E   L   + +R LK +
Sbjct: 1038 HDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKS 1092


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 214/567 (37%), Positives = 322/567 (56%), Gaps = 39/567 (6%)

Query: 27  LLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPD 86
           LL  C SFR +KQ+HA  I T L        KL+     +   + + +AH++FD  P+PD
Sbjct: 7   LLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLK--QLSSIFAPISYAHMVFDHFPQPD 64

Query: 87  IVLFNTMARGYSRSKTPIRAIFL-FVELLNSG-LLPDDYSFPSLLKACACVGAEALEEGK 144
           + L+NT+ +  + S T     F  F  L+    L+P+ YSF    K C   G   LE G+
Sbjct: 65  LFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGS-GVGVLE-GE 122

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           Q+   AIKLGL +NL+V   LI +Y     V  AR++F+      + S+N +++ YAR  
Sbjct: 123 QVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLG 182

Query: 205 RPNEALSLFRELQERN-------------------------------LKPTDVTMLSALS 233
           + +EA  LF E+ E++                               + P + T+ S+L+
Sbjct: 183 KMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLA 242

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS--GKDT 291
           +CA L +LD G+W+H YIKK  +    ++   LIDM+AKCG L+ A  +F++     +  
Sbjct: 243 ACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKV 302

Query: 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYS 351
             W+AMI  +A HG+  ++I +FE+M   +VSP+++TF+ LL ACSH   V+EG  YF S
Sbjct: 303 WPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFES 362

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
           M   Y + P ++HYGC+VDLLGRAGRL EA   I  + +     +W  LLS+C  H +  
Sbjct: 363 MASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKIHKDAE 422

Query: 412 LAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVN 471
           + ++V + + ELD +H G +V+L+N+ +  G W +   LR+ + + G  K PGCSSIE+N
Sbjct: 423 MGERVGKIVKELDPNHLGCHVLLANIYSLTGNWNEARTLREKIAESGKKKTPGCSSIELN 482

Query: 472 NVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHS 531
            +  +F  GD  H  +  L   LDE++ +LK+ GY+P++  V     ++E++E AL  HS
Sbjct: 483 GMFHQFLVGDRSHPQTKQLYLFLDEMITKLKIAGYIPESGEVLLDIDDNEDRETALLKHS 542

Query: 532 EKLAITFGLLNTPPGTTIRVVKNLRVC 558
           EKLAI FGL+NT P T IR+VKNLRVC
Sbjct: 543 EKLAIAFGLMNTTPKTPIRIVKNLRVC 569


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/520 (39%), Positives = 307/520 (59%), Gaps = 45/520 (8%)

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
           HAH+L  R  +P  ++ + M   Y+ S     ++ +F        + D ++FP +LK+  
Sbjct: 93  HAHMLL-RGLQPTALVGSKMVAFYASSGDIDSSVSVF------NGIGDYFTFPFVLKSS- 144

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
            V   ++  GK +H   +++GL  +LYV T+LI LY +C ++  A ++F+N++   V S+
Sbjct: 145 -VELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSW 203

Query: 194 NAI-------------------------------ITAYARSSRPNEALSLFREL--QERN 220
           NA+                               I+ Y++S    +ALSLF E+  ++  
Sbjct: 204 NALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSG 263

Query: 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV 280
           ++P  VT++S L +CA L +L+ G+ IHE   + GL+    V  AL  M+AKCG L DA 
Sbjct: 264 VRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDAR 323

Query: 281 SVFD--NMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           + FD  N + K+  AW+ MI AYA++G G +++  F EM++A + PD+ITF GLL  CSH
Sbjct: 324 NCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSH 383

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
           +GLVD G  YF  M   Y I P ++HY C+ DLLGRAGRL EA + + E+P+ + P +W 
Sbjct: 384 SGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWG 443

Query: 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458
           +LL++C  H NL +A+    ++F L+  + G+YV+LSN+ A AGRW++VD LR ++K +G
Sbjct: 444 SLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQG 503

Query: 459 VLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDM 518
             K PGCS IE+N     F  GD  H    ++   L+ L +++K  GY PDTS V H D+
Sbjct: 504 TKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLH-DI 562

Query: 519 EDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +EEKE  L  HSEKLA+ FG+LNTP  T +RV KNLR+C
Sbjct: 563 SEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRIC 602



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 151/301 (50%), Gaps = 36/301 (11%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLI-----------------NFCTQNPTT----------- 69
           K +H + ++  LQ DL V T LI                 N   ++ ++           
Sbjct: 154 KCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKS 213

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL--NSGLLPDDYSFPS 127
             ++ A  +F+R+P  +IV + TM  GYS+S    +A+ LF E++  +SG+ P+  +  S
Sbjct: 214 GCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMS 273

Query: 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE--NI 185
           +L ACA +    LE G+Q+H  A ++GLNSN  V   L  +YA+C  +  AR  F+  N 
Sbjct: 274 VLPACAQL--STLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNR 331

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG- 244
           +E  ++++N +ITAYA      +A+S FRE+ +  ++P D+T    LS C+  G +D+G 
Sbjct: 332 NEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGL 391

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYAT 303
           K+ +     Y ++  V+    + D+  + GRL +A  +   M        W +++ A   
Sbjct: 392 KYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRK 451

Query: 304 H 304
           H
Sbjct: 452 H 452


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/537 (37%), Positives = 313/537 (58%), Gaps = 6/537 (1%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           P  L    R ++ +    +H++ +K    +D+  +T L++  +    +  +  AH +F+ 
Sbjct: 115 PLVLKACTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYS---GSGRLNDAHKVFEE 171

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           IPE  +V +  +  GY+ +     AI LF +++  G+ PD Y    +L AC  VG   L+
Sbjct: 172 IPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGD--LD 229

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G+ +     ++ +  N +V TTL+NLYA+C  +E AR +F+++ E  +V+++ +I  YA
Sbjct: 230 SGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYA 289

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
            +S P E +  F ++ + NLKP   +++  LSSCA LG+LDLG+W    I ++     + 
Sbjct: 290 SNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLF 349

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           +  ALIDM+AKCG +     VF  M  KD    +A I   A +G    S  +F +  K  
Sbjct: 350 MANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLG 409

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           +SPD  TFLGLL  C H GL+ +G  +F ++   Y +   ++HYGCMVDL GRAG LD+A
Sbjct: 410 ISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDA 469

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
           YR I ++P++   I+W  LLS C    +  LA+ V++ +  L+  + G+YV LSN+ + +
Sbjct: 470 YRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVS 529

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           GRW++   +R +M  +G+ K+PG S IE+   V EF + D  H  S  +   L++L  E+
Sbjct: 530 GRWDEAAEVRDMMNRKGMKKIPGYSWIELEGTVHEFLADDKSHPLSDKIYAKLEDLGNEM 589

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +++G+VP T  V   D+EDEEKE  L +HSEKLA+ FGL++T  G  IRVVKNLRVC
Sbjct: 590 RLMGFVPTTEFVFF-DVEDEEKERVLGHHSEKLAVAFGLISTDHGQVIRVVKNLRVC 645



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 120/436 (27%), Positives = 222/436 (50%), Gaps = 14/436 (3%)

Query: 15  PKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQND---LNVLTKLINFCTQNPTTSS 71
           P   +      +L+   ++F  LKQ+H   I  HL +D   +N+L K   F  Q      
Sbjct: 7   PSSTSKVQQIKTLISVASTFNHLKQVHVSLIHHHLHHDTFLVNLLLKRTLFFRQT----- 61

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
             ++ LLF     P+I L+NT+  G+  +      + LF+ +   GL    ++FP +LKA
Sbjct: 62  -HYSFLLFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKA 120

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C       L  G  LH   +K G N ++   T+L+++Y+    +  A ++FE I E  VV
Sbjct: 121 CTRASNRKL--GIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVV 178

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           ++ A+ + Y  + +  EA+ LF+++ E  ++P    ++  LS+C  +G LD G+WI +++
Sbjct: 179 TWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHM 238

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
           ++  + K   V T L++++AKCG+++ A SVFD+M  KD   WS MI  YA++    + I
Sbjct: 239 EEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGI 298

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
             F +M++  + PD+ + +G L +C+  G +D G  +  S+ D++  +  +     ++D+
Sbjct: 299 EFFLQMLQENLKPDQFSIVGFLSSCASLGALDLG-EWGISLIDRHEFLTNLFMANALIDM 357

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS-HGGD 430
             + G +   +    E+  K   I+    +S  + + ++ L+  V  +  +L  S  G  
Sbjct: 358 YAKCGAMARGFEVFKEMKEKDIVIM-NAAISGLAKNGHVKLSFAVFGQTEKLGISPDGST 416

Query: 431 YVILSNLCARAGRWED 446
           ++ L   C  AG  +D
Sbjct: 417 FLGLLCGCVHAGLIQD 432


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/528 (36%), Positives = 314/528 (59%), Gaps = 42/528 (7%)

Query: 64  TQNPTTSSMEHAHLLFDR-IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDD 122
           + NP  ++      LF++ + + ++  +N++    +RS   + A+  F  +    L P+ 
Sbjct: 23  SNNPNLTT------LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNR 76

Query: 123 YSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR--- 179
            +FP  +K+C+ +    L  G+Q H  A+  G   +L+V + L+++Y++C ++  AR   
Sbjct: 77  STFPCAIKSCSAL--LDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLF 134

Query: 180 ----------------------------RIFENISEPCVVSYNAIITAYARSSRPNEALS 211
                                       R+F+ ++E  V+S+N+II  YA++    E++ 
Sbjct: 135 DEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESME 194

Query: 212 LF-RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270
           +F R +++  +    VT+ + L +CA  GS  LGK IH+ + K GL+  V V T++IDM+
Sbjct: 195 IFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMY 254

Query: 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
            KCG+++ A   FD M  K+ ++WSAM+  Y  HG   +++ +F EM  A V P+ ITF+
Sbjct: 255 CKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFV 314

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
            +L ACSH GL++EGW++F +M  ++ + PG++HYGCMVDLLGRAG L EA+  I  + +
Sbjct: 315 SVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKL 374

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL 450
           +   ++W  LL +C  H N+ L +    ++FELD  + G YV+LSN+ A AGRWEDV+ +
Sbjct: 375 RPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERM 434

Query: 451 RKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT 510
           R LMK+ G++K PG S +++   V  F  GD  H     + + L++L  +L+ VGYVPD 
Sbjct: 435 RILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDM 494

Query: 511 SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           + V H D+  EEKE+ LR HSEKLA+ FG++NT PGTTI ++KNLRVC
Sbjct: 495 TSVLH-DVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVC 541



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 131/251 (52%), Gaps = 8/251 (3%)

Query: 57  TKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS 116
           T +I    QN        A  +FD + E D++ +N++   Y+++     ++ +F  ++  
Sbjct: 146 TSMITGYVQNDDA---HRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKD 202

Query: 117 GLLP-DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDV 175
           G +  +  +  ++L ACA  G++ L  GK +H   IK+GL SN++V T++I++Y +C  V
Sbjct: 203 GEINYNAVTLSAVLLACAHSGSQRL--GKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKV 260

Query: 176 EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSC 235
           E AR+ F+ + E  V S++A++  Y       EAL +F E+    +KP  +T +S L++C
Sbjct: 261 EMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAAC 320

Query: 236 ALLGSLDLG-KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQA 293
           +  G L+ G  W      ++ ++  V+    ++D+  + G L +A  +   M  + D   
Sbjct: 321 SHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVV 380

Query: 294 WSAMIVAYATH 304
           W A++ A   H
Sbjct: 381 WGALLGACRMH 391


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/566 (35%), Positives = 333/566 (58%), Gaps = 18/566 (3%)

Query: 1   MATTPSPPITQSPPPKLCTNTPNAL----SLLPRCT---SFRGLKQIHAVTIKTHLQNDL 53
            A +P PP T    P+L + +P+A     S+L  C    S R  +Q+H   + + L  D 
Sbjct: 42  FAASPPPPSTN---PRLAS-SPHAYHHHTSILQSCVASGSLRAGRQLHGRLLVSGLGPDT 97

Query: 54  NVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVEL 113
            + TKL++          + HA  LFD +P+ ++ L+N + R Y+R      A+ L+  +
Sbjct: 98  VLSTKLVDLYA---ACGQVGHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRGM 154

Query: 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
           +  G+ PD++++P +LKACA +    LE G+++H          +++VC  ++++YA+C 
Sbjct: 155 VEHGVEPDNFTYPLVLKACAAL--LDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCG 212

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
            V+ AR +F+ I+    V +N++I AY ++ RP EAL+L R++    + PT  T++SA+S
Sbjct: 213 CVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVS 272

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
           + A   +L  G+ +H +  + G     K+ T+L+DM+AK G +  A  +F+ +  ++  +
Sbjct: 273 AAADAAALPRGRELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVS 332

Query: 294 WSAMIVAYATHGQGHKSILMFEEMM-KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
           W+AMI  Y  HG   +++ +F +M   AQV+PD ITF+G+L AC+H G+V+E   +FY M
Sbjct: 333 WNAMICGYGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYLM 392

Query: 353 RDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGL 412
            + Y I P ++HY C++D+LG  GR +EAY  I  + I+    +W  LL+ C  H N+ L
Sbjct: 393 VNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIHKNVEL 452

Query: 413 AKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNN 472
            +  ++++ EL+    G+YV LSN+ A++G+WE    +RKLM +RG+ K+  CS IE+  
Sbjct: 453 GELALQKLIELEPEDAGNYVHLSNIYAQSGKWEKAARVRKLMTNRGLKKILACSWIELKG 512

Query: 473 VVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSE 532
               F  GD  H  S ++   L+ L   +   GYVPD   V H +++D+EK   +R HSE
Sbjct: 513 KTHGFLVGDASHPRSDEIYGELERLEGLMSDAGYVPDIIPVFH-NVDDDEKRNMVRSHSE 571

Query: 533 KLAITFGLLNTPPGTTIRVVKNLRVC 558
           +LAI FGL++TPPGT + V KNLRVC
Sbjct: 572 RLAIAFGLISTPPGTKLLVTKNLRVC 597


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/544 (37%), Positives = 323/544 (59%), Gaps = 11/544 (2%)

Query: 20  NTPNALSLLPRCTS---FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           ++   +SLL  CT    F     IH+ +IK  L+++L V  KLI+   +      +    
Sbjct: 246 DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAE---FGRLRDCQ 302

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +FDR+   D++ +N++ + Y  ++ P+RAI LF E+  S + PD  +  SL    + +G
Sbjct: 303 KVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLG 362

Query: 137 AEALEEGKQLHCFAIKLG-LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
              +   + +  F ++ G    ++ +   ++ +YA+   V++AR +F  +    V+S+N 
Sbjct: 363 D--IRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNT 420

Query: 196 IITAYARSSRPNEALSLFRELQERN-LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           II+ YA++   +EA+ ++  ++E   +     T +S L +C+  G+L  G  +H  + K 
Sbjct: 421 IISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKN 480

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
           GL   V V T+L DM+ KCGRL+DA+S+F  +   ++  W+ +I  +  HG G K++++F
Sbjct: 481 GLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLF 540

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
           +EM+   V PD ITF+ LL ACSH+GLVDEG   F  M+  YGI P +KHYGCMVD+ GR
Sbjct: 541 KEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGR 600

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
           AG+L+ A +FI  + ++    +W  LLS+C  H N+ L K   E +FE++  H G +V+L
Sbjct: 601 AGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLL 660

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
           SN+ A AG+WE VD +R +   +G+ K PG SS+EV+N V  F++G+  H    ++ + L
Sbjct: 661 SNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYREL 720

Query: 495 DELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
             L  +LKM+GYVPD   V   D+ED+EKE  L  HSE+LAI F L+ TP  TTIR+ KN
Sbjct: 721 TALQAKLKMIGYVPDHRFVLQ-DVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKN 779

Query: 555 LRVC 558
           LRVC
Sbjct: 780 LRVC 783



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 137/449 (30%), Positives = 227/449 (50%), Gaps = 44/449 (9%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP 85
           +L   CT+ +  K +HA  + +    ++ +  KL+N        +   H    FD I   
Sbjct: 59  TLFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHT---FDHIQNR 115

Query: 86  DIVLFNTMARGYSR---SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           D+  +N M  GY R   S   IR   LF  +L+SGL PD  +FPS+LKAC  V      +
Sbjct: 116 DVYAWNLMISGYGRAGNSSEVIRCFSLF--MLSSGLTPDYRTFPSVLKACRTV-----ID 168

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G ++HC A+K G   ++YV  +LI+LY+    V  AR +F+ +    + S+NA+I+ Y +
Sbjct: 169 GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQ 228

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
           S    EAL+L   L+  +     VT++S LS+C   G  + G  IH Y  K+GL+  + V
Sbjct: 229 SGNAKEALTLSNGLRAMD----SVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFV 284

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
           +  LID++A+ GRL D   VFD M  +D  +W+++I AY  + Q  ++I +F+EM  +++
Sbjct: 285 SNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRI 344

Query: 323 SPDEITFLGLLYACSHTGLVD-----EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
            PD +T + L    S  G +      +G    +++R  +  +  I     +V +  + G 
Sbjct: 345 QPDCLTLISLASILSQLGDIRACRSVQG----FTLRKGW-FLEDITIGNAVVVMYAKLGL 399

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG------GDY 431
           +D A    + LP  +  I W T++S  + +   G A + IE ++ + +  G      G +
Sbjct: 400 VDSARAVFNWLP-NTDVISWNTIISGYAQN---GFASEAIE-MYNIMEEEGEIAANQGTW 454

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVL 460
           V +   C++AG       LR+ MK  G L
Sbjct: 455 VSVLPACSQAGA------LRQGMKLHGRL 477


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/543 (38%), Positives = 310/543 (57%), Gaps = 15/543 (2%)

Query: 16  KLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           K CT  P+   +        GL  +H++ IKT    D+ V T L+   ++N     +  A
Sbjct: 109 KACTRLPHYFHV--------GL-SLHSLVIKTGFDWDVFVKTGLVCLYSKN---GFLTDA 156

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
             +FD IPE ++V +  +  GY  S     A+ LF  LL  GL PD ++   +L AC+ V
Sbjct: 157 RKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRV 216

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
           G   L  G+ +  +  + G   N++V T+L+++YA+C  +E ARR+F+ + E  VV ++A
Sbjct: 217 GD--LASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSA 274

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +I  YA +  P EAL +F E+Q  N++P    M+   S+C+ LG+L+LG W    +    
Sbjct: 275 LIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDE 334

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
                 + TALID +AKCG +  A  VF  M  KD   ++A+I   A  G    +  +F 
Sbjct: 335 FLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFG 394

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
           +M+K  + PD  TF+GLL  C+H GLVD+G  YF  M   + + P I+HYGCMVDL  RA
Sbjct: 395 QMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARA 454

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
           G L EA   I  +P+++  I+W  LL  C  H +  LA+ V++++ EL+  + G YV+LS
Sbjct: 455 GLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLS 514

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           N+ + + RW++ + +R  +  +G+ K+PGCS +EV+ VV EF  GD  H  S  + + L+
Sbjct: 515 NIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLE 574

Query: 496 ELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNL 555
            L K+L+  GY P T  V   D+E+EEKE  L  HSEKLA+ F L++T     IRVVKNL
Sbjct: 575 SLFKDLREAGYNPTTEFVLF-DVEEEEKEYFLGCHSEKLAVAFALISTGAKDVIRVVKNL 633

Query: 556 RVC 558
           RVC
Sbjct: 634 RVC 636



 Score =  201 bits (511), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 126/411 (30%), Positives = 214/411 (52%), Gaps = 9/411 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTT-SSMEHAHLLFDRIPEPDIVLFNTMARG 96
           KQ H + ++  L  D    T LIN   ++    ++ ++A ++F + P P+I L+NT+ RG
Sbjct: 20  KQCHCLLLRLGLHQD----TYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRG 75

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
              +     A+ ++  +   G  PD+++FP +LKAC  +       G  LH   IK G +
Sbjct: 76  MVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRL-PHYFHVGLSLHSLVIKTGFD 134

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            +++V T L+ LY++   +  AR++F+ I E  VVS+ AII  Y  S    EAL LFR L
Sbjct: 135 WDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGL 194

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
            E  L+P   T++  L +C+ +G L  G+WI  Y+++ G    V V T+L+DM+AKCG +
Sbjct: 195 LEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSM 254

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           ++A  VFD M  KD   WSA+I  YA++G   +++ +F EM +  V PD    +G+  AC
Sbjct: 255 EEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSAC 314

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           S  G ++ G N+   + D    +        ++D   + G + +A      +  K   ++
Sbjct: 315 SRLGALELG-NWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDC-VV 372

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELD-DSHGGDYVILSNLCARAGRWED 446
           +  ++S  +   ++G A  V  ++ ++     G  +V L   C  AG  +D
Sbjct: 373 FNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDD 423



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 166/343 (48%), Gaps = 12/343 (3%)

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS 186
           S LK C   G ++L + KQ HC  ++LGL+ + Y+   L+      +  + A  +F    
Sbjct: 3   SELKKCFAWGLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTP 62

Query: 187 EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS-LDLGK 245
            P +  YN +I     +    +A+S++  +++    P + T    L +C  L     +G 
Sbjct: 63  HPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGL 122

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
            +H  + K G D  V V T L+ +++K G L DA  VFD +  K+  +W+A+I  Y   G
Sbjct: 123 SLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESG 182

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKH 364
              +++ +F  +++  + PD  T + +LYACS  G +  G W   Y MR+  G V  +  
Sbjct: 183 CFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGY-MRES-GSVGNVFV 240

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL- 423
              +VD+  + G ++EA R  D + ++   + W  L+   +S+   G+ K+ ++  FE+ 
Sbjct: 241 ATSLVDMYAKCGSMEEARRVFDGM-VEKDVVCWSALIQGYASN---GMPKEALDVFFEMQ 296

Query: 424 -DDSHGGDYVILS--NLCARAGRWEDVDYLRKLMKDRGVLKVP 463
            ++     Y ++   + C+R G  E  ++ R LM     L  P
Sbjct: 297 RENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNP 339


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/537 (37%), Positives = 324/537 (60%), Gaps = 11/537 (2%)

Query: 27  LLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           LL  C + R +++   +HA  IKT     + + T+LI   T+        H   +FD + 
Sbjct: 16  LLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARH---VFDEMR 72

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
           E ++V +  M  GYS+      A+ LFV++L S   P++++F ++L +C   G    E G
Sbjct: 73  ERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCT--GFSGFELG 130

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
           +Q+H    K    ++++V ++L+++YA+   +  AR +FE + E  VVS  AII+ YA+ 
Sbjct: 131 RQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQL 190

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
               EAL LF  LQ   +    VT  S L++ + L +LD GK +H ++ +  L  YV + 
Sbjct: 191 GLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQ 250

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA-QV 322
            +LIDM++KCG L+ A  +F+NM  +   +W+AM+V Y+ HG+G + + +F+ M +  +V
Sbjct: 251 NSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKV 310

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG-IVPGIKHYGCMVDLLGRAGRLDEA 381
            PD +TFL +L  CSH GL D+G   F  M +    I  GI+HYGC++DLLGRAGR++EA
Sbjct: 311 KPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEA 370

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
           +  I ++P + T  +W +LL +C  H+N  + + V  R+ E++  + G+YVILSNL A A
Sbjct: 371 FELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASA 430

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           GRWEDV  +R+LM ++ V+K PG S IE++  +  F++ D  H    ++   + EL+ + 
Sbjct: 431 GRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVRELLVKF 490

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K  GYVPD S V + D+++E+KE  L  HSEKLA+ FGL++T  G  +RV+KNLR+C
Sbjct: 491 KESGYVPDQSCVLY-DVDEEQKEKILLGHSEKLALAFGLISTSEGVPLRVIKNLRIC 546


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/552 (35%), Positives = 312/552 (56%), Gaps = 20/552 (3%)

Query: 12  SPPPKLCTNTPNALSLLPRCTSFR---GLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPT 68
           +P P+L        S++  C  F+   G + IHA   ++ L  D  +L  LI+   +   
Sbjct: 57  APTPRLYH------SIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGA 110

Query: 69  TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSL 128
            S   H   +FD++P  D+V +  +  GY+++  P  AI L  ++L +   P+ ++F SL
Sbjct: 111 VSDARH---VFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSL 167

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP 188
           LKA    G  ++  G+Q+H  A+K   + ++YV + L+++YA C  ++ A  +F+ +   
Sbjct: 168 LKATGACGGCSI--GEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSK 225

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
             VS+NA+I  +AR +     L  F E+Q      T  T  S  S+ A +G+L+ G+W+H
Sbjct: 226 NEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVH 285

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
            ++ K G      V   ++ M+AK G + DA  VFD M  +D   W+ M+ A A +G G 
Sbjct: 286 AHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGK 345

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
           +++  FEE+ K  +  ++ITFL +L ACSH GLV EG +YF  M+D Y + P I HY   
Sbjct: 346 EAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKD-YNVQPEIDHYVSF 404

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428
           VDLLGRAG L EA  F+ ++P++ T  +W  LL +C  H N  + +   + +FELD    
Sbjct: 405 VDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDT 464

Query: 429 GDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYST 488
           G  V+L N+ A  G+W D   +RK+MK  GV K P CS +++ N V  F + D  H  S 
Sbjct: 465 GPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSG 524

Query: 489 DLQKALDELVKELKMVGYVPDTS--LVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPG 546
           D+ +  +E+   +K  GYVP+T+  L+H   + ++E+E  L+YHSEK+A+ F L+N P G
Sbjct: 525 DIYRMWEEINMRIKKAGYVPNTAHVLLH---INEQERETKLKYHSEKIALAFALINMPAG 581

Query: 547 TTIRVVKNLRVC 558
            +IR++KN+R+C
Sbjct: 582 ASIRIMKNIRIC 593



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 3/225 (1%)

Query: 179 RRIFENISEPCV-VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL 237
           R I    S+P    ++ A+  ++  S   +  L     L    L PT     S +++CA 
Sbjct: 13  RYIHRRTSKPYTSAAHRAVPISFPSSPASSTGLRELDLLHAGELAPTPRLYHSIIAACAQ 72

Query: 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297
             +L   + IH ++ +  L     +  +LI M+ KCG + DA  VFD M  +D  +W+ +
Sbjct: 73  FKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDVVSWTYL 132

Query: 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG 357
           I  YA +    ++I +  +M++A+  P+  TF  LL A    G    G    +++  KY 
Sbjct: 133 IAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIG-EQMHALAVKYN 191

Query: 358 IVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
               +     ++D+  R  ++D A    D L +    + W  L++
Sbjct: 192 WDEDVYVGSALLDMYARCEQMDMAIMVFDRL-VSKNEVSWNALIA 235


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/520 (38%), Positives = 296/520 (56%), Gaps = 34/520 (6%)

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
            +++ A  +FD   + ++VL+NT+   Y R       + +  E+L  G  PD  +  S +
Sbjct: 289 GAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAV 348

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC----------------- 172
            AC+ +  + +  GK  H + ++ GL     VC  +IN+Y +C                 
Sbjct: 349 SACSEL--DDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKT 406

Query: 173 --------------SDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
                          D+E+A +IF  + +  +VS+N +I A  + S   EA+ LFR +Q 
Sbjct: 407 RVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQS 466

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
             +    VTM+   S+C  LG+LDL KWIH YIKK  +   + + TAL+DM A+CG    
Sbjct: 467 EGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQS 526

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A+ VF+ M  +D  AW+A I A A  G G  +I +F+EM++  + PD + F+ LL A SH
Sbjct: 527 AMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSH 586

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
            GLV++GW+ F SM+D YGI P   HYGCMVDLLGRAG L EA   I+ + ++   ++W 
Sbjct: 587 GGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWG 646

Query: 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458
           +LL++C  H N+ +A    ERI ELD    G +V+LSN+ A AGRW+DV  +R  +K++G
Sbjct: 647 SLLAACRVHKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKG 706

Query: 459 VLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDM 518
             K+PG SSIE+N  + EF +GD  H   T ++  L E+   L+ +GYVPD + V   D+
Sbjct: 707 AHKMPGSSSIEINGKIFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYVPDLTNVLL-DV 765

Query: 519 EDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            ++EKE  L  HSEKLAI F L++T  G  IRV KNLR+C
Sbjct: 766 NEKEKEYLLSRHSEKLAIAFALISTGQGMPIRVAKNLRIC 805



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 121/410 (29%), Positives = 215/410 (52%), Gaps = 16/410 (3%)

Query: 5   PSPPITQSPPPK-----LCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKL 59
           P+ P + + P +     L  +  +      +C +   LKQ+H+   K  L +    LT L
Sbjct: 12  PATPTSVALPNQNELKILTKHRSSPTGSFKKCKTMTELKQLHSQITKNGLNHHPLSLTNL 71

Query: 60  INFCTQNPTTSSMEHAHLLFDRIPEPDIVL-----FNTMARGYSRSKTPIRAIFLFVELL 114
           I+ CT+  T  S+E+A    +   E + ++     F+++ RG+S      +AI +F +L+
Sbjct: 72  ISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFSSLIRGFSACGLGYKAIVVFRQLM 131

Query: 115 NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174
             G +PD+++FP +L AC    + AL EG Q+H   +K+G   +++V  +LI+ Y EC +
Sbjct: 132 CMGAVPDNFTFPFVLSAC--TKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGE 189

Query: 175 VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSS 234
           ++  RR+F+ +SE  VVS+ ++I  YA+     EA+SLF E+ E  ++P  VTM+  +S+
Sbjct: 190 IDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISA 249

Query: 235 CALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAW 294
           CA L  L LG+ +   I +  L+    +  AL+DM+ KCG +D A  +FD    K+   +
Sbjct: 250 CAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLY 309

Query: 295 SAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSMR 353
           + ++  Y   G   + + +  EM+K    PD IT L  + ACS    V  G W + Y +R
Sbjct: 310 NTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLR 369

Query: 354 DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
           +  G+         ++++  + G+ + A R  D + +  T + W +L++ 
Sbjct: 370 N--GLEGWDNVCNAIINMYMKCGKQEMACRVFDRM-LNKTRVSWNSLIAG 416



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 112/469 (23%), Positives = 216/469 (46%), Gaps = 43/469 (9%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           P  LS   +  +     Q+H   +K   + D+ V   LI+F  +      M     +FD+
Sbjct: 143 PFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRR---VFDK 199

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           + E ++V + ++  GY++      A+ LF E++  G+ P+  +   ++ ACA +  + L+
Sbjct: 200 MSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKL--QDLQ 257

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G+Q+     +L L  N  +   L+++Y +C  ++ AR+IF+   +  +V YN I++ Y 
Sbjct: 258 LGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYV 317

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           R     E L++  E+ +   +P  +TMLSA+S+C+ L  +  GKW H Y+ + GL+ +  
Sbjct: 318 RQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDN 377

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH------------- 308
           V  A+I+M+ KCG+ + A  VFD M  K   +W+++I  +  +G                
Sbjct: 378 VCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSD 437

Query: 309 ------------------KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVD-EGWNYF 349
                             ++I +F  M    ++ D++T +G+  AC + G +D   W + 
Sbjct: 438 LVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHG 497

Query: 350 YSMRDKYGIVPGIKHYG-CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408
           Y  +     +    H G  +VD+  R G    A +  +++ +K     W   + + +   
Sbjct: 498 YIKKKD---IHFDMHLGTALVDMFARCGDPQSAMQVFNKM-VKRDVSAWTAAIGAMAMEG 553

Query: 409 NLGLAKQVIERIFELD-DSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
           N   A ++ + + +      G  +V L    +  G  E   ++ + MKD
Sbjct: 554 NGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKD 602


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/545 (37%), Positives = 320/545 (58%), Gaps = 9/545 (1%)

Query: 17  LCTNTPNALSLLPRCT--SFRGL-KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSME 73
           +C N     S L  C   + R L +Q+H+  IK  + +D  +   LI+  ++    +SM+
Sbjct: 208 MCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSK---CNSMD 264

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
            A L+F  +PE D++ +N +  G+S+++    A  LF  +   G+  +  +  ++LK+ A
Sbjct: 265 DARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIA 324

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
            + A  +   +Q+H  ++K G   + YV  +LI+ Y +C  VE A R+FE      +V +
Sbjct: 325 ALQANYM--CRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLF 382

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
            +++TAYA+  +  EAL L+ E+Q+R +KP      S L++CA L + + GK +H +I K
Sbjct: 383 TSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILK 442

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
           +G    +    +L++M+AKCG ++DA   F  +  +   +WSAMI   A HG G +++ +
Sbjct: 443 FGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQL 502

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           F++M+K  V P+ IT + +L AC+H GLV E  +YF SM+  +GI P  +HY CM+DLLG
Sbjct: 503 FKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLG 562

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI 433
           RAG+L+ A   ++++P ++  ++W  LL +   H N+ L +Q  E +  L+    G +V+
Sbjct: 563 RAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVL 622

Query: 434 LSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKA 493
           L+N+ A  G W+ V  +R+LMKD  V K PG S +EV + V  F  GD  HS ST++   
Sbjct: 623 LANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSRSTEIYAK 682

Query: 494 LDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVK 553
           LDEL   LK  GYVP   +  H D+E  EKE  L +HSEKLA+ FGL+ TPPG  IRV K
Sbjct: 683 LDELSDLLKKAGYVPMVEIDLH-DVERSEKEQLLYHHSEKLAVAFGLIATPPGAPIRVKK 741

Query: 554 NLRVC 558
           NLR+C
Sbjct: 742 NLRIC 746



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/474 (26%), Positives = 223/474 (47%), Gaps = 46/474 (9%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  CT  + L   KQ+H + + T   +D  V   L+    +         A  LFD I
Sbjct: 15  SVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAK---CGGFGDARSLFDAI 71

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           P+  +V +N +   Y  S     A+ LF +++ SG+ P+++S  S++  C   G E   +
Sbjct: 72  PDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVC--TGLEDSVQ 129

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G+++H + IKLG +S+ +    L+++YA+   +E A  +F+ I++P +VS+NAII     
Sbjct: 130 GRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVL 189

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
               + AL L RE+ +  + P   T+ SAL +CA +   +LG+ +H  + K  +     +
Sbjct: 190 HEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFL 249

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
              LIDM++KC  +DDA  VF  M  +D  AW+A+I  ++ + +  ++  +F  M    +
Sbjct: 250 GVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGI 309

Query: 323 SPDEITFLGLL---------YACS--HTGLVDEGWNY----FYSMRDKYGIVPGIKH--- 364
             ++ T   +L         Y C   H   +  G+ +      S+ D YG    ++    
Sbjct: 310 GFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATR 369

Query: 365 ------------YGCMVDLLGRAGRLDEAYRFIDELP---IKSTPILWRTLLSSCSSHNN 409
                       +  +V    + G+ +EA R   E+    IK    +  +LL++C+S + 
Sbjct: 370 VFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSA 429

Query: 410 LGLAKQVIERIFE---LDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460
               KQV   I +   + D   G+ ++  N+ A+ G  ED       +  RG++
Sbjct: 430 YEQGKQVHVHILKFGFMSDIFAGNSLV--NMYAKCGSIEDASCAFSRIPVRGIV 481



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 152/291 (52%), Gaps = 4/291 (1%)

Query: 117 GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVE 176
           G+  ++++FPS+LKAC     + L  GKQ+H   +  G +S+ +V  +L+ LYA+C    
Sbjct: 5   GIKCNEFAFPSVLKACTVT--KDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFG 62

Query: 177 AARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236
            AR +F+ I +  VVS+NA+ + Y  S    EA+SLF ++    ++P + ++ S ++ C 
Sbjct: 63  DARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCT 122

Query: 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSA 296
            L     G+ IH Y+ K G D       AL+DM+AK G L+DA SVFD ++  D  +W+A
Sbjct: 123 GLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNA 182

Query: 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKY 356
           +I     H   H+++ +  EM K+ + P+  T    L AC+   L + G     S+    
Sbjct: 183 IIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMD 242

Query: 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
                    G ++D+  +   +D+A R + +L  +   I W  ++S  S +
Sbjct: 243 MGSDSFLGVG-LIDMYSKCNSMDDA-RLVFKLMPERDMIAWNAVISGHSQN 291


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 214/588 (36%), Positives = 321/588 (54%), Gaps = 72/588 (12%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           L QIHA     +L ++  V+T+LI   + + +  S+++A  +F     P++ +FN + RG
Sbjct: 56  LHQIHAQIFLHNLFSNSRVVTQLI---SSSCSLKSLDYALSIFRCFDHPNLFVFNALIRG 112

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
            + +     ++  FV +L   + PD  + P +LK+ A +    L  G+ LH   +KLGL 
Sbjct: 113 LAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGL--GRCLHGGVMKLGLE 170

Query: 157 SNLYVCTTLINLYA-----------------------------------ECSDVEAARRI 181
            + +V  +L+++Y                                    +  D+  A  +
Sbjct: 171 FDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASL 230

Query: 182 FENISEPCVVSYNAIITAYARSS---RPNE----------------------------AL 210
           FE + E    S+N++I  + R+    R  E                            AL
Sbjct: 231 FEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKAL 290

Query: 211 SLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270
           S+F  + E  ++P D+T++SAL +C  +G+L +G+ IH Y+   G      + TAL+DM+
Sbjct: 291 SMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMY 350

Query: 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           AKCG +  A  VF    GKD   WS MI  +A HG   +++  F +M  A ++PDE+ FL
Sbjct: 351 AKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFL 410

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
            +L ACSH+G VD+G N+F SMR  Y I P +KHY  +VDLLGRAGRLDEA  FI  +PI
Sbjct: 411 AILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPI 470

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL 450
               ++W  L  +C +H N+ +A+   E++ +L+  H G YV LSN+ A  GRWEDV+ +
Sbjct: 471 NPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERV 530

Query: 451 RKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT 510
           R LMK+RGV K PG S IEV   V  F +GD  H  + ++   L+E+    K  GY+P+T
Sbjct: 531 RTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPET 590

Query: 511 SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           + V H ++E+EEKE AL  HSEKLA+ FGL++T PG+TIR+VKNLRVC
Sbjct: 591 AWVLH-NIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVC 637



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 138/354 (38%), Gaps = 74/354 (20%)

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
            +  L +  Q+H       L SN  V T LI+       ++ A  IF     P +  +NA
Sbjct: 49  ASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNA 108

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +I   A +SR   ++S F  +   +++P  +T+   L S A L  + LG+ +H  + K G
Sbjct: 109 LIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLG 168

Query: 256 LDKYVKVNTALIDMHAKCGR-----------------------------------LDDAV 280
           L+    V  +L+DM+ K G                                    L  A 
Sbjct: 169 LEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAA 228

Query: 281 SVFDNMSGKDTQAWSAMI------------------------VAYAT-------HGQGHK 309
           S+F+ M  ++  +W+++I                        V++ T       +G   K
Sbjct: 229 SLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEK 288

Query: 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG---WNYFYSMRDKYGIVPGIKHYG 366
           ++ MF  M++  V P+++T +  L AC+  G +  G    NY  S  + + +  GI    
Sbjct: 289 ALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSS--NGFQLNRGIG--T 344

Query: 367 CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
            +VD+  + G +  A R   E   K   + W  ++   + H     A Q   ++
Sbjct: 345 ALVDMYAKCGNIKSASRVFVETKGKDL-LTWSVMIWGWAIHGCFDQALQCFVKM 397


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/542 (37%), Positives = 317/542 (58%), Gaps = 9/542 (1%)

Query: 20  NTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N  + LS+L  C++   L   K +HA  + T L +D+ V T LI          S+E A 
Sbjct: 262 NRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYM---GCGSIEGAR 318

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +FD++   D+V +  M RGY+ +     A  LF  +   G+ PD  ++  ++ ACA   
Sbjct: 319 RVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACAS-- 376

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
           +  L   +++H   ++ G  ++L V T L+++YA+C  ++ AR++F+ +S   VVS++A+
Sbjct: 377 SADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAM 436

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           I AY  +    EA   F  ++  N++P  VT ++ L++C  LG+LDLG  I+    K  L
Sbjct: 437 IGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADL 496

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
             ++ V  ALI+M+ K G ++ A  +F+NM  +D   W+ MI  Y+ HG   +++ +F+ 
Sbjct: 497 VSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDR 556

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M+K +  P+ +TF+G+L ACS  G V+EG  +F  + D  GIVP ++ YGCMVDLLGRAG
Sbjct: 557 MLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAG 616

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSN 436
            LDEA   I+ +P+K    +W TLL++C  + NL +A++  ER    +   G  YV LS+
Sbjct: 617 ELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSH 676

Query: 437 LCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDE 496
           + A AG WE+V  +RK+M+ RGV K  GC+ IEV   +  F   D  H  + ++   L  
Sbjct: 677 MYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRSHPQAGEIYAELAR 736

Query: 497 LVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLR 556
           L+  +K  GY+P T  V H ++ ++EKE A+ YHSEKLAI +G+L+ P G  IR+ KNLR
Sbjct: 737 LMTAIKREGYIPVTQNVLH-NVGEQEKEEAISYHSEKLAIAYGVLSLPSGAPIRIFKNLR 795

Query: 557 VC 558
           VC
Sbjct: 796 VC 797



 Score =  228 bits (580), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 143/449 (31%), Positives = 232/449 (51%), Gaps = 15/449 (3%)

Query: 25  LSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           L +L  C+S  GLK   + HA  IK    +D  + T L++   +     SM+ A  +FD 
Sbjct: 166 LIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKG---GSMDGARQVFDG 222

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           + + D+  FN M  GY++S    +A  LF  +   G  P+  SF S+L  C+    EAL 
Sbjct: 223 LYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCST--PEALA 280

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            GK +H   +  GL  ++ V T LI +Y  C  +E ARR+F+ +    VVS+  +I  YA
Sbjct: 281 WGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYA 340

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
            +S   +A  LF  +QE  ++P  +T +  +++CA    L L + IH  + + G    + 
Sbjct: 341 ENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLL 400

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V+TAL+ M+AKCG + DA  VFD MS +D  +WSAMI AY  +G G ++   F  M +  
Sbjct: 401 VDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNN 460

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           V PD +T++ LL AC H G +D G    Y+   K  +V  I     ++++  + G ++ A
Sbjct: 461 VEPDVVTYINLLNACGHLGALDLGME-IYTQAIKADLVSHIPVGNALINMNVKHGSIERA 519

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF-ELDDSHGGDYVILSNLCAR 440
            R+I E  ++   + W  ++   S H N   A  + +R+  E    +   +V + + C+R
Sbjct: 520 -RYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSR 578

Query: 441 AGRWED-VDYLRKLMKDRGV---LKVPGC 465
           AG  E+   +   L+  RG+   +++ GC
Sbjct: 579 AGFVEEGRRFFSYLLDGRGIVPTMELYGC 607



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/321 (29%), Positives = 163/321 (50%), Gaps = 14/321 (4%)

Query: 25  LSLLPRCTSFR--GL-KQIHAVTIKTHLQ---NDLNVLTKLINFCTQNPTTSSMEHAHLL 78
           + L  RC   R  GL KQ+    I++  Q    +LN L KL + C       +M  A   
Sbjct: 65  VKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSIC------GNMLEARQT 118

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
           FD +    +V +N +  GY++      A  LF ++++  + P   +F  +L AC+     
Sbjct: 119 FDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACS--SPA 176

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
            L+ GK+ H   IK+G  S+  + T L+++Y +   ++ AR++F+ + +  V ++N +I 
Sbjct: 177 GLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIG 236

Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
            YA+S    +A  LF  +Q+   KP  ++ LS L  C+   +L  GK +H      GL  
Sbjct: 237 GYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVD 296

Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
            V+V TALI M+  CG ++ A  VFD M  +D  +W+ MI  YA +     +  +F  M 
Sbjct: 297 DVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQ 356

Query: 319 KAQVSPDEITFLGLLYACSHT 339
           +  + PD IT++ ++ AC+ +
Sbjct: 357 EEGIQPDRITYIHIINACASS 377



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 147/290 (50%), Gaps = 4/290 (1%)

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           D  ++  L + C  +    L  GKQ+    I+ G   N+Y   TLI L++ C ++  AR+
Sbjct: 60  DSRTYVKLFQRCMMLRDAGL--GKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQ 117

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
            F+++    VV++NAII  YA+     EA +LFR++ +  ++P+ +T L  L +C+    
Sbjct: 118 TFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAG 177

Query: 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVA 300
           L LGK  H  + K G     ++ TAL+ M+ K G +D A  VFD +  +D   ++ MI  
Sbjct: 178 LKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGG 237

Query: 301 YATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP 360
           YA  G G K+  +F  M +    P+ I+FL +L  CS    +  G    ++     G+V 
Sbjct: 238 YAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWG-KAVHAQCMNTGLVD 296

Query: 361 GIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
            ++    ++ +    G ++ A R  D++ ++   + W  ++   + ++N+
Sbjct: 297 DVRVATALIRMYMGCGSIEGARRVFDKMKVRDV-VSWTVMIRGYAENSNI 345


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/527 (37%), Positives = 311/527 (59%), Gaps = 9/527 (1%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           + Q+H+V + +   + ++V   L+ +  +N      +        I   D V +N+M   
Sbjct: 157 IGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIR--DEVSWNSMIVA 214

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           Y + +   +A+ LF E++  GL  D ++  S+L A  C+  E L  G Q H   IK G +
Sbjct: 215 YGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCL--EDLSGGLQFHGQLIKTGFH 272

Query: 157 SNLYVCTTLINLYAECSD-VEAARRIFENISEPCVVSYNAIITAYARSSR-PNEALSLFR 214
            N +V + LI+LY++C   +   R++FE I+EP +V +N +++ Y+++     +AL  FR
Sbjct: 273 QNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFR 332

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL-DKYVKVNTALIDMHAKC 273
           ++Q    +P D + +  +S+C+ L S   GK IH    K  +    + V+ ALI M++KC
Sbjct: 333 QMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKC 392

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
           G L DA  +FD M+  +T + ++MI  YA HG   +S+ +F+ M++ Q++P  ITF+ +L
Sbjct: 393 GNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVL 452

Query: 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
            AC+HTG V+EGWNYF  M++K+ I P  +HY CM+DLLGRAG+L EA   I  +P    
Sbjct: 453 SACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPG 512

Query: 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKL 453
            I W +LL +C +H N+ LA +   ++ +L+ S+   YV+LSN+ A AGRWE+V  +RK 
Sbjct: 513 SIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKF 572

Query: 454 MKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT--S 511
           M+DRGV K PGCS IEV   +  F + D  H    ++ + L+E+  ++K  GYVPD   +
Sbjct: 573 MRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWA 632

Query: 512 LVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           LV        EKEI L +HSEKLA+ FGL++T  G  + VVKNLR+C
Sbjct: 633 LVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRIC 679



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 189/391 (48%), Gaps = 17/391 (4%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           AH LFD+IPEPD+V +NT+   Y+       A+ LF  +   GL  D ++  +++ AC C
Sbjct: 93  AHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITAC-C 151

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE-PCVVSY 193
                +    QLH  A+  G +S + V   L+  Y +  D++ A+R+F  +      VS+
Sbjct: 152 DDVGLI---GQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSW 208

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           N++I AY +    ++AL LF+E+  R L     T+ S L++   L  L  G   H  + K
Sbjct: 209 NSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIK 268

Query: 254 YGLDKYVKVNTALIDMHAKC-GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
            G  +   V + LID+++KC G + D   VF+ ++  D   W+ M+  Y+ + +  +  L
Sbjct: 269 TGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDAL 328

Query: 313 -MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG-IKHYGCMVD 370
             F +M      P++ +F+ ++ ACS+     +G    +S+  K  I    I     ++ 
Sbjct: 329 ECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQG-KQIHSLALKSDIPSNRISVDNALIA 387

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN----NLGLAKQVIERIFELDDS 426
           +  + G L +A R  D +   +T  L  ++++  + H     +L L + ++ER       
Sbjct: 388 MYSKCGNLQDARRLFDRMAEHNTVSL-NSMIAGYAQHGIEMESLHLFQWMLERQIAPTSI 446

Query: 427 HGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
               ++ + + CA  GR E+      +MK++
Sbjct: 447 ---TFISVLSACAHTGRVEEGWNYFNMMKEK 474



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 142/323 (43%), Gaps = 47/323 (14%)

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
           F  LLK C  +    L  GK LH   IK  +  + Y     I LY++C  +  AR+ F++
Sbjct: 11  FRHLLKTC--IAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQD 68

Query: 185 ISEPCV-------------------------------VSYNAIITAYARSSRPNEALSLF 213
           IS+P V                               VSYN +I+AYA       AL LF
Sbjct: 69  ISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLF 128

Query: 214 RELQERNLKPTDVTMLSALSSC----ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDM 269
             ++E  L     T+ + +++C     L+G L      H      G D YV VN AL+  
Sbjct: 129 SGMREMGLDMDXFTLSAVITACCDDVGLIGQL------HSVAVSSGFDSYVSVNNALLTY 182

Query: 270 HAKCGRLDDAVSVFDNMSG-KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT 328
           + K G LDDA  VF  M G +D  +W++MIVAY  H +G K++ +F+EM++  ++ D  T
Sbjct: 183 YGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFT 242

Query: 329 FLGLLYACSHTGLVD-EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
              +L A   T L D  G   F+    K G          ++DL  + G      R + E
Sbjct: 243 LASVLTA--FTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFE 300

Query: 388 LPIKSTPILWRTLLSSCSSHNNL 410
              +   +LW T++S  S +   
Sbjct: 301 EITEPDLVLWNTMVSGYSQNEEF 323


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/527 (37%), Positives = 311/527 (59%), Gaps = 9/527 (1%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           + Q+H+V + +   + ++V   L+ +  +N      +        I   D V +N+M   
Sbjct: 157 IGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIR--DEVSWNSMIVA 214

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           Y + +   +A+ LF E++  GL  D ++  S+L A  C+  E L  G Q H   IK G +
Sbjct: 215 YGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCL--EDLSGGLQFHGQLIKTGFH 272

Query: 157 SNLYVCTTLINLYAECSD-VEAARRIFENISEPCVVSYNAIITAYARSSR-PNEALSLFR 214
            N +V + LI+LY++C   +   R++FE I+EP +V +N +++ Y+++     +AL  FR
Sbjct: 273 QNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFR 332

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL-DKYVKVNTALIDMHAKC 273
           ++Q    +P D + +  +S+C+ L S   GK IH    K  +    + V+ ALI M++KC
Sbjct: 333 QMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKC 392

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
           G L DA  +FD M+  +T + ++MI  YA HG   +S+ +F+ M++ Q++P  ITF+ +L
Sbjct: 393 GNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVL 452

Query: 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
            AC+HTG V+EGWNYF  M++K+ I P  +HY CM+DLLGRAG+L EA   I  +P    
Sbjct: 453 SACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPG 512

Query: 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKL 453
            I W +LL +C +H N+ LA +   ++ +L+ S+   YV+LSN+ A AGRWE+V  +RK 
Sbjct: 513 SIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKF 572

Query: 454 MKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT--S 511
           M+DRGV K PGCS IEV   +  F + D  H    ++ + L+E+  ++K  GYVPD   +
Sbjct: 573 MRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWA 632

Query: 512 LVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           LV        EKEI L +HSEKLA+ FGL++T  G  + VVKNLR+C
Sbjct: 633 LVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRIC 679



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 189/391 (48%), Gaps = 17/391 (4%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           AH LFD+IPEPD+V +NT+   Y+       A+ LF  +   GL  D ++  +++ AC C
Sbjct: 93  AHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITAC-C 151

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE-PCVVSY 193
                +    QLH  A+  G +S + V   L+  Y +  D++ A+R+F  +      VS+
Sbjct: 152 DDVGLI---GQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSW 208

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           N++I AY +    ++AL LF+E+  R L     T+ S L++   L  L  G   H  + K
Sbjct: 209 NSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIK 268

Query: 254 YGLDKYVKVNTALIDMHAKC-GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
            G  +   V + LID+++KC G + D   VF+ ++  D   W+ M+  Y+ + +  +  L
Sbjct: 269 TGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDAL 328

Query: 313 -MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG-IKHYGCMVD 370
             F +M      P++ +F+ ++ ACS+     +G    +S+  K  I    I     ++ 
Sbjct: 329 ECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQG-KQIHSLALKSDIPSNRISVDNALIA 387

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN----NLGLAKQVIERIFELDDS 426
           +  + G L +A R  D +   +T  L  ++++  + H     +L L + ++ER       
Sbjct: 388 MYSKCGNLQDARRLFDRMAEHNTVSL-NSMIAGYAQHGIEMESLHLFQWMLERQIAPTSI 446

Query: 427 HGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
               ++ + + CA  GR E+      +MK++
Sbjct: 447 ---TFISVLSACAHTGRVEEGWNYFNMMKEK 474



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 142/323 (43%), Gaps = 47/323 (14%)

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
           F  LLK C  +    L  GK LH   IK  +  + Y     I LY++C  +  AR+ F++
Sbjct: 11  FRHLLKTC--IAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQD 68

Query: 185 ISEPCV-------------------------------VSYNAIITAYARSSRPNEALSLF 213
           IS+P V                               VSYN +I+AYA       AL LF
Sbjct: 69  ISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLF 128

Query: 214 RELQERNLKPTDVTMLSALSSC----ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDM 269
             ++E  L     T+ + +++C     L+G L      H      G D YV VN AL+  
Sbjct: 129 SGMREMGLDMDGFTLSAVITACCDDVGLIGQL------HSVAVSSGFDSYVSVNNALLTY 182

Query: 270 HAKCGRLDDAVSVFDNMSG-KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT 328
           + K G LDDA  VF  M G +D  +W++MIVAY  H +G K++ +F+EM++  ++ D  T
Sbjct: 183 YGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFT 242

Query: 329 FLGLLYACSHTGLVD-EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
              +L A   T L D  G   F+    K G          ++DL  + G      R + E
Sbjct: 243 LASVLTA--FTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFE 300

Query: 388 LPIKSTPILWRTLLSSCSSHNNL 410
              +   +LW T++S  S +   
Sbjct: 301 EITEPDLVLWNTMVSGYSQNEEF 323


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/572 (36%), Positives = 318/572 (55%), Gaps = 43/572 (7%)

Query: 23  NAL-SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           NAL +L  +C S    +    V  +   ++DL   T ++ +  +    +    A  +F+ 
Sbjct: 198 NALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGA----ARSVFEE 253

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +     V++N M  GY  S   + A  LF  ++   +  D+++F S+L ACA VG  A  
Sbjct: 254 VDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFA-- 311

Query: 142 EGKQLHCFAIKLGLN----SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
            GK +H   I+L  N    + L V   L+  Y++C ++  ARRIF+N++   VVS+N I+
Sbjct: 312 HGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTIL 371

Query: 198 TAYARSS-------------------------------RPNEALSLFRELQERNLKPTDV 226
           + Y  SS                                  +AL LF +++  N+KP D 
Sbjct: 372 SGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDY 431

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
           T   A+++C  LG+L  GK +H +I + G +       ALI M+A+CG + +A  +F  M
Sbjct: 432 TYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVM 491

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
              D+ +W+AMI A   HG G +++ +F+ M+   + PD I+FL +L AC+H+GLVDEG+
Sbjct: 492 PNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGF 551

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
            YF SM+  +GI+PG  HY  ++DLLGRAGR+ EA   I  +P + TP +W  +LS C +
Sbjct: 552 RYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRT 611

Query: 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCS 466
             ++ L     +++F++   H G Y++LSN  + AG W D   +RKLM+DRGV K PGCS
Sbjct: 612 SGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCS 671

Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
            IE  N V  F  GD  H  + ++ K L+ +  +++ +GYVPDT +V H DME  +KE  
Sbjct: 672 WIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKMRKLGYVPDTKVVLH-DMEPHQKEHI 730

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           L  HSE+LA+ FGLLN PPG T+ V+KNLR+C
Sbjct: 731 LFAHSERLAVGFGLLNLPPGATVTVLKNLRIC 762



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 145/319 (45%), Gaps = 45/319 (14%)

Query: 78  LFDRIPEP--DIVLFNTMARGYSRSKTPIRAIFLFVELLNSG-LLPDDYSFPSLLKACAC 134
            FD +P    D VL N +   Y+R+     A+ +F  LL SG L PDDYSF +LL A   
Sbjct: 110 FFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGH 169

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC---------------------- 172
           +   ++    QLHC  +K G    L VC  L+ LY +C                      
Sbjct: 170 LPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDL 229

Query: 173 ------------SDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN 220
                        DV AAR +FE +     V +NA+I+ Y  S    EA  LFR +    
Sbjct: 230 TWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLER 289

Query: 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK----YGLDKYVKVNTALIDMHAKCGRL 276
           +   + T  S LS+CA +G    GK +H  I +    +  +  + VN AL+  ++KCG +
Sbjct: 290 VPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNI 349

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
             A  +FDNM+ KD  +W+ ++  Y       K++ +FEEM       +E++++ ++   
Sbjct: 350 AVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYK----NELSWMVMVSGY 405

Query: 337 SHTGLVDEGWNYFYSMRDK 355
            H G  ++    F  MR +
Sbjct: 406 VHGGFAEDALKLFNKMRSE 424



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 130/300 (43%), Gaps = 43/300 (14%)

Query: 163 TTLINLYAECSDVEAARRIFENI--SEPCVVSYNAIITAYARSSRPNEALSLFREL-QER 219
           T+L+  YA    + AA   F+ +  +    V +NA+I+AYAR+S    A+++FR L    
Sbjct: 92  TSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASG 151

Query: 220 NLKPTDVTMLSALSSCALLGSLDLG--KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           +L+P D +  + LS+   L ++ +     +H  + K G    + V  AL+ ++ KC   +
Sbjct: 152 SLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPE 211

Query: 278 ---DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE------------------ 316
              DA  V D M  KD   W+ M+V Y   G    +  +FEE                  
Sbjct: 212 ATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVH 271

Query: 317 -------------MMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVP-- 360
                        M+  +V  DE TF  +L AC++ GL   G + +   +R +   VP  
Sbjct: 272 SGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEA 331

Query: 361 GIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
            +     +V    + G +  A R  D + +K   + W T+LS     + L  A +V E +
Sbjct: 332 ALPVNNALVTFYSKCGNIAVARRIFDNMTLKDV-VSWNTILSGYVESSCLDKAVEVFEEM 390


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 219/591 (37%), Positives = 324/591 (54%), Gaps = 61/591 (10%)

Query: 22  PNALSL---LPRCTSF----RGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEH 74
           P+A+SL   LP C S     RG KQ+H   +++ L  D+ V   +++   +      ME 
Sbjct: 229 PDAVSLVNVLPACASVGAWSRG-KQVHGYALRSGLFEDVFVGNAVVDMYAK---CGMMEE 284

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSR----------------------------------- 99
           A+ +F+R+   D+V +N M  GYS+                                   
Sbjct: 285 ANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQ 344

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN--- 156
                 A+ +F ++   G  P+  +  SLL  CA  G   L  GK+ HC AIK  LN   
Sbjct: 345 RGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGT--LLHGKETHCHAIKWILNLDE 402

Query: 157 ----SNLYVCTTLINLYAECSDVEAARRIFENI--SEPCVVSYNAIITAYARSSRPNEAL 210
                +L V   LI++Y++C   +AAR +F+ I   +  VV++  +I   A+    NEAL
Sbjct: 403 NDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEAL 462

Query: 211 SLFRE-LQERN-LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK-YVKVNTALI 267
            LF + LQ  N + P   T+  AL +CA LG+L  G+ IH Y+ +   +   + V   LI
Sbjct: 463 ELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLI 522

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
           DM++K G +D A  VFDNM  ++  +W++++  Y  HG+G +++ +F EM K  + PD +
Sbjct: 523 DMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGV 582

Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
           TF+ +LYACSH+G+VD+G NYF  M   +G+VPG +HY CMVDLL RAGRLDEA   I  
Sbjct: 583 TFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRG 642

Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447
           +P+K TP +W  LLS+C  + N+ L +    ++ EL+  + G Y +LSN+ A A  W+DV
Sbjct: 643 MPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDV 702

Query: 448 DYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYV 507
             +R LMK+ G+ K PGCS ++       FF+GD  H  S  +   L +L++ +K +GYV
Sbjct: 703 ARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYV 762

Query: 508 PDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           PD     H D++DEEK   L  HSEKLA+ +G+L T PG  IR+ KNLR C
Sbjct: 763 PDNRFALH-DVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRAC 812



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 173/358 (48%), Gaps = 17/358 (4%)

Query: 5   PSPPI---TQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQND-LNVLTKLI 60
           P PP+   T        + T    +L  +C S    + IH   +   L +D  ++++  +
Sbjct: 10  PKPPLLFLTTFFFSTASSTTDLTSTLFHQCKSLASAELIHQQLLVQGLPHDPTHIISMYL 69

Query: 61  NFCTQNPTTSSMEHAHLLFDRIPEPDIVLF-NTMARGYSRSKTPIRAIFLFVELLNSGLL 119
            F +     S +   H      P    V + N + R           + L+  +   G  
Sbjct: 70  TFNSPAKALSVLRRLH------PSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWR 123

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179
           PD Y+FP +LKAC  +   +   G  +H      G   N++V   L+++Y  C   E AR
Sbjct: 124 PDHYTFPFVLKACGEI--PSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENAR 181

Query: 180 RIFENISEPCV---VSYNAIITAYARSSRPNEALSLFRELQER-NLKPTDVTMLSALSSC 235
           ++F+ + E  V   VS+N+I+ AY +      A+ +F  + E   ++P  V++++ L +C
Sbjct: 182 QVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPAC 241

Query: 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWS 295
           A +G+   GK +H Y  + GL + V V  A++DM+AKCG +++A  VF+ M  KD  +W+
Sbjct: 242 ASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWN 301

Query: 296 AMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           AM+  Y+  G+   ++ +FE++ + ++  + +T+  ++   +  GL  E  + F  MR
Sbjct: 302 AMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMR 359



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 136/302 (45%), Gaps = 16/302 (5%)

Query: 163 TTLINLYAECSDVEAARRIFENI--SEPCVVSYNAIITAYARSSRPNEALSLFRELQERN 220
           T +I++Y   +    A  +   +  S   V  +N +I          + L L+R +Q   
Sbjct: 62  THIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLG 121

Query: 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV 280
            +P   T    L +C  + S   G  +H  +   G +  V V   L+ M+ +CG  ++A 
Sbjct: 122 WRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENAR 181

Query: 281 SVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMK-AQVSPDEITFLGLLYAC 336
            VFD M  +   D  +W++++ AY   G   +++ MFE M +   + PD ++ + +L AC
Sbjct: 182 QVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPAC 241

Query: 337 SHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
           +  G    G   + Y++R   G+   +     +VD+  + G ++EA +  + + +K   +
Sbjct: 242 ASVGAWSRGKQVHGYALRS--GLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDV-V 298

Query: 396 LWRTLLSSCSS----HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLR 451
            W  +++  S      + LGL +++ E   EL+        +++    R   +E +D  R
Sbjct: 299 SWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWS--AVIAGYAQRGLGFEALDVFR 356

Query: 452 KL 453
           ++
Sbjct: 357 QM 358


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/521 (37%), Positives = 307/521 (58%), Gaps = 6/521 (1%)

Query: 38   KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
            +QIH + I++ LQ D+N+   LIN   +     S++ A+ +F  +   +++ +  M  G+
Sbjct: 607  RQIHMLIIESGLQLDVNLGNALINMYIR---CGSLQDAYEVFHSLRHRNVMSWTAMIGGF 663

Query: 98   SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            +      +A  LF ++ N G  P   +F S+LKAC  + +  L+EGK++    +  G   
Sbjct: 664  ADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKAC--MSSACLDEGKKVIAHILNSGYEL 721

Query: 158  NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            +  V   LI+ Y++   +  AR++F+ +    ++S+N +I  YA++     AL    ++Q
Sbjct: 722  DTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQ 781

Query: 218  ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
            E+ +     + +S L++C+   +L+ GK +H  I K  +   V+V  ALI M+AKCG L+
Sbjct: 782  EQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLE 841

Query: 278  DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            +A  VFDN + K+   W+AMI AYA HG   K++  F  M K  + PD  TF  +L AC+
Sbjct: 842  EAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACN 901

Query: 338  HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
            H+GLV EG   F S+  ++G+ P I+HYGC+V LLGRAGR  EA   I+++P      +W
Sbjct: 902  HSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVW 961

Query: 398  RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             TLL +C  H N+ LA+       +L+  +   YV+LSN+ A AGRW+DV  +R++M+ R
Sbjct: 962  ETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGR 1021

Query: 458  GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
            G+ K PG S IEV+N++ EF + D  H  + ++ + L  L  E++  GY PDT  V H +
Sbjct: 1022 GIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRLSLEMERAGYSPDTQYVLH-N 1080

Query: 518  MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            ++ E +E +L  HSE+LAI +GLL TPPGT IR+ KNLR+C
Sbjct: 1081 LDKEHQETSLCTHSERLAIAYGLLKTPPGTPIRIFKNLRIC 1121



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 106/407 (26%), Positives = 206/407 (50%), Gaps = 12/407 (2%)

Query: 20  NTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N    LS+L  C++ + L   + IH+   +    +D+ +   LI+   +      +  A 
Sbjct: 384 NRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYAR---CGDLPRAR 440

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            LF+ +P+ D++ +N +  GY+R +    A+ L+ ++ + G+ P   +F  LL AC    
Sbjct: 441 ELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSAC--TN 498

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
           + A  +GK +H   ++ G+ SN ++   L+N+Y  C  +  A+ +FE      ++S+N++
Sbjct: 499 SSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSM 558

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           I  +A+      A  LF E+++  L+P  +T  S L  C    +L+LG+ IH  I + GL
Sbjct: 559 IAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGL 618

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
              V +  ALI+M+ +CG L DA  VF ++  ++  +W+AMI  +A  G+  K+  +F +
Sbjct: 619 QLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQ 678

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYF-YSMRDKYGIVPGIKHYGCMVDLLGRA 375
           M      P + TF  +L AC  +  +DEG     + +   Y +  G+ +   ++    ++
Sbjct: 679 MQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGN--ALISAYSKS 736

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
           G + +A +  D++P +   + W  +++  + +   G A Q   ++ E
Sbjct: 737 GSMTDARKVFDKMPNRDI-MSWNKMIAGYAQNGLGGTALQFAYQMQE 782



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 200/407 (49%), Gaps = 14/407 (3%)

Query: 25  LSLLPRCT---SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           L LL  CT   ++   K IH   +++ ++++ ++   L+N   +     S+  A  +F+ 
Sbjct: 490 LHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRR---CGSIMEAQNVFEG 546

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
               DI+ +N+M  G+++  +   A  LF+E+   GL PD  +F S+L    C   EALE
Sbjct: 547 TRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVL--VGCKNPEALE 604

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G+Q+H   I+ GL  ++ +   LIN+Y  C  ++ A  +F ++    V+S+ A+I  +A
Sbjct: 605 LGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFA 664

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
                 +A  LF ++Q    KP   T  S L +C     LD GK +  +I   G +    
Sbjct: 665 DQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTG 724

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V  ALI  ++K G + DA  VFD M  +D  +W+ MI  YA +G G  ++    +M +  
Sbjct: 725 VGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQG 784

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           V  ++ +F+ +L ACS    ++EG    ++   K  +   ++    ++ +  + G L+EA
Sbjct: 785 VVLNKFSFVSILNACSSFSALEEG-KRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEA 843

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428
               D    K+  + W  ++++ + H   GLA + ++  F   D  G
Sbjct: 844 QEVFDNFTEKNV-VTWNAMINAYAQH---GLASKALD-FFNCMDKEG 885



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 112/410 (27%), Positives = 202/410 (49%), Gaps = 10/410 (2%)

Query: 14  PPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTS 70
           P    TN    + L+  CT  R L   K+IHA  ++  +  D+ +   LIN   +     
Sbjct: 75  PRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVK---CR 131

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130
           S+  AH +F ++P  D++ +N++   Y++     +A  LF E+  +G +P   ++ S+L 
Sbjct: 132 SVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILT 191

Query: 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV 190
           AC C  AE LE GK++H   I+ G   +  V  +L+N+Y +C D+ +AR++F  I    V
Sbjct: 192 AC-CSPAE-LEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDV 249

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY 250
           VSYN ++  YA+ +   E + LF ++    + P  VT ++ L +      LD GK IH+ 
Sbjct: 250 VSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKL 309

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310
               GL+  ++V TAL  M  +CG +  A    +  + +D   ++A+I A A HG   ++
Sbjct: 310 AVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEA 369

Query: 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370
              + +M    V  +  T+L +L ACS +  +  G    +S   + G    ++    ++ 
Sbjct: 370 FEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAG-ELIHSHISEVGHSSDVQIGNSLIS 428

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
           +  R G L  A    + +P K   I W  +++  +   + G A ++ +++
Sbjct: 429 MYARCGDLPRARELFNTMP-KRDLISWNAIIAGYARREDRGEAMKLYKQM 477



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/395 (28%), Positives = 196/395 (49%), Gaps = 24/395 (6%)

Query: 25  LSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINF---CTQNPTTSSMEHAHLL 78
           +S+L  C S   L   K+IH+  I+   Q D  V   L+N    C   P+      A  +
Sbjct: 187 ISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPS------ARQV 240

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
           F  I   D+V +NTM   Y++       I LF ++ + G+ PD  ++ +LL A       
Sbjct: 241 FSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTT--PS 298

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
            L+EGK++H  A+  GLNS++ V T L  ++  C DV  A++  E  ++  VV YNA+I 
Sbjct: 299 MLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIA 358

Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
           A A+     EA   + +++   +     T LS L++C+   +L  G+ IH +I + G   
Sbjct: 359 ALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSS 418

Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
            V++  +LI M+A+CG L  A  +F+ M  +D  +W+A+I  YA      +++ ++++M 
Sbjct: 419 DVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQ 478

Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG----CMVDLLGR 374
              V P  +TFL LL AC+++    +G      M  +  +  GIK  G     ++++  R
Sbjct: 479 SEGVKPGRVTFLHLLSACTNSSAYSDG-----KMIHEDILRSGIKSNGHLANALMNMYRR 533

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
            G + EA    +    +   I W ++++  + H +
Sbjct: 534 CGSIMEAQNVFEGTRARDI-ISWNSMIAGHAQHGS 567



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/463 (25%), Positives = 223/463 (48%), Gaps = 51/463 (11%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K+IH + +   L +D+ V T L     +    +  + A    +   + D+V++N +    
Sbjct: 304 KRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQA---LEAFADRDVVVYNALIAAL 360

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           ++      A   + ++ + G++ +  ++ S+L AC+   ++AL  G+ +H    ++G +S
Sbjct: 361 AQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACST--SKALGAGELIHSHISEVGHSS 418

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           ++ +  +LI++YA C D+  AR +F  + +  ++S+NAII  YAR     EA+ L++++Q
Sbjct: 419 DVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQ 478

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              +KP  VT L  LS+C    +   GK IHE I + G+     +  AL++M+ +CG + 
Sbjct: 479 SEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIM 538

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           +A +VF+    +D  +W++MI  +A HG    +  +F EM K  + PD+ITF  +L  C 
Sbjct: 539 EAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCK 598

Query: 338 -----------HTGLVDEGW-----------NYFY---SMRDKYGIVPGIKH-----YGC 367
                      H  +++ G            N +    S++D Y +   ++H     +  
Sbjct: 599 NPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTA 658

Query: 368 MVDLLGRAGRLDEAYRFIDEL------PIKSTPILWRTLLSSCSSHNNLGLAKQVIERI- 420
           M+      G   +A+    ++      P+KST   + ++L +C S   L   K+VI  I 
Sbjct: 659 MIGGFADQGEDRKAFELFWQMQNDGFKPVKST---FSSILKACMSSACLDEGKKVIAHIL 715

Query: 421 ---FELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460
              +ELD   G     L +  +++G   D   +   M +R ++
Sbjct: 716 NSGYELDTGVGN---ALISAYSKSGSMTDARKVFDKMPNRDIM 755



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 165/356 (46%), Gaps = 39/356 (10%)

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
           C    +L E K++H   ++ G+  ++++   LIN+Y +C  V  A ++F  +    V+S+
Sbjct: 92  CTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISW 151

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           N++I+ YA+     +A  LF E+Q     P+ +T +S L++C     L+ GK IH  I +
Sbjct: 152 NSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIE 211

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
            G  +  +V  +L++M+ KC  L  A  VF  +  +D  +++ M+  YA      + I +
Sbjct: 212 AGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGL 271

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEG------------------WNYFYSMRDK 355
           F +M    + PD++T++ LL A +   ++DEG                       +M  +
Sbjct: 272 FGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVR 331

Query: 356 YGIVPGIKH------------YGCMVDLLGRAGRLDEAYRFI-----DELPIKSTPILWR 398
            G V G K             Y  ++  L + G  +EA+        D + +  T  L  
Sbjct: 332 CGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYL-- 389

Query: 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454
           ++L++CS+   LG  + +   I E+   H  D  I ++L +   R  D+   R+L 
Sbjct: 390 SVLNACSTSKALGAGELIHSHISEV--GHSSDVQIGNSLISMYARCGDLPRARELF 443



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 65/132 (49%)

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
           R +E   L    Q R  +      +  + +C    SL   K IH  + + G+   + ++ 
Sbjct: 62  RGSEREDLSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSN 121

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
            LI+M+ KC  + DA  VF  M  +D  +W+++I  YA  G   K+  +FEEM  A   P
Sbjct: 122 LLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIP 181

Query: 325 DEITFLGLLYAC 336
            +IT++ +L AC
Sbjct: 182 SKITYISILTAC 193


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/560 (37%), Positives = 314/560 (56%), Gaps = 33/560 (5%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIK-THLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           S LP C+    L   +++HA  +K + L  +  V + L++    +        A  +FD 
Sbjct: 276 SALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGV---ARRVFDM 332

Query: 82  IP--EPDIVLFNTMARGYSRSKTPIRAIFLFVEL-LNSGLLPDDYSFPSLLKACACVGAE 138
           +P     + L+N M  GY+++     A+ LF  +   +G++P + +   +L ACA   +E
Sbjct: 333 VPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACA--RSE 390

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
                + +H + +K G+  N +V   L++LYA   D+EAAR IF  I    VVS+N +IT
Sbjct: 391 TFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLIT 450

Query: 199 AYARSSRPNEALSLFRELQERN------------------LKPTDVTMLSALSSCALLGS 240
                   ++A  L RE+Q++                   + P +VT+++ L  CA+L +
Sbjct: 451 GCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAA 510

Query: 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVA 300
              GK IH Y  ++ LD  + V +AL+DM+AKCG L  + +VFD +  ++   W+ +I+A
Sbjct: 511 PAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMA 570

Query: 301 YATHGQGHKSILMFEEM-MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359
           Y  HG G ++I +F+ M M  +  P+E+TF+  L ACSH+G+VD G   F+SM+  +G+ 
Sbjct: 571 YGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQ 630

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
           P    + C VD+LGRAGRLDEAY  I  + P +     W + L +C  H N+ L +   E
Sbjct: 631 PTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAE 690

Query: 419 RIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFF 478
           R+F+L+      YV+L N+ + AG WE    +R  M+ RGV K PGCS IE++ V+  F 
Sbjct: 691 RLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDGVIHRFM 750

Query: 479 SGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITF 538
           +G+  H  ST +   +D L + ++  GY PDTS V H D+E+ EK   LRYHSEKLAI F
Sbjct: 751 AGESAHPESTLVHAHMDALWERMRNQGYTPDTSSVLH-DIEESEKAAILRYHSEKLAIAF 809

Query: 539 GLLNTPPGTTIRVVKNLRVC 558
           GLL TPPG TIRV KNLRVC
Sbjct: 810 GLLRTPPGATIRVAKNLRVC 829



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 106/401 (26%), Positives = 186/401 (46%), Gaps = 19/401 (4%)

Query: 33  SFRGLKQIHAVTIKTHLQNDLN--VLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLF 90
           S   ++ IH   ++  L +     V   L+   T       +  A  LF+ +P  D V F
Sbjct: 74  SLIAVRSIHGAALRRDLLHGFTPAVANALL---TAYARCGDLTAALALFNAMPSRDAVTF 130

Query: 91  NTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFA 150
           N++       +  + A+    ++L  G     ++  S+L AC+ + AE L  G++ H FA
Sbjct: 131 NSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHL-AEDLRLGREAHAFA 189

Query: 151 IKLGL--NSNLYVCTTLINLYAECSDVEAARRIFENISEP-----CVVSYNAIITAYARS 203
           +K G       +    L+++YA    V+ A+ +F ++         VV++N +++   +S
Sbjct: 190 LKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQS 249

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI-KKYGLDKYVKV 262
            R  EA+ +  ++  R ++P  +T  SAL +C+ L  L LG+ +H Y+ K   L     V
Sbjct: 250 GRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFV 309

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQ--AWSAMIVAYATHGQGHKSILMFEEM-MK 319
            +AL+DM+A   R+  A  VFD + G   Q   W+AM+  YA  G   +++ +F  M  +
Sbjct: 310 ASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAE 369

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
           A V P E T  G+L AC+ +     G    +    K G+         ++DL  R G + 
Sbjct: 370 AGVVPSETTIAGVLPACARSETF-AGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDM- 427

Query: 380 EAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
           EA R+I         + W TL++ C    ++  A Q++  +
Sbjct: 428 EAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREM 468



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 156/361 (43%), Gaps = 25/361 (6%)

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL--YVCTTLINLYAECSDVEAA 178
           D ++ P   K+ A +   +L   + +H  A++  L       V   L+  YA C D+ AA
Sbjct: 58  DHFALPPAAKSAAAL--RSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAA 115

Query: 179 RRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL 238
             +F  +     V++N++I A     R   AL   R++       +  T++S L +C+ L
Sbjct: 116 LALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHL 175

Query: 239 GS-LDLGKWIHEYIKKYGL---DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA- 293
              L LG+  H +  K G    D+    N AL+ M+A+ G +DDA  +F ++   D+   
Sbjct: 176 AEDLRLGREAHAFALKNGFLDGDERFAFN-ALLSMYARLGLVDDAQMLFGSVDTTDSPGG 234

Query: 294 ----WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-Y 348
               W+ M+      G+  ++I +  +M+   V PD ITF   L ACS   ++  G   +
Sbjct: 235 GVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMH 294

Query: 349 FYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI-LWRTLLSSCSSH 407
            Y ++D   +         +VD+     R+  A R  D +P     + LW  ++     +
Sbjct: 295 AYVLKDS-DLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMV---CGY 350

Query: 408 NNLGLAKQVIERIFELDDSHG---GDYVILSNL--CARAGRWEDVDYLRKLMKDRGVLKV 462
              G+ ++ +E    ++   G    +  I   L  CAR+  +   + +   +  RG+   
Sbjct: 351 AQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADN 410

Query: 463 P 463
           P
Sbjct: 411 P 411


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/572 (36%), Positives = 331/572 (57%), Gaps = 45/572 (7%)

Query: 28  LPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDI 87
           + RC + R LKQIHA  IKT   +      +L+ F T + T   +++A   F +I  P+ 
Sbjct: 22  ISRCKTTRHLKQIHAHFIKTGQIHHPLAAAELLKFLTLS-TQREIKYARKFFSQIHHPNC 80

Query: 88  VLFNTMARGYSRSK-------TPIRAIFLFVELLNSGLL-PDDYSFPSLLKACACVGAEA 139
             +NT+ R  + S          + A+  F  +L  GL+ P+ ++FP +LKACA +    
Sbjct: 81  FSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLA--R 138

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC--------------------------- 172
           +EEGKQLH F +KLGL S+ +V + L+ +Y  C                           
Sbjct: 139 IEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMID 198

Query: 173 -----SDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT 227
                 D+ A+R +F+++    VVS+N +I+  A++    EA+ +F ++Q  ++ P  VT
Sbjct: 199 GYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVT 258

Query: 228 MLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS 287
           ++S L + + LG+++LGKW+H + +K  ++    + +ALIDM++KCG +D AV VF+ + 
Sbjct: 259 LVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIR 318

Query: 288 GKDTQ-AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
            K     WSA+I   A HG+   ++  F  M +A V+P ++ ++G+L ACSH GLV+EG 
Sbjct: 319 NKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGR 378

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
           + +Y M +  G++P I+HYGCMVDLLGRAG L+EA + I  +P+K   ++ + LL +C  
Sbjct: 379 SIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKM 438

Query: 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCS 466
           H N+ + +++ + +        G YV LSN+ A  G WE V  +R  MK+  + K PGCS
Sbjct: 439 HGNIEMGERIAKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCS 498

Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
            IE++ V+ EF   D  H  +  +   L+E+   L+ VGY P+T+ V   +M+++EK+ A
Sbjct: 499 WIELDGVIHEFLVEDDSHPRAEGIHSMLEEMSDRLRSVGYRPNTTQVLL-NMDEKEKQSA 557

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           L YHSEK+AI FGL++T P T +++VKNLRVC
Sbjct: 558 LHYHSEKIAIAFGLISTRPQTPLQIVKNLRVC 589


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/551 (38%), Positives = 321/551 (58%), Gaps = 25/551 (4%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKT-HLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFD 80
           S+LP C+    L   K++HA  +K   L  +  V + L++ +C      S       +FD
Sbjct: 303 SVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFD 362

Query: 81  RIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS-GLLPDDYSFPSLLKACACVGAEA 139
           R     I L+N M  GY++++    A+ LF+E+  S GLL +  +   ++ AC   GA +
Sbjct: 363 R----KIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFS 418

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
            +E   +H F +K GL+ + +V   L+++Y+    ++ A+RIF  + +  +V++N IIT 
Sbjct: 419 KKEA--IHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITG 476

Query: 200 YARSSRPNEALSLFRELQ-------ER----NLKPTDVTMLSALSSCALLGSLDLGKWIH 248
           Y  S R  +AL +  ++Q       ER    +LKP  +T+++ L SCA L +L  GK IH
Sbjct: 477 YVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIH 536

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
            Y  K  L   V V +AL+DM+AKCG L  +  VFD +  ++   W+ +++AY  HG   
Sbjct: 537 AYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQ 596

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
            +I M   MM   V P+E+TF+ +  ACSH+G+V+EG   FY+M+  YG+ P   HY C+
Sbjct: 597 DAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACV 656

Query: 369 VDLLGRAGRLDEAYRFIDELPIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
           VDLLGRAGR+ EAY+ I+ +P        W +LL +C  HNNL + +   + + +L+ + 
Sbjct: 657 VDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPNV 716

Query: 428 GGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYS 487
              YV+L+N+ + AG W     +R+ MK +GV K PGCS IE  + V +F +GD  H  S
Sbjct: 717 ASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQS 776

Query: 488 TDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGT 547
             L+  L+ L + ++  GY+PDTS V H ++E++EKEI L  HSEKLAI FG+LNT PGT
Sbjct: 777 EKLRGYLETLWERMRKEGYIPDTSCVLH-NVEEDEKEILLCGHSEKLAIAFGILNTSPGT 835

Query: 548 TIRVVKNLRVC 558
            IRV KNLRVC
Sbjct: 836 IIRVAKNLRVC 846



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 143/258 (55%), Gaps = 9/258 (3%)

Query: 93  MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
           + R   RS     A+  +++++  G+ PD+++FP+LLKA A +  + ++ GKQ+H    K
Sbjct: 64  LLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADL--QDMDLGKQIHAHVYK 121

Query: 153 LGLN-SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALS 211
            G    ++ V  TL+NLY +C D  A  ++F+ ISE   VS+N++I++     +   AL 
Sbjct: 122 FGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALE 181

Query: 212 LFRELQERNLKPTDVTMLSALSSCA---LLGSLDLGKWIHEY-IKKYGLDKYVKVNTALI 267
            FR + + +++P+  T++S   +C+   +   L +GK +H Y ++K  L+ ++ +NT L+
Sbjct: 182 AFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFI-INT-LV 239

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
            M+ K G+L  +  +  +  G+D   W+ ++ +   + Q  +++    EM+   V PD  
Sbjct: 240 AMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGF 299

Query: 328 TFLGLLYACSHTGLVDEG 345
           T   +L ACSH  ++  G
Sbjct: 300 TISSVLPACSHLEMLRTG 317



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 179/370 (48%), Gaps = 12/370 (3%)

Query: 38  KQIHAVTIKTHLQND-LNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           KQIHA   K     D + V   L+N   +          + +FDRI E + V +N++   
Sbjct: 113 KQIHAHVYKFGYGVDSVTVANTLVNLYRK---CGDFGAVYKVFDRISERNQVSWNSLISS 169

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA-EALEEGKQLHCFAIKLG- 154
               +    A+  F  +L+  + P  ++  S+  AC+     E L  GKQ+H + ++ G 
Sbjct: 170 LCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGE 229

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           LNS  ++  TL+ +Y +   + +++ +  +     +V++N ++++  ++ +  EAL   R
Sbjct: 230 LNS--FIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLR 287

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG-LDKYVKVNTALIDMHAKC 273
           E+    ++P   T+ S L +C+ L  L  GK +H Y  K G LD+   V +AL+DM+  C
Sbjct: 288 EMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNC 347

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK-AQVSPDEITFLGL 332
            ++     VFD M  +    W+AMI  YA +    +++L+F EM + A +  +  T  G+
Sbjct: 348 KQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGV 407

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           + AC  +G   +     +    K G+         ++D+  R G++D A R   ++  + 
Sbjct: 408 VPACVRSGAFSKK-EAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRD 466

Query: 393 TPILWRTLLS 402
             + W T+++
Sbjct: 467 L-VTWNTIIT 475


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/543 (36%), Positives = 311/543 (57%), Gaps = 10/543 (1%)

Query: 20  NTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N    LS+L  C++ + L   K IH+   +    +D+ +   LI+   +      +  A 
Sbjct: 329 NRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYAR---CGDLPKAR 385

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            LF  +P+ D++ +N +  GY+R +    A+ L+ ++ + G+ P   +F  LL ACA   
Sbjct: 386 ELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACA--N 443

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
           + A  +GK +H   ++ G+ SN ++   L+N+Y  C  +  A+ +FE      V+S+N++
Sbjct: 444 SSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSM 503

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           I  +A+      A  LF+E+Q   L+P ++T  S LS C    +L+LGK IH  I + GL
Sbjct: 504 IAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGL 563

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
              V +  ALI+M+ +CG L DA +VF ++  +D  +W+AMI   A  G+  K+I +F +
Sbjct: 564 QLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQ 623

Query: 317 MMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
           M      P D  TF  +L AC+H GLV EG+  F SM  +YG++P I+HYGC+V LLGRA
Sbjct: 624 MQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRA 683

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
            R  EA   I+++P      +W TLL +C  H N+ LA+       +L+  +   Y++LS
Sbjct: 684 RRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLS 743

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           N+ A AGRW+DV  +R++M+ RG+ K PG S IEV+N++ EF + D  H  + ++   L 
Sbjct: 744 NVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELK 803

Query: 496 ELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNL 555
            L  E++  GY PDT  V H D+    +E +L  HSE+LAI +GL+ TPPGT IR+ KNL
Sbjct: 804 RLSVEMEEAGYFPDTQHVLH-DLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNL 862

Query: 556 RVC 558
           R+C
Sbjct: 863 RIC 865



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 127/460 (27%), Positives = 225/460 (48%), Gaps = 17/460 (3%)

Query: 10  TQSPPPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQN 66
           T  P P   T+    ++LL  CT  R L   K+IHA  ++  +  D+ +   LIN   + 
Sbjct: 17  THQPRPTE-TDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVK- 74

Query: 67  PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFP 126
               S+  AH +F  +P  D++ +N++   Y++     +A  LF E+ N+G +P+  ++ 
Sbjct: 75  --CRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYI 132

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS 186
           S+L   AC     LE GK++H   IK G   +  V  +L+++Y +C D+  AR++F  IS
Sbjct: 133 SIL--TACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGIS 190

Query: 187 EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW 246
              VVSYN ++  YA+ +   E L LF ++    + P  VT ++ L +      LD GK 
Sbjct: 191 PRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKR 250

Query: 247 IHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ 306
           IH+   + GL+  ++V TAL+ M  +CG +D A   F  ++ +D   ++A+I A A HG 
Sbjct: 251 IHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGH 310

Query: 307 GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG 366
             ++   +  M    V+ +  T+L +L ACS +  ++ G    +S   + G    ++   
Sbjct: 311 NVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIGN 369

Query: 367 CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
            ++ +  R G L +A      +P K   I W  +++  +   + G A ++ +++      
Sbjct: 370 ALISMYARCGDLPKARELFYTMP-KRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVK 428

Query: 427 HGG-DYVILSNLCARAGRWED-----VDYLRKLMKDRGVL 460
            G   ++ L + CA +  + D      D LR  +K  G L
Sbjct: 429 PGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHL 468



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 131/490 (26%), Positives = 230/490 (46%), Gaps = 50/490 (10%)

Query: 20  NTPNALSLLPRCTS---FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N    +S+L  C S       K+IH+  IK   Q D  V   L++   +      +  A 
Sbjct: 127 NKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGK---CGDLPRAR 183

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +F  I   D+V +NTM   Y++       + LF ++ + G+ PD  ++ +LL A     
Sbjct: 184 QVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTT-- 241

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
              L+EGK++H   ++ GLNS++ V T L+ +   C DV++A++ F+ I++  VV YNA+
Sbjct: 242 PSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNAL 301

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           I A A+     EA   +  ++   +     T LS L++C+   +L+ GK IH +I + G 
Sbjct: 302 IAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGH 361

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
              V++  ALI M+A+CG L  A  +F  M  +D  +W+A+I  YA      +++ ++++
Sbjct: 362 SSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQ 421

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEG------------------WNYFYSMRDKYG- 357
           M    V P  +TFL LL AC+++    +G                   N   +M  + G 
Sbjct: 422 MQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGS 481

Query: 358 ------IVPGIK-----HYGCMVDLLGRAGRLDEAYRFIDELP---IKSTPILWRTLLSS 403
                 +  G +      +  M+    + G  + AY+   E+    ++   I + ++LS 
Sbjct: 482 LMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSG 541

Query: 404 CSSHNNLGLAKQVIERIFELD---DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460
           C +   L L KQ+  RI E     D + G+ +I  N+  R G  +D   +   ++ R V+
Sbjct: 542 CKNPEALELGKQIHGRITESGLQLDVNLGNALI--NMYIRCGSLQDARNVFHSLQHRDVM 599

Query: 461 K----VPGCS 466
                + GC+
Sbjct: 600 SWTAMIGGCA 609


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/523 (38%), Positives = 317/523 (60%), Gaps = 7/523 (1%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           L Q+HA  I +       +LTKL+N         S+ +   +F  +P PD  LF ++ R 
Sbjct: 28  LHQVHAHVIVSGYGCSRFLLTKLLNLAC---AAGSISYTRQIFLIVPNPDSFLFTSLIRS 84

Query: 97  YSRSKT-PIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155
            S+     + +++ +  ++ S + P +Y+F S++K+CA     AL  G+ +H   +  G 
Sbjct: 85  TSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCA--DLVALRHGRIIHGHVLVNGF 142

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
            S++YV T L++ Y +C  +  AR++F+ + +  VV++N++I+ Y ++    EA+ LF  
Sbjct: 143 GSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDR 202

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
           ++E  ++P   T +S LS+CA LG+  LG W+HEY    GLD  V + T+LI+M+ +CG 
Sbjct: 203 MKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGN 262

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           +  A  VFD+M  ++  AW+AMI  Y T+G G +++ +F EM +  + P+ ITF+ +L A
Sbjct: 263 VSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSA 322

Query: 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
           C+H GLV+EG   F SMR++Y +VP ++H+ C+VD+LGRAG LDEAY FI E+  +  P 
Sbjct: 323 CAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPA 382

Query: 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455
           +W  +L +C  H N GL  QV E     +  +   YVILSN+ A AGR + V+ +R  M 
Sbjct: 383 IWTAMLGACKMHKNFGLGAQVAEHRLASEPGNPAHYVILSNIYALAGRMDQVEMVRDNMI 442

Query: 456 DRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHH 515
            + + K  G S+I+++     F  GD  H+ + ++   LD+L+++ +  GYV  +  V H
Sbjct: 443 RKCLKKQVGYSTIDLDRKTYLFSMGDKSHTETNEIYHYLDQLMRKCREAGYVTVSDSVMH 502

Query: 516 GDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            ++E+EE+E AL YHSEKLAI FGLL T  GT IR+VKNLR+C
Sbjct: 503 -ELEEEEREYALGYHSEKLAIAFGLLKTSRGTVIRIVKNLRMC 544


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/521 (36%), Positives = 307/521 (58%), Gaps = 6/521 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +QIH+++IK   ++D+ V   LI+  ++      ++ A  + + + + D+V + +M  GY
Sbjct: 366 EQIHSLSIKNGFESDMYVSGVLIDMYSK---YGCLDKARKILEMLEKRDVVSWTSMIAGY 422

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            +      A+  F E+ + G+ PD+    S   A AC G +A+ +G Q+H      G  +
Sbjct: 423 VQHDFCEEALATFKEMQDCGVWPDNIGLAS--AASACAGIKAMRQGLQIHARVYVSGYAA 480

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           ++ +  TL+NLYA C   E A  +F  I     +++N +I+ + +S    +AL +F ++ 
Sbjct: 481 DISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMG 540

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           +   K    T +SA+S+ A L  +  GK +H    K G     +V  ALI ++ KCG ++
Sbjct: 541 QAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIE 600

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           DA  +F  MS ++  +W+ +I + + HG+G +++ +F++M +  + P+++TF+G+L ACS
Sbjct: 601 DAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACS 660

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H GLV+EG +YF SM + YG+ P   HY C+VD+LGRAG+LD A RF+DE+PI +  ++W
Sbjct: 661 HVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIW 720

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
           RTLLS+C  H N+ + +   + + EL+      YV+LSN  A  G+W + D +RK+MKDR
Sbjct: 721 RTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDR 780

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           G+ K PG S IEV N V  FF GD +H  S  + K L EL   L  +GY  +   + H +
Sbjct: 781 GIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFH-E 839

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            E E+K+     HSEKLA+ FGL+  PP   +RV+KNLRVC
Sbjct: 840 KEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVC 880



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 202/386 (52%), Gaps = 10/386 (2%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           SLL  C S   L   KQ+H+  +K  +  D      L++   +      +E AH +F+  
Sbjct: 250 SLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVK---CGDIETAHDIFNLG 306

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
              ++VL+N M   Y +     ++  +F ++  +G+ P+ +++P +L+ C C G   +E 
Sbjct: 307 DRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQ--IEL 364

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G+Q+H  +IK G  S++YV   LI++Y++   ++ AR+I E + +  VVS+ ++I  Y +
Sbjct: 365 GEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQ 424

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
                EAL+ F+E+Q+  + P ++ + SA S+CA + ++  G  IH  +   G    + +
Sbjct: 425 HDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISI 484

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
              L++++A+CGR ++A S+F  +  KD   W+ +I  +       +++++F +M +A  
Sbjct: 485 WNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGA 544

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
             +  TF+  + A ++   + +G    +    K G     +    ++ L G+ G +++A 
Sbjct: 545 KYNVFTFISAISALANLADIKQG-KQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAK 603

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHN 408
               E+ +++  + W T+++SCS H 
Sbjct: 604 MIFSEMSLRN-EVSWNTIITSCSQHG 628



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 186/386 (48%), Gaps = 11/386 (2%)

Query: 21  TPNALS-LLPRCTS---FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           TP  LS +L  CT    F   + IHA   K    ++  V   LI          S + A 
Sbjct: 143 TPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYL---GFGSFKLAE 199

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +F  +   D V FNT+  G+++      A+ +F E+  SGL PD  +  SLL ACA VG
Sbjct: 200 RVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVG 259

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
              L++GKQLH + +K G++ +     +L++LY +C D+E A  IF       VV +N +
Sbjct: 260 D--LQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLM 317

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           + AY + S   ++  +F ++Q   + P   T    L +C   G ++LG+ IH    K G 
Sbjct: 318 LVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGF 377

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
           +  + V+  LIDM++K G LD A  + + +  +D  +W++MI  Y  H    +++  F+E
Sbjct: 378 ESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKE 437

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M    V PD I       AC+    + +G    ++     G    I  +  +V+L  R G
Sbjct: 438 MQDCGVWPDNIGLASAASACAGIKAMRQGLQ-IHARVYVSGYAADISIWNTLVNLYARCG 496

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLS 402
           R +EA+    E+  K   I W  L+S
Sbjct: 497 RSEEAFSLFREIEHKD-EITWNGLIS 521



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 179/370 (48%), Gaps = 7/370 (1%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           +IHA ++   L  D  +   LI+   +N     +  A  +F  +   D V +  M  GY+
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGL---VWQARQVFKELSSRDHVSWVAMLSGYA 120

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
           +S     A  L+ ++  + ++P  Y   S+L   AC   +   +G+ +H    K    S 
Sbjct: 121 QSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLS--ACTKGKLFAQGRMIHAQVYKQAFCSE 178

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
            +V   LI LY      + A R+F ++     V++N +I+ +A+      AL +F E+Q 
Sbjct: 179 TFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQL 238

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
             L+P  VT+ S L++CA +G L  GK +H Y+ K G+        +L+D++ KCG ++ 
Sbjct: 239 SGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIET 298

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A  +F+     +   W+ M+VAY       KS  +F +M    + P++ T+  +L  C+ 
Sbjct: 299 AHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTC 358

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
           TG ++ G    +S+  K G    +   G ++D+  + G LD+A + ++ L  K   + W 
Sbjct: 359 TGQIELG-EQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLE-KRDVVSWT 416

Query: 399 TLLSSCSSHN 408
           ++++    H+
Sbjct: 417 SMIAGYVQHD 426



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 14/178 (7%)

Query: 23  NALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           +A+S L      +  KQ+H   +KT   ++  V   LI+   +     S+E A ++F  +
Sbjct: 553 SAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGK---CGSIEDAKMIFSEM 609

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
              + V +NT+    S+    + A+ LF ++   GL P+D +F  +L AC+ VG   +EE
Sbjct: 610 SLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVG--LVEE 667

Query: 143 G-KQLHCFAIKLGLN--SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
           G       +   GLN   + Y C  ++++      ++ ARR  + +     ++ NA+I
Sbjct: 668 GLSYFKSMSNVYGLNPIPDHYAC--VVDILGRAGQLDRARRFVDEMP----ITANAMI 719


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/521 (36%), Positives = 307/521 (58%), Gaps = 6/521 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +QIH+++IK   ++D+ V   LI+  ++      ++ A  + + + + D+V + +M  GY
Sbjct: 366 EQIHSLSIKNGFESDMYVSGVLIDMYSK---YRCLDKARKILEMLEKRDVVSWTSMIAGY 422

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            +      A+  F E+ + G+ PD+    S   A AC G +A+ +G Q+H      G  +
Sbjct: 423 VQHDFCEEALATFKEMQDCGVWPDNIGLAS--AASACAGIKAMRQGLQIHARVYVSGYAA 480

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           ++ +  TL+NLYA C   E A  +F  I     +++N +I+ + +S    +AL +F ++ 
Sbjct: 481 DISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMS 540

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           +   K    T +SA+S+ A L  +  GK +H    K G     +V  ALI ++ KCG ++
Sbjct: 541 QAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIE 600

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           DA  +F  MS ++  +W+ +I + + HG+G +++ +F++M +  + P+++TF+G+L ACS
Sbjct: 601 DAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACS 660

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H GLV+EG +YF SM + YG+ P   HY C+VD+LGRAG+LD A RF+DE+PI +  ++W
Sbjct: 661 HVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIW 720

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
           RTLLS+C  H N+ + +   + + EL+      YV+LSN  A  G+W + D +RK+MKDR
Sbjct: 721 RTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDR 780

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           G+ K PG S IEV N V  FF GD +H  S  + K L EL   L  +GY  +   + H +
Sbjct: 781 GIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFH-E 839

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            E E+K+     HSEKLA+ FGL+  PP   +RV+KNLRVC
Sbjct: 840 KEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVC 880



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 202/386 (52%), Gaps = 10/386 (2%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           SLL  C S   L   KQ+H+  +K  +  D      L++   +      +E AH +F+  
Sbjct: 250 SLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVK---CGDIETAHDIFNLG 306

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
              ++VL+N M   Y +     ++  +F ++  +G+ P+ +++P +L+ C C G   +E 
Sbjct: 307 DRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQ--IEL 364

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G+Q+H  +IK G  S++YV   LI++Y++   ++ AR+I E + +  VVS+ ++I  Y +
Sbjct: 365 GEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQ 424

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
                EAL+ F+E+Q+  + P ++ + SA S+CA + ++  G  IH  +   G    + +
Sbjct: 425 HDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISI 484

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
              L++++A+CGR ++A S+F  +  KD   W+ +I  +       +++++F +M +A  
Sbjct: 485 WNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGA 544

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
             +  TF+  + A ++   + +G    +    K G     +    ++ L G+ G +++A 
Sbjct: 545 KYNVFTFISAISALANLADIKQG-KQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAK 603

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHN 408
               E+ +++  + W T+++SCS H 
Sbjct: 604 MIFSEMSLRN-EVSWNTIITSCSQHG 628



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/386 (30%), Positives = 185/386 (47%), Gaps = 11/386 (2%)

Query: 21  TPNALS-LLPRCTS---FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           TP  LS +L  CT    F   + IHA   K    ++  V   LI          S + A 
Sbjct: 143 TPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYL---GFGSFKLAE 199

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +F  +   D V FNT+  G+++      A+ +F E+  SGL PD  +  SLL ACA VG
Sbjct: 200 RVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVG 259

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
              L++GKQLH + +K G++ +     +L++LY +C D+E A  IF       VV +N +
Sbjct: 260 D--LQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLM 317

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           + AY + S   ++  +F ++Q   + P   T    L +C   G ++LG+ IH    K G 
Sbjct: 318 LVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGF 377

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
           +  + V+  LIDM++K   LD A  + + +  +D  +W++MI  Y  H    +++  F+E
Sbjct: 378 ESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKE 437

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M    V PD I       AC+    + +G    ++     G    I  +  +V+L  R G
Sbjct: 438 MQDCGVWPDNIGLASAASACAGIKAMRQGLQ-IHARVYVSGYAADISIWNTLVNLYARCG 496

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLS 402
           R +EA+    E+  K   I W  L+S
Sbjct: 497 RSEEAFSLFREIDHKD-EITWNGLIS 521



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 177/370 (47%), Gaps = 7/370 (1%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           +IHA ++   L  D  +   LI+   +N     +  A  +F  +   D V +  M  GY+
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGL---VWQARQVFKELSSRDHVSWVAMLSGYA 120

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
           +      A  L+ ++  + ++P  Y   S+L   AC   +   +G+ +H    K    S 
Sbjct: 121 QRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLS--ACTKGKLFAQGRMIHAQVYKQAFCSE 178

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
            +V   LI LY      + A R+F ++     V++N +I+ +A+      AL +F E+Q 
Sbjct: 179 TFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQL 238

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
             L+P  VT+ S L++CA +G L  GK +H Y+ K G+        +L+D++ KCG ++ 
Sbjct: 239 SGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIET 298

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A  +F+     +   W+ M+VAY       KS  +F +M    + P++ T+  +L  C+ 
Sbjct: 299 AHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTC 358

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
           TG ++ G    +S+  K G    +   G ++D+  +   LD+A + ++ L  K   + W 
Sbjct: 359 TGQIELG-EQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLE-KRDVVSWT 416

Query: 399 TLLSSCSSHN 408
           ++++    H+
Sbjct: 417 SMIAGYVQHD 426



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 14/178 (7%)

Query: 23  NALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           +A+S L      +  KQ+H   +KT   ++  V   LI+   +     S+E A ++F  +
Sbjct: 553 SAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGK---CGSIEDAKMIFSEM 609

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
              + V +NT+    S+    + A+ LF ++   GL P+D +F  +L AC+ VG   +EE
Sbjct: 610 SLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVG--LVEE 667

Query: 143 G-KQLHCFAIKLGLN--SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
           G       +   GLN   + Y C  ++++      ++ ARR  + +     ++ NA+I
Sbjct: 668 GLSYFKSMSNVYGLNPIPDHYAC--VVDILGRAGQLDRARRFVDEMP----ITANAMI 719


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/503 (37%), Positives = 292/503 (58%), Gaps = 41/503 (8%)

Query: 13  PPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSM 72
           PPP +       LS     TS   L Q HA  +K+ L +     ++LI   + N    ++
Sbjct: 6   PPPPI-------LSFAEMATSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAI 58

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
            +AH +F RIP P+  ++NT+ R Y+ S TP  A+ +F ++L++ +LPD Y+F   LK+C
Sbjct: 59  PYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSC 118

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVE---------------- 176
                  +EEG+Q+H   +K GL  +L++  TLI+LYA C  +E                
Sbjct: 119 GSF--SGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVS 176

Query: 177 ----------------AARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN 220
                           A+RR+F       VVS+NA+IT Y+ + R +E L LF ++Q   
Sbjct: 177 WNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAG 236

Query: 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV 280
           +KP + T++S LS+CA +G+L  G+W+H YI K G+     V TAL+DM++KCG ++ A+
Sbjct: 237 VKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKAL 296

Query: 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG 340
            VF++   KD   W+++I   +THG G  ++ +F EM+     P+E+TF+ +L ACS  G
Sbjct: 297 EVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAG 356

Query: 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400
           L+DEG   F  M   +GI P I+HYGCMVDLLGR G L+EA   + ++P K   ++W +L
Sbjct: 357 LLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESL 416

Query: 401 LSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460
           L +C +H N+ LA++V +++ EL       +V LSN+ A  GRW+DV  +R+ M+ +GV 
Sbjct: 417 LGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVR 476

Query: 461 KVPGCSSIEVNNVVREFFSGDGV 483
           K PGCS IEV+  V EF +G+G+
Sbjct: 477 KDPGCSMIEVDGTVYEFLAGEGL 499


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/519 (37%), Positives = 306/519 (58%), Gaps = 33/519 (6%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           + +A  +FD     ++V +N +  GY+R K    +  LF+E+          S   +L  
Sbjct: 187 VNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLML 246

Query: 132 CACVGAEALEEGKQLHCFAIKLGL-NSNLYVCTTLINLYAECSDVEAARRIFENISEPCV 190
            AC   + L  GK ++   IK G+   NL +   LI+++A C +++AAR +F+ +    V
Sbjct: 247 SACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDV 306

Query: 191 VSYNAIITAYA-------------------------------RSSRPNEALSLFRELQER 219
           +S+ +I+T +A                               R +R  E L+LFR++Q  
Sbjct: 307 ISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMS 366

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
           N+KP + TM+S L++CA LG+L+LG+W   YI K  +     +  ALIDM+ KCG ++ A
Sbjct: 367 NVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKA 426

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
             +F+ M  KD   W+AMIV  A +G G +++ MF  M++A V+PDEIT++G++ AC+H 
Sbjct: 427 KKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHV 486

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRT 399
           GLV +G ++F +M  ++GI P + HYGCMVDLLGRAG L EA   I  +P+K   I+W +
Sbjct: 487 GLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGS 546

Query: 400 LLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459
           LL +C  H N+ LA+     I EL+  +G  YV+L N+ A   +W+++  +RK+M +RG+
Sbjct: 547 LLGACRVHKNVQLAEMAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGI 606

Query: 460 LKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDME 519
            K+PGCS +E+N +V EF +GD  H  S ++   L+ + ++L   GY PDTS V   D+ 
Sbjct: 607 KKIPGCSLMEMNGIVYEFVAGDKSHPQSKEIYAKLENMKQDLSNAGYSPDTSEVFL-DVG 665

Query: 520 DEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +E+KE AL  HSEKLAI + L+++  G TIR+VKNLR+C
Sbjct: 666 EEDKETALYMHSEKLAIAYALISSGKGVTIRIVKNLRMC 704



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 131/428 (30%), Positives = 215/428 (50%), Gaps = 48/428 (11%)

Query: 16  KLCTNTP------NALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTT 69
           ++ +NTP      + +SLL  C +   + QIH+ TIKT L ++   LTK+I FC    + 
Sbjct: 24  RMISNTPLHSFVKSPISLLETCNTMYEINQIHSQTIKTGLSSNHLFLTKVIIFCCTKES- 82

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
             + +A  +FD IP+P + ++NTM +GYSR       + L+  +L   + PD ++FP LL
Sbjct: 83  GDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLL 142

Query: 130 KACACVGAEALEEGKQLHCFAIKLG-LNSNLYVCTTLINLYAECSDVEAARRIFENISEP 188
           K        AL+ GK L   A+  G L+SNL+V    I+L++ C  V  AR+IF+     
Sbjct: 143 KGFT--KDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGW 200

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQER--NLKPTDVTMLSALSSCALLGSLDLGKW 246
            VV++N +++ Y R  R  E+  LF E++++   + P  VT++  LS+C+ L  L  GK 
Sbjct: 201 EVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKC 260

Query: 247 IH-EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDT-------------- 291
           I+ +YIK+  ++  + +  ALIDM A CG +D A  VFD M  +D               
Sbjct: 261 IYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTC 320

Query: 292 -----------------QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
                             +W+AMI  Y    +  + + +F +M  + V PDE T + +L 
Sbjct: 321 RIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILT 380

Query: 335 ACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
           AC+H G ++ G W   Y   DK  I         ++D+  + G +++A +  +E+  K  
Sbjct: 381 ACAHLGALELGEWAKTYI--DKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQ-KKD 437

Query: 394 PILWRTLL 401
              W  ++
Sbjct: 438 KFTWTAMI 445



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 125/243 (51%), Gaps = 4/243 (1%)

Query: 64  TQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDY 123
           T    T  ++ A   FD++PE D V +  M  GY R       + LF ++  S + PD++
Sbjct: 314 TGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEF 373

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           +  S+L ACA +GA  LE G+    +  K  + ++ ++   LI++Y +C +VE A++IF 
Sbjct: 374 TMVSILTACAHLGA--LELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFN 431

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
            + +    ++ A+I   A +    EAL++F  + E ++ P ++T +  + +C  +G +  
Sbjct: 432 EMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAK 491

Query: 244 GK-WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAY 301
           GK +      ++G+   +     ++D+  + G L +A+ V  NM  K ++  W +++ A 
Sbjct: 492 GKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGAC 551

Query: 302 ATH 304
             H
Sbjct: 552 RVH 554


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/551 (38%), Positives = 321/551 (58%), Gaps = 25/551 (4%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKT-HLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFD 80
           S+LP C+    L   K++HA  +K   L  +  V + L++ +C      S       +FD
Sbjct: 220 SVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFD 279

Query: 81  RIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS-GLLPDDYSFPSLLKACACVGAEA 139
           R     I L+N M  GYS+++    A+ LF+ +  S GLL +  +   ++ AC   GA +
Sbjct: 280 R----KIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFS 335

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
            +E   +H F +K GL+ + +V  TL+++Y+    ++ A RIF  + +  +V++N +IT 
Sbjct: 336 RKEA--IHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITG 393

Query: 200 YARSSRPNEALSLFRELQ--ER---------NLKPTDVTMLSALSSCALLGSLDLGKWIH 248
           Y  S    +AL L  ++Q  ER         +LKP  +T+++ L SCA L +L  GK IH
Sbjct: 394 YVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIH 453

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
            Y  K  L   V V +AL+DM+AKCG L  +  VFD +  K+   W+ +I+AY  HG G 
Sbjct: 454 AYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQ 513

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
           ++I +   MM   V P+E+TF+ +  ACSH+G+VDEG   FY M+  YG+ P   HY C+
Sbjct: 514 EAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACV 573

Query: 369 VDLLGRAGRLDEAYRFIDELPIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
           VDLLGRAGR+ EAY+ ++ +P   +    W +LL +   HNNL + +   + + +L+ + 
Sbjct: 574 VDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNV 633

Query: 428 GGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYS 487
              YV+L+N+ + AG W+    +R+ MK++GV K PGCS IE  + V +F +GD  H  S
Sbjct: 634 ASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQS 693

Query: 488 TDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGT 547
             L   L+ L + ++  GYVPDTS V H ++E++EKEI L  HSEKLAI FG+LNT PGT
Sbjct: 694 EKLSGYLETLWERMRKEGYVPDTSCVLH-NVEEDEKEILLCGHSEKLAIAFGILNTSPGT 752

Query: 548 TIRVVKNLRVC 558
            IRV KNLRVC
Sbjct: 753 IIRVAKNLRVC 763



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 135/234 (57%), Gaps = 9/234 (3%)

Query: 117 GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN-SNLYVCTTLINLYAECSDV 175
           G+ PD+Y+FP+LLKA A +  + +E GKQ+H    K G    ++ V  TL+NLY +C D 
Sbjct: 5   GIKPDNYAFPALLKAVADL--QDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDF 62

Query: 176 EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSC 235
            A  ++F+ ISE   VS+N++I++     +   AL  FR + + N++P+  T++S +++C
Sbjct: 63  GAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTAC 122

Query: 236 ALL---GSLDLGKWIHEY-IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDT 291
           + L     L +GK +H Y ++K  L+ ++ +NT L+ M+ K G+L  +  +  +  G+D 
Sbjct: 123 SNLPMPEGLMMGKQVHAYGLRKGELNSFI-INT-LVAMYGKLGKLASSKVLLGSFGGRDL 180

Query: 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
             W+ ++ +   + Q  +++    EM+   V PDE T   +L ACSH  ++  G
Sbjct: 181 VTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTG 234



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 180/370 (48%), Gaps = 12/370 (3%)

Query: 38  KQIHAVTIKTHLQND-LNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           KQIHA   K     D + V   L+N   +          + +FDRI E + V +N++   
Sbjct: 30  KQIHAHVYKFGYGVDSVTVANTLVNLYRK---CGDFGAVYKVFDRISERNQVSWNSLISS 86

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA-EALEEGKQLHCFAIKLG- 154
               +    A+  F  +L+  + P  ++  S++ AC+ +   E L  GKQ+H + ++ G 
Sbjct: 87  LCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGE 146

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           LNS  ++  TL+ +Y +   + +++ +  +     +V++N ++++  ++ +  EAL   R
Sbjct: 147 LNS--FIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLR 204

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG-LDKYVKVNTALIDMHAKC 273
           E+    ++P + T+ S L +C+ L  L  GK +H Y  K G LD+   V +AL+DM+  C
Sbjct: 205 EMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNC 264

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK-AQVSPDEITFLGL 332
            ++     VFD M  +    W+AMI  Y+ +    +++L+F  M + A +  +  T  G+
Sbjct: 265 KQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGV 324

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           + AC  +G         +    K G+         ++D+  R G++D A R   ++  + 
Sbjct: 325 VPACVRSGAFSRK-EAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRD 383

Query: 393 TPILWRTLLS 402
             + W T+++
Sbjct: 384 L-VTWNTMIT 392


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/562 (37%), Positives = 329/562 (58%), Gaps = 32/562 (5%)

Query: 23  NALSLLPRCT---SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLF 79
           N  ++L  C    +FR  +++HA  IKT     + + T+LI   T+     S+  AH +F
Sbjct: 245 NYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTK---CDSLGDAHNVF 301

Query: 80  DRIPEPDIVLFNTMARGYSRSKTPIRAIFLF---VELLNSGLL----------------- 119
           D +PE ++V +  M   YS+     +A+ LF   V++  +G+                  
Sbjct: 302 DEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCT 361

Query: 120 -PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAA 178
            P++++F ++L +C       L  G+Q+H   IKL    +++V ++L+++YA+   +  A
Sbjct: 362 EPNEFTFATVLTSCTSSLGFIL--GRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEA 419

Query: 179 RRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL 238
           R +FE + E  VVS  AII+ YA+     EAL LFR LQ   +K   VT    L++ + L
Sbjct: 420 RTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGL 479

Query: 239 GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMI 298
            +LDLGK +H ++ +  +  +V +  +LIDM++KCG L  +  +FD M  +   +W+AM+
Sbjct: 480 AALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAML 539

Query: 299 VAYATHGQGHKSILMFEEMMK-AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD-KY 356
           V Y+ HG+G + + +F  M +  +V PD +T L +L  CSH GL D+G N F  M   K 
Sbjct: 540 VGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKI 599

Query: 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQV 416
            + P ++HYGC+VDLLGR+GR++EA+ FI ++P + T  +W +LL +C  H+N+ + +  
Sbjct: 600 EVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEFA 659

Query: 417 IERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVRE 476
            +++ E++  + G+YVILSNL A AGRWEDV  LR LM  + V K PG SSIE++ V+  
Sbjct: 660 GQQLLEIEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSSIELDQVLHT 719

Query: 477 FFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAI 536
           F + D  H    ++   + EL    K VGYVPD S V H D+++E+KE  L  HSEKLA+
Sbjct: 720 FHASDRSHPRREEICMKVKELSTSFKEVGYVPDLSCVLH-DVDEEQKEKILLGHSEKLAL 778

Query: 537 TFGLLNTPPGTTIRVVKNLRVC 558
           +FGL+ +P    IRV+KNLR+C
Sbjct: 779 SFGLIASPASVPIRVIKNLRIC 800


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/551 (38%), Positives = 321/551 (58%), Gaps = 25/551 (4%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKT-HLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFD 80
           S+LP C+    L   K++HA  +K   L  +  V + L++ +C      S       +FD
Sbjct: 307 SVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFD 366

Query: 81  RIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS-GLLPDDYSFPSLLKACACVGAEA 139
           R     I L+N M  GYS+++    A+ LF+ +  S GLL +  +   ++ AC   GA +
Sbjct: 367 R----KIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFS 422

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
            +E   +H F +K GL+ + +V  TL+++Y+    ++ A RIF  + +  +V++N +IT 
Sbjct: 423 RKEA--IHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITG 480

Query: 200 YARSSRPNEALSLFRELQ--ER---------NLKPTDVTMLSALSSCALLGSLDLGKWIH 248
           Y  S    +AL L  ++Q  ER         +LKP  +T+++ L SCA L +L  GK IH
Sbjct: 481 YVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIH 540

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
            Y  K  L   V V +AL+DM+AKCG L  +  VFD +  K+   W+ +I+AY  HG G 
Sbjct: 541 AYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQ 600

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
           ++I +   MM   V P+E+TF+ +  ACSH+G+VDEG   FY M+  YG+ P   HY C+
Sbjct: 601 EAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACV 660

Query: 369 VDLLGRAGRLDEAYRFIDELPIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
           VDLLGRAGR+ EAY+ ++ +P   +    W +LL +   HNNL + +   + + +L+ + 
Sbjct: 661 VDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNV 720

Query: 428 GGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYS 487
              YV+L+N+ + AG W+    +R+ MK++GV K PGCS IE  + V +F +GD  H  S
Sbjct: 721 ASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQS 780

Query: 488 TDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGT 547
             L   L+ L + ++  GYVPDTS V H ++E++EKEI L  HSEKLAI FG+LNT PGT
Sbjct: 781 EKLSGYLETLWERMRKEGYVPDTSCVLH-NVEEDEKEILLCGHSEKLAIAFGILNTSPGT 839

Query: 548 TIRVVKNLRVC 558
            IRV KNLRVC
Sbjct: 840 IIRVAKNLRVC 850



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 150/270 (55%), Gaps = 13/270 (4%)

Query: 81  RIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEAL 140
           R PE  I L     R   RS     A+  +V+++  G+ PD+Y+FP+LLKA A +  + +
Sbjct: 60  RSPEWWIDLL----RSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADL--QDM 113

Query: 141 EEGKQLHCFAIKLGLN-SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
           E GKQ+H    K G    ++ V  TL+NLY +C D  A  ++F+ ISE   VS+N++I++
Sbjct: 114 ELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISS 173

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL---GSLDLGKWIHEY-IKKYG 255
                +   AL  FR + + N++P+  T++S +++C+ L     L +GK +H Y ++K  
Sbjct: 174 LCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGE 233

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
           L+ ++ +NT L+ M+ K G+L  +  +  +  G+D   W+ ++ +   + Q  +++    
Sbjct: 234 LNSFI-INT-LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLR 291

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
           EM+   V PDE T   +L ACSH  ++  G
Sbjct: 292 EMVLEGVEPDEFTISSVLPACSHLEMLRTG 321



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 180/370 (48%), Gaps = 12/370 (3%)

Query: 38  KQIHAVTIKTHLQND-LNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           KQIHA   K     D + V   L+N   +          + +FDRI E + V +N++   
Sbjct: 117 KQIHAHVYKFGYGVDSVTVANTLVNLYRK---CGDFGAVYKVFDRISERNQVSWNSLISS 173

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA-EALEEGKQLHCFAIKLG- 154
               +    A+  F  +L+  + P  ++  S++ AC+ +   E L  GKQ+H + ++ G 
Sbjct: 174 LCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGE 233

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           LNS  ++  TL+ +Y +   + +++ +  +     +V++N ++++  ++ +  EAL   R
Sbjct: 234 LNS--FIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLR 291

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG-LDKYVKVNTALIDMHAKC 273
           E+    ++P + T+ S L +C+ L  L  GK +H Y  K G LD+   V +AL+DM+  C
Sbjct: 292 EMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNC 351

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK-AQVSPDEITFLGL 332
            ++     VFD M  +    W+AMI  Y+ +    +++L+F  M + A +  +  T  G+
Sbjct: 352 KQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGV 411

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           + AC  +G         +    K G+         ++D+  R G++D A R   ++  + 
Sbjct: 412 VPACVRSGAFSRK-EAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRD 470

Query: 393 TPILWRTLLS 402
             + W T+++
Sbjct: 471 L-VTWNTMIT 479


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/551 (38%), Positives = 321/551 (58%), Gaps = 25/551 (4%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKT-HLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFD 80
           S+LP C+    L   K++HA  +K   L  +  V + L++ +C      S       +FD
Sbjct: 307 SVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFD 366

Query: 81  RIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS-GLLPDDYSFPSLLKACACVGAEA 139
           R     I L+N M  GYS+++    A+ LF+ +  S GLL +  +   ++ AC   GA +
Sbjct: 367 R----KIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFS 422

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
            +E   +H F +K GL+ + +V  TL+++Y+    ++ A RIF  + +  +V++N +IT 
Sbjct: 423 RKEA--IHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITG 480

Query: 200 YARSSRPNEALSLFRELQ--ER---------NLKPTDVTMLSALSSCALLGSLDLGKWIH 248
           Y  S    +AL L  ++Q  ER         +LKP  +T+++ L SCA L +L  GK IH
Sbjct: 481 YVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIH 540

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
            Y  K  L   V V +AL+DM+AKCG L  +  VFD +  K+   W+ +I+AY  HG G 
Sbjct: 541 AYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQ 600

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
           ++I +   MM   V P+E+TF+ +  ACSH+G+VDEG   FY M+  YG+ P   HY C+
Sbjct: 601 EAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACV 660

Query: 369 VDLLGRAGRLDEAYRFIDELPIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
           VDLLGRAGR+ EAY+ ++ +P   +    W +LL +   HNNL + +   + + +L+ + 
Sbjct: 661 VDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNV 720

Query: 428 GGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYS 487
              YV+L+N+ + AG W+    +R+ MK++GV K PGCS IE  + V +F +GD  H  S
Sbjct: 721 ASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQS 780

Query: 488 TDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGT 547
             L   L+ L + ++  GYVPDTS V H ++E++EKEI L  HSEKLAI FG+LNT PGT
Sbjct: 781 EKLSGYLETLWERMRKEGYVPDTSCVLH-NVEEDEKEILLCGHSEKLAIAFGILNTSPGT 839

Query: 548 TIRVVKNLRVC 558
            IRV KNLRVC
Sbjct: 840 IIRVAKNLRVC 850



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 150/270 (55%), Gaps = 13/270 (4%)

Query: 81  RIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEAL 140
           R PE  I L     R   RS     A+  +V+++  G+ PD+Y+FP+LLKA A +  + +
Sbjct: 60  RSPEWWIDLL----RSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADL--QDM 113

Query: 141 EEGKQLHCFAIKLGLN-SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
           E GKQ+H    K G    ++ V  TL+NLY +C D  A  ++F+ ISE   VS+N++I++
Sbjct: 114 ELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISS 173

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL---GSLDLGKWIHEY-IKKYG 255
                +   AL  FR + + N++P+  T++S +++C+ L     L +GK +H Y ++K  
Sbjct: 174 LCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGE 233

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
           L+ ++ +NT L+ M+ K G+L  +  +  +  G+D   W+ ++ +   + Q  +++    
Sbjct: 234 LNSFI-INT-LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLR 291

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
           EM+   V PDE T   +L ACSH  ++  G
Sbjct: 292 EMVLEGVEPDEFTISSVLPACSHLEMLRTG 321



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 180/370 (48%), Gaps = 12/370 (3%)

Query: 38  KQIHAVTIKTHLQND-LNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           KQIHA   K     D + V   L+N   +          + +FDRI E + V +N++   
Sbjct: 117 KQIHAHVYKFGYGVDSVTVANTLVNLYRK---CGDFGAVYKVFDRISERNQVSWNSLISS 173

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA-EALEEGKQLHCFAIKLG- 154
               +    A+  F  +L+  + P  ++  S++ AC+ +   E L  GKQ+H + ++ G 
Sbjct: 174 LCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGE 233

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           LNS  ++  TL+ +Y +   + +++ +  +     +V++N ++++  ++ +  EAL   R
Sbjct: 234 LNS--FIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLR 291

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG-LDKYVKVNTALIDMHAKC 273
           E+    ++P + T+ S L +C+ L  L  GK +H Y  K G LD+   V +AL+DM+  C
Sbjct: 292 EMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNC 351

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK-AQVSPDEITFLGL 332
            ++     VFD M  +    W+AMI  Y+ +    +++L+F  M + A +  +  T  G+
Sbjct: 352 KQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGV 411

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           + AC  +G         +    K G+         ++D+  R G++D A R   ++  + 
Sbjct: 412 VPACVRSGAFSRK-EAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRD 470

Query: 393 TPILWRTLLS 402
             + W T+++
Sbjct: 471 L-VTWNTMIT 479


>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/522 (39%), Positives = 309/522 (59%), Gaps = 27/522 (5%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           L QIHA     +L ++  V+T+LI   + + +  S+++A  +F     P++ +FN + RG
Sbjct: 56  LHQIHAQIFLHNLFSNSRVVTQLI---SSSCSLKSLDYALSIFRCFDHPNLFVFNALIRG 112

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
            + +     ++  FV +L   + PD  + P +LK+ A +    L  G+ LH   +KLGL 
Sbjct: 113 LAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGL--GRCLHGGVMKLGLE 170

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            + +V  +L+++Y +  ++    ++F+                   S + N+A S+   L
Sbjct: 171 FDSFVRVSLVDMYVKIGELGFGLQLFD------------------ESPQRNKAESI---L 209

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
               ++P D+T++SAL +C  +G+L +G+ IH Y+   G      + TAL+DM+AKCG +
Sbjct: 210 LWNGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNI 269

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
             A  VF    GKD   WS MI  +A HG   +++  F +M  A ++PDE+ FL +L AC
Sbjct: 270 KSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTAC 329

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           SH+G VD+G N+F SMR  Y I P +KHY  +VDLLGRAGRLDEA  FI  +PI    ++
Sbjct: 330 SHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVI 389

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
           W  L  +C +H N+ +A+   E++ +L+  H G YV LSN+ A  GRWEDV+ +R LMK+
Sbjct: 390 WGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKN 449

Query: 457 RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHG 516
           RGV K PG S IEV   V  F +GD  H  + ++   L+E+    K  GY+P+T+ V H 
Sbjct: 450 RGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAWVLH- 508

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           ++E+EEKE AL  HSEKLA+ FGL++T PG+TIR+VKNLRVC
Sbjct: 509 NIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVC 550



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 122/288 (42%), Gaps = 29/288 (10%)

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
            +  L +  Q+H       L SN  V T LI+       ++ A  IF     P +  +NA
Sbjct: 49  ASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNA 108

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +I   A +SR   ++S F  +   +++P  +T+   L S A L  + LG+ +H  + K G
Sbjct: 109 LIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLG 168

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
           L+    V  +L+DM+ K G L   + +FD    ++                  +SIL++ 
Sbjct: 169 LEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKA----------------ESILLWN 212

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEG---WNYFYSMRDKYGIVPGIKHYGCMVDLL 372
                 V P+++T +  L AC+  G +  G    NY  S  + + +  GI     +VD+ 
Sbjct: 213 -----GVRPNDLTVVSALLACTKIGALQVGERIHNYLSS--NGFQLNRGIG--TALVDMY 263

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
            + G +  A R   E   K   + W  ++   + H     A Q   ++
Sbjct: 264 AKCGNIKSASRVFVETKGKDL-LTWSVMIWGWAIHGCFDQALQCFVKM 310


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/521 (36%), Positives = 320/521 (61%), Gaps = 7/521 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +Q+HA  +K   +  + + T+LI    +     +++ A  + D +PE ++V +  M  GY
Sbjct: 61  RQVHAHMVKARYRPPVYLATRLIILYVR---CGALDDARNVLDGMPERNVVSWTAMISGY 117

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           S+S     A+ LF+ +L +G   ++++  ++L +C     +++++ +Q+H   +K    S
Sbjct: 118 SQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPV--HQSIQQVEQVHSLVVKTNFES 175

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           +++V ++L+++Y +  +++ AR++F+ + E   VS  AII+ YA+    +EAL LFR+L 
Sbjct: 176 HMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLY 235

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              ++   VT  + L+S + L SL+ GK +H  I +  L  ++ +  +LIDM++KCG+L 
Sbjct: 236 SSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLL 295

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            +  VFDNM  +   +W+AM++ Y  HG G + + +F  M + +V PD +T L +L  CS
Sbjct: 296 YSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTE-EVKPDSVTLLAVLSGCS 354

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H GLVDEG + F  +  +   V  I HYGC++DLLGR+G+L +A   I+ +P + TP +W
Sbjct: 355 HGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTPAIW 414

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
            +LL +C  H N+ + + V +++ +++  + G+YVILSN+ A AG W+DV  +RKLM + 
Sbjct: 415 GSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGMWKDVFRVRKLMLEN 474

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
            V K P  S I ++ V+  F S +  H    D+   + E+  ++K  G+VPD S V H D
Sbjct: 475 TVTKEPAKSWIILDKVIHTFHSSERFHPRKKDINAKIKEVYVDVKAAGFVPDLSCVLH-D 533

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           ++DE+KE  L  HSEKLAITFGL+NTPPG TI+V+KNLR+C
Sbjct: 534 VDDEQKERMLLGHSEKLAITFGLMNTPPGLTIQVMKNLRIC 574



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 150/286 (52%), Gaps = 5/286 (1%)

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
           ACV  +AL EG+Q+H   +K      +Y+ T LI LY  C  ++ AR + + + E  VVS
Sbjct: 50  ACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPERNVVS 109

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           + A+I+ Y++S R  EAL LF  +     K  + T+ + L+SC +  S+   + +H  + 
Sbjct: 110 WTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQVHSLVV 169

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           K   + ++ V ++L+DM+ K G + +A  VFD +  +DT + +A+I  YA  G   +++ 
Sbjct: 170 KTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALD 229

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           +F ++  + +  + +TF  LL + S    ++ G    + +  +  +   I     ++D+ 
Sbjct: 230 LFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYG-KQVHGLILRKELPFFIVLQNSLIDMY 288

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
            + G+L  + R  D +P +S  I W  +L     H   G+ ++V++
Sbjct: 289 SKCGKLLYSRRVFDNMPQRSA-ISWNAMLMGYGRH---GIGQEVVQ 330



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 155/282 (54%), Gaps = 8/282 (2%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           L+  P   S + ++Q+H++ +KT+ ++ + V + L++   +   + +++ A  +FD +PE
Sbjct: 149 LTSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGK---SGNIQEARKVFDMLPE 205

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
            D V    +  GY++      A+ LF +L +SG+  +  +F +LL + +  G  +L  GK
Sbjct: 206 RDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLS--GLASLNYGK 263

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           Q+H   ++  L   + +  +LI++Y++C  +  +RR+F+N+ +   +S+NA++  Y R  
Sbjct: 264 QVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHG 323

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI-KKYGLDKYVKVN 263
              E + LFR + E  +KP  VT+L+ LS C+  G +D G  I + I K+     ++   
Sbjct: 324 IGQEVVQLFRTMTE-EVKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHY 382

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQA-WSAMIVAYATH 304
             +ID+  + G+L  A+ + ++M  + T A W +++ A   H
Sbjct: 383 GCVIDLLGRSGQLQKALDLIEHMPFEPTPAIWGSLLGACRVH 424



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 99/198 (50%), Gaps = 7/198 (3%)

Query: 230 SALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK 289
           +A+++C    +L  G+ +H ++ K      V + T LI ++ +CG LDDA +V D M  +
Sbjct: 46  AAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPER 105

Query: 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS-HTGLVDEGWNY 348
           +  +W+AMI  Y+  G+  +++ +F  M++A    +E T   +L +C  H  +  +    
Sbjct: 106 NVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSI--QQVEQ 163

Query: 349 FYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408
            +S+  K      +     ++D+ G++G + EA +  D LP + T     +  +  S + 
Sbjct: 164 VHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTV----SCTAIISGYA 219

Query: 409 NLGLAKQVIERIFELDDS 426
            LGL  + ++   +L  S
Sbjct: 220 QLGLDDEALDLFRQLYSS 237


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/555 (38%), Positives = 317/555 (57%), Gaps = 16/555 (2%)

Query: 11  QSPPPKLCTNTP--NALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFC-- 63
           Q+ P + C+     +   LL   T  R L   +QIHA  IK+ LQ    V   LINF   
Sbjct: 42  QNSPNRFCSEKKYGHICDLLLSQTRSRSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSK 101

Query: 64  TQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDY 123
           TQ P  SS      +F+         ++++   +++++ P+ AI  F  ++   L PDD+
Sbjct: 102 TQLPLLSSQ-----VFEESERKSSTTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDH 156

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
            FPS  KACA +G    + GK +HC  IK G + +++V ++L+++YA+C D++ AR +F+
Sbjct: 157 IFPSATKACAILGR--CDVGKSVHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFD 214

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
            +    VVS++ +I  Y +     EA+ LF+E     L   D T+ S +  C     L+L
Sbjct: 215 EMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLEL 274

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303
           GK IH    K   D    V ++LI +++KCG ++ A  VFD +  K+   W+AM++A A 
Sbjct: 275 GKQIHGLCFKTSYDLSGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQ 334

Query: 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK 363
           H    ++  +F +M  A + P+ ITFL +LYACSH GLV+EG  YF  M+ KY I PG +
Sbjct: 335 HAHTKEAFDLFTKMENAGMRPNFITFLCVLYACSHAGLVEEGKKYFALMK-KYEIEPGTQ 393

Query: 364 HYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
           HY  MVDLLGRAG+L EA   I  +P + T  +W   ++ C  H N  LA    +++FEL
Sbjct: 394 HYASMVDLLGRAGKLQEALSVIKGMPTEPTESVWGAFITGCRIHGNTDLAAFAADKVFEL 453

Query: 424 DDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGV 483
                G +V+LSN  A AGR+ED    RK+++DRGV K  G S IE  N V +F +GD  
Sbjct: 454 GAVSSGLHVMLSNAYAAAGRYEDAAKARKMLRDRGVKKETGLSWIEEGNRVHKFAAGDRF 513

Query: 484 HSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNT 543
           H    ++ + L++L +E++  GYV DTS V   ++  EEK   +RYHSE+LAI FGL++ 
Sbjct: 514 HVRMKEIYQKLEDLGEEMERAGYVADTSFVLR-EVGSEEKNQTIRYHSERLAIAFGLISI 572

Query: 544 PPGTTIRVVKNLRVC 558
           P G  IR++KNLRVC
Sbjct: 573 PLGRPIRIMKNLRVC 587


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/524 (37%), Positives = 308/524 (58%), Gaps = 13/524 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           ++I A T+ +   +D  V   LIN  ++     S+E A  +FDR+   D++ +NTM  GY
Sbjct: 183 REIEARTVASGYASDSIVQNALINMYSK---CGSLESARKVFDRLKNRDVIAWNTMISGY 239

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           ++     +A+ LF  +  +   P+  +F  LL AC  +  E LE+G+ +H    + G  S
Sbjct: 240 AKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNL--EDLEQGRAIHRKVKEHGYES 297

Query: 158 NLYVCTTLINLYAECSD-VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
           +L +   L+N+Y +CS  +E AR++FE +    V+++N +I AY +  +  +AL +F+++
Sbjct: 298 DLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQM 357

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           Q  N+ P ++T+ + LS+CA+LG+   GK +H  I        V +  +L++M+ +CG L
Sbjct: 358 QLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSL 417

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           DD V VF  +  K   +WS +I AYA HG     +  F E+++  ++ D++T +  L AC
Sbjct: 418 DDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSAC 477

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           SH G++ EG   F SM   +G+ P  +H+ CMVDLL RAGRL+ A   I ++P     + 
Sbjct: 478 SHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVA 537

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFEL--DDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454
           W +LLS C  HN+   A +V +++FEL  +D H     +LSN+ A AGRW+DV   RK  
Sbjct: 538 WTSLLSGCKLHNDTKRAARVADKLFELESEDEH-STVTLLSNVYAEAGRWDDV---RKTR 593

Query: 455 KDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVH 514
             R   K PGCS IE+N+ V EF +GD  H     +   +  L K++K  GYVPD  +V 
Sbjct: 594 NRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVL 653

Query: 515 HGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           H ++++EEKE  L YHSEKLAI +GL++TPPGT + +VKNLR C
Sbjct: 654 H-NVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRAC 696



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 125/445 (28%), Positives = 232/445 (52%), Gaps = 29/445 (6%)

Query: 31  CTSFRGLKQ---IHAVTIKTHL-QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPD 86
           C+S + LKQ   +HA+ ++T L + D+ + T LI   T       +E A   FD + +  
Sbjct: 68  CSSSKDLKQGQLLHAMILETQLLEFDIILGTALI---TMYARCRDLELARKTFDEMGKKT 124

Query: 87  IVLFNTMARGYSRSKTPIRAIFLFVELLNS---GLLPDDYSFPSLLKACACVGAEALEEG 143
           +V +N +  GYSR+     A+ ++ ++++    G+ PD  +F S L AC+ VG   + +G
Sbjct: 125 LVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGD--ISQG 182

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
           +++    +  G  S+  V   LIN+Y++C  +E+AR++F+ +    V+++N +I+ YA+ 
Sbjct: 183 REIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQ 242

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
               +AL LF+ +   + KP  VT +  L++C  L  L+ G+ IH  +K++G +  + + 
Sbjct: 243 GAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIG 302

Query: 264 TALIDMHAKC-GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
             L++M+ KC   L++A  VF+ +  +D   W+ +IVAY  +GQ   ++ +F++M    V
Sbjct: 303 NVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENV 362

Query: 323 SPDEITFLGLLYACSHTGLVDEG---WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
           +P+EIT   +L AC+  G   +G        S R K  +V        ++++  R G LD
Sbjct: 363 APNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVL----ENSLMNMYNRCGSLD 418

Query: 380 EAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL--DDSHGGDYVILSNL 437
           +       +  KS  + W TL+++ + H   G ++  +E  +EL  +     D  ++S L
Sbjct: 419 DTVGVFAAIRDKSL-VSWSTLIAAYAQH---GHSRTGLEHFWELLQEGLAADDVTMVSTL 474

Query: 438 --CARAGRW-EDVDYLRKLMKDRGV 459
             C+  G   E V     ++ D G+
Sbjct: 475 SACSHGGMLKEGVQSFLSMVGDHGL 499



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 121/255 (47%), Gaps = 9/255 (3%)

Query: 168 LYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT 227
           +Y +C  V  A  +F  I  P  VS+  I+ A+AR+    EAL  +R +    L+P    
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 228 MLSALSSCALLGSLDLGKWIHEYIKKYGLDKY-VKVNTALIDMHAKCGRLDDAVSVFDNM 286
            + A+  C+    L  G+ +H  I +  L ++ + + TALI M+A+C  L+ A   FD M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ---VSPDEITFLGLLYACSHTGLVD 343
             K    W+A+I  Y+ +G    ++ ++++M+      + PD ITF   LYACS  G + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 344 EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
           +G     +     G          ++++  + G L+ A +  D L  +   I W T++S 
Sbjct: 181 QG-REIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDV-IAWNTMISG 238

Query: 404 CSSHNNLGLAKQVIE 418
            +     G A Q +E
Sbjct: 239 YAKQ---GAATQALE 250


>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/565 (36%), Positives = 330/565 (58%), Gaps = 26/565 (4%)

Query: 14  PPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSME 73
           P     N P   +L  +C +F  LKQIH   I T L      L+ LI   ++     ++ 
Sbjct: 142 PKNHIFNHPTLQTLQQKCNNFNTLKQIHTQIITTGLSFQTYCLSHLIKISSK----FNLP 197

Query: 74  HAHLLFDRIPEPDIVLFNTMARGY--SRSKTPIRAIF-LFVELL-NSGLLPDDYSFPSLL 129
           +A  +F+ I  P I L+NT+        ++  I   F L+ ++L N  L P+ ++FPSL 
Sbjct: 198 YAFKIFNYISNPTIFLYNTLISSLINQTNQNQIHLAFSLYNKILTNKNLQPNSFTFPSLF 257

Query: 130 KACACVGAEALEEGKQLHCFAIK-LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP 188
           KAC C        G  LH   +K L    + +V  +L+N YA+   +  +R IF+ I+EP
Sbjct: 258 KAC-CSNQSWFHYGPLLHTHVLKFLQPPFDNFVQASLLNFYAKYGKMCVSRYIFDRINEP 316

Query: 189 CVVSYNAIITAYARSSRPN-------------EALSLFRELQERNLKPTDVTMLSALSSC 235
            + ++N I+ AYARSS  +             E+L LFR++Q   ++P +VT+++ +S+C
Sbjct: 317 DLATWNVILNAYARSSSYHSYSNSFDDADFSLESLYLFRDMQVIGIRPNEVTIVALISAC 376

Query: 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM--SGKDTQA 293
           + LG++  G W+H ++ +  +     V TA +DM++KCG L+ A  VFD M  + +D+  
Sbjct: 377 SNLGAVSQGFWVHCFVLRNKIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFC 436

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           ++AMI  +A HG G++++ ++ +M    + PD  TF+  ++ACSH GLV+EG   F SM+
Sbjct: 437 YTAMIGGFAVHGYGNQALELYRKMKFKGLVPDSATFVVTMFACSHVGLVEEGLEIFKSMK 496

Query: 354 DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413
           + +G+ P ++HYGC++DLLGRAGRL EA  ++ ++P+K   +LWR+LL +   H NLG+ 
Sbjct: 497 EVHGVEPKLEHYGCLIDLLGRAGRLKEAEEWLADMPMKPNAVLWRSLLGAARIHGNLGVG 556

Query: 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNV 473
           +  + ++ EL+    G+YV+LSN+ A  GR  DV  +RKLMK  GV K+PG S +E+   
Sbjct: 557 EVALTKLIELEPETSGNYVLLSNMYASVGRVNDVKRVRKLMKHHGVNKLPGFSLVEIKGA 616

Query: 474 VREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEK 533
           + EF +GD  H +S ++   + E+   L+  G+   TS     D+E+E+KE  L YHSE+
Sbjct: 617 MHEFLTGDRSHPFSKEIYLKIAEINSRLEEYGHKARTSEALF-DLEEEDKEGVLSYHSER 675

Query: 534 LAITFGLLNTPPGTTIRVVKNLRVC 558
           LAI F L+ +P    IR++KNLRVC
Sbjct: 676 LAIAFALIASPSSLAIRIIKNLRVC 700


>gi|224133278|ref|XP_002321528.1| predicted protein [Populus trichocarpa]
 gi|222868524|gb|EEF05655.1| predicted protein [Populus trichocarpa]
          Length = 450

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/436 (41%), Positives = 279/436 (63%), Gaps = 5/436 (1%)

Query: 35  RGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMA 94
           + LKQIHA  I+   + +  V+ K+I FC        M +A  +F++I +PD  +FNTM 
Sbjct: 2   KDLKQIHARVIQLGFEQNRFVVGKVIVFCAA-AEHGDMNYAVSVFEKIGDPDAFIFNTMI 60

Query: 95  RGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
           RG+ ++  P +A   +  +   GL+ D ++F  LLK C  +G   L  G+ +HC  +K G
Sbjct: 61  RGFGKANDPRKAFDYYKRMQERGLVSDSFTFSFLLKVCGQLGLVLL--GRLMHCSTLKRG 118

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           LNS+++V  TL+++Y    D+EA+R++FE I  P +V++N II  +    + NEAL +F 
Sbjct: 119 LNSHVFVRNTLVHMYGTFKDIEASRQLFEEIPNPELVAWNIIIDCHVSCGKFNEALEMFS 178

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
            + +  ++P + T +  LS+C+ LG+LD G+W+H  I   G     +VN +L+DM+AKCG
Sbjct: 179 RMLKFGIEPDEATFVVILSACSALGALDFGRWVHSCISNIGHGCITEVNNSLLDMYAKCG 238

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV-SPDEITFLGLL 333
            L +A  +F+ M+ K+T  W+ MI+  A+HG  ++++ +F  M++ ++ +PD+ITFL +L
Sbjct: 239 ALQEAFEIFNGMNKKNTVTWNTMILGLASHGYANEALALFSNMLEQKLWAPDDITFLVVL 298

Query: 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
            ACSH G+VD+GW +F  M+ +Y I P IKHYGCMVD+LGRAG ++EAYR I  +P++  
Sbjct: 299 SACSHGGMVDKGWRFFDIMKKEYHIQPTIKHYGCMVDILGRAGFVEEAYRLISNMPMQCN 358

Query: 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKL 453
            I+WRTLL++C  H N+ L KQV +++ EL+  H  DYV+L+N  A AGRW +   +RK 
Sbjct: 359 AIVWRTLLAACRLHGNVELGKQVRKQLLELEPDHSSDYVLLANTYASAGRWNEAMRVRKT 418

Query: 454 MKDRGVLK-VPGCSSI 468
           M  RGV K  PG S +
Sbjct: 419 MHKRGVQKPEPGNSVV 434



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 167/344 (48%), Gaps = 30/344 (8%)

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINL--YAECSDVEAARRIFENISEPCVVSYNAII 197
           +++ KQ+H   I+LG   N +V   +I     AE  D+  A  +FE I +P    +N +I
Sbjct: 1   MKDLKQIHARVIQLGFEQNRFVVGKVIVFCAAAEHGDMNYAVSVFEKIGDPDAFIFNTMI 60

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
             + +++ P +A   ++ +QER L     T    L  C  LG + LG+ +H    K GL+
Sbjct: 61  RGFGKANDPRKAFDYYKRMQERGLVSDSFTFSFLLKVCGQLGLVLLGRLMHCSTLKRGLN 120

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
            +V V   L+ M+     ++ +  +F+ +   +  AW+ +I  + + G+ ++++ MF  M
Sbjct: 121 SHVFVRNTLVHMYGTFKDIEASRQLFEEIPNPELVAWNIIIDCHVSCGKFNEALEMFSRM 180

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC-------MVD 370
           +K  + PDE TF+ +L ACS  G +D G       R  +  +  I H GC       ++D
Sbjct: 181 LKFGIEPDEATFVVILSACSALGALDFG-------RWVHSCISNIGH-GCITEVNNSLLD 232

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN----NLGLAKQVIE-RIFELDD 425
           +  + G L EA+   + +  K+T + W T++   +SH      L L   ++E +++  DD
Sbjct: 233 MYAKCGALQEAFEIFNGMNKKNT-VTWNTMILGLASHGYANEALALFSNMLEQKLWAPDD 291

Query: 426 SHGGDYVILSNLCARAGR----WEDVDYLRKLMKDRGVLKVPGC 465
                ++++ + C+  G     W   D ++K    +  +K  GC
Sbjct: 292 I---TFLVVLSACSHGGMVDKGWRFFDIMKKEYHIQPTIKHYGC 332


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/526 (37%), Positives = 320/526 (60%), Gaps = 6/526 (1%)

Query: 33  SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNT 92
           +F   K +H   +KT  + DL V   L++  T+    + +     +F+ +P+ D++ ++ 
Sbjct: 157 AFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLR---VFEEMPKHDVIPWSF 213

Query: 93  MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
           M   Y++S     A+ LF ++  + +LP+ ++F S+L++CA +  E L+ GKQ+HC  +K
Sbjct: 214 MISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASI--ENLQLGKQVHCHVLK 271

Query: 153 LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL 212
           +GL+ N++V   L+++YA+C  ++ + ++F  +     V++N +I  Y +S   ++ALSL
Sbjct: 272 VGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSL 331

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           ++ + E  ++ ++VT  S L +CA L +++LG  IH    K   DK V V  ALIDM+AK
Sbjct: 332 YKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAK 391

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
           CG + +A  VFD +S +D  +W+AMI  Y+ HG   +++  F+ M + +  P+++TF+ +
Sbjct: 392 CGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSI 451

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L ACS+ GL+D G NYF SM   YGI P ++HY CMV LLGR+G LD+A + I+E+P++ 
Sbjct: 452 LSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEP 511

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452
              +WR LL +C  HN++ L     ++I ++D      +V+LSN+ AR  RW  V  +RK
Sbjct: 512 NVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYARTRRWNSVASVRK 571

Query: 453 LMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSL 512
            MK++GV K PG S IE   +V  F  GD  H     +   L+ L  + +  GYVPD + 
Sbjct: 572 FMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHPDMKMISGMLEWLNMKTEKAGYVPDLNA 631

Query: 513 VHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           V   D+ED+EK+  L  HSE+LA+ FGL+ TP    IR++KNLR+C
Sbjct: 632 VLR-DVEDDEKKRHLWVHSERLALAFGLIRTPSRGHIRILKNLRIC 676



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 220/422 (52%), Gaps = 9/422 (2%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           +HA   K   +++  V T LI+         S+  A   FD I   D+V +  M   Y+ 
Sbjct: 63  LHACIYKLGHESNAFVGTALID---AYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAE 119

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
           +     ++ LF E+   G  P+ ++F  +LKAC  +G EA   GK +H   +K     +L
Sbjct: 120 NDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKAC--IGLEAFSVGKSVHGCVLKTCYEMDL 177

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
           YV   L++LY +  D     R+FE + +  V+ ++ +I+ YA+S++  EA+ LF +++  
Sbjct: 178 YVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRA 237

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
            + P   T  S L SCA + +L LGK +H ++ K GLD  V V+ AL+D++AKCGRLD++
Sbjct: 238 FVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNS 297

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
           + +F  +  ++   W+ MIV Y   G G K++ +++ M++ QV   E+T+  +L AC+  
Sbjct: 298 MKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASL 357

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRT 399
             ++ G    +S+  K      +     ++D+  + G +  A R + ++  +   I W  
Sbjct: 358 AAMELG-TQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNA-RLVFDMLSERDEISWNA 415

Query: 400 LLSSCSSHNNLGLAKQVIERIFELD-DSHGGDYVILSNLCARAGRWE-DVDYLRKLMKDR 457
           ++S  S H  +G A +  + + E +   +   +V + + C+ AG  +   +Y + +++D 
Sbjct: 416 MISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDY 475

Query: 458 GV 459
           G+
Sbjct: 476 GI 477



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 168/343 (48%), Gaps = 12/343 (3%)

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +P+ + V F T+ +GY +S      + LF  +   G   + + F ++LK    V  E  E
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLL--VSVECAE 58

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
               LH    KLG  SN +V T LI+ YA C  V +AR+ F+ I+   +VS+  ++  YA
Sbjct: 59  LAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYA 118

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK--YGLDKY 259
            + R  ++L LF E++     P   T    L +C  L +  +GK +H  + K  Y +D Y
Sbjct: 119 ENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLY 178

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           V V   L+D++ K G  +D + VF+ M   D   WS MI  YA   Q  +++ +F +M +
Sbjct: 179 VGV--GLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRR 236

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
           A V P++ TF  +L +C+    +  G    +    K G+   +     ++D+  + GRLD
Sbjct: 237 AFVLPNQFTFASVLQSCASIENLQLG-KQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLD 295

Query: 380 EAYRFIDELPIKSTPILWRTLL----SSCSSHNNLGLAKQVIE 418
            + +   ELP ++  + W T++     S      L L K ++E
Sbjct: 296 NSMKLFMELPNRN-EVTWNTMIVGYVQSGDGDKALSLYKNMLE 337


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/537 (37%), Positives = 315/537 (58%), Gaps = 9/537 (1%)

Query: 25  LSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           +++L  C S   L   KQIHA  +++   +D+ V T L     +     +++ A  +F+ 
Sbjct: 250 MNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIK---CGAVKDAREVFEC 306

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +P  D++ +NTM  G   S     A  +F  +L   + PD  ++ ++L ACA  G  A  
Sbjct: 307 LPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLAC- 365

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            GK++H  A+K GL S++     LIN+Y++   ++ AR++F+ + +  VVS+ A++  YA
Sbjct: 366 -GKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYA 424

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
              +  E+ S F+++ ++ ++   +T +  L +C+   +L  GK IH  + K G+   + 
Sbjct: 425 DCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLA 484

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V  AL+ M+ KCG ++DA+ V + MS +D   W+ +I   A +G+G +++  FE M   +
Sbjct: 485 VANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEE 544

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           + P+  TF+ ++ AC    LV+EG   F SMR  YGIVP  KHY CMVD+L RAG L EA
Sbjct: 545 MRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEA 604

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
              I  +P K +  +W  LL++C +H N+ + +Q  E+  +L+  + G YV LS + A A
Sbjct: 605 EDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAA 664

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           G W DV  LRKLMK+RGV K PG S IEV   V  F +GD  H  + ++   L+ L K++
Sbjct: 665 GMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQI 724

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K +GYVPDT  V H D++ E KE A+ +HSEKLAI +GL++TPP T IRV KNLRVC
Sbjct: 725 KSLGYVPDTRFVMH-DLDQEGKERAVCHHSEKLAIAYGLISTPPETPIRVSKNLRVC 780



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 117/383 (30%), Positives = 198/383 (51%), Gaps = 16/383 (4%)

Query: 25  LSLLPRCTSFRGL---KQIHAVTIKTHLQND---LNVLTKLINFCTQNPTTSSMEHAHLL 78
           + LL  C   + L   KQ+H   ++  ++ +   +N L KL   C       S+  A  L
Sbjct: 48  VKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHC------GSVNEARRL 101

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
           FD+     +V +N M  GY+       A  LF  +   GL PD ++F S+L AC+     
Sbjct: 102 FDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACS--SPA 159

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
           AL  G+++H   ++ GL +N  V   LI++YA+C  V  ARR+F+ ++    VS+  +  
Sbjct: 160 ALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTG 219

Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
           AYA S    E+L  +  + +  ++P+ +T ++ LS+C  L +L+ GK IH  I +     
Sbjct: 220 AYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHS 279

Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
            V+V+TAL  M+ KCG + DA  VF+ +  +D  AW+ MI      GQ  ++  MF  M+
Sbjct: 280 DVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRML 339

Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
           K  V+PD +T+L +L AC+  G +  G    ++   K G+V  ++    ++++  +AG +
Sbjct: 340 KECVAPDRVTYLAILSACARPGGLACG-KEIHARAVKDGLVSDVRFGNALINMYSKAGSM 398

Query: 379 DEAYRFIDELPIKSTPILWRTLL 401
            +A +  D +P K   + W  L+
Sbjct: 399 KDARQVFDRMP-KRDVVSWTALV 420



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 186/385 (48%), Gaps = 42/385 (10%)

Query: 113 LLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172
           L   G   D Y +  LL++C  V A+ L  GKQ+H   ++ G+  N+Y+  TL+ LY  C
Sbjct: 35  LHQKGSQVDSYDYVKLLQSC--VKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHC 92

Query: 173 SDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232
             V  ARR+F+  S   VVS+N +I+ YA      EA +LF  +Q+  L+P   T +S L
Sbjct: 93  GSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSIL 152

Query: 233 SSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ 292
           S+C+   +L+ G+ +H  + + GL     V  ALI M+AKCG + DA  VFD M+ +D  
Sbjct: 153 SACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEV 212

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
           +W+ +  AYA  G   +S+  +  M++  V P  IT++ +L AC     +++G      +
Sbjct: 213 SWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQI 272

Query: 353 ----------------------------RDKYGIVPG--IKHYGCMVDLLGRAGRLDEA- 381
                                       R+ +  +P   +  +  M+  L  +G+L+EA 
Sbjct: 273 VESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAH 332

Query: 382 ---YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE---LDDSHGGDYVILS 435
              +R + E  +    + +  +LS+C+    L   K++  R  +   + D   G+ +I  
Sbjct: 333 GMFHRMLKEC-VAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALI-- 389

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVL 460
           N+ ++AG  +D   +   M  R V+
Sbjct: 390 NMYSKAGSMKDARQVFDRMPKRDVV 414


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/562 (36%), Positives = 310/562 (55%), Gaps = 44/562 (7%)

Query: 34  FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM 93
           F G+ ++H V  K     D  V T    F     +   + +A  +FD +   D+V +NTM
Sbjct: 128 FEGM-ELHGVAFKIATLCDPFVET---GFMDMYASCGRINYARNVFDEMSHRDVVTWNTM 183

Query: 94  ARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL 153
              Y R      A  LF E+ +S ++PD+    +++ AC   G   +   + ++ F I+ 
Sbjct: 184 IERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGN--MRYNRAIYEFLIEN 241

Query: 154 GLN-------------------------------SNLYVCTTLINLYAECSDVEAARRIF 182
            +                                 NL+V T +++ Y++C  ++ A+ IF
Sbjct: 242 DVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIF 301

Query: 183 ENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242
           +   +  +V +  +I+AY  S  P EAL +F E+    +KP  V+M S +S+CA LG LD
Sbjct: 302 DQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILD 361

Query: 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYA 302
             KW+H  I   GL+  + +N ALI+M+AKCG LD    VF+ M  ++  +WS+MI A +
Sbjct: 362 KAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALS 421

Query: 303 THGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI 362
            HG+   ++ +F  M +  V P+E+TF+G+LY CSH+GLV+EG   F SM D+Y I P +
Sbjct: 422 MHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKL 481

Query: 363 KHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
           +HYGCMVDL GRA  L EA   I+ +P+ S  ++W +L+S+C  H  L L K   +RI E
Sbjct: 482 EHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILE 541

Query: 423 LDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDG 482
           L+  H G  V++SN+ AR  RWEDV  +R++M+++ V K  G S I+ N    EF  GD 
Sbjct: 542 LEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDK 601

Query: 483 VHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLN 542
            H  S ++   LDE+V +LK+ GYVPD   V   D+E+EEK+  + +HSEKLA+ FGL+N
Sbjct: 602 RHKQSNEIYAKLDEVVSKLKLAGYVPDCGSV-LVDVEEEEKKDLVLWHSEKLALCFGLMN 660

Query: 543 TPPGT------TIRVVKNLRVC 558
                       IR+VKNLRVC
Sbjct: 661 EEKEEEKDSCGVIRIVKNLRVC 682



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/440 (25%), Positives = 213/440 (48%), Gaps = 39/440 (8%)

Query: 13  PPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSM 72
           PPP   T     L  L  C S   +KQ+HA  ++T + + LN     +   + + ++ ++
Sbjct: 4   PPPIASTAANTILEKLSFCKSLNHIKQLHAHILRTVINHKLN---SFLFNLSVSSSSINL 60

Query: 73  EHAHLLFDRIPEP-DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
            +A  +F  IP P + ++FN   R  SRS  P   I  +  + + G   D +SF  +LKA
Sbjct: 61  SYALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKA 120

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
            + V A  L EG +LH  A K+    + +V T  +++YA C  +  AR +F+ +S   VV
Sbjct: 121 VSKVSA--LFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVV 178

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           ++N +I  Y R    +EA  LF E+++ N+ P ++ + + +S+C   G++   + I+E++
Sbjct: 179 TWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFL 238

Query: 252 KKYGLDKYVKVNTALIDMHA-------------------------------KCGRLDDAV 280
            +  +     + TAL+ M+A                               KCGRLDDA 
Sbjct: 239 IENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQ 298

Query: 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG 340
            +FD    KD   W+ MI AY       +++ +FEEM  + + PD ++   ++ AC++ G
Sbjct: 299 VIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLG 358

Query: 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400
           ++D+   + +S     G+   +     ++++  + G LD      +++P ++  + W ++
Sbjct: 359 ILDKA-KWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNV-VSWSSM 416

Query: 401 LSSCSSHNNLGLAKQVIERI 420
           +++ S H     A  +  R+
Sbjct: 417 INALSMHGEASDALSLFARM 436


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/560 (38%), Positives = 324/560 (57%), Gaps = 12/560 (2%)

Query: 2   ATTPSP-PITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLI 60
           A  PS  P+ Q+   +      N L    R  S R   Q+HA  +K  LQ    V   LI
Sbjct: 8   AIKPSQNPLNQNSFEQNYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLI 67

Query: 61  NFC--TQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118
           N    TQ P  S       +FD  P+     ++++   +++++ P+ A+  F  +LN G+
Sbjct: 68  NLYSKTQLPLFSLQ-----VFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGV 122

Query: 119 LPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAA 178
            PDD+ +PS  KAC  +     + GK +HC A+K G   +++V ++L+++YA+C ++  A
Sbjct: 123 RPDDHIYPSATKACGFL--RRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDA 180

Query: 179 RRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL 238
           R +F+ + E  VVS++ +I  YA+     EAL+LF++    ++   D T  S +  C+  
Sbjct: 181 RHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSS 240

Query: 239 GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMI 298
             L+LGK IH    K   D    V +ALI +++KCG ++ A  VFD +  ++   W++M+
Sbjct: 241 TFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSML 300

Query: 299 VAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGI 358
           +A A H    +   +FEEM    + P+ I+FL +LYACSH GLV++G  YF  MRD YGI
Sbjct: 301 IACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKGREYFSLMRD-YGI 359

Query: 359 VPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
            P  +HY  +VDLLGRAG+L EA   I ++P++ T  +W  LL+ C  H +  +A  V +
Sbjct: 360 EPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVAD 419

Query: 419 RIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFF 478
           RI E+D S  G +V+LSN  A AGR+E+   +RK+++DRGV K  G S +E  N V  F 
Sbjct: 420 RILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFT 479

Query: 479 SGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITF 538
           +GD  H+   ++ + L+EL +E++  GYV DTS V    ++ EEK   +RYHSE+LAI F
Sbjct: 480 AGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRA-VDGEEKNETIRYHSERLAIAF 538

Query: 539 GLLNTPPGTTIRVVKNLRVC 558
           GL+  PPG  IRV+KNLRVC
Sbjct: 539 GLITFPPGRPIRVMKNLRVC 558


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/523 (37%), Positives = 303/523 (57%), Gaps = 8/523 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           KQ+HA+ +K    +D+ V     +  ++   T   E A  +FD +PE +I  +N      
Sbjct: 128 KQVHALAVKAGQISDVFVGCSAFDMYSKAGLT---EEARKMFDEMPERNIATWNAYLSNS 184

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
                   A+  F+E  + G  P+  +F + L ACA  GA  L  G+QLH F ++ G  +
Sbjct: 185 VLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACA--GASYLRLGRQLHGFVLQSGFEA 242

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           ++ V   LI+ Y +C  V  +  IF  IS+P  VS+ ++I +Y ++    +A  +F   +
Sbjct: 243 DVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRAR 302

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           +  ++PTD  + S LS+CA L  L++GK +H    K  +   + V +AL+DM+ KCG ++
Sbjct: 303 KEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIE 362

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM--KAQVSPDEITFLGLLYA 335
           DA   FD M  ++   W+AMI  YA  GQ   ++ +F+EM     +V+P+ +TF+ +L A
Sbjct: 363 DAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSA 422

Query: 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
           CS  G V+ G   F SMR +YGI PG +HY C+VDLLGRAG +++AY+FI ++PI+ T  
Sbjct: 423 CSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVS 482

Query: 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455
           +W  LL +        L K   + +FELD    G++V+LSN+ A AGRWE+   +RK MK
Sbjct: 483 VWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMK 542

Query: 456 DRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHH 515
           D G+ K  GCS I   N V  F + D  H  ++++Q  L +L  E++  GY+PDTS    
Sbjct: 543 DVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALF 602

Query: 516 GDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            D+E+EEK + + YHSEK+A+ FGL++ P G  IR+ KNLR+C
Sbjct: 603 -DLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLRIC 644



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/433 (24%), Positives = 211/433 (48%), Gaps = 21/433 (4%)

Query: 21  TPNALSLL------PRCTSFRGLKQIHAVTIKTHLQNDLN--VLTKLINFCTQNPTTSSM 72
           +PN+L+ L       +C+  R  +  HA  IKT L N L   +   L+N  ++    +S 
Sbjct: 5   SPNSLASLVESAVSTQCS--RLGRAAHAQIIKT-LDNPLPSFIYNHLVNMYSKLDRPNS- 60

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
             A LL    P   +V +  +  G  ++     A+F F  +    + P+D++FP   KA 
Sbjct: 61  --AQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKAS 118

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
             + +  +  GKQ+H  A+K G  S+++V  +  ++Y++    E AR++F+ + E  + +
Sbjct: 119 GSLRSPLV--GKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIAT 176

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +NA ++      R ++AL+ F E +    +P  +T  + L++CA    L LG+ +H ++ 
Sbjct: 177 WNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVL 236

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           + G +  V V   LID + KC ++  +  +F  +S  +  +W +MIV+Y  + +  K+ L
Sbjct: 237 QSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACL 296

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           +F    K  + P +     +L AC+   +++ G    +++  K  +V  I     +VD+ 
Sbjct: 297 VFLRARKEGIEPTDFMVSSVLSACAGLSVLEVG-KSVHTLAVKACVVGNIFVGSALVDMY 355

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432
           G+ G +++A R  DE+P ++  + W  ++   +      +A  + + +         +YV
Sbjct: 356 GKCGSIEDAERAFDEMPERNL-VTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYV 414

Query: 433 ILS---NLCARAG 442
                 + C+RAG
Sbjct: 415 TFVCVLSACSRAG 427


>gi|147833682|emb|CAN62088.1| hypothetical protein VITISV_030648 [Vitis vinifera]
          Length = 583

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/574 (37%), Positives = 338/574 (58%), Gaps = 48/574 (8%)

Query: 2   ATTPSPPITQSPPPKLCTNTPNA------LSLLPRCTSFRGLKQIHAVTIKT---HLQND 52
           A   +PP   S  P   +N+ +       L  L  CT    LKQ+HA TI+T   H  N 
Sbjct: 4   AAVTAPP---SHLPHAISNSDSXTHHRRLLLFLNSCTCMSQLKQLHAQTIRTTSSHHPNT 60

Query: 53  LNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIR-AIFLFV 111
             + +++++F     +   + +A  +F +I  P+  ++N + R  +RS    + AI L+ 
Sbjct: 61  FFLYSRILHF----SSLHDLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYH 116

Query: 112 ELLNSG-LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA 170
            +L  G ++ D ++FP +LKACA + A  L EG+Q+H   +KLG +SB+Y+  +L++ YA
Sbjct: 117 RMLEQGSVMQDKHTFPFVLKACAYLFA--LSEGEQIHAQILKLGFDSBVYINNSLVHFYA 174

Query: 171 ECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLS 230
            C  ++ A+ +F+ +SE  +VS+N +I A+ R    + AL+LF E+Q +  +P   T+ S
Sbjct: 175 TCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQ-KFFEPDGYTIQS 233

Query: 231 ALSSCALLGSLDLGKWIHEYI-KKYGLDKY--VKVNTALIDMHAKCGRLDDAVSVFDNMS 287
             ++CA +GSL LG W H ++ KK   D+   V +NT+L+DM+ KCG L+ A+ +F  M 
Sbjct: 234 IANACAGMGSLSLGMWAHVFLLKKXDADRVNDVLLNTSLVDMYCKCGSLELALQLFHRMP 293

Query: 288 GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDEITFLGLLYACSHTGLVDEGW 346
            +D  +W++MI+ ++THG+   ++  F  M++ + + P+ ITF+G+L AC+H GLV EG 
Sbjct: 294 KRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGR 353

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
            YF  M  +Y I P ++HYGC+VDLL RAG +DEA   +  +P++   ++WR+LL +C  
Sbjct: 354 RYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCK 413

Query: 407 HN-NLGLAKQVIERIFELDDSH-GGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPG 464
            N  + L++++  R+ E +     G YV+LS + A A RW DV  +RKLM D+GV+K PG
Sbjct: 414 QNAGVELSEEMASRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPG 473

Query: 465 CSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKE 524
           CSSIE+                      ALD + + ++ VGY PD+S     D   + K+
Sbjct: 474 CSSIEI---------------------XALDVIEERVERVGYSPDSSQAPMVDETIDGKQ 512

Query: 525 IALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +LR HSE+LAI FGLL T PG  IR+ KNLRVC
Sbjct: 513 YSLRLHSERLAIAFGLLKTKPGMPIRIFKNLRVC 546


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/549 (35%), Positives = 309/549 (56%), Gaps = 14/549 (2%)

Query: 12  SPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSS 71
           +P P++  +   A +   +  +  G + IH+   ++ L  D  +L  LI+   +    S 
Sbjct: 59  APTPRVYHSIITACA---QSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSD 115

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
             H   +FD IP  D+V +  +  GY+++  P  A+ L  ++L +   P  ++F S LKA
Sbjct: 116 ARH---VFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKA 172

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
               G   +  G+Q+H  A+K  L+ ++YV + L+++YA C  ++ A R+F+ +     V
Sbjct: 173 AGACGGRGI--GEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEV 230

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+NA+I  +AR       L  F E+Q      T  T  S  S+ A +G+L+ G+W+H ++
Sbjct: 231 SWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHM 290

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            K G      V   ++ M+AK G + DA  VFD +  +D   W+ M+ A+A +G G +++
Sbjct: 291 IKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAV 350

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
             FEE+ K  +  ++ITFL +L ACSH GLV EG  YF  M+D Y + P I HY   VDL
Sbjct: 351 AHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFDMMKD-YNVEPEIDHYVSFVDL 409

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
           LGRAG L EA  F+ ++P++ T  +W  LL +C  H N  + +   + +FELD    G  
Sbjct: 410 LGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPEDTGPP 469

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           V+L N+ A  G+W+D   +RK+MK  GV K P CS +E+ N V  F + D  H  S ++ 
Sbjct: 470 VLLYNIYASTGQWDDAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHPKSEEIY 529

Query: 492 KALDELVKELKMVGYVPDTS--LVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTI 549
           +  +E+   +K  GYVP+T   L+H   ++++E+E  L+YHSEK+A+ F L+N P G TI
Sbjct: 530 RMWEEVNTRIKKAGYVPNTDYVLLH---IKEQERETKLQYHSEKIALAFALINMPAGATI 586

Query: 550 RVVKNLRVC 558
           R++KN+R+C
Sbjct: 587 RIMKNIRIC 595



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 90/186 (48%), Gaps = 8/186 (4%)

Query: 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV 280
           L PT     S +++CA   +L   + IH ++ +  L     +  +LI M+ KCG + DA 
Sbjct: 58  LAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDAR 117

Query: 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY---ACS 337
            VFD +  +D  +W+ +I  YA +    +++ +  +M++A+  P   TF   L    AC 
Sbjct: 118 HVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACG 177

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
             G+ ++     +++  KY +   +     ++D+  R  ++D A R  D L  K+  + W
Sbjct: 178 GRGIGEQ----MHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKN-EVSW 232

Query: 398 RTLLSS 403
             L++ 
Sbjct: 233 NALIAG 238


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/488 (39%), Positives = 294/488 (60%), Gaps = 3/488 (0%)

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130
           ++E A  LFD +P+ ++  +N M  G ++ +    A+ LF  +     +PD+YS  S+L+
Sbjct: 150 NLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNELSFMPDEYSLGSVLR 209

Query: 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV 190
            CA +GA  L  G+Q+H + +K G   NL V  +L ++Y +   +    R+   + +  +
Sbjct: 210 GCAHLGA--LLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSL 267

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY 250
           V++N +++  A+       L  +  ++    +P  +T +S +SSC+ L  L  GK IH  
Sbjct: 268 VAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCSELAILCQGKQIHAE 327

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310
             K G    V V ++L+ M+++CG L D++  F     +D   WS+MI AY  HGQG ++
Sbjct: 328 AVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEA 387

Query: 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370
           I +F EM +  +  +EITFL LLYACSH GL D+G   F  M  KYG+   ++HY C+VD
Sbjct: 388 IKLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVD 447

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430
           LLGR+G L+EA   I  +P+K+  I+W+TLLS+C  H N  +A++V + +  +D      
Sbjct: 448 LLGRSGCLEEAEAMIRSMPVKADAIIWKTLLSACKIHKNAEIARRVADEVLRIDPQDSAS 507

Query: 431 YVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDL 490
           YV+L+N+ + A RW++V  +R+ MKD+ V K PG S +EV N V +F  GD  H    ++
Sbjct: 508 YVLLANIYSSANRWQNVSEVRRAMKDKMVKKEPGISWVEVKNQVHQFHMGDECHPKHVEI 567

Query: 491 QKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIR 550
            + L+EL  E+K  GYVPDTS V H DM++EEKE  LR+HSEKLAI F L+NTP G  IR
Sbjct: 568 NQYLEELTSEIKRQGYVPDTSSVLH-DMDNEEKEQILRHHSEKLAIAFALMNTPEGVPIR 626

Query: 551 VVKNLRVC 558
           V+KNLRVC
Sbjct: 627 VMKNLRVC 634



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 85/205 (41%), Gaps = 39/205 (19%)

Query: 232 LSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVS---------- 281
           L +C  L S+ LGK +H  I   G      ++  L+++++K G L  AV+          
Sbjct: 76  LQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQAAVALFDRMPRRNI 135

Query: 282 ---------------------VFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
                                +FD M  ++   W+AM+          +++L+F  M + 
Sbjct: 136 MSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNEL 195

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKY--GIVPGIKHYGCMVDLLGRAGR 377
              PDE +   +L  C+H G +  G   + Y M+  +   +V G      +  +  +AG 
Sbjct: 196 SFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCS----LAHMYMKAGS 251

Query: 378 LDEAYRFIDELPIKSTPILWRTLLS 402
           + +  R I+ +P   + + W TL+S
Sbjct: 252 MHDGERVINWMP-DCSLVAWNTLMS 275


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 213/591 (36%), Positives = 333/591 (56%), Gaps = 64/591 (10%)

Query: 25  LSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           +++LP C S + L   K+IH+  I+     D  V   LI+   +     SM+ A  +F+ 
Sbjct: 263 VNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAK---CGSMKDAVNVFNV 319

Query: 82  IPEPDIVLFNTMARGYSRS----------------KTPI-------------------RA 106
           +   D+V +N M  GY++S                  P+                    A
Sbjct: 320 MEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEA 379

Query: 107 IFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS--------- 157
           +  F +++  G  P+  +  SLL ACA +GA  L +G + H +++K  L S         
Sbjct: 380 LDTFQQMILYGSEPNSVTIISLLSACASLGA--LSQGMETHAYSLKKCLLSLDNDFGGDG 437

Query: 158 ---NLYVCTTLINLYAECSDVEAARRIFENI--SEPCVVSYNAIITAYARSSRPNEALSL 212
              +L V   LI++Y++C   +AAR IF +I   E  VV++  +I  YA+    N+AL L
Sbjct: 438 DGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKL 497

Query: 213 FRELQER--NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK---YGLDKYVKVNTALI 267
           F E+  +   + P   T+   L +CA L SL +GK IH Y+ +   Y    Y   N  LI
Sbjct: 498 FSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVAN-CLI 556

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
           DM++KCG +D A +VFD+M  ++  +W++M+  Y  HG+G +++ +F++M KA   PD+I
Sbjct: 557 DMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDI 616

Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
           +FL LLYACSH+G+VD+G +YF  MR  YG++   +HY C++DLL R+GRLD+A++ I E
Sbjct: 617 SFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQE 676

Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447
           +P++ +  +W  LLS+C  H+N+ LA+  + ++  +   + G Y ++SN+ A A RW+DV
Sbjct: 677 MPMEPSAAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDV 736

Query: 448 DYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYV 507
             +R+LMK  G+ K PGCS ++       FF GD  H  S ++   L+ L+  +K++GYV
Sbjct: 737 ARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYV 796

Query: 508 PDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           P+T+   H D++DEEK   L  HSEKLA+ +GLL T PG  IR+ KNLRVC
Sbjct: 797 PETNFALH-DVDDEEKNNLLTEHSEKLALAYGLLTTSPGCPIRITKNLRVC 846



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 139/280 (49%), Gaps = 12/280 (4%)

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +P P  V +N + R +       RAI +   +L +G  PD ++ P  LKAC  +   +  
Sbjct: 110 VPSP-AVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTLPYALKACGEL--PSYR 166

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC---VVSYNAIIT 198
            G   H      G  SN++VC  L+ +Y+    +E A  +F+ I+      V+S+N+I+ 
Sbjct: 167 SGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVA 226

Query: 199 AYARSSRPNEALSLFREL------QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           A+ + S P  AL LF E+      +  N +   +++++ L +CA L +L   K IH Y  
Sbjct: 227 AHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAI 286

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           + G      V  ALID +AKCG + DAV+VF+ M  KD  +W+AM+  Y   G+   +  
Sbjct: 287 RNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFE 346

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
           +F+ M K  +  D IT+  ++   +  G   E  + F  M
Sbjct: 347 LFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQM 386



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 131/326 (40%), Gaps = 38/326 (11%)

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGL---------------NSNLYVC-----TT 164
           F SLLK C      ++   +Q+H   I  GL                S+ YV      T 
Sbjct: 34  FASLLKEC-----RSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKSLGTG 88

Query: 165 LINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT 224
           ++  Y  C     A  + E +     V +N ++ A+    R + A+ +   +     KP 
Sbjct: 89  VVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPD 148

Query: 225 DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFD 284
             T+  AL +C  L S   G   H  I   G +  V V  AL+ M+++ G L+DA  VFD
Sbjct: 149 HFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFD 208

Query: 285 NMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMM------KAQVSPDEITFLGLLYA 335
            ++ K   D  +W++++ A+        ++ +F EM             D I+ + +L A
Sbjct: 209 EITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPA 268

Query: 336 C-SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           C S   L      + Y++R+  G          ++D   + G + +A    + +  K   
Sbjct: 269 CASLKALPQTKEIHSYAIRN--GTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDV- 325

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERI 420
           + W  +++  +     G A ++ + +
Sbjct: 326 VSWNAMVTGYTQSGKFGAAFELFKNM 351



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 118/286 (41%), Gaps = 64/286 (22%)

Query: 12  SPPPKLCTNTPNALSLLPRC---TSFRGLKQIHAVTIKTHLQND-----LNVLTKLINFC 63
           S P  +  N      +L  C   +S R  KQIHA   + H          N L  + + C
Sbjct: 503 SKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKC 562

Query: 64  TQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDY 123
                   ++ A  +FD +P+ + V + +M  GY        A+ +F ++  +G +PDD 
Sbjct: 563 ------GDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDI 616

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           SF  LL AC+  G   +++G  L  F I                + ++   + +A+    
Sbjct: 617 SFLVLLYACSHSG--MVDQG--LDYFDI----------------MRSDYGVIASAQH--- 653

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
                    Y  +I   ARS R ++A   ++ +QE  ++P+    ++ LS+C +  +++L
Sbjct: 654 ---------YACVIDLLARSGRLDKA---WKTIQEMPMEPSAAIWVALLSACRVHSNVEL 701

Query: 244 GKWIHEYIKKYGLDKYVKVN-------TALIDMHAKCGRLDDAVSV 282
                    +Y L+K V +        T + +++A   R  D   +
Sbjct: 702 A--------EYALNKLVSMKAENDGSYTLISNIYATARRWKDVARI 739


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/574 (35%), Positives = 324/574 (56%), Gaps = 49/574 (8%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQ-----NPTTSSMEHAHLLF 79
           ++ L  C +   +KQ+HA  +   L     VL KLI   T+     +P   S      +F
Sbjct: 50  VTTLDGCKNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLS------IF 103

Query: 80  DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEA 139
           +++  P+  L+N + RGY   +    +   +  +   G++P  ++F +L KAC       
Sbjct: 104 NQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVG 163

Query: 140 LEEGKQLHCFAIKLG-LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
           L  G+Q+H   I +G    +L+V  ++I++Y +C  +E  R++F+ +    V+S+  +I+
Sbjct: 164 L--GRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELIS 221

Query: 199 AYARS-------------------------------SRPNEALSLFRELQERNLKPTDVT 227
           AY +S                               ++P EA+  F ++QE  ++  ++T
Sbjct: 222 AYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEIT 281

Query: 228 MLSALSSCALLGSLDLGKWIHEYIKK--YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285
           ++  +S+CA LG+     WI +  +K  +G    V V +ALIDM++KCG + DA  VF  
Sbjct: 282 LIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQG 341

Query: 286 MSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
           M  ++  ++S+MI+ +A HG+ H ++ +F+EM+K ++ P+ +TF+G+L ACSH G+V++G
Sbjct: 342 MKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQG 401

Query: 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS 405
           W  F  M   YGI P   HY CMVDLLGRAGRL EA+  +  +PI+    +W  LL +C 
Sbjct: 402 WQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACR 461

Query: 406 SHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGC 465
            H +  +A      +FEL+    G+Y++L+N+ A  GRW DV  +RKLM+ RG+ K P  
Sbjct: 462 IHKSPDIAAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAF 521

Query: 466 SSIEV-NNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKE 524
           S IE    +V EFFSGD  H  S ++++AL++L+  L+  GY P  S V + D+ DE+K 
Sbjct: 522 SWIESEKGMVHEFFSGDMTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVSY-DVNDEDKR 580

Query: 525 IALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             L  HSEKLA+ FGL++T PG+ IR+VKNLR+C
Sbjct: 581 RILMTHSEKLALAFGLISTIPGSKIRIVKNLRIC 614


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/542 (36%), Positives = 313/542 (57%), Gaps = 12/542 (2%)

Query: 22  PNALS---LLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PN  +   +L  CT  R +   +QIH++++KT  ++D+ V   LI+  ++      +E A
Sbjct: 343 PNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSK---YGWLEKA 399

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
             + + + E D+V + +M  GY + +    A+  F E+   G+ PD+    S +  CA  
Sbjct: 400 RRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCA-- 457

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
           G  A+ +G Q+H      G + ++ +   L+NLYA C  +  A   FE I     +++N 
Sbjct: 458 GINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNG 517

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +++ +A+S    EAL +F  + +  +K    T +SALS+ A L  +  GK IH  + K G
Sbjct: 518 LVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTG 577

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
                +V  ALI ++ KCG  +DA   F  MS ++  +W+ +I + + HG+G +++ +F+
Sbjct: 578 HSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFD 637

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
           +M K  + P+++TF+G+L ACSH GLV+EG +YF SM D+YGI P   HY C++D+ GRA
Sbjct: 638 QMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRA 697

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
           G+LD A +FI+E+PI +  ++WRTLLS+C  H N+ + +   + + EL+      YV+LS
Sbjct: 698 GQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLS 757

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           N  A   +W + D +RK+M+DRGV K PG S IEV NVV  FF GD +H  +  +   L 
Sbjct: 758 NAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLA 817

Query: 496 ELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNL 555
            +   +  VGY  +   + H D E E ++     HSEKLA+TFGL++ PP   +RV+KNL
Sbjct: 818 VINDRVAKVGYKQEKYHLFH-DKEQEGRDPTDLVHSEKLAVTFGLMSLPPCMPLRVIKNL 876

Query: 556 RV 557
           RV
Sbjct: 877 RV 878



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 200/410 (48%), Gaps = 14/410 (3%)

Query: 21  TPNALS-LLPRCTS---FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           TP  LS +L  CT    F   + IHA   K    +++ V   +I    +     S   A 
Sbjct: 142 TPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLR---CGSFRLAE 198

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +F  +P  D V FNT+  G+++      A+ +F E+  SGL PD  +  SLL ACA +G
Sbjct: 199 RVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLG 258

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
              L++G QLH +  K G++S+  +  +L++LY +C DVE A  IF +     VV +N +
Sbjct: 259 D--LQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLM 316

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           + A+ + +   ++  LF ++Q   ++P   T    L +C     +DLG+ IH    K G 
Sbjct: 317 LVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGF 376

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
           +  + V+  LIDM++K G L+ A  V + +  KD  +W++MI  Y  H     ++  F+E
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKE 436

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M K  + PD I     +  C+    + +G    ++     G    +  +  +V+L  R G
Sbjct: 437 MQKCGIWPDNIGLASAISGCAGINAMRQGLQ-IHARIYVSGYSGDVSIWNALVNLYARCG 495

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
           R+ EA+   +E+  K   I W  L+S  +     GL ++ ++    +D S
Sbjct: 496 RIREAFSSFEEIEHKD-EITWNGLVSGFAQS---GLHEEALKVFMRMDQS 541



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 183/369 (49%), Gaps = 7/369 (1%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           +IHA  +   L     V   LI+  ++N        A  +F+ +   D V +  M  GY+
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLP---ARRVFEELSARDNVSWVAMLSGYA 119

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
           ++     A+ L+ ++  +G++P  Y   S+L +C    AE   +G+ +H    K G  S 
Sbjct: 120 QNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSC--TKAELFAQGRLIHAQGYKHGFCSE 177

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
           ++V   +I LY  C     A R+F ++     V++N +I+ +A+      AL +F E+Q 
Sbjct: 178 IFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQF 237

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
             L P  VT+ S L++CA LG L  G  +H Y+ K G+     +  +L+D++ KCG ++ 
Sbjct: 238 SGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVET 297

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A+ +F++    +   W+ M+VA+       KS  +F +M  A + P++ T+  +L  C+ 
Sbjct: 298 ALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTC 357

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
           T  +D G    +S+  K G    +   G ++D+  + G L++A R ++ L  K   + W 
Sbjct: 358 TREIDLG-EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDV-VSWT 415

Query: 399 TLLSSCSSH 407
           ++++    H
Sbjct: 416 SMIAGYVQH 424


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/526 (36%), Positives = 318/526 (60%), Gaps = 11/526 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           KQ+H + +K+ L +D++V   L+N  ++         A  +F+ +   D++ +N+M    
Sbjct: 306 KQVHGIAVKSGLDSDVSVANSLVNMYSK---MGCAYFAREVFNDMKHLDLISWNSMISSC 362

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL-----KACACVGAEALEEGKQLHCFAIK 152
           ++S     ++ LF++LL+ GL PD ++  S+      KAC C+    L++GKQ+H  AIK
Sbjct: 363 AQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCL--VLLDQGKQIHAHAIK 420

Query: 153 LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL 212
            G +S+L+V + ++++Y +C D+  A  +F  IS P  V++ ++I+    +   ++AL +
Sbjct: 421 AGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRI 480

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           +  +++  + P + T  + + + + + +L+ G+ +H  + K        V T+L+DM+AK
Sbjct: 481 YHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAK 540

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
           CG ++DA  +F  M+ ++   W+AM+V  A HG   +++ +F+ M    + PD ++F+G+
Sbjct: 541 CGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGI 600

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L ACSH GL  E + Y +SM + YGI P I+HY C+VD LGRAG + EA + I+ +P K+
Sbjct: 601 LSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKA 660

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452
           +  + R LL +C    ++   K+V  R+F L+      YV+LSN+ A A RW+DV   RK
Sbjct: 661 SASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARK 720

Query: 453 LMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSL 512
           +MK + V K PG S I+V N++  F   D  H  +  +   ++E++K ++  GYVPDT  
Sbjct: 721 MMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEF 780

Query: 513 VHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           V   D+EDEEKE +L YHSEKLAI +GL++TP  TTIRV+KNLRVC
Sbjct: 781 VLL-DVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVC 825



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 139/462 (30%), Positives = 241/462 (52%), Gaps = 30/462 (6%)

Query: 9   ITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPT 68
           +T +P  KLC N+                + +H   IK  L+ D+ V   L+N  ++   
Sbjct: 184 MTLAPVLKLCLNSG----------CLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSK--- 230

Query: 69  TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSL 128
              M  A LLFD + E D+VL+N M +GY +      A  LF E   SGL PD++S   +
Sbjct: 231 CGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLI 290

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP 188
           L  C   G + LE GKQ+H  A+K GL+S++ V  +L+N+Y++      AR +F ++   
Sbjct: 291 LNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHL 350

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKP-----TDVTMLSALSSCALLGSLDL 243
            ++S+N++I++ A+SS   E+++LF +L    LKP       +T+ +A  +C  L  LD 
Sbjct: 351 DLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQ 410

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303
           GK IH +  K G D  + VN+ ++DM+ KCG + +A  VF+ +S  D  AW++MI     
Sbjct: 411 GKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVD 470

Query: 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK 363
           +G   +++ ++  M +++V PDE TF  L+ A S    +++G    ++   K   V    
Sbjct: 471 NGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQG-RQLHANVIKLDCVSDPF 529

Query: 364 HYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
               +VD+  + G +++AYR   ++ +++   LW  +L   + H N   A++ +  +F+ 
Sbjct: 530 VGTSLVDMYAKCGNIEDAYRLFKKMNVRNIA-LWNAMLVGLAQHGN---AEEAVN-LFKS 584

Query: 424 DDSHGGD-----YVILSNLCARAG-RWEDVDYLRKLMKDRGV 459
             SHG +     ++ + + C+ AG   E  +YL  +  D G+
Sbjct: 585 MKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGI 626



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 173/374 (46%), Gaps = 20/374 (5%)

Query: 61  NFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRS-----KTPIRAIFLFVELLN 115
           N  T      S+  A  +FD  PE D+V +N +   Y+ S           + LF  L  
Sbjct: 117 NLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRA 176

Query: 116 SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDV 175
           S       +   +LK C   G     EG  +H +AIK+GL  +++V   L+N+Y++C  +
Sbjct: 177 SLGSTTRMTLAPVLKLCLNSGCLWAAEG--VHGYAIKIGLEWDVFVSGALVNIYSKCGRM 234

Query: 176 EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSC 235
             AR +F+ + E  VV +N ++  Y +     EA  LF E     L+P + ++   L+ C
Sbjct: 235 RDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGC 294

Query: 236 ALLGS--LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
              G+  L+LGK +H    K GLD  V V  +L++M++K G    A  VF++M   D  +
Sbjct: 295 LWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLIS 354

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY-----ACSHTGLVDEGWNY 348
           W++MI + A      +S+ +F +++   + PD  T   +       AC    L+D+G   
Sbjct: 355 WNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQG-KQ 413

Query: 349 FYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP--ILWRTLLSSCSS 406
            ++   K G    +     ++D+  + G +  A    + +   S P  + W +++S C  
Sbjct: 414 IHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYI---SAPDDVAWTSMISGCVD 470

Query: 407 HNNLGLAKQVIERI 420
           + N   A ++  R+
Sbjct: 471 NGNEDQALRIYHRM 484



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 132/269 (49%), Gaps = 7/269 (2%)

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           GK  H   +  G   + ++   L+ +Y++C  + +AR++F+   E  +V++NAI+ AYA 
Sbjct: 96  GKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAA 155

Query: 203 SSRPN-----EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
           S   N     E L LFR L+      T +T+   L  C   G L   + +H Y  K GL+
Sbjct: 156 SVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLE 215

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
             V V+ AL+++++KCGR+ DA  +FD M  +D   W+ M+  Y   G   ++  +F E 
Sbjct: 216 WDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEF 275

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVD-EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
            ++ + PDE +   +L  C   G  D E     + +  K G+   +     +V++  + G
Sbjct: 276 HRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMG 335

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCS 405
               A    +++      I W +++SSC+
Sbjct: 336 CAYFAREVFNDMK-HLDLISWNSMISSCA 363



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 14/194 (7%)

Query: 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIV 299
           +L LGK  H  I   G      ++  L+ M++KCG L  A  VFD    +D   W+A++ 
Sbjct: 92  NLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILG 151

Query: 300 AYATH-----GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV--DEGWNYFYSM 352
           AYA       G   + + +F  +  +  S   +T   +L  C ++G +   EG    +  
Sbjct: 152 AYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEG---VHGY 208

Query: 353 RDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGL 412
             K G+   +   G +V++  + GR+ +A    D +  +   +LW  +L     +  LGL
Sbjct: 209 AIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDV-VLWNMML---KGYVQLGL 264

Query: 413 AKQVIERIFELDDS 426
            K+  +   E   S
Sbjct: 265 EKEAFQLFSEFHRS 278


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/546 (37%), Positives = 316/546 (57%), Gaps = 19/546 (3%)

Query: 22  PNAL---SLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           P+A+   S L  CT    + Q   I A T+ +   +D  V   LIN  ++     S+E A
Sbjct: 161 PDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSK---CGSLESA 217

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
             +FDR+   D++ +NTM  GY++     +A+ LF  +  +   P+  +F  LL AC  +
Sbjct: 218 RKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNL 277

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD-VEAARRIFENISEPCVVSYN 194
             E LE+G+ +H    + G  S+L +   L+N+Y +CS  +E AR++FE +    V+++N
Sbjct: 278 --EDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWN 335

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
            +I AY +  +  +AL +F+++Q  N+ P ++T+ + LS+CA+LG+   GK +H  I   
Sbjct: 336 ILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASG 395

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
                V +  +L++M+ +CG LDD V VF  +  K   +WS +I AYA HG     +  F
Sbjct: 396 RCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHF 455

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
            E+++  ++ D++T +  L ACSH G++ EG   F SM   +G+ P  +H+ CMVDLL R
Sbjct: 456 WELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSR 515

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL--DDSHGGDYV 432
           AGRL+ A   I ++P     + W +LLS C  HN+   A +V +++FEL  +D H     
Sbjct: 516 AGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEH-STVT 574

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
           +LSN+ A AGRW+DV   RK    R   K PGCS IE+N+ V EF +GD  H     +  
Sbjct: 575 LLSNVYAEAGRWDDV---RKTRNRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAA 631

Query: 493 ALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVV 552
            +  L K++K  GYVPD  +V H ++++EEKE  L YHSEKLAI +GL++TPPGT + +V
Sbjct: 632 EIKRLSKQMKDAGYVPDMRMVLH-NVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIV 690

Query: 553 KNLRVC 558
           KNLR C
Sbjct: 691 KNLRAC 696



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 125/445 (28%), Positives = 230/445 (51%), Gaps = 29/445 (6%)

Query: 31  CTSFRGLKQ---IHAVTIKTHL-QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPD 86
           C+S + LKQ   +HA+ ++T L + D+ + T LI   T       +E A   FD + +  
Sbjct: 68  CSSSKDLKQGQLLHAMILETRLLEFDIILGTALI---TMYARCRDLELARKTFDEMGKKT 124

Query: 87  IVLFNTMARGYSRSKTPIRAIFLFVELLNS---GLLPDDYSFPSLLKACACVGAEALEEG 143
           +V +N +  GYSR+     A+ ++ ++++    G+ PD  +F S L AC  VG   + +G
Sbjct: 125 LVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGD--ISQG 182

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
           +++    +  G  S+  V   LIN+Y++C  +E+AR++F+ +    V+++N +I+ YA+ 
Sbjct: 183 REIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQ 242

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
               +AL LF+ +   + KP  VT +  L++C  L  L+ G+ IH  +++ G +  + + 
Sbjct: 243 GAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIG 302

Query: 264 TALIDMHAKC-GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
             L++M+ KC   L++A  VF+ M  +D   W+ +IVAY  +GQ   ++ +F++M    V
Sbjct: 303 NVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENV 362

Query: 323 SPDEITFLGLLYACSHTGLVDEG---WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
           +P+EIT   +L AC+  G   +G        S R K  +V        ++++  R G LD
Sbjct: 363 APNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVL----ENSLMNMYNRCGSLD 418

Query: 380 EAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL--DDSHGGDYVILSNL 437
           +       +  KS  + W TL+++ + H   G ++  +E  +EL  +     D  ++S L
Sbjct: 419 DTVGVFAAIRDKSL-VSWSTLIAAYAQH---GHSRTGLEHFWELLQEGLAADDVTMVSTL 474

Query: 438 --CARAGRW-EDVDYLRKLMKDRGV 459
             C+  G   E V     ++ D G+
Sbjct: 475 SACSHGGMLKEGVQTFLSMVGDHGL 499



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 121/255 (47%), Gaps = 9/255 (3%)

Query: 168 LYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT 227
           +Y +C  V  A  +F  I  P  VS+  I+ A+AR+    EAL  +R +    L+P    
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 228 MLSALSSCALLGSLDLGKWIHEYIKKYGLDKY-VKVNTALIDMHAKCGRLDDAVSVFDNM 286
            + A+  C+    L  G+ +H  I +  L ++ + + TALI M+A+C  L+ A   FD M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ---VSPDEITFLGLLYACSHTGLVD 343
             K    W+A+I  Y+ +G    ++ ++++M+      + PD ITF   LYAC+  G + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 344 EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
           +G     +     G          ++++  + G L+ A +  D L  +   I W T++S 
Sbjct: 181 QG-REIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDV-IAWNTMISG 238

Query: 404 CSSHNNLGLAKQVIE 418
            +     G A Q +E
Sbjct: 239 YAKQ---GAATQALE 250


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/490 (39%), Positives = 304/490 (62%), Gaps = 10/490 (2%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL--NSGLLPDDYSFPSLLKAC 132
           A   FD IP+P+ V+   MA GY R+     ++ LF  ++  +S  + D+ +      A 
Sbjct: 3   ARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSAS 62

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE--CSDVEAARRIFENISEPCV 190
           A V    +     LH    K+G   N  V  T+++ YA+    D+E AR++F+ + E  V
Sbjct: 63  ARVPDRGVT--ASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDV 119

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQE--RNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
           VS+N++I  YA++    EA+ L+ ++      +K   V + + L +CA  G++  GK IH
Sbjct: 120 VSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIH 179

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
             + + GL++ V V T+++DM++KCGR++ A   F  +  K+  +WSAMI  Y  HG+G 
Sbjct: 180 NQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQ 239

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
           +++ +F EM ++ + P+ ITF+ +L ACSH GL+DEG  ++ +M+ ++GI  G++HYGCM
Sbjct: 240 EALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCM 299

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428
           VDLLGRAG LDEAY  I E+ +K    +W  LLS+C  H N+ LA+  ++R+FELD S+ 
Sbjct: 300 VDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNS 359

Query: 429 GDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYST 488
           G YV+LSN+ A AG W+DV+ +R L+K R + K PG SS E+   +  F+ GD  H    
Sbjct: 360 GYYVLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHI 419

Query: 489 DLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTT 548
           ++   L++L++ ++  GYVP+T  V H D+++EEKE ALR HSEKLA+ F L+N+ P + 
Sbjct: 420 EIYSYLEKLLERMQEAGYVPNTGSVLH-DLDEEEKESALRIHSEKLAVAFALMNSVPRSV 478

Query: 549 IRVVKNLRVC 558
           I ++KNLRVC
Sbjct: 479 IHIIKNLRVC 488



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 13/167 (7%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K IH   ++  L+ ++ V T +++  ++      +E A   F +I E +I+ ++ M  GY
Sbjct: 176 KHIHNQVVRMGLEENVYVGTSIVDMYSK---CGRVEMASRAFRKIKEKNILSWSAMITGY 232

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHC-----FAIK 152
                   A+ +F E+  SGL P+  +F S+L AC+  G   L+EG+  +      F I+
Sbjct: 233 GMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAG--LLDEGRYWYNAMKQEFGIE 290

Query: 153 LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
            G+    Y C   +   A C D EA   I E   +P    + A+++A
Sbjct: 291 AGVEH--YGCMVDLLGRAGCLD-EAYSLIKEMKVKPDAAIWGALLSA 334


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/526 (36%), Positives = 308/526 (58%), Gaps = 7/526 (1%)

Query: 34  FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM 93
            R L+Q HA  + T       +LTKL+   T +    S+ +   LF  + +PD  LFN++
Sbjct: 23  LRRLQQAHAHLVVTGCHRSRALLTKLL---TLSCAAGSIAYTRRLFRSVSDPDSFLFNSL 79

Query: 94  ARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL 153
            +  S+    + A+  +  +L S ++P  Y+F S++KACA +    +  G  +H      
Sbjct: 80  IKASSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSLLCI--GTLVHSHVFVS 137

Query: 154 GLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLF 213
           G  S+ +V   LI  YA+      AR++F+ + +  +V++N++I+ Y ++   NEA+ +F
Sbjct: 138 GYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGLANEAVEVF 197

Query: 214 RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273
            +++E  ++P   T +S LS+C+ LGSLD G W+H+ I   G+   V + T+L++M ++C
Sbjct: 198 NKMRESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMNVVLATSLVNMFSRC 257

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
           G +  A +VF +M   +   W+AMI  Y  HG G +++ +F  M    V P+ +TF+ +L
Sbjct: 258 GDVGRARAVFYSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMKARGVVPNSVTFVAVL 317

Query: 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS- 392
            AC+H GL+DEG + F SM+ +YG+VPG++H+ CMVD+ GR G L+EAY+F+  L     
Sbjct: 318 SACAHAGLIDEGRSVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVKGLNSDEL 377

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452
            P +W  +L +C  H N  L  +V E +   +  + G YV+LSN+ A AGR + V+ +R 
Sbjct: 378 VPAVWTAMLGACKMHKNFDLGVEVAENLINAEPENPGHYVLLSNMYALAGRMDRVESVRN 437

Query: 453 LMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSL 512
           +M  RG+ K  G S+I+V+N    F  GD  H  + ++   LDEL+   K  GY P    
Sbjct: 438 VMIQRGLKKQVGYSTIDVDNRSYLFSMGDKSHPETNEIYCFLDELIWRCKDAGYAPVPES 497

Query: 513 VHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             H ++E EE+E ALRYHSEKLA+ FGL+ T  G T+R+VKNLR+C
Sbjct: 498 AMH-ELEGEEREYALRYHSEKLAVAFGLMKTGDGVTLRIVKNLRIC 542


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/542 (36%), Positives = 313/542 (57%), Gaps = 12/542 (2%)

Query: 22  PNALS---LLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PN  +   +L  CT  R +   +QIH++++KT  ++D+ V   LI+  ++      +E A
Sbjct: 343 PNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSK---YGWLEKA 399

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
             + + + E D+V + +M  GY + +    A+  F E+   G+ PD+    S +  CA  
Sbjct: 400 RRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCA-- 457

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
           G  A+ +G Q+H      G + ++ +   L+NLYA C  +  A   FE I     +++N 
Sbjct: 458 GINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNG 517

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +++ +A+S    EAL +F  + +  +K    T +SALS+ A L  +  GK IH  + K G
Sbjct: 518 LVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTG 577

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
                +V  ALI ++ KCG  +DA   F  MS ++  +W+ +I + + HG+G +++ +F+
Sbjct: 578 HSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFD 637

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
           +M K  + P+++TF+G+L ACSH GLV+EG +YF SM D+YGI P   HY C++D+ GRA
Sbjct: 638 QMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRA 697

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
           G+LD A +FI+E+PI +  ++WRTLLS+C  H N+ + +   + + EL+      YV+LS
Sbjct: 698 GQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLS 757

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           N  A   +W + D +RK+M+DRGV K PG S IEV NVV  FF GD +H  +  +   L 
Sbjct: 758 NAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLA 817

Query: 496 ELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNL 555
            +   +  VGY  +   + H D E E ++     HSEKLA+TFGL++ PP   +RV+KNL
Sbjct: 818 VINDRVAKVGYKQEKYHLFH-DKEQEGRDPTDLVHSEKLAVTFGLMSLPPCMPLRVIKNL 876

Query: 556 RV 557
           RV
Sbjct: 877 RV 878



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 200/410 (48%), Gaps = 14/410 (3%)

Query: 21  TPNALS-LLPRCTS---FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           TP  LS +L  CT    F   + IHA   K    +++ V   +I    +     S   A 
Sbjct: 142 TPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLR---CGSFRLAE 198

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +F  +P  D V FNT+  G+++      A+ +F E+  SGL PD  +  SLL ACA +G
Sbjct: 199 RVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLG 258

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
              L++G QLH +  K G++S+  +  +L++LY +C DVE A  IF +     VV +N +
Sbjct: 259 D--LQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLM 316

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           + A+ + +   ++  LF ++Q   ++P   T    L +C     +DLG+ IH    K G 
Sbjct: 317 LVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGF 376

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
           +  + V+  LIDM++K G L+ A  V + +  KD  +W++MI  Y  H     ++  F+E
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKE 436

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M K  + PD I     +  C+    + +G    ++     G    +  +  +V+L  R G
Sbjct: 437 MQKCGIWPDNIGLASAISGCAGINAMRQGLQ-IHARIYVSGYSGDVSIWNALVNLYARCG 495

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
           R+ EA+   +E+  K   I W  L+S  +     GL ++ ++    +D S
Sbjct: 496 RIREAFSSFEEIEHKD-EITWNGLVSGFAQS---GLHEEALKVFMRMDQS 541



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 183/369 (49%), Gaps = 7/369 (1%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           +IHA  +   L     V   LI+  ++N        A  +F+ +   D V +  M  GY+
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLP---ARRVFEELSARDNVSWVAMLSGYA 119

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
           ++     A+ L+ ++  +G++P  Y   S+L +C    AE   +G+ +H    K G  S 
Sbjct: 120 QNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSC--TKAELFAQGRLIHAQGYKHGFCSE 177

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
           ++V   +I LY  C     A R+F ++     V++N +I+ +A+      AL +F E+Q 
Sbjct: 178 IFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQF 237

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
             L P  VT+ S L++CA LG L  G  +H Y+ K G+     +  +L+D++ KCG ++ 
Sbjct: 238 SGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVET 297

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A+ +F++    +   W+ M+VA+       KS  +F +M  A + P++ T+  +L  C+ 
Sbjct: 298 ALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTC 357

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
           T  +D G    +S+  K G    +   G ++D+  + G L++A R ++ L  K   + W 
Sbjct: 358 TREIDLG-EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDV-VSWT 415

Query: 399 TLLSSCSSH 407
           ++++    H
Sbjct: 416 SMIAGYVQH 424


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/591 (35%), Positives = 333/591 (56%), Gaps = 64/591 (10%)

Query: 25  LSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           +++LP C S + L   K+IH+  I+     D  V   LI+   +     SM  A  +F+ 
Sbjct: 263 VNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAK---CGSMNDAVKVFNV 319

Query: 82  IPEPDIVLFNTMARGYSRS----------------KTPI-------------------RA 106
           +   D+V +N M  GY++S                  P+                    A
Sbjct: 320 MEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEA 379

Query: 107 IFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS--------- 157
           +  F +++  G  P+  +  SLL ACA +GA  L +G ++H +++K  L S         
Sbjct: 380 LDAFQQMILDGSEPNSVTIISLLSACASLGA--LSQGMEIHAYSLKKCLLSLDNDFGGDG 437

Query: 158 ---NLYVCTTLINLYAECSDVEAARRIFENI--SEPCVVSYNAIITAYARSSRPNEALSL 212
              +L V   LI++Y++C   +AAR IF++I   E  VV++  +I  YA+    N+AL +
Sbjct: 438 DGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKI 497

Query: 213 FRELQER--NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK---YGLDKYVKVNTALI 267
           F E+  +   + P   T+   L +CA L +L +GK IH Y+ +   Y    Y   N  LI
Sbjct: 498 FSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVAN-CLI 556

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
           DM++KCG +D A +VFD+M  ++  +W++M+  Y  HG+G +++ +F++M KA   PD+I
Sbjct: 557 DMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDI 616

Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
           +FL LLYACSH+G+VD+G NYF  MR  Y +V   +HY C++DLL R GRLD+A++ I E
Sbjct: 617 SFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQE 676

Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447
           +P++ + ++W  LLS+C  H+N+ LA+  + ++  +   + G Y ++SN+ A A RW+DV
Sbjct: 677 MPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDV 736

Query: 448 DYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYV 507
             +R+LMK  G+ K PGCS ++       FF GD  H  S ++   L+ L+  +K++GYV
Sbjct: 737 ARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYV 796

Query: 508 PDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           P+T+   H D++DEEK   L  HSEKLA+ +GLL T PG  IR+ KNLRVC
Sbjct: 797 PETNFALH-DVDDEEKNNLLSEHSEKLALAYGLLTTSPGCPIRITKNLRVC 846



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 143/284 (50%), Gaps = 11/284 (3%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           + +R+     V +N + R + +     RAI +   +L +G  PD ++ P  LKAC  + +
Sbjct: 105 VLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPS 164

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC---VVSYN 194
                G+ LH      G  SN++VC  L+ +Y+ C  +E A  +F+ I+      V+S+N
Sbjct: 165 YCC--GRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWN 222

Query: 195 AIITAYARSSRPNEALSLFREL------QERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
           +I+ A+ + S P  AL LF E+      +  N +   +++++ L +CA L +L   K IH
Sbjct: 223 SIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIH 282

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
            Y  + G      V  ALID +AKCG ++DAV VF+ M  KD  +W+AM+  Y   G   
Sbjct: 283 SYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFG 342

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
            +  +FE M K  +  D IT+  ++   +  G   E  + F  M
Sbjct: 343 AAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQM 386



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 114/286 (39%), Gaps = 64/286 (22%)

Query: 12  SPPPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTH-----LQNDLNVLTKLINFC 63
           S P  +  N      +L  C     L   KQIHA   + H     +    N L  + + C
Sbjct: 503 SKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKC 562

Query: 64  TQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDY 123
                   ++ A  +FD +P+ + V + +M  GY        A+ +F ++  +G +PDD 
Sbjct: 563 ------GDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDI 616

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           SF  LL AC+             H   +  GLN                   +  RR ++
Sbjct: 617 SFLVLLYACS-------------HSGMVDQGLNY-----------------FDIMRRDYD 646

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
            ++      Y  +I   AR  R ++A   ++ +QE  ++P+ V  ++ LS+C +  +++L
Sbjct: 647 VVAS--AEHYACVIDLLARCGRLDKA---WKTIQEMPMEPSAVIWVALLSACRVHSNVEL 701

Query: 244 GKWIHEYIKKYGLDKYVKVN-------TALIDMHAKCGRLDDAVSV 282
                    +Y L+K V +        T + +++A   R  D   +
Sbjct: 702 A--------EYALNKLVNMKAENDGSYTLISNIYANARRWKDVARI 739


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/560 (38%), Positives = 323/560 (57%), Gaps = 12/560 (2%)

Query: 2   ATTPSP-PITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLI 60
           A  PS  P+ Q+   +      N L    R  S R   Q+HA  +K  LQ    V   LI
Sbjct: 8   AIKPSQNPLNQNSFEQNYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLI 67

Query: 61  NFC--TQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118
           N    TQ P  S       +FD  P+     ++++   +++++ P+ A+  F  +LN G+
Sbjct: 68  NLYSKTQLPLFSLQ-----VFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGV 122

Query: 119 LPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAA 178
            PDD+ +PS  KAC  +     + GK +HC A+K G   +++V ++L+++YA+C ++  A
Sbjct: 123 RPDDHIYPSATKACGFL--RRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDA 180

Query: 179 RRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL 238
           R +F+ + E  VVS++ +I  YA+     EAL+LF++    ++   D T  S +  C+  
Sbjct: 181 RHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSS 240

Query: 239 GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMI 298
             L+LGK IH    K   D    V +ALI +++KCG ++ A  VFD +  ++   W++M+
Sbjct: 241 TFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSML 300

Query: 299 VAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGI 358
           +A A H    +   +FEEM    + P+ I FL +LYACSH GLV++G  YF  MRD YGI
Sbjct: 301 IACAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYACSHAGLVEKGREYFSLMRD-YGI 359

Query: 359 VPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
            P  +HY  +VDLLGRAG+L EA   I ++P++ T  +W  LL+ C  H +  +A  V +
Sbjct: 360 EPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVAD 419

Query: 419 RIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFF 478
           RI E+D S  G +V+LSN  A AGR+E+   +RK+++DRGV K  G S +E  N V  F 
Sbjct: 420 RILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFT 479

Query: 479 SGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITF 538
           +GD  H+   ++ + L+EL +E++  GYV DTS V    ++ EEK   +RYHSE+LAI F
Sbjct: 480 AGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRA-VDGEEKNETIRYHSERLAIAF 538

Query: 539 GLLNTPPGTTIRVVKNLRVC 558
           GL+  PPG  IRV+KNLRVC
Sbjct: 539 GLITFPPGRPIRVMKNLRVC 558


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/549 (37%), Positives = 319/549 (58%), Gaps = 14/549 (2%)

Query: 12  SPPPKLCTNT--PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTT 69
           S  P L T T   +A  LL      RG   +H   +K+    D+++   LI   +   + 
Sbjct: 294 SVDPDLITMTTVASACELLDNERLGRG---VHGYVVKSEFGGDISMNNSLIQMYS---SL 347

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
             +E A  +F R+   D+V +  M       K P +A+  +  +   G+LPD+ +  S+L
Sbjct: 348 GRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVL 407

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC 189
            ACAC+G   L+ G +LH  AIK GL S++ V  +LI++Y++C  V+ A  +F NIS   
Sbjct: 408 SACACIGH--LDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKN 465

Query: 190 VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           VVS+ ++I     ++R  EAL  FR+++E ++KP  VT++S LS+CA +G+L  GK IH 
Sbjct: 466 VVSWTSLILGLRINNRSFEALLFFRQMKE-SMKPNSVTLISVLSACARIGALMRGKEIHA 524

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
           +  + G+     +  A++DM+ +CGR   A++ F N   KD  AW+ ++  YA  GQ   
Sbjct: 525 HALRTGVGFDGFLPNAILDMYVRCGRKVPALNQF-NSQKKDVTAWNILLTGYAQQGQAKL 583

Query: 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369
           ++ +F++M++ ++ PDEITF+ LL ACS +G+V EG  YF  M++KY + P +KHY C+V
Sbjct: 584 AVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVV 643

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429
           D+LGRAG+LD+AY FI ++PI+    +W  LL++C  H N+ L +   +R+FE D+   G
Sbjct: 644 DILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVG 703

Query: 430 DYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTD 489
            Y++L NL A  G W+ V  +R LM++RG+   PGCS +E+   V  F SGD  HS S +
Sbjct: 704 YYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKE 763

Query: 490 LQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTI 549
           +   LD    ++K  G+  +       ++E    +I    HSE+ AI FGL+NT PG  I
Sbjct: 764 INGVLDGFCSKMKENGF-GNLKSSFTSEIESSRADIFCG-HSERQAIAFGLINTAPGMPI 821

Query: 550 RVVKNLRVC 558
            V KNL +C
Sbjct: 822 WVTKNLYMC 830



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 178/327 (54%), Gaps = 4/327 (1%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +F ++ E D+  +N +  GY+++     A+ L+  +L + + P+ Y+FPS+LK CA 
Sbjct: 151 AWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCA- 209

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
            G   +  GK++H   I+ G  S++ V   LI +Y +C D+  AR +F+ + +   +S+N
Sbjct: 210 -GVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWN 268

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           A+I+ Y  +    E L LF  ++E ++ P  +TM +  S+C LL +  LG+ +H Y+ K 
Sbjct: 269 AMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKS 328

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
                + +N +LI M++  GRL++A +VF  M  KD  +W+AMI +  +H    K++  +
Sbjct: 329 EFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETY 388

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
           + M    + PDEIT + +L AC+  G +D G    + +  K G+V  +     ++D+  +
Sbjct: 389 KMMELEGILPDEITLVSVLSACACIGHLDLGIR-LHEIAIKTGLVSHVIVSNSLIDMYSK 447

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLL 401
              +D A      +  K+  + W +L+
Sbjct: 448 CKCVDNALEVFRNISGKNV-VSWTSLI 473



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 113/418 (27%), Positives = 216/418 (51%), Gaps = 15/418 (3%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  C     +   K+IHA  I+   ++D++V   LI   T       + +A +LFD++
Sbjct: 203 SVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALI---TMYVKCGDISNARMLFDKM 259

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           P+ D + +N M  GY  +   +  + LF  +    + PD  +  ++  AC  +  E L  
Sbjct: 260 PKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERL-- 317

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G+ +H + +K     ++ +  +LI +Y+    +E A  +F  +    VVS+ A+I +   
Sbjct: 318 GRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVS 377

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
              P +A+  ++ ++   + P ++T++S LS+CA +G LDLG  +HE   K GL  +V V
Sbjct: 378 HKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIV 437

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
           + +LIDM++KC  +D+A+ VF N+SGK+  +W+++I+    + +  +++L F + MK  +
Sbjct: 438 SNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQ-MKESM 496

Query: 323 SPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
            P+ +T + +L AC+  G +  G   + +++R   G    + +   ++D+  R GR   A
Sbjct: 497 KPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPN--AILDMYVRCGRKVPA 554

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439
               +    K     W  LL+  +      LA ++ +++ EL + H  +   +S LCA
Sbjct: 555 LNQFNSQ--KKDVTAWNILLTGYAQQGQAKLAVELFDKMLEL-EIHPDEITFISLLCA 609



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 144/296 (48%), Gaps = 22/296 (7%)

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLH--------CFAIKLGLNSNLYVCTTLINLYAEC 172
           ++ ++ +LL+ C      A +EG +++        C  ++LG          L++++   
Sbjct: 96  EEDAYIALLRLCEW--RRAPDEGSRVYELVSSSKSCLCVRLG--------NALLSMFVRF 145

Query: 173 SDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232
            ++  A  +F  +SE  V S+N ++  YA++   +EAL+L+  +    ++P   T  S L
Sbjct: 146 GNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVL 205

Query: 233 SSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ 292
            +CA +  +  GK IH ++ ++G +  V V  ALI M+ KCG + +A  +FD M  +D  
Sbjct: 206 KTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRI 265

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYS 351
           +W+AMI  Y  +G G + + +F  M +  V PD IT   +  AC        G   + Y 
Sbjct: 266 SWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYV 325

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
           ++ ++G    I     ++ +    GRL+EA      +  K   + W  +++S  SH
Sbjct: 326 VKSEFG--GDISMNNSLIQMYSSLGRLEEAETVFSRMESKDV-VSWTAMIASLVSH 378



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 88/195 (45%), Gaps = 2/195 (1%)

Query: 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267
           +A+     + E  ++  +   ++ L  C    + D G  ++E +        V++  AL+
Sbjct: 80  QAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNALL 139

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
            M  + G L DA  VF  MS +D  +W+ ++  YA  G   +++ ++  M+ A++ P+  
Sbjct: 140 SMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVY 199

Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
           TF  +L  C+    +  G    ++   ++G    +     ++ +  + G +  A    D+
Sbjct: 200 TFPSVLKTCAGVSDIARG-KEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDK 258

Query: 388 LPIKSTPILWRTLLS 402
           +P K   I W  ++S
Sbjct: 259 MP-KRDRISWNAMIS 272


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/519 (38%), Positives = 311/519 (59%), Gaps = 6/519 (1%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           IH++  KT    D+ V T ++ F ++      +  A  +FD +   ++V +  M  G   
Sbjct: 126 IHSLVFKTGFDCDVFVKTNVVCFYSK---CGFLRDAWKVFDDMVVKNVVSWTGMICGCIE 182

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
                 A+ LF  LL SGL PD +    +L+ACA +G   LE G+ +     + GL+ N+
Sbjct: 183 FGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGD--LESGRWIDRCMRECGLSRNV 240

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
           +V T+L+++Y +C  +E AR +F+ + E  +V ++A+I  YA +  P EA+ LF E+++ 
Sbjct: 241 FVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKV 300

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
           N++P    M+ ALSSCA LG+L+LG W    +          + T+LID +AKCG +++A
Sbjct: 301 NVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEA 360

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
           + V+  M  KD   ++A+I   A +GQ   +  +F +M K  + P+E TF+GLL  C+H 
Sbjct: 361 LGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHA 420

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRT 399
           GLVD+G +YF SM   + + P I+HYGCMVDLL RAG LDEA+  I  +P+K+  I+W +
Sbjct: 421 GLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGS 480

Query: 400 LLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459
           LL  C  H    LA+ V++++ EL+  + G YV+LSN+ + + RW++ + +R  + ++G+
Sbjct: 481 LLGGCRLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGM 540

Query: 460 LKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDME 519
            K+PG S +EV+ VV EF  GD  H  S  + + L+ L K+LK  GY P T  V   D+E
Sbjct: 541 QKLPGYSWVEVDGVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEFVLF-DVE 599

Query: 520 DEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +EEKE  L  HSEKLA+ F L++T     IRVVKNLRVC
Sbjct: 600 EEEKEHFLGCHSEKLAVAFALISTGAKYVIRVVKNLRVC 638



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 112/397 (28%), Positives = 201/397 (50%), Gaps = 19/397 (4%)

Query: 30  RCTSFRGLKQIHAVTIKTHLQNDL--NVLTKLINFCTQNPTTSSMEHAHLLFDRIP-EPD 86
           +C     L     + +  H  NDL   +L   INF      +++ ++  L+F + P   +
Sbjct: 15  KCLKHAKLAHCRLLRLNLHHDNDLLSIILRSTINF------SNNAQYPILVFHKTPTNSN 68

Query: 87  IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQL 146
             L+NTM RG         A+ L+  +  + ++PD ++F  +LKACA +    L  G  +
Sbjct: 69  TFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHL--GVMI 126

Query: 147 HCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRP 206
           H    K G + +++V T ++  Y++C  +  A ++F+++    VVS+  +I       + 
Sbjct: 127 HSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKF 186

Query: 207 NEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
            EA+ LFR L E  L+P    ++  L +CA LG L+ G+WI   +++ GL + V V T+L
Sbjct: 187 REAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSL 246

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           +DM+ KCG +++A  VFD M  KD   WSAMI  YA++G   ++I +F EM K  V PD 
Sbjct: 247 VDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDC 306

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA---YR 383
              +G L +C+  G ++ G N+   + +    +        ++D   + G ++EA   Y+
Sbjct: 307 YAMVGALSSCASLGALELG-NWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYK 365

Query: 384 FIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
            + E       +++  ++S  + +  +G A  V  ++
Sbjct: 366 MMKE----KDRVVFNAVISGLAMYGQVGAAFGVFGQM 398


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/549 (37%), Positives = 319/549 (58%), Gaps = 14/549 (2%)

Query: 12  SPPPKLCTNT--PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTT 69
           S  P L T T   +A  LL      RG   +H   +K+    D+++   LI   +   + 
Sbjct: 294 SVDPDLITMTTVASACELLDNERLGRG---VHGYVVKSEFGGDISMNNSLIQMYS---SL 347

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
             +E A  +F R+   D+V +  M       K P +A+  +  +   G+LPD+ +  S+L
Sbjct: 348 GRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVL 407

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC 189
            ACAC+G   L+ G +LH  AIK GL S++ V  +LI++Y++C  V+ A  +F NIS   
Sbjct: 408 SACACIGH--LDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKN 465

Query: 190 VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           VVS+ ++I     ++R  EAL  FR+++E ++KP  VT++S LS+CA +G+L  GK IH 
Sbjct: 466 VVSWTSLILGLRINNRSFEALLFFRQMKE-SMKPNSVTLISVLSACARIGALMRGKEIHA 524

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
           +  + G+     +  A++DM+ +CGR   A++ F N   KD  AW+ ++  YA  GQ   
Sbjct: 525 HALRTGVGFDGFLPNAILDMYVRCGRKVPALNQF-NSQKKDVTAWNILLTGYAQQGQAKL 583

Query: 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369
           ++ +F++M++ ++ PDEITF+ LL ACS +G+V EG  YF  M++KY + P +KHY C+V
Sbjct: 584 AVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVV 643

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429
           D+LGRAG+LD+AY FI ++PI+    +W  LL++C  H N+ L +   +R+FE D+   G
Sbjct: 644 DILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVG 703

Query: 430 DYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTD 489
            Y++L NL A  G W+ V  +R LM++RG+   PGCS +E+   V  F SGD  HS S +
Sbjct: 704 YYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKE 763

Query: 490 LQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTI 549
           +   LD    ++K  G+  +       ++E    +I    HSE+ AI FGL+NT PG  I
Sbjct: 764 INGVLDGFCSKMKENGF-GNLKSSFTSEIESSRADIFCG-HSERQAIAFGLINTAPGMPI 821

Query: 550 RVVKNLRVC 558
            V KNL +C
Sbjct: 822 WVXKNLYMC 830



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 178/327 (54%), Gaps = 4/327 (1%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +F ++ E D+  +N +  GY+++     A+ L+  +L + + P+ Y+FPS+LK CA 
Sbjct: 151 AWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCA- 209

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
            G   +  GK++H   I+ G  S++ V   LI +Y +C D+  AR +F+ + +   +S+N
Sbjct: 210 -GVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWN 268

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           A+I+ Y  +    E L LF  ++E ++ P  +TM +  S+C LL +  LG+ +H Y+ K 
Sbjct: 269 AMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKS 328

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
                + +N +LI M++  GRL++A +VF  M  KD  +W+AMI +  +H    K++  +
Sbjct: 329 EFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETY 388

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
           + M    + PDEIT + +L AC+  G +D G    + +  K G+V  +     ++D+  +
Sbjct: 389 KMMELEGILPDEITLVSVLSACACIGHLDLGIR-LHEIAIKTGLVSHVIVSNSLIDMYSK 447

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLL 401
              +D A      +  K+  + W +L+
Sbjct: 448 CKCVDNALEVFRNISGKNV-VSWTSLI 473



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 113/418 (27%), Positives = 216/418 (51%), Gaps = 15/418 (3%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  C     +   K+IHA  I+   ++D++V   LI   T       + +A +LFD++
Sbjct: 203 SVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALI---TMYVKCGDISNARMLFDKM 259

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           P+ D + +N M  GY  +   +  + LF  +    + PD  +  ++  AC  +  E L  
Sbjct: 260 PKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERL-- 317

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G+ +H + +K     ++ +  +LI +Y+    +E A  +F  +    VVS+ A+I +   
Sbjct: 318 GRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVS 377

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
              P +A+  ++ ++   + P ++T++S LS+CA +G LDLG  +HE   K GL  +V V
Sbjct: 378 HKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIV 437

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
           + +LIDM++KC  +D+A+ VF N+SGK+  +W+++I+    + +  +++L F + MK  +
Sbjct: 438 SNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQ-MKESM 496

Query: 323 SPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
            P+ +T + +L AC+  G +  G   + +++R   G    + +   ++D+  R GR   A
Sbjct: 497 KPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPN--AILDMYVRCGRKVPA 554

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439
               +    K     W  LL+  +      LA ++ +++ EL + H  +   +S LCA
Sbjct: 555 LNQFNSQ--KKDVTAWNILLTGYAQQGQAKLAVELFDKMLEL-EIHPDEITFISLLCA 609



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 144/296 (48%), Gaps = 22/296 (7%)

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLH--------CFAIKLGLNSNLYVCTTLINLYAEC 172
           ++ ++ +LL+ C      A +EG +++        C  ++LG          L++++   
Sbjct: 96  EEDAYIALLRLCEW--RRAPDEGSRVYELVSSSKSCLCVRLG--------NALLSMFVRF 145

Query: 173 SDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232
            ++  A  +F  +SE  V S+N ++  YA++   +EAL+L+  +    ++P   T  S L
Sbjct: 146 GNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVL 205

Query: 233 SSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ 292
            +CA +  +  GK IH ++ ++G +  V V  ALI M+ KCG + +A  +FD M  +D  
Sbjct: 206 KTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRI 265

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYS 351
           +W+AMI  Y  +G G + + +F  M +  V PD IT   +  AC        G   + Y 
Sbjct: 266 SWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYV 325

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
           ++ ++G    I     ++ +    GRL+EA      +  K   + W  +++S  SH
Sbjct: 326 VKSEFG--GDISMNNSLIQMYSSLGRLEEAETVFSRMESKDV-VSWTAMIASLVSH 378



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 88/195 (45%), Gaps = 2/195 (1%)

Query: 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267
           +A+     + E  ++  +   ++ L  C    + D G  ++E +        V++  AL+
Sbjct: 80  QAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNALL 139

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
            M  + G L DA  VF  MS +D  +W+ ++  YA  G   +++ ++  M+ A++ P+  
Sbjct: 140 SMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVY 199

Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
           TF  +L  C+    +  G    ++   ++G    +     ++ +  + G +  A    D+
Sbjct: 200 TFPSVLKTCAGVSDIARG-KEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDK 258

Query: 388 LPIKSTPILWRTLLS 402
           +P K   I W  ++S
Sbjct: 259 MP-KRDRISWNAMIS 272


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/521 (39%), Positives = 305/521 (58%), Gaps = 37/521 (7%)

Query: 72  MEHAHLLFD--RIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
           +E A  +F+  R  E D+V ++ M   Y +++    A+ LFVE+  SG+  D+    S L
Sbjct: 218 VEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSAL 277

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN----- 184
            AC+ V    +E G+ +H  A+K+G+   + +   LI+LY+ C ++  ARRIF++     
Sbjct: 278 SACSRV--LNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELL 335

Query: 185 ---------------------------ISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
                                      + E  VVS++A+I+ YA+    +EAL+LF+E+Q
Sbjct: 336 DLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQ 395

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              ++P +  ++SA+S+C  L +LDLGKWIH YI +  L   V ++T LIDM+ KCG ++
Sbjct: 396 LHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVE 455

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           +A+ VF  M  K    W+A+I+  A +G   +S+ MF +M K    P+EITF+G+L AC 
Sbjct: 456 NALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACR 515

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H GLV++G +YF SM  ++ I   IKHYGCMVDLLGRAG L EA   ID +P+      W
Sbjct: 516 HMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATW 575

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             LL +C  H +  + +++  ++ +L   H G +V+LSN+ A  G W +V  +R +M   
Sbjct: 576 GALLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQH 635

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           GV+K PGCS IE N  V EF +GD  H    D++  LD +  +LK+ GYVP TS V   D
Sbjct: 636 GVVKTPGCSMIEANGTVHEFLAGDKTHPQINDIEHMLDVVAAKLKIEGYVPTTSEVSL-D 694

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +++EEKE AL  HSEKLA+ FGL+   P T IRV KNLR+C
Sbjct: 695 IDEEEKETALFRHSEKLAVAFGLITISPPTPIRVTKNLRIC 735



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/428 (27%), Positives = 186/428 (43%), Gaps = 100/428 (23%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP 85
           SLL  C   R  KQ+ + TI T L  D    ++LINF + + T     ++  +F+ +  P
Sbjct: 8   SLLQSCKCPRHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLRNP 67

Query: 86  DIVLFNTMARGY-SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
           +   +NT+ R +     +P +A+  +   L S   PD Y++P LL+ CA   +E   EG+
Sbjct: 68  NTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEF--EGR 125

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           QLH  A+  G + ++YV  TL+NLYA C  V +ARR+FE      +VS+N ++  Y ++ 
Sbjct: 126 QLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAG 185

Query: 205 RPNEALSLFRELQERNL----------------------------KPTDVTMLSALSSC- 235
              EA  +F  + ERN                             +  D+   SA+ SC 
Sbjct: 186 EVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCY 245

Query: 236 --------------ALLGS---------------------LDLGKWIHEYIKKYGLDKYV 260
                          + GS                     +++G+W+H    K G++ YV
Sbjct: 246 EQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYV 305

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDN--------------------------------MSG 288
            +  ALI +++ CG + DA  +FD+                                M  
Sbjct: 306 SLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPE 365

Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WN 347
           KD  +WSAMI  YA H    +++ +F+EM    V PDE   +  + AC+H   +D G W 
Sbjct: 366 KDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWI 425

Query: 348 YFYSMRDK 355
           + Y  R+K
Sbjct: 426 HAYISRNK 433



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 139/265 (52%), Gaps = 6/265 (2%)

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130
           S++ A +LF  +PE D+V ++ M  GY++ +    A+ LF E+   G+ PD+ +  S + 
Sbjct: 352 SIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAIS 411

Query: 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV 190
           AC  +    L+ GK +H +  +  L  N+ + TTLI++Y +C  VE A  +F  + E  V
Sbjct: 412 ACTHLAT--LDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGV 469

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK-WIHE 249
            ++NA+I   A +    ++L++F ++++    P ++T +  L +C  +G ++ G+ + + 
Sbjct: 470 STWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNS 529

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQGH 308
            I ++ ++  +K    ++D+  + G L +A  + D+M    D   W A++ A   H    
Sbjct: 530 MIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNE 589

Query: 309 KSILMFEEMMKAQVSPDEITFLGLL 333
               +  +++  Q+ PD   F  LL
Sbjct: 590 MGERLGRKLI--QLQPDHDGFHVLL 612


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/562 (34%), Positives = 322/562 (57%), Gaps = 40/562 (7%)

Query: 31  CTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLF 90
           CT+    KQ+HA   + +L     V+T L+ F T  P      + HLLF ++  P+  L+
Sbjct: 21  CTTLNHAKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFSQVHSPNPFLY 80

Query: 91  NTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFA 150
           + + R Y+R+     +I L+  +LN+ + P  ++F +L         +    G QLH  A
Sbjct: 81  SALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLL-----KNPSLGSQLHLHA 135

Query: 151 IKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS------- 203
              G  ++LYV  T+I++Y +   ++ AR++F+ +    VV++  +I AYARS       
Sbjct: 136 FLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSAC 195

Query: 204 ------------------------SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG 239
                                   + P +AL  FR+++E  +   ++T++ A+S+CA LG
Sbjct: 196 ELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLG 255

Query: 240 SLDLGKWIHEYIK--KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297
                 WI E  +  ++G    V V +ALIDM++KCG +++A +VF  M   +  ++S+M
Sbjct: 256 VSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSM 315

Query: 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG 357
           IV +A HG+   +I +F EM++  + P+ +TF+GL  ACSH G+V++G   F +M++ YG
Sbjct: 316 IVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYG 375

Query: 358 IVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
           + P   HY CM DLLGRAG L++A + +  +P++    +W  LL +   H N  +A+   
Sbjct: 376 VSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAEIAS 435

Query: 418 ERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEV-NNVVRE 476
             +FEL+  + G+Y++LS   A A +W+DV  +RKLM+++ + K PGCS +E  N ++ E
Sbjct: 436 RSLFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEAKNGIIHE 495

Query: 477 FFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAI 536
           FF+GD  H    +++KALD+L++ LK  GY P  + V + D++DE K   L  HSEKLA+
Sbjct: 496 FFAGDVKHPEINEIKKALDDLLQRLKCTGYQPKLNSVPY-DIDDEGKRCLLVSHSEKLAL 554

Query: 537 TFGLLNTPPGTTIRVVKNLRVC 558
            +GLL+T  G+TI+++KNLR+C
Sbjct: 555 AYGLLSTDAGSTIKIMKNLRIC 576


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/584 (35%), Positives = 322/584 (55%), Gaps = 48/584 (8%)

Query: 9   ITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTH-LQNDLNVLTKLINFCTQNP 67
           IT +     CTN    LSLL      R  ++IH   IK   L +DL V   L+++  +  
Sbjct: 363 ITIASAVSACTN----LSLL------RHGREIHGYCIKVEELDSDLLVGNSLVDYYAK-- 410

Query: 68  TTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPS 127
              S+E A   F  I + D+V +N M  GY+   +   AI L  E+   G+ PD  ++  
Sbjct: 411 -CRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNG 469

Query: 128 LLKA---------------------------------CACVGAEALEEGKQLHCFAIKLG 154
           L+                                    AC     L+ GK++H + ++  
Sbjct: 470 LVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNH 529

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           +  +  V + LI++Y+ C  +E A  +F  +S   VV +N+II+A A+S R   AL L R
Sbjct: 530 IELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLR 589

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
           E+   N++   VTM+SAL +C+ L +L  GK IH++I + GLD    +  +LIDM+ +CG
Sbjct: 590 EMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCG 649

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
            +  +  +FD M  +D  +W+ MI  Y  HG G  ++ +F++     + P+ ITF  LL 
Sbjct: 650 SIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLS 709

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           ACSH+GL++EGW YF  M+ +Y + P ++ Y CMVDLL RAG+ +E   FI+++P +   
Sbjct: 710 ACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNA 769

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454
            +W +LL +C  H N  LA+     +FEL+    G+YV+++N+ + AGRWED   +R LM
Sbjct: 770 AVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLM 829

Query: 455 KDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVH 514
           K+RGV K PGCS IEV   +  F  GD  H     +   ++ L  ++K +GYVPDT+ V 
Sbjct: 830 KERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVL 889

Query: 515 HGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             D++++EKE +L  HSEK+A+ FGL++T  GT +R++KNLRVC
Sbjct: 890 Q-DVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVC 932



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 127/530 (23%), Positives = 226/530 (42%), Gaps = 104/530 (19%)

Query: 26  SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L +C     L+   Q+HA  +   +     + ++L+    Q   T  +E A  +FD++
Sbjct: 94  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQ---TGCVEDARRMFDKM 150

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
            E ++  +  +   Y         I LF  ++N G+ PD + FP + KAC+ +  +    
Sbjct: 151 SERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSEL--KNYRV 208

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS---------------- 186
           GK ++ + + +G   N  V  ++++++ +C  ++ ARR FE I                 
Sbjct: 209 GKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTS 268

Query: 187 -------------------EPCVVSYNAIITAYARSS------------------RPN-- 207
                              +P  V++NAII+ YA+S                   +PN  
Sbjct: 269 KGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVV 328

Query: 208 ----------------EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY- 250
                           EALS+FR++    +KP  +T+ SA+S+C  L  L  G+ IH Y 
Sbjct: 329 SWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYC 388

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310
           IK   LD  + V  +L+D +AKC  ++ A   F  +   D  +W+AM+  YA  G   ++
Sbjct: 389 IKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEA 448

Query: 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370
           I +  EM    + PD IT+ GL+   +  G       +F  M    G+ P        + 
Sbjct: 449 IELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHS-MGMDPNTTTISGALA 507

Query: 371 LLGRAGRL---DEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
             G+   L    E + ++    I+ +  +   L+S  S  ++L +A  V   +       
Sbjct: 508 ACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSEL------S 561

Query: 428 GGDYVILSNL---CARAGRWED-VDYLRKLMKDRGVLKVPGCSSIEVNNV 473
             D V+ +++   CA++GR  + +D LR++            S++EVN V
Sbjct: 562 TRDVVVWNSIISACAQSGRSVNALDLLREM----------NLSNVEVNTV 601



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 179/407 (43%), Gaps = 33/407 (8%)

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
           + S+L+ C  +    L  G Q+H   +  G++   ++ + L+ +Y +   VE ARR+F+ 
Sbjct: 92  YASILQKCRKL--YNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDK 149

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
           +SE  V S+ AI+  Y       E + LF  +    ++P          +C+ L +  +G
Sbjct: 150 MSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVG 209

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
           K +++Y+   G +    V  +++DM  KCGR+D A   F+ +  KD   W+ M+  Y + 
Sbjct: 210 KDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSK 269

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364
           G+  K++    +M  + V PD++T+  ++   + +G  +E   YF  M       P +  
Sbjct: 270 GEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVS 329

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE------ 418
           +  ++    + G   EA     ++ ++       T+ S+ S+  NL L +   E      
Sbjct: 330 WTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCI 389

Query: 419 RIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFF 478
           ++ ELD     D ++ ++L     +   V+  R+     G++K     S    N +   +
Sbjct: 390 KVEELDS----DLLVGNSLVDYYAKCRSVEVARRKF---GMIKQTDLVSW---NAMLAGY 439

Query: 479 SGDGVHSYSTDLQKALDELVKELKMVGYVPD--------TSLVHHGD 517
           +  G H  +        EL+ E+K  G  PD        T    +GD
Sbjct: 440 ALRGSHEEAI-------ELLSEMKFQGIEPDIITWNGLVTGFTQYGD 479


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/522 (35%), Positives = 317/522 (60%), Gaps = 7/522 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +Q+H +++ T    D +V  ++++F +++       +   LF+ +PE D V +N +   Y
Sbjct: 264 QQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRN---LFNEMPELDFVSYNVVISSY 320

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           S+++    ++ LF E+   G    ++ F ++L   A +   +L+ G+Q+HC AI    +S
Sbjct: 321 SQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANL--SSLQVGRQVHCQAIVATADS 378

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            L+V  +L+++YA+C   + A  IF+++S+   VS+ A+I+ Y +       L LF +++
Sbjct: 379 ILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMR 438

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
             NL+    T  + L + A   SL LGK +H +I + G  + V   + L+DM+AKCG + 
Sbjct: 439 GANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIK 498

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           DAV VF+ M  ++  +W+A+I AYA +G G  +I  F +M+++ + PD ++ LG+L ACS
Sbjct: 499 DAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACS 558

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H G V++G  +F +M   YGI P  KHY CM+DLLGR GR  EA + +DE+P +   I+W
Sbjct: 559 HCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMW 618

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDD-SHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
            ++L++C  + N  LA++  E++F ++       YV +SN+ A AG+WE+V +++K M++
Sbjct: 619 SSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAAAGKWENVRHVKKAMRE 678

Query: 457 RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHG 516
           RG+ KVP  S +EVN+ +  F S D  H    ++ K ++EL  E++  GY PDTS V   
Sbjct: 679 RGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVKKINELTTEIEREGYKPDTSSVVQ- 737

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           D++++ K  +L+YHSE+LA+ F L++TP G  I V+KNLR C
Sbjct: 738 DIDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRAC 779



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 153/335 (45%), Gaps = 10/335 (2%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +  A  LFD +P+  +V +  +   Y+ +     A  LF ++  S  LPD  +F +LL  
Sbjct: 91  LSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLLPG 150

Query: 132 CA-CVGAEALEEGKQLHCFAIKLGLNSNLY--VCTTLINLYAECSDVEAARRIFENISEP 188
           C   V   A+    Q+H FA+KLG ++NL+  VC  L+  Y E   ++ A  +FE I + 
Sbjct: 151 CNDAVPQNAV---GQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDK 207

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
             V++N +IT Y +     EA+ LF ++++   KP+D T    L +   L    LG+ +H
Sbjct: 208 DSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQLH 267

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
                 G  +   V   ++  ++K  R+ +  ++F+ M   D  +++ +I +Y+   Q  
Sbjct: 268 GLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYE 327

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG-C 367
           +S+ +F EM           F  +L   ++   +  G       +        I H G  
Sbjct: 328 ESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQ--VHCQAIVATADSILHVGNS 385

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
           +VD+  +    DEA      L  +ST + W  L+S
Sbjct: 386 LVDMYAKCEMFDEAELIFKSLSQRST-VSWTALIS 419



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           V  NT +I  + K G L  A  +FD M  +    W+ ++  YA +    ++  +F +M +
Sbjct: 76  VSTNT-MISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCR 134

Query: 320 AQVSPDEITFLGLLYACS 337
           +   PD +TF  LL  C+
Sbjct: 135 SCTLPDYVTFTTLLPGCN 152


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/569 (34%), Positives = 329/569 (57%), Gaps = 38/569 (6%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           + +L RC+S    K++HA     +LQ    VLTKL+   T  P      +  LLF ++  
Sbjct: 12  VRILERCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHT 71

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
           P+   +  + R Y+      +A+  +  +    + P  ++F +L  ACA V   AL  G 
Sbjct: 72  PNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSAL--GA 129

Query: 145 QLHCFAIKLG-LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN--------- 194
           QLH   + LG  +S+LYV   +I++Y +C  +  AR +F+ + E  V+S+          
Sbjct: 130 QLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRI 189

Query: 195 ----------------------AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232
                                 A++T YA+++ P +AL +FR L++  ++  +VT++  +
Sbjct: 190 GDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVI 249

Query: 233 SSCALLGSLDLGKWIHEYIKK--YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290
           S+CA LG+     WI +  +   +G+   V V +ALIDM++KCG +++A  VF  M  ++
Sbjct: 250 SACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERN 309

Query: 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350
             ++S+MIV +A HG+   +I +F +M++  V P+ +TF+G+L ACSH GLVD+G   F 
Sbjct: 310 VFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFA 369

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
           SM   YG+ P  + Y CM DLL RAG L++A + ++ +P++S   +W  LL +   H N 
Sbjct: 370 SMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNP 429

Query: 411 GLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEV 470
            +A+   +R+FEL+  + G+Y++LSN  A AGRW+DV  +RKL++++ + K PG S +E 
Sbjct: 430 DVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEA 489

Query: 471 -NNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRY 529
            N ++ +F +GD  H    +++K L++L++ LK +GY P+ S + +G + D EK + L  
Sbjct: 490 KNGMIHKFVAGDVSHPKINEIKKELNDLLERLKGIGYQPNLSSLPYG-INDREKRLLLMA 548

Query: 530 HSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           HSEKLA+ FGLL+T  G+TI+++KNLR+C
Sbjct: 549 HSEKLALAFGLLSTDVGSTIKIMKNLRIC 577


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  370 bits (950), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 204/572 (35%), Positives = 328/572 (57%), Gaps = 45/572 (7%)

Query: 24  ALSLLPRCTSFRGLKQIHA-VTIKTHLQNDLNVLTKLINFCTQNPTTSS---MEHAHLLF 79
           A++LL    +F+ ++QIHA + +   L++D      L+    +    S    +++A+ + 
Sbjct: 9   AIALLDSGITFKEVRQIHAKLYVDGTLKDD-----HLVGHFVKAVALSDHKYLDYANQIL 63

Query: 80  DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSG--LLPDDYSFPSLLKACACVGA 137
           DR  +P +   N+M R + +S  P ++   +  +L+SG  L PD+Y+   L++AC   G 
Sbjct: 64  DRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQAC--TGL 121

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE-------------------------- 171
              E G Q+H   I+ G +++ +V T LI+LYAE                          
Sbjct: 122 RMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMV 181

Query: 172 -----CSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV 226
                C DV  AR++FE + E   +++NA+I+ YA+     EAL++F  +Q   +K   V
Sbjct: 182 TACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGV 241

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
            M+S LS+C  LG+LD G+W H YI++  +   V++ T L+D++AKCG ++ A+ VF  M
Sbjct: 242 AMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGM 301

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
             K+   WS+ +   A +G G K + +F  M +  V+P+ +TF+ +L  CS  G VDEG 
Sbjct: 302 EEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQ 361

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
            +F SMR+++GI P ++HYGC+VDL  RAGRL++A   I ++P+K    +W +LL +   
Sbjct: 362 RHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRM 421

Query: 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCS 466
           + NL L     +++ EL+ ++ G YV+LSN+ A +  W++V ++R+ MK +GV K PGCS
Sbjct: 422 YKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCS 481

Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
            +EVN  V EFF GD  H   T +     ++ + L++ GY  DT+ V   D+++EEKE A
Sbjct: 482 VMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMF-DIDEEEKEDA 540

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           L  HSEK AI FG+++      IR+VKNLRVC
Sbjct: 541 LCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVC 572


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 188/522 (36%), Positives = 313/522 (59%), Gaps = 7/522 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +Q+HA+++ T    D +V  ++++F +++     +    +LFD +PE D V +N +   Y
Sbjct: 270 QQLHALSVTTGFSRDASVGNQILDFYSKH---DRVLETRMLFDEMPELDFVSYNVVISSY 326

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           S++     ++  F E+   G    ++ F ++L   A + +  L+ G+QLHC A+    +S
Sbjct: 327 SQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSS--LQMGRQLHCQALLATADS 384

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            L+V  +L+++YA+C   E A  IF+++ +   VS+ A+I+ Y +       L LF +++
Sbjct: 385 ILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMR 444

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
             NL+    T  + L + A   SL LGK +H +I + G  + V   + L+DM+AKCG + 
Sbjct: 445 GSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIK 504

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           DAV VF+ M  ++  +W+A+I A+A +G G  +I  F +M+++ + PD ++ LG+L ACS
Sbjct: 505 DAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACS 564

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H G V++G  YF +M   YGI P  KHY CM+DLLGR GR  EA + +DE+P +   I+W
Sbjct: 565 HCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMW 624

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDD-SHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
            ++L++C  H N  LA++  E++F ++       YV +SN+ A AG WE V  ++K M++
Sbjct: 625 SSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRE 684

Query: 457 RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHG 516
           RG+ KVP  S +EVN+ +  F S D  H    ++ + ++EL  E++  GY PDTS V   
Sbjct: 685 RGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQ- 743

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           D++++ K  +L+YHSE+LA+ F L++TP G  I V+KNLR C
Sbjct: 744 DVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRAC 785



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 201/411 (48%), Gaps = 22/411 (5%)

Query: 26  SLLPRCTSF---RGLKQIHAVTIKTHLQND-----LNVLTKLINFCTQNPTTSSMEHAHL 77
           +LLP C        + Q+HA  +K     +      NVL K  ++C        ++ A +
Sbjct: 152 TLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLK--SYCE----VRRLDLACV 205

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           LF+ IPE D V FNT+  GY +      +I LF+++  SG  P D++F  +LKA   VG 
Sbjct: 206 LFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAV--VGL 263

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
                G+QLH  ++  G + +  V   +++ Y++   V   R +F+ + E   VSYN +I
Sbjct: 264 HDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVI 323

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
           ++Y+++ +   +L  FRE+Q       +    + LS  A L SL +G+ +H        D
Sbjct: 324 SSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATAD 383

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
             + V  +L+DM+AKC   ++A  +F ++  + T +W+A+I  Y   G     + +F +M
Sbjct: 384 SILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKM 443

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
             + +  D+ TF  +L A +    +  G    ++   + G +  +     +VD+  + G 
Sbjct: 444 RGSNLRADQSTFATVLKASASFASLLLG-KQLHAFIIRSGNLENVFSGSGLVDMYAKCGS 502

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNN----LGLAKQVIERIFELD 424
           + +A +  +E+P ++  + W  L+S+ + + +    +G   ++IE   + D
Sbjct: 503 IKDAVQVFEEMPDRNA-VSWNALISAHADNGDGEAAIGAFAKMIESGLQPD 552



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 152/340 (44%), Gaps = 12/340 (3%)

Query: 69  TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSG--LLPDDYSFP 126
           T  +  A  LFD +P+  +V +  +   Y+R+     A  LF ++  S    LPD  +F 
Sbjct: 92  TGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFT 151

Query: 127 SLLKACA-CVGAEALEEGKQLHCFAIKLGLNSN--LYVCTTLINLYAECSDVEAARRIFE 183
           +LL  C   V   A+    Q+H FA+KLG ++N  L V   L+  Y E   ++ A  +FE
Sbjct: 152 TLLPGCNDAVPQNAV---GQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFE 208

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
            I E   V++N +IT Y +     E++ LF ++++   +P+D T    L +   L    L
Sbjct: 209 EIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFAL 268

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303
           G+ +H      G  +   V   ++D ++K  R+ +   +FD M   D  +++ +I +Y+ 
Sbjct: 269 GQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQ 328

Query: 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK 363
             Q   S+  F EM           F  +L   ++   +  G       +        I 
Sbjct: 329 ADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQ--LHCQALLATADSIL 386

Query: 364 HYG-CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
           H G  +VD+  +    +EA      LP ++T + W  L+S
Sbjct: 387 HVGNSLVDMYAKCEMFEEAELIFKSLPQRTT-VSWTALIS 425



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 111/239 (46%), Gaps = 7/239 (2%)

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
           + N     T+I+ + +  DV +AR +F+ + +  VV++  ++  YAR+S  +EA  LFR+
Sbjct: 76  HKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQ 135

Query: 216 LQERN--LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK--YVKVNTALIDMHA 271
           +   +    P  VT  + L  C      +    +H +  K G D   ++ V+  L+  + 
Sbjct: 136 MCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYC 195

Query: 272 KCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLG 331
           +  RLD A  +F+ +  KD+  ++ +I  Y   G   +SI +F +M ++   P + TF G
Sbjct: 196 EVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSG 255

Query: 332 LLYACSHTGLVDEGW-NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389
           +L A    GL D       +++    G          ++D   +  R+ E     DE+P
Sbjct: 256 VLKAV--VGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMP 312


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 201/557 (36%), Positives = 325/557 (58%), Gaps = 41/557 (7%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           +K++H    +  + +D+ V   LI+   +      +E A  +FD +   D+V + +++  
Sbjct: 183 VKEVHDDATRCGVMSDVFVGNALIHAYGK---CKCVEGARRVFDDLVVRDVVSWTSLSSC 239

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           Y +   P + + +F E+  SG+ P+  +  S+L ACA +  + L+ GK++H FA++ G+ 
Sbjct: 240 YVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAEL--KDLKSGKEIHGFAVRHGMV 297

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS------------- 203
            NL+VC+ L++LYA+C  V  AR +F+ +    VVS+N ++TAY ++             
Sbjct: 298 VNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKM 357

Query: 204 ----------------------SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSL 241
                                  R  EA+ +FR++Q+   KP ++T+ S L +C+   +L
Sbjct: 358 SRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENL 417

Query: 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
            +GK IH Y+ ++     +   TAL+ M+AKCG L+ + +VFD M  KD  AW+ MI+A 
Sbjct: 418 RMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIAN 477

Query: 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG 361
           A HG G +++ +F++M+ ++V P+ +TF G+L  CSH+ LV+EG   F SM   + + P 
Sbjct: 478 AMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPD 537

Query: 362 IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421
             HY C+VD+  RAGRL+EAY+FI  +P++ T   W  LL++C  + N+ LAK   +++F
Sbjct: 538 ANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLF 597

Query: 422 ELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGD 481
           E++ ++ G+YV L N+   A  W +   +R LMK+RG+ K PGCS ++V N V  F  GD
Sbjct: 598 EIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGD 657

Query: 482 GVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLL 541
             +  S  +   LDELV+++KM GY PDT  V   D++ EEK  +L  HSEKLA+ FG+L
Sbjct: 658 KSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQ-DIDQEEKAESLCNHSEKLAVAFGIL 716

Query: 542 NTPPGTTIRVVKNLRVC 558
           N    +TIRV KNLR+C
Sbjct: 717 NLNGQSTIRVFKNLRIC 733



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 152/287 (52%), Gaps = 3/287 (1%)

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
            A  LFD IP+PD    +T+    +       AI ++  L   G+ PD   F +  KACA
Sbjct: 116 RARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACA 175

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
            V  +AL   K++H  A + G+ S+++V   LI+ Y +C  VE ARR+F+++    VVS+
Sbjct: 176 -VSGDALRV-KEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSW 233

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
            ++ + Y +   P + + +FRE+    +KP  +T+ S L +CA L  L  GK IH +  +
Sbjct: 234 TSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVR 293

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
           +G+   + V +AL+ ++AKC  + +A  VFD M  +D  +W+ ++ AY  + +  K   +
Sbjct: 294 HGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSL 353

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP 360
           F +M +  V  DE T+  ++  C   G  +E    F  M+ K G  P
Sbjct: 354 FLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQ-KMGFKP 399



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 149/323 (46%), Gaps = 50/323 (15%)

Query: 22  PNAL---SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PN +   S+LP C   + LK   +IH   ++  +  +L V + L++   +     S+  A
Sbjct: 263 PNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAK---CLSVREA 319

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC--- 132
            ++FD +P  D+V +N +   Y ++K   +   LF+++   G+  D+ ++ +++  C   
Sbjct: 320 RMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMEN 379

Query: 133 ------------------------------ACVGAEALEEGKQLHCFAIKLGLNSNLYVC 162
                                         AC  +E L  GK++HC+  +     +L   
Sbjct: 380 GRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTST 439

Query: 163 TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK 222
           T L+ +YA+C D+  +R +F+ +    VV++N +I A A      EAL LF ++    ++
Sbjct: 440 TALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQ 499

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN----TALIDMHAKCGRLDD 278
           P  VT    LS C+    ++ G  I   +   G D  V+ +    + ++D++++ GRL++
Sbjct: 500 PNSVTFTGVLSGCSHSRLVEEGVQIFNSM---GRDHLVEPDANHYSCVVDIYSRAGRLNE 556

Query: 279 AVSVFDNMSGKDT-QAWSAMIVA 300
           A      M  + T  AW A++ A
Sbjct: 557 AYKFIQGMPMEPTASAWGALLAA 579



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 134/280 (47%), Gaps = 4/280 (1%)

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           SFP L +     GAE L   + +   ++   + S+L +   LI +     D   AR++F+
Sbjct: 65  SFPVLKRFELSNGAEFLLSTEAMVPPSLPTNIPSHLGL--RLIRVALNVGDFNRARQLFD 122

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
           NI +P   + + +I+A       NEA+ ++  LQER +KP     L+A  +CA+ G    
Sbjct: 123 NIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALR 182

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303
            K +H+   + G+   V V  ALI  + KC  ++ A  VFD++  +D  +W+++   Y  
Sbjct: 183 VKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVK 242

Query: 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK 363
            G   K + +F EM  + V P+ +T   +L AC+    +  G    +    ++G+V  + 
Sbjct: 243 CGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSG-KEIHGFAVRHGMVVNLF 301

Query: 364 HYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
               +V L  +   + EA    D +P +   + W  +L++
Sbjct: 302 VCSALVSLYAKCLSVREARMVFDLMPHRDV-VSWNGVLTA 340


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 201/536 (37%), Positives = 318/536 (59%), Gaps = 11/536 (2%)

Query: 26  SLLPRCTS---FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           SLL  C     F   KQ+H+  I++ L +D+ V   L++   +   ++++E++  +F+ +
Sbjct: 253 SLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAK---SAAVENSRKIFNTM 309

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
              +++ +  +  GY +S+    AI LF  +L+  + P+ ++F S+LKACA +    +  
Sbjct: 310 LHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGI-- 367

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           GKQLH   IKLGL++   V  +LIN+YA    +E AR+ F  + E  ++SYN    A A+
Sbjct: 368 GKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAK 427

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
           +   +E+ +   E++   +  +  T    LS  A +G++  G+ IH  I K G    + +
Sbjct: 428 ALDSDESFN--HEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCI 485

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
           N ALI M++KCG  + A+ VF++M  ++   W+++I  +A HG   K++ +F EM++  V
Sbjct: 486 NNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGV 545

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            P+E+T++ +L ACSH GL+DE W +F SM   + I P ++HY CMVDLLGR+G L EA 
Sbjct: 546 KPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAI 605

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
            FI+ +P  +  ++WRT L SC  H N  L +   ++I E +      Y++LSNL A  G
Sbjct: 606 EFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEG 665

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           RW+DV  LRK MK + ++K  G S IEV+N V +F  GD  H  +  +   LDEL  ++K
Sbjct: 666 RWDDVAALRKSMKQKKLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDELALKIK 725

Query: 503 MVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +GY+P+T  V H D+EDE+KE  L  HSEK+A+ + L++TP    IRV KNLRVC
Sbjct: 726 NLGYIPNTDFVLH-DVEDEQKEQYLFQHSEKIAVAYALISTPKPKPIRVFKNLRVC 780



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 166/342 (48%), Gaps = 22/342 (6%)

Query: 3   TTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINF 62
           TT SP I  S   K C  + N              K +H   I + L  D  +L  LI  
Sbjct: 34  TTTSPLIKSSLLLKACIRSGN----------LELGKLLHHKLIDSGLPLDSVLLNSLITL 83

Query: 63  CTQNPTTSSMEHAHLLFDRIP--EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSG--- 117
            ++       E+A  +F  +   + D+V ++ +   ++ +    RA+  F+ +L      
Sbjct: 84  YSK---CGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNI 140

Query: 118 LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG-LNSNLYVCTTLINLYAECS-DV 175
           + P++Y F +LL++C+         G  +  F +K G  +S++ V   LI+++ +   D+
Sbjct: 141 IYPNEYCFTALLRSCS--NPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDI 198

Query: 176 EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSC 235
           ++AR +F+ +    +V++  +IT Y++    ++A+ LF  L      P   T+ S LS+C
Sbjct: 199 QSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSAC 258

Query: 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWS 295
             L    LGK +H ++ + GL   V V   L+DM+AK   ++++  +F+ M   +  +W+
Sbjct: 259 VELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWT 318

Query: 296 AMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           A+I  Y    Q  ++I +F  M+   V+P+  TF  +L AC+
Sbjct: 319 ALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACA 360


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 187/502 (37%), Positives = 296/502 (58%), Gaps = 33/502 (6%)

Query: 88  VLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLH 147
           V +N +  G++R      +   FV++  +G  P   ++ S+L AC   G   +  G Q+H
Sbjct: 88  VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACG-KGTRDVLLGMQVH 146

Query: 148 CFAIKLGLNSNLYVCTTLINLYAECSD-------------------------------VE 176
              +  G+  +L V   L+++YAEC+D                               V+
Sbjct: 147 GRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVD 206

Query: 177 AARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236
            AR +F+ + E   VS+ A+I  Y  ++R  EAL +FRE+Q  N+   + TM+S +++CA
Sbjct: 207 EARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACA 266

Query: 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSA 296
            LG+L++G+W+  Y+ + G+     V  ALIDM++KCG ++ A+ VF  M  +D   W+A
Sbjct: 267 QLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTA 326

Query: 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKY 356
           +I+  A +G   ++I MF  M++   +PDE+TF+G+L AC+H GLVD+G  +F SM + Y
Sbjct: 327 IILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAY 386

Query: 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQV 416
            I P + HYGC++DLLGRAG++ EA   ID++P+     +W TLL++C  H N  + + V
Sbjct: 387 NIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELV 446

Query: 417 IERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVRE 476
            ER+ ELD  +   Y++LSN+ A+  RWEDV  LR  + ++G+ K PGCS IE++ ++ E
Sbjct: 447 AERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHE 506

Query: 477 FFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAI 536
           F +GD  H  S ++   L+ ++ +L  VGY PD + V     E E+K++ L +HSEKLAI
Sbjct: 507 FVAGDQSHPMSKEIYSKLESIISDLNNVGYFPDVTEVFVEVAEKEKKKV-LYWHSEKLAI 565

Query: 537 TFGLLNTPPGTTIRVVKNLRVC 558
            F LL++ P T IR+VKNLR+C
Sbjct: 566 AFALLSSKPNTVIRIVKNLRMC 587



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 149/312 (47%), Gaps = 41/312 (13%)

Query: 106 AIFLFVELLNSGLLPDDYSFPSLLKACA--CVGAEALEEGKQLHCFAIKLGLNSNLYVCT 163
           A+  +  +L  G  PD Y+FP+LLKA A    G+ +    + +H   ++LG+  N +V +
Sbjct: 3   AVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVAS 62

Query: 164 TLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKP 223
           +L+  Y    D  AAR +      P  V++NA+I+ + R  R  E+   F ++      P
Sbjct: 63  SLVAAYTAGGDGAAARALVGECDTP--VAWNALISGHNRGGRFGESCGSFVDMARAGAAP 120

Query: 224 TDVTMLSALSSCALLGSLD--LGKWIHEYIKKYGLDKYVKVNTALIDMHAKC-------- 273
           T VT +S LS+C   G+ D  LG  +H  +   G+   ++V  AL+DM+A+C        
Sbjct: 121 TPVTYVSVLSACG-KGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWK 179

Query: 274 -----------------------GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310
                                  G++D+A  +FD M  +DT +W+AMI  Y    +  ++
Sbjct: 180 VFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREA 239

Query: 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMV 369
           + MF EM  + VS DE T + ++ AC+  G ++ G W   Y  R   GI         ++
Sbjct: 240 LEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQ--GIKMDAFVGNALI 297

Query: 370 DLLGRAGRLDEA 381
           D+  + G ++ A
Sbjct: 298 DMYSKCGSIERA 309


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 207/564 (36%), Positives = 321/564 (56%), Gaps = 40/564 (7%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTH--LQNDL--NVLTKLINFCTQNPTTSSMEHAHLL 78
           S+LP C+    L   K+IHA  ++ +  ++N    + L  +   C Q      +E    +
Sbjct: 302 SVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQ------VESGRRV 355

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN-SGLLPDDYSFPSLLKACACVGA 137
           FD I    I L+N M  GY+R+    +A+ LF+E++  +GLLP+  +  S++ AC  V  
Sbjct: 356 FDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPAC--VHC 413

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
           EA    + +H +A+KLG   + YV   L+++Y+    ++ +  IF+++     VS+N +I
Sbjct: 414 EAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMI 473

Query: 198 TAYARSSRPNEALSLFRELQERN-----------------LKPTDVTMLSALSSCALLGS 240
           T Y  S R + AL L  E+Q                     KP  +T+++ L  CA L +
Sbjct: 474 TGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAA 533

Query: 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVA 300
           +  GK IH Y  +  L   + V +AL+DM+AKCG L+ +  VF+ M  K+   W+ +I+A
Sbjct: 534 IAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMA 593

Query: 301 YATHGQGHKSILMFEEMMK-----AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355
              HG+G +++ +F+ M+       +  P+E+TF+ +  ACSH+GL+ EG N FY M+  
Sbjct: 594 CGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHD 653

Query: 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI-LWRTLLSSCSSHNNLGLAK 414
           +G+ P   HY C+VDLLGRAG+L+EAY  ++ +P +   +  W +LL +C  H N+ L +
Sbjct: 654 HGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGE 713

Query: 415 QVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVV 474
              + +  L+ +    YV+LSN+ + AG W     +RK M+  GV K PGCS IE  + V
Sbjct: 714 VAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEV 773

Query: 475 REFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKL 534
            +F +GD  H  S  L   L+ L ++++  GYVPDTS V H +++++EKE  L  HSEKL
Sbjct: 774 HKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLH-NVDEDEKENLLCGHSEKL 832

Query: 535 AITFGLLNTPPGTTIRVVKNLRVC 558
           AI FG+LNTPPGTTIRV KNLRVC
Sbjct: 833 AIAFGILNTPPGTTIRVAKNLRVC 856



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 171/313 (54%), Gaps = 10/313 (3%)

Query: 95  RGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
           R  +RS     AI  ++E+  SG  PD+++FP++LKA +  G + L+ G+Q+H  A+K G
Sbjct: 65  RSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVS--GLQDLKTGEQIHAAAVKFG 122

Query: 155 L-NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLF 213
             +S++ V  TL+N+Y +C  +    ++F+ I++   VS+N+ I A  R  +  +AL  F
Sbjct: 123 YGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAF 182

Query: 214 RELQERNLKPTDVTMLSALSSCALLG---SLDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270
           R +Q  N++ +  T++S   +C+ LG    L LGK +H Y  + G D+    N AL+ M+
Sbjct: 183 RAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVG-DQKTFTNNALMAMY 241

Query: 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           AK GR+DD+ ++F++   +D  +W+ MI +++   +  +++  F  M+   V  D +T  
Sbjct: 242 AKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIA 301

Query: 331 GLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389
            +L ACSH   +D G   + Y +R+   ++        +VD+     +++   R  D + 
Sbjct: 302 SVLPACSHLERLDVGKEIHAYVLRNN-DLIENSFVGSALVDMYCNCRQVESGRRVFDHIL 360

Query: 390 IKSTPILWRTLLS 402
            +    LW  ++S
Sbjct: 361 GRRIE-LWNAMIS 372



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 200/389 (51%), Gaps = 18/389 (4%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIK-THLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFD 80
           P  L  +      +  +QIHA  +K  +  + + V   L+N   +      +     +FD
Sbjct: 96  PAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGK---CGGIGDVCKVFD 152

Query: 81  RIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA-EA 139
           RI + D V +N+      R +   +A+  F  +    +    ++  S+  AC+ +G    
Sbjct: 153 RITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHG 212

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
           L  GKQLH +++++G +   +    L+ +YA+   V+ ++ +FE+  +  +VS+N +I++
Sbjct: 213 LRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISS 271

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI-KKYGLDK 258
           +++S R +EAL+ FR +    ++   VT+ S L +C+ L  LD+GK IH Y+ +   L +
Sbjct: 272 FSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIE 331

Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
              V +AL+DM+  C +++    VFD++ G+  + W+AMI  YA +G   K++++F EM+
Sbjct: 332 NSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMI 391

Query: 319 K-AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH----YGCMVDLLG 373
           K A + P+  T   ++ AC H     E ++   S+   Y +  G K        ++D+  
Sbjct: 392 KVAGLLPNTTTMASVMPACVHC----EAFSNKESIHG-YAVKLGFKEDRYVQNALMDMYS 446

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLS 402
           R G++D +    D + ++   + W T+++
Sbjct: 447 RMGKMDISETIFDSMEVRDR-VSWNTMIT 474


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 202/509 (39%), Positives = 293/509 (57%), Gaps = 30/509 (5%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRS-----------KTPIRAIFLFVELLN----SGLL 119
           A  +FDR+PE D V +NTM  GY+++           ++P+R +F +  +++    +G+L
Sbjct: 223 ARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGML 282

Query: 120 ----------PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLY 169
                     P+  S          V  + +++ ++L     +     N+    T+I  Y
Sbjct: 283 DEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQAREL----FEAMPCQNVSSWNTMITGY 338

Query: 170 AECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTML 229
           A+  D+  AR  F+ + +   +S+ AII  YA+S    EAL LF E++    +    T  
Sbjct: 339 AQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFT 398

Query: 230 SALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK 289
           S LS+CA + +L+LGK +H  + K GL+    V  AL+ M+ KCG +DDA  VF+ +  K
Sbjct: 399 STLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEK 458

Query: 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYF 349
           +  +W+ MI  YA HG G +++++FE M K  + PD++T +G+L ACSHTGLVD+G  YF
Sbjct: 459 EVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYF 518

Query: 350 YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
           YSM   YGI    KHY CM+DLLGRAGRLD+A   +  +P +     W  LL +   H N
Sbjct: 519 YSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGN 578

Query: 410 LGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIE 469
             L ++  + IFE++  + G YV+LSNL A +GRW DV  +R  M+DRGV KVPG S +E
Sbjct: 579 TELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVE 638

Query: 470 VNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRY 529
           V N +  F  GD VH     +   L+EL  ++K  GYV  T LV H D+E+EEK   L+Y
Sbjct: 639 VQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLH-DVEEEEKVHMLKY 697

Query: 530 HSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           HSEKLA+ FG+L  P G  IRV+KNLRVC
Sbjct: 698 HSEKLAVAFGILAIPAGRPIRVIKNLRVC 726



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 173/390 (44%), Gaps = 43/390 (11%)

Query: 52  DLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFV 111
           DL     +I+ C +     ++  A LLFD++PE D+V +N M  GY+++     A  +F 
Sbjct: 110 DLVSWNVMISGCVR---YRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFD 166

Query: 112 ELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE 171
           E+       +  S+  +L A    G   +E+ ++L  F  K       + C  ++  Y +
Sbjct: 167 EM----PCKNSISWNGMLAAYVQNG--RIEDARRL--FESKADWELISWNC--MMGGYVK 216

Query: 172 CSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSA 231
            + +  AR IF+ + E   VS+N +I+ YA++    EA  LF E   R++  T   M+S 
Sbjct: 217 RNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV-FTWTAMVSG 275

Query: 232 LSSCALL-------------GSLDLGKWIHEYIKKYGLDKYVKVNTA-----------LI 267
                +L              S+     I  Y++   +D+  ++  A           +I
Sbjct: 276 YVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMI 335

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
             +A+ G +  A + FD M  +D+ +W+A+I  YA  G G +++ +F EM +     +  
Sbjct: 336 TGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRS 395

Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
           TF   L  C+    ++ G    +    K G+  G      ++ +  + G +D+AY   + 
Sbjct: 396 TFTSTLSTCAEIAALELG-KQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEG 454

Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
           +  K   + W T+++  + H   G  K+ +
Sbjct: 455 IEEKEV-VSWNTMIAGYARH---GFGKEAL 480



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 122/253 (48%), Gaps = 22/253 (8%)

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
           ++ AAR +F+ + E  VVS+NA+++ YA++    EA  +F E+  +N     ++    L+
Sbjct: 126 NLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKN----SISWNGMLA 181

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
           +    G ++  + + E    + L  +      ++  + K  RL DA  +FD M  +D  +
Sbjct: 182 AYVQNGRIEDARRLFESKADWELISW----NCMMGGYVKRNRLVDARGIFDRMPERDEVS 237

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSP--DEITFLGLLYACSHTGLVDEGWNYFYS 351
           W+ MI  YA +G+  ++  +FEE      SP  D  T+  ++      G++DE    F  
Sbjct: 238 WNTMISGYAQNGELLEAQRLFEE------SPVRDVFTWTAMVSGYVQNGMLDEARRVFDG 291

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
           M +K  +      +  ++    +  R+D+A    + +P ++    W T+++  + + ++ 
Sbjct: 292 MPEKNSV-----SWNAIIAGYVQCKRMDQARELFEAMPCQNVSS-WNTMITGYAQNGDIA 345

Query: 412 LAKQVIERIFELD 424
            A+   +R+ + D
Sbjct: 346 QARNFFDRMPQRD 358



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 91/186 (48%), Gaps = 12/186 (6%)

Query: 20  NTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKL-INFCTQNPTTSSMEHA 75
           N     S L  C     L   KQ+H   +K  L++   V   L + +C       +++ A
Sbjct: 393 NRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCK----CGNIDDA 448

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
           +++F+ I E ++V +NTM  GY+R      A+ LF  +  +G+LPDD +   +L AC+  
Sbjct: 449 YIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHT 508

Query: 136 GAEALEEGKQ-LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS-EPCVVSY 193
           G   +++G +  +      G+ +N    T +I+L      ++ A+ + +N+  EP   ++
Sbjct: 509 G--LVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATW 566

Query: 194 NAIITA 199
            A++ A
Sbjct: 567 GALLGA 572



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/245 (20%), Positives = 108/245 (44%), Gaps = 22/245 (8%)

Query: 176 EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSC 235
           ++A R+F ++     +S+NA+I+    + +   A  LF ++  R+L   +V     +S C
Sbjct: 66  DSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDLVSWNVM----ISGC 121

Query: 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWS 295
               +L   + + + + +  +  +     A++  +A+ G + +A  +FD M  K++ +W+
Sbjct: 122 VRYRNLRAARLLFDQMPERDVVSW----NAMLSGYAQNGYVKEAKEIFDEMPCKNSISWN 177

Query: 296 AMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355
            M+ AY  +G+   +  +FE     ++         + + C   G V    N     R  
Sbjct: 178 GMLAAYVQNGRIEDARRLFESKADWEL---------ISWNCMMGGYVKR--NRLVDARGI 226

Query: 356 YGIVPGIKH--YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413
           +  +P      +  M+    + G L EA R  +E P++     W  ++S    +  L  A
Sbjct: 227 FDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV-FTWTAMVSGYVQNGMLDEA 285

Query: 414 KQVIE 418
           ++V +
Sbjct: 286 RRVFD 290



 Score = 43.1 bits (100), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 102/218 (46%), Gaps = 28/218 (12%)

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           VK N A+ + H + G+ D A+ +F++M  + + +W+AMI    ++ + + +  +FE+M  
Sbjct: 50  VKWNIAITN-HMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKM-- 106

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
              + D +++  ++  C     +      F  M ++      +  +  M+    + G + 
Sbjct: 107 --PTRDLVSWNVMISGCVRYRNLRAARLLFDQMPER-----DVVSWNAMLSGYAQNGYVK 159

Query: 380 EAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439
           EA    DE+P K++ I W  +L++   +  +  A+    R+FE       D+ ++S  C 
Sbjct: 160 EAKEIFDEMPCKNS-ISWNGMLAAYVQNGRIEDAR----RLFE----SKADWELISWNCM 210

Query: 440 RAGRWEDVDYLR--KLMKDRGVL-KVPGCSSIEVNNVV 474
             G      Y++  +L+  RG+  ++P    +  N ++
Sbjct: 211 MGG------YVKRNRLVDARGIFDRMPERDEVSWNTMI 242


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 206/546 (37%), Positives = 319/546 (58%), Gaps = 9/546 (1%)

Query: 13  PPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSM 72
           P P   T+   A   LP     +G   IH   IKT    + +V   L++   +      +
Sbjct: 261 PNPFALTSVLKAAVCLPSVVLGKG---IHGCAIKTLNDTEPHVGGALLDMYAK---CGDI 314

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
           + A L F+ IP  D++L + M   Y++S    +A  LF+ L+ S +LP++YS  S+L+AC
Sbjct: 315 KDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQAC 374

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
                  L+ GKQ+H  AIK+G  S+L+V   L++ YA+C+D++++ +IF ++ +   VS
Sbjct: 375 --TNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVS 432

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +N I+  +++S    EALS+F E+Q   +  T VT  S L +CA   S+     IH  I+
Sbjct: 433 WNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIE 492

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           K   +    +  +LID +AKCG + DA+ VF ++  +D  +W+A+I  YA HGQ   ++ 
Sbjct: 493 KSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALE 552

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           +F+ M K+ V  ++ITF+ LL  CS TGLV+ G + F SMR  +GI P ++HY C+V LL
Sbjct: 553 LFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLL 612

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432
           GRAGRL++A +FI ++P   + ++WR LLSSC  H N+ L +   E+I E++      YV
Sbjct: 613 GRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYV 672

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
           +LSN+ A AG  + V  LRK M++ GV KVPG S +E+   +  F  G   H     +  
Sbjct: 673 LLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINA 732

Query: 493 ALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVV 552
            L+ L  +    GY+PD ++V H D++ E+K   L  HSE+LA+ +GL+ TPPG  IR++
Sbjct: 733 MLEWLNLKTSREGYIPDINVVLH-DVDKEQKTRMLWVHSERLALAYGLVMTPPGHPIRIL 791

Query: 553 KNLRVC 558
           KNLR C
Sbjct: 792 KNLRSC 797



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 205/404 (50%), Gaps = 8/404 (1%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           +H+   K    ++  V + LI+  +     S  EH   +F+ I   D V++  M   YS 
Sbjct: 184 VHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEH---VFNGIVRKDAVVWTAMVSCYSE 240

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
           +  P  A  +F ++  SG  P+ ++  S+LKA  C+ +  L  GK +H  AIK   ++  
Sbjct: 241 NDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVL--GKGIHGCAIKTLNDTEP 298

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
           +V   L+++YA+C D++ AR  FE I    V+  + +I+ YA+S++  +A  LF  L   
Sbjct: 299 HVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRS 358

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
           ++ P + ++ S L +C  +  LD GK IH +  K G +  + V  AL+D +AKC  +D +
Sbjct: 359 SVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSS 418

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
           + +F ++   +  +W+ ++V ++  G G +++ +F EM  AQ+   ++T+  +L AC+ T
Sbjct: 419 LKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACAST 478

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRT 399
             +        S+ +K            ++D   + G + +A +    L ++   I W  
Sbjct: 479 ASIRHAGQIHCSI-EKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHL-MERDIISWNA 536

Query: 400 LLSSCSSHNNLGLAKQVIERIFELD-DSHGGDYVILSNLCARAG 442
           ++S  + H     A ++ +R+ + + +S+   +V L ++C+  G
Sbjct: 537 IISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTG 580



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 162/349 (46%), Gaps = 7/349 (2%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  LFDR+PE ++V F T+ + +++      A  LF  L   G   + +   ++LK    
Sbjct: 115 ARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIA 174

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           + A  L  G  +H  A KLG + N +V + LI+ Y+ CS V  A  +F  I     V + 
Sbjct: 175 MDAAGLAGG--VHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWT 232

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           A+++ Y+ +  P  A  +F +++    KP    + S L +   L S+ LGK IH    K 
Sbjct: 233 AMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKT 292

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
             D    V  AL+DM+AKCG + DA   F+ +   D    S MI  YA   Q  ++  +F
Sbjct: 293 LNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELF 352

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
             +M++ V P+E +   +L AC++   +D G    ++   K G    +     ++D   +
Sbjct: 353 LRLMRSSVLPNEYSLSSVLQACTNMVQLDFG-KQIHNHAIKIGHESDLFVGNALMDFYAK 411

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
              +D + +    L   +  + W T++   S     GL ++ +    E+
Sbjct: 412 CNDMDSSLKIFSSLR-DANEVSWNTIVVGFSQS---GLGEEALSVFCEM 456



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 73/338 (21%), Positives = 148/338 (43%), Gaps = 24/338 (7%)

Query: 95  RGYSRSKTPIRAIFLFVELLNSGLLP-----DDYSFPSLLKACACVGAEALEEGKQLHCF 149
           RG++     ++  +L  EL +  +LP     D ++    L+ C   G      G+ +H  
Sbjct: 29  RGFAAYAAALQ--WLEDELTSLAILPSVPGVDSFACARQLQGCIARGDA--RGGRAVHGH 84

Query: 150 AIKLGLNS--NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPN 207
            ++ G     +L+    L+N+Y +   + +ARR+F+ + E  +VS+  ++ A+A+     
Sbjct: 85  VVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFE 144

Query: 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267
            A +LFR L+    +     + + L     + +  L   +H    K G D    V + LI
Sbjct: 145 AAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLI 204

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
           D ++ C  + DA  VF+ +  KD   W+AM+  Y+ +     +  +F +M  +   P+  
Sbjct: 205 DAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPF 264

Query: 328 TFLGLLYA--CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI 385
               +L A  C  + ++ +G  +  +++      P +   G ++D+  + G + +A    
Sbjct: 265 ALTSVLKAAVCLPSVVLGKGI-HGCAIKTLNDTEPHVG--GALLDMYAKCGDIKDARLAF 321

Query: 386 DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
           + +P     +L   +     S+ N        E+ FEL
Sbjct: 322 EMIPYDDVILLSFMISRYAQSNQN--------EQAFEL 351


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 193/552 (34%), Positives = 328/552 (59%), Gaps = 12/552 (2%)

Query: 11  QSPPPKLCTNTPNALSLLPRCT---SFRGLKQIHAVTIKTHLQNDLNVLTKLIN-FCTQN 66
           Q    ++  N    L++LP C      R LK++H  + +   Q+      +L N F    
Sbjct: 341 QIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQH-----VELSNAFILAY 395

Query: 67  PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFP 126
               ++  A  +F  I +  +  +N +  G++++  P +A+ L  ++  SG  PD ++  
Sbjct: 396 AKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTIS 455

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS 186
           SLL ACA +  ++L+ GK++H + ++ GL ++ +V T+L++ Y  C    +AR +F+ + 
Sbjct: 456 SLLLACAHL--KSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMK 513

Query: 187 EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW 246
           +  +VS+NA+I+ Y+++  P E+L+LFR+     ++  ++ ++S   +C+ L +L LGK 
Sbjct: 514 DKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKE 573

Query: 247 IHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ 306
            H Y+ K    +   V  ++IDM+AK G + ++  VFD +  K+  +W+A+IVA+  HG 
Sbjct: 574 AHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGH 633

Query: 307 GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG 366
           G ++I ++E M K    PD  T++G+L AC H GLV+EG  YF  M++   I P ++HY 
Sbjct: 634 GKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYA 693

Query: 367 CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
           C++D+L RAGRLD+A R ++E+P ++   +W +LL SC +   L + ++V +++ EL+  
Sbjct: 694 CLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPD 753

Query: 427 HGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSY 486
              +YV+LSNL A  G+W+ V  +R++MK+ G+ K  GCS IEV   V  F  GD +   
Sbjct: 754 KAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQPK 813

Query: 487 STDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPG 546
           S +++     L + +  +GY P+TS V H ++ +EEK   LR HSEKLAI+FGLL T  G
Sbjct: 814 SAEIRVIWRRLEERISEIGYKPNTSSVLH-EVGEEEKIDILRGHSEKLAISFGLLKTTKG 872

Query: 547 TTIRVVKNLRVC 558
           TT+R+ KNLR+C
Sbjct: 873 TTLRIYKNLRIC 884



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 178/318 (55%), Gaps = 13/318 (4%)

Query: 27  LLPRCTSFRGL---KQIHA-VTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           LL  C + + +   +++H  V+  TH +ND  + T+LI          S   + L+FD +
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKM---YAMCGSPLDSRLVFDNM 105

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELL-NSGLLPDDYSFPSLLKACACVGAEALE 141
              +++ +N +  GY+R+      + +F++L+ ++   PD+++FPS++KAC   G   + 
Sbjct: 106 ETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACG--GILDVR 163

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G+ +H   IK+GL  +++V   L+ +Y +C  V+ A ++F+ + E  +VS+N++I A++
Sbjct: 164 LGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFS 223

Query: 202 RSSRPNEALSLFRE-LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
            +    ++  L  E L E  L P  VT+++ L  CA  G +D+G  IH    K GL + V
Sbjct: 224 ENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEV 283

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM--M 318
            VN A++ M++KCG L++A   F   + K+  +W+ MI A++  G  +++  + +EM   
Sbjct: 284 MVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQ 343

Query: 319 KAQVSPDEITFLGLLYAC 336
             ++  +E+T L +L AC
Sbjct: 344 GEEMKANEVTILNVLPAC 361



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 161/302 (53%), Gaps = 9/302 (2%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           IH + IK  L  D+ V   L+    +     +++ A  +FD +PE ++V +N+M   +S 
Sbjct: 168 IHGMVIKMGLVLDVFVGNALVGMYGK---CGAVDEAMKVFDFMPETNLVSWNSMICAFSE 224

Query: 100 SKTPIRAIFLFVELLNS-GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
           +     +  L +E+L   GLLPD  +  ++L  CA  G   ++ G  +H  A+KLGL+  
Sbjct: 225 NGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCA--GEGEVDIGMGIHGLAVKLGLSEE 282

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
           + V   ++ +Y++C  +  A+  F   +   VVS+N +I+A++     NEA +L +E+Q 
Sbjct: 283 VMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQI 342

Query: 219 RN--LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           +   +K  +VT+L+ L +C     L   K +H Y  ++   ++V+++ A I  +AKCG L
Sbjct: 343 QGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCF-QHVELSNAFILAYAKCGAL 401

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           + A  VF  +  K   +W+A+I  +A +G   K++ +  +M  +   PD  T   LL AC
Sbjct: 402 NSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLAC 461

Query: 337 SH 338
           +H
Sbjct: 462 AH 463



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 98/200 (49%), Gaps = 9/200 (4%)

Query: 232 LSSCALLGSLDLGKWIHEYIKK--YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK 289
           L +C     ++ G+ +H+++    +  + YV +NT LI M+A CG   D+  VFDNM  K
Sbjct: 50  LQACGNQKDIETGRRLHKFVSDSTHYRNDYV-LNTRLIKMYAMCGSPLDSRLVFDNMETK 108

Query: 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMK-AQVSPDEITFLGLLYACSHTGLVDEGWNY 348
           +   W+A++  Y  +G     + +F +++      PD  TF  ++ AC     V  G   
Sbjct: 109 NLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLG-EV 167

Query: 349 FYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408
            + M  K G+V  +     +V + G+ G +DEA +  D +P ++  + W +++ + S + 
Sbjct: 168 IHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMP-ETNLVSWNSMICAFSEN- 225

Query: 409 NLGLAKQVIERIFELDDSHG 428
             G ++   + + E+    G
Sbjct: 226 --GFSRDSFDLLMEMLGEEG 243


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 201/548 (36%), Positives = 329/548 (60%), Gaps = 14/548 (2%)

Query: 19  TNTPNAL----SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSS 71
            ++PN+     S+L  C + R L   +Q+H   + + L  D  + TKL++          
Sbjct: 56  ASSPNSYHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYA---ACGL 112

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           + HA  LFD +P+ ++ L+N + R Y+R      AI L+  +++ G+ PD++++P  LKA
Sbjct: 113 VGHARRLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKA 172

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           CA      LE G+++H   +      +++VC  L+++YA+C  V+ AR +F+ I     V
Sbjct: 173 CAA--LLDLETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSV 230

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
            +N++I AY ++ RP EALSL R++    + PT  T++S +S+ A   +L  G+ +H + 
Sbjct: 231 VWNSMIAAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFG 290

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            + G D+  K+ T+L+DM+AK G +  A  +F+ +  ++  +W+AMI  Y  HG   +++
Sbjct: 291 WRRGFDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEAL 350

Query: 312 LMFEEM-MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370
            +F +M ++AQV+PD ITF+G+L AC+H G+V E   +F  M D Y I P ++H+ C+VD
Sbjct: 351 KLFNKMRVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVD 410

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430
           +LG AGR +EAY  I  +P++    +W  LL+ C  H N+ L +  ++++ EL+    G+
Sbjct: 411 VLGHAGRFEEAYDLIKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGN 470

Query: 431 YVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDL 490
           YV+LSN+ A++G+WE    +RKLM +RG+ K+ GCS IE+      F  GD  H  S ++
Sbjct: 471 YVLLSNIYAQSGKWEKAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEI 530

Query: 491 QKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIR 550
            + L+ L   +   GY+PDT  V H D+ D+EK   +R HSE+LAI FGL++TP GT + 
Sbjct: 531 YEELERLEGLMSDAGYMPDTMPVFH-DVGDDEKRNMMRSHSERLAIAFGLISTPSGTKLL 589

Query: 551 VVKNLRVC 558
           V KNLRVC
Sbjct: 590 VTKNLRVC 597


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 203/537 (37%), Positives = 315/537 (58%), Gaps = 11/537 (2%)

Query: 25  LSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           +S+LP     + L+    IH    ++  ++ +NV   L++   +     S   A L+F  
Sbjct: 250 VSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFK---CGSARIARLVFKG 306

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +    +V +NTM  G +++     A   F+++L+ G +P   +   +L ACA +G   LE
Sbjct: 307 MRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGD--LE 364

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G  +H    KL L+SN+ V  +LI++Y++C  V+ A  IF N+ E   V++NA+I  YA
Sbjct: 365 RGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNL-EKTNVTWNAMILGYA 423

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++    EAL+LF  +Q + +K    T++  +++ A        KWIH    +  +D  V 
Sbjct: 424 QNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVF 483

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V+TAL+DM+AKCG +  A  +FD M  +    W+AMI  Y THG G +++ +F EM K  
Sbjct: 484 VSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGA 543

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           V P++ITFL ++ ACSH+G V+EG   F SM++ Y + P + HY  MVDLLGRAG+LD+A
Sbjct: 544 VKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDA 603

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
           + FI E+PIK    +   +L +C  H N+ L ++  +++F+LD   GG +V+L+N+ A  
Sbjct: 604 WNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASN 663

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
             W+ V  +R  M+D+G+ K PGCS +E+ N +  F+SG   H  S  +   L+ L  E+
Sbjct: 664 SMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDEI 723

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K  GYVPD   +H  D+E++ K+  L  HSE+LAI FGLLNT PGTT+ + KNLRVC
Sbjct: 724 KAAGYVPDPDSIH--DVEEDVKKQLLSSHSERLAIAFGLLNTSPGTTLHIRKNLRVC 778



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 203/398 (51%), Gaps = 20/398 (5%)

Query: 10  TQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLIN-FC---TQ 65
           + S P ++ ++   ++ LL  CTS + L QI    IK    N+    TK+I+ FC   + 
Sbjct: 36  SNSIPTRVYSHRHPSVVLLENCTSKKELYQILPFIIKNGFYNEHLFQTKVISLFCKFGSN 95

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL--NSGLLPDDY 123
           +      EH  L  D       VL++ M +GY+++ +   A+  F+ ++     L+  DY
Sbjct: 96  SEAARVFEHVELKLD-------VLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDY 148

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           +   LL+ C       L++G+++H   I  G  SNL+V T +++LYA+C  ++ A ++FE
Sbjct: 149 A--CLLQLCG--ENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFE 204

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
            +    +VS+  ++  YA++     AL L  ++QE   KP  VT++S L + A + +L +
Sbjct: 205 RMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRI 264

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303
           G+ IH Y  + G +  V V  AL+DM+ KCG    A  VF  M  K   +W+ MI   A 
Sbjct: 265 GRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQ 324

Query: 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK 363
           +G+  ++   F +M+     P  +T +G+L AC++ G ++ GW + + + DK  +   + 
Sbjct: 325 NGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGW-FVHKLLDKLKLDSNVS 383

Query: 364 HYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
               ++ +  +  R+D A    + L  + T + W  ++
Sbjct: 384 VMNSLISMYSKCKRVDIAASIFNNL--EKTNVTWNAMI 419


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 197/570 (34%), Positives = 333/570 (58%), Gaps = 39/570 (6%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFC----TQNPTTSSMEHAHLLFD 80
           L+LL  C+SF  LK IH   ++THL +D+ V ++L+  C    T N  T+ + +A+ +F 
Sbjct: 16  LALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFS 75

Query: 81  RIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEAL 140
           +I  P++ +FN + R +S    P +A   + ++L S + PD+ +FP L+KA + +  E +
Sbjct: 76  QIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEM--ECV 133

Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY 200
             G+Q H   ++ G  +++YV  +L+++YA C  + AA RIF  +    VVS+ +++  Y
Sbjct: 134 LVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGY 193

Query: 201 ARSSRPNEALSLFRELQERNL-----------------KPTDV--------------TML 229
            +      A  +F E+  RNL                 K  D+               M+
Sbjct: 194 CKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMV 253

Query: 230 SALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK 289
           S +SSCA LG+L+ G+  +EY+ K  +   + + TAL+DM  +CG ++ A+ VF+ +   
Sbjct: 254 SVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPET 313

Query: 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYF 349
           D+ +WS++I   A HG  HK++  F +M+     P ++TF  +L ACSH GLV++G   +
Sbjct: 314 DSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIY 373

Query: 350 YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
            +M+  +GI P ++HYGC+VD+LGRAG+L EA  FI ++ +K    +   LL +C  + N
Sbjct: 374 ENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKN 433

Query: 410 LGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIE 469
             +A++V   + ++   H G YV+LSN+ A AG+W+ ++ LR +MK++ V K PG S IE
Sbjct: 434 TEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIE 493

Query: 470 VNNVVREFFSGDGV-HSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALR 528
           ++  + +F  GD   H     +++  +E++ +++++GY  +T      D+++EEKE ++ 
Sbjct: 494 IDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFF-DVDEEEKESSIH 552

Query: 529 YHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            HSEKLAI +G++ T PGTTIR+VKNLRVC
Sbjct: 553 MHSEKLAIAYGMMKTKPGTTIRIVKNLRVC 582


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 201/557 (36%), Positives = 325/557 (58%), Gaps = 41/557 (7%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           +K++H    +  + +D+ V   LI+   +      +E A  +FD +   D+V + +++  
Sbjct: 97  VKEVHDDATRCGVMSDVFVGNALIHAYGK---CKCVEGARRVFDDLVVRDVVSWTSLSSC 153

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           Y +   P + + +F E+  SG+ P+  +  S+L ACA +  + L+ GK++H FA++ G+ 
Sbjct: 154 YVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAEL--KDLKSGKEIHGFAVRHGMV 211

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS------------- 203
            NL+VC+ L++LYA+C  V  AR +F+ +    VVS+N ++TAY ++             
Sbjct: 212 VNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKM 271

Query: 204 ----------------------SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSL 241
                                  R  EA+ +FR++Q+   KP ++T+ S L +C+   +L
Sbjct: 272 SRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENL 331

Query: 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
            +GK IH Y+ ++     +   TAL+ M+AKCG L+ + +VFD M  KD  AW+ MI+A 
Sbjct: 332 RMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIAN 391

Query: 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG 361
           A HG G +++ +F++M+ ++V P+ +TF G+L  CSH+ LV+EG   F SM   + + P 
Sbjct: 392 AMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPD 451

Query: 362 IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421
             HY C+VD+  RAGRL+EAY+FI  +P++ T   W  LL++C  + N+ LAK   +++F
Sbjct: 452 ANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLF 511

Query: 422 ELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGD 481
           E++ ++ G+YV L N+   A  W +   +R LMK+RG+ K PGCS ++V N V  F  GD
Sbjct: 512 EIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGD 571

Query: 482 GVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLL 541
             +  S  +   LDELV+++KM GY PDT  V   D++ EEK  +L  HSEKLA+ FG+L
Sbjct: 572 KSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQ-DIDQEEKAESLCNHSEKLAVAFGIL 630

Query: 542 NTPPGTTIRVVKNLRVC 558
           N    +TIRV KNLR+C
Sbjct: 631 NLNGQSTIRVFKNLRIC 647



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 152/286 (53%), Gaps = 3/286 (1%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  LFD IP+PD    +T+    +       AI ++  L   G+ PD   F +  KACA 
Sbjct: 31  ARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACA- 89

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           V  +AL   K++H  A + G+ S+++V   LI+ Y +C  VE ARR+F+++    VVS+ 
Sbjct: 90  VSGDALRV-KEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWT 148

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           ++ + Y +   P + + +FRE+    +KP  +T+ S L +CA L  L  GK IH +  ++
Sbjct: 149 SLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRH 208

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
           G+   + V +AL+ ++AKC  + +A  VFD M  +D  +W+ ++ AY  + +  K   +F
Sbjct: 209 GMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLF 268

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP 360
            +M +  V  DE T+  ++  C   G  +E    F  M+ K G  P
Sbjct: 269 LKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQ-KMGFKP 313



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 148/323 (45%), Gaps = 50/323 (15%)

Query: 22  PNAL---SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PN +   S+LP C   + LK   +IH   ++  +  +L V + L++   +     S+  A
Sbjct: 177 PNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAK---CLSVREA 233

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC--- 132
            ++FD +P  D+V +N +   Y ++K   +   LF+++   G+  D+ ++ +++  C   
Sbjct: 234 RMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMEN 293

Query: 133 ------------------------------ACVGAEALEEGKQLHCFAIKLGLNSNLYVC 162
                                         AC  +E L  GK++HC+  +     +L   
Sbjct: 294 GRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTST 353

Query: 163 TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK 222
           T L+ +YA+C D+  +R +F+ +    VV++N +I A A      EAL LF ++    ++
Sbjct: 354 TALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQ 413

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN----TALIDMHAKCGRLDD 278
           P  VT    LS C+    ++ G  I       G D  V+ +    + ++D++++ GRL++
Sbjct: 414 PNSVTFTGVLSGCSHSRLVEEGVQI---FNSMGRDHLVEPDANHYSCVVDIYSRAGRLNE 470

Query: 279 AVSVFDNMSGKDT-QAWSAMIVA 300
           A      M  + T  AW A++ A
Sbjct: 471 AYKFIQGMPMEPTASAWGALLAA 493



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 116/239 (48%), Gaps = 2/239 (0%)

Query: 165 LINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT 224
           LI +     D   AR++F+NI +P   + + +I+A       NEA+ ++  LQER +KP 
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77

Query: 225 DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFD 284
               L+A  +CA+ G     K +H+   + G+   V V  ALI  + KC  ++ A  VFD
Sbjct: 78  MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFD 137

Query: 285 NMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDE 344
           ++  +D  +W+++   Y   G   K + +F EM  + V P+ +T   +L AC+    +  
Sbjct: 138 DLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKS 197

Query: 345 GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
           G    +    ++G+V  +     +V L  +   + EA    D +P +   + W  +L++
Sbjct: 198 G-KEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDV-VSWNGVLTA 254


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 205/544 (37%), Positives = 324/544 (59%), Gaps = 13/544 (2%)

Query: 22  PNALSLLPRCTSFRGL------KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PN  ++     S  GL      K +H   +K     DL V   L+   T+   +  +  A
Sbjct: 203 PNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTK---SGEIAEA 259

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLL-PDDYSFPSLLKACAC 134
              F+ +P+ D++ ++ M   Y++S     A+ LF  +  S ++ P++++F S+L+ACA 
Sbjct: 260 QQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACAS 319

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           +    L  G Q+H   +K+GL+SN++V   L+++YA+C ++E + ++F   +E   V++N
Sbjct: 320 L--VLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWN 377

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
            II  Y +     +AL+LF  +   +++PT+VT  S L + A L +L+ G+ IH    K 
Sbjct: 378 TIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKT 437

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
             +K   V  +LIDM+AKCGR+DDA   FD M  +D  +W+A+I  Y+ HG G +++ +F
Sbjct: 438 MYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLF 497

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
           + M ++   P+++TF+G+L ACS+ GL+D+G  +F SM   YGI P I+HY CMV LLGR
Sbjct: 498 DMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGR 557

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
           +G+ DEA + I E+P + + ++WR LL +C  H NL L K   +R+ E++      +V+L
Sbjct: 558 SGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLL 617

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
           SN+ A A RW++V Y+RK MK + V K PG S +E   VV  F  GD  H     +   L
Sbjct: 618 SNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIFAML 677

Query: 495 DELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
           + L K+ +  GYVPD S+V   D+ED+EKE  L  HSE+LA+ FGL+  P G +IR++KN
Sbjct: 678 EWLYKKTRDAGYVPDCSVVLL-DVEDDEKERLLWMHSERLALAFGLIQIPSGCSIRIIKN 736

Query: 555 LRVC 558
           LR+C
Sbjct: 737 LRIC 740



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 170/331 (51%), Gaps = 5/331 (1%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +E A  LFD +P  + V F T+A+G+SRS    RA  L + L   G   + + F +LLK 
Sbjct: 54  LEDASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKL 113

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
              V  +  +    +H +  KLG  ++ +V T LI+ Y+ C +V+AAR++F+ I    +V
Sbjct: 114 L--VSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMV 171

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+  ++  YA +    ++L LF +++    +P + T+ +AL SC  L +  +GK +H   
Sbjct: 172 SWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCA 231

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            K   D+ + V  AL++++ K G + +A   F+ M   D   WS MI  YA   +  +++
Sbjct: 232 LKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEAL 291

Query: 312 LMFEEMMKAQ-VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370
            +F  M ++  V P+  TF  +L AC+   L++ G N  +S   K G+   +     ++D
Sbjct: 292 ELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLG-NQIHSCVLKVGLDSNVFVSNALMD 350

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
           +  + G ++ + +       +   + W T++
Sbjct: 351 VYAKCGEIENSVKLFTG-STEKNEVAWNTII 380



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 122/269 (45%), Gaps = 20/269 (7%)

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           GK LHC  +K G + +L+    L+N Y     +E A ++F+ +     VS+  +   ++R
Sbjct: 22  GKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSR 81

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW---IHEYIKKYGLDKY 259
           S +   A  L   L     +       + L    LL S+DL      +H Y+ K G    
Sbjct: 82  SHQFQRARRLLLRLFREGYEVNQFVFTTLLK---LLVSMDLADTCLSVHAYVYKLGHQAD 138

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
             V TALID ++ CG +D A  VFD +  KD  +W+ M+  YA +     S+L+F +M  
Sbjct: 139 AFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRI 198

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI-----KHYG-CMVDLLG 373
               P+  T    L +C+       G   F   +  +G    +      + G  +++L  
Sbjct: 199 MGYRPNNFTISAALKSCN-------GLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYT 251

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLS 402
           ++G + EA +F +E+P K   I W  ++S
Sbjct: 252 KSGEIAEAQQFFEEMP-KDDLIPWSLMIS 279


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 202/528 (38%), Positives = 303/528 (57%), Gaps = 12/528 (2%)

Query: 34  FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM 93
            R  +Q+HA ++K     + +VLT L+    +      +  A  +FD +P P  V +  +
Sbjct: 134 LRAGEQLHARSLKLPSHTNPHVLTSLLTLYAR---CGLLHRAQRVFDEMPHPSTVSWTAL 190

Query: 94  ARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL 153
              Y  +     A+ +      +G+ PD ++   +L ACA V    L  G+ +   A + 
Sbjct: 191 ITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVAD--LATGETVWRAAEQE 248

Query: 154 GLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLF 213
           G+  +++V T  ++LY +C ++  AR +F+ + +   V++ A++  YA +  P EAL LF
Sbjct: 249 GIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLF 308

Query: 214 RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK---VNTALIDMH 270
             +Q   ++P    +  ALS+C  LG+LDLG+   + I+    D+++    + TALIDM+
Sbjct: 309 LAMQAEGVRPDCYAVAGALSACTRLGALDLGR---QAIRMVDWDEFLDNPVLGTALIDMY 365

Query: 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           AKCG   +A  VF  M  KD   W+AMI+     G    +  +  +M K+ V  ++ TF+
Sbjct: 366 AKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFI 425

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
           GLL +C+HTGL+ +G  YF++M   Y I P I+HYGC+VDLL RAG L EA++ ID++P+
Sbjct: 426 GLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPM 485

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL 450
            +  ++   LL  C  H N  LA+ V+ ++  L+  + G+YV+LSN+ +  GRWED   L
Sbjct: 486 PANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKL 545

Query: 451 RKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT 510
           R  MK++GV KVP CS +E    V EF  GD  H  S  + K LDEL  E+K +GY P T
Sbjct: 546 RLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTT 605

Query: 511 SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +V   D+EDEEKE  L +HSEKLAI F LL T PG TIRV KNLRVC
Sbjct: 606 EVVMF-DVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVC 652



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 143/282 (50%), Gaps = 3/282 (1%)

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179
           P   +FP  LK+ + +    L  G+QLH  ++KL  ++N +V T+L+ LYA C  +  A+
Sbjct: 115 PSHLTFPIALKSASRL-PHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQ 173

Query: 180 RIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG 239
           R+F+ +  P  VS+ A+ITAY  +    EA+ + R      ++P   T +  L++CA + 
Sbjct: 174 RVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVA 233

Query: 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIV 299
            L  G+ +    ++ G+ + V V TA +D++ KCG +  A  VFD M  KD  AW AM+ 
Sbjct: 234 DLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVG 293

Query: 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359
            YA++G   +++ +F  M    V PD     G L AC+  G +D G      M D    +
Sbjct: 294 GYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAI-RMVDWDEFL 352

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
                   ++D+  + G   EA+    ++  K   I+W  ++
Sbjct: 353 DNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDI-IVWNAMI 393


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 202/528 (38%), Positives = 303/528 (57%), Gaps = 12/528 (2%)

Query: 34  FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM 93
            R  +Q+HA ++K     + +VLT L+    +      +  A  +FD +P P  V +  +
Sbjct: 87  LRAGEQLHARSLKLPSHTNPHVLTSLLTLYAR---CGLLHRAQRVFDEMPHPSTVSWTAL 143

Query: 94  ARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL 153
              Y  +     A+ +      +G+ PD ++   +L ACA V    L  G+ +   A + 
Sbjct: 144 ITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVAD--LATGETVWRAAEQE 201

Query: 154 GLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLF 213
           G+  +++V T  ++LY +C ++  AR +F+ + +   V++ A++  YA +  P EAL LF
Sbjct: 202 GIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLF 261

Query: 214 RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK---VNTALIDMH 270
             +Q   ++P    +  ALS+C  LG+LDLG+   + I+    D+++    + TALIDM+
Sbjct: 262 LAMQAEGVRPDCYAVAGALSACTRLGALDLGR---QAIRMVDWDEFLDNPVLGTALIDMY 318

Query: 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           AKCG   +A  VF  M  KD   W+AMI+     G    +  +  +M K+ V  ++ TF+
Sbjct: 319 AKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFI 378

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
           GLL +C+HTGL+ +G  YF++M   Y I P I+HYGC+VDLL RAG L EA++ ID++P+
Sbjct: 379 GLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPM 438

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL 450
            +  ++   LL  C  H N  LA+ V+ ++  L+  + G+YV+LSN+ +  GRWED   L
Sbjct: 439 PANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKL 498

Query: 451 RKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT 510
           R  MK++GV KVP CS +E    V EF  GD  H  S  + K LDEL  E+K +GY P T
Sbjct: 499 RLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTT 558

Query: 511 SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +V   D+EDEEKE  L +HSEKLAI F LL T PG TIRV KNLRVC
Sbjct: 559 EVVMF-DVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVC 605



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 143/282 (50%), Gaps = 3/282 (1%)

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179
           P   +FP  LK+ + +    L  G+QLH  ++KL  ++N +V T+L+ LYA C  +  A+
Sbjct: 68  PSHLTFPIALKSASRL-PHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQ 126

Query: 180 RIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG 239
           R+F+ +  P  VS+ A+ITAY  +    EA+ + R      ++P   T +  L++CA + 
Sbjct: 127 RVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVA 186

Query: 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIV 299
            L  G+ +    ++ G+ + V V TA +D++ KCG +  A  VFD M  KD  AW AM+ 
Sbjct: 187 DLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVG 246

Query: 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359
            YA++G   +++ +F  M    V PD     G L AC+  G +D G      M D    +
Sbjct: 247 GYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLG-RQAIRMVDWDEFL 305

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
                   ++D+  + G   EA+    ++  K   I+W  ++
Sbjct: 306 DNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDI-IVWNAMI 346


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 193/490 (39%), Positives = 303/490 (61%), Gaps = 10/490 (2%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL--NSGLLPDDYSFPSLLKAC 132
           A   FD IP+P+ V+   MA GY R+     ++ LF  ++  +S  + D+ +      A 
Sbjct: 148 ARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSAS 207

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE--CSDVEAARRIFENISEPCV 190
           A V    +     LH    K+G   N  V  T+++ YA+    D+E AR++F+ + E  V
Sbjct: 208 ARVPDRGVT--ASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDV 264

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQE--RNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
           VS+N++I  YA++    EA+ L+ ++      +K   V + + L +CA  G++  GK IH
Sbjct: 265 VSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIH 324

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
             + + GL++ V V T+++DM++KCGR++ A   F  +  K+  +WSAMI  Y  HG+G 
Sbjct: 325 NQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQ 384

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
           +++ +F EM ++ + P+ ITF+ +L ACSH GL+DEG  ++ +M+ ++GI  G++HYGCM
Sbjct: 385 EALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCM 444

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428
           VDLLGRAG LDEAY  I E+ +K    +W  LLS+C  H N+ LA+  ++R+FELD S+ 
Sbjct: 445 VDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNS 504

Query: 429 GDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYST 488
           G YV+LSN+ A A  W+DV+ +R L+K R + K PG SS E+   +  F+ GD  H    
Sbjct: 505 GYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHI 564

Query: 489 DLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTT 548
           ++   L++L++ ++  GYVP+T  V H D+++EEKE ALR HSEKLA+ F L+N+ P + 
Sbjct: 565 EIYSYLEKLLERMQEAGYVPNTGSVLH-DLDEEEKESALRIHSEKLAVAFALMNSVPRSV 623

Query: 549 IRVVKNLRVC 558
           I ++KNLRVC
Sbjct: 624 IHIIKNLRVC 633


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 199/522 (38%), Positives = 307/522 (58%), Gaps = 7/522 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K I+++     +++D+ V+   +N          +  A  LF+ + + D+V +N +   Y
Sbjct: 227 KFIYSLVSSRVMESDVRVMNSAMNMF---GNAGLLGDARRLFEDMVDRDVVTWNIVITFY 283

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            +++    A+ LF  L   G+  +D +F  +L     +   +L +GK +H    + G + 
Sbjct: 284 VQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSL--TSLAKGKVIHELVKEAGYDR 341

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           ++ V T L++LY  C     A +IF ++    V+++  +  AYA++    EAL LF+E+Q
Sbjct: 342 DVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQ 401

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
               +PT  T+++ L +CA L +L  G+ IH +I + G    + V TALI+M+ KCG++ 
Sbjct: 402 LEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMA 461

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           +A SVF+ M+ +D   W++M+ AYA HG   +++ +F +M       D ++F+ +L A S
Sbjct: 462 EARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALS 521

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP-IKSTPIL 396
           H+G V +G+ YF +M   + I P  + YGC+VDLLGRAGR+ EA   + +L       IL
Sbjct: 522 HSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGIL 581

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
           W TLL +C +HN    AK   E++ E D SH G YV+LSN+ A AG W+ V+ +RKLM+ 
Sbjct: 582 WMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRS 641

Query: 457 RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHG 516
           RGV K PG SSIE+ N V EF  GD  H     +   LD L  E++  GY+PDT ++ H 
Sbjct: 642 RGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILH- 700

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           D+EDE KE  L YHSE+LAI FGL++TPPGT +RV+KNLRVC
Sbjct: 701 DVEDERKEDMLFYHSERLAIAFGLMSTPPGTPLRVIKNLRVC 742



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 125/496 (25%), Positives = 230/496 (46%), Gaps = 32/496 (6%)

Query: 25  LSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           +++L  C S   LK   +IH   ++   + D+ V T LIN   +     S+  A   F R
Sbjct: 110 VAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNK---CGSVRGAWDSFKR 166

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +   D+V +  M     +      A +L+  +   G++P+  +  ++  A        L 
Sbjct: 167 LEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYG--DPHYLS 224

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           EGK ++       + S++ V  + +N++     +  ARR+FE++ +  VV++N +IT Y 
Sbjct: 225 EGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYV 284

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++    EA+ LF  LQ+  +K  D+T +  L+    L SL  GK IHE +K+ G D+ V 
Sbjct: 285 QNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVV 344

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V TAL+ ++ +C     A  +F +M  KD   W+ M VAYA +G   +++ +F+EM    
Sbjct: 345 VATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEG 404

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
             P   T + +L  C+H   + +G    +S   + G    +     ++++ G+ G++ EA
Sbjct: 405 RRPTSATLVAVLDTCAHLAALQKG-RQIHSHIIENGFRMEMVVETALINMYGKCGKMAEA 463

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD-DSHGGDYV----ILSN 436
            R + E   K   ++W ++L + + H   G   + ++   ++  D    D V    +LS 
Sbjct: 464 -RSVFEKMAKRDILVWNSMLGAYAQH---GYYDETLQLFNQMQLDGEKADAVSFVSVLSA 519

Query: 437 LCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDE 496
           L       +   Y   +++D  +   P     E+   V +     G       +Q+A+D 
Sbjct: 520 LSHSGSVTDGYQYFVAMLQDFSITPTP-----ELYGCVVDLLGRAG------RIQEAVDI 568

Query: 497 LVKELKMVGYVPDTSL 512
           +   LK+ G +PD  L
Sbjct: 569 V---LKLSGCLPDGIL 581



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 151/301 (50%), Gaps = 4/301 (1%)

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179
           PD   F +LL+ C+   A+ ++ G+++H      G   N  VC  LI +YA+C  V  A+
Sbjct: 3   PDTAFFVALLQRCS--SAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 60

Query: 180 RIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG 239
           ++FE +    V ++  +I  Y +    + AL +F ++QE ++ PT VT ++ L++CA   
Sbjct: 61  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 120

Query: 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIV 299
           SL  G  IH  I + G +  V V TALI+M+ KCG +  A   F  +  +D  +W+AMI 
Sbjct: 121 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIA 180

Query: 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359
           A   H Q   +  ++  M    V P++IT   +  A      + EG  + YS+     + 
Sbjct: 181 ACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEG-KFIYSLVSSRVME 239

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIER 419
             ++     +++ G AG L +A R  +++ +    + W  +++    + N G A ++  R
Sbjct: 240 SDVRVMNSAMNMFGNAGLLGDARRLFEDM-VDRDVVTWNIVITFYVQNENFGEAVRLFGR 298

Query: 420 I 420
           +
Sbjct: 299 L 299



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/410 (22%), Positives = 191/410 (46%), Gaps = 19/410 (4%)

Query: 20  NTPNALSLLPRCTSFRGLKQIHAVTIKTHL------QNDLNVLTKLINFCTQNPTTSSME 73
           +T   ++LL RC+S + +   H   +  H+      QN+L V   LI    Q     S+ 
Sbjct: 4   DTAFFVALLQRCSSAKNVD--HGRRVHWHVCDRGFEQNNL-VCGHLIQMYAQ---CGSVP 57

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
            A  +F+ +   D+  +  M   Y +     RA+ +F ++    ++P   ++ ++L ACA
Sbjct: 58  EAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACA 117

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
               E+L++G ++H   ++ G   +++V T LIN+Y +C  V  A   F+ +    VVS+
Sbjct: 118 --STESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSW 175

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
            A+I A  +  +   A  L+R +Q   + P  +T+ +  ++      L  GK+I+  +  
Sbjct: 176 TAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSS 235

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
             ++  V+V  + ++M    G L DA  +F++M  +D   W+ +I  Y  +    +++ +
Sbjct: 236 RVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRL 295

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           F  + +  +  ++ITF+ +L   +    + +G    + +  + G    +     ++ L G
Sbjct: 296 FGRLQQDGIKANDITFVLMLNVYTSLTSLAKG-KVIHELVKEAGYDRDVVVATALMSLYG 354

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
           R     +A++   ++  K   I W  +   C ++   G  K+ ++   E+
Sbjct: 355 RCEAPGQAWKIFVDMGSKDV-ITWTVM---CVAYAQNGFRKEALQLFQEM 400



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 101/204 (49%), Gaps = 3/204 (1%)

Query: 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV 280
            KP     ++ L  C+   ++D G+ +H ++   G ++   V   LI M+A+CG + +A 
Sbjct: 1   FKPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 60

Query: 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG 340
            VF+ +  KD  AW+ MI  Y   G   +++ MF +M +  V P ++T++ +L AC+ T 
Sbjct: 61  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 120

Query: 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400
            + +G      +  + G    +     ++++  + G +  A+     L  +   + W  +
Sbjct: 121 SLKDGMEIHGQILQQ-GFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDV-VSWTAM 178

Query: 401 LSSCSSHNNLGLAKQVIERIFELD 424
           +++C  H+   LA+ +  R+ +LD
Sbjct: 179 IAACVQHDQFALARWLYRRM-QLD 201


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 202/544 (37%), Positives = 322/544 (59%), Gaps = 12/544 (2%)

Query: 20  NTPNALSLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N    +S+LP C     +     IH   IK  L+ DL V   LIN   +     ++E A 
Sbjct: 315 NFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAK---FGNLEDAR 371

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
             F ++   D+V +N++   Y ++  P+ A   FV++  +G  PD  +  SL  A     
Sbjct: 372 KAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSL--ASIVAQ 429

Query: 137 AEALEEGKQLHCFAIKLG-LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
           +   +  + +H F ++ G L  ++ +   ++++YA+   +++A ++FE I    V+S+N 
Sbjct: 430 SRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNT 489

Query: 196 IITAYARSSRPNEALSLFRELQE-RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           +IT YA++   +EA+ +++ ++E + + P   T +S L + A +G+L  G  IH  + K 
Sbjct: 490 LITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKT 549

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
            L   V V T LID++ KCGRL DA+S+F  +  + +  W+A+I  +  HG   K++ +F
Sbjct: 550 NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLF 609

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
            EM+   V PD +TF+ LL ACSH+G V+EG  + + +  +YGI P +KHYGCMVDLLGR
Sbjct: 610 GEMLDEGVKPDHVTFVSLLSACSHSGFVEEG-KWCFRLMQEYGIKPSLKHYGCMVDLLGR 668

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
           AG L+ AY FI ++P++    +W  LL +C  H N+ L K   +R+FE+D  + G YV+L
Sbjct: 669 AGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLL 728

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
           SN+ A  G+WE VD +R L ++RG+ K PG S+IEVN  V  F++G+  H    ++ + L
Sbjct: 729 SNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEEL 788

Query: 495 DELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
             L  ++K +GY+PD S V   D+E++EKE  L  HSE+LAI FG+++TPP + IR+ KN
Sbjct: 789 RVLTAKMKSLGYIPDYSFVLQ-DVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKN 847

Query: 555 LRVC 558
           LRVC
Sbjct: 848 LRVC 851



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/393 (29%), Positives = 196/393 (49%), Gaps = 35/393 (8%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K +HA+ +       + + T+L+N          +  +   FD+IP+ D+  +N+M   Y
Sbjct: 136 KCLHALLVVAGKVQSIFISTRLVNLYA---NLGDVSLSRCTFDQIPQKDVYAWNSMISAY 192

Query: 98  SRSKTPIRAIFLFVELL-NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
             +     AI  F +LL  S + PD Y+FP +LKAC       L +G+++HC+A KLG  
Sbjct: 193 VHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG-----TLVDGRKIHCWAFKLGFQ 247

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            N++V  +LI++Y+       AR +F+++    + S+NA+I+   ++    +AL +  E+
Sbjct: 248 WNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEM 307

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           +   +K   VT++S L  C  LG +     IH Y+ K+GL+  + V+ ALI+M+AK G L
Sbjct: 308 RLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNL 367

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           +DA   F  M   D  +W+++I AY  +     +   F +M      PD +T + L    
Sbjct: 368 EDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIV 427

Query: 337 S-----------HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI 385
           +           H  ++  GW     M D   +V G      +VD+  + G LD A++  
Sbjct: 428 AQSRDCKNSRSVHGFIMRRGW----LMED---VVIG----NAVVDMYAKLGLLDSAHKVF 476

Query: 386 DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
           + +P+K   I W TL++  + +   GLA + IE
Sbjct: 477 EIIPVKDV-ISWNTLITGYAQN---GLASEAIE 505


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 191/481 (39%), Positives = 288/481 (59%), Gaps = 3/481 (0%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           LF  + E D + + TM  G  ++     A+ LF ++   G+  D Y+F S+L AC   G 
Sbjct: 226 LFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACG--GL 283

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
            AL+EGK++H   I+ G N N++V + L+++Y +C  V  A  +F+ ++   VVS+ A++
Sbjct: 284 RALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAML 343

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
             Y ++    EA+ +F ++Q   ++P D T+ S +SSCA L SL+ G   H      GL 
Sbjct: 344 VGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLI 403

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
            ++ V+ ALI ++ KCG ++D+  +FD MS +D  +W+A++  YA  G+ +++I +FE M
Sbjct: 404 SFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERM 463

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
           +   + PD +TF+ +L ACS  GLV+ G  YF SM   +GI+P   HY CM+DL GRAGR
Sbjct: 464 LVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGR 523

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437
           L+EA  FI+++P     I W TLLSSC  + N  + K   E + ELD  +   Y++LS++
Sbjct: 524 LEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSI 583

Query: 438 CARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDEL 497
            A  G+W +V  LR+ M+++G  K PG S I+  + V  F + D    +S  +   L++L
Sbjct: 584 YAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEKL 643

Query: 498 VKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRV 557
             ++   GYVPD S V H D+ED EK   L +HSEKLAI FGLL  P G  IRVVKNLRV
Sbjct: 644 NHKMIEEGYVPDASSVLH-DVEDSEKMKMLNHHSEKLAIAFGLLFIPHGLPIRVVKNLRV 702

Query: 558 C 558
           C
Sbjct: 703 C 703



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 125/520 (24%), Positives = 235/520 (45%), Gaps = 102/520 (19%)

Query: 16  KLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           KLC  T N              K++H + IK+    +  +   LIN  ++     ++ +A
Sbjct: 13  KLCCETRNQTQA----------KKLHCLIIKSLTNPETFLYNNLINAYSK---LGNITYA 59

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSK--TPIRAIFLFVELLNSGLLP--DDYSFPSLLKA 131
             +FD++P+P+   +NTM   YS+S   + ++ IF         ++P  D  S+ SL+  
Sbjct: 60  RHVFDKMPQPNSFSWNTMLSAYSKSGDLSTMQEIF--------SIMPNRDGVSWNSLISG 111

Query: 132 CACVGA--EALEE--------------------------------GKQLHCFAIKLGLNS 157
             C G+  EA++                                 G+Q+H   +K G  +
Sbjct: 112 YVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGA 171

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPN---------- 207
            ++V ++L+++YA+   V  A ++F+ + E  VV YN +IT   RS              
Sbjct: 172 YVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMK 231

Query: 208 ---------------------EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW 246
                                EA+ LFR++++  +     T  S L++C  L +L  GK 
Sbjct: 232 ERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKE 291

Query: 247 IHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ 306
           IH  I + G +  V V +AL+DM+ KC  +  A +VF  M+ K+  +W+AM+V Y  +G 
Sbjct: 292 IHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGF 351

Query: 307 GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG 366
             +++ +F +M +  + PD+ T   ++ +C++   ++EG   F+      G++  I    
Sbjct: 352 SEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQ-FHCQALVSGLISFITVSN 410

Query: 367 CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
            ++ L G+ G ++++ +  DE+  +   + W  L+   S +   G A + I+ +FE    
Sbjct: 411 ALITLYGKCGSIEDSNQLFDEMSFRD-EVSWTALV---SGYAQFGKANETID-LFERMLV 465

Query: 427 HG-----GDYVILSNLCARAGRWE-DVDYLRKLMKDRGVL 460
            G       ++ + + C+RAG  E    Y   ++KD G++
Sbjct: 466 QGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGII 505



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 158/286 (55%), Gaps = 12/286 (4%)

Query: 26  SLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDR 81
           S+L  C   R LK+   IH + I++   +++ V + L++ +C       S+ +A  +F R
Sbjct: 275 SVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCK----CRSVRYAEAVFKR 330

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +   ++V +  M  GY ++     A+ +F ++  +G+ PDD++  S++ +CA +   +LE
Sbjct: 331 MANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLA--SLE 388

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           EG Q HC A+  GL S + V   LI LY +C  +E + ++F+ +S    VS+ A+++ YA
Sbjct: 389 EGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYA 448

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEYIKKYGLDKYV 260
           +  + NE + LF  +  + LKP  VT ++ LS+C+  G ++ G ++    +K +G+  + 
Sbjct: 449 QFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFS 508

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHG 305
              T +ID+  + GRL++A +  + M    D+  W+ ++ +   +G
Sbjct: 509 DHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYG 554


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 203/538 (37%), Positives = 318/538 (59%), Gaps = 12/538 (2%)

Query: 26  SLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+LP C     +     IH   IK  L+ +L V   LIN   +     ++  A  +F ++
Sbjct: 278 SILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAK---FGNLGDAQKVFQQM 334

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
              D+V +N++   Y ++  P+ A   F ++  +GL PD  +  SL  A     +   + 
Sbjct: 335 FLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSL--ASIAAQSRDYKN 392

Query: 143 GKQLHCFAIKLG-LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            + +H F ++ G L   + +   ++++YA+   +++A ++F  I    VVS+N +I+ Y 
Sbjct: 393 SRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYT 452

Query: 202 RSSRPNEALSLFRELQE-RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
           ++   +EA+ ++R ++E R +K    T +S L++ A +G+L  G  IH ++ K  L   V
Sbjct: 453 QNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDV 512

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            V T LID++ KCGRL DA+ +F  +  + +  W+A+I  +  HG G K++ +F EM   
Sbjct: 513 FVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDE 572

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
            V PD +TF+ LL ACSH+GLVDEG  +F+ +  +YGI P +KHYGCMVDLLGRAG L+ 
Sbjct: 573 GVKPDHVTFISLLSACSHSGLVDEG-KWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEM 631

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           AY FI ++P+     +W  LL +C  H N+ L K   +R+FE+D  + G YV+LSN+ A 
Sbjct: 632 AYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYAN 691

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
            G+WE VD +R L ++RG+ K PG SSIEVN  V  F++G+  H    ++   L  L  +
Sbjct: 692 VGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAELRILTAK 751

Query: 501 LKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +K +GY+PD S V   D+E++EKE  L  HSE+LAI FG+++TPP + IR+ KNLRVC
Sbjct: 752 MKSLGYIPDYSFVLQ-DVEEDEKEHILTSHSERLAIAFGIISTPPKSAIRIFKNLRVC 808



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 198/405 (48%), Gaps = 35/405 (8%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP 85
           SL   CT     K++HA+ + +       +  +L+N      +   +  +   FD+I   
Sbjct: 81  SLFDSCTKTLLAKRLHALLVVSGKIQSNFISIRLVNLYA---SLGDVSLSRGTFDQIQRK 137

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELL-NSGLLPDDYSFPSLLKACACVGAEALEEGK 144
           D+  +N+M   Y R+     AI  F +LL  +    D Y+FP +LKAC     + L +G+
Sbjct: 138 DVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKAC-----QTLVDGR 192

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           ++HC+  KLG   +++V  +LI++Y+    V  AR +F+++    + S+NA+I+   ++ 
Sbjct: 193 KIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNG 252

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
              +AL +  E++   +    VT+ S L  CA LG +     IH Y+ K+GL+  + V+ 
Sbjct: 253 NAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSN 312

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
           ALI+M+AK G L DA  VF  M  +D  +W+++I AY  +     +   F +M    + P
Sbjct: 313 ALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEP 372

Query: 325 DEITFLGLLYACS-----------HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           D +T + L    +           H  ++  GW           ++  +     ++D+  
Sbjct: 373 DLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGW-----------LMEAVVIGNAVMDMYA 421

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
           + G +D A++  + +P+K   + W TL+S  + +   GLA + IE
Sbjct: 422 KLGVIDSAHKVFNLIPVKDV-VSWNTLISGYTQN---GLASEAIE 462


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 188/538 (34%), Positives = 323/538 (60%), Gaps = 13/538 (2%)

Query: 26  SLLPRCT---SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  CT   SFR  +Q+H++ ++  L++D  V   L++   ++    S+ +A  +F+R+
Sbjct: 260 SMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRM 319

Query: 83  PEPDIVLFNTMARGY-SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           P+ +++ +  +  GY  R     + + LF ++LN G+ P+  ++ S+LKACA +G +  +
Sbjct: 320 PKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQ--D 377

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G+Q+H   +K  L     V   L+++YAE   +E AR  F+ + E  +VS++  +    
Sbjct: 378 SGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDGDG 437

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           RS+   +      +++   L  +  T  S +S+ A +G L  G+ +H    K G      
Sbjct: 438 RSNTYQD-----YQIERMELGISTFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRA 492

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           +  +L+ M+++CG L DA  VFD M+  +  +W++MI   A HG   +++ +F +M+ A 
Sbjct: 493 IGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDMIAAG 552

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           V P+++T++ +L ACSH GLV EG  +F  M+  +G++P ++HY CMVDLLGR+G +++A
Sbjct: 553 VKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDA 612

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
             FI+E+P +   ++W+TLL +C +HNN+ + +     + +L+      YV+LSNL A A
Sbjct: 613 LDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYVLLSNLYAEA 672

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           G W+ V  +R LM+D+ ++K  G S + V+N + EF +GD  H  + ++   L+ L++E+
Sbjct: 673 GLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFRAGDTSHPQAEEIYTKLETLIREI 732

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTT-IRVVKNLRVC 558
           K++GYVPDTS+V H DM DE KE+ L  HSEK+A+ FGL++    T  IR+ KNLRVC
Sbjct: 733 KVMGYVPDTSVVLH-DMSDELKELCLLQHSEKIAVAFGLISCTSATKPIRIFKNLRVC 789



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/358 (29%), Positives = 183/358 (51%), Gaps = 14/358 (3%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP--DIVLFNTMARG 96
           Q H +   + L+ D  V   L+   ++    S++  A  +FD +P    D+V +  MA  
Sbjct: 70  QGHLLRTGSLLETDAVVANSLLTLYSK---CSAVAAARSVFDGMPVGLRDLVSWTAMASC 126

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL- 155
            SR+     A+ LF E L  GLLP+ ++  +  +AC       L  G  L     KLG  
Sbjct: 127 LSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLG-LVFKLGFW 185

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
            +++ V   LI+++A+  D+ A RR+F+ + E  VV +  +IT YA+S   +EA+ LF +
Sbjct: 186 GTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLD 245

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC-- 273
           + E   +P   T+ S LS+C  LGS  LG+ +H    + GL+    V+  L+DM+AK   
Sbjct: 246 MLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHN 305

Query: 274 -GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG-QGHKSILMFEEMMKAQVSPDEITFLG 331
              L +A  VF+ M   +  AW+A++  Y   G Q ++ +++F +M+   + P+ IT+  
Sbjct: 306 GQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSS 365

Query: 332 LLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388
           +L AC++ G  D G   + + ++     +  + +   +V +   +G ++EA    D+L
Sbjct: 366 MLKACANLGDQDSGRQIHTHCVKSNLADLNVVGN--ALVSMYAESGSIEEARHAFDQL 421


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 202/544 (37%), Positives = 322/544 (59%), Gaps = 12/544 (2%)

Query: 20  NTPNALSLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N    +S+LP C     +     IH   IK  L+ DL V   LIN   +     ++E A 
Sbjct: 315 NFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAK---FGNLEDAR 371

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
             F ++   D+V +N++   Y ++  P+ A   FV++  +G  PD  +  SL  A     
Sbjct: 372 KAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSL--ASIVAQ 429

Query: 137 AEALEEGKQLHCFAIKLG-LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
           +   +  + +H F ++ G L  ++ +   ++++YA+   +++A ++FE I    V+S+N 
Sbjct: 430 SRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNT 489

Query: 196 IITAYARSSRPNEALSLFRELQE-RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           +IT YA++   +EA+ +++ ++E + + P   T +S L + A +G+L  G  IH  + K 
Sbjct: 490 LITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKT 549

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
            L   V V T LID++ KCGRL DA+S+F  +  + +  W+A+I  +  HG   K++ +F
Sbjct: 550 NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLF 609

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
            EM+   V PD +TF+ LL ACSH+G V+EG  + + +  +YGI P +KHYGCMVDLLGR
Sbjct: 610 GEMLDEGVKPDHVTFVSLLSACSHSGFVEEG-KWCFRLMQEYGIKPSLKHYGCMVDLLGR 668

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
           AG L+ AY FI ++P++    +W  LL +C  H N+ L K   +R+FE+D  + G YV+L
Sbjct: 669 AGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLL 728

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
           SN+ A  G+WE VD +R L ++RG+ K PG S+IEVN  V  F++G+  H    ++ + L
Sbjct: 729 SNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEEL 788

Query: 495 DELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
             L  ++K +GY+PD S V   D+E++EKE  L  HSE+LAI FG+++TPP + IR+ KN
Sbjct: 789 RVLTAKMKSLGYIPDYSFVLQ-DVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKN 847

Query: 555 LRVC 558
           LRVC
Sbjct: 848 LRVC 851



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/393 (28%), Positives = 195/393 (49%), Gaps = 35/393 (8%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K +HA+ +       + + T+L+N          +  +   FD+IP+ D+  +N+M   Y
Sbjct: 136 KCLHALLVVAGKVQSIFISTRLVNLYA---NLGDVSLSRCTFDQIPQKDVYTWNSMISAY 192

Query: 98  SRSKTPIRAIFLFVELL-NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
             +     AI  F +LL  S + PD Y+FP +LKAC       L +G+++HC+A KLG  
Sbjct: 193 VHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG-----TLVDGRRIHCWAFKLGFQ 247

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            N++V  +LI++Y+       AR +F+++    + S+NA+I+   ++    +AL +  E+
Sbjct: 248 WNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEM 307

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           +   +K   VT++S L  C  LG +     IH Y+ K+GL+  + V+ ALI+M+AK G L
Sbjct: 308 RLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNL 367

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           +DA   F  M   D  +W+++I AY  +     +   F +M      PD +T + L    
Sbjct: 368 EDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIV 427

Query: 337 S-----------HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI 385
           +           H  ++  GW     M D   +V G      +VD+  + G LD A++  
Sbjct: 428 AQSRDCKNSRSVHGFIMRRGW----LMED---VVIG----NAVVDMYAKLGLLDSAHKVF 476

Query: 386 DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
           + + +K   I W TL++  + +   GLA + IE
Sbjct: 477 EIILVKDV-ISWNTLITGYAQN---GLASEAIE 505


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 206/546 (37%), Positives = 319/546 (58%), Gaps = 9/546 (1%)

Query: 13  PPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSM 72
           P P   T+   A   LP     +G   IH   IKT    + +V   L++   +      +
Sbjct: 261 PNPFALTSVLKAAVCLPSVVLGKG---IHGCAIKTLNDTEPHVGGALLDMYAK---CGDI 314

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
           + A L F+ IP  D++L + M   Y++S    +A  LF+ L+ S +LP++YS  S+L+AC
Sbjct: 315 KDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQAC 374

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
                  L+ GKQ+H  AIK+G  S+L+V   L++ YA+C+D++++ +IF ++ +   VS
Sbjct: 375 --TNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVS 432

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +N I+  +++S    EALS+F E+Q   +  T VT  S L +CA   S+     IH  I+
Sbjct: 433 WNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIE 492

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           K   +    +  +LID +AKCG + DA+ VF ++  +D  +W+A+I  YA HGQ   ++ 
Sbjct: 493 KSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALE 552

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           +F+ M K+ V  ++ITF+ LL  CS TGLV+ G + F SMR  +GI P ++HY C+V LL
Sbjct: 553 LFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLL 612

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432
           GRAGRL++A +FI ++P   + ++WR LLSSC  H N+ L +   E+I E++      YV
Sbjct: 613 GRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYV 672

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
           +LSN+ A AG  + V  LRK M++ GV KVPG S +E+   +  F  G   H     +  
Sbjct: 673 LLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINA 732

Query: 493 ALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVV 552
            L+ L  +    GY+PD ++V H D++ E+K   L  HSE+LA+ +GL+ TPPG  IR++
Sbjct: 733 MLEWLNLKTSREGYIPDINVVLH-DVDKEQKTRMLWVHSERLALAYGLVMTPPGHPIRIL 791

Query: 553 KNLRVC 558
           KNLR C
Sbjct: 792 KNLRSC 797



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 205/404 (50%), Gaps = 8/404 (1%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           +H+   K    ++  V + LI+  +     S  EH   +F+ I   D V++  M   YS 
Sbjct: 184 VHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEH---VFNGIVRKDAVVWTAMVSCYSE 240

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
           +  P  A  +F ++  SG  P+ ++  S+LKA  C+ +  L  GK +H  AIK   ++  
Sbjct: 241 NDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVL--GKGIHGCAIKTLNDTEP 298

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
           +V   L+++YA+C D++ AR  FE I    V+  + +I+ YA+S++  +A  LF  L   
Sbjct: 299 HVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRS 358

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
           ++ P + ++ S L +C  +  LD GK IH +  K G +  + V  AL+D +AKC  +D +
Sbjct: 359 SVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSS 418

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
           + +F ++   +  +W+ ++V ++  G G +++ +F EM  AQ+   ++T+  +L AC+ T
Sbjct: 419 LKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACAST 478

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRT 399
             +        S+ +K            ++D   + G + +A +    L ++   I W  
Sbjct: 479 ASIRHAGQIHCSI-EKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHL-MERDIISWNA 536

Query: 400 LLSSCSSHNNLGLAKQVIERIFELD-DSHGGDYVILSNLCARAG 442
           ++S  + H     A ++ +R+ + + +S+   +V L ++C+  G
Sbjct: 537 IISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTG 580



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 162/349 (46%), Gaps = 7/349 (2%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  LFDR+PE ++V F T+ + +++      A  LF  L   G   + +   ++LK    
Sbjct: 115 ARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIA 174

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           + A  L  G  +H  A KLG + N +V + LI+ Y+ CS V  A  +F  I     V + 
Sbjct: 175 MDAAGLAGG--VHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWT 232

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           A+++ Y+ +  P  A  +F +++    KP    + S L +   L S+ LGK IH    K 
Sbjct: 233 AMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKT 292

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
             D    V  AL+DM+AKCG + DA   F+ +   D    S MI  YA   Q  ++  +F
Sbjct: 293 LNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELF 352

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
             +M++ V P+E +   +L AC++   +D G    ++   K G    +     ++D   +
Sbjct: 353 LRLMRSSVLPNEYSLSSVLQACTNMVQLDFG-KQIHNHAIKIGHESDLFVGNALMDFYAK 411

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
              +D + +    L   +  + W T++   S     GL ++ +    E+
Sbjct: 412 CNDMDSSLKIFSSLR-DANEVSWNTIVVGFSQS---GLGEEALSVFCEM 456



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 112/248 (45%), Gaps = 11/248 (4%)

Query: 95  RGYSRSKTPIRAIFLFVELLNSGLLP-----DDYSFPSLLKACACVGAEALEEGKQLHCF 149
           RG++     ++  +L  EL +  +LP     D ++    L+ C   G      G+ +H  
Sbjct: 29  RGFAAYAAALQ--WLEDELTSLAILPSVPGVDSFACARQLQGCIARGDA--RGGRAVHGH 84

Query: 150 AIKLGLNS--NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPN 207
            ++ G     +L+    L+N+Y +   + +ARR+F+ + E  +VS+  ++ A+A+     
Sbjct: 85  VVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFE 144

Query: 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267
            A +LFR L+    +     + + L     + +  L   +H    K G D    V + LI
Sbjct: 145 AAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLI 204

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
           D ++ C  + DA  VF+ +  KD   W+AM+  Y+ +     +  +F +M  +   P+  
Sbjct: 205 DAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPF 264

Query: 328 TFLGLLYA 335
               +L A
Sbjct: 265 ALTSVLKA 272


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 190/488 (38%), Positives = 291/488 (59%), Gaps = 4/488 (0%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS-GLLPDDYSFPSLLK 130
           ++ A  LFD++PE D   +  M  GY R   P  A+ LF  +  S     + ++  S L 
Sbjct: 152 LQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALA 211

Query: 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV 190
           A A V    L  GK++H + ++ GL+S+  V + L ++Y +C  +E AR IF+ + +  +
Sbjct: 212 AAAAV--PCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDI 269

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY 250
           V++ A+I  Y +  R  E   LF +L    ++P + T    L++CA   S +LGK +H Y
Sbjct: 270 VTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGY 329

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310
           + + G D +    +AL+ M++KCG +  A  VF      D  +W+++I  YA +GQ  ++
Sbjct: 330 MTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEA 389

Query: 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370
           I  FE ++K+   PD ITF+G+L AC+H GLVD+G +YF+S++++YG+     HY C++D
Sbjct: 390 IRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIID 449

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430
           LL R+G+ DEA   I ++ +K    LW +LL  C  H NL LA++  E +FE++  +   
Sbjct: 450 LLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPAT 509

Query: 431 YVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDL 490
           YV L+N+ A AG W +V  +RK M DRGV+K PG S I +   V  F  GD  H  S ++
Sbjct: 510 YVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEI 569

Query: 491 QKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIR 550
            + L +L K +K  G+VPDT+ V H D+EDE+KE  L YHSEKLA+ FG+++TP GT I+
Sbjct: 570 NEFLGKLSKRMKEEGFVPDTNFVLH-DVEDEQKEQNLSYHSEKLAVAFGIISTPEGTPIK 628

Query: 551 VVKNLRVC 558
           V KNLR C
Sbjct: 629 VFKNLRTC 636



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 148/270 (54%), Gaps = 7/270 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K+IH   ++T L +D  V + L +   +     S+E A  +FD++ + DIV +  M   Y
Sbjct: 223 KEIHGYIMRTGLDSDEVVWSALSDMYGK---CGSIEEARHIFDKMVDRDIVTWTAMIDRY 279

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            +         LF +LL SG+ P++++F  +L ACA   +E L  GK++H +  ++G + 
Sbjct: 280 FQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEEL--GKKVHGYMTRVGFDP 337

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
             +  + L+++Y++C ++ +A R+F+   +P + S+ ++I  YA++ +P+EA+  F  L 
Sbjct: 338 FSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLV 397

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           +   +P  +T +  LS+CA  G +D G  + H   ++YGL         +ID+ A+ G+ 
Sbjct: 398 KSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQF 457

Query: 277 DDAVSVFDNMSGK-DTQAWSAMIVAYATHG 305
           D+A ++   MS K D   W++++     HG
Sbjct: 458 DEAENIISKMSMKPDKFLWASLLGGCRIHG 487



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 173/365 (47%), Gaps = 44/365 (12%)

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
           +C+ +  L++GK++H      G    L++   L+ +YA+C  +  ++++F+ + E  + S
Sbjct: 79  SCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCS 138

Query: 193 YNAIITAYA-------------------------------RSSRPNEALSLFRELQER-N 220
           +N +I+ YA                               R  RPNEAL LFR ++   N
Sbjct: 139 WNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDN 198

Query: 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV 280
            K    T+ SAL++ A +  L +GK IH YI + GLD    V +AL DM+ KCG +++A 
Sbjct: 199 SKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEAR 258

Query: 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG 340
            +FD M  +D   W+AMI  Y   G+  +   +F +++++ + P+E TF G+L AC++  
Sbjct: 259 HIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQT 318

Query: 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400
             + G    +    + G  P       +V +  + G +  A R   E P +     W +L
Sbjct: 319 SEELG-KKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETP-QPDLFSWTSL 376

Query: 401 LSSCSSHNNLGLAKQVIERIFELDDSHGGD-----YVILSNLCARAGRWED-VDYLRKLM 454
           ++  + +   G   + I R FEL    G       +V + + CA AG  +  +DY   + 
Sbjct: 377 IAGYAQN---GQPDEAI-RYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIK 432

Query: 455 KDRGV 459
           +  G+
Sbjct: 433 EQYGL 437



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 4/125 (3%)

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           ++  I    + +R  EAL +  ++     KP+     + + SC     L  GK +H++IK
Sbjct: 42  FDEAIHILCQQNRLKEALQILHQID----KPSASVYSTLIQSCIKSRLLQQGKKVHQHIK 97

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
             G    + +   L++M+AKC  L D+  +FD M  +D  +W+ +I  YA  G   ++  
Sbjct: 98  LSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKS 157

Query: 313 MFEEM 317
           +F++M
Sbjct: 158 LFDKM 162


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 210/591 (35%), Positives = 323/591 (54%), Gaps = 65/591 (10%)

Query: 31  CTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLF 90
           C + R L QIH   IK+ +  D   + KLI  C  +  + ++ +A  L    PEPD  +F
Sbjct: 182 CKNLRALTQIHGFFIKSGVDTDSYFIGKLILHCAIS-ISDALPYARRLLLCFPEPDAFMF 240

Query: 91  NTMARGYSRSKTPIRAIFLFVELLNSGLL-PDDYSFPSLLKACACVGA---------EAL 140
           NT+ RGYS S  P  ++ +FVE++  G + PD +SF  ++KA A   +         +AL
Sbjct: 241 NTLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQAL 300

Query: 141 EEGKQLHCFAIK---------------------------LGLNSNLYVC----------- 162
           + G   H F                              +  N+ +  C           
Sbjct: 301 KHGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGARE 360

Query: 163 -------------TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEA 209
                          ++  Y +  ++E A+RIF  +     VS++ +I  ++ +   NE+
Sbjct: 361 IFDKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNES 420

Query: 210 LSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDM 269
            S FREL    ++P +V++   LS+C+  G+ + GK +H +++K G    V VN ALIDM
Sbjct: 421 FSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDM 480

Query: 270 HAKCGRLDDAVSVFDNMSGKDT-QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT 328
           +++CG +  A  VF+ M  K +  +W++MI   A HG G ++I +F EM ++ V PDEI+
Sbjct: 481 YSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEIS 540

Query: 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388
           F+ LLYACSH GL+ EG  YF  M+  Y I P ++HYGCMVDL GR+G+L +AY FI ++
Sbjct: 541 FISLLYACSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQM 600

Query: 389 PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVD 448
           PI  T I+WRTLL +CSSH N+ LA+QV +R+ ELD ++ GD V+LSN+ A AG+W+DV 
Sbjct: 601 PIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAGKWKDVA 660

Query: 449 YLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK-MVGYV 507
            +RK M  + + K+   S +EV   + +F + +       +  + L E++  L+   GY 
Sbjct: 661 SIRKSMIVQRIKKITAWSLVEVGKTMYKFTACEKKKEIDIEAHEKLKEIILRLRDEAGYA 720

Query: 508 PDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           P+ +   + D+E+EEKE  +  HSEKLA+ F L   P G  IR+VKNLR+C
Sbjct: 721 PEVASALY-DVEEEEKEDQVSKHSEKLALAFALARLPKGANIRIVKNLRIC 770


>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
 gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 195/536 (36%), Positives = 314/536 (58%), Gaps = 5/536 (0%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTK-LINFCTQNPTTSSMEHAHLLFDRIP 83
           L LL RC +    KQ+HA  IK  L    +     ++  C  +   +SM +A  +F  I 
Sbjct: 34  LYLLKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASIFRGID 93

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
           +P    FNTM RGY    +   A+  + E++  G  PD++++P LLKAC  +  +++ EG
Sbjct: 94  DPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRL--KSIREG 151

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
           KQ+H    KLGL ++++V  +LIN+Y  C ++E +  +FE +      S++++++A A  
Sbjct: 152 KQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGM 211

Query: 204 SRPNEALSLFREL-QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
              +E L LFR +  E NLK  +  M+SAL +CA  G+L+LG  IH ++ +   +  + V
Sbjct: 212 GMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIV 271

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
            T+L+DM+ KCG LD A+ +F  M  ++   +SAMI   A HG+G  ++ MF +M+K  +
Sbjct: 272 QTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGL 331

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            PD + ++ +L ACSH+GLV EG   F  M  +  + P  +HYGC+VDLLGRAG L+EA 
Sbjct: 332 EPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEAL 391

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
             I  +PI+   ++WRT LS C    N+ L +   + + +L   + GDY+++SNL ++  
Sbjct: 392 ETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQ 451

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
            W+DV   R  +  +G+ + PG S +E+      F S D  H    ++ K L ++  +LK
Sbjct: 452 MWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLK 511

Query: 503 MVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             GY PD + +   ++++EEK+  L+ HS+K+AI FGLL TPPG+ I++ +NLR+C
Sbjct: 512 FEGYSPDLTQILL-NVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMC 566



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 127/267 (47%), Gaps = 7/267 (2%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           P  L    R  S R  KQIH    K  L+ D+ V   LIN   +      ME +  +F++
Sbjct: 136 PCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGR---CGEMELSSAVFEK 192

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN-SGLLPDDYSFPSLLKACACVGAEAL 140
           +       +++M    +        + LF  + + + L  ++    S L ACA  G  AL
Sbjct: 193 LESKTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTG--AL 250

Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY 200
             G  +H F ++     N+ V T+L+++Y +C  ++ A  IF+ + +   ++Y+A+I+  
Sbjct: 251 NLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGL 310

Query: 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH-EYIKKYGLDKY 259
           A       AL +F ++ +  L+P  V  +S L++C+  G +  G+ +  E +K+  ++  
Sbjct: 311 ALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPT 370

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNM 286
            +    L+D+  + G L++A+    ++
Sbjct: 371 AEHYGCLVDLLGRAGLLEEALETIQSI 397


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 203/524 (38%), Positives = 306/524 (58%), Gaps = 9/524 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +++HA+ +   L+ D+ V   +++   +      +E A ++FDR+   D+  +NTM  G+
Sbjct: 144 RKVHALVVVGGLEEDVYVGNSILSMYFK---FGDVEAARVVFDRMLVRDLTSWNTMMSGF 200

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            ++     A  +F ++   G + D  +  +LL AC  V    L+ GK++H + ++ G + 
Sbjct: 201 VKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDV--MDLKVGKEIHGYVVRNGESG 258

Query: 158 ---NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
              N ++  ++I++Y  C  V  AR++FE +    VVS+N++I+ Y +     +AL LF 
Sbjct: 259 RVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFG 318

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
            +      P +VT++S L++C  + +L LG  +  Y+ K G    V V TALI M+A CG
Sbjct: 319 RMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCG 378

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
            L  A  VFD M  K+  A + M+  +  HG+G ++I +F EM+   V+PDE  F  +L 
Sbjct: 379 SLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLS 438

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           ACSH+GLVDEG   FY M   Y + P   HY C+VDLLGRAG LDEAY  I+ + +K   
Sbjct: 439 ACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNE 498

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454
            +W  LLS+C  H N+ LA    +++FEL+      YV LSN+ A   RWEDV+ +R L+
Sbjct: 499 DVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALV 558

Query: 455 KDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVH 514
             R + K P  S +E+N +V +FF GD  H  S D+   L +L ++LK  GY PDTSLV 
Sbjct: 559 AKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVL 618

Query: 515 HGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           + D+E+E KE  L  HSE+LA+ F L+NT PGTTIR+ KNLRVC
Sbjct: 619 Y-DVEEEIKEKMLWDHSERLALAFALINTGPGTTIRITKNLRVC 661



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 197/395 (49%), Gaps = 15/395 (3%)

Query: 5   PSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHA-VTIKTHLQNDLNVLTKLINFC 63
           P P  T +     C      L  L    S     Q+HA VT    L+ +  + TKL    
Sbjct: 12  PKPSSTSTFDSLQCGTL---LQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKL---A 65

Query: 64  TQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDY 123
                   M +A  +FD+I   +  L+N+M RGY+ + +P RA+FL++++L+ G  PD++
Sbjct: 66  ACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNF 125

Query: 124 SFPSLLKACACVGAEALEE-GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF 182
           ++P +LKAC   G   L E G+++H   +  GL  ++YV  +++++Y +  DVEAAR +F
Sbjct: 126 TYPFVLKAC---GDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVF 182

Query: 183 ENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242
           + +    + S+N +++ + ++     A  +F +++         T+L+ LS+C  +  L 
Sbjct: 183 DRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLK 242

Query: 243 LGKWIHEYIKKYGLDKYV---KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIV 299
           +GK IH Y+ + G    V    +  ++IDM+  C  +  A  +F+ +  KD  +W+++I 
Sbjct: 243 VGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLIS 302

Query: 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359
            Y   G   +++ +F  M+     PDE+T + +L AC+    +  G     S   K G V
Sbjct: 303 GYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGAT-VQSYVVKRGYV 361

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
             +     ++ +    G L  A R  DE+P K+ P
Sbjct: 362 VNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLP 396


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 197/511 (38%), Positives = 302/511 (59%), Gaps = 7/511 (1%)

Query: 49  LQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIF 108
           +++D+ V+   +N          +  A  LF+ + + D+V +N +   Y +++    A+ 
Sbjct: 237 MESDVRVMNSAVNMF---GNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVR 293

Query: 109 LFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINL 168
           LF  L   G+  +D +F  +L     +   +L +GK +H    + G + +  V T L++L
Sbjct: 294 LFGRLQQDGVKANDITFVLMLNVYTSL--TSLAKGKVIHELVKEAGYDRDAVVATALMSL 351

Query: 169 YAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTM 228
           Y  C     A +IF ++    V+++  +  AYA++    EAL LF+E+Q    +PT  T+
Sbjct: 352 YGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATL 411

Query: 229 LSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG 288
           ++ L +CA L +L  G+ IH +I +      + V TALI+M+ KCG++ +A+SVF+ M+ 
Sbjct: 412 VAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAK 471

Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNY 348
           +D   W++M+ AYA HG   +++ +F +M    V  D ++F+ +L A SH+G V +G+ Y
Sbjct: 472 RDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQY 531

Query: 349 FYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP-IKSTPILWRTLLSSCSSH 407
           F +M   + I P  + YGC+VDLLGRAGR+ EA   + +L       ILW TLL +C +H
Sbjct: 532 FVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTH 591

Query: 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSS 467
           N    AK   E++ E D SH G YV+LSN+ A AG W+ V+ +RKLM+ RGV K PG SS
Sbjct: 592 NKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSS 651

Query: 468 IEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIAL 527
           IE+ N V EF  GD  H     +   LD L  E++  GY+PDT ++ H D+EDE KE  L
Sbjct: 652 IEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILH-DVEDERKEDML 710

Query: 528 RYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            YHSE+LAI FGL++TPPGT +RV+KNLRVC
Sbjct: 711 FYHSERLAIAFGLISTPPGTPLRVIKNLRVC 741



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 121/496 (24%), Positives = 233/496 (46%), Gaps = 32/496 (6%)

Query: 25  LSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           +++L  C S   LK   +IH   ++   + D+ V T LIN   +     S+  A   F R
Sbjct: 109 VAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNK---CGSVRGAWDSFKR 165

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +   D+V +  M     +      A +L+  +   G++P+  +  ++  A        L 
Sbjct: 166 LEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYG--DPNYLS 223

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           EGK ++       + S++ V  + +N++     +  ARR+FE++ +  VV++N +IT Y 
Sbjct: 224 EGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYV 283

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++    EA+ LF  LQ+  +K  D+T +  L+    L SL  GK IHE +K+ G D+   
Sbjct: 284 QNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAV 343

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V TAL+ ++ +C     A  +F +M  KD   W+ M VAYA +G   +++ +F+EM    
Sbjct: 344 VATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEG 403

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
             P   T + +L  C+H   + +G   + + + +++ +   ++    ++++ G+ G++ E
Sbjct: 404 RRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVE--TALINMYGKCGKMAE 461

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV----ILSN 436
           A    +++  K   ++W ++L + + H       Q+  ++ +LD     D V    +LS 
Sbjct: 462 AMSVFEKMA-KRDILVWNSMLGAYAQHGYYDETLQLFNQM-QLDGVK-ADAVSFVSVLSA 518

Query: 437 LCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDE 496
           L       +   Y   +++D  +   P     E+   V +     G       +Q+A+D 
Sbjct: 519 LSHSGSVTDGYQYFVAMLQDFSITPTP-----ELYGCVVDLLGRAG------RIQEAVDI 567

Query: 497 LVKELKMVGYVPDTSL 512
           +   LK+ G +PD  L
Sbjct: 568 V---LKLSGCLPDGIL 580



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 150/301 (49%), Gaps = 4/301 (1%)

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179
           PD   F +LL+ C+   A+ ++ G+++H      G   N  VC  LI +YA+C  V  A+
Sbjct: 2   PDTAFFVALLQRCS--SAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 59

Query: 180 RIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG 239
           ++FE +    V ++  +I  Y +    + AL +F ++QE ++ PT VT ++ L++CA   
Sbjct: 60  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 119

Query: 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIV 299
           SL  G  IH  I + G +  V V TALI+M+ KCG +  A   F  +  +D  +W+AMI 
Sbjct: 120 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIA 179

Query: 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359
           A   H Q   +  ++  M    V P++IT   +  A      + EG  + Y +     + 
Sbjct: 180 ACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEG-KFVYGLVSSGVME 238

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIER 419
             ++     V++ G AG L +A R  +++ +    + W  +++    + N G A ++  R
Sbjct: 239 SDVRVMNSAVNMFGNAGLLGDARRLFEDM-VDRDVVTWNIVITLYVQNENFGEAVRLFGR 297

Query: 420 I 420
           +
Sbjct: 298 L 298



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/408 (22%), Positives = 192/408 (47%), Gaps = 15/408 (3%)

Query: 20  NTPNALSLLPRCTSFRGL---KQIH-AVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           +T   ++LL RC+S + +   +++H  V  +   QN+L V   LI    Q     S+  A
Sbjct: 3   DTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNL-VCGHLIQMYAQ---CGSVPEA 58

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
             +F+ +   D+  +  M   Y +     RA+ +F ++    ++P   ++ ++L ACA  
Sbjct: 59  QQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACA-- 116

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
             E+L++G ++H   ++ G   +++V T LIN+Y +C  V  A   F+ +    VVS+ A
Sbjct: 117 STESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTA 176

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +I A  +  +   A  L+R +Q   + P  +T+ +  ++      L  GK+++  +    
Sbjct: 177 MIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGV 236

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
           ++  V+V  + ++M    G L DA  +F++M  +D   W+ +I  Y  +    +++ +F 
Sbjct: 237 MESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFG 296

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
            + +  V  ++ITF+ +L   +    + +G    + +  + G          ++ L GR 
Sbjct: 297 RLQQDGVKANDITFVLMLNVYTSLTSLAKG-KVIHELVKEAGYDRDAVVATALMSLYGRC 355

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
               +A++   ++  K   I W  +   C ++   G  K+ ++   E+
Sbjct: 356 EAPGQAWKIFVDMGSKDV-ITWTVM---CVAYAQNGFRKEALQLFQEM 399



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 102/203 (50%), Gaps = 3/203 (1%)

Query: 222 KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVS 281
           KP     ++ L  C+   ++D G+ +H +++  G ++   V   LI M+A+CG + +A  
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 282 VFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341
           VF+ +  KD  AW+ MI  Y   G   +++ MF +M +  V P ++T++ +L AC+ T  
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
           + +G      +  + G    +     ++++  + G +  A+     L  +   + W  ++
Sbjct: 121 LKDGMEIHGQILQQ-GFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDV-VSWTAMI 178

Query: 402 SSCSSHNNLGLAKQVIERIFELD 424
           ++C  H+   LA+ +  R+ +LD
Sbjct: 179 AACVQHDQFALARWLYRRM-QLD 200


>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 212/573 (36%), Positives = 326/573 (56%), Gaps = 35/573 (6%)

Query: 6   SPPITQSPPPKLCT---NTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINF 62
           SP I  +  P   T   +    LSL   C+    LKQ+HA T++T   ++   L      
Sbjct: 11  SPHIQPANSPSASTAGNHHRRILSLAETCSDMSQLKQLHAFTLRTTYPDEPATLFLYGKI 70

Query: 63  CTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKT-PIRAIFLFVELLNSG-LLP 120
              + + S + +A  +FD I      ++NT+ R  +   +    A  L+ ++L  G   P
Sbjct: 71  LQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESAP 130

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           D ++FP +LKACA +    L EGKQ+HC  +K G + ++YV   LI+ Y  C  ++ AR+
Sbjct: 131 DKHTFPFVLKACAYIFG--LSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARK 188

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
           +F+ + E  +VS+N++I A  R    + AL LFR++Q ++ +P   TM S LS+CA LGS
Sbjct: 189 VFDEMPERSLVSWNSMIDALVRVGEYDSALQLFRDMQ-KSFEPDGYTMQSVLSACAGLGS 247

Query: 241 LDLGKWIHEYIKK-----YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWS 295
           L LG W H ++ +       +D  V +  +LI+M+ KCG L  A  VF  M   D  +W+
Sbjct: 248 LSLGTWSHVFLLRNCDVDVAMD--VLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLASWN 305

Query: 296 AMIVAYATHGQGHKSILMFEEMMK--AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           AMI+ +ATHG+  +++  F+ M+K    V P+ +TF+ LL AC+H G+V++G  YF  M 
Sbjct: 306 AMILGFATHGKAEEAMNCFDCMVKEGKNVKPNSVTFVALLIACNHRGMVNKGRQYFDMMV 365

Query: 354 DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN-NLGL 412
            +YGI P ++HYGC++DLL RAG + EA   +  +P+K   ++WR+LL +C     ++ L
Sbjct: 366 REYGIEPALEHYGCIIDLLARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVEL 425

Query: 413 AKQVIERIF-ELDDSH------GGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGC 465
           ++++   I   ++D+        G YV+LS + A A RW DV  +RKLM D G+ K PGC
Sbjct: 426 SEEIARNIIGTMEDNQSSNSNCSGAYVLLSRVYASANRWNDVGIVRKLMSDHGIRKEPGC 485

Query: 466 SSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEI 525
           SSIE+N +  EFF+GD  H  +  + + L  +   L+ +  V  T+        D  KE 
Sbjct: 486 SSIEINGISNEFFAGDTSHPQTKQIYQQLKVIDDRLRSI--VDATN--------DSSKEY 535

Query: 526 ALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +LR HSE+LAI FGL++ PP T IR+ KNLRVC
Sbjct: 536 SLRLHSERLAIAFGLISLPPQTPIRIFKNLRVC 568


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 203/554 (36%), Positives = 319/554 (57%), Gaps = 10/554 (1%)

Query: 9   ITQSPPPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQ 65
           I Q     +C N+   + +LP     + L   K +H   ++    N + V T L++   +
Sbjct: 198 IMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAK 257

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVEL-LNSGLLPDDYS 124
                 + +A  +FD +   + V ++ M  GY  S     A+ LF ++ L   + P   +
Sbjct: 258 ---CQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVT 314

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
             S+L+ACA +    L  G++LHC+ IKLG   ++ +  TL+++YA+C  ++ A R F+ 
Sbjct: 315 LGSVLRACAKL--TDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDX 372

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
           ++    VS++AI++   ++     ALS+FR +Q   + P   TML  L +C+ L +L  G
Sbjct: 373 MNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG 432

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
              H Y+   G      +  ALIDM++KCG++  A  VF+ M   D  +W+AMI+ Y  H
Sbjct: 433 FCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIH 492

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364
           G G +++ +F +++   + PD+ITF+ LL +CSH+GLV EG  +F +M   + IVP ++H
Sbjct: 493 GLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEH 552

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
             CMVD+LGRAG +DEA+ FI  +P +    +W  LLS+C  H N+ L ++V ++I  L 
Sbjct: 553 CICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLG 612

Query: 425 DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVH 484
               G++V+LSN+ + AGRW+D  ++R   KD G+ K+PGCS IE+N +V  F  GD  H
Sbjct: 613 PESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSH 672

Query: 485 SYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTP 544
              + + + L+EL+ E+K +GY  + S V   D+E+EEKE  L YHSEKLAI FG+LN  
Sbjct: 673 LQLSQINRKLEELLVEMKRLGYQAECSFVFQ-DVEEEEKEQILLYHSEKLAIAFGILNLK 731

Query: 545 PGTTIRVVKNLRVC 558
            G  I V KNLRVC
Sbjct: 732 AGRPILVTKNLRVC 745



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/408 (30%), Positives = 211/408 (51%), Gaps = 18/408 (4%)

Query: 23  NALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINF---CTQNPTTSSMEHAH 76
           N L LL  C   + L   K+IH   +K     D +VL KL      C Q      +  A 
Sbjct: 10  NYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQ------VVLAR 63

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            LFD IP P ++L+N + R Y+ +     AI L+  +L+ G+ P+ Y++P +LKAC+  G
Sbjct: 64  RLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACS--G 121

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
             A+E+G ++H  A   GL S+++VCT L++ YA+C  +  A+R+F ++S   VV++NA+
Sbjct: 122 LLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAM 181

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           I   +     ++A+ L  ++QE  + P   T++  L +     +L  GK +H Y  +   
Sbjct: 182 IAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSF 241

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
           D  V V T L+DM+AKC  L  A  +FD M  ++  +WSAMI  Y       +++ +F++
Sbjct: 242 DNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQ 301

Query: 317 M-MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
           M +K  + P  +T   +L AC+    +  G    +    K G V  I     ++ +  + 
Sbjct: 302 MILKDAMDPTPVTLGSVLRACAKLTDLSRG-RKLHCYIIKLGXVLDILLGNTLLSMYAKC 360

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
           G +D+A RF D +  K + + +  ++S C  + N  +A  +  R+ +L
Sbjct: 361 GVIDDAIRFFDXMNPKDS-VSFSAIVSGCVQNGNAAVALSIF-RMMQL 406



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 163/324 (50%), Gaps = 9/324 (2%)

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
           AC+ +++L E K++H   +K   N++  V   L  LY  C+ V  ARR+F+ I  P V+ 
Sbjct: 17  ACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVIL 76

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +N II AYA +   + A+ L+  +    ++P   T    L +C+ L +++ G  IH + K
Sbjct: 77  WNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAK 136

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
            +GL+  V V TAL+D +AKCG L +A  +F +MS +D  AW+AMI   + +G    ++ 
Sbjct: 137 MFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQ 196

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKY--GIVPGIKHYGCMV 369
           +  +M +  + P+  T +G+L        +  G   + Y +R  +  G+V G      ++
Sbjct: 197 LIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTG----LL 252

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429
           D+  +   L  A +  D + +++  + W  ++      + +  A ++ +++  L D+   
Sbjct: 253 DMYAKCQCLLYARKIFDVMGVRN-EVSWSAMIGGYVXSDCMKEALELFDQMI-LKDAMDP 310

Query: 430 DYVILSNLCARAGRWEDVDYLRKL 453
             V L ++     +  D+   RKL
Sbjct: 311 TPVTLGSVLRACAKLTDLSRGRKL 334


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 199/541 (36%), Positives = 318/541 (58%), Gaps = 18/541 (3%)

Query: 26   SLLPRCTSFRG----LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
            S+L  C+S  G      QIHA  +K  +  D  V T LI+  ++      ME A  LF  
Sbjct: 1041 SVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKR---GKMEEAEFLFVN 1097

Query: 82   IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
                D+  +N +  GY  S    +A+ L++ +  SG   D  +  +  KA    G   L+
Sbjct: 1098 QDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAG--GLVGLK 1155

Query: 142  EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            +GKQ+H   +K G N +L+V + ++++Y +C ++E+ARR+F  I  P  V++  +I+   
Sbjct: 1156 QGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCV 1215

Query: 202  RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY--GLDKY 259
             + +   AL  + +++   ++P + T  + + +C+LL +L+ G+ IH  I K     D +
Sbjct: 1216 ENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPF 1275

Query: 260  VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
            V   T+L+DM+AKCG ++DA  +F   + +   +W+AMIV  A HG   +++  F+ M  
Sbjct: 1276 VM--TSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKS 1333

Query: 320  AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
              V PD +TF+G+L ACSH+GLV E +  FYSM+  YGI P I+HY C+VD L RAGR++
Sbjct: 1334 RGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIE 1393

Query: 380  EAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439
            EA + I  +P +++  ++RTLL++C    +    K+V E++  L+ S    YV+LSN+ A
Sbjct: 1394 EAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYA 1453

Query: 440  RAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVK 499
             A +WE+V   R +M+   V K PG S +++ N V  F +GD  H  +  +   ++ ++K
Sbjct: 1454 AANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMK 1513

Query: 500  ELKMVGYVPDT--SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRV 557
             ++  GYVPDT  +LV   D+E+E+KE +L YHSEKLAI +GL+ TPP TT+RV+KNLRV
Sbjct: 1514 RIREEGYVPDTDFALV---DVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRV 1570

Query: 558  C 558
            C
Sbjct: 1571 C 1571



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 122/453 (26%), Positives = 214/453 (47%), Gaps = 53/453 (11%)

Query: 38   KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
            KQIH + +++ L   ++V   LIN   +     S+  A  +F ++ E D++ +NTM  G 
Sbjct: 955  KQIHGIVMRSGLDQVVSVGNCLINMYVK---AGSVSRARSVFGQMNEVDLISWNTMISGC 1011

Query: 98   SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG----KQLHCFAIKL 153
            + S     ++ +FV LL   LLPD ++  S+L+AC+     +LE G     Q+H  A+K 
Sbjct: 1012 TLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACS-----SLEGGYYLATQIHACAMKA 1066

Query: 154  GLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLF 213
            G+  + +V T LI++Y++   +E A  +F N     + S+NAI+  Y  S    +AL L+
Sbjct: 1067 GVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLY 1126

Query: 214  RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273
              +QE   +   +T+++A  +   L  L  GK IH  + K G +  + V + ++DM+ KC
Sbjct: 1127 ILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKC 1186

Query: 274  GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
            G ++ A  VF  +   D  AW+ MI     +GQ   ++  + +M  ++V PDE TF  L+
Sbjct: 1187 GEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLV 1246

Query: 334  YACSHTGLVDEGWN---------------YFYSMRDKYGIVPGIK--------------- 363
             ACS    +++G                    S+ D Y     I+               
Sbjct: 1247 KACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIA 1306

Query: 364  HYGCMVDLLGRAGRLDEAYRFIDELPIKST---PILWRTLLSSCSSHNNLGLAKQVIERI 420
             +  M+  L + G   EA +F   +  +      + +  +LS+CS   + GL  +  E  
Sbjct: 1307 SWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACS---HSGLVSEAYENF 1363

Query: 421  FELDDSHGGD-----YVILSNLCARAGRWEDVD 448
            + +  ++G +     Y  L +  +RAGR E+ +
Sbjct: 1364 YSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAE 1396



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 160/322 (49%), Gaps = 9/322 (2%)

Query: 86   DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
            D++++N     + +      A+  FV+++NS +  D  +F  +L   A  G   LE GKQ
Sbjct: 899  DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVA--GLNCLELGKQ 956

Query: 146  LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSR 205
            +H   ++ GL+  + V   LIN+Y +   V  AR +F  ++E  ++S+N +I+    S  
Sbjct: 957  IHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGL 1016

Query: 206  PNEALSLFRELQERNLKPTDVTMLSALSSCALL-GSLDLGKWIHEYIKKYG--LDKYVKV 262
               ++ +F  L   +L P   T+ S L +C+ L G   L   IH    K G  LD +  V
Sbjct: 1017 EECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSF--V 1074

Query: 263  NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
            +TALID+++K G++++A  +F N  G D  +W+A++  Y   G   K++ ++  M ++  
Sbjct: 1075 STALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGE 1134

Query: 323  SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
              D+IT +    A      + +G    +++  K G    +     ++D+  + G ++ A 
Sbjct: 1135 RSDQITLVNAAKAAGGLVGLKQG-KQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESAR 1193

Query: 383  RFIDELPIKSTPILWRTLLSSC 404
            R   E+P     + W T++S C
Sbjct: 1194 RVFSEIP-SPDDVAWTTMISGC 1214



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 105/202 (51%), Gaps = 3/202 (1%)

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC--VV 191
            + A  L  GK+ H   +  G + + +V   LI +YA+C  + +AR++F+   +    +V
Sbjct: 666 AIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLV 725

Query: 192 SYNAIITAYA-RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY 250
           ++NAI++A A  + + ++   LFR L+   +  T  T+      C L  S    + +H Y
Sbjct: 726 TWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGY 785

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310
             K GL   V V  AL++++AK G + +A  +FD M+ +D   W+ M+ AY      +++
Sbjct: 786 AVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEA 845

Query: 311 ILMFEEMMKAQVSPDEITFLGL 332
           +L+F E  +    PD++T   L
Sbjct: 846 MLLFSEFHRTGFRPDDVTLRTL 867



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 93/412 (22%), Positives = 178/412 (43%), Gaps = 46/412 (11%)

Query: 2    ATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTK 58
            AT+ + P+T  P   L  + P   S+L +  +   L   K+ HA  + +    D  V   
Sbjct: 639  ATSTANPLT--PRAHLIHSLPQCFSILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNN 696

Query: 59   LINFCTQNPTTSSMEHAHLLFDRIPEP--DIVLFNTMARGYSRSKTPIRAIFLFVELLNS 116
            LI   T      S+  A  LFD  P+   D+V +N +    +         F    LL  
Sbjct: 697  LI---TMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRR 753

Query: 117  GLLPDD-YSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDV 175
             ++    ++   + K C    + +  E   LH +A+K+GL  +++V   L+N+YA+   +
Sbjct: 754  SVVSTTRHTLAPVFKMCLLSASPSASE--SLHGYAVKIGLQWDVFVAGALVNIYAKFGLI 811

Query: 176  EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTM--LSALS 233
              AR +F+ ++   VV +N ++ AY  +    EA+ LF E      +P DVT+  LS + 
Sbjct: 812  REARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVV 871

Query: 234  SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
             C         K I E      L ++    T L               ++D+  G D   
Sbjct: 872  KCK--------KNILE------LKQFKAYATKLF--------------MYDD-DGSDVIV 902

Query: 294  WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
            W+  +  +   G+  +++  F +M+ ++V+ D +TF+ +L   +    ++ G    + + 
Sbjct: 903  WNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELG-KQIHGIV 961

Query: 354  DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS 405
             + G+   +    C++++  +AG +  A     ++  +   I W T++S C+
Sbjct: 962  MRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMN-EVDLISWNTMISGCT 1012


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 188/489 (38%), Positives = 296/489 (60%), Gaps = 3/489 (0%)

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
           S +E +  LF  + E D + +  M  G++++     AI LF E+    L  D Y+F S+L
Sbjct: 222 SRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVL 281

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC 189
            AC   G  AL+EGKQ+H + I+     N++V + L+++Y +C  +++A  +F  ++   
Sbjct: 282 TACG--GVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKN 339

Query: 190 VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           VVS+ A++  Y ++    EA+ +F ++Q   ++P D T+ S +SSCA L SL+ G   H 
Sbjct: 340 VVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHC 399

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
                GL  ++ V+ AL+ ++ KCG ++D+  +F  MS  D  +W+A++  YA  G+ ++
Sbjct: 400 RALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANE 459

Query: 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369
           ++ +FE M+     PD++TF+G+L ACS  GLV +G   F SM  ++ I+P   HY CM+
Sbjct: 460 TLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMI 519

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429
           DL  RAGRL+EA +FI+++P     I W +LLSSC  H N+ + K   E + +L+  +  
Sbjct: 520 DLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTA 579

Query: 430 DYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTD 489
            Y++LS++ A  G+WE+V  LRK M+D+G+ K PGCS I+  N V  F + D  + +S  
Sbjct: 580 SYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQ 639

Query: 490 LQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTI 549
           +   L++L  ++   GYVPD + V H D++D EK   L +HSEKLAI FGL+  PPG  I
Sbjct: 640 IYSELEKLNYKMVQEGYVPDMNSVLH-DVDDSEKIKMLNHHSEKLAIAFGLIFIPPGLPI 698

Query: 550 RVVKNLRVC 558
           RVVKNLRVC
Sbjct: 699 RVVKNLRVC 707



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/482 (23%), Positives = 218/482 (45%), Gaps = 78/482 (16%)

Query: 27  LLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPD 86
           LL  C   R  K+IH   IK     ++ +L  L+   +       + +A  +FD++P+ +
Sbjct: 21  LLKHC---RDTKKIHCHIIKAFRNPEIFLLNNLV---SAYAKFDRITYARRVFDQMPQRN 74

Query: 87  IVLFNTMARGYSR-----------SKTPIRAIFLFVELLNS----GLLPDD--------Y 123
           +  +NT+   YS+              P R +  +  L+++    G L           Y
Sbjct: 75  LYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLY 134

Query: 124 SFPSLLKACACVGAEALEE-------GKQLHCFAIKLGLNSNLYVCTTLINLYAE----- 171
           + P  L   A      L         G Q+H   +K G  S ++V + L+++Y++     
Sbjct: 135 NGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVF 194

Query: 172 --------------------------CSDVEAARRIFENISEPCVVSYNAIITAYARSSR 205
                                     CS +E +R++F ++ E   +S+ A+I  + ++  
Sbjct: 195 CARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGL 254

Query: 206 PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTA 265
             EA+ LFRE++  NL+    T  S L++C  + +L  GK +H YI +      + V +A
Sbjct: 255 DREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSA 314

Query: 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
           L+DM+ KC  +  A +VF  M+ K+  +W+AM+V Y  +G   +++ +F +M    + PD
Sbjct: 315 LVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPD 374

Query: 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI 385
           + T   ++ +C++   ++EG   F+      G++  I     +V L G+ G +++++R  
Sbjct: 375 DFTLGSVISSCANLASLEEGAQ-FHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLF 433

Query: 386 DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD-----YVILSNLCAR 440
            E+      + W  L+   S +   G A + + R+FE   +HG       ++ + + C+R
Sbjct: 434 SEMSY-VDEVSWTALV---SGYAQFGKANETL-RLFESMLAHGFKPDKVTFIGVLSACSR 488

Query: 441 AG 442
           AG
Sbjct: 489 AG 490



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 170/337 (50%), Gaps = 15/337 (4%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDR 81
           S+L  C     L   KQ+HA  I+T  Q+++ V + L++ +C       S++ A  +F +
Sbjct: 279 SVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYC----KCKSIKSAETVFRK 334

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +   ++V +  M  GY ++     A+ +F ++ N+G+ PDD++  S++ +CA +   +LE
Sbjct: 335 MNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLA--SLE 392

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           EG Q HC A+  GL S + V   L+ LY +C  +E + R+F  +S    VS+ A+++ YA
Sbjct: 393 EGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYA 452

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE-YIKKYGLDKYV 260
           +  + NE L LF  +     KP  VT +  LS+C+  G +  G  I E  IK++ +    
Sbjct: 453 QFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIE 512

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
              T +ID+ ++ GRL++A    + M    D   W++++ +   H          E ++K
Sbjct: 513 DHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLK 572

Query: 320 AQV-SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355
            +  +      L  +YA    G  +E  N    MRDK
Sbjct: 573 LEPHNTASYILLSSIYAAK--GKWEEVANLRKGMRDK 607



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 129/295 (43%), Gaps = 73/295 (24%)

Query: 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
            NS  L + Y    LLK C         + K++HC  IK   N  +++   L++ YA+  
Sbjct: 9   FNSMSLSNHYC--ELLKHC--------RDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFD 58

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNL------------ 221
            +  ARR+F+ + +  + S+N ++++Y++ +   E   +F  +  R++            
Sbjct: 59  RITYARRVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAG 118

Query: 222 --------KPTDVTMLS--------ALSSCALL----GSLDLGKWIHEYIKKYGLDKYVK 261
                   K  ++ + +        ALS+  +L    G + LG  +H ++ K+G   YV 
Sbjct: 119 RGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVF 178

Query: 262 VNTALIDMHAK-------------------------------CGRLDDAVSVFDNMSGKD 290
           V + L+DM++K                               C R++D+  +F +M  KD
Sbjct: 179 VGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKD 238

Query: 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
           + +W+AMI  +  +G   ++I +F EM    +  D+ TF  +L AC     + EG
Sbjct: 239 SISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEG 293


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 196/540 (36%), Positives = 319/540 (59%), Gaps = 13/540 (2%)

Query: 27  LLPRCTSFRGL-KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP 85
           ++  C +  GL +Q+H++   +   + ++V   L+ + ++N     +E A ++F+ + E 
Sbjct: 146 VITACCNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGI---LEEAEMVFNGMGEE 202

Query: 86  --DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
             D V +N+M   Y + K  ++A+ L+ ++++ G   D ++  S+L   +CV  E L  G
Sbjct: 203 VRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCV--EDLSGG 260

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAEC-SDVEAARRIFENISEPCVVSYNAIITAYAR 202
            Q H  AIK G N N +V + LI++YA+C + +  +R++FE I    +V +N +I+ Y++
Sbjct: 261 LQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQ 320

Query: 203 SSRPN-EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL-DKYV 260
           +   + EAL  FR++Q     P D + + A+S+C+ L S   GK  H    K  +    +
Sbjct: 321 NKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQI 380

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            VN AL+ M++KCG L DA  +F  M   +T   +++I  YA HG G +S+ +FE+M+ A
Sbjct: 381 SVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAA 440

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
            ++P  IT + +L AC+HTG V+EG  YF  M+D +GI P  +HY CM+DLLGRAG+L E
Sbjct: 441 SIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSE 500

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           A R ID +P       W  LL +C  + N+ LA++   +  +L+ ++   Y++L+++ + 
Sbjct: 501 AERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSA 560

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
           A +WE+   +RKLM+DRG+ K PGCS IE+N  V  F + D  H    ++   LDE+  +
Sbjct: 561 ARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPRIKEIHMYLDEMFVK 620

Query: 501 LKMVGYVPDT--SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +K  GYVPD   + V   +  ++EKEI L +HSEKLA+ FGLL T  G  + VVKNLR+C
Sbjct: 621 MKRAGYVPDVRWAFVKDDETGEQEKEIMLAHHSEKLAVAFGLLFTKHGEPLLVVKNLRIC 680



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/392 (28%), Positives = 198/392 (50%), Gaps = 20/392 (5%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           AH LFD+IP+PD+V FNT+   Y+     + A+ LF E+   GL+ D ++F  ++ AC C
Sbjct: 93  AHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVITAC-C 151

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV--VS 192
                +   +QLH  A   G +S + V  +L+  Y++   +E A  +F  + E     VS
Sbjct: 152 NHVGLI---RQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVS 208

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +N++I AY +  R  +AL+L+R++  R  +    T+ S L++ + +  L  G   H    
Sbjct: 209 WNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAI 268

Query: 253 KYGLDKYVKVNTALIDMHAKCGR-LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ-GHKS 310
           K G +K   V + LIDM+AKCG  + ++  VF+ + G D   W+ MI  Y+ + +   ++
Sbjct: 269 KTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEA 328

Query: 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG-IKHYGCMV 369
           +  F +M +A   PD+ +F+  + ACS+     +G   F+++  K  I    I     +V
Sbjct: 329 LECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQG-KQFHALAMKSEIPSNQISVNNALV 387

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE--LDDSH 427
            +  + G L +A +    +P  +T  L  ++++  + H   G+  + +  +FE  L  S 
Sbjct: 388 TMYSKCGNLQDARKLFQRMPQHNTVTL-NSIIAGYAQH---GIGTESLN-LFEQMLAASI 442

Query: 428 GGDYVILSNL---CARAGRWEDVDYLRKLMKD 456
               + L ++   CA  GR E+      +MKD
Sbjct: 443 APTSITLVSILSACAHTGRVEEGKKYFNMMKD 474



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 150/324 (46%), Gaps = 42/324 (12%)

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           SF  +LK+C  +  + L  GK LH   +K  + S+ Y+    I LY++C+ +  A   F 
Sbjct: 10  SFRQILKSC--IANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFN 67

Query: 184 NISEPCVVSYNAIITAYARSS-------------RPN------------------EALSL 212
              EP V S+NA+I AYA+ S             +P+                   ALSL
Sbjct: 68  QTHEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSL 127

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           F E++E  L     T    +++C     + L + +H      G D YV V  +L+  ++K
Sbjct: 128 FGEMREMGLVMDGFTFSGVITACC--NHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSK 185

Query: 273 CGRLDDAVSVFDNMSG--KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
            G L++A  VF+ M    +D  +W++MIVAY  H +G K++ ++ +M+      D  T  
Sbjct: 186 NGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLA 245

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC-MVDLLGRAGR-LDEAYRFIDEL 388
            +L   S    +  G   F++   K G     +H G  ++D+  + G  + E+ +  +E+
Sbjct: 246 SVLTTFSCVEDLSGGLQ-FHAKAIKTGFNKN-RHVGSGLIDMYAKCGAGMSESRKVFEEI 303

Query: 389 PIKSTPILWRTLLSSCSSHNNLGL 412
              S  ++W T++S  S +  L +
Sbjct: 304 -CGSDLVVWNTMISGYSQNKELSV 326


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 188/521 (36%), Positives = 311/521 (59%), Gaps = 6/521 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +QIH ++IKT  ++D+ V   LI+  ++      ++ A  + + +   D+V + +M  GY
Sbjct: 365 EQIHLLSIKTGFESDMYVSGVLIDMYSK---YGWLDKARRILEVLEAKDVVSWTSMIAGY 421

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            + +    A+  F ++   G+ PD+    S + ACA  G +A+ +G+Q+H      G ++
Sbjct: 422 VQHEFCKEALETFKDMQLFGIWPDNIGLASAISACA--GIKAMRQGQQIHSRVYVSGYSA 479

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           ++ +   L+NLYA C   + A  +FE I     +++N +++ +A+S    EAL +F ++ 
Sbjct: 480 DVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMY 539

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           +  +K    T +S++S+ A L  +  GK IH  + K G     +V  ALI ++ KCG ++
Sbjct: 540 QAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIE 599

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           DA   F  MS ++  +W+ +I + + HG G +++ +F++M +  + P+++TF+G+L ACS
Sbjct: 600 DAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACS 659

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H GLV+EG  YF SM  ++GI P   HY C+VD+LGRAG+LD A +F++E+P+ +  ++W
Sbjct: 660 HVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVW 719

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
           RTLLS+C  H N+ + +   + + EL+      YV+LSN  A  G+W   D++RK+MKDR
Sbjct: 720 RTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDR 779

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           GV K PG S IEV NVV  FF GD +H  +  + K L +L   L  +GY+     + H +
Sbjct: 780 GVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADLDDRLAKIGYIQGNYFLFH-E 838

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            E E+K+     HSEKLA+ FGL++ PP   +RV+KNLRVC
Sbjct: 839 KEKEQKDPTAFVHSEKLAVAFGLMSLPPSMPLRVIKNLRVC 879



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/459 (25%), Positives = 231/459 (50%), Gaps = 21/459 (4%)

Query: 16  KLCTNTPNAL---SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTT 69
           +L   TP+ +   SLL  C S   L   KQ+H+  +K  +  D  +   L++   +    
Sbjct: 236 RLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVK---C 292

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
             +  A  +F      ++VL+N M   Y +     ++  LF +++ +G+ P+++++P LL
Sbjct: 293 GVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLL 352

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC 189
           + C   G   L  G+Q+H  +IK G  S++YV   LI++Y++   ++ ARRI E +    
Sbjct: 353 RTCTYAGEINL--GEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKD 410

Query: 190 VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           VVS+ ++I  Y +     EAL  F+++Q   + P ++ + SA+S+CA + ++  G+ IH 
Sbjct: 411 VVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHS 470

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
            +   G    V +  AL++++A+CGR  +A S+F+ +  KD   W+ M+  +A  G   +
Sbjct: 471 RVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEE 530

Query: 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369
           ++ +F +M +A V  +  TF+  + A ++   + +G    ++   K G     +    ++
Sbjct: 531 ALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQG-KQIHATVIKTGCTSETEVANALI 589

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN----NLGLAKQVIERIFELDD 425
            L G+ G +++A     E+  +   + W T+++SCS H      L L  Q+ +   + +D
Sbjct: 590 SLYGKCGSIEDAKMQFFEMS-ERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPND 648

Query: 426 SHGGDYVILSNLCARAGRWED-VDYLRKLMKDRGVLKVP 463
                ++ +   C+  G  E+ + Y + +  + G+   P
Sbjct: 649 V---TFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRP 684



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 181/368 (49%), Gaps = 7/368 (1%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           IHA  I   L  D      LI+   +      ++ A  +F+++   D V +  M  GY+R
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDLYAKKGL---VQRARRVFEQLSARDNVSWVAMLSGYAR 120

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
           +     A+ L+ ++  SG++P  Y   S+L AC    A   E+G+ +H    K G  S  
Sbjct: 121 NGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSAC--TKAALFEQGRLVHAQVYKQGSCSET 178

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
            V   LI LY     +  A R+F  +     V++N +I+ +A+      AL +F E++  
Sbjct: 179 VVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLS 238

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
              P  VT+ S L++CA +G L+ GK +H Y+ K G+     +  +L+D++ KCG + +A
Sbjct: 239 GWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEA 298

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
           + +F +    +   W+ M+VAY       KS  +F +M+ A V P+E T+  LL  C++ 
Sbjct: 299 LEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYA 358

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRT 399
           G ++ G    + +  K G    +   G ++D+  + G LD+A R ++ L  K   + W +
Sbjct: 359 GEINLG-EQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDV-VSWTS 416

Query: 400 LLSSCSSH 407
           +++    H
Sbjct: 417 MIAGYVQH 424


>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
          Length = 610

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 192/534 (35%), Positives = 318/534 (59%), Gaps = 8/534 (1%)

Query: 28  LPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           +  C   R L+   Q+HA  +    +  L + T+L+          ++E AH + D +PE
Sbjct: 42  ITECVGRRALREGRQVHARMVTAGYRPALYLATRLV---IMYARCGALEDAHNVLDGMPE 98

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
            ++V +  M  GYS+++ P  A  LF+ +L +G  P++++  S+L +C         + K
Sbjct: 99  RNVVSWTAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGIHQHQIK 158

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           Q+H FAIK     +++V ++L+++YA   +++ ARR+F+ +    VVSY  I++ Y R  
Sbjct: 159 QVHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSYTTILSGYTRLG 218

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
              EAL+LFR+L    ++   VT    L++ + L S+D GK +H  I +  L  ++ +  
Sbjct: 219 LDEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPFFMALQN 278

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
           +LIDM++KCG+L  +  VFDNM  +   +W+AM++ Y  HG  ++ + +F   M  +V P
Sbjct: 279 SLIDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLFR-FMCDKVKP 337

Query: 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF 384
           D +T L +L   SH GLVDEG + F  +  +   +   +HYGC++DLLGR+G+L++A   
Sbjct: 338 DSVTLLAVLLGYSHGGLVDEGLDMFDHIVKEQSTLLNTQHYGCVIDLLGRSGQLEKALLL 397

Query: 385 IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444
           I ++P + T  +W +LL +C  H N+ + + V +++F+++  + G+YVILSN+ A A  W
Sbjct: 398 IQKMPFQPTRAIWGSLLGACRVHANVHVGEFVAQKLFDIEPENAGNYVILSNIYAAARMW 457

Query: 445 EDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMV 504
           +DV  LRKLM  + V+K PG S + ++ V+  F S +  H    D+   ++E+   +K  
Sbjct: 458 KDVFRLRKLMLKKTVIKEPGRSWMILDKVIHTFHSSERFHPRKEDINVKINEIYAAIKAA 517

Query: 505 GYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           G+VPD S V H D++DE+KE  L  HSEKLAITFGL++TP   TI+V+KNLR+C
Sbjct: 518 GFVPDLSCVLH-DVDDEQKERMLLGHSEKLAITFGLMSTPSDLTIQVMKNLRIC 570



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 97/195 (49%), Gaps = 5/195 (2%)

Query: 230 SALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK 289
           +A++ C    +L  G+ +H  +   G    + + T L+ M+A+CG L+DA +V D M  +
Sbjct: 40  AAITECVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMPER 99

Query: 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT-GLVDEGWNY 348
           +  +W+AMI  Y+ + +  ++  +F  M++A   P+E T   +L +C+ + G+       
Sbjct: 100 NVVSWTAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGIHQHQIKQ 159

Query: 349 FYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408
            ++   K      +     ++D+  R+  + EA R  D LP +   + + T+L   S + 
Sbjct: 160 VHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDV-VSYTTIL---SGYT 215

Query: 409 NLGLAKQVIERIFEL 423
            LGL ++ +    +L
Sbjct: 216 RLGLDEEALNLFRQL 230


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 202/509 (39%), Positives = 293/509 (57%), Gaps = 30/509 (5%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRS-----------KTPIRAIFLFVELLN----SGLL 119
           A  +FDR+PE D V +NTM  GY+++           ++P+R +F +  +++    +G+L
Sbjct: 142 ARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGML 201

Query: 120 ----------PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLY 169
                     P+  S          V  + +++ ++L     +     N+    T+I  Y
Sbjct: 202 DEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQAREL----FEAMPCQNVSSWNTMITGY 257

Query: 170 AECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTML 229
           A+  D+  AR  F+ + +   +S+ AII  YA+S    EAL LF E++    +    T  
Sbjct: 258 AQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFT 317

Query: 230 SALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK 289
           S LS+CA + +L+LGK +H  + K GL+    V  AL+ M+ KCG +DDA  VF+ +  K
Sbjct: 318 STLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEK 377

Query: 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYF 349
           +  +W+ MI  YA HG G +++++FE M K  + PD++T +G+L ACSHTGLVD+G  YF
Sbjct: 378 EVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYF 437

Query: 350 YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
           YSM   YGI    KHY CM+DLLGRAGRLD+A   +  +P +     W  LL +   H N
Sbjct: 438 YSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGN 497

Query: 410 LGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIE 469
             L ++  + IFE++  + G YV+LSNL A +GRW DV  +R  M+DRGV KVPG S +E
Sbjct: 498 TELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVE 557

Query: 470 VNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRY 529
           V N +  F  GD VH     +   L+EL  ++K  GYV  T LV H D+E+EEK   L+Y
Sbjct: 558 VQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLH-DVEEEEKVHMLKY 616

Query: 530 HSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           HSEKLA+ FG+L  P G  IRV+KNLRVC
Sbjct: 617 HSEKLAVAFGILAIPAGRPIRVIKNLRVC 645



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 166/371 (44%), Gaps = 40/371 (10%)

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130
           ++  A LLFD++PE D+V +N M  GY+++     A  +F E+       +  S+  +L 
Sbjct: 45  NLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM----PCKNSISWNGMLA 100

Query: 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV 190
           A    G   +E+ ++L  F  K       + C  ++  Y + + +  AR IF+ + E   
Sbjct: 101 AYVQNG--RIEDARRL--FESKADWELISWNC--MMGGYVKRNRLVDARGIFDRMPERDE 154

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL------------ 238
           VS+N +I+ YA++    EA  LF E   R++  T   M+S      +L            
Sbjct: 155 VSWNTMISGYAQNGELLEAQRLFEESPVRDV-FTWTAMVSGYVQNGMLDEARRVFDGMPE 213

Query: 239 -GSLDLGKWIHEYIKKYGLDKYVKVNTA-----------LIDMHAKCGRLDDAVSVFDNM 286
             S+     I  Y++   +D+  ++  A           +I  +A+ G +  A + FD M
Sbjct: 214 KNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRM 273

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
             +D+ +W+A+I  YA  G G +++ +F EM +     +  TF   L  C+    ++ G 
Sbjct: 274 PQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELG- 332

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
              +    K G+  G      ++ +  + G +D+AY   + +  K   + W T+++  + 
Sbjct: 333 KQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEV-VSWNTMIAGYAR 391

Query: 407 HNNLGLAKQVI 417
           H   G  K+ +
Sbjct: 392 H---GFGKEAL 399



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 122/253 (48%), Gaps = 22/253 (8%)

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
           ++ AAR +F+ + E  VVS+NA+++ YA++    EA  +F E+  +N     ++    L+
Sbjct: 45  NLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKN----SISWNGMLA 100

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
           +    G ++  + + E    + L  +      ++  + K  RL DA  +FD M  +D  +
Sbjct: 101 AYVQNGRIEDARRLFESKADWELISW----NCMMGGYVKRNRLVDARGIFDRMPERDEVS 156

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSP--DEITFLGLLYACSHTGLVDEGWNYFYS 351
           W+ MI  YA +G+  ++  +FEE      SP  D  T+  ++      G++DE    F  
Sbjct: 157 WNTMISGYAQNGELLEAQRLFEE------SPVRDVFTWTAMVSGYVQNGMLDEARRVFDG 210

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
           M +K  +      +  ++    +  R+D+A    + +P ++    W T+++  + + ++ 
Sbjct: 211 MPEKNSV-----SWNAIIAGYVQCKRMDQARELFEAMPCQNVSS-WNTMITGYAQNGDIA 264

Query: 412 LAKQVIERIFELD 424
            A+   +R+ + D
Sbjct: 265 QARNFFDRMPQRD 277



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 91/186 (48%), Gaps = 12/186 (6%)

Query: 20  NTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKL-INFCTQNPTTSSMEHA 75
           N     S L  C     L   KQ+H   +K  L++   V   L + +C       +++ A
Sbjct: 312 NRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCK----CGNIDDA 367

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
           +++F+ I E ++V +NTM  GY+R      A+ LF  +  +G+LPDD +   +L AC+  
Sbjct: 368 YIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHT 427

Query: 136 GAEALEEGKQ-LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS-EPCVVSY 193
           G   +++G +  +      G+ +N    T +I+L      ++ A+ + +N+  EP   ++
Sbjct: 428 G--LVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATW 485

Query: 194 NAIITA 199
            A++ A
Sbjct: 486 GALLGA 491


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 205/572 (35%), Positives = 314/572 (54%), Gaps = 43/572 (7%)

Query: 23  NAL-SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           NAL +L  +C +    +    V  +   ++ L   T ++ +  +    +    A  +F+ 
Sbjct: 198 NALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGA----ARSVFEE 253

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +     V++N M  GY  S   + A  LF  ++   +  D+++F S+L ACA  G  A  
Sbjct: 254 VDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFA-- 311

Query: 142 EGKQLHCFAIKLGLN----SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
            GK +H    +L  N    + L V   L+ LY++C ++  ARRIF+N+    VVS+N I+
Sbjct: 312 HGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTIL 371

Query: 198 TAYARSSRPNEALSLFRELQERN-------------------------------LKPTDV 226
           + Y  SS  ++A+ +F E+  +N                               +KP D 
Sbjct: 372 SGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDY 431

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
           T   A+S+C  LGSL  GK +H ++ + G +       ALI M+A+CG + +A  +F  M
Sbjct: 432 TYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVM 491

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
              D+ +W+AMI A   HG G +++ +F+ M+   + PD I+FL +L AC+H+GLVDEG+
Sbjct: 492 PNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGF 551

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
            YF SM+  +GI+PG  HY  ++DLLGRAGR+ EA   I  +P + TP +W  +LS C +
Sbjct: 552 QYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRT 611

Query: 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCS 466
             ++ L     +++F++   H G Y++LSN  + AGRW D   +RKLM+DRGV K PGCS
Sbjct: 612 SGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCS 671

Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
            IE  N V  F  GD  H  +  + K L+ +   ++ +GYVPDT +V H DME  +KE  
Sbjct: 672 WIEAGNKVHVFVVGDTKHPEAHKVYKFLEMVGARMRKLGYVPDTKVVLH-DMEPHQKEHI 730

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           L  HSE+LA+ FGLL  PPG T+ V+KNLR+C
Sbjct: 731 LFAHSERLAVGFGLLKLPPGATVTVLKNLRIC 762



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 127/487 (26%), Positives = 192/487 (39%), Gaps = 113/487 (23%)

Query: 78  LFDRIPEP--DIVLFNTMARGYSRSKTPIRAIFLFVELLNSG-LLPDDYSFPSLLKACAC 134
            FD +P+   D VL N +   Y+R+     A+ +F  LL SG L PDDYSF +LL A   
Sbjct: 110 FFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGH 169

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC---------------------- 172
           +   ++    QL C  +K G    L V   L+ LY +C                      
Sbjct: 170 LPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDAL 229

Query: 173 ------------SDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN 220
                        DV AAR +FE +     V +NA+I+ Y  S    EA  LFR +    
Sbjct: 230 TWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLER 289

Query: 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK----YGLDKYVKVNTALIDMHAKCGRL 276
           +   + T  S LS+CA  G    GK +H  I +    +  +  + VN AL+ +++KCG +
Sbjct: 290 VPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNI 349

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM------------------- 317
             A  +FDNM  KD  +W+ ++  Y       K++ +FEEM                   
Sbjct: 350 AVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGG 409

Query: 318 -----------MKAQ-VSPDEITFLGLLYACSHTGLVDEG------------------WN 347
                      M+A+ V P + T+ G + AC   G +  G                   N
Sbjct: 410 FSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGN 469

Query: 348 YFYSMRDKYG----------IVPGIK--HYGCMVDLLGRAGRLDEAYRFIDEL---PIKS 392
              +M  + G          ++P I    +  M+  LG+ G   EA    D +    I  
Sbjct: 470 ALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYP 529

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG-----GDYVILSNLCARAGRWEDV 447
             I + T+L++C   N+ GL  +  +    +    G       Y  L +L  RAGR  + 
Sbjct: 530 DRISFLTVLTAC---NHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEA 586

Query: 448 DYLRKLM 454
             L K M
Sbjct: 587 RDLIKTM 593



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 129/300 (43%), Gaps = 43/300 (14%)

Query: 163 TTLINLYAECSDVEAARRIFENISEPC--VVSYNAIITAYARSSRPNEALSLFRE-LQER 219
           T+L+  YA    + AA   F+ + +     V +NA+I+AYAR+S    A+++FR  L   
Sbjct: 92  TSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLASG 151

Query: 220 NLKPTDVTMLSALSSCALLGSLDLG--KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           +L+P D +  + LS+   L ++ +     +   + K G    + V+ AL+ ++ KC  L+
Sbjct: 152 SLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALE 211

Query: 278 ---DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE------------------ 316
              DA  V D M  KD   W+ M+V Y   G    +  +FEE                  
Sbjct: 212 ATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVH 271

Query: 317 -------------MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM-RDKYGIVP-- 360
                        M+  +V  DE TF  +L AC++ G    G +    + R +   VP  
Sbjct: 272 SGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEA 331

Query: 361 GIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
            +     +V L  + G +  A R  D +  K   + W T+LS     + L  A +V E +
Sbjct: 332 ALPVNNALVTLYSKCGNIAVARRIFDNMKSKDV-VSWNTILSGYVESSCLDKAVEVFEEM 390


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 211/605 (34%), Positives = 338/605 (55%), Gaps = 62/605 (10%)

Query: 9   ITQSPPPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQ 65
           I    P    ++  + +++LP C S + +   K++H   I+     D+ V   LI+   +
Sbjct: 215 IVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAK 274

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRS----------------KTPI----- 104
                 ME+A  +F+ +   D+V +N M  GYS+S                  P+     
Sbjct: 275 ---CGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTW 331

Query: 105 --------------RAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFA 150
                          A+ +F +++ SG LP+  +  S+L ACA +GA    +G ++H ++
Sbjct: 332 TAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGA--FSQGMEIHAYS 389

Query: 151 IK----------LGLNSNLYVCTTLINLYAECSDVEAARRIFENI--SEPCVVSYNAIIT 198
           +K           G + +L V   LI++Y++C   +AAR IF++I   E  VV++  +I 
Sbjct: 390 LKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIG 449

Query: 199 AYARSSRPNEALSLFREL--QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI---KK 253
            +A+    N+AL LF E+  +   + P   T+   L +CA L ++ +GK IH Y+    +
Sbjct: 450 GHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQ 509

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
           Y    Y   N  LI+M++KCG +D A  VFD+MS K   +W++M+  Y  HG+G +++ +
Sbjct: 510 YDSSAYFVAN-CLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDI 568

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           F++M KA   PD+ITFL +LYACSH G+VD+G +YF SM   YG+ P  +HY   +DLL 
Sbjct: 569 FDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLA 628

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI 433
           R GRLD+A++ + ++P++ T ++W  LLS+C  H+N+ LA+  + ++ E++  + G Y +
Sbjct: 629 RFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTL 688

Query: 434 LSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKA 493
           +SN+ A AGRW+DV  +R LMK  G+ K PGCS ++       FF GD  H  S  +   
Sbjct: 689 ISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYAL 748

Query: 494 LDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVK 553
           L+ L+  +K +GYVP+T+   H D+++EEK   L  HSEKLA+ +GLL T PG  IR+ K
Sbjct: 749 LESLIDRIKAMGYVPETNFALH-DVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRITK 807

Query: 554 NLRVC 558
           NLRVC
Sbjct: 808 NLRVC 812



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 149/291 (51%), Gaps = 11/291 (3%)

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130
           + ++A L+ +R+     V +N + R + +      AI +   +L +G   D ++ P +LK
Sbjct: 66  ATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLK 125

Query: 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC- 189
           AC  +   +   G   H      G  SN+++C  L+ +Y+ C  +E A  IF+ I++   
Sbjct: 126 ACGEL--PSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGI 183

Query: 190 --VVSYNAIITAYARSSRPNEALSLFRELQE-RNLKPTD-----VTMLSALSSCALLGSL 241
             V+S+N+I++A+ +SS    AL LF ++    + KPT+     +++++ L +C  L ++
Sbjct: 184 DDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAV 243

Query: 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
              K +H    + G    V V  ALID +AKCG +++AV VF+ M  KD  +W+AM+  Y
Sbjct: 244 PQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGY 303

Query: 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
           +  G    +  +F+ M K  +  D +T+  ++   S  G   E  N F  M
Sbjct: 304 SQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQM 354



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/267 (18%), Positives = 112/267 (41%), Gaps = 11/267 (4%)

Query: 163 TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK 222
           T ++  Y  C   + A  + E ++    V +N +I  + +  R + A+++   +     +
Sbjct: 55  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 114

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
               T+   L +C  L S   G   H  I   G +  V +  AL+ M+++CG L++A  +
Sbjct: 115 LDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 174

Query: 283 FDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMM------KAQVSPDEITFLGLL 333
           FD ++ +   D  +W++++ A+        ++ +F +M             D I+ + +L
Sbjct: 175 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 234

Query: 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
            AC     V +     +    + G    +     ++D   + G ++ A +  + +  K  
Sbjct: 235 PACGSLKAVPQT-KEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDV 293

Query: 394 PILWRTLLSSCSSHNNLGLAKQVIERI 420
            + W  +++  S   N   A ++ + +
Sbjct: 294 -VSWNAMVAGYSQSGNFKAAFELFKNM 319


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 201/523 (38%), Positives = 312/523 (59%), Gaps = 8/523 (1%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           +H   + +    D  + TKLIN   +     S++ A  +FD   E  I ++N + R  + 
Sbjct: 100 VHRRLVSSGFDQDPFLATKLINMYYE---LGSIDRARKVFDETRERTIYVWNALFRALAM 156

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC--VGAEALEEGKQLHCFAIKLGLNS 157
                  + L+V++   G+  D +++  +LKAC    +    L++GK++H   ++ G  +
Sbjct: 157 VGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEA 216

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR--E 215
           N++V TTL+++YA+   V  A  +F  +     VS++A+I  +A++  P +AL LF+   
Sbjct: 217 NIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMM 276

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
           L+  +  P  VTM++ L +CA L +L+ GK IH YI + GLD  + V  ALI M+ +CG 
Sbjct: 277 LEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGE 336

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           +     VFDNM  +D  +W+++I  Y  HG G K+I +FE M+    SP  I+F+ +L A
Sbjct: 337 ILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGA 396

Query: 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
           CSH GLV+EG   F SM  KY I PG++HY CMVDLLGRA RLDEA + I+++  +  P 
Sbjct: 397 CSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFEPGPT 456

Query: 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455
           +W +LL SC  H N+ LA++    +FEL+  + G+YV+L+++ A A  W +   + KL++
Sbjct: 457 VWGSLLGSCRIHCNVELAERASTLLFELEPRNAGNYVLLADIYAEAKMWSEAKSVMKLLE 516

Query: 456 DRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHH 515
            RG+ K+PGCS IEV   V  F S D  +    ++   L +L  E+K  GYVP T++V +
Sbjct: 517 ARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLY 576

Query: 516 GDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            D+++EEKE  +  HSEKLA+ FGL+NT  G TIR+ KNLR+C
Sbjct: 577 -DLDEEEKERIVLGHSEKLAVAFGLINTVKGETIRIRKNLRLC 618



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 161/338 (47%), Gaps = 19/338 (5%)

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179
           P   +F  L+  C+C    +L +G  +H   +  G + + ++ T LIN+Y E   ++ AR
Sbjct: 76  PTQRTFEHLI--CSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRAR 133

Query: 180 RIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL-- 237
           ++F+   E  +  +NA+  A A      E L L+ ++    +     T    L +C +  
Sbjct: 134 KVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSE 193

Query: 238 --LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWS 295
             +  L  GK IH +I ++G +  + V T L+D++AK G +  A SVF  M  K+  +WS
Sbjct: 194 LSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWS 253

Query: 296 AMIVAYATHGQGHKSILMFEEMM-KAQVS-PDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           AMI  +A +    K++ +F+ MM +A  S P+ +T + +L AC+    +++G    +   
Sbjct: 254 AMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQG-KLIHGYI 312

Query: 354 DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413
            + G+   +     ++ + GR G +    R  D +  +   + W +L+S    H   G  
Sbjct: 313 LRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDV-VSWNSLISIYGMH---GFG 368

Query: 414 KQVIERIFELDDSHGG-----DYVILSNLCARAGRWED 446
           K+ I+ IFE     G       ++ +   C+ AG  E+
Sbjct: 369 KKAIQ-IFENMIHQGSSPSYISFITVLGACSHAGLVEE 405


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 203/554 (36%), Positives = 319/554 (57%), Gaps = 10/554 (1%)

Query: 9   ITQSPPPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQ 65
           I Q     +C N+   + +LP     + L   K +H   ++    N + V T L++   +
Sbjct: 198 IMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAK 257

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVEL-LNSGLLPDDYS 124
                 + +A  +FD +   + V ++ M  GY  S     A+ LF ++ L   + P   +
Sbjct: 258 ---CQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVT 314

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
             S+L+ACA +    L  G++LHC+ IKLG   ++ +  TL+++YA+C  ++ A R F+ 
Sbjct: 315 LGSVLRACAKL--TDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDE 372

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
           ++    VS++AI++   ++     ALS+FR +Q   + P   TML  L +C+ L +L  G
Sbjct: 373 MNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG 432

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
              H Y+   G      +  ALIDM++KCG++  A  VF+ M   D  +W+AMI+ Y  H
Sbjct: 433 FCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIH 492

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364
           G G +++ +F +++   + PD+ITF+ LL +CSH+GLV EG  +F +M   + IVP ++H
Sbjct: 493 GLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEH 552

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
             CMVD+LGRAG +DEA+ FI  +P +    +W  LLS+C  H N+ L ++V ++I  L 
Sbjct: 553 CICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLG 612

Query: 425 DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVH 484
               G++V+LSN+ + AGRW+D  ++R   KD G+ K+PGCS IE+N +V  F  GD  H
Sbjct: 613 PESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSH 672

Query: 485 SYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTP 544
              + + + L+EL+ E+K +GY  + S V   D+E+EEKE  L YHSEKLAI FG+LN  
Sbjct: 673 LQLSQINRKLEELLVEMKRLGYQAECSFVFQ-DVEEEEKEQILLYHSEKLAIAFGILNLK 731

Query: 545 PGTTIRVVKNLRVC 558
            G  I V KNLRVC
Sbjct: 732 AGRPILVTKNLRVC 745



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 125/408 (30%), Positives = 212/408 (51%), Gaps = 18/408 (4%)

Query: 23  NALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINF---CTQNPTTSSMEHAH 76
           N L LL  C   + L   K+IH   +K     D +VL KL      C Q      +  A 
Sbjct: 10  NYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQ------VVLAR 63

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            LFD IP P ++L+N + R Y+ +     AI L+  +L+ G+ P+ Y++P +LKAC+  G
Sbjct: 64  RLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACS--G 121

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
             A+E+G ++H  A   GL S+++VCT L++ YA+C  +  A+R+F ++S   VV++NA+
Sbjct: 122 LLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAM 181

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           I   +     ++A+ L  ++QE  + P   T++  L +     +L  GK +H Y  +   
Sbjct: 182 IAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSF 241

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
           D  V V T L+DM+AKC  L  A  +FD M  ++  +WSAMI  Y       +++ +F++
Sbjct: 242 DNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQ 301

Query: 317 M-MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
           M +K  + P  +T   +L AC+    +  G    +    K G V  I     ++ +  + 
Sbjct: 302 MILKDAMDPTPVTLGSVLRACAKLTDLSRG-RKLHCYIIKLGSVLDILLGNTLLSMYAKC 360

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
           G +D+A RF DE+  K + + +  ++S C  + N  +A  +  R+ +L
Sbjct: 361 GVIDDAIRFFDEMNPKDS-VSFSAIVSGCVQNGNAAVALSIF-RMMQL 406



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 164/324 (50%), Gaps = 9/324 (2%)

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
           AC+ +++L E K++H   +K   N++  V   L  LY  C+ V  ARR+F+ I  P V+ 
Sbjct: 17  ACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVIL 76

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +N II AYA +   + A+ L+  +    ++P   T    L +C+ L +++ G  IH + K
Sbjct: 77  WNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAK 136

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
            +GL+  V V TAL+D +AKCG L +A  +F +MS +D  AW+AMI   + +G    ++ 
Sbjct: 137 MFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQ 196

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKY--GIVPGIKHYGCMV 369
           +  +M +  + P+  T +G+L        +  G   + Y +R  +  G+V G      ++
Sbjct: 197 LIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTG----LL 252

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429
           D+  +   L  A +  D + +++  + W  ++    + + +  A ++ +++  L D+   
Sbjct: 253 DMYAKCQCLLYARKIFDVMGVRN-EVSWSAMIGGYVASDCMKEALELFDQMI-LKDAMDP 310

Query: 430 DYVILSNLCARAGRWEDVDYLRKL 453
             V L ++     +  D+   RKL
Sbjct: 311 TPVTLGSVLRACAKLTDLSRGRKL 334


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 211/605 (34%), Positives = 337/605 (55%), Gaps = 62/605 (10%)

Query: 9   ITQSPPPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQ 65
           I    P    ++  + +++LP C S + +   K++H   I+     D+ V   LI+    
Sbjct: 108 IVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALID---A 164

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRS----------------KTPI----- 104
                 ME+A  +F+ +   D+V +N M  GYS+S                  P+     
Sbjct: 165 YAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTW 224

Query: 105 --------------RAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFA 150
                          A+ +F +++ SG LP+  +  S+L ACA +GA    +G ++H ++
Sbjct: 225 TAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGA--FSQGMEIHAYS 282

Query: 151 IK----------LGLNSNLYVCTTLINLYAECSDVEAARRIFENI--SEPCVVSYNAIIT 198
           +K           G + +L V   LI++Y++C   +AAR IF++I   E  VV++  +I 
Sbjct: 283 LKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIG 342

Query: 199 AYARSSRPNEALSLFREL--QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI---KK 253
            +A+    N+AL LF E+  +   + P   T+   L +CA L ++ +GK IH Y+    +
Sbjct: 343 GHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQ 402

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
           Y    Y   N  LI+M++KCG +D A  VFD+MS K   +W++M+  Y  HG+G +++ +
Sbjct: 403 YDSSAYFVAN-CLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDI 461

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           F++M KA   PD+ITFL +LYACSH G+VD+G +YF SM   YG+ P  +HY   +DLL 
Sbjct: 462 FDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLA 521

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI 433
           R GRLD+A++ + ++P++ T ++W  LLS+C  H+N+ LA+  + ++ E++  + G Y +
Sbjct: 522 RFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTL 581

Query: 434 LSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKA 493
           +SN+ A AGRW+DV  +R LMK  G+ K PGCS ++       FF GD  H  S  +   
Sbjct: 582 ISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYAL 641

Query: 494 LDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVK 553
           L+ L+  +K +GYVP+T+   H D+++EEK   L  HSEKLA+ +GLL T PG  IR+ K
Sbjct: 642 LESLIDRIKAMGYVPETNFALH-DVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRITK 700

Query: 554 NLRVC 558
           NLRVC
Sbjct: 701 NLRVC 705



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 128/249 (51%), Gaps = 11/249 (4%)

Query: 113 LLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172
           +L +G   D ++ P +LKAC  +   +   G   H      G  SN+++C  L+ +Y+ C
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGEL--PSYRCGSAFHGLICCNGFESNVFICNALVAMYSRC 58

Query: 173 SDVEAARRIFENISEPC---VVSYNAIITAYARSSRPNEALSLFREL------QERNLKP 223
             +E A  IF+ I++     V+S+N+I++A+ +SS    AL LF ++      +  N + 
Sbjct: 59  GSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERS 118

Query: 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVF 283
             +++++ L +C  L ++   K +H    + G    V V  ALID +AKCG +++AV VF
Sbjct: 119 DIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVF 178

Query: 284 DNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVD 343
           + M  KD  +W+AM+  Y+  G    +  +F+ M K  +  D +T+  ++   S  G   
Sbjct: 179 NMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSH 238

Query: 344 EGWNYFYSM 352
           E  N F  M
Sbjct: 239 EALNVFRQM 247


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 211/586 (36%), Positives = 325/586 (55%), Gaps = 45/586 (7%)

Query: 10  TQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTT 69
           T S  P    +    +SL+  C S + +KQ HA  I T L +      KL+         
Sbjct: 5   TTSAKPFHSDHYSRLVSLIDSCKSMQQIKQTHAQLITTALISHPVSANKLLKLAA----C 60

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIR-AIFLFVELLNS-GLLPDDYSFPS 127
           +S+ +AH LFD+IP+PD+ ++NTM + +S S      ++ +F  L    GL P+ YSF  
Sbjct: 61  ASLSYAHKLFDQIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVF 120

Query: 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE---------------- 171
              AC       ++EG+Q+   A+K+GL +N++V   LI +Y +                
Sbjct: 121 AFSACG--NGLGVQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVD 178

Query: 172 ---------------CSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
                            ++  A+ +F+ + E  VVS++ II  Y +     EAL  F ++
Sbjct: 179 RDLYSWNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKM 238

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
            +   KP + T++SAL++C+ L +LD GKWIH YI K  +    ++  ++IDM+AKCG +
Sbjct: 239 LQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKCGEI 298

Query: 277 DDAVSVF-DNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           + A  VF ++   +    W+AMI  +A HG  +++I +FE+M   ++SP+++TF+ LL A
Sbjct: 299 ESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALLNA 358

Query: 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
           CSH  +V+EG  YF  M   Y I P I+HYGCMVDLL R+G L EA   I  +P+     
Sbjct: 359 CSHGYMVEEGKLYFRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEAEDMISSMPMAPDVA 418

Query: 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLR---K 452
           +W  LL++C  + ++    ++   I  +D +H G +V+LSN+ + +GRW +   LR   +
Sbjct: 419 IWGALLNACRIYKDMERGYRIGRIIKGMDPNHIGCHVLLSNIYSTSGRWNEARILREKNE 478

Query: 453 LMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSL 512
           + +DR   K+PGCSSIE+     +F  GD  H  S ++   LDE+  +LK  GYVP+   
Sbjct: 479 ISRDRK--KIPGCSSIELKGTFHQFLVGDQSHPQSREIYSFLDEMTTKLKSAGYVPELGE 536

Query: 513 VHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           + H   ++E+KE AL  HSEKLAI FGL+NT  GT IR+VKNLRVC
Sbjct: 537 LLHDIDDEEDKETALSVHSEKLAIAFGLMNTANGTPIRIVKNLRVC 582


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  367 bits (942), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 198/534 (37%), Positives = 315/534 (58%), Gaps = 6/534 (1%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           L L  R  +    K  H  T++  LQ D+ +   LIN  ++      +E A  +FD + E
Sbjct: 70  LQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSK---CGFVELARQVFDGMLE 126

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
             +V +NTM   Y+R++    A+ +F E+ N G    +++  S+L AC     +ALE  K
Sbjct: 127 RSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACG-ANCDALE-CK 184

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           +LHC ++K  L+ NLYV T L++LYA+C  +  A ++FE++ +   V++++++  Y +S 
Sbjct: 185 KLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSK 244

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
              EAL L+R  Q  +L+    T+ S + +C+ L +L  GK +H  I+K G    V V +
Sbjct: 245 NYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVAS 304

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
           + +DM+AKCG L ++  +F  +  K+ + W+ +I  +A H +  + +++FE+M +  + P
Sbjct: 305 SAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHP 364

Query: 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF 384
           +E+TF  LL  C HTGLV+EG  +F  MR  YG+ P + HY CMVD+LGRAG L EAY  
Sbjct: 365 NEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYEL 424

Query: 385 IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444
           I  +P + T  +W +LL+SC    NL LA+   +++FEL+  + G++V+LSN+ A   +W
Sbjct: 425 IKSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVLLSNIYAANKQW 484

Query: 445 EDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMV 504
           E++   RKL++D  V KV G S I++ + V  F  G+  H    ++   LD LV EL+  
Sbjct: 485 EEIAKSRKLLRDCDVKKVRGQSWIDIKDKVHIFRVGESSHPRIREICTMLDNLVIELRKF 544

Query: 505 GYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           GY P      H D+E  +KE  L  HSEKLA+ FGL+  P G+T+R++KNLR+C
Sbjct: 545 GYKPSVEHELH-DVEIGKKEELLMQHSEKLALVFGLMCLPEGSTVRIMKNLRIC 597



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 93/217 (42%), Gaps = 12/217 (5%)

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVT----------MLSALSSCALLGSLDLGK 245
           I+   + +S  +  +S+F   ++  L P   +           +  L  CA  G++   K
Sbjct: 24  ILPRRSNTSSLSRNISVFASYEQEELSPGRYSDEFNVVQASDFIEILQLCARNGAVMEAK 83

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
             H    +  L   V ++  LI+ ++KCG ++ A  VFD M  +   +W+ MI  Y  + 
Sbjct: 84  ACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNR 143

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY 365
              +++ +F EM        E T   +L AC       E     + +  K  +   +   
Sbjct: 144 MESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALEC-KKLHCLSMKTSLDLNLYVG 202

Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
             ++DL  + G +++A +  + +  KS+ + W ++++
Sbjct: 203 TALLDLYAKCGMINDAVQVFESMQDKSS-VTWSSMVA 238


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  367 bits (942), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 201/528 (38%), Positives = 318/528 (60%), Gaps = 10/528 (1%)

Query: 33  SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNT 92
           +F   K +H   +KT+ + DL V   L+   T+       + A   F  +P+ D++ ++ 
Sbjct: 162 NFDAGKTVHCSVLKTNYERDLYVGVGLLELYTR---CGDNDDAWRAFGDMPKNDVIPWSF 218

Query: 93  MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
           M   +++S    +A+ +F ++  + ++P+ ++F S+L+A A +  E+L+  K +H  A+K
Sbjct: 219 MISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADI--ESLDLSKTIHGHALK 276

Query: 153 LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL 212
            GL+++++V   L+  YA+C  +E +  +FE +S+   VS+N II +Y +      ALSL
Sbjct: 277 AGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSL 336

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK--YGLDKYVKVNTALIDMH 270
           F  +    ++ T+VT  S L +CA L +L+LG  +H    K  YG D  V V  ALIDM+
Sbjct: 337 FSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQD--VAVGNALIDMY 394

Query: 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           AKCG + DA  +FD +  +D  +W+A+I  Y+ HG G ++I MF  M + +  PDE+TF+
Sbjct: 395 AKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFV 454

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
           G+L ACS+TG +DEG  YF SM+  YGI P ++HY CMV L+GR+G LD+A +FI+++P 
Sbjct: 455 GVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPF 514

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL 450
           + + ++WR LL +C  HN++ L +   +R+ EL+      +V+LSN+ ARA RW +V Y+
Sbjct: 515 EPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWGNVAYV 574

Query: 451 RKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT 510
           RK MK +GV K PG S IE    V  F   D  H+    +   L+ L  + +  GY P  
Sbjct: 575 RKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSHADLKLINGMLEFLNMKTRKAGYSPQL 634

Query: 511 SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           + V   D+ED+EKE  L  HSE+LA+ FGL+  P G  IR++KNLR+C
Sbjct: 635 NAVLL-DVEDDEKERLLWLHSERLALAFGLVRMPAGCPIRIIKNLRIC 681



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 108/426 (25%), Positives = 214/426 (50%), Gaps = 17/426 (3%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           +H   +K    ++  + T LI+       +  +  A  +FD I   D+V +  M   Y+ 
Sbjct: 68  VHGCVLKVGYGSNTFIGTALID---AYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAE 124

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
           +     A+  F ++  +G  P++++F  +LKAC  +G +  + GK +HC  +K     +L
Sbjct: 125 NDCFSEALEFFSQMRVAGFKPNNFTFAGVLKAC--LGLQNFDAGKTVHCSVLKTNYERDL 182

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
           YV   L+ LY  C D + A R F ++ +  V+ ++ +I+ +A+S +  +AL +F +++  
Sbjct: 183 YVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRA 242

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
            + P   T  S L + A + SLDL K IH +  K GL   V V+ AL+  +AKCG ++ +
Sbjct: 243 FVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQS 302

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
           + +F+ +S ++  +W+ +IV+Y   G G +++ +F  M++ QV   E+T+  +L AC+  
Sbjct: 303 MELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATL 362

Query: 340 GLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
             ++ G   +  + +  YG    + +   ++D+  + G + +A    D L ++   + W 
Sbjct: 363 AALELGLQVHCLTAKTIYGQDVAVGN--ALIDMYAKCGSIKDARFMFDMLDLRD-KVSWN 419

Query: 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGG----DYVILSNLCARAGRW-EDVDYLRKL 453
            ++   S H   GL  + I+    + ++        +V + + C+  GR  E   Y   +
Sbjct: 420 AIICGYSMH---GLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSM 476

Query: 454 MKDRGV 459
            +D G+
Sbjct: 477 KQDYGI 482



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 138/259 (53%), Gaps = 2/259 (0%)

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
           ++FD +PE + V F T+  GY++S   I A  LF  L   G   + + F ++LK    V 
Sbjct: 1   MVFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLL--VS 58

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
            E  E G+ +H   +K+G  SN ++ T LI+ Y+    V  AR +F+ IS   +VS+  +
Sbjct: 59  MEWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGM 118

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           I +YA +   +EAL  F +++    KP + T    L +C  L + D GK +H  + K   
Sbjct: 119 IASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNY 178

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
           ++ + V   L++++ +CG  DDA   F +M   D   WS MI  +A  GQ  K++ +F +
Sbjct: 179 ERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQ 238

Query: 317 MMKAQVSPDEITFLGLLYA 335
           M +A V P++ TF  +L A
Sbjct: 239 MRRAFVIPNQFTFSSVLQA 257


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  367 bits (942), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 208/586 (35%), Positives = 308/586 (52%), Gaps = 71/586 (12%)

Query: 39  QIHAVTIKT---HLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPD--------- 86
           Q HA  +K+   ++ +  N L  + + C  +P  S +  A  +FD IPE D         
Sbjct: 170 QFHAAALKSGAGYVTSVSNALVSVYSRCASSP--SLLHSARKVFDDIPEKDERSWTTMMT 227

Query: 87  -----------------------IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDY 123
                                  +V +N M  GY        A+ +   +++SG+  D++
Sbjct: 228 GYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEF 287

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           ++PS+++ACA   A  L+ GKQ+H + ++   + + +   +L+ LY +C     AR IFE
Sbjct: 288 TYPSVIRACA--NARLLQLGKQVHAYVLRRE-DFSFHFDNSLVTLYYKCGKFNEARAIFE 344

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNL---------------------- 221
            +    +VS+NA+++ Y  S    EA  +F+E++E+N+                      
Sbjct: 345 KMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKL 404

Query: 222 ---------KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
                    +P D     A+ SCA+LG+   G+  H  + K G D  +    ALI M+AK
Sbjct: 405 FSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAK 464

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
           CG +++A  VF  M   D+ +W+A+I A   HG G +++ ++EEM+K  + PD ITFL +
Sbjct: 465 CGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTV 524

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L ACSH GLVD+G  YF SM   Y I PG  HY  ++DLL R+G+  EA   I+ LP K 
Sbjct: 525 LTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKP 584

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452
           T  +W  LLS C  H N+ L     +++F L   H G Y++LSN+ A  G+WE+V  +RK
Sbjct: 585 TAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRK 644

Query: 453 LMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSL 512
           LM+DRGV K   CS IE+   V  F   D  H  +  + K L +L KE++ +GYVPDTS 
Sbjct: 645 LMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYKYLQDLGKEMRRLGYVPDTSF 704

Query: 513 VHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           V H    D  KE  L  HSEK+A+ FGL+  PPGTTIR+ KNLR C
Sbjct: 705 VLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTC 750



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 113/519 (21%), Positives = 215/519 (41%), Gaps = 111/519 (21%)

Query: 5   PSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLIN-FC 63
           P+P + ++   +   N    L L  R TS +  + +H   I    Q   ++L +LI+ +C
Sbjct: 3   PNPDLVRAIANRYAANLRLCLPL--RRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYC 60

Query: 64  TQNPTTSSMEHAHLLFDRIPEPD---------------------------------IVLF 90
                +S +++A  LFD I EPD                                  V++
Sbjct: 61  K----SSELDYARQLFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMY 116

Query: 91  NTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFA 150
           N M  G+S +     AI LF ++ + G  PDD+++ S+L   A V  +  ++  Q H  A
Sbjct: 117 NAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALV-VDDEKQCVQFHAAA 175

Query: 151 IKLGLNSNLYVCTTLINLYAECSD----VEAARRIFENISEP----------------C- 189
           +K G      V   L+++Y+ C+     + +AR++F++I E                 C 
Sbjct: 176 LKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCF 235

Query: 190 ---------------VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSS 234
                          +V+YNA+I+ Y       EAL + R +    ++  + T  S + +
Sbjct: 236 DLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRA 295

Query: 235 CALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAW 294
           CA    L LGK +H Y+ +   D     + +L+ ++ KCG+ ++A ++F+ M  KD  +W
Sbjct: 296 CANARLLQLGKQVHAYVLRRE-DFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSW 354

Query: 295 SAMIVAYATHGQGHKSILMFEEMMKAQV-------------------------------S 323
           +A++  Y + G   ++ L+F+EM +  +                                
Sbjct: 355 NALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFE 414

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
           P +  F G + +C+  G    G   F++   K G    +     ++ +  + G ++EA +
Sbjct: 415 PCDYAFSGAIKSCAVLGAYCNG-QQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQ 473

Query: 384 FIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
               +P   + + W  L+++   H +   A  V E + +
Sbjct: 474 VFRTMPCLDS-VSWNALIAALGQHGHGVEAVDVYEEMLK 511



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 92/409 (22%), Positives = 172/409 (42%), Gaps = 86/409 (21%)

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
           + + L+ C  +   +L+  + +H   I  G   + ++   LI++Y + S+++ AR++F+ 
Sbjct: 15  YAANLRLCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDE 74

Query: 185 ISEP------------CV---------------------VSYNAIITAYARSSRPNEALS 211
           ISEP            C                      V YNA+IT ++ ++    A++
Sbjct: 75  ISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAIN 134

Query: 212 LFRELQERNLKPTDVTMLSALSSCALLGSLDLGK---WIHEYIKKYGLDKYVKVNTALID 268
           LF +++    KP D T  S L+  AL+  +D  K     H    K G      V+ AL+ 
Sbjct: 135 LFCKMKHEGFKPDDFTYASVLAGLALV--VDDEKQCVQFHAAALKSGAGYVTSVSNALVS 192

Query: 269 MHAKCGR----LDDAVSVFDNMSGKDTQAWS----------------------------- 295
           ++++C      L  A  VFD++  KD ++W+                             
Sbjct: 193 VYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLV 252

Query: 296 ---AMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNY--FY 350
              AMI  Y   G   +++ M   M+ + +  DE T+  ++ AC++  L+  G     + 
Sbjct: 253 AYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYV 312

Query: 351 SMRDKYGIVPGIKHY-GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
             R+ +       H+   +V L  + G+ +EA    +++P K   + W  LLS   S  +
Sbjct: 313 LRREDFSF-----HFDNSLVTLYYKCGKFNEARAIFEKMPAKDL-VSWNALLSGYVSSGH 366

Query: 410 LGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458
           +G AK + +   E+ + +   ++I+ +  A  G  E+   L   MK  G
Sbjct: 367 IGEAKLIFK---EMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREG 412



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 102/246 (41%), Gaps = 41/246 (16%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +Q HA  +K    + L+    LI   T       +E A  +F  +P  D V +N +    
Sbjct: 437 QQFHAQLVKIGFDSSLSAGNALI---TMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAAL 493

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            +    + A+ ++ E+L  G+ PD  +F ++L AC+  G   +++G++          NS
Sbjct: 494 GQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAG--LVDQGRKY--------FNS 543

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
                            +E   RI      P    Y  +I    RS + +EA S+   L 
Sbjct: 544 -----------------METVYRI-----PPGADHYARLIDLLCRSGKFSEAESIIESLP 581

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL-DKYVKVNTALIDMHAKCGRL 276
               KPT     + LS C + G+++LG  I    K +GL  ++      L +M+A  G+ 
Sbjct: 582 ---FKPTAEIWEALLSGCRVHGNMELG--IIAADKLFGLIPEHDGTYMLLSNMYAATGQW 636

Query: 277 DDAVSV 282
           ++   V
Sbjct: 637 EEVARV 642


>gi|255582129|ref|XP_002531859.1| Cell division protein ftsH, putative [Ricinus communis]
 gi|223528509|gb|EEF30537.1| Cell division protein ftsH, putative [Ricinus communis]
          Length = 1157

 Score =  367 bits (942), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 195/495 (39%), Positives = 300/495 (60%), Gaps = 11/495 (2%)

Query: 25   LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
            LSLL  C+S + L QIH+    + LQ D  ++T+LI F + +P+   + +A  + D    
Sbjct: 668  LSLLKLCSSIKHLYQIHSQIQVSGLQGDTFLVTQLIKFSSLSPS-KDLSYAQSILDHSVH 726

Query: 85   PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
            P  + +N + RGY+ S TP  A+F++  + N G+ P+  +FP LLKACA     A +EGK
Sbjct: 727  PVPLPWNILIRGYADSNTPKDALFVYRNMRNEGIRPNSLTFPFLLKACAA--CFATKEGK 784

Query: 145  QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
            Q+H   IK GL+ ++YV   L+N Y  C  +  A ++F+ + E  VVS+NA+IT+   S 
Sbjct: 785  QVHVEVIKYGLDCDVYVNNNLVNFYGSCKKILDACKVFDEMPERTVVSWNAVITSCVESL 844

Query: 205  RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
            +  EA+  F ++++   +P   TM+  L  CA +G+L LG+WIH  + + GL    ++ T
Sbjct: 845  KLGEAIRYFLKMRDFGFEPDGTTMVLMLVICAEMGNLGLGRWIHSQVIERGLVLNYQLGT 904

Query: 265  ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ-VS 323
            AL+DM+AK G +  A  VFD M  K+   WSAMI+  A HG   + + +F +MM++  + 
Sbjct: 905  ALVDMYAKSGAVGYAKLVFDRMKEKNVWTWSAMILGLAQHGFAKEGLELFLDMMRSSLIH 964

Query: 324  PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
            P+ +TFLG+L ACSH GLV +G+ YF+ M   YGI P + HYG MVD+LGRAG L EAY 
Sbjct: 965  PNYVTFLGVLCACSHAGLVSDGFRYFHEMGHTYGIKPMMVHYGAMVDILGRAGLLKEAYN 1024

Query: 384  FIDELPIKSTPILWRTLLSSCSSH---NNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
            FI ++P +  PI+WRTLLS+CS H   ++ G+A +V +R+ EL+    G++V+++N+ A 
Sbjct: 1025 FITKMPFQPDPIVWRTLLSACSIHDVKDSTGVAYKVRKRLLELEPRRSGNFVMVANMYAD 1084

Query: 441  AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
            AG WE    +R++M+D G+ K  G S +E++  +  FFSG         + + LD L   
Sbjct: 1085 AGMWEKAAKVRRVMRDGGLKKKAGESCVELSGSIHRFFSGYDSQDDKEGMYQLLDGLNLH 1144

Query: 501  LKMVGYVPDTSLVHH 515
            ++M+       LVHH
Sbjct: 1145 MQMMVMF----LVHH 1155



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 180/413 (43%), Gaps = 46/413 (11%)

Query: 32  TSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFN 91
           TS R + +      K H++N+ + + KL++   +  T +  E   +L +         F 
Sbjct: 605 TSIRDIIERAHEIAKEHVRNNRDAIDKLVDILLEKETLTGDEFRAILSE---------FT 655

Query: 92  TMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAI 151
            ++ G    +TP                       SLLK C+     +++   Q+H    
Sbjct: 656 DIS-GAQVERTPCL---------------------SLLKLCS-----SIKHLYQIHSQIQ 688

Query: 152 KLGLNSNLYVCTTLINL--YAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEA 209
             GL  + ++ T LI     +   D+  A+ I ++   P  + +N +I  YA S+ P +A
Sbjct: 689 VSGLQGDTFLVTQLIKFSSLSPSKDLSYAQSILDHSVHPVPLPWNILIRGYADSNTPKDA 748

Query: 210 LSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDM 269
           L ++R ++   ++P  +T    L +CA   +   GK +H  + KYGLD  V VN  L++ 
Sbjct: 749 LFVYRNMRNEGIRPNSLTFPFLLKACAACFATKEGKQVHVEVIKYGLDCDVYVNNNLVNF 808

Query: 270 HAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITF 329
           +  C ++ DA  VFD M  +   +W+A+I +     +  ++I  F +M      PD  T 
Sbjct: 809 YGSCKKILDACKVFDEMPERTVVSWNAVITSCVESLKLGEAIRYFLKMRDFGFEPDGTTM 868

Query: 330 LGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389
           + +L  C+  G +  G  + +S   + G+V   +    +VD+  ++G +  A    D + 
Sbjct: 869 VLMLVICAEMGNLGLG-RWIHSQVIERGLVLNYQLGTALVDMYAKSGAVGYAKLVFDRMK 927

Query: 390 IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS---HGGDYVILSNLCA 439
            K+    W  ++   + H   G AK+ +E   ++  S   H      L  LCA
Sbjct: 928 EKNV-WTWSAMILGLAQH---GFAKEGLELFLDMMRSSLIHPNYVTFLGVLCA 976



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 134/286 (46%), Gaps = 8/286 (2%)

Query: 22   PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
            P  L     C + +  KQ+H   IK  L  D+ V   L+NF     +   +  A  +FD 
Sbjct: 768  PFLLKACAACFATKEGKQVHVEVIKYGLDCDVYVNNNLVNFYG---SCKKILDACKVFDE 824

Query: 82   IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
            +PE  +V +N +      S     AI  F+++ + G  PD  +   +L  CA +G   L 
Sbjct: 825  MPERTVVSWNAVITSCVESLKLGEAIRYFLKMRDFGFEPDGTTMVLMLVICAEMGNLGL- 883

Query: 142  EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
             G+ +H   I+ GL  N  + T L+++YA+   V  A+ +F+ + E  V +++A+I   A
Sbjct: 884  -GRWIHSQVIERGLVLNYQLGTALVDMYAKSGAVGYAKLVFDRMKEKNVWTWSAMILGLA 942

Query: 202  RSSRPNEALSLFRELQERNL-KPTDVTMLSALSSCALLGSLDLG-KWIHEYIKKYGLDKY 259
            +     E L LF ++   +L  P  VT L  L +C+  G +  G ++ HE    YG+   
Sbjct: 943  QHGFAKEGLELFLDMMRSSLIHPNYVTFLGVLCACSHAGLVSDGFRYFHEMGHTYGIKPM 1002

Query: 260  VKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATH 304
            +    A++D+  + G L +A +    M  + D   W  ++ A + H
Sbjct: 1003 MVHYGAMVDILGRAGLLKEAYNFITKMPFQPDPIVWRTLLSACSIH 1048


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  367 bits (942), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 193/477 (40%), Positives = 285/477 (59%), Gaps = 38/477 (7%)

Query: 117 GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVE 176
           GLL D+++ P +LK+CA +    +  G+ +H   +++GL  + YV  +LI++Y +C  + 
Sbjct: 102 GLLGDNFTLPFVLKSCADLSRVCM--GRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIG 159

Query: 177 AARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN---------------- 220
            AR++F+ +    + S+NA+I  Y +      A  LF  ++ RN                
Sbjct: 160 DARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGF 219

Query: 221 -----------------LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
                            +KP  VT++S L +CA   +L+ G+ IH++    GL     V 
Sbjct: 220 AEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQ 279

Query: 264 TALIDMHAKCGRLDDAVSVFDNMS--GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           TAL  M+AKC  L +A   FD ++  GK+  AW+ MI AYA+HG G +++ +FE M++A 
Sbjct: 280 TALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAG 339

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           V PD +TF+GLL  CSH+GL+D G N+F  M   + + P ++HY C+VDLLGRAGRL EA
Sbjct: 340 VQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEA 399

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
              I ++P+++ P +W  LL++C SH NL +A+    R+F L+  + G+YV+LSNL A A
Sbjct: 400 KELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEA 459

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           G WE+V  LR L+K +G+ K PGCS IE+N     F   D  H  + ++ K L+ L +++
Sbjct: 460 GMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKI 519

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           KM GY+PDTS V H D+ +EEKE  L  HSEKLAI FGLLNT PG  +RV KNLR+C
Sbjct: 520 KMAGYIPDTSFVLH-DISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRIC 575



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 125/233 (53%), Gaps = 8/233 (3%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSG--LLPDDYSFPSLLKACACV 135
           LF+R+   +IV +  M  GY+++    +A+ LF E+L  G  + P+  +  S+L ACA  
Sbjct: 195 LFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACA-- 252

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE--PCVVSY 193
            + ALE G+++H FA  +GL+ N  V T L  +YA+C  +  AR  F+ I++    ++++
Sbjct: 253 QSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAW 312

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEYIK 252
           N +ITAYA      EA+S+F  +    ++P  VT +  LS C+  G +D G    ++   
Sbjct: 313 NTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGT 372

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATH 304
            + ++  V+    ++D+  + GRL +A  +   M  +     W A++ A  +H
Sbjct: 373 IHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSH 425



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 102/233 (43%), Gaps = 35/233 (15%)

Query: 210 LSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDM 269
           L  +  +    L   + T+   L SCA L  + +G+ +H    + GL+    V  +LIDM
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151

Query: 270 HAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ-----------GHKSIL------ 312
           + KCG + DA  +FD M  +D  +W+A+I  Y   G+            H++I+      
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMI 211

Query: 313 --------------MFEEMMK--AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKY 356
                         +F+EM++  +++ P+ +T + +L AC+ +  ++ G    +   +  
Sbjct: 212 SGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERG-RRIHDFANGI 270

Query: 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL-WRTLLSSCSSHN 408
           G+         +  +  +   L EA    D +      ++ W T++++ +SH 
Sbjct: 271 GLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHG 323



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 8/122 (6%)

Query: 20  NTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N    +S+LP C     L   ++IH       L  + +V T L     +     S+  A 
Sbjct: 240 NWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAK---CYSLVEAR 296

Query: 77  LLFDRIPE--PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
             FD I +   +++ +NTM   Y+     + A+ +F  +L +G+ PD  +F  LL  C+ 
Sbjct: 297 CCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSH 356

Query: 135 VG 136
            G
Sbjct: 357 SG 358


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  367 bits (942), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 203/584 (34%), Positives = 323/584 (55%), Gaps = 51/584 (8%)

Query: 12  SPPPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPT 68
            P P+L +      +L+  C   R L   K++HA T  ++    + +  +LI+   +   
Sbjct: 60  QPSPRLYS------TLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAK--- 110

Query: 69  TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSL 128
             S+  A +LFD IP+ D+  +NTM  GY+      +A  LF E+ +     D++S+ ++
Sbjct: 111 CGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHR----DNFSWNAV 166

Query: 129 LKACACVG--AEALE--------------------------------EGKQLHCFAIKLG 154
           +      G   EAL+                                 GK++H + I+ G
Sbjct: 167 ISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSG 226

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           L  +  V T L++LY +C  +  AR IF+ +++  +VS+  +I       R  E  SLFR
Sbjct: 227 LELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFR 286

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
           +L    ++P + T    L++CA L +  +GK +H Y+ + G D +    +AL+ +++KCG
Sbjct: 287 DLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCG 346

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
             + A  VF+ M   D  +W+++IV YA +GQ   ++  FE ++++   PDEITF+G+L 
Sbjct: 347 NTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLS 406

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           AC+H GLVD G  YF+S+++K+G+V    HY C++DLL R+GR  EA   ID +P+K   
Sbjct: 407 ACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDK 466

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454
            LW +LL  C  H N+ LA++  + +FEL+  +   Y+ LSN+ A AG W +   +R  M
Sbjct: 467 FLWASLLGGCRIHGNIELAERAAKALFELEPENPATYITLSNIYANAGLWTEETKVRNDM 526

Query: 455 KDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVH 514
            +RG++K PG S IE+   V  F  GD  H   +D+ + L EL K++K  GYV DT+ V 
Sbjct: 527 DNRGIVKKPGKSWIEIKRQVHVFLVGDTSHPKISDIHEYLGELSKKMKEEGYVADTNFVL 586

Query: 515 HGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           H D+E+E+KE  + YHSEKLA+ FG+++T PGT I+V KNLR C
Sbjct: 587 H-DVEEEQKEQNIFYHSEKLAVAFGIISTSPGTPIKVFKNLRTC 629



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 107/252 (42%), Gaps = 54/252 (21%)

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +  II  + + +R  EA+     + +    P+     + +++C     L+LGK +H + K
Sbjct: 35  FEEIIELFCQQNRLKEAVDYLHRIPQ----PSPRLYSTLIAACLRHRKLELGKRVHAHTK 90

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
                  + ++  LI M+AKCG L DA  +FD +  KD  +W+ MI  YA  G+  ++  
Sbjct: 91  ASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARK 150

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW-----NYFYSMRDK------------ 355
           +F+EM       D  ++  ++     +G V +GW     + F  M++             
Sbjct: 151 LFDEMPHR----DNFSWNAVI-----SGYVSQGWYMEALDLFRMMQENESSNCNMFTLSS 201

Query: 356 -------------------YGIVPGIKH----YGCMVDLLGRAGRLDEAYRFIDELPIKS 392
                              Y I  G++     +  ++DL G+ G L+EA    D++  K 
Sbjct: 202 ALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKD 261

Query: 393 TPILWRTLLSSC 404
             + W T++  C
Sbjct: 262 I-VSWTTMIHRC 272


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 195/524 (37%), Positives = 308/524 (58%), Gaps = 32/524 (6%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K +H++ IK+  +  +N    L++  ++      ++ A  +F+++ E ++V + +M  GY
Sbjct: 271 KAVHSLAIKSSFERRINFSNTLLDMYSK---CGDLDGALRVFEKMGERNVVSWTSMIAGY 327

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           +R      AI L  ++   G+  D  +  S+L ACA  G+  L+ GK +H +     + S
Sbjct: 328 TRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGS--LDNGKDVHDYIKANNMES 385

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           NL+VC  L+++YA+C  +EAA  +F  +    ++S+N +I                    
Sbjct: 386 NLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIG------------------- 426

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              LKP   TM   L +CA L +L+ GK IH YI + G      V  AL+D++ KCG L 
Sbjct: 427 --ELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLG 484

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            A  +FD +  KD  +W+ MI  Y  HG G+++I  F EM  A + PDE++F+ +LYACS
Sbjct: 485 LARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACS 544

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H+GL+++GW +FY M++ + I P ++HY CMVDLL R G L +AY FI+ LPI     +W
Sbjct: 545 HSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIW 604

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             LL  C +++++ LA++V ER+FEL+  + G YV+L+N+ A A +WE+V  LR+ +  +
Sbjct: 605 GALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQ 664

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDG-VHSYSTDLQKALDELVKELKMVGYVPDT--SLVH 514
           G+ K PGCS IE+   V  F SG+   H +S +++  L ++ +++K  G+ P T  +L++
Sbjct: 665 GLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALIN 724

Query: 515 HGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             +M   +KE+AL  HSEKLA+ FGLL  PP  TIRV KNLRVC
Sbjct: 725 ADEM---QKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVC 765



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 178/355 (50%), Gaps = 30/355 (8%)

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
           E A  LFD++ + D++ +N+M  GY  +    R + ++ +++  G+  D  +  S+L  C
Sbjct: 202 ESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGC 261

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
           A  G  +L  GK +H  AIK      +    TL+++Y++C D++ A R+FE + E  VVS
Sbjct: 262 ANSGTLSL--GKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 319

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           + ++I  Y R  R + A+ L +++++  +K   V + S L +CA  GSLD GK +H+YIK
Sbjct: 320 WTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIK 379

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
              ++  + V  AL+DM+AKCG ++ A SVF  M  KD  +W+ MI              
Sbjct: 380 ANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI-------------- 425

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDL 371
                   ++ PD  T   +L AC+    ++ G   + Y +R+ Y     + +   +VDL
Sbjct: 426 -------GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVAN--ALVDL 476

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
             + G L  A    D +P K   + W  +++    H   G   + I    E+ D+
Sbjct: 477 YVKCGVLGLARLLFDMIPSKDL-VSWTVMIAGYGMH---GYGNEAIATFNEMRDA 527



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/326 (19%), Positives = 145/326 (44%), Gaps = 67/326 (20%)

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           ++ S+L+ CA  G ++  +GK++H       +  +  +   L++ YA C D++  RR+F+
Sbjct: 101 TYSSVLQLCA--GLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFD 158

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
            + +  V  +N +++ YA+     E++ LF+ + E+ ++                     
Sbjct: 159 TMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIE--------------------- 197

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303
           GK                             R + A  +FD +  +D  +W++MI  Y +
Sbjct: 198 GK-----------------------------RPESAFELFDKLCDRDVISWNSMISGYVS 228

Query: 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK 363
           +G   + + ++++MM   +  D  T + +L  C+++G +  G    +S+  K      I 
Sbjct: 229 NGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLG-KAVHSLAIKSSFERRIN 287

Query: 364 HYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS----SHNNLGLAKQVIER 419
               ++D+  + G LD A R  +++  ++  + W ++++  +    S   + L +Q+ + 
Sbjct: 288 FSNTLLDMYSKCGDLDGALRVFEKMGERNV-VSWTSMIAGYTRDGRSDGAIKLLQQMEKE 346

Query: 420 IFELDDSHGGDYVILSNL---CARAG 442
             +L      D V ++++   CAR+G
Sbjct: 347 GVKL------DVVAITSILHACARSG 366



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 2/133 (1%)

Query: 190 VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           V  YNA I  + +      A+ L    ++  L+    T  S L  CA L S   GK +H 
Sbjct: 66  VTDYNAKILHFCQLGDLENAMELICMCKKSELETK--TYSSVLQLCAGLKSFTDGKKVHS 123

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
            IK   +     +   L+  +A CG L +   VFD M  K+   W+ M+  YA  G   +
Sbjct: 124 IIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKE 183

Query: 310 SILMFEEMMKAQV 322
           SI +F+ M++  +
Sbjct: 184 SICLFKIMVEKGI 196


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 194/524 (37%), Positives = 314/524 (59%), Gaps = 8/524 (1%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           ++H   +      D  + TKLI   +      S+++A  +FD+  +  I ++N + R  +
Sbjct: 98  RVHRHILDNGSDQDPFLATKLIGMYSD---LGSVDYARKVFDKTRKRTIYVWNALFRALT 154

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC--VGAEALEEGKQLHCFAIKLGLN 156
            +      + L+ ++   G+  D +++  +LKAC      A+ L +GK++H    + G N
Sbjct: 155 LAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYN 214

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
           S++Y+ TTL+++YA    V+ A  +F  +    VVS++A+I  YA++ +  EAL  FRE+
Sbjct: 215 SHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREM 274

Query: 217 --QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
             + ++  P  VTM+S L +CA L +L+ G+ IH YI + GLD  + V +AL+ M+ +CG
Sbjct: 275 MTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCG 334

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
           +LD    VFD M  +D  +W+++I +Y  HG G K+I +FEEM+    SP  +TF+ +L 
Sbjct: 335 KLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLG 394

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           ACSH GLV+EG   F SM   +GI P ++HY CMVDLLGRA RLDEA + + ++  +  P
Sbjct: 395 ACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGP 454

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454
            +W +LL SC  H N+ LA++   R+F L+  + G+YV+L+++ A A  W++V  ++KL+
Sbjct: 455 KVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLL 514

Query: 455 KDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVH 514
           + RG+ K+PG   +EV   +  F S D  +     +   L +L +++K  GY+P T  V 
Sbjct: 515 EHRGLQKLPGRCWMEVRRKMYSFVSMDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVL 574

Query: 515 HGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           + ++E EEKE  +  HSEKLA+ FGL+NT  G  IR+ KNLR+C
Sbjct: 575 Y-ELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLC 617



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 170/346 (49%), Gaps = 23/346 (6%)

Query: 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE 187
           LL  C C    +L +G ++H   +  G + + ++ T LI +Y++   V+ AR++F+   +
Sbjct: 82  LLILC-CGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRK 140

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA----LLGSLDL 243
             +  +NA+  A   +    E L L+ ++    ++    T    L +C         L  
Sbjct: 141 RTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTK 200

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303
           GK IH ++ + G + +V + T L+DM+A+ G +D A  VF+ M  ++  +WSAMI  YA 
Sbjct: 201 GKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAK 260

Query: 304 HGQGHKSILMFEEMM--KAQVSPDEITFLGLLYACSHTGLVDEGW--NYFYSMRDKYGIV 359
           +G+  +++  F EMM      SP+ +T + +L AC+    +++G   + +   R    I+
Sbjct: 261 NGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSIL 320

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIER 419
           P I     +V + GR G+LD   R  D +  +   + W +L+SS   H   G  ++ I+ 
Sbjct: 321 PVI---SALVTMYGRCGKLDVGQRVFDRMHDRDV-VSWNSLISSYGVH---GYGRKAIQ- 372

Query: 420 IFELDDSHGGD-----YVILSNLCARAGRWEDVDYLRKLM-KDRGV 459
           IFE   ++G       +V +   C+  G  E+   L + M +D G+
Sbjct: 373 IFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGI 418



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 109/267 (40%), Gaps = 37/267 (13%)

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY 250
           +S N +I +  +  +  +AL +    QE +  P+  T    +  C    SL  G  +H +
Sbjct: 47  ISNNQLIQSLCKEGKLKQALRVLS--QESS--PSQQTYELLILCCGHRSSLSDGLRVHRH 102

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310
           I   G D+   + T LI M++  G +D A  VFD    +    W+A+  A    G G + 
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 311 ILMFEEMMKAQVSPDEITFLGLLYACS---------------HTGLVDEGWN-YFYSMRD 354
           + ++ +M +  V  D  T+  +L AC                H  L   G+N + Y M  
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMT- 221

Query: 355 KYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA- 413
                        +VD+  R G +D A    + +P+++  + W  ++ +C + N      
Sbjct: 222 ------------TLVDMYARFGCVDYASYVFNGMPVRNV-VSWSAMI-ACYAKNGKAFEA 267

Query: 414 -KQVIERIFELDDSHGGDYVILSNLCA 439
            +   E + E  DS      ++S L A
Sbjct: 268 LRTFREMMTETKDSSPNSVTMVSVLQA 294


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 197/530 (37%), Positives = 302/530 (56%), Gaps = 48/530 (9%)

Query: 31  CTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLF 90
           C +     Q+H + +   L + L V T LI+   +    + +  A  +FD + EP+IV +
Sbjct: 119 CRALTNGLQLHCLAVGYGLDSHLFVGTTLISMYAE---CACLVFARKVFDEMIEPNIVAW 175

Query: 91  NTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQL-HCF 149
           N +                                       AC   E +++ +Q+  C 
Sbjct: 176 NAIV-------------------------------------AACFRCEGVKDAEQVFRCM 198

Query: 150 AIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEA 209
            I+     NL     ++  Y +  +++ AR +F  +     VS++ +I  +A +   N+A
Sbjct: 199 PIR-----NLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDA 253

Query: 210 LSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDM 269
            + FRE++   ++P +V++   LS+CA  G+ + G+ +H +++K G  + + VN ALID 
Sbjct: 254 FAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDT 313

Query: 270 HAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITF 329
           ++KCG LD A  VFDNM  +   +W+AMI   A HG G ++I +F EM ++ + PD ITF
Sbjct: 314 YSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITF 373

Query: 330 LGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389
           + +LYACSH GLVD G +YF  M + YGI P I+HYGCMVDL GRAG+L +AY F+ ++P
Sbjct: 374 ISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMP 433

Query: 390 IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDY 449
           I    I+WRTLL +CS H NL LA QV  ++ ELD  + GD+V+LSN+ A AG+W+DV  
Sbjct: 434 ISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWKDVAA 493

Query: 450 LRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMV-GYVP 508
           LR+ M  + + K PG S IEVN ++  F +G+  +  + +  + L E++  L++  GYVP
Sbjct: 494 LRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQNDIAVEAHQKLREIMSRLRIEGGYVP 553

Query: 509 DTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +   V H D+E EEKE ++  HSEKLA+ FG+   P G  IRVVKNLR+C
Sbjct: 554 EVGSVLH-DIEVEEKEDSVSQHSEKLAVAFGMAKLPRGRAIRVVKNLRIC 602



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/406 (31%), Positives = 202/406 (49%), Gaps = 48/406 (11%)

Query: 23  NALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           + L+L  +C S R +KQI A+  KT L +   V  KL+  C       S+ +A  LF  I
Sbjct: 7   HCLALFSKCKSLRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVT-LPDSLHYARRLFLDI 65

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL-LPDDYSFPSLLKACACVGAEALE 141
             PD+ ++NT+ RG S S TP  A+ LFVE+    + LPD +SF  LLKA A     AL 
Sbjct: 66  RNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAA--NCRALT 123

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G QLHC A+  GL+S+L+V TTLI++YAEC+ +  AR++F+ + EP +V++NAI+ A  
Sbjct: 124 NGLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACF 183

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           R     +A  +FR +  RNL   ++ ML+                               
Sbjct: 184 RCEGVKDAEQVFRCMPIRNLTSWNI-MLAG------------------------------ 212

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
                   + K G L  A  VF  M  KD  +WS MIV +A +G  + +   F E+ +  
Sbjct: 213 --------YTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREG 264

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           + P+E++  G+L AC+  G  + G    +   +K G +  I     ++D   + G LD A
Sbjct: 265 MRPNEVSLTGVLSACAQAGAFEFG-RILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMA 323

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
               D + ++ + + W  +++  + H   G  ++ I    E+++S+
Sbjct: 324 RLVFDNM-LRRSAVSWTAMIAGMAMH---GYGEEAIRLFNEMEESN 365


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 203/548 (37%), Positives = 322/548 (58%), Gaps = 13/548 (2%)

Query: 13  PPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSM 72
           P     T+   A S LP   S    KQIH   IKT+   D  V T LI+  ++N     M
Sbjct: 421 PDHYTMTSVLKAASSLPEGLSLS--KQIHVHAIKTNNVADSFVSTALIDAYSRN---RCM 475

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
           + A +LF R    D+V +N M  GY++S    + + LF  +   G   DD++  ++LK C
Sbjct: 476 KEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTC 534

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
             + A  + +GKQ+H +AIK G + +L+V + ++++Y +C D+ AA+  F++I  P  V+
Sbjct: 535 GFLFA--INQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVA 592

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +  +I+    +     AL +F +++   + P + T+ +   + + L +L+ G+ IH    
Sbjct: 593 WTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANAL 652

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           K        V T+L+DM+AKCG +DDA  +F  +   +  AW+AM+V  A HG+G +++ 
Sbjct: 653 KLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQ 712

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           +F++M    + PD++TF+G+L ACSH+GLV E + Y  SM   YGI P I+HY C+ D L
Sbjct: 713 LFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADAL 772

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432
           GRAG + EA   ID + ++++  ++RTLL++C    +    K+V  ++ EL+      YV
Sbjct: 773 GRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYV 832

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
           +LSN+ A A +W+++   R +MK   V K PG S IEV N +  F   D  +  +  + K
Sbjct: 833 LLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTELIYK 892

Query: 493 ALDELVKELKMVGYVPDT--SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIR 550
            + ++++++K  GYVP+T  +LV   D+E+EEKE AL YHSEKLA+ FGLL+TPP T IR
Sbjct: 893 KVKDMIRDIKQEGYVPETDFTLV---DVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIR 949

Query: 551 VVKNLRVC 558
           V+KNLRVC
Sbjct: 950 VIKNLRVC 957



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 111/425 (26%), Positives = 212/425 (49%), Gaps = 11/425 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           +Q+H + +K  L   L V   LIN +C        +  A  +F+ + E D++ +N++  G
Sbjct: 342 QQVHCMALKLGLDLMLTVSNSLINMYCK----LRKIGLARTVFNNMSERDLISWNSVIAG 397

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
            ++S   + A+ LF++LL  GL PD Y+  S+LKA + +  E L   KQ+H  AIK    
Sbjct: 398 IAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSL-PEGLSLSKQIHVHAIKTNNV 456

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
           ++ +V T LI+ Y+    ++ A  +F   +   +V++NA+++ Y +S   ++ L LF  +
Sbjct: 457 ADSFVSTALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALM 515

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
            ++  +  D T+ + L +C  L +++ GK +H Y  K G D  + V++ ++DM+ KCG +
Sbjct: 516 HKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDM 575

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
             A   FD++   D  AW+ +I     +G+  +++ +F +M    V PDE T   L  A 
Sbjct: 576 SAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKAS 635

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           S    +++G    ++   K            +VD+  + G +D+AY     + + +    
Sbjct: 636 SCLTALEQG-RQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITA- 693

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELD-DSHGGDYVILSNLCARAGRW-EDVDYLRKLM 454
           W  +L   + H     A Q+ +++  L        ++ + + C+ +G   E   Y+R + 
Sbjct: 694 WNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMH 753

Query: 455 KDRGV 459
           +D G+
Sbjct: 754 RDYGI 758



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 161/321 (50%), Gaps = 8/321 (2%)

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
           +I+  N +  GY  +      +  F++++ S L  D  +F  +L     V  ++L  G+Q
Sbjct: 286 EIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTF--ILVLATAVRLDSLALGQQ 343

Query: 146 LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSR 205
           +HC A+KLGL+  L V  +LIN+Y +   +  AR +F N+SE  ++S+N++I   A+S  
Sbjct: 344 VHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDL 403

Query: 206 PNEALSLFRELQERNLKPTDVTMLSALSSCALL-GSLDLGKWIHEYIKKYGLDKYVKVNT 264
             EA+ LF +L    LKP   TM S L + + L   L L K IH +  K        V+T
Sbjct: 404 EVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVST 463

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
           ALID +++   + +A  +F   +  D  AW+AM+  Y     GHK++ +F  M K     
Sbjct: 464 ALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERS 522

Query: 325 DEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
           D+ T   +L  C     +++G   + Y+++  Y +   +     ++D+  + G +  A  
Sbjct: 523 DDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVS--SGILDMYVKCGDMSAAQF 580

Query: 384 FIDELPIKSTPILWRTLLSSC 404
             D +P+    + W TL+S C
Sbjct: 581 AFDSIPVPD-DVAWTTLISGC 600



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 148/329 (44%), Gaps = 47/329 (14%)

Query: 9   ITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPT 68
           +T SP  KLC ++         C S    +  H    K  L  D  V   L+N   +   
Sbjct: 153 MTLSPMLKLCLHSGYV------CAS----ESFHGYACKIGLDGDDFVAGALVNIYLK--- 199

Query: 69  TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSL 128
              ++   +LF+ +P  D+VL+N M + Y        AI L      SGL P++ +    
Sbjct: 200 FGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEIT---- 255

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP 188
           L+  + +  +  E G+      +K   N N               D  A       +SE 
Sbjct: 256 LRLLSRISGDDSEAGQ------VKSFENGN---------------DASA-------VSE- 286

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
            ++S N I++ Y  + + +  L  F ++ E +L+   VT +  L++   L SL LG+ +H
Sbjct: 287 -IISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVH 345

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
               K GLD  + V+ +LI+M+ K  ++  A +VF+NMS +D  +W+++I   A      
Sbjct: 346 CMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEV 405

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACS 337
           +++ +F ++++  + PD  T   +L A S
Sbjct: 406 EAVCLFMQLLRCGLKPDHYTMTSVLKAAS 434



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 99/192 (51%), Gaps = 5/192 (2%)

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           GK  H   + L  N   ++   LI++Y++C  +  ARR+F+ + E  +VS+N+I+ AYA+
Sbjct: 65  GKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQ 124

Query: 203 SSRP-----NEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
           SS        EA  LFR L++  +  + +T+   L  C   G +   +  H Y  K GLD
Sbjct: 125 SSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLD 184

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
               V  AL++++ K G++ +   +F+ M  +D   W+ M+ AY   G   ++I +    
Sbjct: 185 GDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAF 244

Query: 318 MKAQVSPDEITF 329
             + + P+EIT 
Sbjct: 245 HTSGLHPNEITL 256



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 7/173 (4%)

Query: 61  NFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPI-----RAIFLFVELLN 115
           N  +      S+ +A  +FD++PE D+V +N++   Y++S   +      A  LF  L  
Sbjct: 86  NLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQ 145

Query: 116 SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDV 175
             +     +   +LK C   G     E    H +A K+GL+ + +V   L+N+Y +   V
Sbjct: 146 DVVYTSRMTLSPMLKLCLHSGYVCASE--SFHGYACKIGLDGDDFVAGALVNIYLKFGKV 203

Query: 176 EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTM 228
           +  R +FE +    VV +N ++ AY       EA+ L        L P ++T+
Sbjct: 204 KEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITL 256


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 202/528 (38%), Positives = 303/528 (57%), Gaps = 12/528 (2%)

Query: 34   FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM 93
             R  +Q+HA ++K     + +VLT L++   +      +  A  +FD +P P  V +  +
Sbjct: 542  LRAGEQLHARSLKLPSHTNPHVLTSLLSLYAK---CGLLHRAQRVFDEMPHPSTVPWTAL 598

Query: 94   ARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL 153
               Y  +     A+ +      +G+ PD ++   +L ACA +    L  G+ +   A + 
Sbjct: 599  ITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIAD--LATGETVWRAAEQE 656

Query: 154  GLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLF 213
            G+  +++V T  ++LY +C ++  AR +F+ +     V++ A++  YA +  P EAL LF
Sbjct: 657  GVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLF 716

Query: 214  RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK---VNTALIDMH 270
              +Q   +KP    +  ALS+C  LG+LDLG+   + I+    D+++    + TALIDM+
Sbjct: 717  LAMQAEGMKPDCYAVAGALSACTRLGALDLGR---QAIRMVDWDEFLDNPVLGTALIDMY 773

Query: 271  AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
            AKCG   +A  VF  M  KD   W+AMI+     G    +  +  +M K+ V  ++ TF+
Sbjct: 774  AKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFI 833

Query: 331  GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
            GLL +C+HTGL+ +G  YF++M   Y I P I+HYGCMVDLL RAG L EA++ +D++P+
Sbjct: 834  GLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPM 893

Query: 391  KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL 450
             +  ++   LL  C  H N  LA+ V++++  L+  + G+YV+LSN+ +  GRWED   L
Sbjct: 894  PANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKL 953

Query: 451  RKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT 510
            R  MK +GV KVP CS +E    V EF  GD  H  S  + K LDEL  E+K +GY P T
Sbjct: 954  RLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTT 1013

Query: 511  SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             +V   D+EDEEKE  L +HSEKLAI F LL T PG TIRV KNLRVC
Sbjct: 1014 EVVMF-DVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVC 1060



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 143/282 (50%), Gaps = 3/282 (1%)

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179
           P   + P  LK+ + +    L  G+QLH  ++KL  ++N +V T+L++LYA+C  +  A+
Sbjct: 523 PSHLTIPIALKSASRL-PHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQ 581

Query: 180 RIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG 239
           R+F+ +  P  V + A+ITAY  +    EA+ + R      ++P   T +  L++CA + 
Sbjct: 582 RVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIA 641

Query: 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIV 299
            L  G+ +    ++ G+ + V V TA +D++ KCG +  A  VFD M  KD  AW AM+ 
Sbjct: 642 DLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVG 701

Query: 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359
            YA++G   +++ +F  M    + PD     G L AC+  G +D G      M D    +
Sbjct: 702 GYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLG-RQAIRMVDWDEFL 760

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
                   ++D+  + G   EA+    ++  K   I+W  ++
Sbjct: 761 DNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDI-IVWNAMI 801


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 202/528 (38%), Positives = 303/528 (57%), Gaps = 12/528 (2%)

Query: 34  FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM 93
            R  +Q+HA ++K     + +VLT L++   +      +  A  +FD +P P  V +  +
Sbjct: 87  LRAGEQLHARSLKLPSHTNPHVLTSLLSLYAK---CGLLHRAQRVFDEMPHPSTVPWTAL 143

Query: 94  ARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL 153
              Y  +     A+ +      +G+ PD ++   +L ACA +    L  G+ +   A + 
Sbjct: 144 ITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIAD--LATGETVWRAAEQE 201

Query: 154 GLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLF 213
           G+  +++V T  ++LY +C ++  AR +F+ +     V++ A++  YA +  P EAL LF
Sbjct: 202 GVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLF 261

Query: 214 RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK---VNTALIDMH 270
             +Q   +KP    +  ALS+C  LG+LDLG+   + I+    D+++    + TALIDM+
Sbjct: 262 LAMQAEGMKPDCYAVAGALSACTRLGALDLGR---QAIRMVDWDEFLDNPVLGTALIDMY 318

Query: 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           AKCG   +A  VF  M  KD   W+AMI+     G    +  +  +M K+ V  ++ TF+
Sbjct: 319 AKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFI 378

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
           GLL +C+HTGL+ +G  YF++M   Y I P I+HYGCMVDLL RAG L EA++ +D++P+
Sbjct: 379 GLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPM 438

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL 450
            +  ++   LL  C  H N  LA+ V++++  L+  + G+YV+LSN+ +  GRWED   L
Sbjct: 439 PANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKL 498

Query: 451 RKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT 510
           R  MK +GV KVP CS +E    V EF  GD  H  S  + K LDEL  E+K +GY P T
Sbjct: 499 RLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTT 558

Query: 511 SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +V   D+EDEEKE  L +HSEKLAI F LL T PG TIRV KNLRVC
Sbjct: 559 EVVMF-DVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVC 605



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 143/282 (50%), Gaps = 3/282 (1%)

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179
           P   + P  LK+ + +    L  G+QLH  ++KL  ++N +V T+L++LYA+C  +  A+
Sbjct: 68  PSHLTIPIALKSASRL-PHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQ 126

Query: 180 RIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG 239
           R+F+ +  P  V + A+ITAY  +    EA+ + R      ++P   T +  L++CA + 
Sbjct: 127 RVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIA 186

Query: 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIV 299
            L  G+ +    ++ G+ + V V TA +D++ KCG +  A  VFD M  KD  AW AM+ 
Sbjct: 187 DLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVG 246

Query: 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359
            YA++G   +++ +F  M    + PD     G L AC+  G +D G      M D    +
Sbjct: 247 GYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAI-RMVDWDEFL 305

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
                   ++D+  + G   EA+    ++  K   I+W  ++
Sbjct: 306 DNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDI-IVWNAMI 346


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 201/526 (38%), Positives = 309/526 (58%), Gaps = 7/526 (1%)

Query: 33  SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNT 92
           ++  +K++H   ++  L +DL V +  ++   +     S++ A L+FD++   ++  +N 
Sbjct: 350 AWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIR---CGSIDDAQLIFDKLAVRNVTTWNA 406

Query: 93  MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
           M  G ++ K    A+ LF+++   G  PD  +F ++L A   VG EALE  K++H +AI 
Sbjct: 407 MIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSAN--VGEEALEWVKEVHSYAID 464

Query: 153 LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL 212
            GL  +L V   L+++YA+C +   A+++F+++ E  V ++  +I+  A+    +EA SL
Sbjct: 465 AGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSL 523

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           F ++    + P   T +S LS+CA  G+L+  K +H +    GL   ++V  AL+ M+AK
Sbjct: 524 FLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAK 583

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
           CG +DDA  VFD+M  +D  +W+ MI   A HG+G  ++ +F +M      P+  +F+ +
Sbjct: 584 CGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAV 643

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L ACSH GLVDEG   F S+   YGI P ++HY CMVDLLGRAG+L+EA  FI  +PI+ 
Sbjct: 644 LSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEP 703

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452
               W  LL +C ++ NL +A+   +   +L       YV+LSN+ A  G WE    +R 
Sbjct: 704 GDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRS 763

Query: 453 LMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSL 512
           +M+ RG+ K PG S IEV+N +  F  GD  H  S ++   L +L+K LK  GYVPDT L
Sbjct: 764 MMQRRGIRKEPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKLKDLIKRLKAEGYVPDTRL 823

Query: 513 VHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           V   + + E KE AL  HSEKLAI +GL++TP    IRV KNLRVC
Sbjct: 824 VLR-NTDQEYKEQALCSHSEKLAIVYGLMHTPYRNPIRVYKNLRVC 868



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 119/396 (30%), Positives = 204/396 (51%), Gaps = 18/396 (4%)

Query: 20  NTPNALSLLPRC---TSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N    LS+L  C    S +  K+IHA  I++  Q+D+ V T L+N   +     S++ A 
Sbjct: 29  NEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVK---CGSIDDAQ 85

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
           L+FD++ E +++ +  M  G +       A   F+++   G +P+ Y++ S+L A A  G
Sbjct: 86  LIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAG 145

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
             ALE  K++H  A+  GL  +L V   L+++YA+   ++ AR +F+ + E  + S+  +
Sbjct: 146 --ALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVM 203

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL--LGSLDLGKWIHEYIKKY 254
           I   A+  R  EA SLF +++     P   T LS L++ A+   G+L+  K +H++  K 
Sbjct: 204 IGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKA 263

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
           G    ++V  ALI M+AKCG +DDA  VFD M  +D  +W+AMI   A +G GH++  +F
Sbjct: 264 GFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIF 323

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD---KYGIVPGIKHYGCMVDL 371
            +M +    PD  T+L LL     TG     W +   +     + G+V  ++     V +
Sbjct: 324 LKMQQEGFVPDSTTYLSLLNTHVSTG----AWEWVKEVHKHAVEVGLVSDLRVGSAFVHM 379

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
             R G +D+A    D+L +++    W  ++   +  
Sbjct: 380 YIRCGSIDDAQLIFDKLAVRNVTT-WNAMIGGVAQQ 414



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 121/487 (24%), Positives = 233/487 (47%), Gaps = 27/487 (5%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           +K++H+  +   L  DL V   L++   +   + S++ A ++FD + E DI  +  M  G
Sbjct: 150 VKEVHSHAVNAGLALDLRVGNALVHMYAK---SGSIDDARVVFDGMVERDIFSWTVMIGG 206

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
            ++      A  LF+++   G LP+  ++ S+L A A     ALE  K++H  A K G  
Sbjct: 207 LAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFI 266

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
           S+L V   LI++YA+C  ++ AR +F+ + +  V+S+NA+I   A++   +EA ++F ++
Sbjct: 267 SDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKM 326

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           Q+    P   T LS L++    G+ +  K +H++  + GL   ++V +A + M+ +CG +
Sbjct: 327 QQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSI 386

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           DDA  +FD ++ ++   W+AMI   A    G +++ +F +M +    PD  TF+ +L A 
Sbjct: 387 DDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSA- 445

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPG---IKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
               + +E   +   +   Y I  G   ++    +V +  + G    A +  D++ ++  
Sbjct: 446 ---NVGEEALEWVKEVH-SYAIDAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDM-VERN 500

Query: 394 PILWRTLLSSCSSHN----NLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDY 449
              W  ++S  + H        L  Q++      D +    YV + + CA  G  E V  
Sbjct: 501 VTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDAT---TYVSILSACASTGALEWVKE 557

Query: 450 LRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPD 509
           +     + G++     S + V N +   ++  G      D ++  D++++       V  
Sbjct: 558 VHSHAVNAGLV-----SDLRVGNALVHMYAKCGS---VDDARRVFDDMLERDVYSWTVMI 609

Query: 510 TSLVHHG 516
             L  HG
Sbjct: 610 GGLAQHG 616



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 123/484 (25%), Positives = 225/484 (46%), Gaps = 35/484 (7%)

Query: 93  MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
           M  GY+       A+ ++ ++   G  P++ ++ S+LKAC      +L+ GK++H   I+
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCS--PVSLKWGKKIHAHIIQ 58

Query: 153 LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL 212
            G  S++ V T L+N+Y +C  ++ A+ IF+ + E  V+S+  +I   A   R  EA   
Sbjct: 59  SGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHR 118

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           F ++Q     P   T +S L++ A  G+L+  K +H +    GL   ++V  AL+ M+AK
Sbjct: 119 FLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAK 178

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
            G +DDA  VFD M  +D  +W+ MI   A HG+G ++  +F +M +    P+  T+L +
Sbjct: 179 SGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSI 238

Query: 333 LYACSHTGLVDEGW-NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIK 391
           L A + T      W    +    K G +  ++    ++ +  + G +D+A    D +  +
Sbjct: 239 LNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDR 298

Query: 392 STPILWRTLLSSCS----SHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447
              I W  ++   +     H    +  ++ +  F  D +    Y+ L N     G WE V
Sbjct: 299 DV-ISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDST---TYLSLLNTHVSTGAWEWV 354

Query: 448 DYLRKLMKDRGV---LKVPG--------CSSIEVNNVVREFFSGDGVHSYSTDL-----Q 491
             + K   + G+   L+V          C SI+   ++ +  +   V +++  +     Q
Sbjct: 355 KEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQ 414

Query: 492 KALDE---LVKELKMVGYVPD-TSLVH--HGDMEDEEKEIALRYHSEKLAITFGLLNTPP 545
           K   E   L  +++  G+ PD T+ V+    ++ +E  E     HS   AI  GL++   
Sbjct: 415 KCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHS--YAIDAGLVDLRV 472

Query: 546 GTTI 549
           G  +
Sbjct: 473 GNAL 476


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 193/551 (35%), Positives = 322/551 (58%), Gaps = 15/551 (2%)

Query: 16  KLCTNTPNALS---LLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTT 69
           +L   +P++ +   LL  C     L+    +HA   +   + D+ V   LI    +    
Sbjct: 111 QLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAK---C 167

Query: 70  SSMEHAHLLFDRIPEPD--IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPS 127
             +  A  +F+ +P P+  IV +  +   Y+++  P+ A+ +F ++    + PD  +  S
Sbjct: 168 RRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVS 227

Query: 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE 187
           +L A  C+  + LE+G+ +H   +K+GL +   +  +L  +YA+C  V  A+ +F+ +  
Sbjct: 228 VLNAFTCL--QDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKS 285

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
           P ++ +NA+I+ YA++    +A+ LF E+  ++++P  +++ SA+S+CA +GSL+  +W+
Sbjct: 286 PNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWM 345

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQG 307
            EY+ +      V +++ALIDM AKCG ++ A SVFD    +D   WSAMIV Y  HGQ 
Sbjct: 346 DEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQA 405

Query: 308 HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367
            ++I ++  M +  V P+++TFLGLL AC+H+G+V EGW +F  M D + I P  +HY C
Sbjct: 406 REAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMAD-HKINPQQQHYAC 464

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
           ++DLLGRAG LD+AY  I  +P++    +W  LLS+C  H ++ L K   +++F +D S+
Sbjct: 465 IIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSN 524

Query: 428 GGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYS 487
            G YV LSNL A A  W+ V  +R  MK++G+ K  GCS +EV   +  F  GD  H   
Sbjct: 525 TGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSHPRY 584

Query: 488 TDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGT 547
            ++++ ++ +   LK  G+V +     H D+ DEE E  L  HSE++ I +GL++TP GT
Sbjct: 585 EEIERQVEWIESRLKEGGFVANKDASLH-DLNDEEAEETLCSHSERITIAYGLISTPQGT 643

Query: 548 TIRVVKNLRVC 558
           T+R+ KNLR C
Sbjct: 644 TLRITKNLRAC 654



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 131/431 (30%), Positives = 220/431 (51%), Gaps = 23/431 (5%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP 85
           SL+   T    L+QIHA  +   LQ    ++TKLI+    + +   +  A  +FD +P P
Sbjct: 26  SLIDSSTHKAQLRQIHARLLVLGLQFSGFLITKLIH---ASSSYGDITFARQVFDDLPRP 82

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
            +  +N + RGYSR+     A+ ++ ++  + + PD ++FP LLKAC   G   L+ G+ 
Sbjct: 83  QVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACG--GLSHLQMGRF 140

Query: 146 LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP--CVVSYNAIITAYARS 203
           +H    +LG  ++++V   LI LYA+C  +  AR +FE +  P   +VS+ AI++AYA++
Sbjct: 141 VHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQN 200

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
             P EAL +F ++++ ++KP  V ++S L++   L  L+ G+ IH  + K GL+    + 
Sbjct: 201 GEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLL 260

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
            +L  M+AKCG++  A  +FD M   +   W+AMI  YA +G    +I +F EM+   V 
Sbjct: 261 ISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVR 320

Query: 324 PDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
           PD I+    + AC+  G +++  W   Y  R  Y     I     ++D+  + G + E  
Sbjct: 321 PDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFIS--SALIDMFAKCGSV-ECA 377

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE--RIFELDDSHGGDYVILSNLCA- 439
           R + +  +    ++W  ++     H   G A++ I   R  E D  H  D   L  L A 
Sbjct: 378 RSVFDRTLDRDVVVWSAMIVGYGLH---GQAREAISLYRAMERDGVHPNDVTFLGLLIAC 434

Query: 440 ------RAGRW 444
                 R G W
Sbjct: 435 NHSGMVREGWW 445



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 170/342 (49%), Gaps = 17/342 (4%)

Query: 115 NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174
           NSG+  D + + SL+ +     +    + +Q+H   + LGL  + ++ T LI+  +   D
Sbjct: 15  NSGIHSDSF-YASLIDS-----STHKAQLRQIHARLLVLGLQFSGFLITKLIHASSSYGD 68

Query: 175 VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSS 234
           +  AR++F+++  P V  +NAII  Y+R++   +AL ++ ++Q   + P   T    L +
Sbjct: 69  ITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKA 128

Query: 235 CALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN--MSGKDTQ 292
           C  L  L +G+++H  + + G +  V V   LI ++AKC RL  A +VF+   +  +   
Sbjct: 129 CGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIV 188

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
           +W+A++ AYA +G+  +++ +F +M K  V PD +  + +L A +    +++G +   S+
Sbjct: 189 SWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASV 248

Query: 353 RDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGL 412
             K G+         +  +  + G++  A    D++      ILW  ++S  + +   G 
Sbjct: 249 M-KMGLETEPDLLISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAMISGYAKN---GF 303

Query: 413 AKQVIERIFEL--DDSHGGDYVILSNL--CARAGRWEDVDYL 450
           AK  I+   E+   D       I S +  CA+ G  E   ++
Sbjct: 304 AKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWM 345


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 202/528 (38%), Positives = 303/528 (57%), Gaps = 12/528 (2%)

Query: 34   FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM 93
             R  +Q+HA ++K     + +VLT L++   +      +  A  +FD +P P  V +  +
Sbjct: 566  LRAGEQLHARSLKLPSHTNPHVLTSLLSLYAK---CGLLHRAQRVFDEMPHPSTVPWTAL 622

Query: 94   ARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL 153
               Y  +     A+ +      +G+ PD ++   +L ACA +    L  G+ +   A + 
Sbjct: 623  ITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIAD--LATGETVWRAAEQE 680

Query: 154  GLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLF 213
            G+  +++V T  ++LY +C ++  AR +F+ +     V++ A++  YA +  P EAL LF
Sbjct: 681  GVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLF 740

Query: 214  RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK---VNTALIDMH 270
              +Q   +KP    +  ALS+C  LG+LDLG+   + I+    D+++    + TALIDM+
Sbjct: 741  LAMQAEGMKPDCYAVAGALSACTRLGALDLGR---QAIRMVDWDEFLDNPVLGTALIDMY 797

Query: 271  AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
            AKCG   +A  VF  M  KD   W+AMI+     G    +  +  +M K+ V  ++ TF+
Sbjct: 798  AKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFI 857

Query: 331  GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
            GLL +C+HTGL+ +G  YF++M   Y I P I+HYGCMVDLL RAG L EA++ +D++P+
Sbjct: 858  GLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPM 917

Query: 391  KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL 450
             +  ++   LL  C  H N  LA+ V++++  L+  + G+YV+LSN+ +  GRWED   L
Sbjct: 918  PANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKL 977

Query: 451  RKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT 510
            R  MK +GV KVP CS +E    V EF  GD  H  S  + K LDEL  E+K +GY P T
Sbjct: 978  RLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTT 1037

Query: 511  SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             +V   D+EDEEKE  L +HSEKLAI F LL T PG TIRV KNLRVC
Sbjct: 1038 EVVMF-DVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVC 1084



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 143/282 (50%), Gaps = 3/282 (1%)

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179
           P   + P  LK+ + +    L  G+QLH  ++KL  ++N +V T+L++LYA+C  +  A+
Sbjct: 547 PSHLTIPIALKSASRL-PHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQ 605

Query: 180 RIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG 239
           R+F+ +  P  V + A+ITAY  +    EA+ + R      ++P   T +  L++CA + 
Sbjct: 606 RVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIA 665

Query: 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIV 299
            L  G+ +    ++ G+ + V V TA +D++ KCG +  A  VFD M  KD  AW AM+ 
Sbjct: 666 DLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVG 725

Query: 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359
            YA++G   +++ +F  M    + PD     G L AC+  G +D G      M D    +
Sbjct: 726 GYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLG-RQAIRMVDWDEFL 784

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
                   ++D+  + G   EA+    ++  K   I+W  ++
Sbjct: 785 DNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDI-IVWNAMI 825


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 194/520 (37%), Positives = 307/520 (59%), Gaps = 40/520 (7%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           QIH   +K  L  +L +   L++   +      ++ A  + D +P  D+V +N+M  GY+
Sbjct: 158 QIHGAVVKLGLDMNLYIGNGLVSMYGK---CKWLDAARRVLDEMPGRDMVSWNSMVAGYA 214

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
           ++     A+ L  E+ +  L PD  +  SLL A                           
Sbjct: 215 QNGRFNDALKLCREMEDLKLKPDAGTMGSLLPA--------------------------- 247

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
             V  T       C +V   + +F  + E  ++S+N +I  Y  ++ PNEA+ L+ ++Q 
Sbjct: 248 --VTNT------SCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQV 299

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
             ++P  V++ S L +C  L +  LG+ IHEY+++  L   + +  ALIDM+AKCG L +
Sbjct: 300 HGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKE 359

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A +VFD M  +D  +W++MI AY   GQG  ++ +F++M  +  +PD I F+ +L ACSH
Sbjct: 360 ARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSH 419

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
            GLVDEG  Y +++  +YGI PGI+HY CMVDLLGRAG++DEAY    ++P++    +W 
Sbjct: 420 AGLVDEG-RYCFNLMAEYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWG 478

Query: 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458
           +LLS+C  ++++ +A    + +F+L     G YV+LSN+ A+AGRW+DV+ +R +M  +G
Sbjct: 479 SLLSACRVYSSMNIALLAADHLFQLAPEQSGYYVLLSNIYAKAGRWQDVETVRSIMNSKG 538

Query: 459 VLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDM 518
           + K+PG S++E+N+ V  F +GD  H+ S ++ KAL  LV  +K +GY+P+T    H D+
Sbjct: 539 IKKIPGNSNVEINDHVYTFLAGDQSHTQSKEIYKALGVLVGRMKELGYMPETDSALH-DV 597

Query: 519 EDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           E+E+KE  L  HSEKLAI F +LNT PG+TIR+ KN+RVC
Sbjct: 598 EEEDKECHLAVHSEKLAIVFAILNTKPGSTIRITKNIRVC 637



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 104/197 (52%), Gaps = 1/197 (0%)

Query: 144 KQLHC-FAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           K+LH    I   L+ N  +   L+  YA C +    R IF+ I++  VV +N +I +Y  
Sbjct: 55  KKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVN 114

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
           +    +AL +F+ +  +   P + T    L +C++ G+L +G  IH  + K GLD  + +
Sbjct: 115 NGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYI 174

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
              L+ M+ KC  LD A  V D M G+D  +W++M+  YA +G+ + ++ +  EM   ++
Sbjct: 175 GNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKL 234

Query: 323 SPDEITFLGLLYACSHT 339
            PD  T   LL A ++T
Sbjct: 235 KPDAGTMGSLLPAVTNT 251


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 195/542 (35%), Positives = 312/542 (57%), Gaps = 12/542 (2%)

Query: 22  PNALS---LLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PN  +   +L  CT  R +   +QIH++++KT  ++D+ V   LI+  ++      +E A
Sbjct: 343 PNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSK---YGWLEKA 399

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
             + + + E D+V + +M  GY + +    A+  F E+   G+ PD+    S +  CA  
Sbjct: 400 RRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCA-- 457

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
           G  A+ +G Q+H      G + ++ +   L+NLYA C  +  A   FE +     ++ N 
Sbjct: 458 GINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNG 517

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +++ +A+S    EAL +F  + +  +K    T +SALS+ A L  +  GK IH  + K G
Sbjct: 518 LVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTG 577

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
                +V  ALI ++ KCG  +DA   F  MS ++  +W+ +I + + HG+G +++ +F+
Sbjct: 578 HSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFD 637

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
           +M K  + P+++TF+G+L ACSH GLV+EG +YF SM D+YGI P   HY C++D+ GRA
Sbjct: 638 QMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRA 697

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
           G+LD A +FI+E+PI +  ++WRTLLS+C  H N+ + +   + + EL+      YV+LS
Sbjct: 698 GQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLS 757

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           N  A   +W + D +RK+M+DRGV K PG S IEV NVV  FF GD +H  +  +   L 
Sbjct: 758 NAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLA 817

Query: 496 ELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNL 555
            +   +  VGY  +   + H D E E ++     HSEKLA+TFGL++ PP   +RV+KNL
Sbjct: 818 VINDRVAKVGYKQEKYHLFH-DKEQEGRDPTDLVHSEKLAVTFGLMSLPPCMPLRVIKNL 876

Query: 556 RV 557
           RV
Sbjct: 877 RV 878



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/410 (28%), Positives = 200/410 (48%), Gaps = 14/410 (3%)

Query: 21  TPNALS-LLPRCTS---FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           TP  LS +L  CT    F   + IHA   K    +++ V   +I    +     S   A 
Sbjct: 142 TPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLR---CGSFRLAE 198

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +F  +P  D V FNT+  G+++      A+ +F E+  SGL PD  +  SLL ACA +G
Sbjct: 199 RVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLG 258

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
              L++G QLH +  K G++S+  +  +L++LY +C DVE A  IF +     VV +N +
Sbjct: 259 D--LQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLM 316

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           + A+ + +   ++  LF ++Q   ++P   T    L +C     +DLG+ IH    K G 
Sbjct: 317 LVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGF 376

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
           +  + V+  LIDM++K G L+ A  V + +  KD  +W++MI  Y  H     ++  F+E
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKE 436

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M K  + PD I     +  C+    + +G    ++     G    +  +  +V+L  R G
Sbjct: 437 MQKCGIWPDNIGLASAISGCAGINAMRQGLQ-IHARIYVSGYSGDVSIWNALVNLYARCG 495

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
           R+ EA+   +E+ +K   I    L+S  +     GL ++ ++    +D S
Sbjct: 496 RIREAFSSFEEMELKDG-ITGNGLVSGFAQS---GLHEEALKVFMRMDQS 541



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 183/369 (49%), Gaps = 7/369 (1%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           +IHA  +   L     V   LI+  ++N        A  +F+ +   D V +  M  GY+
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLP---ARRVFEELSARDNVSWVAMLSGYA 119

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
           ++     A+ L+ ++  +G++P  Y   S+L +C    AE   +G+ +H    K G  S 
Sbjct: 120 QNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSC--TKAELFAQGRLIHAQGYKHGFCSE 177

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
           ++V   +I LY  C     A R+F ++     V++N +I+ +A+      AL +F E+Q 
Sbjct: 178 IFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQF 237

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
             L P  VT+ S L++CA LG L  G  +H Y+ K G+     +  +L+D++ KCG ++ 
Sbjct: 238 SGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVET 297

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A+ +F++    +   W+ M+VA+       KS  +F +M  A + P++ T+  +L  C+ 
Sbjct: 298 ALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTC 357

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
           T  +D G    +S+  K G    +   G ++D+  + G L++A R ++ L  K   + W 
Sbjct: 358 TREIDLG-EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDV-VSWT 415

Query: 399 TLLSSCSSH 407
           ++++    H
Sbjct: 416 SMIAGYVQH 424


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 203/538 (37%), Positives = 316/538 (58%), Gaps = 11/538 (2%)

Query: 26  SLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           +LL  C   R L++   +HA  IKT       + T+L+ F  +      +E A  + D +
Sbjct: 56  ALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGK---CDCLEDARKVLDEM 112

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           PE ++V +  M   YS++     A+ +F E++ S   P++++F ++L +C  + A  L  
Sbjct: 113 PEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSC--IRASGLAL 170

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           GKQ+H   +K   +S+++V ++L+++YA+   +E AR IFE + E  VVS  AII  YA+
Sbjct: 171 GKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQ 230

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
                EAL +F+ LQ   ++P  VT  S L++ + L  LD GK  H ++ +  L  Y  +
Sbjct: 231 LGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVL 290

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM-KAQ 321
             +LIDM++KCG L  A  +FDNM  +   +W+AM+V Y+ HG G + + +F  M  + +
Sbjct: 291 QNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKR 350

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSM-RDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
           V PD +T L +L  CSH  + D G + +  M   +YGI P  +HYGC+VD+LGRAGR+DE
Sbjct: 351 VKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDE 410

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           A+ FI  +P K T  +  +LL +C  H ++ + + V  R+ E++  + G+YVILSNL A 
Sbjct: 411 AFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYAS 470

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
           AGRWEDV+ +R +M  + V K PG S I+    +  F + D  H    ++   + E+  +
Sbjct: 471 AGRWEDVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIK 530

Query: 501 LKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +K  GYVPD S V + D+++E+KE  L  HSEKLA+TFGL+ T  G  IRV KNLR+C
Sbjct: 531 MKQAGYVPDISCVLY-DVDEEQKEKMLLGHSEKLALTFGLITTGEGIPIRVFKNLRIC 587


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 191/520 (36%), Positives = 308/520 (59%), Gaps = 6/520 (1%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           Q H   +K+ L     V   LI   ++    S ++ A  ++  +P  D+  +N +  G  
Sbjct: 150 QCHGYALKSGLVFHQYVKNALICMYSRR---SDVKGAMSVWYEVPGLDVFSYNIIINGLL 206

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
            +  P  A+ +   +++  ++ D+ ++ +    C+ +  + L  G Q+HC   + G   +
Sbjct: 207 ENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHL--KDLRLGLQVHCRMFRTGAEYD 264

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
            +V + +I++Y +C ++  AR++F  +    VVS+ AI+ AY+++    EAL+ F E++ 
Sbjct: 265 SFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEV 324

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
             L P + T    L+SCA + +L  GK +H  IKK G + ++ V  ALI+M++K G ++ 
Sbjct: 325 DGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEA 384

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A  VF  M  +D+  WSAMI   + HG G +++++F+EM+ A+  P  +TF+G+L AC+H
Sbjct: 385 AHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAH 444

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
            G V EG+ Y   +  + GI PG++HY C+V LL +AGRLDEA  F+   P+K   + WR
Sbjct: 445 LGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWR 504

Query: 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458
           TLLS+C  H N GL K+V E + ++D    G Y++LSN+ A+A RW+ V  +RKLM++R 
Sbjct: 505 TLLSACHVHQNYGLGKKVAELVLQMDPGDVGTYILLSNMYAKAKRWDGVVKIRKLMRERN 564

Query: 459 VLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDM 518
           V K PG S IE+ N +  F S    H  S  + + + EL+  ++ +GYVPD + V H D+
Sbjct: 565 VKKEPGASWIEIRNSIHVFVSEGKTHPESNQIYEKVQELLTMIRPMGYVPDIAAVFH-DV 623

Query: 519 EDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           EDE+K   + YHSEKLAI +GL+ TP G  IRV+KNLR+C
Sbjct: 624 EDEQKREYVSYHSEKLAIAYGLMKTPSGAPIRVIKNLRMC 663



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 115/428 (26%), Positives = 214/428 (50%), Gaps = 14/428 (3%)

Query: 38  KQIHAVTIKTHLQNDLNVL--TKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMAR 95
           K IHA  I T+     N++    LIN   +      +  A +LFD + + ++V +  +  
Sbjct: 45  KMIHAHLIITNQATKDNIVQVNSLINLYAK---CDQIMVARILFDGMRKRNVVSWGALMA 101

Query: 96  GYSRSKTPIRAIFLFVELLNSGLL-PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
           GY  +   +  + LF  +++   + P++Y F +++ +C+  G   + EG Q H +A+K G
Sbjct: 102 GYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQ--VVEGWQCHGYALKSG 159

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           L  + YV   LI +Y+  SDV+ A  ++  +    V SYN II     +  P+EAL +  
Sbjct: 160 LVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLD 219

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
            + +  +   +VT ++A   C+ L  L LG  +H  + + G +    V++A+IDM+ KCG
Sbjct: 220 RMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCG 279

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
            + +A  VF+ +  K+  +W+A++ AY+ +G   +++  F EM    + P+E TF  LL 
Sbjct: 280 NILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLN 339

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           +C+    +  G    ++   K G    I     ++++  ++G ++ A++   E+  + + 
Sbjct: 340 SCAGISALGHG-KLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDS- 397

Query: 395 ILWRTLLSSCSSHNNLGLAKQVI--ERIFELDDSHGGDYVILSNLCARAGR-WEDVDYLR 451
           I W  ++    SH+ LG    V+  E +   +  H   +V + + CA  G   E   YL 
Sbjct: 398 ITWSAMICGL-SHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLN 456

Query: 452 KLMKDRGV 459
           +LMK  G+
Sbjct: 457 QLMKQTGI 464


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 182/473 (38%), Positives = 285/473 (60%), Gaps = 3/473 (0%)

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
           D V +N++  G  R      A+  F ++ +  +  D+Y+ PS+L + A +  + ++    
Sbjct: 5   DEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASM--KVMQNAIS 62

Query: 146 LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSR 205
           +HC  IK G  +   V   LI++YA+   ++ A  +F  + +  VVS+ +++T Y+ +  
Sbjct: 63  VHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGS 122

Query: 206 PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTA 265
             EA+ LF +++   + P  + + S LS+CA L  +D G+ IH  + K GL+  + V+ +
Sbjct: 123 YEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNS 182

Query: 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
           L+ M+AKCG + DA   FDNM  +D  +W+A+IV YA +G+G  S+  +++M+     PD
Sbjct: 183 LVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPD 242

Query: 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI 385
            ITF+GLL+ACSH GL+  G  YF +M   YGI PG +HY CM+DLLGR+G+L EA   +
Sbjct: 243 YITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLL 302

Query: 386 DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWE 445
           +++ +    ++W+ LL++C  H  L L +   + +FEL+  +   YV+LSN+ + AG+WE
Sbjct: 303 NQMVVAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWE 362

Query: 446 DVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVG 505
           D   +R+LM+ RG+ K PG S IE N+ V  F S D  H    ++   +DE++  +K  G
Sbjct: 363 DAARIRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEAG 422

Query: 506 YVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           YVPD S   H D +DE KE+ L YHSEKLA+ FGLL  P G  IR+ KNLRVC
Sbjct: 423 YVPDMSFALH-DTDDEVKELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVC 474



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 144/287 (50%), Gaps = 7/287 (2%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           P+ L+        +    +H + IKT  +    V   LI+   +      ++ A ++F +
Sbjct: 45  PSVLNSFASMKVMQNAISVHCLIIKTGFEAYKLVNNALIDMYAKQ---GKLDCAIMVFSK 101

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           + + D+V + ++  GYS + +   AI LF ++  SG+ PD  +  S+L ACA +    ++
Sbjct: 102 MVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAEL--TVMD 159

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G+Q+H   +K GL S+L V  +L+ +YA+C  +  A R F+N+    V+S+ A+I  YA
Sbjct: 160 FGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYA 219

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK-YGLDKYV 260
           ++ R   +L  + ++     KP  +T +  L +C+  G L  G+   E + K YG+    
Sbjct: 220 QNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGP 279

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNM-SGKDTQAWSAMIVAYATHGQ 306
           +    +ID+  + G+L +A  + + M    D   W A++ A   H +
Sbjct: 280 EHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVHKE 326


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 219/613 (35%), Positives = 329/613 (53%), Gaps = 67/613 (10%)

Query: 9   ITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINF------ 62
           I++  PP   T   N LS      +    ++IH+  +K  L + + V T L+N       
Sbjct: 134 ISERVPPSQFT-VSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGD 192

Query: 63  -----------CTQNPTT-----------SSMEHAHLLFDRIPEPDIVLFNTMARGYSRS 100
                        +N +T              E A   F+++P+ DIV +N+M  GYS+ 
Sbjct: 193 PVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQ 252

Query: 101 KTPIRAIFLFVELLNS-GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL---- 155
              + A+ +F ++LN   L PD+++  S+L ACA +  E L  GKQ+H + ++       
Sbjct: 253 GYNLEALVIFSKMLNEPSLKPDNFTLASILSACANL--EKLNIGKQIHAYILRAETETSG 310

Query: 156 -----------------------------NSNLYVCTTLINLYAECSDVEAARRIFENIS 186
                                        N N+   T+L++ Y +  +V+ AR IF  + 
Sbjct: 311 AVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLR 370

Query: 187 EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW 246
           +  VV++ A+I  Y ++   N+AL LFR +     +P   T+ + LS  + L  L+ GK 
Sbjct: 371 DRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQ 430

Query: 247 IHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHG 305
           IH    K G      V  ALI M+AK G ++ A  VFD  +GK +  +W++MI+A A HG
Sbjct: 431 IHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHG 490

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY 365
            G ++I +FE M+   + PD IT++G+L AC+H GLV++G  Y+  M + + I P + HY
Sbjct: 491 LGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHY 550

Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
            CM+DL GRAG L EAY FI+ +PI+   I W +LL+SC  H N  LAK   ER+  +D 
Sbjct: 551 ACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDP 610

Query: 426 SHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHS 485
            + G Y+ L+N+ +  G+WE+    RKLMKDRGV K  G S I + N V  F   D +H 
Sbjct: 611 GNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHP 670

Query: 486 YSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPP 545
              ++ K + E+ +E+K +G++PDT  V H D+E+E KE  L+YHSEKLAI FGLLNTP 
Sbjct: 671 QKDEIYKLMAEIWEEIKKMGFIPDTESVLH-DLEEEVKEQILKYHSEKLAIAFGLLNTPE 729

Query: 546 GTTIRVVKNLRVC 558
            T +R++KNLRVC
Sbjct: 730 NTALRIMKNLRVC 742



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 117/482 (24%), Positives = 210/482 (43%), Gaps = 108/482 (22%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           + +H   IK  L   + ++  L+ F  +   T S+  AH +FD +P      +NT+  GY
Sbjct: 30  RSVHCQIIKKGLHLGVYLMNNLMTFYAK---TGSLRFAHHVFDEMPLKSTFSWNTLISGY 86

Query: 98  SR--------------------SKTPI-----------RAIFLFVELLNSGLLPDDYSFP 126
           ++                    S T I            AI++F ++++  + P  ++  
Sbjct: 87  AKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVS 146

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD------------ 174
           ++L +CA    + L+ G+++H F +KLGL S + V T+L+N+YA+C D            
Sbjct: 147 NVLSSCA--ANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMT 204

Query: 175 -------------------VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLF-R 214
                               E A   FE + +  +VS+N++I+ Y++     EAL +F +
Sbjct: 205 VKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSK 264

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
            L E +LKP + T+ S LS+CA L  L++GK IH YI +   +    V  ALI M+AK G
Sbjct: 265 MLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSG 324

Query: 275 RLD---------------------------------DAVSVFDNMSGKDTQAWSAMIVAY 301
            ++                                  A  +F+ +  +D  AW+AMIV Y
Sbjct: 325 GVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGY 384

Query: 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYS-MRDKYGIVP 360
             +G  + ++ +F  M+     P+  T   +L   S   +++ G     S ++      P
Sbjct: 385 VQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTP 444

Query: 361 GIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
            + +   ++ +  + G ++ A R  D    K   + W +++ + + H   GL K+ I  +
Sbjct: 445 SVTN--ALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQH---GLGKEAI-NL 498

Query: 421 FE 422
           FE
Sbjct: 499 FE 500



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 162/380 (42%), Gaps = 68/380 (17%)

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G+ +HC  IK GL+  +Y+   L+  YA+   +  A  +F+ +      S+N +I+ YA+
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 203 S-----SRP--------------------------NEALSLFRELQERNLKPTDVTMLSA 231
                 SR                           + A+ +F ++    + P+  T+ + 
Sbjct: 89  QGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNV 148

Query: 232 LSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC------------------ 273
           LSSCA   +LD+G+ IH ++ K GL   V V T+L++M+AKC                  
Sbjct: 149 LSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNI 208

Query: 274 -------------GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM-K 319
                        G+ + A S F+ M  +D  +W++MI  Y+  G   +++++F +M+ +
Sbjct: 209 STWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNE 268

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
             + PD  T   +L AC++   ++ G   + Y +R +      + +   ++ +  ++G +
Sbjct: 269 PSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGN--ALISMYAKSGGV 326

Query: 379 DEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438
           + A   ++     +  I+     S    +  LG  K   E   +L D     +  +    
Sbjct: 327 EIARLIVEHNRTSNLNII--AFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGY 384

Query: 439 ARAGRWEDVDYLRKLMKDRG 458
            + G W D   L +LM + G
Sbjct: 385 VQNGLWNDALELFRLMVNEG 404


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 181/401 (45%), Positives = 258/401 (64%), Gaps = 1/401 (0%)

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           NL V T +I+ Y+    VE AR IF+ + E  +V ++A+I+ YA S +P EAL+LF E+Q
Sbjct: 13  NLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQ 72

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              +KP  VT+LS +S+CA LG LD  KWIH Y+ K GL   + VN ALIDM+AKCG L 
Sbjct: 73  VFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLG 132

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            A  VF+ M  ++  +W++MI A+A HG    ++  F +M    + P+ +TF+G+LYACS
Sbjct: 133 AARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACS 192

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H GLV+EG   F SM +++ I P  +HYGCMVDL GRA  L +A   ++ +P+    ++W
Sbjct: 193 HAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIW 252

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
            +L+++C  H    L +   +++ EL+  H G  V LSN+ A+  RW+DV  LR LMK R
Sbjct: 253 GSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQDVGELRNLMKQR 312

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           G+ K  GCS IE+NN V EF   D  H  +  + + LDE+VKELK+VGY P+T  V   D
Sbjct: 313 GISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVGYTPNTRSVLV-D 371

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +E+E K+  + +HSEKLA+ +GL+    G+ IR+VKNLRVC
Sbjct: 372 VEEEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVC 412



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 151/305 (49%), Gaps = 12/305 (3%)

Query: 52  DLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFV 111
           +L VLT +I+  ++      +E A L+FD++ E D+V ++ M  GY+ S  P  A+ LF 
Sbjct: 13  NLVVLTAMISGYSR---VGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFS 69

Query: 112 ELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE 171
           E+   G+ PD  +  S++ ACA +G   L+  K +H +  K GL   L V   LI++YA+
Sbjct: 70  EMQVFGIKPDQVTILSVISACARLGV--LDRAKWIHMYVDKNGLGGALPVNNALIDMYAK 127

Query: 172 CSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSA 231
           C ++ AAR +FE +    V+S+ ++I A+A     + AL  F ++++ N+KP  VT +  
Sbjct: 128 CGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGV 187

Query: 232 LSSCALLGSLDLGKWIHEYI-KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS-GK 289
           L +C+  G ++ G+     +  ++ +    +    ++D+  +   L DA+ + + M    
Sbjct: 188 LYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAP 247

Query: 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYF 349
           +   W +++ A   HG+         E    QV   E    G L   S+    D  W   
Sbjct: 248 NVVIWGSLMAACQIHGENE-----LGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQDV 302

Query: 350 YSMRD 354
             +R+
Sbjct: 303 GELRN 307


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 204/554 (36%), Positives = 320/554 (57%), Gaps = 24/554 (4%)

Query: 9   ITQSPPPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQ 65
            TQ     +  N     S+L  CT+       +QIH   +KT  Q ++ V + LI+   +
Sbjct: 426 FTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAK 485

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSF 125
           +     ++HA  +F R+ E D+V +  M  GY++      A+ LF E+ + G+  D+  F
Sbjct: 486 H---GKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGF 542

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
            S + ACA  G +AL++G+Q+H  +   G + +L +   L++LYA C  V  A   F+ I
Sbjct: 543 ASAISACA--GIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQI 600

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245
                VS+N++++ +A+S    EAL++F ++ +  L+    T  SA+S+ A + ++ +GK
Sbjct: 601 YAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGK 660

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
            IH  I+K G D   +V+ ALI ++AKCG +DD              +W++MI  Y+ HG
Sbjct: 661 QIHGMIRKTGYDSETEVSNALITLYAKCGTIDDI-------------SWNSMITGYSQHG 707

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY 365
            G +++ +FE+M +  V P+ +TF+G+L ACSH GLVDEG +YF SM + + +VP  +HY
Sbjct: 708 CGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHY 767

Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
            C+VDLLGR+G L  A RF++E+PI+   ++WRTLLS+C+ H N+ + +     + EL+ 
Sbjct: 768 ACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEP 827

Query: 426 SHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHS 485
                YV++SN+ A +G+W+  D  R++MKDRGV K PG S +EV+N V  FF+GD  H 
Sbjct: 828 KDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNHP 887

Query: 486 YSTDLQKALDELVKELKMVGYVPD-TSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTP 544
            +  + + L  L       GYVP   SL+   D E  +K+     HSE+LAI FGLL+  
Sbjct: 888 RADMIYEYLRGLDFRAAENGYVPRCNSLL--SDAEIRQKDPTEIIHSERLAIAFGLLSLT 945

Query: 545 PGTTIRVVKNLRVC 558
             T + V KNLRVC
Sbjct: 946 SSTPLYVFKNLRVC 959



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/378 (29%), Positives = 186/378 (49%), Gaps = 22/378 (5%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           LS   +   F   KQ+H + +K    ++  V   L+   +++   SS E    +F  + +
Sbjct: 258 LSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQ---IFHCMSQ 314

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
            D V +N++  G ++     RA+ LF ++      PD  +  SLL ACA VGA  L  GK
Sbjct: 315 RDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGA--LPNGK 372

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           Q H +AIK G+ S++ V  +L++LY +CSD++ A   F                 Y +  
Sbjct: 373 QFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF---------------LCYGQLD 417

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
             N++  +F ++Q   + P   T  S L +C  LG+ DLG+ IH  + K G    V V++
Sbjct: 418 NLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSS 477

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
            LIDM+AK G+LD A+ +F  +   D  +W+AMI  Y  H +  +++ +F+EM    +  
Sbjct: 478 VLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKS 537

Query: 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF 384
           D I F   + AC+    +D+G    ++     G    +     +V L  R G++ EAY  
Sbjct: 538 DNIGFASAISACAGIQALDQG-RQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAA 596

Query: 385 IDELPIKSTPILWRTLLS 402
            D++  K   + W +L+S
Sbjct: 597 FDQIYAKDN-VSWNSLVS 613



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 178/379 (46%), Gaps = 36/379 (9%)

Query: 32  TSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFN 91
            SFR ++QIHA TI +  ++   +   LI+   +N   SS   A  +F+ +   D V + 
Sbjct: 178 VSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSS---AKKVFENLKARDSVSWV 234

Query: 92  TMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAI 151
            M  G S++     A+ LF +++ S                AC   E  E GKQLH   +
Sbjct: 235 AMISGLSQNGYEEEAMLLFCQIVLS----------------ACTKVEFFEFGKQLHGLVL 278

Query: 152 KLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALS 211
           K G +S  YVC  L+ LY+   ++ +A +IF  +S+   VSYN++I+  A+    N AL+
Sbjct: 279 KQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALA 338

Query: 212 LFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271
           LF+++     KP  VT+ S LS+CA +G+L  GK  H Y  K G+   + V  +L+D++ 
Sbjct: 339 LFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYV 398

Query: 272 KCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLG 331
           KC  +  A   F               + Y      +KS  +F +M    + P++ T+  
Sbjct: 399 KCSDIKTAHEFF---------------LCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPS 443

Query: 332 LLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIK 391
           +L  C+  G  D G    ++   K G    +     ++D+  + G+LD A +    L  +
Sbjct: 444 ILKTCTTLGATDLG-EQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLK-E 501

Query: 392 STPILWRTLLSSCSSHNNL 410
           +  + W  +++  + H+  
Sbjct: 502 NDVVSWTAMIAGYTQHDKF 520



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 115/289 (39%), Gaps = 35/289 (12%)

Query: 155 LNS-NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLF 213
           LNS + Y    LI+ Y    D+  A  +F+ +    +  +N I   +           LF
Sbjct: 92  LNSRSFYDGLKLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLF 151

Query: 214 RELQERNLKPTDVTMLSALSSCALLG-SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           R +  +N++  +      L  C+    S    + IH      G +    +   LID++ K
Sbjct: 152 RRMLTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFK 211

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI----- 327
            G L  A  VF+N+  +D+ +W AMI   + +G   +++L+F +++ +  +  E      
Sbjct: 212 NGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGK 271

Query: 328 ---------TFLGLLYAC-------SHTGLVDEGWNYFYSM--RDKYGIVPGIKHYGCMV 369
                     F    Y C       S +G +      F+ M  RD+         Y  ++
Sbjct: 272 QLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVS-------YNSLI 324

Query: 370 DLLGRAGRLDEAYRFIDELPI---KSTPILWRTLLSSCSSHNNLGLAKQ 415
             L + G ++ A     ++ +   K   +   +LLS+C+S   L   KQ
Sbjct: 325 SGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQ 373


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 219/613 (35%), Positives = 329/613 (53%), Gaps = 67/613 (10%)

Query: 9   ITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINF------ 62
           I++  PP   T   N LS      +    ++IH+  +K  L + + V T L+N       
Sbjct: 134 ISERVPPSQFT-VSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGD 192

Query: 63  -----------CTQNPTT-----------SSMEHAHLLFDRIPEPDIVLFNTMARGYSRS 100
                        +N +T              E A   F+++P+ DIV +N+M  GYS+ 
Sbjct: 193 PVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQ 252

Query: 101 KTPIRAIFLFVELLNS-GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL---- 155
              + A+ +F ++LN   L PD+++  S+L ACA +  E L  GKQ+H + ++       
Sbjct: 253 GYNLEALAIFSKMLNEPSLKPDNFTLASILSACANL--EKLNIGKQIHAYILRAETETSG 310

Query: 156 -----------------------------NSNLYVCTTLINLYAECSDVEAARRIFENIS 186
                                        N N+   T+L++ Y +  +V+ AR IF  + 
Sbjct: 311 AVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLR 370

Query: 187 EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW 246
           +  VV++ A+I  Y ++   N+AL LFR +     +P   T+ + LS  + L  L+ GK 
Sbjct: 371 DRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQ 430

Query: 247 IHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHG 305
           IH    K G      V  ALI M+AK G ++ A  VFD  +GK +  +W++MI+A A HG
Sbjct: 431 IHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHG 490

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY 365
            G ++I +FE M+   + PD IT++G+L AC+H GLV++G  Y+  M + + I P + HY
Sbjct: 491 LGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHY 550

Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
            CM+DL GRAG L EAY FI+ +PI+   I W +LL+SC  H N  LAK   ER+  +D 
Sbjct: 551 ACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDP 610

Query: 426 SHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHS 485
            + G Y+ L+N+ +  G+WE+    RKLMKDRGV K  G S I + N V  F   D +H 
Sbjct: 611 GNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHP 670

Query: 486 YSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPP 545
              ++ K + E+ +E+K +G++PDT  V H D+E+E KE  L+YHSEKLAI FGLLNTP 
Sbjct: 671 QKDEIYKLMAEIWEEIKKMGFIPDTESVLH-DLEEEVKEQILKYHSEKLAIAFGLLNTPE 729

Query: 546 GTTIRVVKNLRVC 558
            T +R++KNLRVC
Sbjct: 730 NTALRIMKNLRVC 742



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 117/482 (24%), Positives = 211/482 (43%), Gaps = 108/482 (22%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           + +H   IK  L   + ++  L+ F  +   T S+  AH +FD +P      +NT+  GY
Sbjct: 30  RSVHCQIIKKGLHLGVYLMNNLMTFYAK---TGSLRFAHHVFDEMPLKSTFSWNTLISGY 86

Query: 98  SR--------------------SKTPI-----------RAIFLFVELLNSGLLPDDYSFP 126
           ++                    S T I            AI++F ++++  + P  ++  
Sbjct: 87  AKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVS 146

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD------------ 174
           ++L +CA    + L+ G+++H F +KLGL S + V T+L+N+YA+C D            
Sbjct: 147 NVLSSCA--ANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMT 204

Query: 175 -------------------VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLF-R 214
                               E A   FE + +  +VS+N++I+ Y++     EAL++F +
Sbjct: 205 VKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSK 264

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
            L E +LKP + T+ S LS+CA L  L++GK IH YI +   +    V  ALI M+AK G
Sbjct: 265 MLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSG 324

Query: 275 RLD---------------------------------DAVSVFDNMSGKDTQAWSAMIVAY 301
            ++                                  A  +F+ +  +D  AW+AMIV Y
Sbjct: 325 GVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGY 384

Query: 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYS-MRDKYGIVP 360
             +G  + ++ +F  M+     P+  T   +L   S   +++ G     S ++      P
Sbjct: 385 VQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTP 444

Query: 361 GIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
            + +   ++ +  + G ++ A R  D    K   + W +++ + + H   GL K+ I  +
Sbjct: 445 SVTN--ALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQH---GLGKEAI-NL 498

Query: 421 FE 422
           FE
Sbjct: 499 FE 500



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 161/380 (42%), Gaps = 68/380 (17%)

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G+ +HC  IK GL+  +Y+   L+  YA+   +  A  +F+ +      S+N +I+ YA+
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 203 S-----SRP--------------------------NEALSLFRELQERNLKPTDVTMLSA 231
                 SR                           + A+ +F ++    + P+  T+ + 
Sbjct: 89  QGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNV 148

Query: 232 LSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC------------------ 273
           LSSCA   +LD+G+ IH ++ K GL   V V T+L++M+AKC                  
Sbjct: 149 LSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNI 208

Query: 274 -------------GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM-K 319
                        G+ + A S F+ M  +D  +W++MI  Y+  G   +++ +F +M+ +
Sbjct: 209 STWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNE 268

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
             + PD  T   +L AC++   ++ G   + Y +R +      + +   ++ +  ++G +
Sbjct: 269 PSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGN--ALISMYAKSGGV 326

Query: 379 DEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438
           + A   ++     +  I+     S    +  LG  K   E   +L D     +  +    
Sbjct: 327 EIARLIVEHNRTSNLNII--AFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGY 384

Query: 439 ARAGRWEDVDYLRKLMKDRG 458
            + G W D   L +LM + G
Sbjct: 385 VQNGLWNDALELFRLMVNEG 404


>gi|220061997|gb|ACL79586.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 587

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 215/546 (39%), Positives = 332/546 (60%), Gaps = 23/546 (4%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKT-HLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           SLLPR  S R   Q HA  + + HL     +  + ++    +P  +++ HA LL   +P 
Sbjct: 12  SLLPRLASLRHYLQFHARLLTSGHLGAHPGLRARFLDRLALSPHPAALPHALLLLRSLPT 71

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP--DDYSFPSLLKACA-CVGAEALE 141
           P     N   RG + S  P R++ L    L   LLP  D  S    LKA A C  A    
Sbjct: 72  PATNDLNAALRGLAASPHPARSLLLLAGRLLPALLPRPDALSLSFALKASARCSDAHTT- 130

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
              QLH   ++LG+ +++ + TTL++ YA+C D+ +AR++F+ ++   V ++N+++   A
Sbjct: 131 --VQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLA 188

Query: 202 RSSRPNEALSLF-------RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           + + PN AL+LF       +EL  R  +P +VT+++ALS+CA +G L  G ++HE+ K++
Sbjct: 189 QGTEPNLALALFHRLANSFQELPSRE-EPNEVTIVAALSACAQIGLLKDGMYVHEFAKRF 247

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ--AWSAMIVAYATHGQGHKSIL 312
           GLD+ V+V  +LIDM++KCG L  A+ VF ++  +D    +++A I A++ HG G  ++ 
Sbjct: 248 GLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQTLVSYNAAIQAHSMHGHGGDALR 307

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           +F+EM   ++ PD +T+L +L  C+H+GLVD+G   F SMR    + P +KHYG +VDLL
Sbjct: 308 LFDEM-PTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMR----VAPNMKHYGTIVDLL 362

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432
           GRAGRL EAY  +  +P  +  +LW+TLL +   H  + LA+    ++ EL  +  GDYV
Sbjct: 363 GRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYV 422

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
           +LSN+ A   RW DV  +R  M+   V KVPG S  E++ V+ +F +GD  H    ++ +
Sbjct: 423 LLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYR 482

Query: 493 ALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVV 552
           AL+++V  +  +GY P+TS V H D+ +EEK+ AL YHSEKLAI FGL+ TPPG T+RV+
Sbjct: 483 ALEDIVSRISELGYEPETSNVLH-DIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVI 541

Query: 553 KNLRVC 558
           KNLR+C
Sbjct: 542 KNLRIC 547



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 148/299 (49%), Gaps = 24/299 (8%)

Query: 22  PNALSLL------PRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           P+ALSL        RC+      Q+HA+ ++  +  D+ +LT L++   +      +  A
Sbjct: 109 PDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAK---CGDLASA 165

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL------LPDDYSFPSLL 129
             +FD +   D+  +N++  G ++   P  A+ LF  L NS         P++ +  + L
Sbjct: 166 RKVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAAL 225

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS--E 187
            ACA +G   L++G  +H FA + GL+ N+ VC +LI++Y++C  +  A  +F +I   +
Sbjct: 226 SACAQIG--LLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPED 283

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
             +VSYNA I A++      +AL LF E+  R ++P  VT L+ L  C   G +D G  +
Sbjct: 284 QTLVSYNAAIQAHSMHGHGGDALRLFDEMPTR-IEPDGVTYLAVLCGCNHSGLVDDGLRV 342

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHG 305
              ++   +   +K    ++D+  + GRL +A     +M    D   W  ++ A   HG
Sbjct: 343 FNSMR---VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHG 398


>gi|125528144|gb|EAY76258.1| hypothetical protein OsI_04193 [Oryza sativa Indica Group]
          Length = 565

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 188/465 (40%), Positives = 296/465 (63%), Gaps = 9/465 (1%)

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRA---IFLFVELLNSGL-LPDDYSFPSLL 129
           +A  LFD+IPEP    +N++ R  S +     A   + ++  +L +G  LP+ ++    L
Sbjct: 76  YARNLFDQIPEPTAFCYNSLIRALSSAAGVAPAADTVLVYRRMLRAGSPLPNSFTLAFAL 135

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN-ISEP 188
           KAC+ V   AL EG+QLH  A + GL  + YV T L+NLYA+C +V  AR +F+  + + 
Sbjct: 136 KACSVV--PALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDK 193

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
            + +++A+I  Y+R    NEAL LFRE+Q  ++ P +VTM+S +S+CA  G+LDLG+W+H
Sbjct: 194 NLAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVH 253

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
            +I + G+   ++++TALIDM+AKCG ++ A  VFD M+ +DT+AWSAMIV  A HG   
Sbjct: 254 AFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVE 313

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
            ++ +F  M++ +V P+ +TF+G+L AC+H+GLV+EG  Y+ +M++  GI P +++YGCM
Sbjct: 314 VALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTMQE-LGIKPSMENYGCM 372

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428
           VDL  R+  LDEAY F+  + I    ++WRTLL +  + N   + +   +++ EL+  + 
Sbjct: 373 VDLFCRSSLLDEAYSFVTGMAIPPNSVIWRTLLVASKNSNRFDIVQSASKKLLELEPCNP 432

Query: 429 GDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYST 488
            +YV+LSNL A   +W+ V Y+RK MK+  V  V GCSSIE+N  + +F   D  H    
Sbjct: 433 ENYVLLSNLYASNSQWDRVSYMRKKMKENNVNVVAGCSSIEINGYLHKFVVSDDSHPEIK 492

Query: 489 DLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEK 533
           +++  L E+   +   G+ P T+ V H D+ +EEKE+AL  HSE+
Sbjct: 493 EIRLLLREIADRVVRAGHKPWTAAVLH-DVGEEEKEVALCEHSER 536


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 192/531 (36%), Positives = 300/531 (56%), Gaps = 47/531 (8%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           M+ A   F+ I   D+ ++N M  GY+      +A+ +F +++  G+ P+  +  S + A
Sbjct: 162 MDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSA 221

Query: 132 CACVGAEALEEGKQLHCFAIKLG-LNSNLYVCTTLINLYAECSDVEAARR---------- 180
           C       L  G+++H + IK+  L+S+L V  +L++ YA+C  VE ARR          
Sbjct: 222 CT--NLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDL 279

Query: 181 ---------------------------------IFENISEPCVVSYNAIITAYARSSRPN 207
                                            +F  +S   VV +N+II+A A+S R  
Sbjct: 280 VSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSV 339

Query: 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267
            AL L RE+   N++   VTM+SAL +C+ L +L  GK IH++I + GLD    +  +LI
Sbjct: 340 NALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLI 399

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
           DM+ +CG +  +  +FD M  +D  +W+ MI  Y  HG G  ++ +F++     + P+ I
Sbjct: 400 DMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHI 459

Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
           TF  LL ACSH+GL++EGW YF  M+ +Y + P ++ Y CMVDLL RAG+ +E   FI++
Sbjct: 460 TFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEK 519

Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447
           +P +    +W +LL +C  H N  LA+     +FEL+    G+YV+++N+ + AGRWED 
Sbjct: 520 MPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDA 579

Query: 448 DYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYV 507
             +R LMK+RGV K PGCS IEV   +  F  GD  H     +   ++ L  ++K +GYV
Sbjct: 580 AKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYV 639

Query: 508 PDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           PDT+ V   D++++EKE +L  HSEK+A+ FGL++T  GT +R++KNLRVC
Sbjct: 640 PDTNFVLQ-DVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVC 689



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 115/484 (23%), Positives = 213/484 (44%), Gaps = 67/484 (13%)

Query: 26  SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L +C     L+   Q+HA  +   +     + ++L+    Q   T  +E A  +FD++
Sbjct: 15  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQ---TGCVEDARRMFDKM 71

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
            E ++  +  +   Y         I LF  ++N G+ PD + FP + KAC+    +    
Sbjct: 72  SERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACS--ELKNYRV 129

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           GK ++ + + +G   N  V  ++++++ +C  ++ ARR FE I    V  +N +++ Y  
Sbjct: 130 GKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTS 189

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY-IKKYGLDKYVK 261
                +AL++FR++    +KP  +T+ SA+S+C  L  L  G+ IH Y IK   LD  + 
Sbjct: 190 KGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLL 249

Query: 262 VNTALIDMHAKC-------------------------------------------GRLDD 278
           V  +L+D +AKC                                            R+  
Sbjct: 250 VGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHI 309

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A SVF  +S +D   W+++I A A  G+   ++ +  EM  + V  + +T +  L ACS 
Sbjct: 310 ACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSK 369

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
              + +G    +    + G+         ++D+ GR G + ++ R  D +P +   + W 
Sbjct: 370 LAALRQG-KEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDL-VSWN 427

Query: 399 TLLSSCSSH----NNLGLAKQVIERIFELDDSHGGDYVILSNL---CARAGRWEDVDYLR 451
            ++S    H    + + L +Q   R   L  +H    +  +NL   C+ +G  E+     
Sbjct: 428 VMISVYGMHGFGMDAVNLFQQF--RTMGLKPNH----ITFTNLLSACSHSGLIEEGWKYF 481

Query: 452 KLMK 455
           K+MK
Sbjct: 482 KMMK 485



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 111/221 (50%), Gaps = 2/221 (0%)

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
           + S+L+ C       L  G Q+H   +  G++   ++ + L+ +Y +   VE ARR+F+ 
Sbjct: 13  YASILQKCR--KLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDK 70

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
           +SE  V S+ AI+  Y       E + LF  +    ++P          +C+ L +  +G
Sbjct: 71  MSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVG 130

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
           K +++Y+   G +    V  +++DM  KCGR+D A   F+ +  KD   W+ M+  Y + 
Sbjct: 131 KDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSK 190

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
           G+  K++ +F +M+   V P+ IT    + AC++  L+  G
Sbjct: 191 GEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHG 231



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 113/268 (42%), Gaps = 44/268 (16%)

Query: 19  TNTPNALSLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
            NT   +S LP C+    L+Q   IH   I+  L     +L  LI+   +     S++ +
Sbjct: 355 VNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGR---CGSIQKS 411

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
             +FD +P+ D+V +N M   Y      + A+ LF +    GL P+  +F +LL AC+  
Sbjct: 412 RRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHS 471

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
           G   +EEG +                       Y +    E A        +P V  Y  
Sbjct: 472 G--LIEEGWK-----------------------YFKMMKTEYAM-------DPAVEQYAC 499

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           ++   +R+ + NE L     +++   +P      S L +C +  + DL ++   Y+  + 
Sbjct: 500 MVDLLSRAGQFNETLEF---IEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYL--FE 554

Query: 256 LDKYVKVNTALI-DMHAKCGRLDDAVSV 282
           L+     N  L+ ++++  GR +DA  +
Sbjct: 555 LEPQSSGNYVLMANIYSAAGRWEDAAKI 582


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 201/558 (36%), Positives = 309/558 (55%), Gaps = 31/558 (5%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIK-THLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           S LP C+    L   +++HAV +K   L  +  V + L++    N   +S   A  +FD 
Sbjct: 287 SALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVAS---ARRVFDM 343

Query: 82  IPEP--DIVLFNTMARGYSRSKTPIRAIFLFVEL-LNSGLLPDDYSFPSLLKACACVGAE 138
           +PEP   + ++N M  GY+++     A+ LF  +   +G  P + +   +L ACA   +E
Sbjct: 344 VPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACA--RSE 401

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
                + +H + +K G+  N +V   L+++YA   +++ ARRIF  I    VVS+N +IT
Sbjct: 402 GFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLIT 461

Query: 199 AYARSSRPNEALSLFRELQ----------------ERNLKPTDVTMLSALSSCALLGSLD 242
                    EA  L  E+Q                     P ++T+++ L  CA L +  
Sbjct: 462 GCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPA 521

Query: 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYA 302
            GK IH Y  ++ L+  + V +AL+DM+AKCG L  + +VFD +  ++   W+ +I+AY 
Sbjct: 522 RGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYG 581

Query: 303 THGQGHKSILMFEEMMKA-QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG 361
            HG G +++ +F+EM    + +P+E+TF+  L ACSH+GLVD G   F+ M   +G+ P 
Sbjct: 582 MHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPT 641

Query: 362 IKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
              + C+VD+LGRAGRLDEAY  I  + P +     W +LL +C  H N+ L +   ER+
Sbjct: 642 PDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAERL 701

Query: 421 FELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSG 480
           FEL+      YV+L N+ + AG W+    +R  M+ +GV K PGCS IE++  +  F +G
Sbjct: 702 FELEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIELDGAIHRFMAG 761

Query: 481 DGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGL 540
           +  H  S ++   +D L + ++  GY PDTS V H D++++EK   LRYHSEKLAI FGL
Sbjct: 762 ESSHPASAEVHAHMDALWERMRREGYAPDTSCVLH-DVDEDEKAAMLRYHSEKLAIAFGL 820

Query: 541 LNTPPGTTIRVVKNLRVC 558
           L  PPG  IRV KNLRVC
Sbjct: 821 LRAPPGAAIRVAKNLRVC 838



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 161/350 (46%), Gaps = 23/350 (6%)

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP-DDYSFPSLLKACACV-GAEALEEG 143
           D V +N++       +   RA+    ++L  G      ++  S+L AC+ + G +    G
Sbjct: 132 DAVSYNSLISALCLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRLG 191

Query: 144 KQLHCFAIKLGL---NSNLYVCTTLINLYAECSDVEAARRIFENISEPC------VVSYN 194
           ++ H FA+K G        +    L+++YA    V+ A+ +F   +         VV++N
Sbjct: 192 REAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWN 251

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI-KK 253
            +I+   +  R  EA+ +  ++    ++P  VT  SAL +C+ L  L LG+ +H  + K 
Sbjct: 252 TMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKD 311

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ--AWSAMIVAYATHGQGHKSI 311
             L     V +AL+DM+A   ++  A  VFD +     Q   W+AMI  YA  G   +++
Sbjct: 312 ADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEAL 371

Query: 312 LMFEEM-MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD---KYGIVPGIKHYGC 367
            +F  M  +A  +P E T  G+L AC+ +    EG+    +M     K G+         
Sbjct: 372 ELFSRMEAEAGCAPSETTMSGVLPACARS----EGFAGKEAMHGYVVKRGMAGNRFVQNA 427

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
           ++D+  R G +D A R    +  +   + W TL++ C    +   A Q++
Sbjct: 428 LMDMYARLGEMDVARRIFAMIDPRDV-VSWNTLITGCVVQGHAAEAFQLV 476



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 129/301 (42%), Gaps = 21/301 (6%)

Query: 146 LHCFAIKLGL--NSNLYVCTTLINLYAECSDVEAARRIFENISEPC--VVSYNAIITAYA 201
           LH  A++  L    +  V   L+  YA C D++AA  +F   +      VSYN++I+A  
Sbjct: 85  LHAAALRRALLHRPSPAVGNALLTAYARCGDLDAALALFAATATELRDAVSYNSLISALC 144

Query: 202 RSSRPNEALSLFRE-LQERNLKPTDVTMLSALSSCALLGSLD---LGKWIHEYIKKYGLD 257
              +   AL   R+ L E     +  T++S L +C+ L   D   LG+  H +  K G  
Sbjct: 145 LFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFL 204

Query: 258 KYVKVN---TALIDMHAKCGRLDDAVSVFDNMS------GKDTQAWSAMIVAYATHGQGH 308
              +      AL+ M+A+ G +DDA S+F   +      G D   W+ MI      G+  
Sbjct: 205 DEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCA 264

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
           +++ +  +M+   V PD +TF   L ACS   ++  G      +     +         +
Sbjct: 265 EAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASAL 324

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPI-LWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
           VD+     ++  A R  D +P  S  + +W  ++     +   G+ ++ +E    ++   
Sbjct: 325 VDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMI---CGYAQAGMDEEALELFSRMEAEA 381

Query: 428 G 428
           G
Sbjct: 382 G 382


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 199/541 (36%), Positives = 316/541 (58%), Gaps = 18/541 (3%)

Query: 26   SLLPRCTSFRG----LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
            S+L  C+S  G      QIHA  +K  +  D  V T LI+  ++   +  ME A  LF  
Sbjct: 1012 SVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSK---SGKMEEAEFLFVN 1068

Query: 82   IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
                D+  +N M  GY  S    +A+ L++ +  SG   +  +  +  KA    G   L+
Sbjct: 1069 QDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAG--GLVGLK 1126

Query: 142  EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            +GKQ+    +K G N +L+V + ++++Y +C ++E+ARRIF  I  P  V++  +I+   
Sbjct: 1127 QGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCV 1186

Query: 202  RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY--GLDKY 259
             + +   AL  +  ++   ++P + T  + + +C+LL +L+ G+ IH    K     D +
Sbjct: 1187 ENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPF 1246

Query: 260  VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
            V   T+L+DM+AKCG ++DA  +F   +     +W+AMIV  A HG   +++  FEEM  
Sbjct: 1247 VM--TSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKS 1304

Query: 320  AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
              V+PD +TF+G+L ACSH+GLV E +  FYSM+  YGI P I+HY C+VD L RAGR+ 
Sbjct: 1305 RGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIR 1364

Query: 380  EAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439
            EA + I  +P +++  ++RTLL++C    +    K+V E++  L+ S    YV+LSN+ A
Sbjct: 1365 EAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYA 1424

Query: 440  RAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVK 499
             A +WE+V   R +M+   V K PG S +++ N V  F +GD  H  +  +   ++ ++K
Sbjct: 1425 AANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMK 1484

Query: 500  ELKMVGYVPDT--SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRV 557
             ++  GY+PDT  +LV   D+E+E+KE +L YHSEKLAI +GL+ TPP TT+RV+KNLRV
Sbjct: 1485 RIREEGYLPDTDFALV---DVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRV 1541

Query: 558  C 558
            C
Sbjct: 1542 C 1542



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 217/449 (48%), Gaps = 45/449 (10%)

Query: 38   KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
            KQIH + +++ L   ++V   LIN   +   T S+  A  +F ++ E D+V +NTM  G 
Sbjct: 926  KQIHGIVVRSGLDQVVSVGNCLINMYVK---TGSVSRARTVFWQMNEVDLVSWNTMISGC 982

Query: 98   SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            + S     ++ +FV+LL  GLLPD ++  S+L+AC+ +G        Q+H  A+K G+  
Sbjct: 983  ALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGG-GCHLATQIHACAMKAGVVL 1041

Query: 158  NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            + +V TTLI++Y++   +E A  +F N     + S+NA++  Y  S    +AL L+  +Q
Sbjct: 1042 DSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQ 1101

Query: 218  ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
            E   +   +T+ +A  +   L  L  GK I   + K G +  + V + ++DM+ KCG ++
Sbjct: 1102 ESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEME 1161

Query: 278  DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
             A  +F+ +   D  AW+ MI     +GQ   ++  +  M  ++V PDE TF  L+ ACS
Sbjct: 1162 SARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACS 1221

Query: 338  HTGLVDEGWN---------------YFYSMRDKYGIVPGIK---------------HYGC 367
                +++G                    S+ D Y     I+                +  
Sbjct: 1222 LLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNA 1281

Query: 368  MVDLLGRAGRLDEAYRFIDELPIKS-TP--ILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
            M+  L + G  +EA +F +E+  +  TP  + +  +LS+CS   + GL  +  E  + + 
Sbjct: 1282 MIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACS---HSGLVSEAYENFYSMQ 1338

Query: 425  DSHGGD-----YVILSNLCARAGRWEDVD 448
              +G +     Y  L +  +RAGR  + +
Sbjct: 1339 KIYGIEPEIEHYSCLVDALSRAGRIREAE 1367



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 158/322 (49%), Gaps = 9/322 (2%)

Query: 86   DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
            D++ +N     + +      A+  FV+++NS +  D  +F  +L   A  G   LE GKQ
Sbjct: 870  DVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVA--GLNCLELGKQ 927

Query: 146  LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSR 205
            +H   ++ GL+  + V   LIN+Y +   V  AR +F  ++E  +VS+N +I+  A S  
Sbjct: 928  IHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGL 987

Query: 206  PNEALSLFRELQERNLKPTDVTMLSALSSCALL-GSLDLGKWIHEYIKKYG--LDKYVKV 262
               ++ +F +L    L P   T+ S L +C+ L G   L   IH    K G  LD +  V
Sbjct: 988  EECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSF--V 1045

Query: 263  NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
            +T LID+++K G++++A  +F N  G D  +W+AM+  Y   G   K++ ++  M ++  
Sbjct: 1046 STTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGE 1105

Query: 323  SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
              ++IT      A      + +G     ++  K G    +     ++D+  + G ++ A 
Sbjct: 1106 RANQITLANAAKAAGGLVGLKQG-KQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESAR 1164

Query: 383  RFIDELPIKSTPILWRTLLSSC 404
            R  +E+P     + W T++S C
Sbjct: 1165 RIFNEIP-SPDDVAWTTMISGC 1185



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 107/201 (53%), Gaps = 4/201 (1%)

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC--VV 191
            + A  L  GK+ H   +  G + + ++   LI +Y++C  + +AR++F+   +    +V
Sbjct: 636 AIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLV 695

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           ++NAI++A+A  +R  +   LFR L+   +  T  T+      C L  S    + +H Y 
Sbjct: 696 TWNAILSAHADKAR--DGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYA 753

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            K GL   V V  AL++++AK GR+ +A  +FD M  +D   W+ M+ AY   G  ++++
Sbjct: 754 VKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEAL 813

Query: 312 LMFEEMMKAQVSPDEITFLGL 332
           L+F E  +  + PD++T   L
Sbjct: 814 LLFSEFNRTGLRPDDVTLCTL 834



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 90/412 (21%), Positives = 179/412 (43%), Gaps = 45/412 (10%)

Query: 2   ATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTK 58
           AT+ + P    PP  L  + P   S+L    +   L   K+ HA  + +    D  +   
Sbjct: 609 ATSTANPFI--PPAHLIHSIPQWFSILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNN 666

Query: 59  LINFCTQNPTTSSMEHAHLLFDRIPEP--DIVLFNTMARGYSRSKTPIRAIFLFVELLNS 116
           LI   T      S+  A  LFD  P+   D+V +N +   ++          LF  L  S
Sbjct: 667 LI---TMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHADKARD--GFHLFRLLRRS 721

Query: 117 GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVE 176
            +    ++   + K C    + +  E   LH +A+K+GL  +++V   L+N+YA+   + 
Sbjct: 722 FVSATRHTLAPVFKMCLLSASPSAAE--SLHGYAVKIGLQWDVFVAGALVNIYAKFGRIR 779

Query: 177 AARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236
            AR +F+ +    VV +N ++ AY  +    EAL LF E     L+P DVT+ +   +  
Sbjct: 780 EARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTL--ARV 837

Query: 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSA 296
           +    ++ +W  + +K YG   ++  +                        G D  AW+ 
Sbjct: 838 VKSKQNVLEWQLKQLKAYGTKLFMYDDD---------------------DDGSDVIAWNK 876

Query: 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKY 356
            +  +   G+  +++  F +M+ ++V+ D +TF+ +L   +    ++ G    + +  + 
Sbjct: 877 TLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELG-KQIHGIVVRS 935

Query: 357 GIVPGIKHYGCMVDLLGRAGRLDEA---YRFIDELPIKSTPILWRTLLSSCS 405
           G+   +    C++++  + G +  A   +  ++E+ + S    W T++S C+
Sbjct: 936 GLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVS----WNTMISGCA 983


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 194/524 (37%), Positives = 308/524 (58%), Gaps = 32/524 (6%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K +H++ IK+  +  +N    L++  ++      ++ A  +F+++ E ++V + +M  GY
Sbjct: 271 KAVHSLAIKSSFERRINFSNTLLDMYSK---CGDLDGALRVFEKMGERNVVSWTSMIAGY 327

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           +R      AI L  ++   G+  D  +  S+L ACA  G+  L+ GK +H +     + S
Sbjct: 328 TRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGS--LDNGKDVHDYIKANNMES 385

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           NL+VC  L+++YA+C  +EAA  +F  +    ++S+N +I                    
Sbjct: 386 NLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIG------------------- 426

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              LKP   TM   L +CA L +L+ GK IH YI + G      V  AL+D++ KCG L 
Sbjct: 427 --ELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLG 484

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            A  +FD +  KD  +W+ MI  Y  HG G+++I  F EM  A + PDE++F+ +LYACS
Sbjct: 485 LARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACS 544

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H+GL+++GW +FY M++ + I P ++HY CMVDLL R G L +AY F++ LPI     +W
Sbjct: 545 HSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIW 604

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             LL  C +++++ LA++V ER+FEL+  + G YV+L+N+ A A +WE+V  LR+ +  +
Sbjct: 605 GALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQ 664

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDG-VHSYSTDLQKALDELVKELKMVGYVPDT--SLVH 514
           G+ K PGCS IE+   V  F SG+   H +S +++  L ++ +++K  G+ P T  +L++
Sbjct: 665 GLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALIN 724

Query: 515 HGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             +M   +KE+AL  HSEKLA+ FGLL  PP  TIRV KNLRVC
Sbjct: 725 ADEM---QKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVC 765



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 178/355 (50%), Gaps = 30/355 (8%)

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
           E A  LFD++ + D++ +N+M  GY  +    R + ++ +++  G+  D  +  S+L  C
Sbjct: 202 ESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGC 261

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
           A  G  +L  GK +H  AIK      +    TL+++Y++C D++ A R+FE + E  VVS
Sbjct: 262 ANSGTLSL--GKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 319

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           + ++I  Y R  R + A+ L +++++  +K   V + S L +CA  GSLD GK +H+YIK
Sbjct: 320 WTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIK 379

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
              ++  + V  AL+DM+AKCG ++ A SVF  M  KD  +W+ MI              
Sbjct: 380 ANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI-------------- 425

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDL 371
                   ++ PD  T   +L AC+    ++ G   + Y +R+ Y     + +   +VDL
Sbjct: 426 -------GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVAN--ALVDL 476

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
             + G L  A    D +P K   + W  +++    H   G   + I    E+ D+
Sbjct: 477 YVKCGVLGLARLLFDMIPSKDL-VSWTVMIAGYGMH---GYGNEAIATFNEMRDA 527



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/326 (19%), Positives = 145/326 (44%), Gaps = 67/326 (20%)

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           ++ S+L+ CA  G ++  +GK++H       +  +  +   L++ YA C D++  RR+F+
Sbjct: 101 TYGSVLQLCA--GLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFD 158

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
            + +  V  +N +++ YA+     E++ LF+ + E+ ++                     
Sbjct: 159 TMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIE--------------------- 197

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303
           GK                             R + A  +FD +  +D  +W++MI  Y +
Sbjct: 198 GK-----------------------------RPESAFELFDKLCDRDVISWNSMISGYVS 228

Query: 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK 363
           +G   + + ++++MM   +  D  T + +L  C+++G +  G    +S+  K      I 
Sbjct: 229 NGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLG-KAVHSLAIKSSFERRIN 287

Query: 364 HYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS----SHNNLGLAKQVIER 419
               ++D+  + G LD A R  +++  ++  + W ++++  +    S   + L +Q+ + 
Sbjct: 288 FSNTLLDMYSKCGDLDGALRVFEKMGERNV-VSWTSMIAGYTRDGRSDGAIKLLQQMEKE 346

Query: 420 IFELDDSHGGDYVILSNL---CARAG 442
             +L      D V ++++   CAR+G
Sbjct: 347 GVKL------DVVAITSILHACARSG 366



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 2/133 (1%)

Query: 190 VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           V  YNA I  + +      A+ L    Q+  L+    T  S L  CA L S   GK +H 
Sbjct: 66  VTDYNAKILHFCQLGDLENAMELICMCQKSELETK--TYGSVLQLCAGLKSFTDGKKVHS 123

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
            IK   +     +   L+  +A CG L +   VFD M  K+   W+ M+  YA  G   +
Sbjct: 124 IIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKE 183

Query: 310 SILMFEEMMKAQV 322
           SI +F+ M++  +
Sbjct: 184 SICLFKIMVEKGI 196


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 198/537 (36%), Positives = 315/537 (58%), Gaps = 10/537 (1%)

Query: 26   SLLPRCTSF-RGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
            S+L  C+S   GL   +QIH   +KT    D  V T LI+  ++   +  ME A  LF  
Sbjct: 1010 SVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSK---SGKMEEAEFLFQN 1066

Query: 82   IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
              + D+  +N M  GY       +A+ LF  +  SG   D  +  +  KAC C+    L+
Sbjct: 1067 KDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCL--VLLD 1124

Query: 142  EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            +GKQ+H  AIK G +S+L+V + ++++Y +C D+  A  +F  IS P  V++ ++I+   
Sbjct: 1125 QGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCV 1184

Query: 202  RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
             +   ++AL ++  +++  + P + T  + + + + + +L+ G+ +H  + K        
Sbjct: 1185 DNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPF 1244

Query: 262  VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
            V T+L+DM+AKCG ++DA  +F  M+ ++   W+AM+V  A HG   +++ +F+ M    
Sbjct: 1245 VGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHG 1304

Query: 322  VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
            + PD ++F+G+L ACSH GL  E + Y +SM + YGI P I+HY C+VD LGRAG + EA
Sbjct: 1305 IEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEA 1364

Query: 382  YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
             + I+ +P K++  + R LL +C    ++   K+V  R+F L+      YV+LSN+ A A
Sbjct: 1365 DKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAA 1424

Query: 442  GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
             RW+DV   RK+MK + V K PG S I+V N++  F   D  H  +  +   ++E++K +
Sbjct: 1425 NRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTI 1484

Query: 502  KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +  GYVPDT  V   D+EDEEKE +L YHSEKLAI +GL++TP  TTIRV+KNLRVC
Sbjct: 1485 REDGYVPDTEFVLL-DVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVC 1540



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 229/428 (53%), Gaps = 16/428 (3%)

Query: 38   KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
            KQ+H + +K+ L +D++V   L+N  ++         A  +F+ +   D++ +N+M    
Sbjct: 924  KQVHGIAVKSGLDSDVSVANSLVNMYSK---MGCAYFAREVFNDMKHLDLISWNSMISSC 980

Query: 98   SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            ++S     ++ LF++LL+ GL PD ++  S+L+AC+ +  + L   +Q+H  A+K G  +
Sbjct: 981  AQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSL-IDGLNISRQIHVHALKTGNIA 1039

Query: 158  NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            + +V TTLI++Y++   +E A  +F+N  +  +  +NA++  Y   +   +AL LF  + 
Sbjct: 1040 DSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIH 1099

Query: 218  ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
            +   K   +T+ +A  +C  L  LD GK IH +  K G D  + VN+ ++DM+ KCG + 
Sbjct: 1100 KSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMV 1159

Query: 278  DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            +A  VF+ +S  D  AW++MI     +G   +++ ++  M +++V PDE TF  L+ A S
Sbjct: 1160 NAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASS 1219

Query: 338  HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
                +++G    ++   K   V        +VD+  + G +++AYR   ++ +++   LW
Sbjct: 1220 CVTALEQG-RQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIA-LW 1277

Query: 398  RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD-----YVILSNLCARAG-RWEDVDYLR 451
              +L   + H N   A++ +  +F+   SHG +     ++ + + C+ AG   E  +YL 
Sbjct: 1278 NAMLVGLAQHGN---AEEAVN-LFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLH 1333

Query: 452  KLMKDRGV 459
             +  D G+
Sbjct: 1334 SMPNDYGI 1341



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 162/312 (51%), Gaps = 8/312 (2%)

Query: 113  LLNSGLLPDDYSFPSLLKACACV-GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE 171
             +N   L  DY   +LL   A V G + LE GKQ+H  A+K GL+S++ V  +L+N+Y++
Sbjct: 892  FVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSK 951

Query: 172  CSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSA 231
                  AR +F ++    ++S+N++I++ A+SS   E+++LF +L    LKP   T+ S 
Sbjct: 952  MGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASV 1011

Query: 232  LSSC-ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290
            L +C +L+  L++ + IH +  K G      V T LID+++K G++++A  +F N    D
Sbjct: 1012 LRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLD 1071

Query: 291  TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350
               W+AM+  Y     G K++ +F  + K+    D+IT      AC    L+D+G    +
Sbjct: 1072 LACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQG-KQIH 1130

Query: 351  SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP--ILWRTLLSSCSSHN 408
            +   K G    +     ++D+  + G +  A    + +   S P  + W +++S C  + 
Sbjct: 1131 AHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYI---SAPDDVAWTSMISGCVDNG 1187

Query: 409  NLGLAKQVIERI 420
            N   A ++  R+
Sbjct: 1188 NEDQALRIYHRM 1199



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 168/380 (44%), Gaps = 54/380 (14%)

Query: 9    ITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPT 68
            +T +P  KLC N+                + +H   IK  L+ D+ V   L+N  ++   
Sbjct: 728  MTLAPVLKLCLNS----------GCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSK--- 774

Query: 69   TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSL 128
               M  A LLFD + E D+VL+N M +GY +      A  LF E   SGL PD++S   +
Sbjct: 775  CGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLI 834

Query: 129  LKACACVGAEALEEGK----QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
            L   + V     +EGK    Q+  +A KL L+ +                          
Sbjct: 835  LNGVSEVN---WDEGKWLADQVQAYAAKLSLSDD-------------------------- 865

Query: 185  ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
               P V  +N  ++    +     A+  F  +   N+    VT+L  L++ A    L+LG
Sbjct: 866  --NPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELG 923

Query: 245  KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
            K +H    K GLD  V V  +L++M++K G    A  VF++M   D  +W++MI + A  
Sbjct: 924  KQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQS 983

Query: 305  GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD---KYGIVPG 361
                +S+ +F +++   + PD  T   +L ACS   L+D G N    +     K G +  
Sbjct: 984  SLEEESVNLFIDLLHEGLKPDHFTLASVLRACS--SLID-GLNISRQIHVHALKTGNIAD 1040

Query: 362  IKHYGCMVDLLGRAGRLDEA 381
                  ++D+  ++G+++EA
Sbjct: 1041 SFVATTLIDVYSKSGKMEEA 1060



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 106/209 (50%), Gaps = 5/209 (2%)

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           GK  H   +  G   + ++   L+ +Y++C  + +AR++F+   E  +V++NAI+ AYA 
Sbjct: 640 GKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAA 699

Query: 203 SSRPN-----EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
           S   N     E L LFR L+      T +T+   L  C   G L   + +H Y  K GL+
Sbjct: 700 SVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLE 759

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
             V V+ AL+++++KCGR+ DA  +FD M  +D   W+ M+  Y   G   ++  +F E 
Sbjct: 760 WDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEF 819

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGW 346
            ++ + PDE +   +L   S     +  W
Sbjct: 820 HRSGLRPDEFSVQLILNGVSEVNWDEGKW 848



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 147/353 (41%), Gaps = 40/353 (11%)

Query: 61  NFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRS-----KTPIRAIFLFVELLN 115
           N  T      S+  A  +FD  PE D+V +N +   Y+ S           + LF  L  
Sbjct: 661 NLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRA 720

Query: 116 SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDV 175
           S       +   +LK C   G     EG  +H +AIK+GL  +++V   L+N+Y++C  +
Sbjct: 721 SLGSTTRMTLAPVLKLCLNSGCLWAAEG--VHGYAIKIGLEWDVFVSGALVNIYSKCGRM 778

Query: 176 EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSC 235
             AR +F+ + E  VV +N ++  Y +     EA  LF E     L+P + ++   L+  
Sbjct: 779 RDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGV 838

Query: 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWS 295
           + + + D GKW+ + ++ Y                AK    DD   VF          W+
Sbjct: 839 SEV-NWDEGKWLADQVQAYA---------------AKLSLSDDNPDVF---------CWN 873

Query: 296 AMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355
             +      G    +I  F  M    +  D +T L +L A + T  ++ G    + +  K
Sbjct: 874 KKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELG-KQVHGIAVK 932

Query: 356 YGIVPGIKHYGCMVDLLGRAG---RLDEAYRFIDELPIKSTPILWRTLLSSCS 405
            G+   +     +V++  + G      E +  +  L +    I W +++SSC+
Sbjct: 933 SGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDL----ISWNSMISSCA 981



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 89/204 (43%), Gaps = 18/204 (8%)

Query: 230 SALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK 289
           +A+S+  LL    LGK  H  I   G      ++  L+ M++KCG L  A  VFD    +
Sbjct: 630 TAISTHNLL----LGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPER 685

Query: 290 DTQAWSAMIVAYA-----THGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG--LV 342
           D   W+A++ AYA       G   + + +F  +  +  S   +T   +L  C ++G    
Sbjct: 686 DLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWA 745

Query: 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
            EG    +    K G+   +   G +V++  + GR+ +A    D +  +   +LW  +L 
Sbjct: 746 AEG---VHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDV-VLWNMML- 800

Query: 403 SCSSHNNLGLAKQVIERIFELDDS 426
               +  LGL K+  +   E   S
Sbjct: 801 --KGYVQLGLEKEAFQLFSEFHRS 822


>gi|220061995|gb|ACL79585.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 589

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 215/546 (39%), Positives = 331/546 (60%), Gaps = 23/546 (4%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKT-HLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           SLLPR  S R   Q HA  + + HL     +  + ++    +P  +++ HA LL   +P 
Sbjct: 14  SLLPRLASLRHYLQFHARLLTSGHLGAHPGLRARFLDRLALSPHPAALPHALLLLRSLPT 73

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP--DDYSFPSLLKACA-CVGAEALE 141
           P     N   RG + S  P R++ L    L   LLP  D  S    LKA A C  A    
Sbjct: 74  PATNDLNAALRGLAASPHPARSLLLLAGRLLPALLPRPDALSLSFALKASARCSDAHTT- 132

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
              QLH   ++LG+ +++ + TTL++ YA+C D+ +AR++F+ ++   V ++N+++   A
Sbjct: 133 --VQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLA 190

Query: 202 RSSRPNEALSLF-------RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           + + PN AL+LF       +EL  R  +P +VT+++ LS+CA +G L  G ++HE+ KK+
Sbjct: 191 QGTEPNLALALFHRLANSFQELPSRE-EPNEVTIVAVLSACAQIGLLKDGMYVHEFAKKF 249

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ--AWSAMIVAYATHGQGHKSIL 312
           GLD+ V+V  +LIDM++KCG L  A+ VF ++  +D    +++A I A++ HG G  ++ 
Sbjct: 250 GLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDRTLVSYNAAIQAHSMHGHGGDALR 309

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           +F+EM   ++ PD +T+L +L  C+H+GLVD+G   F SMR    + P +KHYG +VDLL
Sbjct: 310 LFDEM-PTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMR----VAPNMKHYGTIVDLL 364

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432
           GRAGRL EAY  +  +P  +  +LW+TLL +   H  + LA+    ++ EL  +  GDYV
Sbjct: 365 GRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYV 424

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
           +LSN+ A   RW DV  +R  M+   V KVPG S  E++ V+ +F +GD  H    ++ +
Sbjct: 425 LLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYR 484

Query: 493 ALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVV 552
           AL+++V  +  +GY P+TS V H D+ +EEK+ AL YHSEKLAI FGL+ TPPG T+RV+
Sbjct: 485 ALEDIVSRISELGYEPETSNVLH-DIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVI 543

Query: 553 KNLRVC 558
           KNLR+C
Sbjct: 544 KNLRIC 549



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 149/299 (49%), Gaps = 24/299 (8%)

Query: 22  PNALSLL------PRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           P+ALSL        RC+      Q+HA+ ++  +  D+ +LT L++   +      +  A
Sbjct: 111 PDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAK---CGDLASA 167

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL------LPDDYSFPSLL 129
             +FD +   D+  +N++  G ++   P  A+ LF  L NS         P++ +  ++L
Sbjct: 168 RKVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAVL 227

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS--E 187
            ACA +G   L++G  +H FA K GL+ N+ VC +LI++Y++C  +  A  +F +I   +
Sbjct: 228 SACAQIG--LLKDGMYVHEFAKKFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPED 285

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
             +VSYNA I A++      +AL LF E+  R ++P  VT L+ L  C   G +D G  +
Sbjct: 286 RTLVSYNAAIQAHSMHGHGGDALRLFDEMPTR-IEPDGVTYLAVLCGCNHSGLVDDGLRV 344

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHG 305
              ++   +   +K    ++D+  + GRL +A     +M    D   W  ++ A   HG
Sbjct: 345 FNSMR---VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHG 400


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 193/543 (35%), Positives = 321/543 (59%), Gaps = 12/543 (2%)

Query: 22  PNALSL---LPRCTS--FRGL-KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PN  +L   L  C +  F+ L +Q+H+  IK    +DL     L++  ++      M+ A
Sbjct: 282 PNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSK---CEMMDDA 338

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
              +D +P+ DI+ +N +  GYS+    + A+ LF ++ +  +  +  +  ++LK+ A +
Sbjct: 339 RRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASL 398

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
             +A++  KQ+H  +IK G+ S+ YV  +L++ Y +C+ ++ A +IFE  +   +V+Y +
Sbjct: 399 --QAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTS 456

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +ITAY++     EAL L+ ++Q+ ++KP      S L++CA L + + GK +H +  K+G
Sbjct: 457 MITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFG 516

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
               +  + +L++M+AKCG ++DA   F  +  +   +WSAMI  YA HG G +++ +F 
Sbjct: 517 FMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFN 576

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
           +M++  V P+ IT + +L AC+H GLV+EG  YF  M   +GI P  +HY CM+DLLGR+
Sbjct: 577 QMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRS 636

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
           G+L+EA   ++ +P ++   +W  LL +   H N+ L ++  + +F+L+    G +V+L+
Sbjct: 637 GKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLA 696

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           N+ A AG WE+V  +RK MKD  V K PG S IE+ + V  F  GD  HS S ++   LD
Sbjct: 697 NIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSDEIYAKLD 756

Query: 496 ELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNL 555
           +L   L   GY     +  H +++  EKE  L +HSEKLA+ FGL+ TPPG  IRV KNL
Sbjct: 757 QLGDLLSKAGYSSIVEIDIH-NVDKSEKEKLLYHHSEKLAVAFGLIATPPGGPIRVKKNL 815

Query: 556 RVC 558
           R+C
Sbjct: 816 RIC 818



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/392 (28%), Positives = 198/392 (50%), Gaps = 19/392 (4%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           ++HA  IK     D ++   L+   ++        +A  L D   E D+V ++++  GY 
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSK---CRRFGYARKLVDESSELDVVSWSSLLSGYV 58

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
           ++     A+ +F E+   G+  ++++FPS+LKAC+      L  G+++H  A+  G  S+
Sbjct: 59  QNGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSM--KRDLNMGRKVHGMAVVTGFESD 116

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
            +V  TL+ +YA+C  ++ +RR+F  I E  VVS+NA+ + Y +S    EA+ LF+E+  
Sbjct: 117 GFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVR 176

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
             + P + ++   L++CA L   DLG+ IH  + K GLD       AL+DM++K G ++ 
Sbjct: 177 SGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEG 236

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           AV+VF +++  D  +W+A+I     H     ++++ +EM  +   P+  T    L AC+ 
Sbjct: 237 AVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAA 296

Query: 339 TGLVDEGWNYFYSM------RDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
            G  + G     S+       D +  V        +VD+  +   +D+A R  D +P K 
Sbjct: 297 MGFKELGRQLHSSLIKMDAHSDLFAAVG-------LVDMYSKCEMMDDARRAYDSMP-KK 348

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
             I W  L+S  S   +   A  +  ++F  D
Sbjct: 349 DIIAWNALISGYSQCGDHLDAVSLFSKMFSED 380



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 203/394 (51%), Gaps = 13/394 (3%)

Query: 22  PNALSLLPRCTSFRGL------KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PN  S+     +  GL      ++IH + +K  L  D      L++  ++      +E A
Sbjct: 181 PNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSK---AGEIEGA 237

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
             +F  I  PD+V +N +  G         A+ L  E+  SG  P+ ++  S LKACA +
Sbjct: 238 VAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAM 297

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
           G + L  G+QLH   IK+  +S+L+    L+++Y++C  ++ ARR ++++ +  ++++NA
Sbjct: 298 GFKEL--GRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNA 355

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +I+ Y++     +A+SLF ++   ++     T+ + L S A L ++ + K IH    K G
Sbjct: 356 LISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSG 415

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
           +     V  +L+D + KC  +D+A  +F+  + +D  A+++MI AY+ +G G +++ ++ 
Sbjct: 416 IYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYL 475

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
           +M  A + PD      LL AC++    ++G    +    K+G +  I     +V++  + 
Sbjct: 476 QMQDADIKPDPFICSSLLNACANLSAYEQG-KQLHVHAIKFGFMCDIFASNSLVNMYAKC 534

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
           G +++A R   E+P +   + W  ++   + H +
Sbjct: 535 GSIEDADRAFSEIPNRGI-VSWSAMIGGYAQHGH 567



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 134/558 (24%), Positives = 260/558 (46%), Gaps = 68/558 (12%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  C+  R L   +++H + + T  ++D  V   L+           ++ +  LF  I
Sbjct: 87  SVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLV---VMYAKCGLLDDSRRLFGGI 143

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
            E ++V +N +   Y +S+    A+ LF E++ SG++P+++S   +L ACA  G +  + 
Sbjct: 144 VERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACA--GLQEGDL 201

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G+++H   +K+GL+ + +    L+++Y++  ++E A  +F++I+ P VVS+NAII     
Sbjct: 202 GRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVL 261

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
               + AL L  E++    +P   T+ SAL +CA +G  +LG+ +H  + K      +  
Sbjct: 262 HDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFA 321

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
              L+DM++KC  +DDA   +D+M  KD  AW+A+I  Y+  G    ++ +F +M    +
Sbjct: 322 AVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDI 381

Query: 323 SPDEITFLGLLYACS-----------HTGLVDEG-WNYFY---SMRDKYGIVPGIKH--- 364
             ++ T   +L + +           HT  +  G ++ FY   S+ D YG    I     
Sbjct: 382 DFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASK 441

Query: 365 ------------YGCMVDLLGRAGRLDEA---YRFIDELPIKSTPILWRTLLSSCSSHNN 409
                       Y  M+    + G  +EA   Y  + +  IK  P +  +LL++C++ + 
Sbjct: 442 IFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSA 501

Query: 410 LGLAKQV----IERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGC 465
               KQ+    I+  F  D       V   N+ A+ G  ED D     + +RG++     
Sbjct: 502 YEQGKQLHVHAIKFGFMCDIFASNSLV---NMYAKCGSIEDADRAFSEIPNRGIVSWSA- 557

Query: 466 SSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLV---HHGDMEDEE 522
                         G   H +  +  +  ++++++     ++   S++   +H  + +E 
Sbjct: 558 -----------MIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEG 606

Query: 523 KEIALRYHSEKLAITFGL 540
           K+     + EK+ + FG+
Sbjct: 607 KQ-----YFEKMEVMFGI 619



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 152/288 (52%), Gaps = 7/288 (2%)

Query: 19  TNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLL 78
           T     L  +    + +  KQIH ++IK+ + +D  V+  L++        + ++ A  +
Sbjct: 386 TTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLD---TYGKCNHIDEASKI 442

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
           F+     D+V + +M   YS+      A+ L++++ ++ + PD +   SLL ACA +   
Sbjct: 443 FEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANL--S 500

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
           A E+GKQLH  AIK G   +++   +L+N+YA+C  +E A R F  I    +VS++A+I 
Sbjct: 501 AYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIG 560

Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK-KYGLD 257
            YA+     EAL LF ++    + P  +T++S L +C   G ++ GK   E ++  +G+ 
Sbjct: 561 GYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIK 620

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATH 304
              +    +ID+  + G+L++AV + +++  + D   W A++ A   H
Sbjct: 621 PTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIH 668


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 195/541 (36%), Positives = 315/541 (58%), Gaps = 18/541 (3%)

Query: 26  SLLPRCTSFRGL----KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           S+L  C+S        +Q+H   +K  +  D  V T LI+  ++      ME A LLF  
Sbjct: 403 SVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKG---GKMEEAELLFHN 459

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
               D+  +N M  G++ S     A+ LF  +   G   D  +F +  KA  C+    L+
Sbjct: 460 QDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCL--VRLQ 517

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           +GKQ+H   IK+  + +L+V + ++++Y +C ++++AR++F  I  P  V++  +I+   
Sbjct: 518 QGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCV 577

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY--GLDKY 259
            +    +AL  + +++   ++P + T  + + +C+LL +L+ GK IH  I K     D +
Sbjct: 578 ENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPF 637

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           V   T+L+DM+AKCG ++DA  +F  M+ +    W+AMIV  A HG   +++  F EM  
Sbjct: 638 VM--TSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKS 695

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
             V+PD +TF+G+L ACSH+GL  + +  F SM+  YG+ P I+HY C+VD L RAG + 
Sbjct: 696 RGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQ 755

Query: 380 EAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439
           EA + +  +P +++  ++RTLL++C    +    ++V E++F +D S    YV+LSN+ A
Sbjct: 756 EAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYA 815

Query: 440 RAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVK 499
            A +WE+    R +MK   V K PG S I++ N V  F +GD  H  +  +   ++ ++K
Sbjct: 816 AANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMK 875

Query: 500 ELKMVGYVPDT--SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRV 557
            +K  GYVPDT  +LV   D+E+E+KE AL YHSEKLAI +GL+ TPP TT+RV+KNLRV
Sbjct: 876 RIKEEGYVPDTEFALV---DIEEEDKESALSYHSEKLAIAYGLMKTPPSTTLRVIKNLRV 932

Query: 558 C 558
           C
Sbjct: 933 C 933



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 113/445 (25%), Positives = 194/445 (43%), Gaps = 69/445 (15%)

Query: 10  TQSPPPKLCT--NTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNP 67
           T SP  KLC    +P+A   L                +K  LQ D+ V   L+N   +  
Sbjct: 124 TLSPLFKLCLLYGSPSASEAL------------QGYAVKIGLQWDVFVAGALVNIYAK-- 169

Query: 68  TTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPS 127
               +  A +LFDR+P  D+VL+N M + Y         + LF     SGL PD  S  +
Sbjct: 170 -FQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRT 228

Query: 128 LLKACACVGAEAL--EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
           +L     VG + +   E +Q+  +A KL      +VC        + SDV          
Sbjct: 229 ILMG---VGKKTVFERELEQVRAYATKL------FVCD-------DDSDVTV-------- 264

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245
                  +N  +++Y ++    EA+  FR++ +  +    +T +  LS  A L  L+LGK
Sbjct: 265 -------WNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGK 317

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
            IH  + ++G D++V V  + I+M+ K G ++ A  +F  M   D  +W+ +I   A  G
Sbjct: 318 QIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSG 377

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW---NYFYSMRDKYGIVPGI 362
               S+ +F +++++ + PD+ T   +L ACS    ++E +      ++   K GIV   
Sbjct: 378 LEECSLRLFIDLLRSGLLPDQFTITSVLRACSS---LEESYCVGRQVHTCALKAGIVLDS 434

Query: 363 KHYGCMVDLLGRAGRLDEA---YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIER 419
                ++D+  + G+++EA   +   D   + S    W  ++   +  +N   A     R
Sbjct: 435 FVSTALIDVYSKGGKMEEAELLFHNQDGFDLAS----WNAMMHGFTVSDNYREAL----R 486

Query: 420 IFELDDSHG--GDYVILSNLCARAG 442
           +F L    G   D +  +N    AG
Sbjct: 487 LFSLMHERGEKADQITFANAAKAAG 511



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 105/199 (52%), Gaps = 8/199 (4%)

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI--SEPCVVSYNAIITAY 200
           GK+ H   +  GLN + YV   LI +YA+C  + +AR++F+    S+  +V+YNAI+ AY
Sbjct: 32  GKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAY 91

Query: 201 ARSS------RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           A +       + +EA  +FR L++  +  T  T+      C L GS    + +  Y  K 
Sbjct: 92  AHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKI 151

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
           GL   V V  AL++++AK  R+ +A  +FD M  +D   W+ M+ AY   G G + + +F
Sbjct: 152 GLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLF 211

Query: 315 EEMMKAQVSPDEITFLGLL 333
               ++ + PD ++   +L
Sbjct: 212 SAFHRSGLRPDCVSVRTIL 230



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 24/178 (13%)

Query: 241 LDLGKWIHEYIKKYGL--DKYVKVNTALIDMHAKCGRLDDAVSVFD--NMSGKDTQAWSA 296
           L LGK  H  I   GL  D+YV  N  LI M+AKCG L  A  +FD    S +D   ++A
Sbjct: 29  LILGKRTHAVIVTSGLNPDRYVTNN--LITMYAKCGSLFSARKLFDITPQSDRDLVTYNA 86

Query: 297 MIVAYATHGQGHK-----------SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
           ++ AYA  G+ H             +L    M+  + +   +  L LLY         +G
Sbjct: 87  ILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQG 146

Query: 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
           +        K G+   +   G +V++  +  R+ EA    D +P++   +LW  ++ +
Sbjct: 147 YAV------KIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDV-VLWNVMMKA 197


>gi|77554579|gb|ABA97375.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 794

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 215/546 (39%), Positives = 332/546 (60%), Gaps = 23/546 (4%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKT-HLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           SLLPR  S R   Q HA  + + HL     +  + ++    +P  +++ HA LL   +P 
Sbjct: 12  SLLPRLASLRHYLQFHARLLTSGHLGAHPGLRARFLDRLALSPHPAALPHALLLLRSLPT 71

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP--DDYSFPSLLKACA-CVGAEALE 141
           P     N   RG + S  P R++ L    L   LLP  D  S    LKA A C  A    
Sbjct: 72  PATNDLNAALRGLAASPHPARSLLLLAGRLLPALLPRPDALSLSFALKASARCSDAHTT- 130

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
              QLH   ++LG+ +++ + TTL++ YA+C D+ +AR++F+ ++   V ++N+++   A
Sbjct: 131 --VQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLA 188

Query: 202 RSSRPNEALSLF-------RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           + + PN AL+LF       +EL  R  +P +VT+++ALS+CA +G L  G ++HE+ K++
Sbjct: 189 QGTEPNLALALFHRLANSFQELPSRE-EPNEVTIVAALSACAQIGLLKDGMYVHEFAKRF 247

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ--AWSAMIVAYATHGQGHKSIL 312
           GLD+ V+V  +LIDM++KCG L  A+ VF ++  +D    +++A I A++ HG G  ++ 
Sbjct: 248 GLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQTLVSYNAAIQAHSMHGHGGDALR 307

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           +F+EM   ++ PD +T+L +L  C+H+GLVD+G   F SMR    + P +KHYG +VDLL
Sbjct: 308 LFDEM-PTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMR----VAPNMKHYGTIVDLL 362

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432
           GRAGRL EAY  +  +P  +  +LW+TLL +   H  + LA+    ++ EL  +  GDYV
Sbjct: 363 GRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYV 422

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
           +LSN+ A   RW DV  +R  M+   V KVPG S  E++ V+ +F +GD  H    ++ +
Sbjct: 423 LLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYR 482

Query: 493 ALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVV 552
           AL+++V  +  +GY P+TS V H D+ +EEK+ AL YHSEKLAI FGL+ TPPG T+RV+
Sbjct: 483 ALEDIVSRISELGYEPETSNVLH-DIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVI 541

Query: 553 KNLRVC 558
           KNLR+C
Sbjct: 542 KNLRIC 547



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 149/299 (49%), Gaps = 24/299 (8%)

Query: 22  PNALSLL------PRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           P+ALSL        RC+      Q+HA+ ++  +  D+ +LT L++   +    +S   A
Sbjct: 109 PDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLAS---A 165

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL------LPDDYSFPSLL 129
             +FD +   D+  +N++  G ++   P  A+ LF  L NS         P++ +  + L
Sbjct: 166 RKVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAAL 225

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI--SE 187
            ACA +G   L++G  +H FA + GL+ N+ VC +LI++Y++C  +  A  +F +I   +
Sbjct: 226 SACAQIG--LLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPED 283

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
             +VSYNA I A++      +AL LF E+  R ++P  VT L+ L  C   G +D G  +
Sbjct: 284 QTLVSYNAAIQAHSMHGHGGDALRLFDEMPTR-IEPDGVTYLAVLCGCNHSGLVDDGLRV 342

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHG 305
              ++   +   +K    ++D+  + GRL +A     +M    D   W  ++ A   HG
Sbjct: 343 FNSMR---VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHG 398


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 198/526 (37%), Positives = 307/526 (58%), Gaps = 7/526 (1%)

Query: 34  FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM 93
           F+G K  H++ IK  L+ D  V   L+N  T+     S+E AH +F+ +P  + V++  M
Sbjct: 129 FQGAKLFHSLAIKLRLEGDPYVAPALMNVYTE---LGSLEEAHKVFEEVPLKNSVIWGVM 185

Query: 94  ARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL 153
            +G+           LF  +  SG   D +    L++AC  V A   +EGK  H   IK 
Sbjct: 186 IKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAG--KEGKTFHGLCIKK 243

Query: 154 G-LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL 212
             ++SN ++ T+L+++Y +C  ++ A ++FE IS   VV ++AII  +AR+ R  E++S+
Sbjct: 244 NFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISM 303

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           FR++   ++ P  VT  S + +C+ LGSL  G+ +H Y+ + G++  VK  T+ IDM+AK
Sbjct: 304 FRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAK 363

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
           CG +  A  VF  +  K+  +WS MI  +  HG   +++ +F EM      P+ +TF+ +
Sbjct: 364 CGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSV 423

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L ACSH+G ++EGW++F SM   YGI P  +HY CMVDLLGRAG++DEA  FI+ +P + 
Sbjct: 424 LSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEP 483

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452
               W  LL +C  H    LA++V +++  L+    G YV+LSN+ A  G WE V   R 
Sbjct: 484 GASAWGALLGACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRL 543

Query: 453 LMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSL 512
            M ++G+ K+ G +SIE+   +  F S D     +T ++   + L + ++ +GYVPD   
Sbjct: 544 KMCEKGIHKIVGFTSIEIEEKLYLFSSEDRFAYKNTQIESLWNSLKERMRELGYVPDLRF 603

Query: 513 VHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           V H D++DE K+  L  HSEKLAI FGLLN+  G  IR+ KN+RVC
Sbjct: 604 VLH-DVDDEVKQEVLCGHSEKLAIVFGLLNSGEGMPIRITKNMRVC 648



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 218/469 (46%), Gaps = 24/469 (5%)

Query: 1   MATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLI 60
           M   P PPI+   P      T   LSL     +     Q++A  +   L   L     + 
Sbjct: 1   MEPNPFPPISSRNP------TKTLLSLFRFTKTLASNHQLNAQILVNALHRSLLFGPMIF 54

Query: 61  NFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP 120
               Q     S+  A   F+ I   ++  +NT+   +S++K     + LF  +L  G L 
Sbjct: 55  GAYIQ---LGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLV 111

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           D ++    +KAC   G    +  K  H  AIKL L  + YV   L+N+Y E   +E A +
Sbjct: 112 DSFNLVFAVKAC--FGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHK 169

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
           +FE +     V +  +I  +   S       LF  ++    +     +   + +C  + +
Sbjct: 170 VFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYA 229

Query: 241 LDLGKWIHEY-IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIV 299
              GK  H   IKK  +D    + T+L+DM+ KCG LD A+ +F+ +S +D   WSA+I 
Sbjct: 230 GKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIA 289

Query: 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGI 358
            +A +G+  +SI MF +M+   V+P+ +TF  ++ ACS  G + +G + + Y +R+  G+
Sbjct: 290 GFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRN--GV 347

Query: 359 VPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
              +K+Y   +D+  + G +  AYR   ++P K+    W T+++    H   GL  + + 
Sbjct: 348 ELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNV-FSWSTMINGFGMH---GLCAEALN 403

Query: 419 RIFELDD----SHGGDYVILSNLCARAGRWED-VDYLRKLMKDRGVLKV 462
             +E+       +   +V + + C+ +GR E+   + + + +D G+  V
Sbjct: 404 LFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPV 452


>gi|356521885|ref|XP_003529581.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Glycine max]
          Length = 603

 Score =  364 bits (935), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 202/545 (37%), Positives = 319/545 (58%), Gaps = 10/545 (1%)

Query: 19  TNT-PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHL 77
           TNT  + ++ L  C         H+  +K+ L ND      LIN C     T  ++HA  
Sbjct: 24  TNTKAHFVAKLQTCKDLTSATSTHSNVVKSGLSNDTFATNHLIN-CYLRLFT--IDHAQK 80

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           LFD +P  ++V + ++  GY     P  A+ LF ++  + +LP++++F +L+ AC+ +  
Sbjct: 81  LFDEMPHRNVVSWTSLMAGYVSQGQPNMALCLFHQMQGTLVLPNEFTFATLINACSILAN 140

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
             LE G+++H      GL SNL  C++LI++Y +C+ V+ AR IF+++    VVS+ ++I
Sbjct: 141 --LEIGRRIHALVEVSGLGSNLVACSSLIDMYGKCNHVDEARLIFDSMCTRNVVSWTSMI 198

Query: 198 TAYARSSRPNEALSLFRELQERNL-KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           T Y+++++ + AL LF+E     L KP    + SA+S+CA LGSL  GK  H  + + G 
Sbjct: 199 TTYSQNAQGHHALQLFKEFNHSRLDKPNHFMLCSAVSACASLGSLGSGKITHGVVIRLGH 258

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
           +    + +AL+DM+AKCG ++ +  +F  +       +++MIV  A +G G  S+ +F+E
Sbjct: 259 EASDVIASALVDMYAKCGCVNYSAKIFRRIQNPSVIPYTSMIVGAAKYGLGILSLQLFQE 318

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M+  ++ P++ITF+G+L+ACSH+GLVD+G     SM  KYG+ P  KHY C+ D+LGR G
Sbjct: 319 MVVRRIKPNDITFVGVLHACSHSGLVDKGLELLDSMDGKYGVTPDAKHYTCIADMLGRVG 378

Query: 377 RLDEAYRFIDELPIKST--PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
           R++EAY+    + ++     +LW TLLS+   +  + +A +   R+ E +    G YV L
Sbjct: 379 RIEEAYQLAKSVQVEGDGYAMLWGTLLSASRLYGRVDIALEASNRLIESNQQVAGAYVTL 438

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGD-GVHSYSTDLQKA 493
           SN  A AG WE+   LR  MK  GV K PG S IE+      F +GD   ++   ++   
Sbjct: 439 SNAYALAGDWENAHNLRSEMKHTGVYKEPGSSWIEIKESTYLFHAGDISKYTQGREILSL 498

Query: 494 LDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVK 553
           L EL + +K  GYV  T  +   D+E+E KE  +  HSEKLA+ FGL+NTP G TIR++K
Sbjct: 499 LRELEERMKGRGYVGGTKGLVFVDVEEEAKEEIVSMHSEKLALAFGLINTPKGVTIRIMK 558

Query: 554 NLRVC 558
           NLR+C
Sbjct: 559 NLRMC 563


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 204/562 (36%), Positives = 311/562 (55%), Gaps = 44/562 (7%)

Query: 34  FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM 93
           F G+ ++H    K    +D  V T L++          + +A  +FD + + D+V +NTM
Sbjct: 131 FEGM-ELHGFAFKIATLSDPFVETGLMDMYA---ACGRINYARNVFDEMSQRDVVTWNTM 186

Query: 94  ARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL 153
              Y R      A  LF E+ +S ++PD+    +++ AC   G   +   + ++ F I+ 
Sbjct: 187 IERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGN--MRYNRAIYDFLIEN 244

Query: 154 GLN-------------------------------SNLYVCTTLINLYAECSDVEAARRIF 182
            +                                 NL+V T +++ Y++   ++ AR IF
Sbjct: 245 DVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIF 304

Query: 183 ENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242
           +      +V +  +I+AYA S  P EAL +F E+    +KP  VTMLS +S+C  LG+LD
Sbjct: 305 DQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLD 364

Query: 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYA 302
             KW+H Y    GL+  + ++ ALI+M+AKCG LD A  VF+ M  ++  +WS+MI A+A
Sbjct: 365 KAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFA 424

Query: 303 THGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI 362
            HG+   S+ +F +M +  V P+E+TF+G+LY CSH+GLV+EG   F SM D+Y I P I
Sbjct: 425 MHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKI 484

Query: 363 KHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
           +HYGCMVDL GRA  L EA   I+ +P+    ++W +L+S+C  H  L L +   +RI +
Sbjct: 485 EHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILK 544

Query: 423 LDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDG 482
           L+  H G  V++SN+ AR  RW+ V  +R +M+ + V K  G S I++N    EF  GD 
Sbjct: 545 LEPDHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDK 604

Query: 483 VHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLN 542
            H  S ++   L E+V +LK+ GYVPD   V   D+E+EEK+  + +HSEKLA+ FGL+N
Sbjct: 605 RHKQSNEIYTKLYEVVSKLKLAGYVPDGGSV-LVDVEEEEKKDLVLWHSEKLALCFGLMN 663

Query: 543 TPPGT------TIRVVKNLRVC 558
                       IR+VKNLRVC
Sbjct: 664 KEKEEEKGSCGVIRIVKNLRVC 685



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 222/432 (51%), Gaps = 46/432 (10%)

Query: 13  PPPKLCTNTPNALSLLPR---CTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTT 69
           PPP+       A ++L +   C S   +KQ+HA  ++T + + LN     +   + + ++
Sbjct: 4   PPPRPSFAVSAANTILEKLSFCKSLNHIKQLHAHILRTVINHKLNSFLFNL---SFSSSS 60

Query: 70  SSMEHAHLLFDRI-PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSL 128
            ++ +A  LF  I P P+ ++FN++ R  SRS  P   I  +  + + G   D  SFP +
Sbjct: 61  INLSYALNLFSSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPI 120

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP 188
           LKA + V A  L EG +LH FA K+   S+ +V T L+++YA C  +  AR +F+ +S+ 
Sbjct: 121 LKAVSKVSA--LFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQR 178

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
            VV++N +I  Y R    +EA  LF E+++ N+ P ++ + + +S+C   G++   + I+
Sbjct: 179 DVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIY 238

Query: 249 --------------------------------EYIKKYGLDKYVKVNTALIDMHAKCGRL 276
                                           E+ +K  + + + V+TA++  ++K GRL
Sbjct: 239 DFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSV-RNLFVSTAMVSGYSKAGRL 297

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           DDA  +FD    KD   W+ MI AYA      +++ +FEEM  + + PD +T L ++ AC
Sbjct: 298 DDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISAC 357

Query: 337 SHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
            + G +D+  W + Y+  +    V  I +   ++++  + G LD A    +++P ++  +
Sbjct: 358 VNLGTLDKAKWVHRYTHLNGLESVLPIDN--ALINMYAKCGGLDAARDVFEKMPTRNV-V 414

Query: 396 LWRTLLSSCSSH 407
            W +++++ + H
Sbjct: 415 SWSSMINAFAMH 426


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 209/575 (36%), Positives = 326/575 (56%), Gaps = 46/575 (8%)

Query: 21  TPNALSLLPRCTSFRGLKQIHAVTI------KTHLQNDLNVLTKLINFCTQNPTTSSMEH 74
            P+ ++++    +   L  +H   I      +   Q D+ + T +I+   +      +E 
Sbjct: 256 VPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAK---CGCVES 312

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +FDR+ E +++ ++ M   Y       +A+ LF  +L+SG+LPD  +  SLL AC  
Sbjct: 313 AREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYAC-- 370

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           +    L + +Q+H  A   G+  NL V   L++ Y+    ++ A  +F+ +     VS++
Sbjct: 371 INCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWS 430

Query: 195 AIITAYAR-----------------SSRP-----------NEALSLFRELQERNLKPTDV 226
            ++  +A+                  +RP           NE+L LF +++E  + P  V
Sbjct: 431 VMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKV 490

Query: 227 TMLSALSSCALLGSLDLGKWIHEYI--KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFD 284
            M++ + +CA LG++   + I +YI  KK+ LD  V + TA+IDMHAKCG ++ A  +FD
Sbjct: 491 AMVTVVFACAKLGAMHKARTIDDYIQRKKFQLD--VILGTAMIDMHAKCGCVESAREIFD 548

Query: 285 NMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDE 344
            M  K+  +WSAMI AY  HGQG K++ +F  M+++ + P++IT + LLYACSH GLV+E
Sbjct: 549 RMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEE 608

Query: 345 GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSC 404
           G  +F  M + Y +   +KHY C+VDLLGRAGRLDEA + I+ + ++    LW   L +C
Sbjct: 609 GLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGAC 668

Query: 405 SSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPG 464
            +H ++ LA++    + EL   + G Y++LSN+ A AGRWEDV   R LM  R + K+PG
Sbjct: 669 RTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPG 728

Query: 465 CSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKE 524
            + IEV+N   +F  GD  H  S ++ + L  L  +L++VGYVPDT+ V H    DEE +
Sbjct: 729 WTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHD--VDEELK 786

Query: 525 IALRY-HSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           I + Y HSEKLAI FGL+ TP  T IR++KNLRVC
Sbjct: 787 IGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVC 821



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 198/386 (51%), Gaps = 32/386 (8%)

Query: 20  NTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLF 79
           N    +S L  C +   ++Q+HA      +  ++ V  KLI F +      +++ A+ LF
Sbjct: 80  NPKFYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSY---YRALDDAYGLF 136

Query: 80  DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEA 139
           D +   D V ++ M  G+++    I     F EL+  G  PD+Y+ P +++AC       
Sbjct: 137 DGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRAC------- 189

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
             + K L                  L+++Y +C ++E AR +F+ + E  +V++  +I  
Sbjct: 190 -RDLKNLQ---------------MALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGG 233

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI--KKYGLD 257
           YA   + NE+L LF +++E  + P  V M++ + +CA LG++   + I +YI  KK+ LD
Sbjct: 234 YAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLD 293

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
             V + TA+IDM+AKCG ++ A  +FD M  K+  +WSAMI AY  HGQG K++ +F  M
Sbjct: 294 --VILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMM 351

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
           + + + PD+IT   LLYAC +   + +     ++    +G++  +     +V        
Sbjct: 352 LSSGMLPDKITLASLLYACINCRNLTQV-RQVHAQASVHGMLQNLIVANKLVHFYSYYRA 410

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSS 403
           LD+AY   D + ++ + + W  ++  
Sbjct: 411 LDDAYGLFDGMCVRDS-VSWSVMVGG 435



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 180/369 (48%), Gaps = 38/369 (10%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +E A  LFD++ E D+V +  M  GY+       ++ LF ++   G++PD  +  +++ A
Sbjct: 209 IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFA 268

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           CA +GA  + + + +  +  +     ++ + T +I++YA+C  VE+AR IF+ + E  V+
Sbjct: 269 CAKLGA--MHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVI 326

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S++A+I AY    +  +AL LFR +    + P  +T+ S L +C    +L   + +H   
Sbjct: 327 SWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQA 386

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH------- 304
             +G+ + + V   L+  ++    LDDA  +FD M  +D+ +WS M+  +A         
Sbjct: 387 SVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCF 446

Query: 305 ---------------------GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVD 343
                                G  ++S+++F++M +  V PD++  + +++AC+  G + 
Sbjct: 447 GTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMH 506

Query: 344 EGW---NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400
           +     +Y    + +  ++ G      M+D+  + G ++ A    D +  K+  I W  +
Sbjct: 507 KARTIDDYIQRKKFQLDVILGT----AMIDMHAKCGCVESAREIFDRMEEKNV-ISWSAM 561

Query: 401 LSSCSSHNN 409
           +++   H  
Sbjct: 562 IAAYGYHGQ 570


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 193/524 (36%), Positives = 306/524 (58%), Gaps = 32/524 (6%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K +H++ IK+  +  +N    L++  ++      ++ A  +F+++ E ++V + +M  GY
Sbjct: 133 KAVHSLAIKSSFERRINFSNTLLDMYSK---CGDLDGALRVFEKMGERNVVSWTSMIAGY 189

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           +R      AI L  ++   G+  D  +  S+L ACA  G+  L+ GK +H +     + S
Sbjct: 190 TRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGS--LDNGKDVHDYIKANNMAS 247

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           NL+VC  L+++YA+C  +E A  +F  +    ++S+N ++                    
Sbjct: 248 NLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG------------------- 288

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              LKP   TM   L +CA L +L+ GK IH YI + G      V  AL+D++ KCG L 
Sbjct: 289 --ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLG 346

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            A  +FD +  KD  +W+ MI  Y  HG G+++I  F EM  A + PDE++F+ +LYACS
Sbjct: 347 LARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACS 406

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H+GL+++GW +FY M++ + I P ++HY CMVDLL R G L +AY+FI+ LPI     +W
Sbjct: 407 HSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIW 466

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             LL  C  ++++ LA++V ER+FEL+  + G YV+L+N+ A A +WE+V  +R+ +  +
Sbjct: 467 GALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKK 526

Query: 458 GVLKVPGCSSIEVNNVVREFFSG-DGVHSYSTDLQKALDELVKELKMVGYVPDT--SLVH 514
           G+ K PGCS IE+   V  F SG +  H +S  ++  L ++ +++K  GY P T  +L++
Sbjct: 527 GLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALIN 586

Query: 515 HGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             +M   +KE+AL  HSEKLA+ FGLL  PP  TIRV KNLRVC
Sbjct: 587 ADEM---QKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVC 627



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 176/355 (49%), Gaps = 30/355 (8%)

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
           E A  LFD++ + D++ +N+M  GY  +    R + ++ +++  G+  D  +  S+L  C
Sbjct: 64  ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGC 123

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
           A  G  +L  GK +H  AIK      +    TL+++Y++C D++ A R+FE + E  VVS
Sbjct: 124 AKSGTLSL--GKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 181

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           + ++I  Y R    + A+ L +++++  +K   V + S L +CA  GSLD GK +H+YIK
Sbjct: 182 WTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIK 241

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
              +   + V  AL+DM+AKCG ++ A SVF  M  KD  +W+ M+              
Sbjct: 242 ANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV-------------- 287

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDL 371
                   ++ PD  T   +L AC+    ++ G   + Y +R+ Y     + +   +VDL
Sbjct: 288 -------GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVAN--ALVDL 338

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
             + G L  A    D +P K   + W  +++    H   G   + I    E+ D+
Sbjct: 339 YVKCGVLGLARLLFDMIPSKDL-VSWTVMIAGYGMH---GYGNEAIATFNEMRDA 389



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/238 (19%), Positives = 103/238 (43%), Gaps = 52/238 (21%)

Query: 165 LINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT 224
           L++ YA C D++  RR+F+ + +  V  +N +++ YA+     E++ LF+ + E+ ++  
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIE-- 59

Query: 225 DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFD 284
                              GK                             R + A  +FD
Sbjct: 60  -------------------GK-----------------------------RSESASELFD 71

Query: 285 NMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDE 344
            +  +D  +W++MI  Y ++G   + + ++++MM   +  D  T + +L  C+ +G +  
Sbjct: 72  KLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTLSL 131

Query: 345 GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
           G    +S+  K      I     ++D+  + G LD A R  +++  ++  + W ++++
Sbjct: 132 G-KAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNV-VSWTSMIA 187


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 199/515 (38%), Positives = 292/515 (56%), Gaps = 34/515 (6%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +FD     ++V++NT+   Y   +     + +  E+L  G  PD  +  S + ACA 
Sbjct: 285 ARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQ 344

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS--------------------- 173
           +G   L  GK  H + ++ GL     +   +I++Y +C                      
Sbjct: 345 LGD--LSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWN 402

Query: 174 ----------DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKP 223
                     D+E A RIF+ + E  +VS+N +I A  + S   EA+ LFRE+Q + +  
Sbjct: 403 SLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPG 462

Query: 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVF 283
             VTM+   S+C  LG+LDL KW+  YI+K  +   +++ TAL+DM ++CG    A+ VF
Sbjct: 463 DRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVF 522

Query: 284 DNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVD 343
             M  +D  AW+A I   A  G    +I +F EM++ +V PD++ F+ LL ACSH G VD
Sbjct: 523 KRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVD 582

Query: 344 EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
           +G   F+SM   +GI P I HYGCMVDLLGRAG L+EA   I  +PI+   ++W +LL++
Sbjct: 583 QGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAA 642

Query: 404 CSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVP 463
           C  H N+ LA    E++ +L     G +V+LSN+ A AG+W DV  +R  MK++GV KVP
Sbjct: 643 CRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVP 702

Query: 464 GCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEK 523
           G SSIEV  ++ EF SGD  H+ +T +   L+E+   L   GYVPDT+ V   D++++EK
Sbjct: 703 GSSSIEVQGLIHEFTSGDESHAENTHIGLMLEEINCRLSEAGYVPDTTNVLL-DVDEQEK 761

Query: 524 EIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           E  L  HSEKLA+ +GL+ T  G  IRVVKNLR+C
Sbjct: 762 EHLLSRHSEKLAMAYGLITTGQGIPIRVVKNLRMC 796



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 131/433 (30%), Positives = 232/433 (53%), Gaps = 14/433 (3%)

Query: 1   MATTPSPPITQSPPPKLCTNTP----NALSLLPRCTSFRGLKQIHAVTIKTHL--QNDLN 54
           MATT  P  T   P  L    P    ++  LL  C + + LKQ+H   +K  L      +
Sbjct: 1   MATTLFPSSTLLVPASLKEANPITRNSSSKLLVNCKTLKELKQLHCDMMKKGLLCHKPAS 60

Query: 55  VLTKLINFCTQNPTTSSMEHAHLLF--DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVE 112
            L KLI    Q  T  S+++A   F  D      + ++N + RGY+ +    +AI L+V+
Sbjct: 61  NLNKLIASSVQIGTLESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQ 120

Query: 113 LLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172
           +L  G++PD Y+FP LL AC+ +   AL EG Q+H   +K+GL  +++V  +LI+ YAEC
Sbjct: 121 MLVMGIVPDKYTFPFLLSACSKI--LALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAEC 178

Query: 173 SDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232
             V+  R++F+ + E  VVS+ ++I  Y+      EA+SLF ++ E  ++P  VTM+  +
Sbjct: 179 GKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVI 238

Query: 233 SSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ 292
           S+CA L  L+LGK +  YI + G++    +  AL+DM+ KCG +  A  +FD  + K+  
Sbjct: 239 SACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLV 298

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYS 351
            ++ ++  Y  H      +++ +EM++    PD++T L  + AC+  G +  G  ++ Y 
Sbjct: 299 MYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYV 358

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
           +R+  G+         ++D+  + G+ + A +  + +P K T + W +L++      ++ 
Sbjct: 359 LRN--GLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNK-TVVTWNSLIAGLVRDGDME 415

Query: 412 LAKQVIERIFELD 424
           LA ++ + + E D
Sbjct: 416 LAWRIFDEMLERD 428



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 122/237 (51%), Gaps = 8/237 (3%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           ME A  +FD + E D+V +NTM     +      AI LF E+ N G+  D  +   +  A
Sbjct: 414 MELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASA 473

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C  +GA  L+  K +  +  K  ++ +L + T L+++++ C D  +A  +F+ + +  V 
Sbjct: 474 CGYLGA--LDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVS 531

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK---WIH 248
           ++ A I   A       A+ LF E+ E+ +KP DV  ++ L++C+  GS+D G+   W  
Sbjct: 532 AWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSM 591

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATH 304
           E  K +G+  ++     ++D+  + G L++AV +  +M  + +   W +++ A   H
Sbjct: 592 E--KAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKH 646


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 190/526 (36%), Positives = 315/526 (59%), Gaps = 6/526 (1%)

Query: 33  SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNT 92
           +F   K +H   +K    +DL V   L+    +   +  +  A  LF+ +P+ D++ ++ 
Sbjct: 252 AFNVGKSVHGCALKGCYDHDLFVGIALLELYAK---SGEIIDAQRLFEEMPKTDLIPWSL 308

Query: 93  MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
           M   Y++S     A+ LF+ +  + ++P++++F S+L+ACA   + +L+ GKQ+H   +K
Sbjct: 309 MIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACA--SSVSLDLGKQIHSCVLK 366

Query: 153 LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL 212
            GLNSN++V   ++++YA+C ++E + ++FE + +   V++N II  Y +      A++L
Sbjct: 367 FGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNL 426

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           F  + E +++PT+VT  S L + A L +L+ G  IH    K   +K   V  +LIDM+AK
Sbjct: 427 FTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAK 486

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
           CGR++DA   FD M+ +D  +W+AMI  Y+ HG   +++ +F+ M      P+++TF+G+
Sbjct: 487 CGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGV 546

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L ACS+ GL+ +G  +F SM   Y I P I+HY CMV LLGR GR DEA + I E+  + 
Sbjct: 547 LSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQP 606

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452
           + ++WR LL +C  H  + L +   + + E++      +V+LSN+ A AGRW++V ++RK
Sbjct: 607 SVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRK 666

Query: 453 LMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSL 512
            M+ + V K PG S +E   VV  F  GD  H     +   L+ L K+ +  GYVPD + 
Sbjct: 667 YMQKKKVRKEPGLSWVENQGVVHYFSVGDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNA 726

Query: 513 VHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           V   D++D+EKE  L  HSE+LA+ +GL+ TP   +IR++KNLR+C
Sbjct: 727 V-LLDVQDDEKERHLWVHSERLALAYGLIRTPLSCSIRIIKNLRIC 771



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 195/372 (52%), Gaps = 15/372 (4%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           +HA   K     D  V T LI+  +         H   +FD I   D+V +  M   Y+ 
Sbjct: 158 LHACVYKLGHHADAFVGTALIDAYSVRGNVDVARH---VFDDICCKDMVSWTGMVACYAE 214

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
           +     ++ LF ++   G  P++++    LK+C  +G EA   GK +H  A+K   + +L
Sbjct: 215 NCFYEESLQLFNQMRIMGYKPNNFTISGALKSC--LGLEAFNVGKSVHGCALKGCYDHDL 272

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
           +V   L+ LYA+  ++  A+R+FE + +  ++ ++ +I  YA+S R  EAL LF  +++ 
Sbjct: 273 FVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQT 332

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
           ++ P + T  S L +CA   SLDLGK IH  + K+GL+  V V+ A++D++AKCG ++++
Sbjct: 333 SVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENS 392

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
           + +F+ +  ++   W+ +IV Y   G G +++ +F  M++  + P E+T+  +L A +  
Sbjct: 393 MKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASL 452

Query: 340 GLVDEGWNY----FYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
             ++ G         +M +K  +V        ++D+  + GR+++A    D++  K   +
Sbjct: 453 AALEPGLQIHSLTIKTMYNKDTVVA-----NSLIDMYAKCGRINDARLTFDKMN-KRDEV 506

Query: 396 LWRTLLSSCSSH 407
            W  ++   S H
Sbjct: 507 SWNAMICGYSMH 518



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 187/364 (51%), Gaps = 7/364 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K +H   +K     DL     L+NF  Q   ++S++ A  LFD +P+ + + F T+A+GY
Sbjct: 55  KHLHCHILKRGTSLDLFAQNILLNFYVQ---SNSLQDASKLFDEMPQTNTISFVTLAQGY 111

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           SR     +A+   + +   G   + + F +LLK    V  +       LH    KLG ++
Sbjct: 112 SRDHQFHQALHFILRIFKEGHEVNPFVFTTLLK--LLVSMDLAHLCWTLHACVYKLGHHA 169

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           + +V T LI+ Y+   +V+ AR +F++I    +VS+  ++  YA +    E+L LF +++
Sbjct: 170 DAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMR 229

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
               KP + T+  AL SC  L + ++GK +H    K   D  + V  AL++++AK G + 
Sbjct: 230 IMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEII 289

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           DA  +F+ M   D   WS MI  YA   +  +++ +F  M +  V P+  TF  +L AC+
Sbjct: 290 DAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACA 349

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
            +  +D G    +S   K+G+   +     ++D+  + G ++ + +  +ELP ++  + W
Sbjct: 350 SSVSLDLG-KQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRN-DVTW 407

Query: 398 RTLL 401
            T++
Sbjct: 408 NTII 411



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 144/299 (48%), Gaps = 37/299 (12%)

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           D +S+  +L+     GA+ +  GK LHC  +K G + +L+    L+N Y + + ++ A +
Sbjct: 33  DSHSYAHMLQQIIRNGADPIA-GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASK 91

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEA----LSLFRELQERNLKPTDVTMLSALSSCA 236
           +F+ + +   +S+  +   Y+R  + ++A    L +F+E  E N  P   T L       
Sbjct: 92  LFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVN--PFVFTTL-----LK 144

Query: 237 LLGSLDLGK--W-IHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
           LL S+DL    W +H  + K G      V TALID ++  G +D A  VFD++  KD  +
Sbjct: 145 LLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVS 204

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           W+ M+  YA +    +S+ +F +M      P+  T  G L +C   GL  E +N   S  
Sbjct: 205 WTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSC--LGL--EAFNVGKS-- 258

Query: 354 DKYGIVPGIKHYGC----------MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
                V G    GC          +++L  ++G + +A R  +E+P K+  I W  +++
Sbjct: 259 -----VHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMP-KTDLIPWSLMIA 311


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 197/522 (37%), Positives = 307/522 (58%), Gaps = 8/522 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K++HA  IK  L +D  V   L++   +      +E++  +FDR+   D + + T+   Y
Sbjct: 386 KEVHAYAIKQRLDSDTQVGNTLMDMYMK---CRYIEYSAHVFDRMRIKDHISWTTIITCY 442

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           ++S   I A+ +F E    G+  D     S+L+AC+  G E +   KQLHC+AI+ GL  
Sbjct: 443 AQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACS--GLETILLAKQLHCYAIRNGL-L 499

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           +L V   +I++Y EC +V  + ++FE + +  +V++ ++I  YA S   NEAL LF E+Q
Sbjct: 500 DLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQ 559

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
             +++P  V ++S L +   L SL  GK +H ++ +        + ++L+DM++ CG L 
Sbjct: 560 STDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLS 619

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            A+ VF+ +  KD   W+AMI A   HG G ++I +F+ M++  V+PD ++FL LLYACS
Sbjct: 620 GALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACS 679

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H+ LV+EG  Y   M   Y + P  +HY C+VDLLGR+G+ +EAY FI  +P+K   ++W
Sbjct: 680 HSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVW 739

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
            +LL +C  H N  LA     R+ EL+  + G+YV++SN+ A  G+W +   +R  + +R
Sbjct: 740 CSLLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISER 799

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL-KMVGYVPDTSLVHHG 516
           G+ K P CS IE+ N V  F + D  H  +  +   L E+ + L K  GY  DT  V H 
Sbjct: 800 GLRKDPACSWIEIGNNVHTFTTRDNSHRDAERINLKLAEITERLRKEGGYTEDTRSVLH- 858

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           D+ +EEK   L  HSE+LAI+FGL+NT PG  +R+ KNLRVC
Sbjct: 859 DVSEEEKVDVLHRHSERLAISFGLINTRPGMPLRIAKNLRVC 900



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 150/292 (51%), Gaps = 12/292 (4%)

Query: 138 EALEEGKQLHCFAIKLGL--NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
           +A+ +G Q+H  A+  G     + ++ T L+ +Y +C  V  AR +F+ +S   V S+NA
Sbjct: 72  KAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNA 131

Query: 196 IITAYARSSRPNEALSLFRELQ---ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +I AY  S    EAL ++R ++      + P   T+ S L +  + G    G  +H    
Sbjct: 132 LIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAV 191

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM-SGKDTQAWSAMIVAYATHGQGHKSI 311
           K+GLD+   V  ALI M+AKCG LD A+ VF+ M  G+D  +W++MI     +G   +++
Sbjct: 192 KHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQAL 251

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +F  M +A +S +  T +G+L  C+    ++ G    ++   K G    I+    +V +
Sbjct: 252 DLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLG-RELHAALLKSGSEVNIQCNALLV-M 309

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
             + GR+D A R   E+  K   I W ++L SC   N  GL  + IE I E+
Sbjct: 310 YTKCGRVDSALRVFREIDEKDY-ISWNSML-SCYVQN--GLYAEAIEFISEM 357



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 145/300 (48%), Gaps = 7/300 (2%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           ++H + +K  L     V   LI  +       S+M    L+ D     D+  +N+M  G 
Sbjct: 185 EVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHD---GRDVASWNSMISGC 241

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            ++   ++A+ LF  +  + L  + Y+   +L+ C  +    L  G++LH   +K G   
Sbjct: 242 LQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQ--LNLGRELHAALLKSGSEV 299

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           N+  C  L+ +Y +C  V++A R+F  I E   +S+N++++ Y ++    EA+    E+ 
Sbjct: 300 NIQ-CNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEML 358

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
               +P    ++S  S+   LG L  GK +H Y  K  LD   +V   L+DM+ KC  ++
Sbjct: 359 RGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIE 418

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            +  VFD M  KD  +W+ +I  YA   +  +++ +F E  K  +  D +    +L ACS
Sbjct: 419 YSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACS 478


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 206/565 (36%), Positives = 325/565 (57%), Gaps = 40/565 (7%)

Query: 26   SLLPRCTSFRGLK---QIHAVTIKT-HLQNDLNVLTKLIN-FCT-QNPTTSSMEHAHLLF 79
            S+LP C+    L+   +IH   ++   L  +  V T L++ +C  + P     +   L+F
Sbjct: 539  SVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQP-----KKGRLVF 593

Query: 80   DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN-SGLLPDDYSFPSLLKACACVGAE 138
            D +    + ++N +  GY+R++   +A+ LFVE+++ S   P+  +F S+L AC  V  +
Sbjct: 594  DGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPAC--VRCK 651

Query: 139  ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
               + + +H + +K G   + YV   L+++Y+    VE ++ IF  +++  +VS+N +IT
Sbjct: 652  VFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMIT 711

Query: 199  AYARSSRPNEALSLFRELQERN------------------LKPTDVTMLSALSSCALLGS 240
                  R ++AL+L  E+Q R                    KP  VT+++ L  CA L +
Sbjct: 712  GCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAA 771

Query: 241  LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVA 300
            L  GK IH Y  K  L   V V +AL+DM+AKCG L+ A  VFD M  ++   W+ +I+A
Sbjct: 772  LGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMA 831

Query: 301  YATHGQGHKSILMFEEMM------KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD 354
            Y  HG+G +++ +F  M       +  + P+E+T++ +  ACSH+G+VDEG + F++M+ 
Sbjct: 832  YGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKA 891

Query: 355  KYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI-LWRTLLSSCSSHNNLGLA 413
             +G+ P   HY C+VDLLGR+GR+ EAY  I+ +P     +  W +LL +C  H ++   
Sbjct: 892  SHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFG 951

Query: 414  KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNV 473
            +   + +F L+ +    YV++SN+ + AG W+    +RK MK+ GV K PGCS IE  + 
Sbjct: 952  EIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDE 1011

Query: 474  VREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEK 533
            V +F SGD  H  S +L + L+ L + ++  GYVPD S V H +++DEEKE  L  HSE+
Sbjct: 1012 VHKFLSGDASHPQSKELHEYLETLSQRMRKEGYVPDISCVLH-NVDDEEKETMLCGHSER 1070

Query: 534  LAITFGLLNTPPGTTIRVVKNLRVC 558
            LAI FGLLNTPPGTTIRV KNLRVC
Sbjct: 1071 LAIAFGLLNTPPGTTIRVAKNLRVC 1095



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 127/221 (57%), Gaps = 6/221 (2%)

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN--SNLYVCTTLINLYAECSDVEAA 178
           D+++FP++LKA A V    L  GKQ+H    K G    S++ V  +L+N+Y +C D+ AA
Sbjct: 329 DNFAFPAVLKAAAAVHDLCL--GKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAA 386

Query: 179 RRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA-L 237
           R++F++I +   VS+N++I    R      +L LFR +   N+ PT  T++S   +C+ +
Sbjct: 387 RQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHV 446

Query: 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297
            G + LGK +H Y  + G D     N AL+ M+A+ GR++DA ++F    GKD  +W+ +
Sbjct: 447 RGGVRLGKQVHAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTV 505

Query: 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           I + + + +  ++++    M+   V PD +T   +L ACS 
Sbjct: 506 ISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQ 546



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 181/372 (48%), Gaps = 13/372 (3%)

Query: 38  KQIHAVTIKTHLQ--NDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMAR 95
           KQIHA   K      + + V   L+N   +      +  A  +FD IP+ D V +N+M  
Sbjct: 350 KQIHAHVFKFGHAPPSSVAVANSLVNMYGK---CGDLTAARQVFDDIPDRDHVSWNSMIA 406

Query: 96  GYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155
              R +    ++ LF  +L+  + P  ++  S+  AC+ V    +  GKQ+H + ++ G 
Sbjct: 407 TLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRG-GVRLGKQVHAYTLRNG- 464

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
           +   Y    L+ +YA    V  A+ +F       +VS+N +I++ +++ R  EAL     
Sbjct: 465 DLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYL 524

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG-LDKYVKVNTALIDMHAKCG 274
           +    ++P  VT+ S L +C+ L  L +G+ IH Y  + G L +   V TAL+DM+  C 
Sbjct: 525 MIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCK 584

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM-KAQVSPDEITFLGLL 333
           +      VFD +  +    W+A++  YA +    +++ +F EM+ +++  P+  TF  +L
Sbjct: 585 QPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVL 644

Query: 334 YACSHTGLV-DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
            AC    +  D+   + Y ++  +G    +++   ++D+  R GR++ +      +  K 
Sbjct: 645 PACVRCKVFSDKEGIHGYIVKRGFGKDKYVQN--ALMDMYSRMGRVEISKTIFGRMN-KR 701

Query: 393 TPILWRTLLSSC 404
             + W T+++ C
Sbjct: 702 DIVSWNTMITGC 713



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 105/221 (47%), Gaps = 12/221 (5%)

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           ++ +   SS   +A+S +  +      P +    + L + A +  L LGK IH ++ K+G
Sbjct: 301 LLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFG 360

Query: 256 LD--KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
                 V V  +L++M+ KCG L  A  VFD++  +D  +W++MI       +   S+ +
Sbjct: 361 HAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHL 420

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHT-GLVDEGWN-YFYSMRDKYGIVPGIKHY--GCMV 369
           F  M+   V P   T + + +ACSH  G V  G   + Y++R+       ++ Y    +V
Sbjct: 421 FRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-----DLRTYTNNALV 475

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
            +  R GR+++A         K   + W T++SS S ++  
Sbjct: 476 TMYARLGRVNDAKALFGVFDGKDL-VSWNTVISSLSQNDRF 515


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 195/506 (38%), Positives = 283/506 (55%), Gaps = 38/506 (7%)

Query: 88  VLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLH 147
           V +N M  GY+     + A  +F +++ S +  D+++F S++  CA  G   L  GK++H
Sbjct: 255 VAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRL--GKEMH 312

Query: 148 CFAIKLGLNSN----LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
            + +K   N      + V   LI  Y +C  V+ A+ IF  + E  +VS+N I++ Y   
Sbjct: 313 AYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNV 372

Query: 204 SRPNEALSLFRELQERNL-------------------------------KPTDVTMLSAL 232
              +EA S F E+ E+N+                               +P D     A+
Sbjct: 373 RCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAI 432

Query: 233 SSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ 292
            SC++LGSL  G+ +H  + +YG +  +    ALI M+A+CG +D A  +F NM   D  
Sbjct: 433 ISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAI 492

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
           +W+AMI A   HGQG ++I +FEEM+K  + PD I+FL ++ ACSH GLV EG  YF SM
Sbjct: 493 SWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSM 552

Query: 353 RDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGL 412
            + YG+ P  +HY  ++DLL RAG+  EA   ++ +P +    +W  LL+ C  H N+ L
Sbjct: 553 HNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDL 612

Query: 413 AKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNN 472
             +  ER+FEL   H G YV+LSN+ A AG+W D+  +RKLM+DRGV K PGCS IEV N
Sbjct: 613 GIEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVEN 672

Query: 473 VVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSE 532
            V  F  GD  H     +   L++LV E++ +GYVPDT  V H D+E + KE  L  HSE
Sbjct: 673 KVHSFLVGDANHPEVRQIYNYLEQLVLEMRKIGYVPDTKCVLH-DVESDLKEHELSTHSE 731

Query: 533 KLAITFGLLNTPPGTTIRVVKNLRVC 558
           KLA+ +G +  P G T+RV KNLR+C
Sbjct: 732 KLAVAYGFMKLPHGATVRVFKNLRIC 757



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 125/525 (23%), Positives = 200/525 (38%), Gaps = 122/525 (23%)

Query: 12  SPPPKLCTNTPNALSLLPRC-----TSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQN 66
           + P  + T      SLL  C      S+   + +HA  I +  Q   ++L +LI+  ++ 
Sbjct: 2   TTPDSIRTAANRYGSLLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSK- 60

Query: 67  PTTSSMEHAHLLFDRIPEPDIV---------------------------------LFNTM 93
             +S + +A  LFD IP+PDIV                                  +N M
Sbjct: 61  --SSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAM 118

Query: 94  ARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL 153
              YS +     AI LF ++      PD+Y+F S+L A A V AE  +  +QLHC  +K 
Sbjct: 119 ITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALV-AEKEKHCQQLHCAVVKS 177

Query: 154 GLNSNLYVCTTLINLYAEC----------------------------------------S 173
           G      V   LI+ Y +C                                        +
Sbjct: 178 GTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNN 237

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
           D++AA+      S+   V++NA+I+ YA      EA  +FR++    ++  + T  S +S
Sbjct: 238 DLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVIS 297

Query: 234 SCALLGSLDLGKWIHEYIKKY----GLDKYVKVNTALIDMHAKCGR-------------- 275
            CA  G   LGK +H Y  K       D  + VN ALI  + KCG+              
Sbjct: 298 VCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPER 357

Query: 276 -----------------LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
                            +D+A S F+ M  K+  +W  MI   A  G   +++  F  M 
Sbjct: 358 DLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMK 417

Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
                P +  F G + +CS  G +  G    ++   +YG    +     ++ +  R G +
Sbjct: 418 LQGFEPCDYAFAGAIISCSVLGSLKHG-RQLHAQVVRYGYESSLSAGNALITMYARCGVV 476

Query: 379 DEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
           D A+     +P     I W  ++++   H   G   Q IE   E+
Sbjct: 477 DAAHCLFINMPCVDA-ISWNAMIAALGQH---GQGTQAIELFEEM 517



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 122/239 (51%), Gaps = 8/239 (3%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           M+ A   F+ +PE +I+ +  M  G ++      A+  F  +   G  P DY+F   + +
Sbjct: 375 MDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIIS 434

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV- 190
           C+ +G+  L+ G+QLH   ++ G  S+L     LI +YA C  V+AA  +F N+  PCV 
Sbjct: 435 CSVLGS--LKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINM--PCVD 490

Query: 191 -VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWIH 248
            +S+NA+I A  +  +  +A+ LF E+ +  + P  ++ L+ +S+C+  G +  G K+  
Sbjct: 491 AISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFD 550

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHGQ 306
                YG++   +    +ID+  + G+  +A  V ++M  +     W A++     HG 
Sbjct: 551 SMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGN 609



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/411 (20%), Positives = 162/411 (39%), Gaps = 81/411 (19%)

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
           + SLL+ C      +    + +H   I  G     ++   LI++Y++ S +  AR +F+ 
Sbjct: 14  YGSLLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDE 73

Query: 185 ISEPCVVS---------------------------------YNAIITAYARSSRPNEALS 211
           I +P +V+                                 YNA+ITAY+ +   + A+ 
Sbjct: 74  IPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIE 133

Query: 212 LFRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEYIKKYGLDKYVKVNTALIDMH 270
           LF ++Q  N +P + T  S L + AL+   +   + +H  + K G      V  ALI  +
Sbjct: 134 LFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSY 193

Query: 271 AKCGR---------LDDAVSVFDNMSGKDT------------------------------ 291
            KC           + +A  +FD M  +D                               
Sbjct: 194 VKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKL 253

Query: 292 -QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YF 349
             AW+AMI  YA  G   ++  MF +M+ +++  DE TF  ++  C++ G    G   + 
Sbjct: 254 GVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHA 313

Query: 350 YSMRDKYGIVPGIKH--YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
           Y ++      P +       ++    + G++D A    +++P +   + W  +LS   + 
Sbjct: 314 YFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDL-VSWNIILSGYVNV 372

Query: 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458
             +  AK       E+ + +   ++I+ +  A+ G  E+       MK +G
Sbjct: 373 RCMDEAKSFFN---EMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQG 420


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 192/524 (36%), Positives = 309/524 (58%), Gaps = 11/524 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           + +H++ +K     +      L++  ++      ++ A  +F  + +  +V + +M  GY
Sbjct: 316 RAVHSIGVKACFSREDRFCNTLLDMYSK---CGDLDSAKAVFREMSDRSVVSYTSMIAGY 372

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           +R      A+ LF E+   G+ PD Y+  ++L  CA      L+EGK++H +  +  L  
Sbjct: 373 AREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCA--RYRLLDEGKRVHEWIKENDLGF 430

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL- 216
           +++V   L+++YA+C  ++ A  +F  +    ++S+N II  Y+++   NEALSLF  L 
Sbjct: 431 DIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLL 490

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           +E+   P + T+   L +CA L + D G+ IH YI + G      V  +L+DM+AKCG L
Sbjct: 491 EEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGAL 550

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
             A  +FD+++ KD  +W+ MI  Y  HG G ++I +F +M +A +  DEI+F+ LLYAC
Sbjct: 551 LLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYAC 610

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           SH+GLVDEGW +F  MR +  I P ++HY C+VD+L R G L +AYRFI+ +PI     +
Sbjct: 611 SHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATI 670

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
           W  LL  C  H+++ LA++V E++FEL+  + G YV+++N+ A A +WE V  LRK +  
Sbjct: 671 WGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQ 730

Query: 457 RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT--SLVH 514
           RG+ K PGCS IE+   V  F +GD  +  + +++  L ++   +   GY P T  +L+ 
Sbjct: 731 RGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALI- 789

Query: 515 HGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             D E+ EKE AL  HSEKLA+  G++++  G  IRV KNLRVC
Sbjct: 790 --DAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVC 831



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 203/387 (52%), Gaps = 13/387 (3%)

Query: 33  SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNT 92
           S  G +Q+H   +K+      +V   L+ F  +N    S   A  +FD + E D++ +N+
Sbjct: 210 SVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDS---ARKVFDEMTERDVISWNS 266

Query: 93  MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
           +  GY  +    + + +FV++L SG+  D  +  S+   CA   +  +  G+ +H   +K
Sbjct: 267 IINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCA--DSRLISLGRAVHSIGVK 324

Query: 153 LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL 212
              +     C TL+++Y++C D+++A+ +F  +S+  VVSY ++I  YAR     EA+ L
Sbjct: 325 ACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKL 384

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           F E++E  + P   T+ + L+ CA    LD GK +HE+IK+  L   + V+ AL+DM+AK
Sbjct: 385 FEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAK 444

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDEITFLG 331
           CG + +A  VF  M  KD  +W+ +I  Y+ +   ++++ +F  +++ +  SPDE T   
Sbjct: 445 CGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVAC 504

Query: 332 LLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
           +L AC+     D+G   + Y MR+ Y     + +   +VD+  + G L  A+   D++  
Sbjct: 505 VLPACASLSAFDKGREIHGYIMRNGYFSDRHVAN--SLVDMYAKCGALLLAHMLFDDIAS 562

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVI 417
           K   + W  +++    H   G  K+ I
Sbjct: 563 KDL-VSWTVMIAGYGMH---GFGKEAI 585



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 198/409 (48%), Gaps = 15/409 (3%)

Query: 14  PPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSME 73
           P  LC+     L L     S +  K++           D N+ +KL    T       ++
Sbjct: 94  PRTLCS----VLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTN---CGDLK 146

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
            A  +FD +     + +N +    ++S     +I LF ++++SG+  D Y+F  + K+ +
Sbjct: 147 EASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFS 206

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
            +   ++  G+QLH F +K G      V  +L+  Y +   V++AR++F+ ++E  V+S+
Sbjct: 207 SL--RSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISW 264

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           N+II  Y  +    + LS+F ++    ++    T++S  + CA    + LG+ +H    K
Sbjct: 265 NSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVK 324

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
               +  +    L+DM++KCG LD A +VF  MS +   ++++MI  YA  G   +++ +
Sbjct: 325 ACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKL 384

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           FEEM +  +SPD  T   +L  C+   L+DEG      +++   +   I     ++D+  
Sbjct: 385 FEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEN-DLGFDIFVSNALMDMYA 443

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLS----SCSSHNNLGLAKQVIE 418
           + G + EA     E+ +K   I W T++     +C ++  L L   ++E
Sbjct: 444 KCGSMQEAELVFSEMRVKDI-ISWNTIIGGYSKNCYANEALSLFNLLLE 491



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 155/325 (47%), Gaps = 13/325 (4%)

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           D  +  S+L+ CA   +++L++GK++  F    G   +  + + L  +Y  C D++ A R
Sbjct: 93  DPRTLCSVLQLCA--DSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASR 150

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
           +F+ +     + +N ++   A+S   + ++ LF+++    ++    T      S + L S
Sbjct: 151 VFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRS 210

Query: 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVA 300
           +  G+ +H +I K G  +   V  +L+  + K  R+D A  VFD M+ +D  +W+++I  
Sbjct: 211 VHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 270

Query: 301 YATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP 360
           Y ++G   K + +F +M+ + +  D  T + +   C+ + L+  G    +S+  K     
Sbjct: 271 YVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG-RAVHSIGVKACFSR 329

Query: 361 GIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
             +    ++D+  + G LD A     E+  +S      +  S  + +   GLA + + ++
Sbjct: 330 EDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVV----SYTSMIAGYAREGLAGEAV-KL 384

Query: 421 FELDDSHGGD---YVILS--NLCAR 440
           FE  +  G     Y + +  N CAR
Sbjct: 385 FEEMEEEGISPDVYTVTAVLNCCAR 409


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 195/540 (36%), Positives = 315/540 (58%), Gaps = 14/540 (2%)

Query: 25  LSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           +S+   C   R +   + +H++ +K     +      L++  ++      ++ A  +F  
Sbjct: 149 VSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSK---CGDLDSAKAVFRE 205

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           + +  +V + +M  GY+R      A+ LF E+   G+ PD Y+  ++L  CA      L+
Sbjct: 206 MSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCA--RYRLLD 263

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           EGK++H +  +  L  +++V   L+++YA+C  ++ A  +F  +    ++S+N II  Y+
Sbjct: 264 EGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYS 323

Query: 202 RSSRPNEALSLFREL-QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
           ++   NEALSLF  L +E+   P + T+   L +CA L + D G+ IH YI + G     
Sbjct: 324 KNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR 383

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            V  +L+DM+AKCG L  A  +FD+++ KD  +W+ MI  Y  HG G ++I +F +M +A
Sbjct: 384 HVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQA 443

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
            +  DEI+F+ LLYACSH+GLVDEGW +F  MR +  I P ++HY C+VD+L R G L +
Sbjct: 444 GIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIK 503

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           AYRFI+ +PI     +W  LL  C  H+++ LA++V E++FEL+  + G YV+++N+ A 
Sbjct: 504 AYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAE 563

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
           A +WE V  LRK +  RG+ K PGCS IE+   V  F +GD  +  + +++  L ++   
Sbjct: 564 AEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRAR 623

Query: 501 LKMVGYVPDT--SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +   GY P T  +L+   D E+ EKE AL  HSEKLA+  G++++  G  IRV KNLRVC
Sbjct: 624 MIEEGYSPLTKYALI---DAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVC 680



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 203/387 (52%), Gaps = 13/387 (3%)

Query: 33  SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNT 92
           S  G +Q+H   +K+      +V   L+ F  +N    S   A  +FD + E D++ +N+
Sbjct: 59  SVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDS---ARKVFDEMTERDVISWNS 115

Query: 93  MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
           +  GY  +    + + +FV++L SG+  D  +  S+   CA   +  +  G+ +H   +K
Sbjct: 116 IINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCA--DSRLISLGRAVHSIGVK 173

Query: 153 LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL 212
              +     C TL+++Y++C D+++A+ +F  +S+  VVSY ++I  YAR     EA+ L
Sbjct: 174 ACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKL 233

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           F E++E  + P   T+ + L+ CA    LD GK +HE+IK+  L   + V+ AL+DM+AK
Sbjct: 234 FEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAK 293

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDEITFLG 331
           CG + +A  VF  M  KD  +W+ +I  Y+ +   ++++ +F  +++ +  SPDE T   
Sbjct: 294 CGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVAC 353

Query: 332 LLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
           +L AC+     D+G   + Y MR+ Y     + +   +VD+  + G L  A+   D++  
Sbjct: 354 VLPACASLSAFDKGREIHGYIMRNGYFSDRHVAN--SLVDMYAKCGALLLAHMLFDDIAS 411

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVI 417
           K   + W  +++    H   G  K+ I
Sbjct: 412 KDL-VSWTVMIAGYGMH---GFGKEAI 434



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 176/344 (51%), Gaps = 8/344 (2%)

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
           FD +     + +N +    ++S     +I LF ++++SG+  D Y+F  + K+ + +   
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSL--R 58

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
           ++  G+QLH F +K G      V  +L+  Y +   V++AR++F+ ++E  V+S+N+II 
Sbjct: 59  SVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIIN 118

Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
            Y  +    + LS+F ++    ++    T++S  + CA    + LG+ +H    K    +
Sbjct: 119 GYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSR 178

Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
             +    L+DM++KCG LD A +VF  MS +   ++++MI  YA  G   +++ +FEEM 
Sbjct: 179 EDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME 238

Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
           +  +SPD  T   +L  C+   L+DEG      +++   +   I     ++D+  + G +
Sbjct: 239 EEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEN-DLGFDIFVSNALMDMYAKCGSM 297

Query: 379 DEAYRFIDELPIKSTPILWRTLLS----SCSSHNNLGLAKQVIE 418
            EA     E+ +K   I W T++     +C ++  L L   ++E
Sbjct: 298 QEAELVFSEMRVKDI-ISWNTIIGGYSKNCYANEALSLFNLLLE 340



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 122/264 (46%), Gaps = 11/264 (4%)

Query: 182 FENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSL 241
           F+ +     + +N ++   A+S   + ++ LF+++    ++    T      S + L S+
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
             G+ +H +I K G  +   V  +L+  + K  R+D A  VFD M+ +D  +W+++I  Y
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG 361
            ++G   K + +F +M+ + +  D  T + +   C+ + L+  G    +S+  K      
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG-RAVHSIGVKACFSRE 179

Query: 362 IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421
            +    ++D+  + G LD A     E+  +S      +  S  + +   GLA + + ++F
Sbjct: 180 DRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVV----SYTSMIAGYAREGLAGEAV-KLF 234

Query: 422 ELDDSHGGD---YVILS--NLCAR 440
           E  +  G     Y + +  N CAR
Sbjct: 235 EEMEEEGISPDVYTVTAVLNCCAR 258


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 195/538 (36%), Positives = 322/538 (59%), Gaps = 11/538 (2%)

Query: 26  SLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           SLLP C     +     IH   IK  L+ DL V   LIN   +      +  A  +F+++
Sbjct: 245 SLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAK---FGELRSAETIFNQM 301

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
              DIV +N++   + ++K P+ A+ ++ ++ + G++PD  +  SL    A +G      
Sbjct: 302 KVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGN--FLS 359

Query: 143 GKQLHCFAIK-LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            + +H F  +      ++ +   +I++YA+   +++AR++FE +    V+S+N++IT Y+
Sbjct: 360 SRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYS 419

Query: 202 RSSRPNEALSLFRELQERN-LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
           ++   NEA+ ++  ++  +   P   T +S L++ + LG+L  G   H  + K  L   +
Sbjct: 420 QNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDI 479

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            V+T L+DM+ KCG+L DA+S+F  +  + + +W+A+I  +  HG G K++ +F+EM   
Sbjct: 480 FVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSE 539

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
            V PD ITF+ LL ACSH+GLVDEG   F  M++ YGI P +KHYGCMVDL GRAG L++
Sbjct: 540 GVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEK 599

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           A+ F+  +P++    +W  LL +C  H N+ L + V + + +++  + G YV+LSN+ A+
Sbjct: 600 AFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAK 659

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
            G WE VD +R L +DRG+ K PG SSIEV+  +  F++G+  H    ++   L  L  +
Sbjct: 660 LGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIYSELRNLTAK 719

Query: 501 LKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +K +GYVPD + V   D+ED+EKE  L  HSE+LA+ FG+++TPP TT+++ KNLRVC
Sbjct: 720 MKSIGYVPDYNFVLQ-DVEDDEKENILTSHSERLAMAFGIISTPPKTTLQIFKNLRVC 776



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 200/396 (50%), Gaps = 27/396 (6%)

Query: 31  CTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLF 90
           CT     KQ+HA+ + +     + +  KLIN   +      + HA L FD+I   D+  +
Sbjct: 53  CTKVHLAKQLHALLVVSGKTQSIFLSAKLIN---RYAFLGDIPHARLTFDQIQTKDVYTW 109

Query: 91  NTMARGYSRSKTPIRAIFLFVELLNSGLLPDD-YSFPSLLKACACVGAEALEEGKQLHCF 149
           N+M   Y+R      A+  F E L++  L  D Y+FP +++AC       L++G+++HC 
Sbjct: 110 NSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACG-----NLDDGRKVHCL 164

Query: 150 AIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEA 209
            +KLG   ++Y+  + I+ Y+    V  A  +F+N+    + ++NA+I+ +  + +  EA
Sbjct: 165 VLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEA 224

Query: 210 LSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDM 269
           L +F E++ +++    VT+ S L  C  L  +  G  IH Y  K GL+  + V  ALI+M
Sbjct: 225 LEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINM 284

Query: 270 HAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITF 329
           +AK G L  A ++F+ M  +D  +W++++ A+  + +   ++ ++ +M    V PD +T 
Sbjct: 285 YAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTL 344

Query: 330 LGLLYACSHTGLVDEGWNYFYSMRDKYGIVP-------GIKHYGCMVDLLGRAGRLDEAY 382
           + L    +  G        F S R  +G V         I     ++D+  + G +D A 
Sbjct: 345 VSLASVAAELG-------NFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSAR 397

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
           +  + LP+K   I W +L++  S +   GLA + I+
Sbjct: 398 KVFEGLPVKDV-ISWNSLITGYSQN---GLANEAID 429


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 193/512 (37%), Positives = 292/512 (57%), Gaps = 34/512 (6%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           +FD   + ++V++NT+   Y +       + +  E+L  G  PD  +  S + ACA +G 
Sbjct: 280 IFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGD 339

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
             L  GK  H +  + GL     +   +I++Y +C   EAA ++F+++S   VV++N++I
Sbjct: 340 --LSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLI 397

Query: 198 TAYAR-------------------------------SSRPNEALSLFRELQERNLKPTDV 226
               R                               +S   EA+ L RE+Q + +K   V
Sbjct: 398 AGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRV 457

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
           TM+   S+C  LG+LDL KWI+ YI+K  +   +++ TAL+DM ++CG   +A+ VF+NM
Sbjct: 458 TMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENM 517

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
             +D  AW+A I   A  G    +I +F+EM+K  V  D+  F+ LL A SH G VD+G 
Sbjct: 518 EKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGR 577

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
             F++M   +G+ P I HYGCMVDLLGRAG L+EA+  +  +PIK   ++W + L++C  
Sbjct: 578 QLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRK 637

Query: 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCS 466
           H N+  A    E+I +L     G +V+LSN+ A AG+W DV  +R  MK++G  KV G S
Sbjct: 638 HKNVEFANYADEKITQLAPEKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQKVAGSS 697

Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
           SIEV+ ++REF SGD  H+ +  +   L E+   +  VGYVPDT+ V   D++++EKE  
Sbjct: 698 SIEVHGLIREFTSGDESHTENAQIGLMLQEINCRISQVGYVPDTTNVLV-DVDEQEKEHL 756

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           L  HSEKLA+ +GL+NT  G  IRVVKNLR+C
Sbjct: 757 LSRHSEKLAMAYGLINTGKGIPIRVVKNLRMC 788



 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 141/466 (30%), Positives = 246/466 (52%), Gaps = 21/466 (4%)

Query: 1   MATTPSPPITQSPPPKLCTNTPNAL-SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKL 59
           MATT +     S P  L T T     S L  C +   LKQ+H   +K  + N    + KL
Sbjct: 1   MATTTTTLHQSSSPLLLPTTTQKPKNSSLQTCKTLIELKQLHCNMLKKGVFN----INKL 56

Query: 60  INFCTQNPTTSSMEHAHLLF--DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL-NS 116
           I  C Q  T  S+ +A   F  D   +  +   NT+ RGY+ S     AIF+++ ++   
Sbjct: 57  IAACVQMGTHESLNYALNAFKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVM 116

Query: 117 GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVE 176
           G++PD+++FP LL AC+ +   A  EG Q+H   +K+GL  +L+V  +LI+ YA C  V+
Sbjct: 117 GIVPDNFTFPFLLSACSKI--MAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVD 174

Query: 177 AARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236
             R++F+ + E  VVS+ ++I  Y+  +   EA+ LF E+ E  ++P  VTM+ A+S+CA
Sbjct: 175 LGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACA 234

Query: 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSA 296
            L  L+LGK +   + + G+     V  AL+DM+ KCG +     +FD  S K+   ++ 
Sbjct: 235 KLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNT 294

Query: 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDK 355
           ++  Y  HG   + +++ +EM++    PD++T L  + AC+  G +  G  ++ Y  R+ 
Sbjct: 295 IMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNG 354

Query: 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQ 415
              +  I +   ++D+  + G+ + A +  D +  K T + W +L++       L LA  
Sbjct: 355 LERLDNISN--AIIDMYMKCGKREAACKVFDSMSNK-TVVTWNSLIAGLVRDGELELAL- 410

Query: 416 VIERIF-ELDDSHGGDYVILSNLCARAGRWED-VDYLRKLMKDRGV 459
              RIF E+ +S+   +  +     +A  +E+ +D LR+ M+++G+
Sbjct: 411 ---RIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLRE-MQNQGI 452



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 117/237 (49%), Gaps = 8/237 (3%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +E A  +F  +PE ++V +NTM     ++     AI L  E+ N G+  D  +   +  A
Sbjct: 406 LELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASA 465

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C  +GA  L+  K ++ +  K  ++ ++ + T L+++++ C D   A R+FEN+ +  V 
Sbjct: 466 CGYLGA--LDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVS 523

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK---WIH 248
           ++ A I   A       A+ LF E+ ++++K  D   ++ L++ +  G +D G+   W  
Sbjct: 524 AWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAM 583

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA-WSAMIVAYATH 304
           E I  +G+   +     ++D+  + G L++A  +  +M  K     W + + A   H
Sbjct: 584 EKI--HGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKH 638


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 184/475 (38%), Positives = 293/475 (61%), Gaps = 7/475 (1%)

Query: 41  HAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRS 100
           H   I+  L  D +V   LI   T       M  A  +FD I + D+V +N+M  GYS+ 
Sbjct: 150 HCSVIRRGLDEDGHVSHSLI---TMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKM 206

Query: 101 KTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLY 160
           +    A+ LF E++ +G  P++ S  S+L AC  +G   L+ G  +  F ++  +  N +
Sbjct: 207 RHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGD--LKLGTWVEEFVVENKMTLNYF 264

Query: 161 VCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN 220
           + + LI++Y +C D+ +ARRIF+++ +   V++NA+IT YA++    EA+ LF++++  +
Sbjct: 265 MGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSS 324

Query: 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV 280
             P  +T++  LS+CA +G+LDLGK +  Y  + G    V V TAL+DM+AKCG LD+A 
Sbjct: 325 TAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAF 384

Query: 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK--AQVSPDEITFLGLLYACSH 338
            VF  M  K+  +W+AMI A A HGQ  +++ +F+ MM     VSP++ITF+G+L AC H
Sbjct: 385 RVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVH 444

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
            GLVDEG   F+ M   +G+VP I+HY CMVDL  RAG L+EA+ F+  +P K   ++  
Sbjct: 445 AGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILG 504

Query: 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458
            LL +C    N+ ++++V++ + EL+ S+ G+YVI S L A   RW+D   +R LMK +G
Sbjct: 505 ALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKG 564

Query: 459 VLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLV 513
           V K PGCS I++N+ + EF +GD +H    ++ + LD L+ +L+  GY+P+ +L+
Sbjct: 565 VSKTPGCSWIDINSQLHEFHAGDVLHQEWIEIHQILDLLIDDLRREGYIPNANLL 619



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/450 (30%), Positives = 237/450 (52%), Gaps = 28/450 (6%)

Query: 13  PPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSM 72
           P P     +    SLL +C S + LKQIHA  +   +    + L K+ +           
Sbjct: 24  PNPNRQALSDKFNSLLQQCLSIKQLKQIHAQLLTNSIHKPNSFLYKIADL-------KDF 76

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRS--KTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130
            +A + F  I +P    FN M RG S +  K+ + A+  +  +   GL P++ ++P L  
Sbjct: 77  AYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSL-ALEFYSRMKFLGLKPNNLTYPFLFI 135

Query: 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV 190
           AC+ +   A+E G+  HC  I+ GL+ + +V  +LI +YA C  +  AR++F+ IS+  +
Sbjct: 136 ACSNL--LAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDL 193

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY 250
           VS+N++I+ Y++     EA+ LFRE+ E   +P +++++S L +C  LG L LG W+ E+
Sbjct: 194 VSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEF 253

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310
           + +  +     + +ALI M+ KCG L  A  +FD+M  KD   W+AMI  YA +G   ++
Sbjct: 254 VVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEA 313

Query: 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370
           I +F++M  +  +PD+IT +G+L AC+  G +D G        ++ G    +     +VD
Sbjct: 314 IKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASER-GFQDDVYVGTALVD 372

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG- 429
           +  + G LD A+R    +P K+  + W  ++S+ + H   G A++ +  +F+   + GG 
Sbjct: 373 MYAKCGSLDNAFRVFYGMPNKN-EVSWNAMISALAFH---GQAQEALA-LFKSMMNEGGT 427

Query: 430 ------DYVILSNLCARAGRWEDVDYLRKL 453
                  +V + + C  AG    VD  R+L
Sbjct: 428 VSPNDITFVGVLSACVHAGL---VDEGRRL 454


>gi|125540774|gb|EAY87169.1| hypothetical protein OsI_08570 [Oryza sativa Indica Group]
          Length = 613

 Score =  363 bits (933), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 188/494 (38%), Positives = 297/494 (60%), Gaps = 10/494 (2%)

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGY-----SRSKTPIRAIFLFVELLNSGLLPDDYSF 125
           SM +A  +F  + +P+   +NT+ RGY        + P  A+ LFV++++ G+ PD Y+F
Sbjct: 82  SMAYAASIFAALDDPEAFDYNTLMRGYVAGGGGGGRDPAAALRLFVDMVDDGVEPDSYTF 141

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
           P + KACA +GA  L+EG+QL    +KLG   + +   +LI+ Y +C + + ARR FE +
Sbjct: 142 PFVFKACAQLGA--LQEGRQLQGHLVKLGFQRDEHSQNSLISFYGKCGEADLARRAFEQM 199

Query: 186 S--EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
              E    S++A++ AY R+ R  E +  F  +     +P + +M+SALS+CA LG+ D+
Sbjct: 200 EDDEQTTASWSALLAAYTRAGRWAECVESFGAMVRAGWRPDESSMVSALSACAHLGAHDV 259

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303
           G+ IH  + +        ++T+L+DM+AKCG +++A +VFD M  K+   +SAM+   A 
Sbjct: 260 GRSIHCALLRNTARLNTFMSTSLVDMYAKCGCIENAAAVFDAMDDKNAWTYSAMVSGLAL 319

Query: 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK 363
           HG G K++ +F+ M++    PD   ++G+L ACS  GL++EG   F  MR ++ + P  +
Sbjct: 320 HGDGRKALEVFDAMVREGHRPDAAVYVGVLNACSRAGLLEEGLRCFDRMRLEHKLTPNAQ 379

Query: 364 HYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
           HYGCMVDL+ RAGRLD+A   I  +P   T   WR+LL++C  H NL LA++ ++ +  L
Sbjct: 380 HYGCMVDLMARAGRLDDARALIGNMPTGPTDTAWRSLLNACRIHGNLELAERALQELERL 439

Query: 424 DDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGV 483
             ++ GDY+ILS++ ARA   +     R    DRG+ + PG S++EV+     F S D  
Sbjct: 440 GATNAGDYIILSDMHARAHNRDAAAARRTEAVDRGLAQAPGYSAVEVHGATHRFVSQDRS 499

Query: 484 HSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNT 543
           H  + D+ + L ++  +L+  GY PDTS +   D  +EEK   +  HS+KLA+ FGLL+T
Sbjct: 500 HPRADDIYEMLHQMEWQLRFEGYTPDTSELAL-DAGEEEKRRVVAAHSQKLAMAFGLLST 558

Query: 544 PPGTTIRVVKNLRV 557
           P G  +RVV NLR+
Sbjct: 559 PEGAPVRVVTNLRM 572


>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
 gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  363 bits (933), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 188/508 (37%), Positives = 301/508 (59%), Gaps = 37/508 (7%)

Query: 31  CTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLF 90
           CTS + L++IHA  IKT L  D    ++++ FCT       + +A+L+F +I  P++ ++
Sbjct: 6   CTSMKDLQKIHAQLIKTGLAKDTIAASRVLAFCTS--PAGDINYAYLVFTQIRNPNLFVW 63

Query: 91  NTMARGYSRSKTPIRAIFLFVELLNSG--LLPDDYSFPSLLKACACVGAEALEEGKQLHC 148
           NT+ RG+S+S TP  AI LF++++ +     P   ++PS+ KA A +G     EG QLH 
Sbjct: 64  NTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLA--HEGAQLHG 121

Query: 149 FAIKLGLNSNLYVCTTLINLY-------------------------------AECSDVEA 177
             IKLGL ++ ++  T++N+Y                               A+C +++ 
Sbjct: 122 RVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDK 181

Query: 178 ARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL 237
           +RR+F+ +     VS+N++I+ Y R  R  EA+ LF  +QE  +KP++ TM+S L++CA 
Sbjct: 182 SRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACAC 241

Query: 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297
           LG+L  G+WIH+YI K        V TA+IDM++KCG +D A+ VF +   K    W+++
Sbjct: 242 LGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSL 301

Query: 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG 357
           I+  A  G+G++++ +F ++  + + PD ++F+G+L AC+H G+VD   +YF  M + Y 
Sbjct: 302 ILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYK 361

Query: 358 IVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
           I P IKHY CMVD+LGRAG L+EA   I  +P+    I+W +LLSSC  + N+ +AKQ  
Sbjct: 362 IEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNIEMAKQAA 421

Query: 418 ERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREF 477
           +R+ ELD +    +++LSN+ A    +E+    R  +K++ + K PGCS IEVN  V EF
Sbjct: 422 KRVNELDPNESSSFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKEPGCSLIEVNGEVHEF 481

Query: 478 FSGDGVHSYSTDLQKALDELVKELKMVG 505
            +G  +H  S D+  ALD+L   LK +G
Sbjct: 482 VAGGRLHPRSKDIYHALDDLGLTLKEMG 509


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 198/476 (41%), Positives = 279/476 (58%), Gaps = 35/476 (7%)

Query: 116 SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDV 175
           SG LP+ Y+F  + KAC       + EG+Q+   AIK+GL SNL+V   +I +YA    V
Sbjct: 26  SGFLPNRYTFVFVFKACG--NGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLV 83

Query: 176 EAARRIFE-------------------------------NISEPCVVSYNAIITAYARSS 204
           + ARR+F+                                +SE  VVS+  II  Y +  
Sbjct: 84  DEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVG 143

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
              EAL LF E+ +    P + T+ SAL++CA L +LD G+WIH YI K  +    ++  
Sbjct: 144 CFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLA 203

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAW--SAMIVAYATHGQGHKSILMFEEMMKAQV 322
           +L+DM+AKCG +D A  VF +  G   + W  +AMI  YA HG+  ++I +FE+M   +V
Sbjct: 204 SLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKV 263

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
           SP+++TF+ LL ACSH  LV+EG  YF SM   YGI P I+HYGCMVDLLGR+G L EA 
Sbjct: 264 SPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAE 323

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
             +  +P+     +W  LL +C  H ++   +++ + I ELD  H G +V+L+NL + +G
Sbjct: 324 ETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASG 383

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           +W++   +R+ ++  G  K PGCSSIE+N V  +F  GD  H  +  L   LDE+  +LK
Sbjct: 384 QWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLK 443

Query: 503 MVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             GYVP+   V     ++E+KE AL  HSEKLAI FGL+NTPPGT IR+VKNLRVC
Sbjct: 444 NAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVC 499



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 127/240 (52%), Gaps = 6/240 (2%)

Query: 69  TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSL 128
           +  +  A  +FD + E D+V + T+  GY +      A+ LF E+L +G  P++++  S 
Sbjct: 111 SGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASA 170

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF--ENIS 186
           L ACA +   AL++G+ +H +  K  +  N  +  +L+++YA+C +++ A ++F  E   
Sbjct: 171 LAACANL--VALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGL 228

Query: 187 EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK- 245
           +  V  +NA+I  YA   +  EA+ LF +++   + P  VT ++ L++C+    ++ G+ 
Sbjct: 229 KLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRG 288

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA-VSVFDNMSGKDTQAWSAMIVAYATH 304
           +       YG++  ++    ++D+  + G L +A  +VF+     D   W A++ A   H
Sbjct: 289 YFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIH 348


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 190/484 (39%), Positives = 284/484 (58%), Gaps = 3/484 (0%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  LF+ I E D + + TM  G +++     A+ +F  +   G+  D Y+F S+L AC  
Sbjct: 230 ARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGA 289

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           + A  LEEGKQ+H +  +     N++V + L+++Y++C  V  A  +F  +    ++S+ 
Sbjct: 290 LAA--LEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWT 347

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           A+I  Y ++    EA+ +F E+Q   +KP D T+ S +SSCA L SL+ G   H      
Sbjct: 348 AMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVS 407

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
           GL  YV V+ AL+ ++ KCG ++DA  +FD MS  D  +W+A+++ YA  G+  ++I +F
Sbjct: 408 GLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLF 467

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
           E+M+   V PD +TF+G+L ACS +GLVD+G +YF+SM+  + IVP   HY CM+DL  R
Sbjct: 468 EKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSR 527

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
           +G L +A  FI ++P       W TLLS+C    ++ + K   E + +LD  +   YV+L
Sbjct: 528 SGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLL 587

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
            ++ A  G W DV  LR+ M+DR V K PGCS I+  N V  F + D  H +S  + + L
Sbjct: 588 CSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSRTIYEKL 647

Query: 495 DELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
             L  ++   GY PD S V H D+ D EK   L +HSEKLAI FGL+  PP   IR+VKN
Sbjct: 648 QWLNSKMVEEGYKPDVSSVLH-DVADAEKVHMLSHHSEKLAIAFGLIFVPPEMPIRIVKN 706

Query: 555 LRVC 558
           LRVC
Sbjct: 707 LRVC 710



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 205/426 (48%), Gaps = 52/426 (12%)

Query: 61  NFCTQNPTTSSMEHAHL------LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL 114
           N  T N   S++  A L      LF  +P+ D V +N +  G+SR+    RA   +V LL
Sbjct: 76  NLVTGNSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALL 135

Query: 115 N--SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS--------------- 157
              +G+ P   +   ++   + +G  AL  G+Q+HC  ++LG  +               
Sbjct: 136 RDEAGVRPSRITMSGVVMVASALGDRAL--GRQVHCQILRLGFGAYAFTGSPLVDMYAKV 193

Query: 158 ----------------NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
                           N+ +C T+I     C  V  AR +FE I E   +++  ++T   
Sbjct: 194 GPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLT 253

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++   +EAL +FR ++   +     T  S L++C  L +L+ GK IH YI +   +  V 
Sbjct: 254 QNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVF 313

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V +AL+DM++KC  +  A +VF  M  K+  +W+AMIV Y  +G G +++ +F EM +  
Sbjct: 314 VGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDG 373

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           + PD+ T   ++ +C++   ++EG   F+ +    G+ P +     +V L G+ G +++A
Sbjct: 374 IKPDDFTLGSVISSCANLASLEEG-AQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDA 432

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD-----YVILSN 436
           +R  DE+      + W  L+     +   G AK+ I+ +FE   S G       ++ + +
Sbjct: 433 HRLFDEMSFHDQ-VSWTALV---MGYAQFGKAKETID-LFEKMLSKGVKPDGVTFIGVLS 487

Query: 437 LCARAG 442
            C+R+G
Sbjct: 488 ACSRSG 493



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 109/276 (39%), Gaps = 54/276 (19%)

Query: 26  SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S++  C +   L+   Q H + + + L+  + V   L+   T      S+E AH LFD +
Sbjct: 383 SVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALV---TLYGKCGSIEDAHRLFDEM 439

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
              D V +  +  GY++       I LF ++L+ G+ PD  +F  +L AC+         
Sbjct: 440 SFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACS--------- 490

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE-----PCVVSYNAII 197
                    + GL                   V+  R  F ++ +     P    Y  +I
Sbjct: 491 ---------RSGL-------------------VDKGRSYFHSMQQDHDIVPLDDHYTCMI 522

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
             Y+RS    +A    +++      P      + LS+C L G +++GKW  E + K  LD
Sbjct: 523 DLYSRSGWLKQAEEFIKQMPR---CPDAFGWATLLSACRLRGDMEIGKWAAENLLK--LD 577

Query: 258 KYVKVNTALI-DMHAKCGRLDDAVSVFDNMSGKDTQ 292
                +  L+  MHA  G  +D   +   M  +  +
Sbjct: 578 PQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVK 613


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 197/570 (34%), Positives = 343/570 (60%), Gaps = 42/570 (7%)

Query: 26   SLLPRCTSFRG---LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
            +LL  C + R     +QIHA  I+ ++  ++ V T+L++  ++      + +A  +F+R+
Sbjct: 484  TLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSE---CGRLNYAKEIFNRM 540

Query: 83   PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
             E +   +N+M  GY ++     A+ LF ++  +G+ PD +S  S+L +C  V     ++
Sbjct: 541  AERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSC--VSLSDSQK 598

Query: 143  GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
            G++LH F ++  +     +   L+++YA+C  ++ A ++++   +  V+  N +++A+  
Sbjct: 599  GRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVN 658

Query: 203  SSRPNEALSLFRELQERN--------------------------LKPTDV-----TMLSA 231
            S R N+A +LF ++++RN                          +  +D+     TM++ 
Sbjct: 659  SGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTI 718

Query: 232  LSSCALLGSLDLGKWIHEYIKKYG-LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290
            ++ C+ L +L+ G  +H  I K G ++  V + TAL+DM++KCG +  A +VFDNM+GK+
Sbjct: 719  VNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKN 778

Query: 291  TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350
              +W+AMI  Y+ HG   ++++++EEM K  + P+E+TFL +L ACSHTGLV+EG   F 
Sbjct: 779  IVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFT 838

Query: 351  SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
            SM++ Y I    +HY CMVDLLGRAGRL++A  F++++PI+     W  LL +C  H ++
Sbjct: 839  SMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDM 898

Query: 411  GLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEV 470
             + +   +R+FELD  + G YVI+SN+ A AGRW++V+ +R++MK +GV K PG S IE+
Sbjct: 899  DMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEI 958

Query: 471  NNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHG--DMEDEEKEIALR 528
            N+ ++ F +G   H  + ++   L  L  + K +GY+PDTS +     D+++EE+E  L 
Sbjct: 959  NSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLL 1018

Query: 529  YHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             HSE+LA++ GL++ P  +TIRV KNLR+C
Sbjct: 1019 QHSERLALSLGLISLPKKSTIRVFKNLRIC 1048



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/413 (24%), Positives = 203/413 (49%), Gaps = 43/413 (10%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +++H   ++  L +D+ + + L++  ++      +E AH +F  + E + V +N +  GY
Sbjct: 397 RELHGHLVRNLLNSDIILGSALVDMYSK---CGMVEEAHQVFRSLLERNEVSYNALLAGY 453

Query: 98  SRSKTPIRAIFLFVELLNS-GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
            +      A+ L+ ++ +  G+ PD ++F +LL  CA        +G+Q+H   I+  + 
Sbjct: 454 VQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCA--NQRNDNQGRQIHAHLIRANIT 511

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            N+ V T L+++Y+EC  +  A+ IF  ++E    S+N++I  Y ++    EAL LF+++
Sbjct: 512 KNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQM 571

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           Q   +KP   ++ S LSSC  L     G+ +H +I +  +++   +   L+DM+AKCG +
Sbjct: 572 QLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSM 631

Query: 277 D-------------------------------DAVSVFDNMSGKDTQAWSAMIVAYATHG 305
           D                               DA ++FD M  ++T  W++++  YA  G
Sbjct: 632 DYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKG 691

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP-GIKH 364
              +S   F EM+++ +  D +T + ++  CS    ++ G +  +S+  K G V   +  
Sbjct: 692 LKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHG-DQLHSLIIKKGFVNCSVVL 750

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
              +VD+  + G + +A    D +  K+  + W  ++S  S H   G +K+ +
Sbjct: 751 ETALVDMYSKCGAITKARTVFDNMNGKNI-VSWNAMISGYSKH---GCSKEAL 799



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 118/450 (26%), Positives = 205/450 (45%), Gaps = 28/450 (6%)

Query: 4   TPSPPITQSPPPKLCTNTPNALSLLPRC---TSFRGLKQIHAVTIKTHLQNDLNVLTKLI 60
           +P P    + P       P + SL+  C    SF+  K IH   I      D  ++TK++
Sbjct: 55  SPKPTSIHTKPASDVNPLPYS-SLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKIL 113

Query: 61  NFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP 120
               ++     + +A  LF+ +PE ++  +NTM   Y+R    +  + L+  +  SG   
Sbjct: 114 MLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFS 173

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           D ++FPS++KAC  +  E +   +QL    +K GLN NL+V   L++ YA    ++ A  
Sbjct: 174 DKFTFPSVIKAC--IAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVT 231

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
             + I    VV++NA+I  Y +     EA  +F  + +  + P + T  SAL  C  L S
Sbjct: 232 SLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRS 291

Query: 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVA 300
            D GK +H  +   G      V  ALIDM+AKC   +  + VFD M  ++   W+++I A
Sbjct: 292 RDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISA 351

Query: 301 YATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG--- 357
            A  G  + ++++F  M ++    +      +L A +  GL D G       R+ +G   
Sbjct: 352 EAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASA--GLADIG-----KGRELHGHLV 404

Query: 358 ---IVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAK 414
              +   I     +VD+  + G ++EA++    L ++   + +  LL+        G A+
Sbjct: 405 RNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSL-LERNEVSYNALLAGYVQE---GKAE 460

Query: 415 QVIERIFELDDSHGGD-----YVILSNLCA 439
           + +E   ++    G       +  L  LCA
Sbjct: 461 EALELYHDMQSEDGIQPDQFTFTTLLTLCA 490



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 118/509 (23%), Positives = 245/509 (48%), Gaps = 38/509 (7%)

Query: 26  SLLPRCTSFR---GLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S++  C +     G++Q+ +  +K  L  +L V   L++   +      M+ A    D I
Sbjct: 180 SVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYAR---FGWMDDAVTSLDEI 236

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
               +V +N +  GY +  +   A  +F  +L  G+ PD+++F S L+ C  +   + + 
Sbjct: 237 EGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGAL--RSRDG 294

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           GKQ+H   I  G   + +V   LI++YA+C D E+  ++F+ + E   V++N+II+A A+
Sbjct: 295 GKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQ 354

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
               N+AL LF  +QE   K     + S L + A L  +  G+ +H ++ +  L+  + +
Sbjct: 355 FGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIIL 414

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ- 321
            +AL+DM++KCG +++A  VF ++  ++  +++A++  Y   G+  +++ ++ +M     
Sbjct: 415 GSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDG 474

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           + PD+ TF  LL  C++    ++G    ++   +  I   I     +V +    GRL+ A
Sbjct: 475 IQPDQFTFTTLLTLCANQRNDNQG-RQIHAHLIRANITKNIIVETELVHMYSECGRLNYA 533

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG--GDYVILSNLC- 438
               + +  +     W +++     +   G  ++ + R+F+    +G   D   LS++  
Sbjct: 534 KEIFNRMA-ERNAYSWNSMIEGYQQN---GETQEAL-RLFKQMQLNGIKPDCFSLSSMLS 588

Query: 439 -------ARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
                  ++ GR      +R  M++ G+L+V          V+ + ++  G   Y+    
Sbjct: 589 SCVSLSDSQKGRELHNFIVRNTMEEEGILQV----------VLVDMYAKCGSMDYA---W 635

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMED 520
           K  D+ +K+  ++  V  ++ V+ G   D
Sbjct: 636 KVYDQTIKKDVILNNVMVSAFVNSGRAND 664



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 131/287 (45%), Gaps = 45/287 (15%)

Query: 25  LSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVL-TKLINFCTQNPTTSSMEHAHLLFD 80
           ++++  C+S   L+   Q+H++ IK    N   VL T L++  ++     ++  A  +FD
Sbjct: 716 VTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSK---CGAITKARTVFD 772

Query: 81  RIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEAL 140
            +   +IV +N M  GYS+      A+ L+ E+   G+ P++ +F ++L AC+  G   +
Sbjct: 773 NMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTG--LV 830

Query: 141 EEGKQLHCFA-----IKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS-EPCVVSYN 194
           EEG  L  F        +   +  Y C  +++L      +E A+   E +  EP V ++ 
Sbjct: 831 EEG--LRIFTSMQEDYNIEAKAEHYTC--MVDLLGRAGRLEDAKEFVEKMPIEPEVSTWG 886

Query: 195 AIITAYARSSRPNEALSLFRELQERNLK-----PTDVTMLSALSSCALLGSLDLGKW--- 246
           A++ A     R ++ + + R   +R  +     P    ++S + + A       G+W   
Sbjct: 887 ALLGA----CRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAA-------GRWKEV 935

Query: 247 --IHEYIKKYGLDK-----YVKVNTALIDMHAKCGRLDDAVSVFDNM 286
             I + +K  G+ K     ++++N+ +   HA          +++N+
Sbjct: 936 EDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNL 982


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 188/521 (36%), Positives = 304/521 (58%), Gaps = 9/521 (1%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           +H   ++T   +DL V   L++   +      +  AH +FDR+   D+V +  M   Y +
Sbjct: 154 VHGQVVRTGFGSDLFVEAALVDMYAK---CGEIGDAHEVFDRMLIRDVVCWTAMITLYEQ 210

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
           ++ P++A+ LF ++   G L D+ +  S+  A   +G   +     +H +A+  G   ++
Sbjct: 211 AERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRM--AISVHGYAVLNGFIGDV 268

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
            V  +++ +YA+C +VE AR +F+ + E   +S+N++++ Y ++ RP +ALSLF ++Q  
Sbjct: 269 SVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQAS 328

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
              P  VT L  +S+C+ LGS  LG+ +H ++    +D    +  A++DM+ KCG LD A
Sbjct: 329 ECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTA 388

Query: 280 VSVFDN--MSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           V +F+N  +  +D  +W+ +I  Y  HG G +++ +F  M    V P++ITF  +L ACS
Sbjct: 389 VEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACS 448

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H GL+DEG   F  M  K  + P +KHY CMVD+LGRAG L+EA+R I ++P + +  +W
Sbjct: 449 HAGLIDEGRKCFADM-TKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVW 507

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             LL +C  H N  L +     +F+L+  H G YV++SN+ A + +W++V+ +R+ MK R
Sbjct: 508 GALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSR 567

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           G+ K    S IE    V  F + D    Y  ++ + ++ L  E+KMVGYVPD S V H D
Sbjct: 568 GLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLH-D 626

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +E E+KE  L YHSEKLA+ FG++    G  I+V KNLRVC
Sbjct: 627 VEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVC 667



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/449 (26%), Positives = 218/449 (48%), Gaps = 24/449 (5%)

Query: 27  LLPRCTSFRGLKQIHA-VTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR---- 81
           LL  CTS   LK IH+ ++ +  L +  + L +LI   ++      +  A  LFD     
Sbjct: 31  LLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSK---LGDLHSARTLFDHRHHH 87

Query: 82  ----IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
                  P+  L NTM R Y+ +     AI L++ +   G+  +++++P +LK CA    
Sbjct: 88  HHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELG 147

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
                G+ +H   ++ G  S+L+V   L+++YA+C ++  A  +F+ +    VV + A+I
Sbjct: 148 AVF--GEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMI 205

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
           T Y ++ RP +AL LFR++QE      ++T +S  S+   LG   +   +H Y    G  
Sbjct: 206 TLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFI 265

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
             V V  +++ M+AKCG ++ A  VFD M  ++  +W++M+  Y  +G+   ++ +F +M
Sbjct: 266 GDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQM 325

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
             ++  P+ +T L ++ ACS+ G    G   + + +  K  I   +++   ++D+  + G
Sbjct: 326 QASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRN--AIMDMYMKCG 383

Query: 377 RLDEAYRFIDELPIKSTPI-LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
            LD A    +   +    +  W  L+S    H +   A ++  R+ +++     D    S
Sbjct: 384 DLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRM-QVEGVEPNDITFTS 442

Query: 436 NL--CARAGRWEDVDYLRKLMKDRGVLKV 462
            L  C+ AG    +D  RK   D   L V
Sbjct: 443 ILSACSHAGL---IDEGRKCFADMTKLSV 468


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 184/475 (38%), Positives = 293/475 (61%), Gaps = 7/475 (1%)

Query: 41  HAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRS 100
           H   I+  L  D +V   LI   T       M  A  +FD I + D+V +N+M  GYS+ 
Sbjct: 150 HCSVIRRGLDEDGHVSHSLI---TMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKM 206

Query: 101 KTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLY 160
           +    A+ LF E++ +G  P++ S  S+L AC  +G   L+ G  +  F ++  +  N +
Sbjct: 207 RHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGD--LKLGTWVEEFVVENKMTLNYF 264

Query: 161 VCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN 220
           + + LI++Y +C D+ +ARRIF+++ +   V++NA+IT YA++    EA+ LF++++  +
Sbjct: 265 MGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSS 324

Query: 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV 280
             P  +T++  LS+CA +G+LDLGK +  Y  + G    V V TAL+DM+AKCG LD+A 
Sbjct: 325 TAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAF 384

Query: 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK--AQVSPDEITFLGLLYACSH 338
            VF  M  K+  +W+AMI A A HGQ  +++ +F+ MM     VSP++ITF+G+L AC H
Sbjct: 385 RVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVH 444

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
            GLVDEG   F+ M   +G+VP I+HY CMVDL  RAG L+EA+ F+  +P K   ++  
Sbjct: 445 AGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILG 504

Query: 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458
            LL +C    N+ ++++V++ + EL+ S+ G+YVI S L A   RW+D   +R LMK +G
Sbjct: 505 ALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKG 564

Query: 459 VLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLV 513
           V K PGCS I++N+ + EF +GD +H    ++ + LD L+ +L+  GY+P+ +L+
Sbjct: 565 VSKTPGCSWIDINSQLHEFHAGDVLHQEWIEIHQILDLLIDDLRREGYIPNANLL 619



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 137/450 (30%), Positives = 236/450 (52%), Gaps = 28/450 (6%)

Query: 13  PPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSM 72
           P P     +    SLL +C S + LKQIHA  +   +    + L K+ +           
Sbjct: 24  PNPNRQALSDKFNSLLQQCLSIKQLKQIHAQLLTNSIHKPNSFLYKIADL-------KDF 76

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRS--KTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130
            +A + F  I +P    FN M RG S +  K+ + A+  +  +   GL P++ ++P L  
Sbjct: 77  AYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSL-ALEFYSRMKFLGLKPNNLTYPFLFI 135

Query: 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV 190
           AC+ +   A+E G+  HC  I+ GL+ + +V  +LI +YA C  +  AR++F+ IS+  +
Sbjct: 136 ACSNL--LAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDL 193

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY 250
           VS+N++I+ Y++     EA+ LFRE+ E   +P +++++S L +C  LG L LG W+ E+
Sbjct: 194 VSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEF 253

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310
           + +  +     + +ALI M+ KCG L  A  +FD+M  KD   W+AMI  YA +G   ++
Sbjct: 254 VVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEA 313

Query: 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370
           I +F++M  +  +PD+IT +G+L AC+  G +D G        ++ G    +     +VD
Sbjct: 314 IKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASER-GFQDDVYVGTALVD 372

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG- 429
           +  + G LD A+R    +P K   + W  ++S+ + H   G A++ +  +F+   + GG 
Sbjct: 373 MYAKCGSLDNAFRVFYGMP-KKNEVSWNAMISALAFH---GQAQEALA-LFKSMMNEGGT 427

Query: 430 ------DYVILSNLCARAGRWEDVDYLRKL 453
                  +V + + C  AG    VD  R+L
Sbjct: 428 VSPNDITFVGVLSACVHAGL---VDEGRRL 454


>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 194/526 (36%), Positives = 312/526 (59%), Gaps = 7/526 (1%)

Query: 34  FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM 93
            R L+Q HA  + T       +LTKL+   T +    S+ +   LF  + +PD  LFN++
Sbjct: 23  LRRLQQAHAHLVVTGCHRSRALLTKLL---TLSCAAGSIAYTRRLFRSVSDPDSFLFNSL 79

Query: 94  ARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL 153
            +  S     + A+F +  +L+S ++P  Y+F S++KACA +    L  G  +H      
Sbjct: 80  IKASSNFGFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADL--SLLRLGTIVHSHVFVS 137

Query: 154 GLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLF 213
           G  SN +V   L+  YA+      AR++F+ + +  ++++N++I+ Y ++   +EA+ +F
Sbjct: 138 GYASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLASEAVEVF 197

Query: 214 RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273
            +++E   +P   T +S LS+C+ LGSLDLG W+HE I   G+   V + T+L++M ++C
Sbjct: 198 NKMRESGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVLATSLVNMFSRC 257

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
           G +  A +VFD+M+  +  +W+AMI  Y  HG G +++ +F  M    V P+ +T++ +L
Sbjct: 258 GDVGRARAVFDSMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKACGVVPNRVTYVAVL 317

Query: 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS- 392
            AC+H GL++EG   F SM+ +YG+VPG++H+ CMVD+ GR G L+EAY+F+  L  +  
Sbjct: 318 SACAHAGLINEGRLVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVRGLSSEEL 377

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452
            P +W  +L +C  H N  L  +V E +   +  + G YV+LSN+ A AGR + V+ +R 
Sbjct: 378 VPAVWTAMLGACKMHKNFDLGVEVAENLISAEPENPGHYVLLSNMYALAGRMDRVESVRN 437

Query: 453 LMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSL 512
           +M  RG+ K  G S+I+V N    F  GD  H  + ++   LDEL+   K  GY P    
Sbjct: 438 VMIQRGLKKQVGYSTIDVENRSYLFSMGDKSHPETNEIYCYLDELMWRCKDAGYAPAPES 497

Query: 513 VHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             H ++E+EE+E ALRYHSEKLA+ FGL+ T  G T+R+VKNLR+C
Sbjct: 498 AMH-ELEEEEREYALRYHSEKLAVAFGLMKTCHGVTLRIVKNLRIC 542


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 194/538 (36%), Positives = 319/538 (59%), Gaps = 11/538 (2%)

Query: 25  LSLLPRC---TSFRGLKQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFD 80
           L+ +P C   +    LK++H  ++K     D      L N F        S+ +A  +F 
Sbjct: 383 LNAVPVCFDESVLPSLKELHCYSLKQEFVYD----ELLANAFVASYAKCGSLSYAQRVFH 438

Query: 81  RIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEAL 140
            I    +  +N +  GY++S  P  ++   +++ NSGLLPD+++  SLL AC+ +  ++L
Sbjct: 439 GIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKL--KSL 496

Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY 200
             GK++H F I+  L  +L+V  ++++LY  C ++   + +F+ + +  +VS+N +IT +
Sbjct: 497 RLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGH 556

Query: 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
            ++  P  AL LFR++    ++P  ++M++   +C+LL SL LG+  H Y  K+ L+   
Sbjct: 557 LQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNA 616

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            +  ++IDM+AK G +  +  VF+ +  K   +W+AMI+ Y  HG+  ++I +FEEM + 
Sbjct: 617 FIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRT 676

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
             +PD++TFLG+L AC+H+GL+ EG  Y   M+  +G+ P +KHY C++D+LGRAG+LD 
Sbjct: 677 GRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDN 736

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           A R   E+  +    +W +LLS C  H NL + ++V  ++F L+     +YV+LSNL A 
Sbjct: 737 ALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAG 796

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
            G+W+DV  +R+ MK+  + K  GCS IE+N  V  F  G+       +++     L  +
Sbjct: 797 LGKWDDVRQVRQRMKEMSLRKDAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILEMK 856

Query: 501 LKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +  +GY PDTS V H D+ +EEK   LR HSEKLAIT+GL+ T  GTT+RV KNLR+C
Sbjct: 857 IWKMGYRPDTSSVQH-DLSEEEKIEQLRGHSEKLAITYGLIKTSEGTTLRVYKNLRIC 913



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 161/321 (50%), Gaps = 25/321 (7%)

Query: 24  ALSLLPRCTSFR-----GLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLL 78
           AL LL + +  R     G K  H V+  T L++D  + T++I   T      S + +   
Sbjct: 86  ALGLLLQASGKRKDIEMGRKIHHLVSGSTRLRSDDVLCTRII---TMYAMCGSPDDSRSA 142

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN-SGLLPDDYSFPSLLKACACVGA 137
           FD +   ++  +N +   YSR++     + +F+++++ + LLPD+++FP ++KACA  G 
Sbjct: 143 FDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACA--GI 200

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
             +  G  +H   +K GL  +L+V   L++ Y     V  A ++F+ + E  +VS+N++I
Sbjct: 201 SDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMI 260

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
             ++ +              +    P   T+++ L  CA    + +GK +H +  K  LD
Sbjct: 261 RVFSDNG------------DDGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLD 308

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
           K + VN AL+DM++K G + D+  +F   + K+  +W+ M+  ++  G  H +  +  +M
Sbjct: 309 KELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQM 368

Query: 318 MKAQ--VSPDEITFLGLLYAC 336
           +     V  DE+T L  +  C
Sbjct: 369 LAGSEDVKADEVTILNAVPVC 389


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 198/521 (38%), Positives = 310/521 (59%), Gaps = 6/521 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           + IH   IKT    + +V   L++   +      ++ A L F+ IP  D++L + M   Y
Sbjct: 264 QGIHGCAIKTLNDTEPHVGGALLDMYAK---CGDIKDARLAFEMIPYDDVILLSFMISRY 320

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           ++S    +A  LF+ L+ S +LP++YS  S+L+AC       L+ GKQ+H  AIK+G  S
Sbjct: 321 AQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQAC--TNMVQLDFGKQIHNHAIKIGHES 378

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           +L+V   L++ YA+C+D++++ +IF ++ +   VS+N I+  +++S    EALS+F E+Q
Sbjct: 379 DLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQ 438

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              +  T VT  S L +CA   S+     IH  I+K   +    +  +LID +AKCG + 
Sbjct: 439 AAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIR 498

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           DA+ VF ++  +D  +W+A+I  YA HGQ   ++ +F+ M K+ V  ++ITF+ LL  C 
Sbjct: 499 DALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCC 558

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
            TGLV+ G + F SMR  +GI P ++HY C+V LLGRAGRL++A +FI ++P   + ++W
Sbjct: 559 STGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVW 618

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
           R LLSSC  H N+ L +   E+I E++      YV+LSN+ A AG  + V  LRK M++ 
Sbjct: 619 RALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNI 678

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           GV KVPG S +E+   +  F  G   H     +   L+ L  +    GY+PD ++V H D
Sbjct: 679 GVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLH-D 737

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           ++ E+K   L  HSE+LA+ +GL+ TPPG  IR++KNLR C
Sbjct: 738 VDKEQKTRMLWVHSERLALAYGLVMTPPGHPIRILKNLRSC 778



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 181/352 (51%), Gaps = 19/352 (5%)

Query: 22  PNALSL---LPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQ-NPTTSSMEH 74
           PN  SL   L  CT+   L   KQIH   IK   ++DL V   L++F  + N   SS++ 
Sbjct: 343 PNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLK- 401

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
              +F  + + + V +NT+  G+S+S     A+ +F E+  + +     ++ S+L+ACA 
Sbjct: 402 ---IFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACAS 458

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
               ++    Q+HC   K   N++  +  +LI+ YA+C  +  A ++F+++ E  ++S+N
Sbjct: 459 TA--SIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWN 516

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK-K 253
           AII+ YA   +  +AL LF  + + N++  D+T ++ LS C   G ++ G  + + ++  
Sbjct: 517 AIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRID 576

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM-SGKDTQAWSAMIVAYATHGQGHKSIL 312
           +G+   ++  T ++ +  + GRL+DA+    ++ S      W A++ +   H        
Sbjct: 577 HGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRF 636

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGI--VPGI 362
             E++++ +   DE T++ L    +  G +D+      SMR+  G+  VPG+
Sbjct: 637 SAEKILEIE-PQDETTYVLLSNMYAAAGSLDQVALLRKSMRN-IGVRKVPGL 686



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 154/349 (44%), Gaps = 26/349 (7%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  LFDR+PE ++V F T+ + +++      A  LF  L   G   + +   ++LK    
Sbjct: 115 ARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIA 174

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           + A  L  G  +H  A KLG + N +V + LI+ Y+ CS V  A  +F  I     V + 
Sbjct: 175 MDAAGLAGG--VHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWT 232

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           A+++ Y+ +  P  A   FR  Q                SC+LL      + IH    K 
Sbjct: 233 AMVSCYSENDCPENA---FRCAQ----------------SCSLLAISCARQGIHGCAIKT 273

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
             D    V  AL+DM+AKCG + DA   F+ +   D    S MI  YA   Q  ++  +F
Sbjct: 274 LNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELF 333

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
             +M++ V P+E +   +L AC++   +D G    ++   K G    +     ++D   +
Sbjct: 334 LRLMRSSVLPNEYSLSSVLQACTNMVQLDFG-KQIHNHAIKIGHESDLFVGNALMDFYAK 392

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
              +D + +    L   +  + W T++   S     GL ++ +    E+
Sbjct: 393 CNDMDSSLKIFSSLR-DANEVSWNTIVVGFSQS---GLGEEALSVFCEM 437



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 100/215 (46%), Gaps = 11/215 (5%)

Query: 95  RGYSRSKTPIRAIFLFVELLNSGLLP-----DDYSFPSLLKACACVGAEALEEGKQLHCF 149
           RG++     ++  +L  EL +  +LP     D ++    L+ C   G      G+ +H  
Sbjct: 29  RGFAAYAAALQ--WLEDELTSLAILPSVPGVDSFACARQLQGCIARGDA--RGGRAVHGH 84

Query: 150 AIKLGLNS--NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPN 207
            ++ G     +L+    L+N+Y +   + +ARR+F+ + E  +VS+  ++ A+A+     
Sbjct: 85  VVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFE 144

Query: 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267
            A +LFR L+    +     + + L     + +  L   +H    K G D    V + LI
Sbjct: 145 AAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLI 204

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYA 302
           D ++ C  + DA  VF+ +  KD   W+AM+  Y+
Sbjct: 205 DAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYS 239


>gi|242095216|ref|XP_002438098.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
 gi|241916321|gb|EER89465.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
          Length = 596

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 219/551 (39%), Positives = 325/551 (58%), Gaps = 30/551 (5%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKTHLQNDLN----VLTKLINFCTQNPTTSSMEHAHLLFDR 81
           SLLP  ++    KQ HA   + H    L+    +  + ++     P   ++ HA LL   
Sbjct: 18  SLLPHLSTLSHYKQFHA---RLHALGTLHSYPSLRARFLDRLALLPHADALPHALLLLRS 74

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP-----DDYSFPSLLKACA-CV 135
           +P P    FN   RG + S  P R++ L    L     P     D  S    LKA A C 
Sbjct: 75  LPYPATNDFNAALRGLAASPHPARSLLLLAGRLLPAPAPPRPRLDALSLSFALKATARCS 134

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
            A A     QLH   ++LG+ +++ + TTL++ YA+C D+ +ARR+F+ +S   V ++NA
Sbjct: 135 DAFAT---LQLHAILVRLGVAADVRLMTTLLDSYAKCGDLASARRVFDEMSVRDVATWNA 191

Query: 196 IITAYARSSRPNEALSLFRELQE--RNL----KPTDVTMLSALSSCALLGSLDLGKWIHE 249
           ++   A+ + PN AL LFR L    R L    +P +VT+++ALS+CA LG+L  G   H+
Sbjct: 192 LLAGLAQGTEPNLALVLFRRLAGSFRELPPREEPNEVTVVAALSACAQLGALKDGLAAHD 251

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ--AWSAMIVAYATHGQG 307
           + +  G    V+V  ALIDM++KCG L  A+ VF ++  +D    +++A I A + HG G
Sbjct: 252 FARTIGAVGNVRVCNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSMHGHG 311

Query: 308 HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367
             ++ +F+EM  A++ PDE+T+L +L  C+H GLVD+G   F SMR    + P +KHYG 
Sbjct: 312 EDALKLFDEM-PARIEPDEVTYLAVLGGCNHAGLVDDGRRVFDSMR----VPPNMKHYGT 366

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
           +VDLLGRAGRL EA+  I  +P  +  +LW+TLL +   H N+ LA+    ++ +L  + 
Sbjct: 367 IVDLLGRAGRLAEAHDMIMHMPFPADIVLWQTLLGAAKMHGNVDLAELAATKLADLGSNV 426

Query: 428 GGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYS 487
            GDYV+LSN+ A   RW DV  +R  M+   V KVPG S  E++ V+ +F +GD  H   
Sbjct: 427 DGDYVLLSNVYASKSRWVDVGRVRDTMRSNDVKKVPGFSYTEIDGVMHKFINGDKEHLRW 486

Query: 488 TDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGT 547
            ++ +ALDE+  ++  +GY P+TS V H D+ +EEK+ AL YHSEKLAI FGL++TPPG 
Sbjct: 487 REIYRALDEIGSKICELGYEPETSNVLH-DIGEEEKQYALSYHSEKLAIAFGLISTPPGE 545

Query: 548 TIRVVKNLRVC 558
           TIRV+KNLR+C
Sbjct: 546 TIRVIKNLRIC 556


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 190/487 (39%), Positives = 287/487 (58%), Gaps = 4/487 (0%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +E A  LF R  E D V +  M +G +++     AI  F E+   GL  D Y F S+L A
Sbjct: 221 IEDALQLF-RGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPA 279

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C  +GA  + EGKQ+H   I+     ++YV + LI++Y +C  +  A+ +F+ + +  VV
Sbjct: 280 CGGLGA--INEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVV 337

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+ A++  Y ++ R  EA+ +F ++Q   + P   T+  A+S+CA + SL+ G   H   
Sbjct: 338 SWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKA 397

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
              GL  YV V+ +L+ ++ KCG +DD+  +F+ M+ +D  +W+AM+ AYA  G+  ++I
Sbjct: 398 ITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETI 457

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +F++M++  + PD +T  G++ ACS  GLV++G  YF  M  +YGIVP I HY CM+DL
Sbjct: 458 QLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDL 517

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
             R+GRL+EA RFI+ +P     I W TLLS+C +  NL + K   E + ELD  H   Y
Sbjct: 518 FSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGY 577

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
            +LS++ A  G+W+ V  LR+ M+++ V K PG S I+    +  F + D    Y   + 
Sbjct: 578 TLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIY 637

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
             L+EL  ++   GY PDTS VHH D+E+  K   L YHSE+LAI FGL+  P G  IRV
Sbjct: 638 AKLEELNNKIIDNGYKPDTSFVHH-DVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRV 696

Query: 552 VKNLRVC 558
            KNLRVC
Sbjct: 697 GKNLRVC 703



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 115/418 (27%), Positives = 198/418 (47%), Gaps = 56/418 (13%)

Query: 79  FDRIPEPDIVLFNTMARGYSRSK---TPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
           F+++P+ D V +N +  GYS S      ++A    +   ++ L     +  ++LK  +  
Sbjct: 95  FEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANL--TRVTLMTMLKLSSSN 152

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN- 194
           G  +L  GKQ+H   IKLG  S L V + L+ +YA    +  A+++F  + +   V YN 
Sbjct: 153 GHVSL--GKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNS 210

Query: 195 -----------------------------AIITAYARSSRPNEALSLFRELQERNLKPTD 225
                                        A+I   A++    EA+  FRE++ + LK   
Sbjct: 211 LMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQ 270

Query: 226 VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285
               S L +C  LG+++ GK IH  I +     ++ V +ALIDM+ KC  L  A +VFD 
Sbjct: 271 YPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDR 330

Query: 286 MSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
           M  K+  +W+AM+V Y   G+  +++ +F +M ++ + PD  T    + AC++   ++EG
Sbjct: 331 MKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEG 390

Query: 346 WNYFYSMRDKYGIVPGIKHY----GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
                S      I  G+ HY      +V L G+ G +D++ R  +E+ ++   + W  ++
Sbjct: 391 -----SQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDA-VSWTAMV 444

Query: 402 SSCSSHNNLGLAKQVIERIFELDDSHG--GDYVILSNL---CARAGRWEDVDYLRKLM 454
              S++   G A + I+ +F+    HG   D V L+ +   C+RAG  E      KLM
Sbjct: 445 ---SAYAQFGRAVETIQ-LFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLM 498



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 155/286 (54%), Gaps = 12/286 (4%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDR 81
           S+LP C     +   KQIHA  I+T+ Q+ + V + LI+ +C        + +A  +FDR
Sbjct: 275 SVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYC----KCKCLHYAKTVFDR 330

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           + + ++V +  M  GY ++     A+ +F+++  SG+ PD Y+    + ACA V   +LE
Sbjct: 331 MKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANV--SSLE 388

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           EG Q H  AI  GL   + V  +L+ LY +C D++ + R+F  ++    VS+ A+++AYA
Sbjct: 389 EGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYA 448

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEYIKKYGLDKYV 260
           +  R  E + LF ++ +  LKP  VT+   +S+C+  G ++ G ++      +YG+   +
Sbjct: 449 QFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSI 508

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHG 305
              + +ID+ ++ GRL++A+   + M    D   W+ ++ A    G
Sbjct: 509 GHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKG 554



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 115/278 (41%), Gaps = 67/278 (24%)

Query: 134 CVGAEALEEG---KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV 190
           C+G  A  +    K +H   I+       ++   +++ YA       ARR+F+ I +P +
Sbjct: 13  CIGLGARNQSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNL 72

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERN------------------------------ 220
            S+N ++ AY+++   +E  S F +L +R+                              
Sbjct: 73  FSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRD 132

Query: 221 --LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK------ 272
                T VT+++ L   +  G + LGK IH  + K G + Y+ V + L+ M+A       
Sbjct: 133 FSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISD 192

Query: 273 -------------------------CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQG 307
                                    CG ++DA+ +F  M  KD+ +W+AMI   A +G  
Sbjct: 193 AKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGME-KDSVSWAAMIKGLAQNGLA 251

Query: 308 HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
            ++I  F EM    +  D+  F  +L AC   G ++EG
Sbjct: 252 KEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEG 289


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 200/563 (35%), Positives = 315/563 (55%), Gaps = 34/563 (6%)

Query: 27  LLPRCT---SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSS------------ 71
           LL  C    S  G KQ+H++ I +    D  +   L+NF ++     S            
Sbjct: 68  LLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMPRRN 127

Query: 72  ----------------MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN 115
                           +E A  LFD + E +I  +N M  G ++ +   +A+ LF E+  
Sbjct: 128 VMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYG 187

Query: 116 SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDV 175
            G LPD+++  S+L+ CA  G  +L  G+++H   +K G   +  V ++L ++Y +   +
Sbjct: 188 LGFLPDEFTLGSVLRGCA--GLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSL 245

Query: 176 EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSC 235
               ++ +++    VV++N +I   A++  P E L+ +  ++    +P  +T +S LS+C
Sbjct: 246 SDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSAC 305

Query: 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWS 295
           + L +L  G+ IH  + K G    + V ++LI M+++ G L+D++  F +    D   WS
Sbjct: 306 SELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWS 365

Query: 296 AMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355
           +MI AY  HG+G +++ +F +M   ++  +E+TFL LLYACSH+GL ++G  YF  M  K
Sbjct: 366 SMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKK 425

Query: 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQ 415
           Y + P I+HY C+VDLLGRAGRL+EA   I  +P++   I+W+TLL++C  H    +A++
Sbjct: 426 YKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAER 485

Query: 416 VIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVR 475
           + E I +LD      YV+LSN+ A A  W +V  +RK M+DR V K PG S +E+ N+V 
Sbjct: 486 ISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNLVH 545

Query: 476 EFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLA 535
           +F  GD  H    ++   L EL+ ELK  GYVP+   V H DM++EEKE  L +HSEK A
Sbjct: 546 QFSMGDKSHPQYFEIDLYLKELMSELKQHGYVPELGSVLH-DMDNEEKEYNLAHHSEKFA 604

Query: 536 ITFGLLNTPPGTTIRVVKNLRVC 558
           I F L+NT     IRV+KNLRVC
Sbjct: 605 IAFALMNTSENVPIRVMKNLRVC 627



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 153/299 (51%), Gaps = 10/299 (3%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  C   R L   +++HA  +K   +    V + L +   ++ + S  E    L   +
Sbjct: 199 SVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEK---LIKSM 255

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           P   +V +NT+  G +++  P   +  +  +  +G  PD  +F S+L AC+ +    L +
Sbjct: 256 PIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELA--TLGQ 313

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G+Q+H   IK G +S L V ++LI++Y+    +E + + F +     VV ++++I AY  
Sbjct: 314 GQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGF 373

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEYIKKYGLDKYVK 261
             R  EAL LF ++++  ++  +VT LS L +C+  G  + G ++    +KKY L   ++
Sbjct: 374 HGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIE 433

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
             T ++D+  + GRL++A  +  +M  + D   W  ++ A   H +   +  + EE++K
Sbjct: 434 HYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAERISEEIIK 492



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/381 (23%), Positives = 164/381 (43%), Gaps = 52/381 (13%)

Query: 89  LFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYS------------FPSLLKACACVG 136
           L++   R  S   +   ++  F  L N G +   Y             F  LL++C  +G
Sbjct: 17  LYSFTVRSLSMKISSSASLQEFTSLCNDGRIKQAYDTFTSEIWSDPSLFSHLLQSCIKLG 76

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
           +  L  GKQ+H   I  G + + ++   L+N Y++    +++  +F N+    V+S+N +
Sbjct: 77  S--LFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMPRRNVMSFNIL 134

Query: 197 ITAYARSSRPNEALSLFRELQERNLK-------------------------------PTD 225
           I  Y +      A  LF E+ ERN+                                P +
Sbjct: 135 INGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDE 194

Query: 226 VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285
            T+ S L  CA L SL  G+ +H  + K G +    V ++L  M+ K G L D   +  +
Sbjct: 195 FTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKS 254

Query: 286 MSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
           M  +   AW+ +I   A +G   + +  +  M  A   PD+ITF+ +L ACS    + +G
Sbjct: 255 MPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQG 314

Query: 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR-FIDELPIKSTPILWRTLLSSC 404
               ++   K G    +     ++ +  R+G L+++ + F+D        +LW +++++ 
Sbjct: 315 -QQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENF--DVVLWSSMIAAY 371

Query: 405 SSHNNLGLAKQVIERIFELDD 425
             H   G  ++ +E   +++D
Sbjct: 372 GFH---GRGEEALELFHQMED 389


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 196/519 (37%), Positives = 300/519 (57%), Gaps = 34/519 (6%)

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130
           ++E A  LF+ + + D+V ++ +   Y +++    A+ LF E+  +G++ D+    S+L 
Sbjct: 238 NVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLS 297

Query: 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDV--------------- 175
           AC+ +    +  GK +H   +K+G+ + + +   LI++Y+ C +V               
Sbjct: 298 ACSRL--LVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQ 355

Query: 176 ----------------EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
                           E AR +F+++ +   VS++A+I+ YA+  R  E L LF+E+Q  
Sbjct: 356 ISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIE 415

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
             KP +  ++S +S+C  L +LD GKWIH YI+K GL   + + T LI+M+ K G ++DA
Sbjct: 416 GTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDA 475

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
           + VF  +  K    W+A+I+  A +G   KS+  F EM +  V+P+EITF+ +L AC H 
Sbjct: 476 LEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHM 535

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRT 399
           GLVDEG  +F SM  ++ I P IKHYGCMVDLLGRAG L EA   I+ +P+      W  
Sbjct: 536 GLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGA 595

Query: 400 LLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459
           LL +C  + +    +++  ++ EL   H G  V+LSN+ A  G W DV  +R +M+  GV
Sbjct: 596 LLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGV 655

Query: 460 LKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDME 519
           +K PGCS IE +  V EF +GD  H  +  ++  LDE+ K+LK+ GY PDT  V   D++
Sbjct: 656 VKTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKKLKLEGYAPDTREVSL-DID 714

Query: 520 DEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +EEKE  L  HSEKLAI FGL+   P T IR+VKNLR+C
Sbjct: 715 EEEKETTLFRHSEKLAIAFGLIAIDPPTPIRIVKNLRIC 753



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 123/476 (25%), Positives = 217/476 (45%), Gaps = 109/476 (22%)

Query: 7   PPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQN 66
           P  T  P   L    P   + L +C + +   QI +  I +    D    ++L+ F T+ 
Sbjct: 16  PTFTLKPTLTL----PILETHLQKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTEL 71

Query: 67  PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFP 126
           P  + +  ++ +F  I  P+  + NTM +GY +  +P +AI+++  +L S +  D+Y++P
Sbjct: 72  PFIN-INQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYP 130

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE--- 183
            L ++C+   AE   +GK +    +K+G +S++Y+  TLIN+YA C ++  AR++F+   
Sbjct: 131 ILFQSCSIRLAEF--DGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSS 188

Query: 184 -------------------------------------------------NISEPC----- 189
                                                            N+ E C     
Sbjct: 189 VLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNE 248

Query: 190 -----VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
                +VS++A+I+ Y ++    EAL LF+E+    +   +V +LS LS+C+ L  +  G
Sbjct: 249 MKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITG 308

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHA-------------------------------KC 273
           K +H  + K G++ YV +  ALI M++                               KC
Sbjct: 309 KLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKC 368

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
           G ++ A ++FD+M  KD  +WSAMI  YA   +  +++++F+EM      PDE   + ++
Sbjct: 369 GEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVI 428

Query: 334 YACSHTGLVDEG-WNYFYSMRD--KYGIVPG---IKHY---GCMVDLLGRAGRLDE 380
            AC+H   +D+G W + Y  ++  K  I+ G   I  Y   GC+ D L     L+E
Sbjct: 429 SACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEE 484


>gi|449519932|ref|XP_004166988.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g36730-like [Cucumis sativus]
          Length = 516

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 193/498 (38%), Positives = 294/498 (59%), Gaps = 5/498 (1%)

Query: 12  SPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSS 71
           S  PK  +     LSLL  C+S   L +IHA  + + LQND    T+L+     +P+ + 
Sbjct: 21  SSKPKFLSTKHQLLSLLKHCSSTNHLFEIHAQILVSGLQNDSFFTTELLRVAALSPSRNL 80

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
                LLF        + +N + RGYS S +P  AI LF E+   G+ P++ +FP LLKA
Sbjct: 81  SYGCSLLFHCHFHSATMPWNFIIRGYSSSDSPQEAISLFGEMRRRGVRPNNLTFPFLLKA 140

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           CA +    L+EGKQ H  AIK GL+ ++YV  TLIN Y  C  +  AR++F+ ++E  +V
Sbjct: 141 CATLAT--LQEGKQFHAIAIKCGLDLDVYVRNTLINFYGSCKRMSGARKVFDEMTERTLV 198

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+NA+ITA   +   +EA+  F ++     +P + TM+  LS+CA LG+L LG+W+H  +
Sbjct: 199 SWNAVITACVENFCFDEAIDYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQV 258

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
              G+   V++ TA +DM+AK G +  A  VF+ +  K    WSAMI+  A HG  +++I
Sbjct: 259 VGRGMVLNVQLGTAFVDMYAKSGDVGCARHVFNCLKQKSVWTWSAMILGLAQHGFANEAI 318

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +F  M  + + P+ +TF+G+L ACSH GLVD+ ++YF  M   YGI P + HYG MVD+
Sbjct: 319 ELFTNMTSSPIVPNHVTFIGVLCACSHAGLVDKSYHYFNLMERVYGIKPMMIHYGSMVDV 378

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG---LAKQVIERIFELDDSHG 428
           LGRAG++ EAY  I  +P++  PI+WRTLLS+CS  +  G   +A++  +R+ EL+   G
Sbjct: 379 LGRAGQVKEAYELIMSMPVEPDPIVWRTLLSACSGRDVNGGAEVAEEARKRLLELEPKRG 438

Query: 429 GDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYST 488
           G+ V+++N  A  G W+     R+ MKDRG+ K+ G S IE+   +R+FFSG    +   
Sbjct: 439 GNVVMVANKFAELGMWKQAADYRRTMKDRGIKKMAGESCIELGGSLRKFFSGFDSRAAPD 498

Query: 489 DLQKALDELVKELKMVGY 506
            +   LD L   +++  +
Sbjct: 499 GIYDLLDGLNLHMQLTNF 516


>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 597

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 203/543 (37%), Positives = 322/543 (59%), Gaps = 12/543 (2%)

Query: 21  TPNALSLLPRCTSFR--GLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLL 78
           T   LS L R +S +   LK+IHAV I+T      ++LT+L+           M +A  +
Sbjct: 9   TKQMLSELLRASSSKPKQLKKIHAVVIRTGFSEKNSLLTQLLENLV---LVGDMCYARQV 65

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
           FD +P+P I L+NT+ +GY R++ P  ++ L+ ++ + G+ PD++++P ++KA + +G  
Sbjct: 66  FDEMPKPRIFLWNTLFKGYVRNQLPFESVLLYKKMRDLGVRPDEFTYPFVVKAISQLGV- 124

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
            L  G  LH   +K G      V T L+ +Y +  ++ +A  +FE++    +V++NA I 
Sbjct: 125 -LPCGVSLHAHVLKNGFECLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFIA 183

Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
              ++     AL  F ++    ++    T++S LS+C  LGSLD+G+ I++  +K  ++ 
Sbjct: 184 VCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLDIGEEIYDRARKEEIEC 243

Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
            + V  A +DMH KCG  + A  +FD+M  ++  +WS MIV YA +G   +++ +F  M 
Sbjct: 244 NIIVENARLDMHLKCGSTEAARVLFDDMKQRNVVSWSTMIVGYAMNGDSGEALALFTMMQ 303

Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM---RDKYGIVPGIKHYGCMVDLLGRA 375
              + P+ +TFLG+L ACSH GLV+EG  YF  M    DK  + P  +HY CMVDLLGR+
Sbjct: 304 NEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVRLNDK-NLEPRKEHYACMVDLLGRS 362

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
           G L+EAY FI ++ ++    +W  LL +C+ H ++ L ++V + + E     G  +V+LS
Sbjct: 363 GLLEEAYEFIKKMRVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLS 422

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           N+ A AG+W+ VD +R  M+  G  KV   SS+E +  +  F  GD  H  S  + + LD
Sbjct: 423 NIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFDGKIHFFNRGDISHPQSKAIYEKLD 482

Query: 496 ELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNL 555
           E++K+++ +GYVPDT  V H D+E EEKE +L +HSEKLAI FGL+N   G  IRV+KNL
Sbjct: 483 EILKKIRNMGYVPDTGSVFH-DVEMEEKESSLSHHSEKLAIAFGLINGRAGHPIRVMKNL 541

Query: 556 RVC 558
           R C
Sbjct: 542 RTC 544


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 203/539 (37%), Positives = 295/539 (54%), Gaps = 41/539 (7%)

Query: 55  VLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL 114
           + T LI    +N     +  A  + D + E   + +N M  GY        A+ LF ++ 
Sbjct: 225 IWTTLITGYVRN---GDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMR 281

Query: 115 NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN----LYVCTTLINLYA 170
             G+  D+ ++ S++ ACA  G   L  GKQ+H + +K  LN +    L V  TLI LY 
Sbjct: 282 LLGVQVDESTYTSVISACADGGFFLL--GKQVHAYILKNELNPDRDFLLSVGNTLITLYW 339

Query: 171 ECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNL--------- 221
           +   V+ AR+IF  +    ++++N +++ Y  + R  EA S F ++ E+NL         
Sbjct: 340 KYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISG 399

Query: 222 ----------------------KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
                                 +P D     A+++C++LG+L+ G+ +H  I   G D  
Sbjct: 400 LAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDST 459

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           + V  A+I M+A+CG ++ A ++F  M   D  +W++MI A   HG G K+I ++E+M+K
Sbjct: 460 LSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLK 519

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
             + PD  TFL +L ACSH GLV+EG  YF SM + YGI PG  HY  M+DL  RAG+  
Sbjct: 520 EGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFS 579

Query: 380 EAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439
           +A   ID +P ++   +W  LL+ C +H N+ L  +  E++F+L   H G YV+LSN+ A
Sbjct: 580 DAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYA 639

Query: 440 RAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVK 499
             GRW DV   RKLM+DRGV K P CS  EV N V  F   D VH     +   L++L  
Sbjct: 640 SLGRWNDVARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDDTVHPEVLSIYNYLEKLNL 699

Query: 500 ELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           E+K +GY+PDT  V H DME E KE AL  HSEKLA+ FGL+  P G T+RV KNLR+C
Sbjct: 700 EMKKIGYIPDTKYVLH-DMESEHKEYALSTHSEKLAVAFGLMKLPQGATVRVFKNLRIC 757



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 120/545 (22%), Positives = 222/545 (40%), Gaps = 122/545 (22%)

Query: 32  TSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDI---- 87
           +S+   + +H   I +  +   +++ +LI+   +   +S   +A  LFD IP+PD+    
Sbjct: 27  SSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWK---SSDFVYARKLFDEIPQPDVIART 83

Query: 88  -----------------------------VLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118
                                        V +N M  GYS       AI LF  +  +  
Sbjct: 84  TLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANF 143

Query: 119 LPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL----------------------- 155
            PDD++F S+L A   +  +  + G Q+H   +K G+                       
Sbjct: 144 QPDDFTFASVLSASTLIFYDERQCG-QMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLV 202

Query: 156 -----------------NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
                              N ++ TTLI  Y    D+  AR I + ++E   +++NA+I+
Sbjct: 203 SSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMIS 262

Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD- 257
            Y       +AL+LFR+++   ++  + T  S +S+CA  G   LGK +H YI K  L+ 
Sbjct: 263 GYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNP 322

Query: 258 -----------------KYVKVNTA-----------------LIDMHAKCGRLDDAVSVF 283
                            KY KV+ A                 L+  +   GR+++A S F
Sbjct: 323 DRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFF 382

Query: 284 DNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVD 343
             M  K+   W+ MI   A +G G +++ +F +M      P++  F G + ACS  G ++
Sbjct: 383 AQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALE 442

Query: 344 EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
            G    ++     G    +     M+ +  R G ++ A      +P    P+ W +++++
Sbjct: 443 NG-RQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVD-PVSWNSMIAA 500

Query: 404 CSSHNNLGLAKQVIERIFE---LDDSHGGDYVILSNLCARAGRWEDVD-YLRKLMKDRGV 459
              H +   A ++ E++ +   L D     ++ + + C+ AG  E+ + Y   ++++ G+
Sbjct: 501 LGQHGHGVKAIELYEQMLKEGILPDRR--TFLTVLSACSHAGLVEEGNRYFNSMLENYGI 558

Query: 460 LKVPG 464
              PG
Sbjct: 559 --APG 561


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 192/521 (36%), Positives = 304/521 (58%), Gaps = 6/521 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +QIH++TIK   Q+D+ V   LI+  ++      ++ A  + D I E D+V + +M  GY
Sbjct: 365 EQIHSLTIKNGFQSDMYVSGVLIDMYSK---YGWLDKAQRILDMIEEKDVVSWTSMIAGY 421

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            + +    A+  F E+   G+ PD+    S + ACA  G +A+ +G Q+H      G ++
Sbjct: 422 VQHEFCKEALETFKEMQACGIWPDNIGLASAISACA--GIKAVHQGSQIHARVYVSGYSA 479

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           ++ +   L+ LYA C   + A   FE I     +++N +I+ +A+S    EAL +F ++ 
Sbjct: 480 DVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMD 539

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           +   K    T +S++S+ A L  +  GK IH  + K G     +++ ALI ++ KCG ++
Sbjct: 540 QAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIE 599

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           DA   F  M+ ++  +W+ +I   + HG+G +++ +F++M +  + P ++TF+G+L ACS
Sbjct: 600 DAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACS 659

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H GLV+EG  YF SM +++GI P   HY C+VD+LGRAG+LD A RF++E+PI +  ++W
Sbjct: 660 HVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVW 719

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
           RTLLS+C  H NL + +   + + EL+      YV+LSN  A  G+W   D +RK+MKDR
Sbjct: 720 RTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDR 779

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           GV K PG S IEV NVV  FF GD +H  +  +   L  L   L  +GY  +   + H +
Sbjct: 780 GVRKEPGRSWIEVKNVVHAFFVGDRLHPLADQIYNFLSHLNDRLYKIGYKQENYHLFH-E 838

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            E E K+     HSEKLA+ FGL++ P    +RV+KNLRVC
Sbjct: 839 KEKEGKDPTAFVHSEKLAVAFGLMSLPSCMPLRVIKNLRVC 879



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 190/386 (49%), Gaps = 10/386 (2%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           +IHA  I   L     +   LI+   +      +  A  +F+ +   D V +  +  GY+
Sbjct: 63  EIHAKAIICGLSGYRIIGNLLIDLYAKK---GFVRRARRVFEELSVRDNVSWVAVLSGYA 119

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
           ++     A+ L+ E+  SG++P  Y   S+L AC     E  + G+ +H    K G  S 
Sbjct: 120 QNGLGEEAVRLYREMHRSGVVPTPYVLSSILSAC--TKTELFQLGRLIHVQVYKQGFFSE 177

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
            +V   LI+LY  C     A R+F ++     V++N +I+ +A+    + AL +F E+Q 
Sbjct: 178 TFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQL 237

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
             L P  VT+ S L++C+ +G L  GK +H Y+ K G+     +  +L+D++ K G +++
Sbjct: 238 SGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEE 297

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A+ +FD+    +   W+ M+VAY       KS  +F  M+ A V P++ T+  +L  C+H
Sbjct: 298 ALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTH 357

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
           TG +  G    +S+  K G    +   G ++D+  + G LD+A R +D +  K   + W 
Sbjct: 358 TGEIGLG-EQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDV-VSWT 415

Query: 399 TLLSSCSSHNNLGLAKQVIERIFELD 424
           ++++    H      K+ +E   E+ 
Sbjct: 416 SMIAGYVQHE---FCKEALETFKEMQ 438



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 124/466 (26%), Positives = 216/466 (46%), Gaps = 15/466 (3%)

Query: 21  TPNALS-LLPRCTS---FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           TP  LS +L  CT    F+  + IH    K    ++  V   LI+   +     S   A 
Sbjct: 142 TPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLR---CRSFRLAD 198

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +F  +   D V FNT+  G+++     RA+ +F E+  SGL PD  +  SLL AC+ VG
Sbjct: 199 RVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVG 258

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
              L +GKQLH + +K G++ +  +  +L++LY +  D+E A +IF++     VV +N +
Sbjct: 259 D--LRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLM 316

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           + AY +     ++  +F  +    ++P   T    L +C   G + LG+ IH    K G 
Sbjct: 317 LVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGF 376

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
              + V+  LIDM++K G LD A  + D +  KD  +W++MI  Y  H    +++  F+E
Sbjct: 377 QSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKE 436

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M    + PD I     + AC+    V +G +  ++     G    +  +  +V L  R G
Sbjct: 437 MQACGIWPDNIGLASAISACAGIKAVHQG-SQIHARVYVSGYSADVSIWNGLVYLYARCG 495

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSN 436
              EA+   + +  K   I W  L+S  +     GL ++ ++   ++D + G  Y + + 
Sbjct: 496 ISKEAFSSFEAIEHKEG-ITWNGLISGFAQS---GLYEEALKVFMKMDQA-GAKYNVFTF 550

Query: 437 LCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDG 482
           + + +      D  +       V+K    S  E++N +   +   G
Sbjct: 551 VSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCG 596



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 159/332 (47%), Gaps = 3/332 (0%)

Query: 90  FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCF 149
           FN    G+     P + + LF       ++     F   L+AC   G        ++H  
Sbjct: 9   FNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRGSGRR-WPLVPEIHAK 67

Query: 150 AIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEA 209
           AI  GL+    +   LI+LYA+   V  ARR+FE +S    VS+ A+++ YA++    EA
Sbjct: 68  AIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEA 127

Query: 210 LSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDM 269
           + L+RE+    + PT   + S LS+C       LG+ IH  + K G      V  ALI +
Sbjct: 128 VRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISL 187

Query: 270 HAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITF 329
           + +C     A  VF +M   D+  ++ +I  +A  G G +++ +F+EM  + +SPD +T 
Sbjct: 188 YLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTI 247

Query: 330 LGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389
             LL ACS  G + +G    +S   K G+       G ++DL  ++G ++EA +  D   
Sbjct: 248 ASLLAACSAVGDLRKG-KQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGD 306

Query: 390 IKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421
            ++  +LW  +L +    ++L  +  +  R+ 
Sbjct: 307 -RTNVVLWNLMLVAYGQIDDLAKSFDIFYRML 337


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 199/541 (36%), Positives = 314/541 (58%), Gaps = 21/541 (3%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTT-SSMEHAHLLFDRIP 83
           L +  +C  F   +++         + D       I  C Q+     SM+    LFD  P
Sbjct: 154 LDMYAKCGQFERARRVFGAMA----ERDAVSWNIAIGACIQSGDILGSMQ----LFDESP 205

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE- 142
             D   +NT+  G  RS     A+     +  +G++ + Y++ +   A    G   L + 
Sbjct: 206 LRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYST---AFVLAGMLLLPDL 262

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN---ISEPCVVSYNAIITA 199
           G+QLH   +   L  + +V ++L+++Y +C  +EAA  +F++   ++     +++ ++  
Sbjct: 263 GRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAG 322

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK--YGLD 257
           Y ++ R  EAL LFR +    +     T+ S  ++CA +G ++ G+ +H  ++K  Y LD
Sbjct: 323 YVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLD 382

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
               + +A++DM+AKCG L+DA S+FD    K+   W++M+ +YA+HGQG  +I +FE M
Sbjct: 383 --APLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFERM 440

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
              +++P+EIT +G+L ACSH GLV EG  YF  M+++YGIVP I+HY C+VDL GR+G 
Sbjct: 441 TAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGL 500

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437
           LD+A  FI+E  I    I+W+TLLS+C  H +   AK   E++ +L+    G YV+LSN+
Sbjct: 501 LDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSYVMLSNI 560

Query: 438 CARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDEL 497
            A   +W D   LR  M++R V K PG S I + N V  F +GD  H  S ++   L++L
Sbjct: 561 YATNNKWHDTFELRVSMQERKVRKQPGRSWIHLKNTVHTFVAGDASHPQSAEIYAYLEKL 620

Query: 498 VKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRV 557
           V+ LK +GY   T LV H D+EDE++E AL++HSEKLAI FG+++TP GT +R+ KNLRV
Sbjct: 621 VERLKEIGYTSRTDLVVH-DVEDEQRETALKFHSEKLAIAFGIISTPSGTPLRIFKNLRV 679

Query: 558 C 558
           C
Sbjct: 680 C 680



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 182/387 (47%), Gaps = 51/387 (13%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSG-LLPDDYSFPSLLKACA 133
           A  +FD  P     ++     G +R       +  F E+L  G   P+ +   ++++ CA
Sbjct: 64  ARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCA 123

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE------ 187
            +G   +E GK++H + ++ G++ ++ +C  ++++YA+C   E ARR+F  ++E      
Sbjct: 124 GMGD--VESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSW 181

Query: 188 -----PCV--------------------VSYNAIITAYARSSRPNEALSLFRELQERNLK 222
                 C+                     S+N II+   RS    +ALS  R + +  + 
Sbjct: 182 NIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVV 241

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
               T  +A     +L   DLG+ +H  +    L+    V ++L+DM+ KCG L+ A SV
Sbjct: 242 FNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASV 301

Query: 283 FDNMS--GKDTQ-AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
           FD+ S   +D   AWS M+  Y  +G+  +++ +F  M++  V+ D  T   +  AC++ 
Sbjct: 302 FDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANV 361

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKH------YGCMVDLLGRAGRLDEAYRFIDELPIKST 393
           G+V++G       R  +G V  + +         +VD+  + G L++A    D    K+ 
Sbjct: 362 GMVEQG-------RQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNI 414

Query: 394 PILWRTLLSSCSSHNNLGLAKQVIERI 420
            + W ++L S +SH    +A ++ ER+
Sbjct: 415 AV-WTSMLCSYASHGQGRIAIELFERM 440


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 191/538 (35%), Positives = 322/538 (59%), Gaps = 9/538 (1%)

Query: 25  LSLLPRC---TSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           L+ +P C   +    LK++H  ++K    ++  ++     F        S+ +AH +F  
Sbjct: 396 LNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANA--FVASYAKCGSLSYAHRVFCS 453

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           I    +  +N +  GYS+S  P  ++  + ++ +SGLLPD ++  SLL AC+ +  ++L+
Sbjct: 454 IRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQI--KSLK 511

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            GK++H   I+  L  + +V  +L++LY  C ++  A  +F+ + +  +VS+N ++  Y 
Sbjct: 512 LGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYL 571

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++  P  ALSLFR++    ++P +++M+S   +C+LL SL LG+  H Y  K  L+    
Sbjct: 572 QNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAF 631

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           +  ++IDM+AK G + ++  VF+ +  +   +W+AM++ Y  HG+  ++I +FEEM +  
Sbjct: 632 IACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTG 691

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
             PDE+TFLG+L AC+H+GLV EG  Y   M+  +G+ P +KHY C++D+L RAG+LDEA
Sbjct: 692 HCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEA 751

Query: 382 YRF-IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
            +   +E+  +    +W  LLSSC  H NL + +++  ++F  +     +YV+LSNL A 
Sbjct: 752 LKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIAAKLFVSEPEKPENYVLLSNLYAG 811

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
           +G+W++V  +R+ MK+  + K  GCS IE+N  V  F +G+       +++     L +E
Sbjct: 812 SGKWDEVRKVRQRMKEMSLRKDAGCSWIELNGKVFSFVAGESSLDGFEEIKSLWSVLERE 871

Query: 501 LKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +  +GY PDTS V H D+ +EEK   LR HSEKLAIT+GL+ T  GTT+RV KNLR+C
Sbjct: 872 IGKMGYRPDTSSVQH-DLSEEEKTEQLRGHSEKLAITYGLIRTSEGTTLRVYKNLRIC 928



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 162/307 (52%), Gaps = 13/307 (4%)

Query: 38  KQIHA-VTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           ++IH  V+    L ND  + T++I   T      S + +  +FD + + ++  +N +   
Sbjct: 101 RKIHQLVSESARLSNDDVLCTRVI---TMYSMCGSPDDSRSVFDALRKKNLFQWNAVISS 157

Query: 97  YSRSKTPIRAIFLFVELLN-SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155
           YSR++     + +FV+++  SGLLPD+++FP ++KACA  G   ++ G  +H   +K  L
Sbjct: 158 YSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACA--GVSEVQVGLAVHGLVVKTRL 215

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
             +++V   L++ Y     V  A R+F+ + E  +VS+N++I  ++ +    E   L  +
Sbjct: 216 VEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQ 275

Query: 216 LQERN----LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271
           + E++      P   T+ + L  CA    + +GK +H    K  LDK V VN AL+DM++
Sbjct: 276 MMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYS 335

Query: 272 KCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK--AQVSPDEITF 329
           KCG ++DA  +F   + K+  +W+ M+  ++  G  HK+  +  +M+     +  DE+T 
Sbjct: 336 KCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTI 395

Query: 330 LGLLYAC 336
           L  +  C
Sbjct: 396 LNAVPVC 402


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 186/521 (35%), Positives = 307/521 (58%), Gaps = 6/521 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           + IH    K   ++D  V   LI    +   +  +E  + +F+ +  PD+V +N +  G+
Sbjct: 172 QSIHGCICKYGFESDNLVSNPLIMMYMK---SRCVEDGNKVFEAMTNPDLVSWNALLSGF 228

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
             S+T  R   +F ++L  G  P+ ++F S+L++C+ +     E GKQ+H   IK   + 
Sbjct: 229 YDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDP--EFGKQVHAHIIKNSSDD 286

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           + +V T L+++YA+   +E A   F+ +    + S+  II+ YA++ +  +A+  FR++Q
Sbjct: 287 DDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQ 346

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              +KP + T+ S LS C+ + +L+ G+ +H    K G    + V +AL+D++ KCG ++
Sbjct: 347 REGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCME 406

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            A ++F  +  +D  +W+ +I  Y+ HGQG K++  F  M+   + PDE TF+G+L ACS
Sbjct: 407 HAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACS 466

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
             GLV+EG   F SM   YGI P I+HY CMVD+LGRAG+ +E   FI+E+ +    ++W
Sbjct: 467 FMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIW 526

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
            T+L +C  H N+   ++  +++FE++      Y++LSN+ A  GRW+DV  +R LM  R
Sbjct: 527 ETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSR 586

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           G+ K PGCS +EV+  V  F S DG H    ++   LD+L + L  +GYVP T +V H +
Sbjct: 587 GIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLDKLGQSLMSIGYVPKTEVVLH-N 645

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           + ++EK   L YHSE+LA++F LL+T     IR+ KNLR+C
Sbjct: 646 VSNKEKMEHLYYHSERLALSFALLSTNAVKPIRIFKNLRIC 686



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 142/269 (52%), Gaps = 8/269 (2%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           ME A  LF  +PE + V +N +  GY++     + + LF ++         ++  ++LK 
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           CA  G+  L EGK LH  A++ G   + ++  +L+++Y++C  V  A ++F  I  P VV
Sbjct: 61  CANTGS--LREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVV 118

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           +++A+IT   +     EA  LF  ++ +  +P   T+ S +S+   +G L  G+ IH  I
Sbjct: 119 AWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCI 178

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY---ATHGQGH 308
            KYG +    V+  LI M+ K   ++D   VF+ M+  D  +W+A++  +    T G+G 
Sbjct: 179 CKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGP 238

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACS 337
           +   +F +M+     P+  TF+ +L +CS
Sbjct: 239 R---IFYQMLLEGFKPNMFTFISVLRSCS 264



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 86/166 (51%)

Query: 175 VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSS 234
           +E A R+F  + E   VS+NA++  YA+     + L LF +++E   K +  T+ + L  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 235 CALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAW 294
           CA  GSL  GK +H    + G +    +  +L+DM++KCG + DA+ VF  +   D  AW
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 295 SAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG 340
           SAMI      G G ++  +F  M +    P++ T   L+   ++ G
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMG 166



 Score = 39.7 bits (91), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 77/174 (44%), Gaps = 10/174 (5%)

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A  +F  M  K+  +W+A++  YA  G G K + +F +M + +    + T   +L  C++
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGC-MVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           TG + EG    +++  + G     +  GC +VD+  + G + +A +   ++      + W
Sbjct: 64  TGSLREG-KVLHALALRSGCEID-EFLGCSLVDMYSKCGTVYDALKVFTKIR-NPDVVAW 120

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGG--DYVILSNLCARAGRWEDVDY 449
             +++      +     Q    +F L    G   +   LS+L + A    D+ Y
Sbjct: 121 SAMITGLDQQGH----GQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRY 170


>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
 gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
          Length = 795

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 193/539 (35%), Positives = 328/539 (60%), Gaps = 12/539 (2%)

Query: 26  SLLPRCTSFRGLKQ---IHAVTIK-THLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           ++L  CT+   L++   +HA TI  T L  D  V T LIN   +     ++E A  +F +
Sbjct: 223 TVLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALINLYGK---CGALEEAFGVFVQ 279

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           I   DIV +++M   +++S     AI L + +   G+ P++ +F ++L+A   +  +A +
Sbjct: 280 IDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSL--KAFQ 337

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            GK++H   ++ G + ++ + + L+ +Y     VE AR IFE+  E  VVS++++I  Y+
Sbjct: 338 YGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVETARSIFESSRERDVVSWSSMIAGYS 397

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++  P  ALSLFRE++   ++P  VT +SA+ +CA +G+L  G  +HE ++  GLDK V 
Sbjct: 398 QNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLHERVRCLGLDKDVP 457

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V TAL++++ KCGRL++A +VF  M  K+   W+++ +AY  +G G +S+ +   M    
Sbjct: 458 VATALVNLYGKCGRLEEAEAVFLGMKKKNLLTWTSIAMAYGQNGHGSRSLKLLHGMELQG 517

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           + PD I F+ +L +C++ G + +G +Y+  M   +GI P ++H GCMVD+LGRAG+L+ A
Sbjct: 518 MKPDGIVFVAILVSCNYAGQMSKGLHYYNLMTQDFGIAPAVEHCGCMVDILGRAGKLEAA 577

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
            + I+ +  +S+ + W  LL++C +HN+   A +  E+IF+L+  +   YV+LS++   A
Sbjct: 578 EQLINTMKFESS-LAWMMLLTACKAHNDTARAARAAEKIFQLEPKNATPYVLLSSVFCAA 636

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGV--HSYSTDLQKALDELVK 499
           G WE  +  R+ M  RGV ++ G SSIE+ + V EF +   V  H    ++  AL++L +
Sbjct: 637 GSWEAAEETRRRMDGRGVQRLLGRSSIEIGDRVHEFVAASDVLPHHLVGEIFAALEKLGR 696

Query: 500 ELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           E++  GYVPD + V   D+E+  KE A+ YHSE LA+  G+++TP GT +R+ KNLR+C
Sbjct: 697 EMQGAGYVPDATAVRLRDVEEGGKENAVPYHSEMLALGLGIISTPAGTPLRITKNLRMC 755



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 168/319 (52%), Gaps = 9/319 (2%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLI-NFCTQNPTTSSMEHAHL-LFD 80
           ++L  C+  R L   K++H + ++  L  D      L+ N   Q           L +FD
Sbjct: 15  AILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALDVFD 74

Query: 81  RIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEA- 139
           R+ + ++V + ++   ++ +     A+ LF ++L SG+ PD  +F S+L   +  G E  
Sbjct: 75  RMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWS--GRERN 132

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
           L+EGK++H   ++ G   +  V   ++ +Y +C DVE A  +F++I +P V S+  II A
Sbjct: 133 LDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAA 192

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY-IKKYGLDK 258
           YA++    E L L   + +  +KP   T  + L +C  +G+L+  K +H   I   GLD+
Sbjct: 193 YAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDR 252

Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
              V TALI+++ KCG L++A  VF  +  KD  +WS+MI A+A  GQ   +I +   M 
Sbjct: 253 DAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMD 312

Query: 319 KAQVSPDEITFLGLLYACS 337
              V P+ +TF+ +L A +
Sbjct: 313 LEGVRPNNVTFVNVLEAVT 331



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 147/298 (49%), Gaps = 10/298 (3%)

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSN-----LYVCTTLINLYAECSDVEAARRIFENISE 187
           AC    AL EGK++H   ++  L  +       +   +I +Y  C   + A  +F+ + +
Sbjct: 19  ACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALDVFDRMKD 78

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL-SSCALLGSLDLGKW 246
             VV++ ++I+A+  +    +A+ LFR++    + P  +T  S L        +LD GK 
Sbjct: 79  QNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGRERNLDEGKR 138

Query: 247 IHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ 306
           +H +I + G +    V   +++M+ KCG ++ A +VFD++   +  +W+ +I AYA +G 
Sbjct: 139 VHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYAQNGH 198

Query: 307 GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG 366
             + + +   M +A V PD  TF  +L AC+  G ++E      +     G+        
Sbjct: 199 CMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDAAVGT 258

Query: 367 CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
            +++L G+ G L+EA+    ++  K   + W +++++ +     G AK  I+ +  +D
Sbjct: 259 ALINLYGKCGALEEAFGVFVQIDNKDI-VSWSSMIAAFAQS---GQAKSAIQLLMLMD 312


>gi|115465559|ref|NP_001056379.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|52353535|gb|AAU44101.1| unknown protein [Oryza sativa Japonica Group]
 gi|113579930|dbj|BAF18293.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|215737011|dbj|BAG95940.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 687

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 202/537 (37%), Positives = 314/537 (58%), Gaps = 8/537 (1%)

Query: 23  NALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           +A++      S+   +Q H   IK  L     V + +++   Q    + M+ A  +FD +
Sbjct: 118 SAVAATAHVRSYDMGRQCHGYAIKAGLAEHPYVCSAVLHMYCQ---CAHMDEAVKVFDNV 174

Query: 83  PEPDIVLFNTMARGY-SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
              ++  FN+M  G+  R +       +   + N G   D  S+ ++L  CA      L 
Sbjct: 175 SSFNVFAFNSMINGFLDRGQMDGSTSIVRSMVRNVGQW-DHVSYVAVLGHCASTKEVVL- 232

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G Q+H  A+K  L  N+YV + L+++Y +C     A R+FE + E  +VS+ AI+TAY 
Sbjct: 233 -GSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYT 291

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++    +AL LF +++   ++P + T   AL+SCA L +L  G  +     K G    + 
Sbjct: 292 QNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLP 351

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V  AL++M++K G ++DA  VF +M  +D  +W+++I+ YA HG+  +++  F +M+ A+
Sbjct: 352 VCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAE 411

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
             P  +TF+G+L AC+  GLVDEG+ Y   M  + G+ PG +HY CMV LL R GRLDEA
Sbjct: 412 EVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRLDEA 471

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
            RFI+   I +  + WR+LLSSC  + N GL  +V E+IF+L     G YV+LSN+ A+A
Sbjct: 472 ERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQLKPKDVGTYVLLSNMYAKA 531

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
            RW+ V  +R+LM++ GV K PG S I+V + V  F S D  H Y   + K L EL+ ++
Sbjct: 532 NRWDGVVKVRRLMRELGVRKEPGVSWIQVGSEVHVFTSEDKKHPYMEQITKKLQELIDKI 591

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K++GYVP+ ++  H D+EDE+KE  L YHSEKLA+ FGL+ TP G  IR++KN+R+C
Sbjct: 592 KVIGYVPNIAVALH-DVEDEQKEEHLMYHSEKLALAFGLIRTPKGEAIRIMKNVRIC 647



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 199/397 (50%), Gaps = 29/397 (7%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +FD +P  + V  N +  GY+ S     A+ L   + + GL  ++Y   S + A A 
Sbjct: 69  ARQVFDAMPSRNPVSGNLLMSGYASSGRHRDALALL-RVADFGL--NEYVLSSAVAATAH 125

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           V   + + G+Q H +AIK GL  + YVC+ ++++Y +C+ ++ A ++F+N+S   V ++N
Sbjct: 126 V--RSYDMGRQCHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFN 183

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTD-VTMLSALSSCALLGSLDLGKWIHEYIKK 253
           ++I  +    + + + S+ R +  RN+   D V+ ++ L  CA    + LG  +H    K
Sbjct: 184 SMINGFLDRGQMDGSTSIVRSMV-RNVGQWDHVSYVAVLGHCASTKEVVLGSQVHTQALK 242

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
             L+  V V +AL+DM+ KC    +A  VF+ +  K+  +W+A++ AY  +     ++ +
Sbjct: 243 RRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQL 302

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG------C 367
           F +M    V P+E T+   L +C+    +  G N   +   K G      H+G       
Sbjct: 303 FLDMEMEGVRPNEFTYAVALNSCAGLATLKNG-NALGACTMKTG------HWGLLPVCNA 355

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIER----IFEL 423
           ++++  ++G +++A R    +P +   + W +++   + H   G A++ +E     +F  
Sbjct: 356 LMNMYSKSGSVEDARRVFLSMPCRDV-VSWNSIIIGYAHH---GRAREAMEAFHDMLFAE 411

Query: 424 DDSHGGDYVILSNLCARAGRW-EDVDYLRKLMKDRGV 459
           +      ++ + + CA+ G   E   YL  +MK+ GV
Sbjct: 412 EVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGV 448



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 134/264 (50%), Gaps = 6/264 (2%)

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
           L  GK +H   ++     ++     LI LY +C  +  AR++F+ +     VS N +++ 
Sbjct: 32  LSLGKAVHARVVRAA-RFDVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSG 90

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
           YA S R  +AL+L R     +    +  + SA+++ A + S D+G+  H Y  K GL ++
Sbjct: 91  YASSGRHRDALALLRVA---DFGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEH 147

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
             V +A++ M+ +C  +D+AV VFDN+S  +  A+++MI  +   GQ   S  +   M++
Sbjct: 148 PYVCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSMVR 207

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
                D ++++ +L  C+ T  V  G +  ++   K  +   +     +VD+ G+     
Sbjct: 208 NVGQWDHVSYVAVLGHCASTKEVVLG-SQVHTQALKRRLELNVYVGSALVDMYGKCDFPH 266

Query: 380 EAYRFIDELPIKSTPILWRTLLSS 403
           EA R  + LP K+  + W  ++++
Sbjct: 267 EANRVFEVLPEKNI-VSWTAIMTA 289


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 185/475 (38%), Positives = 293/475 (61%), Gaps = 7/475 (1%)

Query: 41  HAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRS 100
           H+  +K+ L  D +V   LI   T       +  A  +FD I E D+V +N+M  GYSR 
Sbjct: 149 HSGVLKSGLCADGHVRHSLI---TMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRM 205

Query: 101 KTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLY 160
                A+ LF E+ ++G  PD+ +  S+L AC  +G   L  G  +  F ++  ++ N +
Sbjct: 206 GYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGL--GSWIEGFVVENEMDLNSF 263

Query: 161 VCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN 220
           V + LI +Y +C D+ +ARR+F+ + +  VV++NA+IT YA++   +EA+ LF  ++E  
Sbjct: 264 VGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESG 323

Query: 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV 280
           + P  +T++  LS+CA +G+LD GKW+  Y  + GL   + V+TALIDM+AKCG LDDA+
Sbjct: 324 VNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDAL 383

Query: 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK--AQVSPDEITFLGLLYACSH 338
            VF++M  K+  +W+AMI A A HG+  +S+ +F+ M K    V P++I+F+G+L AC H
Sbjct: 384 RVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVH 443

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
            GLVDEG   F  M   +G+VP I+H+ CMVDLL RAG + EA+ FI+++P K   ++  
Sbjct: 444 AGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPDEVVLG 503

Query: 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458
            LL +C    N+ ++++V+  + E++  + G+Y+I S + A   RW+D   +R LM+ RG
Sbjct: 504 ALLGACQKRRNVDVSERVMHMLLEMEPLNSGNYIISSKIFANMKRWDDSARMRVLMRQRG 563

Query: 459 VLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLV 513
           V K PGCS IE+ N V EF +GD +H  S D+ + ++ L +E+K+ GY P    +
Sbjct: 564 VTKTPGCSWIEIENQVHEFHAGDVLHFISQDMCQVINLLNEEMKVEGYGPKVDFL 618



 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 128/390 (32%), Positives = 219/390 (56%), Gaps = 12/390 (3%)

Query: 19  TNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLL 78
           T T   LSLL +CTS + L+QIH   I   +     +L + I+    N       +A LL
Sbjct: 29  TLTDKLLSLLKQCTSTKSLQQIHTQMIINAIHKPNFLLHRFIDLKDFN-------NASLL 81

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIR-AIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           F +IP P+   FN M RG + +       I  + ++ + G+ P+++++P +  ACA +  
Sbjct: 82  FSQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANL-- 139

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
             L  G+  H   +K GL ++ +V  +LI +Y+ C ++  ARR+F+ ISE  +VS+N++I
Sbjct: 140 LVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMI 199

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
           + Y+R     +A+ LF E+++   +P ++T++S L +C  LG L LG WI  ++ +  +D
Sbjct: 200 SGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMD 259

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
               V +ALI M+ KCG L  A  VFD M  KD   W+AMI  YA +G   ++I++F  M
Sbjct: 260 LNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGM 319

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
            ++ V+PD+IT +G+L AC+  G +D G  +  +   + G+   I     ++D+  + G 
Sbjct: 320 RESGVNPDKITLVGVLSACASIGALDFG-KWLDTYASERGLQNDIYVSTALIDMYAKCGS 378

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
           LD+A R  +++P K+  + W  ++S+ + H
Sbjct: 379 LDDALRVFEDMPQKN-EVSWNAMISALAFH 407


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 199/548 (36%), Positives = 316/548 (57%), Gaps = 19/548 (3%)

Query: 21  TPNALSLL------PRCTSFRGLKQIHAVTIKTHLQNDLN--VLTKLINFCTQNPTTSSM 72
           +PN+L+ L       +C+  R  +  HA  IKT L N L   +   L+N  ++    +S 
Sbjct: 5   SPNSLASLVESAVSTQCS--RLGRAAHAQIIKT-LDNPLPSFIYNHLVNMYSKLDRPNS- 60

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
             A LL    P   +V +  +  G  ++     A+F F  +    + P+D++FP   KA 
Sbjct: 61  --AQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKAS 118

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
             + +  +  GKQ+H  A+K G  S+++V  +  ++Y++    E AR++F+ + E  + +
Sbjct: 119 GSLRSPLV--GKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIAT 176

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +NA ++      R ++AL+ F E ++  ++PTD  + S LS+CA L  L++GK +H    
Sbjct: 177 WNAYLSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAV 236

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           K  +   + V +AL+DM+ KCG ++DA   FD M  ++   W+AMI  YA  GQ   ++ 
Sbjct: 237 KACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVT 296

Query: 313 MFEEMM--KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370
           +F+EM     +V+P+ +TF+ +L ACS  G V+ G   F SMR +YGI PG +HY C+VD
Sbjct: 297 LFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVD 356

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430
           LLGRAG +++AY+FI ++PI+ T  +W  LL +        L K   + +FELD    G+
Sbjct: 357 LLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGN 416

Query: 431 YVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDL 490
           +V+LSN+ A AGRWE+   +RK MKD G+ K  GCS I   N V  F + D  H  ++++
Sbjct: 417 HVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEI 476

Query: 491 QKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIR 550
           Q  L +L  E++  GY+PDTS     D+E+EEK + + YHSEK+A+ FGL++ P G  IR
Sbjct: 477 QAMLAKLRGEMEAAGYIPDTSFALF-DLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIR 535

Query: 551 VVKNLRVC 558
           + KNLR+C
Sbjct: 536 ITKNLRIC 543


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 202/538 (37%), Positives = 312/538 (57%), Gaps = 11/538 (2%)

Query: 26  SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           +LL  C   R L+   ++HA  IKT       + T+L+ F  +      +E A  + D +
Sbjct: 57  ALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGK---CDCLEDARKVLDEM 113

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           PE ++V +  M   YS++     A+ +F E++ S   P++++F ++L +C  + A  L  
Sbjct: 114 PEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSC--IRASGLGL 171

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           GKQ+H   +K   +S+++V ++L+++YA+   ++ AR IFE + E  VVS  AII  YA+
Sbjct: 172 GKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQ 231

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
                EAL +F  L    + P  VT  S L++ + L  LD GK  H ++ +  L  Y  +
Sbjct: 232 LGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVL 291

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM-KAQ 321
             +LIDM++KCG L  A  +FDNM  +   +W+AM+V Y+ HG G + + +F  M  + +
Sbjct: 292 QNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKR 351

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSM-RDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
           V PD +T L +L  CSH  + D G N F  M   +YG  PG +HYGC+VD+LGRAGR+DE
Sbjct: 352 VKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDE 411

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           A+ FI  +P K T  +  +LL +C  H ++ + + V  R+ E++  + G+YVILSNL A 
Sbjct: 412 AFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYAS 471

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
           AGRW DV+ +R +M  + V K PG S I+    +  F + D  H    ++   + E+  +
Sbjct: 472 AGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIK 531

Query: 501 LKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +K  GYVPD S V + D+++E+KE  L  HSEKLA+TFGL+ T  G  IRV KNLR+C
Sbjct: 532 MKQAGYVPDLSCVLY-DVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRIC 588


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 196/522 (37%), Positives = 317/522 (60%), Gaps = 7/522 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +Q+H++  K     ++ V T L++   +    + M  A  +FD++PE ++V +N+M  G+
Sbjct: 265 QQLHSLIHKHGFDANIFVGTALVDMYAK---CADMHSAVRVFDQMPERNLVSWNSMIVGF 321

Query: 98  SRSKTPIRAIFLFVELLNSG-LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
             +    RA+ +F ++L    ++P++ S  S+L ACA +G   L  G+Q+H   +K GL 
Sbjct: 322 FHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGG--LNFGRQVHGVVVKYGLV 379

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
              YV  +L+++Y +C   +   ++F+ + +  VV++N ++  + ++ +  EA + F  +
Sbjct: 380 PLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVM 439

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           +   + P + +  + L S A L +L  G  IH+ I K G  K + +  +LI M+AKCG L
Sbjct: 440 RREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSL 499

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
            DA  VF+ +   +  +W+AMI AY  HG  ++ I +FE M+   + P  +TF+ +L AC
Sbjct: 500 VDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSAC 559

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           SHTG V+EG  +F SM+  + + PG +HY CMVDLLGRAG LDEA RFI+ +P+K TP +
Sbjct: 560 SHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSV 619

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
           W  LL +C  + NL + ++  ER+FE++  + G+YV+L+N+C R+GR E+ + +R+LM  
Sbjct: 620 WGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGV 679

Query: 457 RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHG 516
            GV K PGCS I+V N+   F + D  HS S ++ K L++L K +K  GYV +T  V + 
Sbjct: 680 NGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLEKLVKKKGYVAETEFVTN- 738

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +E+ E+E  L YHSEKLA+ FGLL  P  + IR+ KNLR C
Sbjct: 739 HLEENEEEQGLWYHSEKLALAFGLLTLPIDSPIRIKKNLRTC 780



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 132/255 (51%), Gaps = 4/255 (1%)

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE--PCVVS 192
           +   +L+   Q+H   I     S  ++   LINLYA+C  +  A  +F         +V+
Sbjct: 153 IQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHFKTIVT 212

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           + ++IT  +  +   +ALSLF +++     P   T  S LS+ A    +  G+ +H  I 
Sbjct: 213 WTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIH 272

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           K+G D  + V TAL+DM+AKC  +  AV VFD M  ++  +W++MIV +  +    +++ 
Sbjct: 273 KHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVG 332

Query: 313 MFEEMMKAQ-VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
           +F+++++ + V P+E++   +L AC++ G ++ G    + +  KYG+VP       ++D+
Sbjct: 333 VFKDVLREKTVIPNEVSVSSVLSACANMGGLNFG-RQVHGVVVKYGLVPLTYVMNSLMDM 391

Query: 372 LGRAGRLDEAYRFID 386
             +    DE  +   
Sbjct: 392 YFKCRFFDEGVKLFQ 406


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 191/538 (35%), Positives = 313/538 (58%), Gaps = 15/538 (2%)

Query: 27  LLPRCTSFRGL---KQIHAVTIKTHLQND---LNVLTKLINFCTQNPTTSSMEHAHLLFD 80
           LL  C   R L   K  H + I   L  D    N+L  L   C QN        A  +FD
Sbjct: 62  LLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDC------ARRVFD 115

Query: 81  RIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEAL 140
            +    I+ +NTM  GY+ ++  + A+ LF  +   G    +++  S L  CAC    A+
Sbjct: 116 AMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTL--CACAAKYAI 173

Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY 200
            E KQLH  AIKL L+S+ +V T  +++YA+C+ ++ A  +FEN+ E   V+++++   +
Sbjct: 174 IECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGF 233

Query: 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
            ++    E L LF+  Q   ++ T+ T+ S LS+CA L  +  G  +H  I K+G  + +
Sbjct: 234 VQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNL 293

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            V T+L+D++AKCG+++ +  VF +M  K+   W+AMI +++ H    +++++FE+M + 
Sbjct: 294 FVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQV 353

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
            + P+E+T+L +L ACSHTGLV+EG +YF  +       P + HY CMVD+LGR+G+ DE
Sbjct: 354 GIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDE 413

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           A++ +D++P + T  +W +LL S   H N+ LA+   E++F L+  +GG++V+LSN+ A 
Sbjct: 414 AWKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLLSNVYAA 473

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
           +G WE+V   RK ++D G  K  G S IE    +  F +G+  H   TD+   L+E+  E
Sbjct: 474 SGNWENVVVARKYLRDSGAKKEMGRSWIEAKGKIHVFVAGEREHPGITDVYNKLEEIYHE 533

Query: 501 LKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           ++ + +  +T    H D+  ++KE  L++HSEKLA  FGL++ PP   I + KNLR+C
Sbjct: 534 MRKISHRANTQCDLH-DVHADQKEELLKHHSEKLAFAFGLISLPPNIPITIYKNLRIC 590



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 5/186 (2%)

Query: 218 ERNLKPTDV-TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           ER+L   DV T+   L  CA   SL +GK  H     +GL         LI+++ KCG+ 
Sbjct: 50  ERDL--IDVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQN 107

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           D A  VFD MS +   +W+ MI  Y  + +  +++ +F  M +      E T    L AC
Sbjct: 108 DCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCAC 167

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           +    + E     +++  K  +          +D+  +   + +A    + +P K T + 
Sbjct: 168 AAKYAIIEC-KQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEK-TSVT 225

Query: 397 WRTLLS 402
           W +L +
Sbjct: 226 WSSLFA 231


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 199/537 (37%), Positives = 309/537 (57%), Gaps = 9/537 (1%)

Query: 25  LSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           +++L  C S   L   KQIHA  +++   +D+ V T L     +     + + A  +F+ 
Sbjct: 234 MNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMK---CGAFKDAREVFEC 290

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +   D++ +NTM RG+  S     A   F  +L  G+ PD  ++ ++L ACA  G   L 
Sbjct: 291 LSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGG--LA 348

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            GK++H  A K GL S++     LIN+Y++   ++ AR++F+ + +  VVS+  ++  YA
Sbjct: 349 RGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYA 408

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
              +  E+ + F+++ ++ +K   +T +  L +C+   +L  GK IH  + K GL   + 
Sbjct: 409 DCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLA 468

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V  AL+ M+ KCG ++DA+ VF+ MS +D   W+ +I     +G+G +++  +E M    
Sbjct: 469 VTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEG 528

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           + P+  TF+ +L AC    LV+EG   F  M   YGIVP  KHY CMVD+L RAG L EA
Sbjct: 529 MRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREA 588

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
              I  +P+K +  +W  LL++C  H N+ + ++  E   +L+  + G YV LS + A A
Sbjct: 589 EDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAA 648

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           G W DV  LRK MK+RGV K PG S IE+   V  F + D  H  + ++   L+ L K++
Sbjct: 649 GMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELETLKKQM 708

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K +GYVPDT  V H D++DE KE A+ +HSEKLAI +GL++TPPGT IR+ KNLRVC
Sbjct: 709 KSLGYVPDTRFVMH-DLDDEGKERAVCHHSEKLAIAYGLISTPPGTPIRISKNLRVC 764



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 114/383 (29%), Positives = 196/383 (51%), Gaps = 16/383 (4%)

Query: 25  LSLLPRCTSFRGL---KQIHAVTIKTHLQNDL---NVLTKLINFCTQNPTTSSMEHAHLL 78
           + LL  C   + L   KQ+H   ++  ++ ++   N L KL   C       S+  A  L
Sbjct: 32  VKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHC------GSVNEARQL 85

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
           FD+     +V +N M  GY+       A  LF  +    L PD ++F S+L AC+     
Sbjct: 86  FDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACS--SPA 143

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
            L  G+++H   ++ GL ++  V   LI++YA+C  V  ARR+F+ ++    VS+  +  
Sbjct: 144 VLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTG 203

Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
           AYA S    E+L  +  + +  ++P+ +T ++ LS+C  L +L+ GK IH +I +     
Sbjct: 204 AYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHS 263

Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
            V+V+TAL  M+ KCG   DA  VF+ +S +D  AW+ MI  +   GQ  ++   F  M+
Sbjct: 264 DVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRML 323

Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
           +  V+PD  T+  +L AC+  G +  G    ++   K G+V  ++    ++++  +AG +
Sbjct: 324 EEGVAPDRATYTTVLSACARPGGLARG-KEIHARAAKDGLVSDVRFGNALINMYSKAGSM 382

Query: 379 DEAYRFIDELPIKSTPILWRTLL 401
            +A +  D +P K   + W TLL
Sbjct: 383 KDARQVFDRMP-KRDVVSWTTLL 404



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 166/332 (50%), Gaps = 7/332 (2%)

Query: 113 LLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172
           L   G   D Y +  LL++C  V A+ L  GKQ+H   ++ G+  N+Y+  TL+ LYA C
Sbjct: 19  LHRKGPQVDSYDYVKLLQSC--VKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHC 76

Query: 173 SDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232
             V  AR++F+  S   VVS+N +I+ YA      EA +LF  +Q+  L+P   T +S L
Sbjct: 77  GSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSIL 136

Query: 233 SSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ 292
           S+C+    L+ G+ IH  + + GL     V  ALI M+AKCG + DA  VFD M+ +D  
Sbjct: 137 SACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEV 196

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYS 351
           +W+ +  AYA  G G +S+  +  M++ +V P  IT++ +L AC     +++G   + + 
Sbjct: 197 SWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHI 256

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
           +  +Y     ++    +  +  + G   +A    + L  +   I W T++        L 
Sbjct: 257 VESEYH--SDVRVSTALTKMYMKCGAFKDAREVFECLSYRDV-IAWNTMIRGFVDSGQLE 313

Query: 412 LAKQVIERIFELDDS-HGGDYVILSNLCARAG 442
            A     R+ E   +     Y  + + CAR G
Sbjct: 314 EAHGTFHRMLEEGVAPDRATYTTVLSACARPG 345


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 196/523 (37%), Positives = 305/523 (58%), Gaps = 10/523 (1%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           +H   +K  L  +L V   LI+   +      +E A  +F  +   D+V +N++  G  +
Sbjct: 191 MHVYAVKHGLDKELFVCNALIDVYGK---LGMLEEAQCVFHGMECRDLVTWNSIISGCEQ 247

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN-SN 158
                 A+ +F  +  SG+ PD  +  SL  A A  G       K LHC+ ++ G +  +
Sbjct: 248 RGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDG--RSAKSLHCYVMRRGWDVDD 305

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
           +     ++++YA+ S++EAA+R+F+++     VS+N +IT Y ++   NEA+  +  +Q+
Sbjct: 306 IIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQK 365

Query: 219 -RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              LK    T +S L + + LG+L  G  +H    K GL+  V V T LID++AKCG+L 
Sbjct: 366 HEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLA 425

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           +A+ +F+ M  + T  W+A+I     HG G +++ +F  M +  + PD +TF+ LL ACS
Sbjct: 426 EAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACS 485

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H GLVD+G ++F  M+  Y IVP  KHY CM D+LGRAG+LDEA+ FI  +PIK    +W
Sbjct: 486 HAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVW 545

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             LL +C  H N+ + K   + +FELD  + G YV++SN+ A+ G+W+ VD +R L++ +
Sbjct: 546 GALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQ 605

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGV--HSYSTDLQKALDELVKELKMVGYVPDTSLVHH 515
            + K PG SSIEV   V  F+SG+    H    ++Q  L  L+ +++ VGYV D S V  
Sbjct: 606 NLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEEIQAELRSLLAKIRSVGYVSDYSFVLQ 665

Query: 516 GDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            D+ED+EKE  L  HSE+LAI FG++NTP  T + + KNLRVC
Sbjct: 666 -DVEDDEKEHILNNHSERLAIAFGIINTPSRTPLHIYKNLRVC 707



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 187/365 (51%), Gaps = 16/365 (4%)

Query: 68  TTSSMEHAHL----------LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSG 117
           T+ S+ HA+L          +FD + E D+  +N M  G  R+     A+ LF  ++  G
Sbjct: 105 TSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEG 164

Query: 118 LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEA 177
           +  D  +  S+L  C  +G + L     +H +A+K GL+  L+VC  LI++Y +   +E 
Sbjct: 165 VAGDTVTVSSVLPMCVLLGDQVL--ALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEE 222

Query: 178 ARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL 237
           A+ +F  +    +V++N+II+   +  +   AL +F+ ++   + P  +T++S  S+ A 
Sbjct: 223 AQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQ 282

Query: 238 LGSLDLGKWIHEYIKKYGLD-KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSA 296
            G     K +H Y+ + G D   +    A++DM+AK   ++ A  +FD+M  +D+ +W+ 
Sbjct: 283 GGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNT 342

Query: 297 MIVAYATHGQGHKSILMFEEMMKAQ-VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355
           +I  Y  +G  ++++  +  M K + +   + TF+ +L A SH G + +G    +++  K
Sbjct: 343 LITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMR-MHALSIK 401

Query: 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQ 415
            G+   +    C++DL  + G+L EA    +++P +ST   W  ++S    H +   A  
Sbjct: 402 IGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGP-WNAIISGLGVHGHGAEALT 460

Query: 416 VIERI 420
           +  R+
Sbjct: 461 LFSRM 465



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 173/342 (50%), Gaps = 14/342 (4%)

Query: 91  NTMARGYSRSKTPIRAIFLFVELLNSG--LLPDDYSFPSLLKACACVGAEALEEGKQLHC 148
           NT+   +SR+  P  A  L   +L+      PD ++FPSL++A     A +     QLH 
Sbjct: 37  NTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRA-----APSNASAAQLHA 91

Query: 149 FAIKLGL-NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPN 207
            A++LGL   +++   +L++ Y     +  A ++F+ +SE  V ++NA+++   R++R  
Sbjct: 92  CALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAA 151

Query: 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267
           EA+ LF  +    +    VT+ S L  C LLG   L   +H Y  K+GLDK + V  ALI
Sbjct: 152 EAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALI 211

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
           D++ K G L++A  VF  M  +D   W+++I      GQ   ++ MF+ M  + VSPD +
Sbjct: 212 DVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVL 271

Query: 328 TFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
           T + L  A +  G      + + Y MR  +  V  I     +VD+  +   ++ A R  D
Sbjct: 272 TLVSLASAIAQGGDGRSAKSLHCYVMRRGWD-VDDIIAGNAIVDMYAKLSNIEAAQRMFD 330

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428
            +P++ + + W TL++    +   GLA + +ER   +    G
Sbjct: 331 SMPVQDS-VSWNTLITGYMQN---GLANEAVERYGHMQKHEG 368


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 195/523 (37%), Positives = 309/523 (59%), Gaps = 11/523 (2%)

Query: 39   QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
            Q+H   IK  + ND  V T LI+  ++      M+ A  L     + D+  +N +  GY 
Sbjct: 1019 QVHVYAIKCGIINDSFVSTALIDLYSKG---GKMDEAEFLLHGKYDFDLASWNAIMFGYI 1075

Query: 99   RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
            +S    +A+  F  +   G+  D+ +  + +KA  C+    L++GKQ+  +AIKLG N++
Sbjct: 1076 KSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCL--INLKQGKQIQAYAIKLGFNND 1133

Query: 159  LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
            L+V + ++++Y +C D+  A  +F  IS P  V++  +I+ Y  +   + ALS++  ++ 
Sbjct: 1134 LWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRV 1193

Query: 219  RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK--YGLDKYVKVNTALIDMHAKCGRL 276
              ++P + T  + + + + L +L+ GK IH  + K  Y LD +V   T+L+DM+ KCG +
Sbjct: 1194 SGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFV--GTSLVDMYCKCGSV 1251

Query: 277  DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
             DA  VF  M  +    W+AM++  A HG   +++ +F  M    + PD++TF+G+L AC
Sbjct: 1252 QDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSAC 1311

Query: 337  SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
            SH+GL  E + YF +M   YGI P I+HY C+VD LGRAGR+ EA   I  +P K++  +
Sbjct: 1312 SHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASM 1371

Query: 397  WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
            +R LL +C +  +   AK+V +++  LD S    YV+LSN+ A + +W+DV   R +MK 
Sbjct: 1372 YRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKL 1431

Query: 457  RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVG-YVPDTSLVHH 515
            + V K PG S I+V N V  F   D  H  ++ + + +++L+K ++  G YVPDT     
Sbjct: 1432 KNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLL 1491

Query: 516  GDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             D+E+EEKE AL YHSEKLAI FGL++TPP  TIRV+KNLRVC
Sbjct: 1492 -DVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVC 1533



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 195/376 (51%), Gaps = 10/376 (2%)

Query: 38   KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
            +QIHA+ IK+     + V   L+N  ++     + E     F   PE D++ +NTM   Y
Sbjct: 914  EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKT---FINSPELDLISWNTMISSY 970

Query: 98   SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG-AEALEEGKQLHCFAIKLGLN 156
            +++   + AI  F +LL  GL PD ++  S+L+AC+     E    G Q+H +AIK G+ 
Sbjct: 971  AQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGII 1030

Query: 157  SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            ++ +V T LI+LY++   ++ A  +     +  + S+NAI+  Y +S++  +AL  F  +
Sbjct: 1031 NDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLM 1090

Query: 217  QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
             E  +   ++T+ +A+ +   L +L  GK I  Y  K G +  + V++ ++DM+ KCG +
Sbjct: 1091 HEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDM 1150

Query: 277  DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
             +A+ +F  +S  D  AW+ MI  Y  +G    ++ ++  M  + V PDE TF  L+ A 
Sbjct: 1151 PNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKAS 1210

Query: 337  SHTGLVDEGWNYFYSMRDKYGIVPGIKHY--GCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
            S    +++G     ++     +   + H+    +VD+  + G + +AYR   ++ ++   
Sbjct: 1211 SCLTALEQGKQIHANV---VKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKV- 1266

Query: 395  ILWRTLLSSCSSHNNL 410
            + W  +L   + H ++
Sbjct: 1267 VFWNAMLLGLAQHGHV 1282



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 156/350 (44%), Gaps = 44/350 (12%)

Query: 40   IHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
            +H   +K   + DL V   L+N +C        +  A LLFD++PE D VL+N M + Y 
Sbjct: 739  VHGYAVKIGFELDLFVSGALVNIYCKYGL----VGQARLLFDKMPERDAVLWNVMLKAYV 794

Query: 99   RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
             +     A+  F     SG  PD                        LHC  +  G+NS+
Sbjct: 795  ENSFQDEALRFFSAFHRSGFFPD---------------------FSNLHC--VIGGVNSD 831

Query: 159  LYVCTTLINLYAECSDVEA-ARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            +       N       V+A A ++F       + ++N  +T +  + +   A+  F+ L 
Sbjct: 832  VSN-----NRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLL 886

Query: 218  ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
               +    VT++  LS+      LDLG+ IH  + K      V V+ +L++M++K G + 
Sbjct: 887  RSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVY 946

Query: 278  DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
             A   F N    D  +W+ MI +YA +    ++I  F ++++  + PD+ T   +L ACS
Sbjct: 947  AAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS 1006

Query: 338  HTGLVDEGWNYFY--SMRDKYGIVPGIKHYG----CMVDLLGRAGRLDEA 381
             TG  DEG  YF   S    Y I  GI +       ++DL  + G++DEA
Sbjct: 1007 -TG--DEG-EYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 102/198 (51%), Gaps = 5/198 (2%)

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
           + +    L+ GK+ H   +  G   + Y+   LI +Y++C  + +AR++F+  S+  +V+
Sbjct: 620 SAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVT 679

Query: 193 YNAIITAYAR---SSRPN--EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
           +N+I+ AYA+   SS  N  E   LF  L+E     T +T+   L  C L G + + + +
Sbjct: 680 WNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETV 739

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQG 307
           H Y  K G +  + V+ AL++++ K G +  A  +FD M  +D   W+ M+ AY  +   
Sbjct: 740 HGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQ 799

Query: 308 HKSILMFEEMMKAQVSPD 325
            +++  F    ++   PD
Sbjct: 800 DEALRFFSAFHRSGFFPD 817



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 148/356 (41%), Gaps = 40/356 (11%)

Query: 61  NFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY-----SRSKTPIRAIFLFVELLN 115
           N  T      S+  A  +FD+  + D+V +N++   Y     S  +  +    LF  L  
Sbjct: 651 NLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLRE 710

Query: 116 SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDV 175
            G      +   LLK C   G   + E   +H +A+K+G   +L+V   L+N+Y +   V
Sbjct: 711 FGFSITRLTLAPLLKLCLLSGFVQVSE--TVHGYAVKIGFELDLFVSGALVNIYCKYGLV 768

Query: 176 EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSC 235
             AR +F+ + E   V +N ++ AY  +S  +EAL  F         P D + L  +   
Sbjct: 769 GQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFP-DFSNLHCVIGG 827

Query: 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWS 295
                 +  K   E +K Y                        A+ +F    G +  AW+
Sbjct: 828 VNSDVSNNRKRHAEQVKAY------------------------AMKMFPFDQGSNIFAWN 863

Query: 296 AMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355
             +  +   GQ   +I  F+ ++++ +  D +T + +L A      +D G    +++  K
Sbjct: 864 KKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLG-EQIHALVIK 922

Query: 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYR-FID--ELPIKSTPILWRTLLSSCSSHN 408
               P +     ++++  +AG +  A + FI+  EL +    I W T++SS + +N
Sbjct: 923 SSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDL----ISWNTMISSYAQNN 974


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 195/523 (37%), Positives = 309/523 (59%), Gaps = 11/523 (2%)

Query: 39   QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
            Q+H   IK  + ND  V T LI+  ++      M+ A  L     + D+  +N +  GY 
Sbjct: 1019 QVHVYAIKCGIINDSFVSTALIDLYSKG---GKMDEAEFLLHGKYDFDLASWNAIMFGYI 1075

Query: 99   RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
            +S    +A+  F  +   G+  D+ +  + +KA  C+    L++GKQ+  +AIKLG N++
Sbjct: 1076 KSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCL--INLKQGKQIQAYAIKLGFNND 1133

Query: 159  LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
            L+V + ++++Y +C D+  A  +F  IS P  V++  +I+ Y  +   + ALS++  ++ 
Sbjct: 1134 LWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRV 1193

Query: 219  RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK--YGLDKYVKVNTALIDMHAKCGRL 276
              ++P + T  + + + + L +L+ GK IH  + K  Y LD +V   T+L+DM+ KCG +
Sbjct: 1194 SGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFV--GTSLVDMYCKCGSV 1251

Query: 277  DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
             DA  VF  M  +    W+AM++  A HG   +++ +F  M    + PD++TF+G+L AC
Sbjct: 1252 QDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSAC 1311

Query: 337  SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
            SH+GL  E + YF +M   YGI P I+HY C+VD LGRAGR+ EA   I  +P K++  +
Sbjct: 1312 SHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASM 1371

Query: 397  WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
            +R LL +C +  +   AK+V +++  LD S    YV+LSN+ A + +W+DV   R +MK 
Sbjct: 1372 YRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKL 1431

Query: 457  RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVG-YVPDTSLVHH 515
            + V K PG S I+V N V  F   D  H  ++ + + +++L+K ++  G YVPDT     
Sbjct: 1432 KNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLL 1491

Query: 516  GDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             D+E+EEKE AL YHSEKLAI FGL++TPP  TIRV+KNLRVC
Sbjct: 1492 -DVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVC 1533



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 195/376 (51%), Gaps = 10/376 (2%)

Query: 38   KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
            +QIHA+ IK+     + V   L+N  ++     + E     F   PE D++ +NTM   Y
Sbjct: 914  EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKT---FINSPELDLISWNTMISSY 970

Query: 98   SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG-AEALEEGKQLHCFAIKLGLN 156
            +++   + AI  F +LL  GL PD ++  S+L+AC+     E    G Q+H +AIK G+ 
Sbjct: 971  AQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGII 1030

Query: 157  SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            ++ +V T LI+LY++   ++ A  +     +  + S+NAI+  Y +S++  +AL  F  +
Sbjct: 1031 NDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLM 1090

Query: 217  QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
             E  +   ++T+ +A+ +   L +L  GK I  Y  K G +  + V++ ++DM+ KCG +
Sbjct: 1091 HEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDM 1150

Query: 277  DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
             +A+ +F  +S  D  AW+ MI  Y  +G    ++ ++  M  + V PDE TF  L+ A 
Sbjct: 1151 PNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKAS 1210

Query: 337  SHTGLVDEGWNYFYSMRDKYGIVPGIKHY--GCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
            S    +++G     ++     +   + H+    +VD+  + G + +AYR   ++ ++   
Sbjct: 1211 SCLTALEQGKQIHANV---VKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKV- 1266

Query: 395  ILWRTLLSSCSSHNNL 410
            + W  +L   + H ++
Sbjct: 1267 VFWNAMLLGLAQHGHV 1282



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 156/350 (44%), Gaps = 44/350 (12%)

Query: 40   IHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
            +H   +K   + DL V   L+N +C        +  A LLFD++PE D VL+N M + Y 
Sbjct: 739  VHGYAVKIGFELDLFVSGALVNIYCKYGL----VGQARLLFDKMPERDAVLWNVMLKAYV 794

Query: 99   RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
             +     A+  F     SG  PD                        LHC  +  G+NS+
Sbjct: 795  ENSFQDEALRFFSAFHRSGFXPD---------------------FSNLHC--VIGGVNSD 831

Query: 159  LYVCTTLINLYAECSDVEA-ARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            +       N       V+A A ++F       + ++N  +T +  + +   A+  F+ L 
Sbjct: 832  VSN-----NRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLL 886

Query: 218  ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
               +    VT++  LS+      LDLG+ IH  + K      V V+ +L++M++K G + 
Sbjct: 887  RSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVY 946

Query: 278  DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
             A   F N    D  +W+ MI +YA +    ++I  F ++++  + PD+ T   +L ACS
Sbjct: 947  AAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS 1006

Query: 338  HTGLVDEGWNYFY--SMRDKYGIVPGIKHYG----CMVDLLGRAGRLDEA 381
             TG  DEG  YF   S    Y I  GI +       ++DL  + G++DEA
Sbjct: 1007 -TG--DEG-EYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 102/198 (51%), Gaps = 5/198 (2%)

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
           + +    L+ GK+ H   +  G   + Y+   LI +Y++C  + +AR++F+  S+  +V+
Sbjct: 620 SAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVT 679

Query: 193 YNAIITAYAR---SSRPN--EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
           +N+I+ AYA+   SS  N  E   LF  L+E     T +T+   L  C L G + + + +
Sbjct: 680 WNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETV 739

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQG 307
           H Y  K G +  + V+ AL++++ K G +  A  +FD M  +D   W+ M+ AY  +   
Sbjct: 740 HGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQ 799

Query: 308 HKSILMFEEMMKAQVSPD 325
            +++  F    ++   PD
Sbjct: 800 DEALRFFSAFHRSGFXPD 817



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 148/356 (41%), Gaps = 40/356 (11%)

Query: 61  NFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY-----SRSKTPIRAIFLFVELLN 115
           N  T      S+  A  +FD+  + D+V +N++   Y     S  +  +    LF  L  
Sbjct: 651 NLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLRE 710

Query: 116 SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDV 175
            G      +   LLK C   G   + E   +H +A+K+G   +L+V   L+N+Y +   V
Sbjct: 711 FGFSITRLTLAPLLKLCLLSGFVQVSE--TVHGYAVKIGFELDLFVSGALVNIYCKYGLV 768

Query: 176 EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSC 235
             AR +F+ + E   V +N ++ AY  +S  +EAL  F         P D + L  +   
Sbjct: 769 GQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXP-DFSNLHCVIGG 827

Query: 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWS 295
                 +  K   E +K Y                        A+ +F    G +  AW+
Sbjct: 828 VNSDVSNNRKRHAEQVKAY------------------------AMKMFPFDQGSNIFAWN 863

Query: 296 AMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355
             +  +   GQ   +I  F+ ++++ +  D +T + +L A      +D G    +++  K
Sbjct: 864 KKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLG-EQIHALVIK 922

Query: 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYR-FID--ELPIKSTPILWRTLLSSCSSHN 408
               P +     ++++  +AG +  A + FI+  EL +    I W T++SS + +N
Sbjct: 923 SSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDL----ISWNTMISSYAQNN 974


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 200/572 (34%), Positives = 319/572 (55%), Gaps = 44/572 (7%)

Query: 25  LSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           LS+   C S R +   K++H   I+    +D+ +   LI+   +   +   E A L+F+ 
Sbjct: 82  LSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCS---EGARLVFEG 138

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +P  D++ + +MA  Y        A+  F ++  +G  P+  +  S+L AC  +  + L+
Sbjct: 139 MPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDL--KDLK 196

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY- 200
            G+++H F ++ G+  N++V + L+N+YA C  +  A+ +F+++S    VS+N +ITAY 
Sbjct: 197 SGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYF 256

Query: 201 ----------------------------------ARSSRPNEALSLFRELQERNLKPTDV 226
                                              ++ R  +AL +   +Q    KP  +
Sbjct: 257 LNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQI 316

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
           T+ S L +C  L SL  GK IH YI ++   + +   TAL+ M+AKCG L+ +  VF  M
Sbjct: 317 TITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMM 376

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
           + +DT +W+ MI+A + HG G +++L+F EM+ + V P+ +TF G+L  CSH+ LVDEG 
Sbjct: 377 TKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGL 436

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
             F SM   + + P   H+ CMVD+L RAGRL+EAY FI ++PI+ T   W  LL  C  
Sbjct: 437 LIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRV 496

Query: 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCS 466
           + N+ L +    R+FE++  + G+YV+LSN+   A  W +    RKLM+DRGV K PGCS
Sbjct: 497 YKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCS 556

Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
            I+V N V  F  GD  +  S ++ + LD + +++++ GY+P+T  V   D++ EEKE  
Sbjct: 557 WIQVRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQ-DVDQEEKEEV 615

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           L  HSEKLA+ FG+LN    ++IRV KNLR+C
Sbjct: 616 LCNHSEKLAVAFGVLNLNGESSIRVFKNLRIC 647



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 149/296 (50%), Gaps = 3/296 (1%)

Query: 60  INFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLL 119
           + F      +  ++ A  LFD+IP+PD+  +  +    ++    + AI  + +  +   +
Sbjct: 15  LKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCV 74

Query: 120 -PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAA 178
            PD     S+ KACA +    +   K++H  AI+ G  S++ +   LI++Y +C   E A
Sbjct: 75  EPDKLLLLSVAKACASL--RDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGA 132

Query: 179 RRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL 238
           R +FE +    V+S+ ++ + Y       EAL  FR++     +P  VT+ S L +C  L
Sbjct: 133 RLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDL 192

Query: 239 GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMI 298
             L  G+ +H ++ + G+   V V++AL++M+A C  +  A  VFD+MS +DT +W+ +I
Sbjct: 193 KDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLI 252

Query: 299 VAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD 354
            AY  + +  K + +F  MM   V  +  ++  ++  C   G  ++       M++
Sbjct: 253 TAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQN 308



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 147/319 (46%), Gaps = 45/319 (14%)

Query: 20  NTPNALSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N+    S+LP CT  + LK   ++H   ++  +  ++ V + L+N      +  S+  A 
Sbjct: 178 NSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNM---YASCLSIRQAQ 234

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL---------------------- 114
           L+FD +   D V +N +   Y  +K   + + +F  ++                      
Sbjct: 235 LVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNG 294

Query: 115 -------------NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYV 161
                        NSG  P+  +  S+L AC     E+L  GKQ+H +  +     +L  
Sbjct: 295 RTEKALEVLSRMQNSGFKPNQITITSVLPACT--NLESLRGGKQIHGYIFRHWFFQDLTT 352

Query: 162 CTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNL 221
            T L+ +YA+C D+E +RR+F  +++   VS+N +I A +      EAL LFRE+ +  +
Sbjct: 353 TTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGV 412

Query: 222 KPTDVTMLSALSSCALLGSLDLGKWIHEYIKK-YGLDKYVKVNTALIDMHAKCGRLDDAV 280
           +P  VT    LS C+    +D G  I + + + + ++     ++ ++D+ ++ GRL++A 
Sbjct: 413 RPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAY 472

Query: 281 SVFDNMSGKDTQ-AWSAMI 298
                M  + T  AW A++
Sbjct: 473 EFIKKMPIEPTAGAWGALL 491


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 183/487 (37%), Positives = 291/487 (59%), Gaps = 3/487 (0%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +E A  LF+ + + D + + TM  G++++     A+ +F  +   G+  D Y+F S+L A
Sbjct: 222 VEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTA 281

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C  +   ALE+GKQ+H + I+   + N++V + L+++Y++C  ++ A  +F  ++   ++
Sbjct: 282 CGAL--SALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNII 339

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+ A+I  Y ++    EA+ +F E+Q   + P D T+ S +SSCA L SL+ G   H   
Sbjct: 340 SWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLA 399

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
              GL  Y+ V+ AL+ ++ KCG ++DA  +FD MS  D  +W+A++  YA  G+  ++I
Sbjct: 400 LVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETI 459

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +FE+M+   V PD +TF+G+L ACS  G V++G +YF+SM+  +GIVP   HY CM+DL
Sbjct: 460 DLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDL 519

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
             R+G+L EA  FI ++P+    I W TLLS+C    ++ + K   E + E+D  +   Y
Sbjct: 520 YSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPASY 579

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           V+L ++ A  G+W +V  LR+ M+DR V K PGCS I+  N V  F + D  H  S  + 
Sbjct: 580 VLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPCSKGIY 639

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
           + L+ L  ++   GY PD S V H D+ D +K   + +HSEKLAI FGL+  P    IR+
Sbjct: 640 EKLEWLNSKMLEEGYKPDVSSVLH-DVADTDKVHMVSHHSEKLAIAFGLIFVPQEMPIRI 698

Query: 552 VKNLRVC 558
           VKNLRVC
Sbjct: 699 VKNLRVC 705



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 129/492 (26%), Positives = 245/492 (49%), Gaps = 73/492 (14%)

Query: 61  NFCTQNPTTSSMEHAHLL------FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL 114
           N  T N   S++ HA LL      F  + + DIV +N +  G+S   +  +A+ +++ LL
Sbjct: 71  NLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALL 130

Query: 115 --NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE- 171
             +S + P   +  +++ A + +G  AL  GKQ HC  ++LG  +N +V + L+++YA+ 
Sbjct: 131 QADSSVRPSRITMSTMVMAASALGDRAL--GKQFHCQILRLGFGANAFVGSPLVDMYAKM 188

Query: 172 ------------------------------CSDVEAARRIFENISEPCVVSYNAIITAYA 201
                                         C  VE ARR+FE +++   +++  ++T + 
Sbjct: 189 SLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFT 248

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++   +EAL +FR ++ + +     T  S L++C  L +L+ GK IH YI +   D  V 
Sbjct: 249 QNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVF 308

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V +AL+DM++KC  +  A +VF  M+ K+  +W+A+IV Y  +G   +++ +F EM +  
Sbjct: 309 VGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDG 368

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY----GCMVDLLGRAGR 377
           + PD+ T   ++ +C++   ++EG  +         +V G+ HY      +V L G+ G 
Sbjct: 369 IDPDDYTLGSVISSCANLASLEEGAQFHC-----LALVSGLMHYITVSNALVTLYGKCGS 423

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD-----YV 432
           +++A+R  DE+      + W  L+   S +   G AK+ I+ +FE   + G       ++
Sbjct: 424 IEDAHRLFDEMSFHDQ-VSWTALV---SGYAQFGRAKETID-LFEKMLAKGVKPDGVTFI 478

Query: 433 ILSNLCARAGRWED-VDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
            + + C+RAG  E    Y   + KD G++ +    +  ++           ++S S  L+
Sbjct: 479 GVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMID-----------LYSRSGKLK 527

Query: 492 KALDELVKELKM 503
           +A +E +K++ M
Sbjct: 528 EA-EEFIKQMPM 538



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 149/280 (53%), Gaps = 10/280 (3%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  C +   L   KQIHA  I+T   +++ V + L++  ++     S++ A  +F R+
Sbjct: 277 SILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSK---CRSIKLAETVFRRM 333

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
              +I+ +  +  GY ++     A+ +F E+   G+ PDDY+  S++ +CA +   +LEE
Sbjct: 334 TCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLA--SLEE 391

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G Q HC A+  GL   + V   L+ LY +C  +E A R+F+ +S    VS+ A+++ YA+
Sbjct: 392 GAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQ 451

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK-WIHEYIKKYGLDKYVK 261
             R  E + LF ++  + +KP  VT +  LS+C+  G ++ G+ + H   K +G+     
Sbjct: 452 FGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDD 511

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVA 300
             T +ID++++ G+L +A      M    D   W  ++ A
Sbjct: 512 HYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSA 551


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 196/492 (39%), Positives = 293/492 (59%), Gaps = 13/492 (2%)

Query: 27  LLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           L   C + RGL   K  H +  K  L  D  V   LI   T       M  A  +FD + 
Sbjct: 134 LFIACGNVRGLVHGKIGHCLVFKAGLDGDEYVNHSLI---TMYARCGEMGFARKVFDEMG 190

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
           + D+V +N+M  GYS+      AI LF+E+   G  PD+ +  S+L AC  +G   L  G
Sbjct: 191 DRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGL--G 248

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
           + +  F ++  +  N Y+ + LI++Y +C D+ +ARR+F+++    VV++NAIIT YA++
Sbjct: 249 RWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQN 308

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
              NEA+ LF  ++E    P  VTM+  LS+C+ +G+LDLGKW+  +  + GL   V V 
Sbjct: 309 GASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVYVA 368

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK--AQ 321
           +ALIDM+AKCG LDDAV VF++M  K+  +W+AMI A A HGQ  +++ +F  M K    
Sbjct: 369 SALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMSKDNGT 428

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           V P++ITF+G+L AC H GLVDEG   F SM   +G+VP ++HY CMVDL  RAG L EA
Sbjct: 429 VQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSFGLVPKVEHYSCMVDLCARAGLLYEA 488

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
           +  I ++P K   I+  +LL +C    N  + ++VI+   E++ S+ G+YVI S + A  
Sbjct: 489 WDLIKKMPGKPDEIVLGSLLGACQRRRNADVGERVIQLFLEMELSNSGNYVISSKIYANM 548

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
            RW+D   +R LM+  GV K PGCS I++   V EF +GD +H++S ++ + L+E   E+
Sbjct: 549 RRWDDSAKMRVLMRQCGVSKTPGCSWIDIGAHVHEFHAGDSLHNHSMNIYQLLNE---EM 605

Query: 502 KMVGYVPDTSLV 513
           K  GY+P+   +
Sbjct: 606 KREGYIPNIGCI 617



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 126/403 (31%), Positives = 224/403 (55%), Gaps = 12/403 (2%)

Query: 19  TNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLL 78
           T T   LSL+ +C S   LKQIHA  +   +     +L+K+I+          + +A L+
Sbjct: 31  TLTEKLLSLIKQCKSKNLLKQIHAQMLINSIPKPNFLLSKIIDL-------KDLAYASLV 83

Query: 79  FDRIPEPDIVLFNTMARGYSRS-KTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           F+++ +P+I  FN M RG + + K     + L+ +L + GL  +++++P L  AC  V  
Sbjct: 84  FNQLTKPNIYAFNVMLRGLATTWKKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNV-- 141

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
             L  GK  HC   K GL+ + YV  +LI +YA C ++  AR++F+ + +  +VS+N++I
Sbjct: 142 RGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMI 201

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
           + Y++     EA+ LF E++E   +P ++T++S L +C  LG L LG+W+  ++ +  ++
Sbjct: 202 SGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKME 261

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
               + +ALIDM+ KCG L  A  VFD+M  KD   W+A+I  YA +G  +++I++F  M
Sbjct: 262 VNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGM 321

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
            +A   PD +T + +L ACS  G +D G  +  +   + G+   +     ++D+  + G 
Sbjct: 322 REAGPHPDRVTMIEVLSACSTIGALDLG-KWVETHASEKGLQHDVYVASALIDMYAKCGS 380

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
           LD+A R  + +P K+  + W  ++S+ + H     A  +  R+
Sbjct: 381 LDDAVRVFESMPHKN-EVSWNAMISALAFHGQAQEALSLFRRM 422


>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
           trifida]
 gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
          Length = 575

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 200/537 (37%), Positives = 311/537 (57%), Gaps = 15/537 (2%)

Query: 32  TSFRGLKQIHAVTIKT--HLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVL 89
           TS     Q+HA  +K+  +  N      KL  F   +P+   + +A  +   +  P+   
Sbjct: 4   TSMTQAMQLHARILKSGAYDSNHGQDFHKLFTFSALSPS-GDLNYARHILRTLHTPNSFY 62

Query: 90  FNTMARGYSRSKTPIRAIFLFVELLN------SGLLPDDYSFPSLLKACACVGAEALEEG 143
           +NTM R YS S  P RA  LF+ + N      +   PD +++P +LKAC+  G      G
Sbjct: 63  YNTMIRAYSDSTDPTRAFTLFLYMQNPDDASVAVPRPDHFTYPFVLKACSKSGHARF--G 120

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
           KQ+H    K G+ S+ Y+   LI+LY+   +   A ++F+ + +  VVS+ +II  +  +
Sbjct: 121 KQIHGLVFKSGVGSDRYINNALIHLYSVSGEPNLAYKVFDKMPDRDVVSWTSIIDGFVDN 180

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
            RP EA+ LF  + E  ++P +VT+ S L +CA  G+L+ G+ IH ++K+        V+
Sbjct: 181 DRPIEAIRLFTHMIENGIEPNEVTVASVLRACADTGALNTGERIHSFVKEKNFSSNANVS 240

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
           TALIDM+AKCG +D A+ VFD    KD   W+A+I   A+HG   K+I  FE M K+ V 
Sbjct: 241 TALIDMYAKCGCIDGALEVFDETLEKDVYVWTAIIAGLASHGLCMKAIEFFENMKKSDVK 300

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
            DE     +L A  + GLV EG  +F  ++ K+ I P I+HYGC+VD+L RAGRL +A  
Sbjct: 301 MDERAITAVLSAYRNAGLVSEGLLFFRRLK-KHKIKPTIQHYGCVVDMLTRAGRLKDAEE 359

Query: 384 FIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE--RIFELDDSHGGDYVILSNLCARA 441
           FI ++PI+   +LWRTL+  C    ++  +++++    +  +D    G YV+L N+ A  
Sbjct: 360 FIRKMPIEPDAVLWRTLIWGCKILGDVERSERLVRELELLNMDSRDTGSYVLLENVYAAT 419

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           G+WE+    R+LM  RG++K P CS IE++ VV EF +GD  H  +T + + L+++ + L
Sbjct: 420 GKWEEKAKTRELMYQRGLMKPPACSRIEIDGVVHEFTAGDSRHDEATAVYEKLEDVEERL 479

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +  GY P  S V   +++D+EK   L +HSEKLA++FGL+ + PG+ IR+VKNLR C
Sbjct: 480 RGEGYNPIVSEVLL-EIDDDEKASQLLHHSEKLAVSFGLVKSSPGSVIRIVKNLRSC 535


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 194/534 (36%), Positives = 314/534 (58%), Gaps = 6/534 (1%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           L L  R  +    K  H   I+  L+ D+ +L  LIN  ++      +E A  +FD + E
Sbjct: 68  LQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSK---CGFVELARQVFDGMLE 124

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
             +V +NTM   Y+R++    A+ +F+E+ N G    +++  S+L AC  V  +ALE  K
Sbjct: 125 RSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACG-VNCDALE-CK 182

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           +LHC ++K  ++ NLYV T L++LYA+C  ++ A ++FE++ +   V++++++  Y ++ 
Sbjct: 183 KLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNK 242

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
              EAL L+R  Q  +L+    T+ S + +C+ L +L  GK +H  I K G    V V +
Sbjct: 243 NYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVAS 302

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
           + +DM+AKCG L ++  +F  +  K+ + W+ +I  +A H +  + +++FE+M +  + P
Sbjct: 303 SAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHP 362

Query: 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF 384
           +E+TF  LL  C HTGLV+EG  +F  MR  YG+ P + HY CMVD+LGRAG L EAY  
Sbjct: 363 NEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYEL 422

Query: 385 IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444
           I  +P   T  +W +LL+SC  + NL LA+   E++FEL+  + G++V+LSN+ A   +W
Sbjct: 423 IKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQW 482

Query: 445 EDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMV 504
           E++   RKL++D  V KV G S I++ + V  F  G+  H    ++   LD LV + +  
Sbjct: 483 EEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKF 542

Query: 505 GYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           GY P      H D+E  +KE  L  HSEKLA+ FGL+  P  + +R++KNLR+C
Sbjct: 543 GYKPSVEHELH-DVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRIC 595


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 191/539 (35%), Positives = 307/539 (56%), Gaps = 16/539 (2%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDR 81
           SL+  C  +R L   + IHA    +     + +   LI+ +C       ++  A  +FD 
Sbjct: 69  SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCK----CGAVADARRVFDG 124

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +P  D+  + ++  GY+++  P  A+ L   +L     P+ ++F SLLKA     +  + 
Sbjct: 125 MPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGI- 183

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G+Q+H   +K   + ++YV + L+++YA C  ++ A  +F+ +     VS+NA+I  +A
Sbjct: 184 -GEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFA 242

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           R       L +F E+Q    + T  T  S  S+ A +G+L+ GKW+H ++ K G      
Sbjct: 243 RKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAF 302

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V   ++DM+AK G + DA  VFD +  KD   W++M+ A+A +G G +++  FEEM K  
Sbjct: 303 VGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCG 362

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           V  ++ITFL +L ACSH GLV EG  YF  M++ Y + P I HY  +VDLLGRAG L++A
Sbjct: 363 VHLNQITFLSILTACSHGGLVKEGKQYFDMMKE-YNLEPEIDHYVTVVDLLGRAGLLNDA 421

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
             FI ++P+K T  +W  LL SC  H N  + +   + +FELD    G  V+L N+ A  
Sbjct: 422 LVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYAST 481

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           G+W+    +RK+MK  GV K P CS +E+ N V  F + D  H  S ++ K  +E+  ++
Sbjct: 482 GQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQI 541

Query: 502 KMVGYVPDTS--LVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +  GYVP+T   L+H   ++++E++  L+YHSEK+A+ F L+N P G TIR++KN+R+C
Sbjct: 542 RKAGYVPNTDYVLLH---VDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRIC 597



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 2/187 (1%)

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
           +  R L  T     S +++CA   SLD  + IH ++        V ++ +LI ++ KCG 
Sbjct: 55  VDARELAATPRLYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGA 114

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           + DA  VFD M  +D  +W+++I  YA +    +++ +   M++ +  P+  TF  LL A
Sbjct: 115 VADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKA 174

Query: 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
              +     G    +++  KY     +     ++D+  R GR+D A    D+L  K+  +
Sbjct: 175 AGASASSGIG-EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNG-V 232

Query: 396 LWRTLLS 402
            W  L++
Sbjct: 233 SWNALIA 239


>gi|414867972|tpg|DAA46529.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 993

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 210/552 (38%), Positives = 309/552 (55%), Gaps = 12/552 (2%)

Query: 10  TQSPPPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQN 66
           T   PP    N+    S L  C+S   L   + IHA+ ++  LQN L +   L+   T  
Sbjct: 341 TDEGPP----NSMTFSSALGACSSPEALMNGRTIHAMILQRSLQNVLLIGNSLL---TMY 393

Query: 67  PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFP 126
              +SME    +F+ +P  D+V  N +  GY+  +    A+ +F  +  +G+ P+  +  
Sbjct: 394 SKCNSMEDTERVFESMPCYDVVSCNVLTGGYAALEDVANAMRVFSWMRGTGIKPNYITMI 453

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS 186
           +L   C  +G +    G  LH +  + GL S+ Y+  +LI +YA C D+E++  IF  I+
Sbjct: 454 NLQGTCKSLG-DLHSYGMPLHAYVTQTGLLSDEYITNSLITMYATCGDLESSTGIFSRIN 512

Query: 187 EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW 246
              V+S+NAII A  R  R  EA+ LF + Q    K     +   LSS A L SL+ G  
Sbjct: 513 NKSVISWNAIIAANVRHGRGEEAIKLFMDSQHAGNKLDRFCLAECLSSSANLASLEEGMQ 572

Query: 247 IHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ 306
           +H    K GLD    V  A +DM+ KCG++D  +    + + + TQ W+ +I  YA +G 
Sbjct: 573 LHGLSVKNGLDCDSHVVNATMDMYGKCGKMDCMLKTLPDPAHRPTQCWNTLISGYARYGY 632

Query: 307 GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG 366
             ++   F+ M+     PD +TF+ LL ACSH GL+D+G +Y+ SM   +G+ PGIKH  
Sbjct: 633 FKEAEDTFKHMVSVGQKPDYVTFVALLSACSHAGLIDKGMDYYNSMAPTFGVSPGIKHCV 692

Query: 367 CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
           C+VDLLGR G+  EA +FIDE+P+    ++WR+LLSS  +H NL + ++  + + ELD  
Sbjct: 693 CIVDLLGRLGKFAEAEKFIDEMPVLPNDLIWRSLLSSSRTHKNLDIGRKAAKNLLELDPF 752

Query: 427 HGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSY 486
               YV+LSNL A   RW DVD LR  MK   + K P CS +++ N V  F  GD  H +
Sbjct: 753 DDSAYVLLSNLYATNARWVDVDKLRSHMKTIKLNKRPACSWLKLKNEVSTFGIGDRSHMH 812

Query: 487 STDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPG 546
           +  +   LDE++ +L+ VGYV DTS   H D ++E+KE  L  HSEKLA+ +GLL  P G
Sbjct: 813 AEKIYVKLDEILLKLREVGYVADTSSALH-DTDEEQKEHNLWNHSEKLALAYGLLVVPEG 871

Query: 547 TTIRVVKNLRVC 558
           +TIR+ KNLRVC
Sbjct: 872 STIRIFKNLRVC 883



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 94/393 (23%), Positives = 182/393 (46%), Gaps = 12/393 (3%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           Q+ A  + + L   ++V   LI   T       ++ A  LFDR+ E D + +N M   YS
Sbjct: 166 QVTAHVVVSGLLTHVSVANSLI---TMFGNLRRVQDAERLFDRMEERDRISWNAMISMYS 222

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
             +   +   +  ++ +  + PD  +  SL+  CA     AL  G  +H   +  GL+ +
Sbjct: 223 HEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVAL--GSGIHSLCVSSGLHCS 280

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEAL-SLFRELQ 217
           + +   L+N+Y+    ++ A  +F N+S   V+S+N +I++Y +S+   EAL +L + LQ
Sbjct: 281 VPLINALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQ 340

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
                P  +T  SAL +C+   +L  G+ IH  I +  L   + +  +L+ M++KC  ++
Sbjct: 341 TDEGPPNSMTFSSALGACSSPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSME 400

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           D   VF++M   D  + + +   YA       ++ +F  M    + P+ IT + L   C 
Sbjct: 401 DTERVFESMPCYDVVSCNVLTGGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCK 460

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
             G +       ++   + G++        ++ +    G L+ +      +  KS  I W
Sbjct: 461 SLGDLHSYGMPLHAYVTQTGLLSDEYITNSLITMYATCGDLESSTGIFSRINNKSV-ISW 519

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430
             ++++   H   G  ++ I ++F +D  H G+
Sbjct: 520 NAIIAANVRH---GRGEEAI-KLF-MDSQHAGN 547



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 144/304 (47%), Gaps = 3/304 (0%)

Query: 123 YSFPSLLKACACVG-AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRI 181
           ++  SL+ AC   G  E    G  +H    + GL  N+Y+ T L++LY     V  A+R+
Sbjct: 42  FALASLVTACEHRGWQEGAACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRL 101

Query: 182 FENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSL 241
           F  + +  VVS+ AI+ A + +    EAL  +R +++  +      + + +S C  L   
Sbjct: 102 FWEMPQRNVVSWTAIMVALSSNGCMEEALVAYRRMRKEGVMCNANALATVVSLCGALEDE 161

Query: 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
             G  +  ++   GL  +V V  +LI M     R+ DA  +FD M  +D  +W+AMI  Y
Sbjct: 162 VAGLQVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMY 221

Query: 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG 361
           +      K  ++  +M   +V PD  T   L+  C+ + LV  G +  +S+    G+   
Sbjct: 222 SHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVALG-SGIHSLCVSSGLHCS 280

Query: 362 IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421
           +     +V++   AG+LDEA      +  +   I W T++SS    N+   A + + ++ 
Sbjct: 281 VPLINALVNMYSTAGKLDEAESLFRNMSRRDV-ISWNTMISSYVQSNSCVEALETLGQLL 339

Query: 422 ELDD 425
           + D+
Sbjct: 340 QTDE 343



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 157/322 (48%), Gaps = 13/322 (4%)

Query: 24  ALSLLPRCTSFRGLKQ-------IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           AL+ L      RG ++       IHA+T +  L  ++ + T L++      +   + +A 
Sbjct: 43  ALASLVTACEHRGWQEGAACGAAIHALTHRAGLMGNVYIGTALLHL---YGSRGLVLNAQ 99

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            LF  +P+ ++V +  +    S +     A+  +  +   G++ +  +  +++  C  + 
Sbjct: 100 RLFWEMPQRNVVSWTAIMVALSSNGCMEEALVAYRRMRKEGVMCNANALATVVSLCGALE 159

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
            E    G Q+    +  GL +++ V  +LI ++     V+ A R+F+ + E   +S+NA+
Sbjct: 160 DEV--AGLQVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAM 217

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           I+ Y+     ++   +  +++   +KP   T+ S +S CA    + LG  IH      GL
Sbjct: 218 ISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGL 277

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
              V +  AL++M++  G+LD+A S+F NMS +D  +W+ MI +Y       +++    +
Sbjct: 278 HCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQ 337

Query: 317 MMKA-QVSPDEITFLGLLYACS 337
           +++  +  P+ +TF   L ACS
Sbjct: 338 LLQTDEGPPNSMTFSSALGACS 359



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 98/215 (45%), Gaps = 7/215 (3%)

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD---LGKWIH 248
           S+   ++  AR    + A +L R ++ER++  +   + S +++C   G  +    G  IH
Sbjct: 8   SWYTAVSGCARCGLESTAFTLLRVMRERDVPLSGFALASLVTACEHRGWQEGAACGAAIH 67

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
               + GL   V + TAL+ ++   G + +A  +F  M  ++  +W+A++VA +++G   
Sbjct: 68  ALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVALSSNGCME 127

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKY-GIVPGIKHYGC 367
           ++++ +  M K  V  +      ++  C    L DE      +      G++  +     
Sbjct: 128 EALVAYRRMRKEGVMCNANALATVVSLCG--ALEDEVAGLQVTAHVVVSGLLTHVSVANS 185

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
           ++ + G   R+ +A R  D +  +   I W  ++S
Sbjct: 186 LITMFGNLRRVQDAERLFDRMEERDR-ISWNAMIS 219


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 196/522 (37%), Positives = 317/522 (60%), Gaps = 7/522 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +Q+H++  K     ++ V T L++   +    + M  A  +FD++PE ++V +N+M  G+
Sbjct: 30  QQLHSLIHKHGFDANIFVGTALVDMYAK---CADMHSAVRVFDQMPERNLVSWNSMIVGF 86

Query: 98  SRSKTPIRAIFLFVELLNSG-LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
             +    RA+ +F ++L    ++P++ S  S+L ACA +G   L  G+Q+H   +K GL 
Sbjct: 87  FHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGG--LNFGRQVHGVVVKFGLV 144

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
              YV  +L+++Y +C   +   ++F+ + +  VV++N ++  + ++ +  EA + F  +
Sbjct: 145 PLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVM 204

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           +   + P + +  + L S A L +L  G  IH+ I K G  K + +  +LI M+AKCG L
Sbjct: 205 RREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSL 264

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
            DA  VF+ +   +  +W+AMI AY  HG  ++ I +FE M+   + P  +TF+ +L AC
Sbjct: 265 VDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSAC 324

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           SHTG V+EG  +F SM+  + + PG +HY CMVDLLGRAG LDEA RFI+ +P+K TP +
Sbjct: 325 SHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSV 384

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
           W  LL +C  + NL + ++  ER+FE++  + G+YV+L+N+C R+GR E+ + +R+LM  
Sbjct: 385 WGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGV 444

Query: 457 RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHG 516
            GV K PGCS I+V N+   F + D  HS S ++ K L++L K +K  GYV +T  V + 
Sbjct: 445 NGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLEKLVKKKGYVAETEFVTN- 503

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +E+ E+E  L YHSEKLA+ FGLL  P  + IR+ KNLR C
Sbjct: 504 HLEENEEEQGLWYHSEKLALAFGLLTLPIDSPIRIKKNLRTC 545



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 185/337 (54%), Gaps = 14/337 (4%)

Query: 116 SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDV 175
           SG  P+ ++F S+L A A      +  G+QLH    K G ++N++V T L+++YA+C+D+
Sbjct: 4   SGPYPNQFTFSSILSASA--ATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADM 61

Query: 176 EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE-LQERNLKPTDVTMLSALSS 234
            +A R+F+ + E  +VS+N++I  +  ++  + A+ +F++ L+E+ + P +V++ S LS+
Sbjct: 62  HSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSA 121

Query: 235 CALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAW 294
           CA +G L+ G+ +H  + K+GL     V  +L+DM+ KC   D+ V +F  +  +D   W
Sbjct: 122 CANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTW 181

Query: 295 SAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD 354
           + +++ +  + +  ++   F  M +  + PDE +F  +L++ +    + +G    +    
Sbjct: 182 NVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQG-TAIHDQII 240

Query: 355 KYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAK 414
           K G V  +   G ++ +  + G L +AY+  + +   +  I W  ++S+   H   G A 
Sbjct: 241 KLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNV-ISWTAMISAYQLH---GCAN 296

Query: 415 QVIERIFELDDSHGGD-----YVILSNLCARAGRWED 446
           QVIE +FE   S G +     +V + + C+  GR E+
Sbjct: 297 QVIE-LFEHMLSEGIEPSHVTFVCVLSACSHTGRVEE 332


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  361 bits (927), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 191/539 (35%), Positives = 307/539 (56%), Gaps = 16/539 (2%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDR 81
           SL+  C  +R L   + IHA    +     + +   LI+ +C       ++  A  +FD 
Sbjct: 69  SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCK----CGAVADARRVFDG 124

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +P  D+  + ++  GY+++  P  A+ L   +L     P+ ++F SLLKA     +  + 
Sbjct: 125 MPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGI- 183

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G+Q+H   +K   + ++YV + L+++YA C  ++ A  +F+ +     VS+NA+I  +A
Sbjct: 184 -GEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFA 242

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           R       L +F E+Q    + T  T  S  S+ A +G+L+ GKW+H ++ K G      
Sbjct: 243 RKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAF 302

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V   ++DM+AK G + DA  VFD +  KD   W++M+ A+A +G G +++  FEEM K  
Sbjct: 303 VGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCG 362

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           V  ++ITFL +L ACSH GLV EG  YF  M++ Y + P I HY  +VDLLGRAG L++A
Sbjct: 363 VHLNQITFLSILTACSHGGLVKEGKQYFDMMKE-YNLEPEIDHYVTVVDLLGRAGLLNDA 421

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
             FI ++P+K T  +W  LL SC  H N  + +   + +FELD    G  V+L N+ A  
Sbjct: 422 LVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYAST 481

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           G+W+    +RK+MK  GV K P CS +E+ N V  F + D  H  S ++ K  +E+  ++
Sbjct: 482 GQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQI 541

Query: 502 KMVGYVPDTS--LVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +  GYVP+T   L+H   ++++E++  L+YHSEK+A+ F L+N P G TIR++KN+R+C
Sbjct: 542 RKAGYVPNTDYVLLH---VDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRIC 597



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 2/187 (1%)

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
           +  R L  T     S +++CA   SLD  + IH ++        V ++ +LI ++ KCG 
Sbjct: 55  VDARELAATPRLYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGA 114

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           + DA  VFD M  +D  +W+++I  YA +    +++ +   M++ +  P+  TF  LL A
Sbjct: 115 VADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKA 174

Query: 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
              +     G    +++  KY     +     ++D+  R GR+D A    D+L  K+  +
Sbjct: 175 AGASASSGIG-EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNG-V 232

Query: 396 LWRTLLS 402
            W  L++
Sbjct: 233 SWNALIA 239


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  361 bits (927), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 204/552 (36%), Positives = 307/552 (55%), Gaps = 37/552 (6%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +QIH    K   Q+ L V + L++   +   T  +  A+ +F+ IPE +IV++NTM  G 
Sbjct: 158 RQIHGQIFKFGYQSYLFVGSPLVDMYAK---TGFINDANRIFEEIPEKNIVVYNTMITGL 214

Query: 98  SRSKTPIRAIFLF-------------------------------VELLNSGLLPDDYSFP 126
            R +  + A  LF                                E+   G   D ++F 
Sbjct: 215 LRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFG 274

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS 186
           S+L AC   G  AL+EGKQ+H + I+     N++V + L+++Y +C +V+ A  +F  + 
Sbjct: 275 SVLTACG--GFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMR 332

Query: 187 EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW 246
              V+S+ A++  Y ++    EA+ +F ++Q   + P D T+ S +SSCA L SL+ G  
Sbjct: 333 HKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQ 392

Query: 247 IHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ 306
            H      GL  +V V+ ALI ++ KCG L+ A  +F  M  +D  +W+A++  YA  G+
Sbjct: 393 FHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGK 452

Query: 307 GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG 366
            +++I +FE M+   + PD +TF+G+L ACS  GLV++G++YF  M  ++ I P   HY 
Sbjct: 453 ANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYT 512

Query: 367 CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
           CM+DLL RAGRL+EA  FI+++P     I W TLLSSC  + NL + K   E + +L+  
Sbjct: 513 CMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQ 572

Query: 427 HGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSY 486
           +   Y++LS++ A  G+W+DV  LRK M++ GV K PG S I+  N V  F + D    +
Sbjct: 573 NPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSADDRSSPF 632

Query: 487 STDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPG 546
           S  +   L+ L  ++   GYVPD S V H D+E  EK   L +HSEKLAI FGLL  P G
Sbjct: 633 SDQIYAKLESLYLKMIEEGYVPDMSFVLH-DVEKSEKIKMLNHHSEKLAIAFGLLFIPDG 691

Query: 547 TTIRVVKNLRVC 558
             IRVVKNLRVC
Sbjct: 692 LQIRVVKNLRVC 703



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 110/424 (25%), Positives = 202/424 (47%), Gaps = 46/424 (10%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP-DDYSFPSLLKACACVG 136
           +FD +P  D+V +N++  GY+ +     ++ ++  +L  G +  +  +F ++L   +  G
Sbjct: 93  VFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRG 152

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
              L  G+Q+H    K G  S L+V + L+++YA+   +  A RIFE I E  +V YN +
Sbjct: 153 FVDL--GRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTM 210

Query: 197 ITAYARSSRPNEALSLFRELQERN-----------------------LKPTDV------- 226
           IT   R     EA  LF  + E++                        K   +       
Sbjct: 211 ITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQ 270

Query: 227 -TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285
            T  S L++C    +LD GK IH YI +      + V +AL+DM+ KC  +  A +VF  
Sbjct: 271 FTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRK 330

Query: 286 MSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
           M  K+  +W+AM+V Y  +G   +++ +F +M + ++ PD+ T   ++ +C++   ++EG
Sbjct: 331 MRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEG 390

Query: 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS 405
              F+      G++  +     ++ L G+ G L+ A++   E+ I+   + W  L+   S
Sbjct: 391 AQ-FHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRD-EVSWTALV---S 445

Query: 406 SHNNLGLAKQVIERIFELDDSH-----GGDYVILSNLCARAGRWED-VDYLRKLMKDRGV 459
            +   G A + I  +FE   +H     G  +V + + C+RAG  E    Y   ++K+  +
Sbjct: 446 GYAQFGKANETIS-LFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRI 504

Query: 460 LKVP 463
             +P
Sbjct: 505 TPIP 508



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 153/296 (51%), Gaps = 12/296 (4%)

Query: 17  LCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSM 72
            C +     S+L  C  F  L   KQIHA  I+T  Q+++ V + L++ +C       ++
Sbjct: 266 FCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCK----CRNV 321

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
           ++A  +F ++   +++ +  M  GY ++     A+ +F ++  + + PDD++  S++ +C
Sbjct: 322 KYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSC 381

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
           A +   +LEEG Q H  A+  GL   + V   LI LY +C  +E A ++F  +     VS
Sbjct: 382 ANLA--SLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVS 439

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE-YI 251
           + A+++ YA+  + NE +SLF  +    + P  VT +  LS+C+  G ++ G    E  +
Sbjct: 440 WTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMV 499

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQ 306
           K++ +       T +ID+ ++ GRL++A +  + M    D   W+ ++ +   +G 
Sbjct: 500 KEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGN 555



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 121/275 (44%), Gaps = 63/275 (22%)

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
           C  A    + K+LHC  I+   N   ++   LIN Y +  D++ AR +F++I +P + S+
Sbjct: 15  CCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSW 74

Query: 194 NAIITAYAR-----------SSRPN--------------------EALSLFR-ELQERNL 221
           N +++AY++            S PN                    E++ ++   L++ ++
Sbjct: 75  NTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSV 134

Query: 222 KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVS 281
               +T  + L   +  G +DLG+ IH  I K+G   Y+ V + L+DM+AK G ++DA  
Sbjct: 135 NLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANR 194

Query: 282 V-------------------------------FDNMSGKDTQAWSAMIVAYATHGQGHKS 310
           +                               FDNM  KD+ +W+ +I     +G   ++
Sbjct: 195 IFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEA 254

Query: 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
           +  F+EM       D+ TF  +L AC     +DEG
Sbjct: 255 VDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEG 289



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 108/265 (40%), Gaps = 44/265 (16%)

Query: 26  SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S++  C +   L+   Q H   + + L   + V   LI   T      S+EHAH LF  +
Sbjct: 376 SVISSCANLASLEEGAQFHGQALASGLICFVTVSNALI---TLYGKCGSLEHAHQLFHEM 432

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
              D V +  +  GY++       I LF  +L  G++PD  +F  +L AC+  G   +E+
Sbjct: 433 KIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAG--LVEK 490

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G                         Y EC        + E+   P    Y  +I   +R
Sbjct: 491 GYH-----------------------YFEC-------MVKEHRITPIPDHYTCMIDLLSR 520

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
           + R  EA +   ++      P  +   + LSSC L G+L++GKW  E + K  L+     
Sbjct: 521 AGRLEEAKNFINQMP---FSPDAIGWATLLSSCRLNGNLEIGKWAAESLHK--LEPQNPA 575

Query: 263 NTALI-DMHAKCGRLDDAVSVFDNM 286
           +  L+  ++A  G+ DD   +   M
Sbjct: 576 SYILLSSIYAAKGKWDDVAKLRKGM 600



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 95/188 (50%), Gaps = 7/188 (3%)

Query: 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297
           LG L   + + ++I +  L  +      L+  ++K G L D   VFD+M   D  +W+++
Sbjct: 53  LGDLKNARNVFDHIPQPNLFSW----NTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSL 108

Query: 298 IVAYATHGQGHKSILMFEEMMK-AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKY 356
           +  YA +G   +S+ ++  M+K   V+ + ITF  +L   S+ G VD G    +    K+
Sbjct: 109 LSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLG-RQIHGQIFKF 167

Query: 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQV 416
           G    +     +VD+  + G +++A R  +E+P K+  +++ T+++       +  A+Q+
Sbjct: 168 GYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNI-VVYNTMITGLLRCRFIVEAEQL 226

Query: 417 IERIFELD 424
            + + E D
Sbjct: 227 FDNMPEKD 234


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  361 bits (927), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 191/521 (36%), Positives = 304/521 (58%), Gaps = 6/521 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +Q+H+  +K  ++ D  V   LI+  ++      ++ A ++FD +P  D++++N++  GY
Sbjct: 309 RQLHSALMKMDMEPDSFVGVGLIDMYSK---CGLLQDARMVFDLMPXKDVIVWNSIISGY 365

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           S     I A+ LF  +   GL  +  +  ++LK+ A  G++A    +Q+H  +IK G   
Sbjct: 366 SNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTA--GSQANGFCEQVHTISIKSGYQY 423

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           + YV  +L++ Y +C  +E A ++FE      +V+Y ++ITAY++     EAL ++  +Q
Sbjct: 424 DGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQ 483

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           +R++KP      S  ++CA L + + GK IH ++ K GL   V    +L++M+AKCG +D
Sbjct: 484 DRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSID 543

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           DA  +F+ +S +   +WSAMI   A HG G K++ +F +M+K  + P+ IT + +L AC+
Sbjct: 544 DASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACN 603

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H GLV E   +F  M   +GI P  +HY CMVD+LGR GRLDEA   + E+P +++  +W
Sbjct: 604 HAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVW 663

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             LL +   H N+ L +   E +  L+    G +++L+N+ A  G W++V  +R+ MK+ 
Sbjct: 664 GALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVAKVRRSMKNS 723

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
            V K PG S IE+ + V  F  GD  H  S ++   LD+L + L   GYVP      H D
Sbjct: 724 LVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLDDLRERLTSAGYVPMIETDLH-D 782

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +E  EKE  L +HSEKLA+ FGL+ TPPG  IRV KNLRVC
Sbjct: 783 VEQIEKEQLLWHHSEKLAVAFGLIATPPGAPIRVKKNLRVC 823



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 201/412 (48%), Gaps = 45/412 (10%)

Query: 90  FNTMARGYSRSKT-----PIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
           F+++ +G S ++       I  + L  E++++G+ P+++S  ++L ACA  G E    G 
Sbjct: 151 FSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACA--GLEDENYGM 208

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           ++H + IKLG +S+ +    L+++YA+    EAA  +F  I +P +VS+NA+I       
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHE 268

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
           + + AL L  ++    + P+  T+ SAL +CA +G + LG+ +H  + K  ++    V  
Sbjct: 269 KNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGV 328

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
            LIDM++KCG L DA  VFD M  KD   W+++I  Y+  G   +++ +F  M K  +  
Sbjct: 329 GLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEF 388

Query: 325 DEITFLGLLYACS-----------HTGLVDEGWNY----FYSMRDKYG------------ 357
           ++ T   +L + +           HT  +  G+ Y      S+ D YG            
Sbjct: 389 NQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVF 448

Query: 358 -IVPG--IKHYGCMVDLLGRAGRLDEA---YRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
            + P   +  Y  M+    + G  +EA   Y  + +  IK    ++ +L ++C++ +   
Sbjct: 449 EVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYE 508

Query: 412 LAKQVIERIFE---LDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460
             KQ+   + +   L D   G+ ++  N+ A+ G  +D   +   +  RG++
Sbjct: 509 QGKQIHVHVLKCGLLSDVFAGNSLV--NMYAKCGSIDDASCIFNEISWRGIV 558



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 197/409 (48%), Gaps = 16/409 (3%)

Query: 21  TPNALSLLPRCTSFRGLK------QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEH 74
           +PN  SL     +  GL+      ++H   IK    +D      L++   ++      E 
Sbjct: 185 SPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCP---EA 241

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +F  IP+PDIV +N +  G    +    A+ L  ++ +  + P  ++  S LKACA 
Sbjct: 242 AIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAA 301

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           +G   L  G+QLH   +K+ +  + +V   LI++Y++C  ++ AR +F+ +    V+ +N
Sbjct: 302 IGLVKL--GRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWN 359

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           +II+ Y+      EA+SLF  + +  L+    T+ + L S A   +    + +H    K 
Sbjct: 360 SIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKS 419

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
           G      V  +L+D + KC  L+DA  VF+    +D  A+++MI AY+ +G G +++ M+
Sbjct: 420 GYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMY 479

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
             M    + PD   F  L  AC++    ++G    +    K G++  +     +V++  +
Sbjct: 480 LRMQDRDIKPDAFIFSSLFNACANLSAYEQG-KQIHVHVLKCGLLSDVFAGNSLVNMYAK 538

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
            G +D+A    +E+  +   + W  ++   + H   G  ++ ++  +++
Sbjct: 539 CGSIDDASCIFNEISWRGI-VSWSAMIGGLAQH---GHGRKALQLFYQM 583



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 125/281 (44%), Gaps = 42/281 (14%)

Query: 166 INLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTD 225
           +NLY++C     AR++  + SEP +VS++A+I+ Y ++ R  EAL  + E+     K  +
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 226 VTMLSALSSCALLGSLDLGKWIHE------------------------------------ 249
            T  S L  C+L  +L+LGK IH                                     
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 250 ----YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
               Y+ K G D       AL+DM+AK G  + A++VF  +   D  +W+A+I     H 
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHE 268

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY 365
           +   ++ +  +M   +V+P   T    L AC+  GLV  G    +S   K  + P     
Sbjct: 269 KNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLG-RQLHSALMKMDMEPDSFVG 327

Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
             ++D+  + G L +A    D +P K   I+W +++S  S+
Sbjct: 328 VGLIDMYSKCGLLQDARMVFDLMPXKDV-IVWNSIISGYSN 367


>gi|449461643|ref|XP_004148551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g36730-like [Cucumis sativus]
          Length = 516

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 193/498 (38%), Positives = 294/498 (59%), Gaps = 5/498 (1%)

Query: 12  SPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSS 71
           S  PK  +     LSLL  C+S   L +IHA  + + LQND    T+L+     +P+ + 
Sbjct: 21  SSKPKFLSTKHQLLSLLNHCSSTNHLFEIHAQILVSGLQNDSFFTTELLRVAALSPSRNL 80

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
                LLF        + +N + RGYS S +P  AI LF E+   G+ P++ +FP LLKA
Sbjct: 81  SYGCSLLFHCHFHSATMPWNFIIRGYSSSDSPQEAISLFGEMRRRGVRPNNLTFPFLLKA 140

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           CA +    L+EGKQ H  AIK GL+ ++YV  TLI  Y  C  +  AR++F+ ++E  +V
Sbjct: 141 CATLAT--LQEGKQFHAIAIKCGLDLDVYVRNTLIYFYGSCKRMSGARKVFDEMTERTLV 198

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+NA+ITA   +   +EA+  F ++     +P + TM+  LS+CA LG+L LG+W+H  +
Sbjct: 199 SWNAVITACVENFCFDEAIDYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQV 258

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
              G+   V++ TA +DM+AK G +  A  VF+ +  K    WSAMI+  A HG  +++I
Sbjct: 259 VGRGMVLNVQLGTAFVDMYAKSGDVGCARHVFNCLKQKSVWTWSAMILGLAQHGFANEAI 318

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +F  MM + + P+ +TF+G+L ACSH GLVD+ ++YF  M   YGI P + HYG MVD+
Sbjct: 319 ELFTNMMSSPIVPNHVTFIGVLCACSHAGLVDKSYHYFNLMERVYGIKPMMIHYGSMVDV 378

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG---LAKQVIERIFELDDSHG 428
           LGRAG++ EAY  I  +P++  PI+WRTLLS+CS  +  G   +A++  +R+ EL+   G
Sbjct: 379 LGRAGQVKEAYELIMSMPVEPDPIVWRTLLSACSGRDVNGGAEVAEEARKRLLELEPKRG 438

Query: 429 GDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYST 488
           G+ V+++N  A  G W+     R+ MKDRG+ K+ G S IE+   +R+FFSG    +   
Sbjct: 439 GNVVMVANKFAELGMWKQAADYRRTMKDRGIKKMAGESCIELGGSLRKFFSGFDSRAAPD 498

Query: 489 DLQKALDELVKELKMVGY 506
            +   LD L   +++  +
Sbjct: 499 GIYDLLDGLNLHMQLTNF 516


>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
 gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
          Length = 864

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 194/534 (36%), Positives = 314/534 (58%), Gaps = 6/534 (1%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           L L  R  +    K  H   I+  L+ D+ +L  LIN  ++      +E A  +FD + E
Sbjct: 60  LQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSK---CGFVELARQVFDGMLE 116

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
             +V +NTM   Y+R++    A+ +F+E+ N G    +++  S+L AC  V  +ALE  K
Sbjct: 117 RSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACG-VNCDALE-CK 174

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           +LHC ++K  ++ NLYV T L++LYA+C  ++ A ++FE++ +   V++++++  Y ++ 
Sbjct: 175 KLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNK 234

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
              EAL L+R  Q  +L+    T+ S + +C+ L +L  GK +H  I K G    V V +
Sbjct: 235 NYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVAS 294

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
           + +DM+AKCG L ++  +F  +  K+ + W+ +I  +A H +  + +++FE+M +  + P
Sbjct: 295 SAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHP 354

Query: 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF 384
           +E+TF  LL  C HTGLV+EG  +F  MR  YG+ P + HY CMVD+LGRAG L EAY  
Sbjct: 355 NEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYEL 414

Query: 385 IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444
           I  +P   T  +W +LL+SC  + NL LA+   E++FEL+  + G++V+LSN+ A   +W
Sbjct: 415 IKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQW 474

Query: 445 EDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMV 504
           E++   RKL++D  V KV G S I++ + V  F  G+  H    ++   LD LV + +  
Sbjct: 475 EEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKF 534

Query: 505 GYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           GY P      H D+E  +KE  L  HSEKLA+ FGL+  P  + +R++KNLR+C
Sbjct: 535 GYKPSVEHELH-DVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRIC 587


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 191/524 (36%), Positives = 305/524 (58%), Gaps = 11/524 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           + +H   +K     +      L++  ++      ++ A ++F  +    +V + +M  GY
Sbjct: 316 RAVHCFGVKACFSREDRFCNTLLDMYSK---CGDLDSAKVVFREMSGRSVVSYTSMIAGY 372

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           +R      A+ LF E+   G+ PD Y+  ++L  CA      L+EGK++H +  +  +  
Sbjct: 373 AREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCA--RNRLLDEGKRVHEWIKENDMGF 430

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL- 216
           +++V   L+++YA+C  +  A  +F  +    ++S+N +I  Y+++   NEALSLF  L 
Sbjct: 431 DIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLL 490

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
            E+   P + T+   L +CA L + D G+ IH YI + G      V  +L+DM+AKCG L
Sbjct: 491 VEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGAL 550

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
             A  +FD+++ KD  +W+ MI  Y  HG G ++I +F +M +A + PDEI+F+ LLYAC
Sbjct: 551 LLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYAC 610

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           SH+GLVDEGW +F  MR +  I P ++HY C+VD+L R G L +AYRFI+ +PI     +
Sbjct: 611 SHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATI 670

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
           W  LL  C  H+++ LA++V E++FEL+  + G YV+++N+ A A +WE+V  LRK +  
Sbjct: 671 WGALLCGCRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQ 730

Query: 457 RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT--SLVH 514
           RG+ K PGCS IE+   V  F +GD  +  +  ++  L  +   +   GY P T  +L+ 
Sbjct: 731 RGLRKNPGCSWIEIKGRVNIFVAGDSSNPETEKIEAFLRGVRARMIEEGYSPLTKYALI- 789

Query: 515 HGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             D E+ EKE AL  HSEKLA+  G++++  G  IRV KNLRVC
Sbjct: 790 --DAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVC 831



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 113/387 (29%), Positives = 203/387 (52%), Gaps = 13/387 (3%)

Query: 33  SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNT 92
           S  G +Q+H   +K+      +V   L+ F  +N    S   A  +FD + E D++ +N+
Sbjct: 210 SVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDS---ARKVFDEMTERDVISWNS 266

Query: 93  MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
           +  GY  +    + + +FV++L SG+  D  +  S+   CA   +  +  G+ +HCF +K
Sbjct: 267 IINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCA--DSRLISLGRAVHCFGVK 324

Query: 153 LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL 212
              +     C TL+++Y++C D+++A+ +F  +S   VVSY ++I  YAR     EA+ L
Sbjct: 325 ACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKL 384

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           F E++E  + P   T+ + L+ CA    LD GK +HE+IK+  +   + V+ AL+DM+AK
Sbjct: 385 FEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAK 444

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM-KAQVSPDEITFLG 331
           CG + +A  VF  M  KD  +W+ +I  Y+ +   ++++ +F  ++ + + SPDE T   
Sbjct: 445 CGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVAC 504

Query: 332 LLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
           +L AC+     D+G   + Y MR+ Y     + +   +VD+  + G L  A    D++  
Sbjct: 505 VLPACASLSAFDKGREIHGYIMRNGYFSDRHVAN--SLVDMYAKCGALLLARLLFDDITS 562

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVI 417
           K   + W  +++    H   G  K+ I
Sbjct: 563 KDL-VSWTVMIAGYGMH---GFGKEAI 585



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 186/406 (45%), Gaps = 27/406 (6%)

Query: 45  IKTH--LQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKT 102
            +TH  L++D+ V   +I       T S    +   FDR     +   NT  R +  S  
Sbjct: 21  FQTHKELRSDVRVRKDVIFNRASLRTVSDRADSITTFDR----SVTDANTQLRRFCESGN 76

Query: 103 PIRAIFLFVELLNSGLLP-DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG--LNSNL 159
              A+ L   L  SG    D  +  S+L+ CA   +++L++GK++  F    G  L+SNL
Sbjct: 77  LKNAVKL---LHVSGKWDIDPRTLCSVLQLCA--DSKSLKDGKEVDNFIRGNGFVLDSNL 131

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
              + L  +Y  C D++ A R+F+ +     + +N ++   A+S   + ++ LF+++   
Sbjct: 132 --GSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSS 189

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
            ++    T      S + L S++ G+ +H YI K G  +   V  +L+  + K  R+D A
Sbjct: 190 GVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSA 249

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
             VFD M+ +D  +W+++I  Y ++G   K + +F +M+ + +  D  T + +   C+ +
Sbjct: 250 RKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADS 309

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRT 399
            L+  G    +    K       +    ++D+  + G LD A     E+  +S      +
Sbjct: 310 RLISLG-RAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVV----S 364

Query: 400 LLSSCSSHNNLGLAKQVIERIFELDDSHGGD---YVILS--NLCAR 440
             S  + +   GLA + + ++FE  +  G     Y + +  N CAR
Sbjct: 365 YTSMIAGYAREGLAGEAV-KLFEEMEEEGISPDVYTVTAVLNCCAR 409


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 198/521 (38%), Positives = 308/521 (59%), Gaps = 6/521 (1%)

Query: 38   KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
            K IHA ++KT    + +V   L++   +     ++E A L F+ +   D++L++ M   Y
Sbjct: 652  KGIHACSVKTLYDTERHVYGALLDMYAK---CGNIEDARLAFEMVTNDDVILWSLMISRY 708

Query: 98   SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            ++     +A  LF+ ++ S + P+++S  S+L+ACA      L+ GKQ+H  AIK+G  S
Sbjct: 709  AQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACA--NMPLLDLGKQIHNHAIKIGHES 766

Query: 158  NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
             L+V   LI+LYA+CSD+E++  IF ++ +   VS+N II  Y++S     ALS+FRE++
Sbjct: 767  ELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMR 826

Query: 218  ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              ++  T VT  S L +CA   S++    +H  I+K   +    V+ +LID +AKCG + 
Sbjct: 827  AASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIR 886

Query: 278  DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            DA  +F+ +   D  +W+A+I  YA HGQ   +  +F+ M K  +  ++ITF+ LL  C 
Sbjct: 887  DAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCG 946

Query: 338  HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
             TGLV +G + F SMR  +GI P ++HY C+V LLGRAGRL++A  FI ++P   + ++W
Sbjct: 947  STGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVW 1006

Query: 398  RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
            R LLSSC  H N+ L +   E++ E++      YV+LSN+ + AG  + V + RK M++ 
Sbjct: 1007 RALLSSCIVHKNVELGRFSAEKVLEIEPQDETTYVLLSNMYSAAGSLDQVAFFRKSMRNI 1066

Query: 458  GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
            GV K PG S +E+   V  F  G   H     +   L+ L  +    GYVPDT  V H D
Sbjct: 1067 GVRKEPGLSWVEIKGEVHAFSVGSEDHPCMRVINAMLEWLNLKAIREGYVPDTDEVLH-D 1125

Query: 518  MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +E+E+K   L  HSE+LA+ +GL+ TPPG  IR++KNLR C
Sbjct: 1126 LEEEQKVRMLWVHSERLALAYGLVMTPPGHPIRIMKNLRSC 1166



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 191/410 (46%), Gaps = 43/410 (10%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +FD I   D V +  M   YS +  P   + +F ++  +    + ++  S+L+A  C
Sbjct: 585 ARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVC 644

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           + +  L  GK +H  ++K   ++  +V   L+++YA+C ++E AR  FE ++   V+ ++
Sbjct: 645 LSSVVL--GKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWS 702

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
            +I+ YA+ ++  +A  LF  +   ++ P + ++ S L +CA +  LDLGK IH +  K 
Sbjct: 703 LMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKI 762

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
           G +  + V  ALID++AKC  ++ ++ +F ++   +  +W+ +IV Y+  G G  ++ +F
Sbjct: 763 GHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVF 822

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVD---------EGWNYFYSMRDKYGIVPGIKHY 365
            EM  A V   ++T+  +L AC+ T  ++         E   +         ++      
Sbjct: 823 REMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKC 882

Query: 366 GCMVD------------------------LLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
           GC+ D                        + G+A    E +  + +  IK+  I +  LL
Sbjct: 883 GCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALL 942

Query: 402 SSCSSHNNLGLAKQVIERIFELDDSHGGD-----YVILSNLCARAGRWED 446
           S C S    GL  Q +     +   HG +     Y  +  L  RAGR  D
Sbjct: 943 SVCGS---TGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLND 989



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 156/313 (49%), Gaps = 7/313 (2%)

Query: 35  RGLKQIHAVTIKTH--LQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNT 92
           RG + +H   +++    + DL     L+N  T+         AH +FD +PE ++V F T
Sbjct: 445 RGGRAVHGHVVRSGGLARLDLFCANVLLNMYTK---VGPFGSAHRVFDGLPERNMVSFVT 501

Query: 93  MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
           + +G++       A  LF  L   G   + +   ++LK    +    L  G  +H  A K
Sbjct: 502 LVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWG--VHACACK 559

Query: 153 LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL 212
           LG + N +V + LI+ Y+ C  V  ARR+F+ I     V++ A+++ Y+ +  P   L +
Sbjct: 560 LGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQI 619

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           F +++    K     + S L +   L S+ LGK IH    K   D    V  AL+DM+AK
Sbjct: 620 FSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAK 679

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
           CG ++DA   F+ ++  D   WS MI  YA   Q  ++  +F  MM++ VSP+E +   +
Sbjct: 680 CGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSV 739

Query: 333 LYACSHTGLVDEG 345
           L AC++  L+D G
Sbjct: 740 LQACANMPLLDLG 752


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 196/555 (35%), Positives = 310/555 (55%), Gaps = 36/555 (6%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           +KQ HA  +   L ND  + + L+ F   + ++   ++A  +++ I  P +   N M R 
Sbjct: 47  IKQAHARILVLGLANDGRITSHLLAFLAISSSSLPSDYALSIYNSISHPTVFATNNMIRC 106

Query: 97  YSRSKTPIRAIFLFVELLNSGLL-PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155
           + +   P  +I L+  +  S +  P+ ++   +L+AC+   A A+ EG Q+    IKLG 
Sbjct: 107 FVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACS--NAFAIREGAQVQTHVIKLGF 164

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENI-SEPCVVSYNAIITAYAR------------ 202
             +++V   LI+LY  C  VE+A+++F+ + S   VVS+N++I  + R            
Sbjct: 165 VKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFV 224

Query: 203 -------------------SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
                              +    +AL  F+EL E+ L+P +  ++S L++ A LG+L+ 
Sbjct: 225 EMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEY 284

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303
           GK IH             + TAL+DM+AKCG +D++  +FD M  KD  +W+ MI   AT
Sbjct: 285 GKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLAT 344

Query: 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK 363
           HG G +++ +FE+ +     P  +TF+G+L ACS  GLV EG ++F  M D YGI P ++
Sbjct: 345 HGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEME 404

Query: 364 HYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
           HYGCMVDLL RAG + +A   I+ +P    P+LW ++L SC  H  + L +++  ++ ++
Sbjct: 405 HYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLIQM 464

Query: 424 DDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGV 483
           D +H G YV L+ + AR  +WEDV  +R+LM +R   K+ G S IE    V  F +GD  
Sbjct: 465 DPTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAEGRVHRFVAGDKE 524

Query: 484 HSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNT 543
           H  +T++ K L+ +   +   GY  + S V H D+E+EEKE A++ HSE+LAI FGLL T
Sbjct: 525 HERTTEIYKMLEIMGVRIAAAGYSANVSSVLH-DIEEEEKENAIKEHSERLAIAFGLLVT 583

Query: 544 PPGTTIRVVKNLRVC 558
             G  IR++KNLRVC
Sbjct: 584 KDGDCIRIIKNLRVC 598



 Score = 45.1 bits (105), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 92/235 (39%), Gaps = 41/235 (17%)

Query: 16  KLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSM 72
           KL  N    +SLL        L   K+IH++          ++ T L++   +      +
Sbjct: 261 KLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTALVDMYAK---CGCI 317

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
           + +  LFDR+PE D   +N M  G +       A+ LF + L  G  P + +F  +L AC
Sbjct: 318 DESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTAC 377

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
           +  G   + EGK  H F +             + + Y                 EP +  
Sbjct: 378 SRAG--LVSEGK--HFFKL-------------MTDTYG---------------IEPEMEH 405

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
           Y  ++   +R+    +A+ +   +      P  V   S L SC + G ++LG+ I
Sbjct: 406 YGCMVDLLSRAGFVYDAVEMINRMPA---PPDPVLWASVLGSCQVHGFIELGEEI 457


>gi|357128440|ref|XP_003565881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Brachypodium distachyon]
          Length = 682

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 203/535 (37%), Positives = 314/535 (58%), Gaps = 6/535 (1%)

Query: 24  ALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           ALS      S+   +Q H   +K+ LQ    V   +++   Q    + +E A  +F+ + 
Sbjct: 114 ALSAAAHVRSYGMGRQCHGYAVKSGLQEHPYVCNAVLHMYCQ---CAHVEDAVKVFENVS 170

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
             DI  FN+M  G+        +I +   ++      D  S+ ++L  CA    + L  G
Sbjct: 171 GFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVEQWDHVSYVAVLGHCA--STKELLLG 228

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
            Q+H  A+K  L  N+YV + L+++Y +C     A   FE + E  VVS+ A++TAY ++
Sbjct: 229 CQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLPEKNVVSWTAVMTAYTQN 288

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
            R  +AL LF +L+   ++P + T   AL+SCA L +L  G  +     K G    + V 
Sbjct: 289 ERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALKNGNALSASAMKTGHWGALSVC 348

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
            AL++M++K G + DA  VF +M  +D  +W+++I+ YA HG   +++ +F +M+ A++ 
Sbjct: 349 NALMNMYSKSGSIHDAWRVFLSMPWRDVVSWNSVIIGYAHHGLAREAMCVFHDMLLAEIV 408

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
           P  +TF+G+L AC+  GLVDEG  Y   M  + GI PG +HY CMV LL RAGRLDEA +
Sbjct: 409 PSYVTFVGVLLACAQLGLVDEGLYYLNIMMKEMGIKPGREHYTCMVGLLCRAGRLDEAEQ 468

Query: 384 FIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443
           FI    I +  + W++LLSSC  + N GL  +V E+I +L  +  G YV+LSN+ A+A R
Sbjct: 469 FILSNCIGTDVVAWKSLLSSCQVYKNYGLGHRVAEQILQLKPNDVGTYVLLSNMYAKANR 528

Query: 444 WEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKM 503
           W+ V  +RKLM++RGV K PG S I+V + V  F S D  H +   +   L EL+ ++K+
Sbjct: 529 WDGVVKVRKLMRERGVRKEPGVSWIQVGSEVHVFTSEDKNHKWINQITIKLKELIGQIKV 588

Query: 504 VGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +GYVP+ ++V H D+E E+KE  L YHSEK+A+ FGL+++P G TIR++KNLR+C
Sbjct: 589 IGYVPNCAVVLH-DVEAEQKEEHLMYHSEKMALAFGLIHSPEGETIRIMKNLRIC 642



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 124/239 (51%), Gaps = 5/239 (2%)

Query: 165 LINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT 224
           LI  Y +C  +  AR++F+ +     VS N +++ YA + R ++AL+L   L+  +    
Sbjct: 51  LIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLMSGYASAGRHSDALAL---LKAADFSLN 107

Query: 225 DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFD 284
           +  + +ALS+ A + S  +G+  H Y  K GL ++  V  A++ M+ +C  ++DAV VF+
Sbjct: 108 EYVLSTALSAAAHVRSYGMGRQCHGYAVKSGLQEHPYVCNAVLHMYCQCAHVEDAVKVFE 167

Query: 285 NMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDE 344
           N+SG D  A+++MI  +   G+   SI +   M+      D ++++ +L  C+ T  +  
Sbjct: 168 NVSGFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVEQWDHVSYVAVLGHCASTKELLL 227

Query: 345 GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
           G    ++   K  +   +     +VD+ G+     +A+   + LP K+  + W  ++++
Sbjct: 228 GCQ-VHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLPEKNV-VSWTAVMTA 284


>gi|414867973|tpg|DAA46530.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 923

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 210/552 (38%), Positives = 309/552 (55%), Gaps = 12/552 (2%)

Query: 10  TQSPPPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQN 66
           T   PP    N+    S L  C+S   L   + IHA+ ++  LQN L +   L+   T  
Sbjct: 341 TDEGPP----NSMTFSSALGACSSPEALMNGRTIHAMILQRSLQNVLLIGNSLL---TMY 393

Query: 67  PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFP 126
              +SME    +F+ +P  D+V  N +  GY+  +    A+ +F  +  +G+ P+  +  
Sbjct: 394 SKCNSMEDTERVFESMPCYDVVSCNVLTGGYAALEDVANAMRVFSWMRGTGIKPNYITMI 453

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS 186
           +L   C  +G +    G  LH +  + GL S+ Y+  +LI +YA C D+E++  IF  I+
Sbjct: 454 NLQGTCKSLG-DLHSYGMPLHAYVTQTGLLSDEYITNSLITMYATCGDLESSTGIFSRIN 512

Query: 187 EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW 246
              V+S+NAII A  R  R  EA+ LF + Q    K     +   LSS A L SL+ G  
Sbjct: 513 NKSVISWNAIIAANVRHGRGEEAIKLFMDSQHAGNKLDRFCLAECLSSSANLASLEEGMQ 572

Query: 247 IHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ 306
           +H    K GLD    V  A +DM+ KCG++D  +    + + + TQ W+ +I  YA +G 
Sbjct: 573 LHGLSVKNGLDCDSHVVNATMDMYGKCGKMDCMLKTLPDPAHRPTQCWNTLISGYARYGY 632

Query: 307 GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG 366
             ++   F+ M+     PD +TF+ LL ACSH GL+D+G +Y+ SM   +G+ PGIKH  
Sbjct: 633 FKEAEDTFKHMVSVGQKPDYVTFVALLSACSHAGLIDKGMDYYNSMAPTFGVSPGIKHCV 692

Query: 367 CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
           C+VDLLGR G+  EA +FIDE+P+    ++WR+LLSS  +H NL + ++  + + ELD  
Sbjct: 693 CIVDLLGRLGKFAEAEKFIDEMPVLPNDLIWRSLLSSSRTHKNLDIGRKAAKNLLELDPF 752

Query: 427 HGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSY 486
               YV+LSNL A   RW DVD LR  MK   + K P CS +++ N V  F  GD  H +
Sbjct: 753 DDSAYVLLSNLYATNARWVDVDKLRSHMKTIKLNKRPACSWLKLKNEVSTFGIGDRSHMH 812

Query: 487 STDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPG 546
           +  +   LDE++ +L+ VGYV DTS   H D ++E+KE  L  HSEKLA+ +GLL  P G
Sbjct: 813 AEKIYVKLDEILLKLREVGYVADTSSALH-DTDEEQKEHNLWNHSEKLALAYGLLVVPEG 871

Query: 547 TTIRVVKNLRVC 558
           +TIR+ KNLRVC
Sbjct: 872 STIRIFKNLRVC 883



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 94/393 (23%), Positives = 182/393 (46%), Gaps = 12/393 (3%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           Q+ A  + + L   ++V   LI   T       ++ A  LFDR+ E D + +N M   YS
Sbjct: 166 QVTAHVVVSGLLTHVSVANSLI---TMFGNLRRVQDAERLFDRMEERDRISWNAMISMYS 222

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
             +   +   +  ++ +  + PD  +  SL+  CA     AL  G  +H   +  GL+ +
Sbjct: 223 HEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVAL--GSGIHSLCVSSGLHCS 280

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEAL-SLFRELQ 217
           + +   L+N+Y+    ++ A  +F N+S   V+S+N +I++Y +S+   EAL +L + LQ
Sbjct: 281 VPLINALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQ 340

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
                P  +T  SAL +C+   +L  G+ IH  I +  L   + +  +L+ M++KC  ++
Sbjct: 341 TDEGPPNSMTFSSALGACSSPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSME 400

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           D   VF++M   D  + + +   YA       ++ +F  M    + P+ IT + L   C 
Sbjct: 401 DTERVFESMPCYDVVSCNVLTGGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCK 460

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
             G +       ++   + G++        ++ +    G L+ +      +  KS  I W
Sbjct: 461 SLGDLHSYGMPLHAYVTQTGLLSDEYITNSLITMYATCGDLESSTGIFSRINNKSV-ISW 519

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430
             ++++   H   G  ++ I ++F +D  H G+
Sbjct: 520 NAIIAANVRH---GRGEEAI-KLF-MDSQHAGN 547



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 144/304 (47%), Gaps = 3/304 (0%)

Query: 123 YSFPSLLKACACVG-AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRI 181
           ++  SL+ AC   G  E    G  +H    + GL  N+Y+ T L++LY     V  A+R+
Sbjct: 42  FALASLVTACEHRGWQEGAACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRL 101

Query: 182 FENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSL 241
           F  + +  VVS+ AI+ A + +    EAL  +R +++  +      + + +S C  L   
Sbjct: 102 FWEMPQRNVVSWTAIMVALSSNGCMEEALVAYRRMRKEGVMCNANALATVVSLCGALEDE 161

Query: 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
             G  +  ++   GL  +V V  +LI M     R+ DA  +FD M  +D  +W+AMI  Y
Sbjct: 162 VAGLQVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMY 221

Query: 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG 361
           +      K  ++  +M   +V PD  T   L+  C+ + LV  G +  +S+    G+   
Sbjct: 222 SHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVALG-SGIHSLCVSSGLHCS 280

Query: 362 IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421
           +     +V++   AG+LDEA      +  +   I W T++SS    N+   A + + ++ 
Sbjct: 281 VPLINALVNMYSTAGKLDEAESLFRNMSRRDV-ISWNTMISSYVQSNSCVEALETLGQLL 339

Query: 422 ELDD 425
           + D+
Sbjct: 340 QTDE 343



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 157/322 (48%), Gaps = 13/322 (4%)

Query: 24  ALSLLPRCTSFRGLKQ-------IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           AL+ L      RG ++       IHA+T +  L  ++ + T L++      +   + +A 
Sbjct: 43  ALASLVTACEHRGWQEGAACGAAIHALTHRAGLMGNVYIGTALLHL---YGSRGLVLNAQ 99

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            LF  +P+ ++V +  +    S +     A+  +  +   G++ +  +  +++  C  + 
Sbjct: 100 RLFWEMPQRNVVSWTAIMVALSSNGCMEEALVAYRRMRKEGVMCNANALATVVSLCGALE 159

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
            E    G Q+    +  GL +++ V  +LI ++     V+ A R+F+ + E   +S+NA+
Sbjct: 160 DEV--AGLQVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAM 217

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           I+ Y+     ++   +  +++   +KP   T+ S +S CA    + LG  IH      GL
Sbjct: 218 ISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGL 277

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
              V +  AL++M++  G+LD+A S+F NMS +D  +W+ MI +Y       +++    +
Sbjct: 278 HCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQ 337

Query: 317 MMKA-QVSPDEITFLGLLYACS 337
           +++  +  P+ +TF   L ACS
Sbjct: 338 LLQTDEGPPNSMTFSSALGACS 359



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 98/215 (45%), Gaps = 7/215 (3%)

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD---LGKWIH 248
           S+   ++  AR    + A +L R ++ER++  +   + S +++C   G  +    G  IH
Sbjct: 8   SWYTAVSGCARCGLESTAFTLLRVMRERDVPLSGFALASLVTACEHRGWQEGAACGAAIH 67

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
               + GL   V + TAL+ ++   G + +A  +F  M  ++  +W+A++VA +++G   
Sbjct: 68  ALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVALSSNGCME 127

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKY-GIVPGIKHYGC 367
           ++++ +  M K  V  +      ++  C    L DE      +      G++  +     
Sbjct: 128 EALVAYRRMRKEGVMCNANALATVVSLCG--ALEDEVAGLQVTAHVVVSGLLTHVSVANS 185

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
           ++ + G   R+ +A R  D +  +   I W  ++S
Sbjct: 186 LITMFGNLRRVQDAERLFDRMEERDR-ISWNAMIS 219


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 216/592 (36%), Positives = 315/592 (53%), Gaps = 75/592 (12%)

Query: 39  QIHAVTIKTHLQN-DLNVLTKLINFCTQNPTT-----SSMEHAHLLFDRIPEPDIVLFNT 92
           Q+H   +KT +     +VL  L++   +  +      S+M  A  LFD +P+ D + + T
Sbjct: 169 QMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTT 228

Query: 93  MARGYSRSK--TPIRAIF-LFVELLNS----------------------------GLLPD 121
           M  GY R+      R +F   VE L +                            G+  D
Sbjct: 229 MITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFD 288

Query: 122 DYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN----LYVCTTLINLYAECSDVEA 177
           D ++ +++ ACA VG+   + GKQ+H + +K  LN N    L V   LI LY + + V+ 
Sbjct: 289 DITYTTIISACANVGS--FQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDE 346

Query: 178 ARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNL---------------- 221
           AR+IF  +    ++++NAI++ Y  + R  EA S F E+  +NL                
Sbjct: 347 ARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFG 406

Query: 222 ---------------KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
                          +P D     AL++C++LG+L+ G+ +H  +   G +  + V  A+
Sbjct: 407 DEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAM 466

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           I M+AKCG ++ A SVF  M   D  +W++MI A   HG G K+I +F++M+K  V PD 
Sbjct: 467 ISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDR 526

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
           ITFL +L ACSH GLV++G +YF SM + YGI P   HY  MVDL  RAG    A   ID
Sbjct: 527 ITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVID 586

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWED 446
            +P K    +W  LL+ C  H N+ L  +  E++F+L   + G YV+LSN+ A  GRW +
Sbjct: 587 SMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNE 646

Query: 447 VDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGY 506
           V  +RKLM+D+ V K P CS IEV N V  F   D VH     + + L++L  E+K +GY
Sbjct: 647 VAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGY 706

Query: 507 VPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +PDT  V H DME E+KE AL  HSEKLA+ FG++  PPG T+RV KN+R+C
Sbjct: 707 IPDTKFVLH-DMEYEQKEHALSTHSEKLAVGFGIMKLPPGATVRVFKNIRIC 757



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 101/401 (25%), Positives = 170/401 (42%), Gaps = 89/401 (22%)

Query: 32  TSFRGLKQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPDI--- 87
            SF   + +HA  I +  +   + L +L+  +C     +S++ +A  LF+ IP PD    
Sbjct: 27  ASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCK----SSNLVYARQLFEEIPNPDAIAR 82

Query: 88  ------------------------------VLFNTMARGYSRSKTPIRAIFLFVELLNSG 117
                                         V +N M  GY+ +     A+ LF  +    
Sbjct: 83  TTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDD 142

Query: 118 LLPDDYSFPSLLKACAC-VGAEALEEGKQLHCFAIKLG--------LNSNLYV------- 161
             PDD++F S+L A    VG E  ++  Q+HC  +K G        LN+ L V       
Sbjct: 143 FRPDDFTFTSVLSALVLFVGNE--QQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASE 200

Query: 162 -------------------------CTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
                                     TT+I  Y    D+  AR +FE + E    ++NA+
Sbjct: 201 LGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAM 260

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           I+ Y       EAL+L R+++   ++  D+T  + +S+CA +GS  +GK +H YI K  L
Sbjct: 261 ISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNEL 320

Query: 257 DKY----VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           +      + V+ ALI ++ K  ++D+A  +F  M  ++   W+A++  Y   G+  ++  
Sbjct: 321 NPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKS 380

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
            FEEM    +    +T   ++   +  G  DEG   F  MR
Sbjct: 381 FFEEMPVKNL----LTLTVMISGLAQNGFGDEGLKLFKQMR 417



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 150/325 (46%), Gaps = 44/325 (13%)

Query: 33  SFRGLKQIHAVTIKTHLQND----LNVLTKLIN-FCTQNPTTSS---------------- 71
           SF+  KQ+HA  +K  L  +    L+V   LI  +C  N    +                
Sbjct: 304 SFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWN 363

Query: 72  -----------MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP 120
                      ME A   F+ +P  +++    M  G +++      + LF ++   G  P
Sbjct: 364 AILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEP 423

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
            D++F   L AC+ +GA  LE G+QLH   + LG  S+L V   +I++YA+C  VEAA  
Sbjct: 424 CDFAFAGALTACSVLGA--LENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAES 481

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
           +F  +    +VS+N++I A  +     +A+ LF ++ +  + P  +T L+ L++C+  G 
Sbjct: 482 VFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGL 541

Query: 241 LDLGK-WIHEYIKKYGL----DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAW 294
           ++ G+ + +  ++ YG+    D Y +    ++D+  + G    A  V D+M  K     W
Sbjct: 542 VEKGRHYFNSMLESYGITPCEDHYAR----MVDLFCRAGMFSYARIVIDSMPSKPGAPVW 597

Query: 295 SAMIVAYATHGQGHKSILMFEEMMK 319
            A++     HG     I   E++ K
Sbjct: 598 EALLAGCRIHGNMDLGIEAAEQLFK 622



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 127/306 (41%), Gaps = 51/306 (16%)

Query: 163 TTLINLYAECSDVEAARRIFEN--ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN 220
           TTLI  Y    ++E  R IF    +     V YNA+IT YA +   + AL LFR ++  +
Sbjct: 83  TTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDD 142

Query: 221 LKPTDVTMLSALSSCAL-LGSLDLGKWIHEYIKKYGLD-KYVKVNTALIDMHAK------ 272
            +P D T  S LS+  L +G+      +H  + K G+      V  AL+ ++ K      
Sbjct: 143 FRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELG 202

Query: 273 --CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
             C  +  A  +FD M  +D   W+ MI  Y  +   + +  +FE M++           
Sbjct: 203 ISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVEN---------- 252

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
                      +   WN          ++ G  H GC  + L    ++    RF   L I
Sbjct: 253 -----------LGAAWN---------AMISGYVHCGCFQEALTLCRKM----RF---LGI 285

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVIERIF--ELDDSHGGDYVILSNLCARAGRWEDVD 448
           +   I + T++S+C++  +  + KQV   I   EL+ +H     + + L     +   VD
Sbjct: 286 QFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVD 345

Query: 449 YLRKLM 454
             RK+ 
Sbjct: 346 EARKIF 351


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 199/542 (36%), Positives = 315/542 (58%), Gaps = 26/542 (4%)

Query: 20  NTPNALSLLPRCTS---FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           ++   +SLL  CT    F     IH+ +IK  L+++L                  +    
Sbjct: 179 DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESEL------------------LRDCQ 220

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +FDR+   D++ +N++ + Y  ++ P+RAI LF E+  S + PD  +  SL    + +G
Sbjct: 221 KVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLG 280

Query: 137 AEALEEGKQLHCFAIKLG-LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
              +   + +  F ++ G    ++ +   ++ +YA+   V++AR +F  +    V+S+N 
Sbjct: 281 D--IRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNT 338

Query: 196 IITAYARSSRPNEALSLFRELQERN-LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           II+ YA++   +EA+ ++  ++E   +     T +S L +C+  G+L  G  +H  + K 
Sbjct: 339 IISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKN 398

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
           GL   V V T+L DM+ KCGRL+DA+S+F  +   ++  W+ +I  +  HG G K++++F
Sbjct: 399 GLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLF 458

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
           +EM+   V PD ITF+ LL ACSH+GLVDEG   F  M+  YGI P +KHYGCMVD+ GR
Sbjct: 459 KEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGR 518

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
           AG+L+ A +FI  + ++    +W  LLS+C  H N+ L K   E +FE++  H G +V+L
Sbjct: 519 AGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLL 578

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
           SN+ A AG+WE VD +R +   +G+ K PG SS+EV+N V  F++G+  H    ++ + L
Sbjct: 579 SNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYREL 638

Query: 495 DELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
             L  +LKM+GYVPD   V   D+ED+EKE  L  HSE+LAI F L+ TP  TTIR+ KN
Sbjct: 639 TALQAKLKMIGYVPDHRFVLQ-DVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKN 697

Query: 555 LR 556
           LR
Sbjct: 698 LR 699



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 128/439 (29%), Positives = 212/439 (48%), Gaps = 64/439 (14%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQ---NPTTSSMEHAHLLFDRIPEPDIVLFNTMAR 95
           ++  + + TH  +D+ ++    N  T    +P  S M      FD I   D+  +N M  
Sbjct: 4   KVKRLMMFTHF-SDIALICNQPNVSTHVSLSPNKSKMH----TFDHIQNRDVYAWNLMIS 58

Query: 96  GYSR---SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
           GY R   S   IR   LF  +L+SGL PD  +FPS+LKAC  V      +G ++HC A+K
Sbjct: 59  GYGRAGNSSEVIRCFSLF--MLSSGLTPDYRTFPSVLKACRTV-----IDGNKIHCLALK 111

Query: 153 LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL 212
            G   ++YV  +LI+LY+    V  AR +F+ +    + S+NA+I+ Y +S    EAL+L
Sbjct: 112 FGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTL 171

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
              L+  +     VT++S LS+C   G  + G  IH Y  K+GL+  +            
Sbjct: 172 SNGLRAMD----SVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESEL------------ 215

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
              L D   VFD M  +D  +W+++I AY  + Q  ++I +F+EM  +++ PD +T + L
Sbjct: 216 ---LRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISL 272

Query: 333 LYACSHTGLVD-----EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
               S  G +      +G    +++R  +  +  I     +V +  + G +D A    + 
Sbjct: 273 ASILSQLGDIRACRSVQG----FTLRKGW-FLEDITIGNAVVVMYAKLGLVDSARAVFNW 327

Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG------GDYVILSNLCARA 441
           LP  +  I W T++S  + +   G A + IE ++ + +  G      G +V +   C++A
Sbjct: 328 LP-NTDVISWNTIISGYAQN---GFASEAIE-MYNIMEEEGEIAANQGTWVSVLPACSQA 382

Query: 442 GRWEDVDYLRKLMKDRGVL 460
           G       LR+ MK  G L
Sbjct: 383 GA------LRQGMKLHGRL 395


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 185/487 (37%), Positives = 288/487 (59%), Gaps = 3/487 (0%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +E A  LF  + + D + + TM  G +++   + A+ +F  +   G+  D Y+F S+L A
Sbjct: 228 IEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTA 287

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C  + A  LEEGKQ+H +  +     N++V + L+++Y++C  +  A  +F  ++   ++
Sbjct: 288 CGALAA--LEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNII 345

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+ A+I  Y +++   EA+  F E+Q   +KP D T+ S +SSCA L SL+ G   H   
Sbjct: 346 SWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLA 405

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
              GL +Y+ V+ AL+ ++ KCG ++DA  +FD MS  D  +W+A++  YA  G+  ++I
Sbjct: 406 LVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETI 465

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +FE+M+   + PD +TF+G+L ACS  GLV++G +YF SM+  +GIVP   HY CM+DL
Sbjct: 466 DLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDL 525

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
             R+GR  EA  FI ++P       W TLLSSC    N+ + K   E + E D  +   Y
Sbjct: 526 YSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASY 585

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           V+L ++ A  G+W +V +LR+ M+DR V K PGCS I+  N V  F + D  H +S+ + 
Sbjct: 586 VLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIY 645

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
           + L+ L  ++   GY PD S V H D+ D +K   + +HSEKLAI FGL+  P    IR+
Sbjct: 646 EKLEWLNSKMAEEGYKPDVSSVLH-DVADADKVHMISHHSEKLAIAFGLIFVPQEMPIRI 704

Query: 552 VKNLRVC 558
           VKNLRVC
Sbjct: 705 VKNLRVC 711



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/446 (26%), Positives = 215/446 (48%), Gaps = 52/446 (11%)

Query: 61  NFCTQNPTTSSMEHAHL------LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL 114
           N  T+N   S++ H+ L      LF  +PE D V +N +  G+S + +P R++ L+  LL
Sbjct: 78  NLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALL 137

Query: 115 NS-GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
               + P   +  +++   + +   AL  G  +HC  ++LG  +  +V + L+++YA+  
Sbjct: 138 REESVRPTRITLSAMIMVASALSDRAL--GHSVHCQVLRLGFGAYAFVGSPLVDMYAKMG 195

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPN-------------------------- 207
            +  ARR+F+ +    VV YN +IT   R                               
Sbjct: 196 LIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQ 255

Query: 208 -----EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
                EAL +FR ++   +     T  S L++C  L +L+ GK IH YI +   +  V V
Sbjct: 256 NGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFV 315

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
            +AL+DM++KC  +  A +VF  M+ ++  +W+AMIV Y  +    +++  F EM    +
Sbjct: 316 GSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGI 375

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            PD+ T   ++ +C++   ++EG   F+ +    G++  I     +V L G+ G +++A+
Sbjct: 376 KPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAH 434

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH-----GGDYVILSNL 437
           R  DE+      + W  L+   + +   G AK+ I+ +FE   ++     G  ++ + + 
Sbjct: 435 RLFDEMSFHDQ-VSWTALV---TGYAQFGKAKETID-LFEKMLANGLKPDGVTFIGVLSA 489

Query: 438 CARAGRWED-VDYLRKLMKDRGVLKV 462
           C+RAG  E   DY   + KD G++ +
Sbjct: 490 CSRAGLVEKGCDYFDSMQKDHGIVPI 515



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 138/326 (42%), Gaps = 51/326 (15%)

Query: 136 GAEALEEGKQLHCFAIKLGLNSN-LYVCTTLINLYAECSDVEAARRIFENISEPCV---- 190
           G   +     +HC  +K  L +   ++   L+  YA+   +  ARR+F+ + +P +    
Sbjct: 24  GRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRN 83

Query: 191 ---------------------------VSYNAIITAYARSSRPNEALSLFRE-LQERNLK 222
                                      VSYNA+IT ++ +  P  ++ L+R  L+E +++
Sbjct: 84  ALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVR 143

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
           PT +T+ + +   + L    LG  +H  + + G   Y  V + L+DM+AK G + DA  V
Sbjct: 144 PTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRV 203

Query: 283 FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE---MMKAQVSPDEITFLGLLYACSHT 339
           F  M  K        +V Y T   G     M E+   + +  V  D IT+  ++   +  
Sbjct: 204 FQEMEAK-------TVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQN 256

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHY--GCMVDLLGRAGRLDEA---YRFIDELPIKSTP 394
           GL  E  + F  MR + G+  GI  Y  G ++   G    L+E    + +I     +   
Sbjct: 257 GLQLEALDVFRRMRAE-GV--GIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNV 313

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERI 420
            +   L+   S   ++ LA+ V  R+
Sbjct: 314 FVGSALVDMYSKCRSIRLAEAVFRRM 339



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 93/227 (40%), Gaps = 41/227 (18%)

Query: 26  SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S++  C +   L+   Q H + + + L   + V   L+   T      S+E AH LFD +
Sbjct: 384 SVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALV---TLYGKCGSIEDAHRLFDEM 440

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
              D V +  +  GY++       I LF ++L +GL PD  +F  +L AC+  G   +E+
Sbjct: 441 SFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAG--LVEK 498

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G                  C    ++  +   V            P    Y  +I  Y+R
Sbjct: 499 G------------------CDYFDSMQKDHGIV------------PIDDHYTCMIDLYSR 528

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           S R  EA    +++      P      + LSSC L G++++GKW  E
Sbjct: 529 SGRFKEAEEFIKQMPH---SPDAFGWATLLSSCRLRGNMEIGKWAAE 572


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 195/499 (39%), Positives = 287/499 (57%), Gaps = 50/499 (10%)

Query: 61  NFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP 120
            +C+    T     A  +FD +P  D V FN+M  GY+ S     A  LF  +L     P
Sbjct: 55  GYCSAGRVTD----ARRVFDGMPRRDTVSFNSMIHGYAVSGDVGSAQRLFERVLA----P 106

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
              ++                                     T+++  +    DVE+ARR
Sbjct: 107 TPVTW-------------------------------------TSMVAGFCRAGDVESARR 129

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
           +FE + E  +VS+NA+I+    +  P EAL LFR + E    P   T++S LS+C   G+
Sbjct: 130 VFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGA 189

Query: 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVA 300
           L+ GKW+H +++K  L     + TAL+DM+AKCG ++ A+ VF  +  ++T  W+AMI  
Sbjct: 190 LETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLRARNTCTWNAMING 249

Query: 301 YATHGQGHKSILMFEEM-MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359
            A +G   K++ MF +M +   V+PDE+TF+G+L ACSH G VD G  +FY++  KYG+ 
Sbjct: 250 LAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVE 309

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIER 419
             ++HY CMVDLL R+G L EA++ I E+P+K   ++WR LL  C  H N+ +A+ VI  
Sbjct: 310 LILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNVKMAENVIS- 368

Query: 420 IFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFS 479
             E++ +  GD+V+LSNL A  GRW  V+ +R+ M+ +G+ K+PGCSS+E++  + EF S
Sbjct: 369 --EMEATCSGDHVLLSNLYAAVGRWNGVEDVRRTMRSKGIEKIPGCSSVEMDGSIHEFIS 426

Query: 480 GDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFG 539
           GD  H    D+   L E+   ++  GYV +T+ V + D+EDEEKE AL YHSEKLAI FG
Sbjct: 427 GDKSHPSYDDIHAKLIEIGGRMQQHGYVTETAEVFY-DIEDEEKEQALGYHSEKLAIAFG 485

Query: 540 LLNTPPGTTIRVVKNLRVC 558
           L+  PP  TIR+VKNLR C
Sbjct: 486 LIGGPPEATIRIVKNLRFC 504



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 119/303 (39%), Gaps = 51/303 (16%)

Query: 146 LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSR 205
           LH    KLG           I  Y     V  ARR+F+ +     VS+N++I  YA S  
Sbjct: 33  LHAVCTKLGFLLCTRTNNAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGD 92

Query: 206 PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTA 265
              A  LF    ER L PT VT                  W                 T+
Sbjct: 93  VGSAQRLF----ERVLAPTPVT------------------W-----------------TS 113

Query: 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
           ++    + G ++ A  VF+ M  +D  +W+AMI     +    +++ +F  MM+    P+
Sbjct: 114 MVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVPN 173

Query: 326 EITFLGLLYACSHTGLVDEG-WNYFY--SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
             T + +L AC+  G ++ G W + +    R ++    G      +VD+  + G ++ A 
Sbjct: 174 RGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTA----LVDMYAKCGAVELAL 229

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL---CA 439
                L  ++T   W  +++  + +     A  +  R  EL+ +   D V    +   C+
Sbjct: 230 EVFTGLRARNT-CTWNAMINGLAMNGYSAKALDMF-RQMELNGTVAPDEVTFVGVLLACS 287

Query: 440 RAG 442
            AG
Sbjct: 288 HAG 290


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 183/487 (37%), Positives = 288/487 (59%), Gaps = 3/487 (0%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +E A  LF+ + + D + + TM  G++++    +A+  F  +   G+  D Y+F S+L A
Sbjct: 222 VEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTA 281

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C  +   ALE+GKQ+H + I+   + N++V + L+++Y++C  ++ A   F  +S   ++
Sbjct: 282 CGAL--SALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNII 339

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+ A+I  Y ++    EA+ +F E+Q   + P D T+ S +SSCA L SL+ G   H   
Sbjct: 340 SWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLA 399

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
              GL  Y+ V+ AL+ ++ KCG ++DA  +FD M   D  +W+A++  YA  G+  ++I
Sbjct: 400 LVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETI 459

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +FE+M+   V PD +TF+G+L ACS  G V++G +YF+SM+  +GIVP   HY CM+DL
Sbjct: 460 DLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDL 519

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
             R+GRL EA  FI ++P+    I W TLLS+C    ++ + +   E + E+D  +   Y
Sbjct: 520 YSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASY 579

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           V+L ++ A  G W  V  LR+ M+DR V K PGCS I+  N V  F + D  H +S  + 
Sbjct: 580 VLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSKGIY 639

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
           + L+ L  ++   GY PD S V H D+ D +K   + +HSEKLAI FGL+  P    IR+
Sbjct: 640 EKLEWLNSKMLEEGYKPDVSSVLH-DVADTDKVHMVSHHSEKLAIAFGLMFVPHEMPIRI 698

Query: 552 VKNLRVC 558
           VKNLRVC
Sbjct: 699 VKNLRVC 705



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/491 (25%), Positives = 238/491 (48%), Gaps = 71/491 (14%)

Query: 61  NFCTQNPTTSSMEHAHLL------FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL 114
           N  T N   S++ HA LL      F  + + D V +N +  G+S      RA+ L+  LL
Sbjct: 71  NLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLL 130

Query: 115 NSG--LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE- 171
            +G  + P   +  +++ A + +G  AL  G+Q HC  ++LG   N +V + L+ +YA+ 
Sbjct: 131 RAGSSVRPSRITMSAMVMAASALGDRAL--GRQFHCQILRLGFGVNAFVGSPLVGMYAKM 188

Query: 172 ------------------------------CSDVEAARRIFENISEPCVVSYNAIITAYA 201
                                         C  VE ARR+FE +++   +++  ++T + 
Sbjct: 189 GLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFT 248

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++   ++AL+ FR ++ + +     T  S L++C  L +L+ GK IH YI +   D  V 
Sbjct: 249 QNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVF 308

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V +AL+DM++KC  +  A + F  MS K+  +W+A+IV Y  +G   +++ +F EM +  
Sbjct: 309 VGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDG 368

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY----GCMVDLLGRAGR 377
           + PD+ T   ++ +C++   ++EG  +         +V G+ HY      +V L G+ G 
Sbjct: 369 IDPDDFTLGSVISSCANLASLEEGAQFHC-----LALVSGLMHYITVSNALVTLYGKCGS 423

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI---ERIFELD-DSHGGDYVI 433
           +++A+R  DE+      + W  L+   + +   G AK+ I   E++   D    G  ++ 
Sbjct: 424 IEDAHRLFDEMLFHDQ-VSWTALV---TGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIG 479

Query: 434 LSNLCARAGRWED-VDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
           + + C+RAG  E    Y   + KD G++ +    +  ++           ++S S  L++
Sbjct: 480 VLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMID-----------LYSRSGRLKE 528

Query: 493 ALDELVKELKM 503
           A +E +K++ M
Sbjct: 529 A-EEFIKQMPM 538



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 148/280 (52%), Gaps = 10/280 (3%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  C +   L   KQIHA  I+TH  +++ V + L++  ++     S++ A   F R+
Sbjct: 277 SILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSK---CRSIKPAETAFRRM 333

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
              +I+ +  +  GY ++     A+ +F E+   G+ PDD++  S++ +CA +   +LEE
Sbjct: 334 SCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLA--SLEE 391

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G Q HC A+  GL   + V   L+ LY +C  +E A R+F+ +     VS+ A++T YA+
Sbjct: 392 GAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQ 451

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEYIKKYGLDKYVK 261
             R  E + LF ++  +++KP  VT +  LS+C+  G ++ G  + H   K +G+     
Sbjct: 452 FGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDD 511

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVA 300
             T +ID++++ GRL +A      M    D   W  ++ A
Sbjct: 512 HYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSA 551


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 196/526 (37%), Positives = 299/526 (56%), Gaps = 11/526 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K +H   +K  L  D+ V T L++   +      +E A  +F  +P+P++V++N M  G+
Sbjct: 164 KMLHGCAVKLGLDLDVVVGTALLDTYAK---IGDLEDATKIFKLMPDPNVVMYNAMIAGF 220

Query: 98  SRSKTPI-----RAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
            + +T        A++LF E+ + G+ P +++F S+LKAC+ +  EA E GKQ+H    K
Sbjct: 221 LQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTI--EAFECGKQIHAQIFK 278

Query: 153 LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL 212
             L S+ ++   L+ LY+    +E   + F +  +  VVS+ ++I  + ++ +    L+L
Sbjct: 279 YNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTL 338

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           F EL     KP + T+   LS+CA L ++  G+ IH Y  K G+  +  +  + I M+AK
Sbjct: 339 FHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAK 398

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
           CG +D A   F      D  +WS MI + A HG   +++ +FE M  + ++P+ ITFLG+
Sbjct: 399 CGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGV 458

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L ACSH GLV+EG  YF  M+  +GI P +KH  C+VDLLGRAGRL EA  FI +   + 
Sbjct: 459 LVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEG 518

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452
            P++WR+LLS+C  H      K+V ER+ EL+      YV+L N+   AG       +R 
Sbjct: 519 DPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRN 578

Query: 453 LMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSL 512
           LMKDRGV K PG S IEV NVV  F +GD  H  S  +   L+E+++E+K + Y+ D  L
Sbjct: 579 LMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYI-DEKL 637

Query: 513 VHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           V        +    + YHSEKLA+TFG+++ P    +RV+KNLR C
Sbjct: 638 VSDASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSC 683



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 135/454 (29%), Positives = 229/454 (50%), Gaps = 32/454 (7%)

Query: 23  NALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDR 81
           NALS+  R    R  + IHA+   + L   + +   LI+ +C        ++ A L+F+ 
Sbjct: 46  NALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCK----CGRIDWARLVFES 101

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
             E D V +N++  GY R  +    + L V++L  GL  + Y+  S LKAC    + ++E
Sbjct: 102 ADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIE 161

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            GK LH  A+KLGL+ ++ V T L++ YA+  D+E A +IF+ + +P VV YNA+I  + 
Sbjct: 162 CGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFL 221

Query: 202 RSSR-----PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           +         NEA+ LF E+Q R +KP++ T  S L +C+ + + + GK IH  I KY L
Sbjct: 222 QMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNL 281

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
                +  AL+++++  G ++D +  F +    D  +W+++IV +  +GQ    + +F E
Sbjct: 282 QSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHE 341

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD----LL 372
           ++ +   PDE T   +L AC++   V  G          Y I  GI ++  + +    + 
Sbjct: 342 LLFSGRKPDEFTISIMLSACANLAAVKSG-----EQIHAYAIKTGIGNFTIIQNSQICMY 396

Query: 373 GRAGRLDEAYRFIDELPIKSTPIL-WRTLLSSCSSHNNLGLAKQVIERIFELDDSHG--- 428
            + G +D A     E   K+  I+ W  ++SS + H   G AK+ ++ +FEL    G   
Sbjct: 397 AKCGDIDSANMTFKE--TKNPDIVSWSVMISSNAQH---GCAKEAVD-LFELMKGSGIAP 450

Query: 429 GDYVILSNL--CARAGRWED-VDYLRKLMKDRGV 459
                L  L  C+  G  E+ + Y   + KD G+
Sbjct: 451 NHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGI 484



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 100/201 (49%), Gaps = 1/201 (0%)

Query: 190 VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           VVS+N++I+ Y +    +E ++LF+E +  +L+    T  +ALS C     L LG+ IH 
Sbjct: 6   VVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIHA 65

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
            I   GL   V +  +LIDM+ KCGR+D A  VF++    D+ +W+++I  Y   G   +
Sbjct: 66  LITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDE 125

Query: 310 SILMFEEMMKAQVSPDEITFLGLLYAC-SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
            + +  +M++  ++ +       L AC S+     E     +    K G+   +     +
Sbjct: 126 MLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTAL 185

Query: 369 VDLLGRAGRLDEAYRFIDELP 389
           +D   + G L++A +    +P
Sbjct: 186 LDTYAKIGDLEDATKIFKLMP 206


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 196/526 (37%), Positives = 299/526 (56%), Gaps = 11/526 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K +H   +K  L  D+ V T L++   +      +E A  +F  +P+P++V++N M  G+
Sbjct: 243 KMLHGCAVKLGLDLDVVVGTALLDTYAK---IGDLEDATKIFKLMPDPNVVMYNAMIAGF 299

Query: 98  SRSKTPI-----RAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
            + +T        A++LF E+ + G+ P +++F S+LKAC+ +  EA E GKQ+H    K
Sbjct: 300 LQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTI--EAFECGKQIHAQIFK 357

Query: 153 LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL 212
             L S+ ++   L+ LY+    +E   + F +  +  VVS+ ++I  + ++ +    L+L
Sbjct: 358 YNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTL 417

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           F EL     KP + T+   LS+CA L ++  G+ IH Y  K G+  +  +  + I M+AK
Sbjct: 418 FHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAK 477

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
           CG +D A   F      D  +WS MI + A HG   +++ +FE M  + ++P+ ITFLG+
Sbjct: 478 CGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGV 537

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L ACSH GLV+EG  YF  M+  +GI P +KH  C+VDLLGRAGRL EA  FI +   + 
Sbjct: 538 LVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEG 597

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452
            P++WR+LLS+C  H      K+V ER+ EL+      YV+L N+   AG       +R 
Sbjct: 598 DPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRN 657

Query: 453 LMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSL 512
           LMKDRGV K PG S IEV NVV  F +GD  H  S  +   L+E+++E+K + Y+ D  L
Sbjct: 658 LMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYI-DEKL 716

Query: 513 VHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           V        +    + YHSEKLA+TFG+++ P    +RV+KNLR C
Sbjct: 717 VSDASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSC 762



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 135/454 (29%), Positives = 229/454 (50%), Gaps = 32/454 (7%)

Query: 23  NALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDR 81
           NALS+  R    R  + IHA+   + L   + +   LI+ +C        ++ A L+F+ 
Sbjct: 125 NALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCK----CGRIDWARLVFES 180

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
             E D V +N++  GY R  +    + L V++L  GL  + Y+  S LKAC    + ++E
Sbjct: 181 ADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIE 240

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            GK LH  A+KLGL+ ++ V T L++ YA+  D+E A +IF+ + +P VV YNA+I  + 
Sbjct: 241 CGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFL 300

Query: 202 RSSR-----PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           +         NEA+ LF E+Q R +KP++ T  S L +C+ + + + GK IH  I KY L
Sbjct: 301 QMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNL 360

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
                +  AL+++++  G ++D +  F +    D  +W+++IV +  +GQ    + +F E
Sbjct: 361 QSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHE 420

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD----LL 372
           ++ +   PDE T   +L AC++   V  G          Y I  GI ++  + +    + 
Sbjct: 421 LLFSGRKPDEFTISIMLSACANLAAVKSG-----EQIHAYAIKTGIGNFTIIQNSQICMY 475

Query: 373 GRAGRLDEAYRFIDELPIKSTPIL-WRTLLSSCSSHNNLGLAKQVIERIFELDDSHG--- 428
            + G +D A     E   K+  I+ W  ++SS + H   G AK+ ++ +FEL    G   
Sbjct: 476 AKCGDIDSANMTFKE--TKNPDIVSWSVMISSNAQH---GCAKEAVD-LFELMKGSGIAP 529

Query: 429 GDYVILSNL--CARAGRWED-VDYLRKLMKDRGV 459
                L  L  C+  G  E+ + Y   + KD G+
Sbjct: 530 NHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGI 563



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 173/372 (46%), Gaps = 16/372 (4%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           K  H   IKT  +  L +L  L+  +C    T    + A  LFDR+P+ ++V +N++  G
Sbjct: 39  KLAHMHMIKTCFKPCLFLLNNLLYMYCKCGET----DVAKKLFDRMPKRNVVSWNSLISG 94

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           Y++       + LF E   S L  D ++F + L  C       L  G+ +H      GL 
Sbjct: 95  YTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCG--RTLDLRLGRLIHALITVSGLG 152

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
             + +  +LI++Y +C  ++ AR +FE+  E   VS+N++I  Y R    +E L L  ++
Sbjct: 153 GPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKM 212

Query: 217 QERNLKPTDVTMLSALSSCA--LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
               L      + SAL +C      S++ GK +H    K GLD  V V TAL+D +AK G
Sbjct: 213 LRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIG 272

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ-----GHKSILMFEEMMKAQVSPDEITF 329
            L+DA  +F  M   +   ++AMI  +           ++++ +F EM    + P E TF
Sbjct: 273 DLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTF 332

Query: 330 LGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389
             +L ACS     + G    ++   KY +         +V+L   +G +++  +     P
Sbjct: 333 SSILKACSTIEAFECG-KQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTP 391

Query: 390 IKSTPILWRTLL 401
            K   + W +L+
Sbjct: 392 -KLDVVSWTSLI 402



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 135/274 (49%), Gaps = 3/274 (1%)

Query: 117 GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVE 176
           GL  D  ++  L++     G+  L  GK  H   IK      L++   L+ +Y +C + +
Sbjct: 14  GLPLDSVTYTKLVQCSTRTGS--LIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETD 71

Query: 177 AARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236
            A+++F+ + +  VVS+N++I+ Y +    +E ++LF+E +  +L+    T  +ALS C 
Sbjct: 72  VAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCG 131

Query: 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSA 296
               L LG+ IH  I   GL   V +  +LIDM+ KCGR+D A  VF++    D+ +W++
Sbjct: 132 RTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNS 191

Query: 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC-SHTGLVDEGWNYFYSMRDK 355
           +I  Y   G   + + +  +M++  ++ +       L AC S+     E     +    K
Sbjct: 192 LIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVK 251

Query: 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389
            G+   +     ++D   + G L++A +    +P
Sbjct: 252 LGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMP 285


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 212/559 (37%), Positives = 335/559 (59%), Gaps = 19/559 (3%)

Query: 9   ITQSPPPKLCTNTPNALSLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQ 65
           ++Q P P   T     LS    CT    L Q   +H   I      D  + TKLIN  ++
Sbjct: 70  LSQEPNPTQHTYELLILS----CTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSE 125

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSF 125
                S+++A  +FD+  +  I ++N + R  + +      + L+  +   G+  D +++
Sbjct: 126 ---LDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTY 182

Query: 126 PSLLKACACVGAEA----LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRI 181
             +LKAC  V +EA    L  G+++H   ++ G   ++++ TTL+++YA    V  A R+
Sbjct: 183 TYVLKAC--VASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRV 240

Query: 182 FENISEPCVVSYNAIITAYARSSRPNEALSLFRE--LQERNLKPTDVTMLSALSSCALLG 239
           F+ +    VVS++A+I  Y+++ +P EAL LFR+  L+ ++L P  VTM+S L +CA L 
Sbjct: 241 FDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALA 300

Query: 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIV 299
           +L+ GK +H YI + GLD  + V +AL+ ++A+CG L+    VF+ M  +D  +W+++I 
Sbjct: 301 ALEQGKLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLIS 360

Query: 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359
           +Y  HG G K+I +F+EM+   +SP  I+F+ +L ACSH GLV+EG   F SM   + I 
Sbjct: 361 SYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIF 420

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIER 419
           P ++HY CMVDLLGRA RLDEA + ID++ I+  P +W +LL SC  H N+ LA++   R
Sbjct: 421 PSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGPKVWGSLLGSCRIHCNVELAERATSR 480

Query: 420 IFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFS 479
           +FEL+ ++ G+YV+L+++ A A  W +V  ++ L++ RG+ KVPG S IE+   +  F S
Sbjct: 481 LFELEPTNAGNYVLLADIYAEAKMWNEVKRVKMLLEARGLQKVPGRSCIEIRRKIYSFMS 540

Query: 480 GDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFG 539
            D  +     L   L +L  E+K  GYVPDT +V + D++ EEKE  +  HSEKLA+ FG
Sbjct: 541 VDEFNPQIEQLHALLLKLSMEMKEKGYVPDTKVVLY-DLDPEEKERIVLGHSEKLALAFG 599

Query: 540 LLNTPPGTTIRVVKNLRVC 558
           L+N+  G TIR+ KNLR+C
Sbjct: 600 LINSKKGETIRITKNLRLC 618



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 11/219 (5%)

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           N +I +  +    N+AL +    QE N  PT  T    + SC    SL  G  +H ++  
Sbjct: 51  NPLIQSLCKQGNLNQALQVLS--QEPN--PTQHTYELLILSCTRQNSLPQGIDLHRHLIH 106

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
            G D+   + T LI+M+++   +D+A  VFD    +    W+A+  A    G G + + +
Sbjct: 107 DGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDL 166

Query: 314 FEEMMKAQVSPDEITFLGLLYAC----SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369
           +  M +  V  D  T+  +L AC    +   L+  G    +    ++G    +     ++
Sbjct: 167 YRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNG-REIHGHILRHGFEGHVHIMTTLL 225

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408
           D+  R G +  A R  D++P+K+  + W  ++ +C S N
Sbjct: 226 DMYARFGCVLNASRVFDQMPVKNV-VSWSAMI-ACYSKN 262


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 216/597 (36%), Positives = 324/597 (54%), Gaps = 65/597 (10%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           LSLL  C + R L QIH + IK  +  D     KLI  C  +  + ++ +A  L    PE
Sbjct: 1   LSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAIS-ISDALPYARRLLLCFPE 59

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLL-PDDYSFPSL---------LKACAC 134
           PD  +FNT+ RGYS S  P  ++ +FVE++  G + PD +SF  +         L+    
Sbjct: 60  PDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQ 119

Query: 135 VGAEALEEGKQLHC-----------------FAIKL----------GLNSNLYVC----- 162
           +  +AL+ G + H                  FA K+            N+ +  C     
Sbjct: 120 MHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGND 179

Query: 163 -------------------TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
                                ++  Y +  ++E+A+RIF  +     VS++ +I   A +
Sbjct: 180 VAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHN 239

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
              NE+   FRELQ   + P +V++   LS+C+  GS + GK +H +++K G    V VN
Sbjct: 240 GSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVN 299

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKD-TQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
            ALIDM+++CG +  A  VF+ M  K    +W++MI   A HGQG +++ +F EM    V
Sbjct: 300 NALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGV 359

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
           +PD I+F+ LL+ACSH GL++EG +YF  M+  Y I P I+HYGCMVDL GR+G+L +AY
Sbjct: 360 TPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAY 419

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
            FI ++PI  T I+WRTLL +CSSH N+ LA+QV +R+ ELD ++ GD V+LSN  A AG
Sbjct: 420 DFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAG 479

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           +W+DV  +RK M  + + K    S +EV   + +F +G+       +  + L E++  LK
Sbjct: 480 KWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLK 539

Query: 503 -MVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
              GY P+ +   + D+E+EEKE  +  HSEKLA+ F L     G  IR+VKNLR+C
Sbjct: 540 DEAGYTPEVASALY-DVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRIC 595


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  360 bits (925), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 216/599 (36%), Positives = 325/599 (54%), Gaps = 65/599 (10%)

Query: 23  NALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           + LSLL  C + R L QIH + IK  +  D     KLI  C  +  + ++ +A  L    
Sbjct: 7   HCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAIS-ISDALPYARRLLLCF 65

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLL-PDDYSFPSL---------LKAC 132
           PEPD  +FNT+ RGYS S  P  ++ +FVE++  G + PD +SF  +         L+  
Sbjct: 66  PEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTG 125

Query: 133 ACVGAEALEEGKQLHC-----------------FAIKL----------GLNSNLYVC--- 162
             +  +AL+ G + H                  FA K+            N+ +  C   
Sbjct: 126 FQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRG 185

Query: 163 ---------------------TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
                                  ++  Y +  ++E+A+RIF  +     VS++ +I   A
Sbjct: 186 NDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIA 245

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
            +   NE+   FRELQ   + P +V++   LS+C+  GS + GK +H +++K G    V 
Sbjct: 246 HNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVS 305

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKD-TQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
           VN ALIDM+++CG +  A  VF+ M  K    +W++MI   A HGQG +++ +F EM   
Sbjct: 306 VNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAY 365

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
            V+PD I+F+ LL+ACSH GL++EG +YF  M+  Y I P I+HYGCMVDL GR+G+L +
Sbjct: 366 GVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQK 425

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           AY FI ++PI  T I+WRTLL +CSSH N+ LA+QV +R+ ELD ++ GD V+LSN  A 
Sbjct: 426 AYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYAT 485

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
           AG+W+DV  +RK M  + + K    S +EV   + +F +G+       +  + L E++  
Sbjct: 486 AGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILR 545

Query: 501 LK-MVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           LK   GY P+ +   + D+E+EEKE  +  HSEKLA+ F L     G  IR+VKNLR+C
Sbjct: 546 LKDEAGYTPEVASALY-DVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRIC 603


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 197/538 (36%), Positives = 307/538 (57%), Gaps = 48/538 (8%)

Query: 27  LLPRCTSFRGLK---QIHAVTIKTHLQNDL---NVLTKLINFCTQNPTTSSMEHAHLLFD 80
           +L  C+    L+   Q+H   +K  L  +L   N L  +   C        +  A  + D
Sbjct: 143 VLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKC------GCLREARKVLD 196

Query: 81  RIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEAL 140
           ++P  D+V +N+M  GY++S                G   D                 AL
Sbjct: 197 QMPYRDVVSWNSMVAGYAQS----------------GQFDD-----------------AL 223

Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY 200
           E  K++   ++ L  ++      + +  Y    +V+    +FE +++  ++S+N +I  Y
Sbjct: 224 EICKEMD--SLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIY 281

Query: 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
             +S PNEA+SLF +++E  +KP  VT+ S L +C  L +L LG+ +H+YI+K  L   +
Sbjct: 282 VNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNL 341

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            +  AL+DM+AKCG L++A  VFD M  +D  +W++M+ AY   GQG+ ++ +F +M+ +
Sbjct: 342 LLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDS 401

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
             +PD I F+ +L ACSHTGL+D+G +YF  M ++YGIVP I+H+ CMVDL GRAG ++E
Sbjct: 402 GQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEE 461

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           AY FI ++P++    +W  LLS+C  H+ + +     + +F+L     G YV+LSN+ A+
Sbjct: 462 AYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAK 521

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
           AG W+DV  +R  MK  G+ KVPG S++E+N  V  F +GD  H  + ++   LD LV +
Sbjct: 522 AGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGK 581

Query: 501 LKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +K +GY+P T    H D+E E+KE  L  HSEKLAI F +LNT  GT IR+ KNLRVC
Sbjct: 582 MKELGYIPQTESALH-DVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVC 638



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 187/378 (49%), Gaps = 41/378 (10%)

Query: 27  LLPRCTSFRGLKQIHA-VTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP 85
           +L +    + L ++H+ + I  HL+ D  +  KL+   +    TS    A  +FDR  E 
Sbjct: 44  ILDQYPGIKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSV---ARYIFDRSLEK 100

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
           ++V FN M R Y  +   + A+ +F  +L+    PD Y+FP +LKAC+  G + L  G Q
Sbjct: 101 NVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACS--GLDNLRVGLQ 158

Query: 146 LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSR 205
           +H   +K+GL++NL++   L+ +Y +C  +  AR++ + +    VVS+N+++  YA+S +
Sbjct: 159 VHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQ 218

Query: 206 PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTA 265
            ++AL + +E+   NL   D   +++LS      SL+  ++IH                 
Sbjct: 219 FDDALEICKEMDSLNLN-HDAGTMASLSPVVCYTSLENVQYIH----------------- 260

Query: 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
                          ++F+ M+ K+  +W+ MI  Y  +   ++++ +F +M +  + PD
Sbjct: 261 ---------------NMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPD 305

Query: 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI 385
            +T   LL AC     +  G    +   +K  + P +     ++D+  + G L+EA    
Sbjct: 306 AVTIASLLPACGDLSALFLG-RRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVF 364

Query: 386 DELPIKSTPILWRTLLSS 403
           D++ ++   + W +++S+
Sbjct: 365 DKMRLRDV-VSWTSMMSA 381



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 133/280 (47%), Gaps = 10/280 (3%)

Query: 144 KQLHCFAIKLGLNSNLYVCTTL----INLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
           K L+    K+ +N +L +  TL    +  Y+   +   AR IF+   E  VV +N +I +
Sbjct: 52  KTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRS 111

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
           Y  ++   EALS+F+ +      P   T    L +C+ L +L +G  +H+ I K GLD  
Sbjct: 112 YVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTN 171

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           + +  AL+ M+ KCG L +A  V D M  +D  +W++M+  YA  GQ   ++ + +EM  
Sbjct: 172 LFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDS 231

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
             ++ D  T   L     +T L  E   Y ++M ++      +  +  M+ +       +
Sbjct: 232 LNLNHDAGTMASLSPVVCYTSL--ENVQYIHNMFERM-TKKNLISWNVMIAIYVNNSMPN 288

Query: 380 EAYRF---IDELPIKSTPILWRTLLSSCSSHNNLGLAKQV 416
           EA      ++E  +K   +   +LL +C   + L L +++
Sbjct: 289 EAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRL 328


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 199/524 (37%), Positives = 304/524 (58%), Gaps = 9/524 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K++H+  I++ L  DL V   L++   +      ++ A  +FD + E +++ +  +  GY
Sbjct: 282 KELHSWVIRSGLVLDLCVGCSLVDMYAK---CGLVQEARKVFDGMREHNVMSWTALVNGY 338

Query: 98  SRSKTPIR--AIFLFVE-LLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
            R        A+ +F   LL  G+ P+ ++F  +LKACA +     + G+Q+H   IKLG
Sbjct: 339 VRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASL--PDFDFGEQVHGQTIKLG 396

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           L++   V   L+++YA+   +E+AR+ F+ + E  +VS   +     +    N    L R
Sbjct: 397 LSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLDR 456

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
           E++      +  T  S LS  A +G++  G+ IH  + K G    + VN ALI M++KCG
Sbjct: 457 EVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCG 516

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
             + A+ VF++M   +   W+++I  +A HG   K++ +F  M++  V P+++T++ +L 
Sbjct: 517 NKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLS 576

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           ACSH GL+DE W +F SMRD +GIVP ++HY CMVDLLGR+G L EA  FI+ +P  +  
Sbjct: 577 ACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFDADA 636

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454
           ++WRT L SC  H N  L +   + I E +      Y++LSNL A  GRWEDV  +RK M
Sbjct: 637 LVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPATYILLSNLYATEGRWEDVAAIRKNM 696

Query: 455 KDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVH 514
           K + + K  G S IEV N V +F  GD +H  +  + + LDEL  ++K VGYVP+T  V 
Sbjct: 697 KQKQITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIYEKLDELALKIKNVGYVPNTDFVL 756

Query: 515 HGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           H D+EDE+KE  L  HSEKLA+ F L++TP    IRV KNLRVC
Sbjct: 757 H-DVEDEQKEQYLFQHSEKLAVAFALISTPNPKPIRVFKNLRVC 799



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 199/385 (51%), Gaps = 38/385 (9%)

Query: 27  LLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQ--NPTTS-----SMEHAH 76
           LL +C   +     K +H     ++L  D  +L  LI   ++  +P T+     SME++ 
Sbjct: 58  LLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSMENS- 116

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL-NSGLLPDDYSFPSLLKACACV 135
                  + D+V ++++   ++ ++  ++A+ +F +LL   G+ P++Y F ++++AC   
Sbjct: 117 -------KRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKG 169

Query: 136 GAEALEEGKQLHCFAIKLG-LNSNLYVCTTLINLYAE-CS--DVEAARRIFENISEPCVV 191
           G    + G  L  F +K G  +S++ V   LI+++ + CS  D+E+AR++F+ + E  VV
Sbjct: 170 GF--FKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVV 227

Query: 192 SYNAIITAYARSSRPNEALSLFRE-LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY 250
           ++  +IT  A+    +EA+ LF E L      P   T+   +S CA +  L LGK +H +
Sbjct: 228 TWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSW 287

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH-- 308
           + + GL   + V  +L+DM+AKCG + +A  VFD M   +  +W+A++  Y   G G+  
Sbjct: 288 VIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYER 347

Query: 309 KSILMFEEM-MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367
           +++ MF  M ++  V+P+  TF G+L AC+     D     F        I  G+    C
Sbjct: 348 EAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFD-----FGEQVHGQTIKLGLSAIDC 402

Query: 368 ----MVDLLGRAGRLDEAYRFIDEL 388
               +V +  ++GR++ A +  D L
Sbjct: 403 VGNGLVSVYAKSGRMESARKCFDVL 427



 Score = 45.4 bits (106), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 104/236 (44%), Gaps = 19/236 (8%)

Query: 207 NEALSLFRELQERNLKPTDVTMLSALSSCALL-------GSLDLGKWIHEYIKKYGLDKY 259
           N    L + +   NL  T+ T  + L + +LL        +  LGK +H  +    L   
Sbjct: 27  NNPQQLHKAITTLNLTDTESTHNNKLITSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLD 86

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNM--SGKDTQAWSAMIVAYATHGQGHKSILMFEE- 316
             +  +LI +++K      A S+F +M  S +D  ++S++I  +A +    K++ MF++ 
Sbjct: 87  TLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQL 146

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC-MVDLLGRA 375
           +++  V P+E  F  ++ AC   G    G   F     K G        GC ++D+  + 
Sbjct: 147 LLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLF-GFVLKTGYFDSHVCVGCELIDMFVKG 205

Query: 376 ---GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428
                L+ A +  D++  K+  + W  +++  + +   G   + I+   E+  S G
Sbjct: 206 CSLADLESARKVFDKMREKNV-VTWTLMITRLAQY---GYNDEAIDLFLEMLVSSG 257


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 193/554 (34%), Positives = 315/554 (56%), Gaps = 10/554 (1%)

Query: 9   ITQSPPPKLCTNTPNALSLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQ 65
           + Q     +  N+   +S+LP       L Q   IHA  I+    +++ + T L++   +
Sbjct: 198 VAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAK 257

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN-SGLLPDDYS 124
                 + +A  +F+ + + + V ++ M  GY    +   A+ L+ ++L   GL P   +
Sbjct: 258 ---CHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPAT 314

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
             ++L+ACA +    L+ GK+LHC  IK G++ +  V  +LI++YA+C  ++ A    + 
Sbjct: 315 LATMLRACAQL--TDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDE 372

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
           +     VSY+AII+   ++    +AL +FR++Q   + P   TM++ L +C+ L +L  G
Sbjct: 373 MIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHG 432

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
              H Y    G      +  A+IDM++KCG++  +  +FD M  +D  +W+ MI+ Y  H
Sbjct: 433 TCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIH 492

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364
           G   +++ +F+E+    + PD++T + +L ACSH+GLV EG  +F SM   + I P + H
Sbjct: 493 GLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAH 552

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
           Y CMVDLL RAG LDEAY FI  +P      +W  LL++C +H N+ + +QV ++I  L 
Sbjct: 553 YICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLG 612

Query: 425 DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVH 484
               G++V++SN+ +  GRW+D  Y+R + +  G  K PGCS +E++ V+  F  G   H
Sbjct: 613 PEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQSH 672

Query: 485 SYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTP 544
             S  + K L EL+ ++K +GY  D+S V H D+E+EEKE  L YHSEK+AI FG+LNT 
Sbjct: 673 PQSASINKKLQELLVQMKKLGYRADSSFVLH-DVEEEEKEQILLYHSEKVAIAFGILNTS 731

Query: 545 PGTTIRVVKNLRVC 558
           P + I V KNLR+C
Sbjct: 732 PSSRILVTKNLRIC 745



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 187/334 (55%), Gaps = 9/334 (2%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +FD+IP+P +VL+N M R Y+ S    ++I+L++ +L  G+ P +++FP LLKAC+ 
Sbjct: 60  ARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSS 119

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS--EPCVVS 192
           +  +AL+ G+ +H  A  LGL+ +LYV T L+++YA+C  +  A+ +F +IS  +  +V+
Sbjct: 120 L--QALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVA 177

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY-I 251
           +NA+I A++  +   + +    ++Q+  + P   T++S L +     +L  GK IH Y I
Sbjct: 178 WNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYI 237

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
           + +  D  V + TAL+DM+AKC  L  A  +F+ ++ K+   WSAMI  Y  H     ++
Sbjct: 238 RNFFFDNVV-LQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDAL 296

Query: 312 LMFEEMMKAQ-VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370
            ++++M+    ++P   T   +L AC+    +  G    +    K G+         ++ 
Sbjct: 297 ALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRG-KKLHCHMIKSGMDLDTTVGNSLIS 355

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSC 404
           +  + G +D A  F+DE+  K T + +  ++S C
Sbjct: 356 MYAKCGIMDNAVGFLDEMIAKDT-VSYSAIISGC 388



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 103/185 (55%), Gaps = 2/185 (1%)

Query: 163 TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK 222
           T L   +   ++++ AR +F+ I +P VV +N +I  YA S    +++ L+  + +  + 
Sbjct: 45  TQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVT 104

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
           PT+ T    L +C+ L +L LG+ IH +    GL   + V+TAL+ M+AKCG L  A ++
Sbjct: 105 PTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTL 164

Query: 283 FDNMS--GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG 340
           F+++S   +D  AW+AMI A++ H    ++I    +M +A V+P+  T + +L       
Sbjct: 165 FNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQAN 224

Query: 341 LVDEG 345
            + +G
Sbjct: 225 ALHQG 229


>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
          Length = 611

 Score =  360 bits (924), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 179/423 (42%), Positives = 265/423 (62%), Gaps = 4/423 (0%)

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
           +L   +QLH   +  G   +  + T+L+  YA   D + AR++F+ +     V++N +IT
Sbjct: 150 SLAHARQLHANVVAEGHLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLIT 209

Query: 199 AYARSSRPNEALSLFRELQERNLK--PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
            YAR+ R  +AL LF E++ ++ +  P DVT +  L +C+ LG+LD G+ +  Y +++G 
Sbjct: 210 CYARNRRTKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGY 269

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
              +KV  +LI M+ +CG +D A  VF     K    W+AMI   A +G G+ +I +FEE
Sbjct: 270 GGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEE 329

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M+++ V+PDE TF G+L ACSH+GLVDEG+ +F  MR +YG+ P ++HYGC+VDL+GRAG
Sbjct: 330 MIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAG 389

Query: 377 RLDEAYRFI-DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
            LDEAY F+ +E+ +     +WRTLL +C  H ++ L ++VI  + EL     GDYV+L 
Sbjct: 390 LLDEAYEFVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLLL 449

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           N  A  G W  V  +RKLM++ G+   PGC+++E N  V EF + D  H    ++ + L 
Sbjct: 450 NTYAAVGEWSKVSEIRKLMQEEGIQTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENLS 509

Query: 496 ELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNL 555
           E+ K+L++ GYVP+ S   H D++ E KE AL YHSEKLAI F LL TP    IR+ KNL
Sbjct: 510 EIYKQLRIAGYVPNVSSELH-DLDSEGKESALTYHSEKLAIAFALLVTPQHRPIRLAKNL 568

Query: 556 RVC 558
           RVC
Sbjct: 569 RVC 571



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 163/330 (49%), Gaps = 17/330 (5%)

Query: 24  ALSLLPRCTSFRGLKQIHA-VTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           A+ L PRC S    +Q+HA V  + HL++ L + T L+  C  N      + A  LFD +
Sbjct: 142 AILLKPRC-SLAHARQLHANVVAEGHLRDAL-LATSLMR-CYAN--RGDGDGARKLFDEM 196

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELL--NSGLLPDDYSFPSLLKACACVGAEAL 140
           P  D V +N +   Y+R++    A+ LF E+   +S   PDD +   LL+AC+ +GA  L
Sbjct: 197 PVRDAVAWNVLITCYARNRRTKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGA--L 254

Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY 200
           + G+Q+  +A + G    L V  +LI +Y  C  V+ A R+F    +  VV++ A+I+  
Sbjct: 255 DFGEQVWAYAEEHGYGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGL 314

Query: 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK-KYGLDKY 259
           A +   N+A+S+F E+   ++ P + T    LS+C+  G +D G    + ++ +YGL   
Sbjct: 315 AANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPN 374

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDN--MSGKDTQAWSAMIVAYATHGQ---GHKSILMF 314
           V+    ++D+  + G LD+A     N      D   W  ++ A   HG    G + I   
Sbjct: 375 VRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVIGNL 434

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDE 344
            E +KAQ + D +  L    A      V E
Sbjct: 435 IE-LKAQQAGDYVLLLNTYAAVGEWSKVSE 463


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 196/533 (36%), Positives = 307/533 (57%), Gaps = 11/533 (2%)

Query: 28   LPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDI 87
            L R    +  + +H   I+  +  +L+ L   +        T ++   H +F+ I E  I
Sbjct: 509  LGRLGRVKEGRSVHGFVIRRAMDPELDFLGPAL--MELYADTGNLRDCHKVFETIKEKTI 566

Query: 88   VLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLH 147
            + +NT+   ++R+  P  A+ LFV++   GL+PD YS  S L AC  +    L  G Q+H
Sbjct: 567  LSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQL--GAQIH 624

Query: 148  CFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPN 207
             + IK G N N +V   LI++YA+C  V +A ++FE I E  +V++N++I  ++++    
Sbjct: 625  GYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSV 683

Query: 208  EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267
            EA++LF ++    +K   +T LS + +C+ LG L+ GKW+H  +  YGL K   ++TAL 
Sbjct: 684  EAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALT 743

Query: 268  DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
            DM++KCG L  A  VFD MS +   +WS MI  Y  HGQ + +I +F +M+ + + P++I
Sbjct: 744  DMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDI 803

Query: 328  TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
            TF+ +L ACSH G V+EG  YF SM + +G+ P   H+ CMVDLL RAG L+ AY+ I  
Sbjct: 804  TFMHILSACSHAGAVEEGKLYFNSMSE-FGVEPKHDHFACMVDLLSRAGDLNGAYQIITS 862

Query: 388  LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447
            LP  +   +W  LL+ C  H  + + K + + + ++D +  G Y +LSN+ A  G W+  
Sbjct: 863  LPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKF 922

Query: 448  DYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGY- 506
              +R +MK +G+ KVPG S+IE++  +  F  GD  HS + D+ + L+     +    Y 
Sbjct: 923  GKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYD 982

Query: 507  -VPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
              PD S+V       E   ++   HSEKLAI FG++NT PGTT+R+ KNLRVC
Sbjct: 983  SEPDNSIVGTSKFNKENNVVS---HSEKLAIAFGIINTRPGTTLRISKNLRVC 1032



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/462 (24%), Positives = 211/462 (45%), Gaps = 63/462 (13%)

Query: 5   PSPPITQSPPPKLC---TNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLIN 61
           P  P  ++     C    N+  +L+   RC +   L Q+HA    T L       TKLI 
Sbjct: 329 PGDPPGEASAEYACFFTLNSSRSLTSHKRCATSTTLTQLHAHLFITGLHRHPPASTKLIE 388

Query: 62  FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY------------------------ 97
              Q       E +  +FD  P+PD  ++  + + Y                        
Sbjct: 389 SYAQ---IGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQI 445

Query: 98  ---------------------SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
                                 ++      + +F ++++  + PD  +  S+ +AC+ +G
Sbjct: 446 SNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELG 505

Query: 137 AEAL------EEGKQLHCFAIKLGLNSNL-YVCTTLINLYAECSDVEAARRIFENISEPC 189
           +  L      +EG+ +H F I+  ++  L ++   L+ LYA+  ++    ++FE I E  
Sbjct: 506 SLRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKT 565

Query: 190 VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           ++S+N +I+ + R+ +P EAL LF ++Q + L P   ++ S+LS+C  +    LG  IH 
Sbjct: 566 ILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHG 625

Query: 250 YIKKYG-LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
           YI K G  + +V+   ALIDM+AKCG +  A  +F+ +  K    W++MI  ++ +G   
Sbjct: 626 YIIKTGNFNDFVQ--NALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSV 683

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
           ++I +F++M    V  D++TFL ++ ACSH G +++G  + +     YG+         +
Sbjct: 684 EAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKG-KWVHHKLIMYGLRKDSYLDTAL 742

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
            D+  + G L  A+   D +  +S  + W  +++    H  +
Sbjct: 743 TDMYSKCGELQMAHGVFDRMSERSI-VSWSVMIAGYGMHGQI 783


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 216/592 (36%), Positives = 314/592 (53%), Gaps = 75/592 (12%)

Query: 39  QIHAVTIKTHLQN-DLNVLTKLINFCTQNPTT-----SSMEHAHLLFDRIPEPDIVLFNT 92
           Q+H   +KT +     +VL  L++   +  +      S+M  A  LFD +P+ D + + T
Sbjct: 169 QMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTT 228

Query: 93  MARGYSRSK--TPIRAIF-LFVELLNS----------------------------GLLPD 121
           M  GY R+      R +F   VE L +                            G+  D
Sbjct: 229 MITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFD 288

Query: 122 DYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN----LYVCTTLINLYAECSDVEA 177
           D ++ +++ ACA VG+   + GKQ+H + +K  LN N    L V   LI LY + + V+ 
Sbjct: 289 DITYTTIISACANVGS--FQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDE 346

Query: 178 ARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNL---------------- 221
           AR+IF  +    ++++NAI++ Y  + R  EA S F E+  +NL                
Sbjct: 347 ARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFG 406

Query: 222 ---------------KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
                          +P D     AL++C++LG+L+ G+ +H  +   G +  + V  A+
Sbjct: 407 DEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAM 466

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           I M+AKCG ++ A SVF  M   D  +W++MI A   HG G K+I +F++M+K  V PD 
Sbjct: 467 ISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDR 526

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
           ITFL +L ACSH GLV++G +YF SM + YGI P   HY  MVDL  RAG    A   ID
Sbjct: 527 ITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVID 586

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWED 446
            +P K    +W  LL+ C  H N+ L  +  E++F+L   + G YV+LSN+ A  GRW D
Sbjct: 587 SMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWND 646

Query: 447 VDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGY 506
           V  +RKLM+D+ V K P CS IEV N V  F   D VH     + + L++L  E+K +GY
Sbjct: 647 VAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGY 706

Query: 507 VPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +PDT  V H DME E+KE AL  HSEKLA+ FG++  PP  T+RV KN+R+C
Sbjct: 707 IPDTKFVLH-DMEYEQKEHALSTHSEKLAVGFGIMKLPPDATVRVFKNIRIC 757



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/401 (25%), Positives = 170/401 (42%), Gaps = 89/401 (22%)

Query: 32  TSFRGLKQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPDI--- 87
            SF   + +HA  I +  +   + L +L+  +C     +S++ +A  LF+ IP PD    
Sbjct: 27  ASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCK----SSNVVYARQLFEEIPNPDAIAR 82

Query: 88  ------------------------------VLFNTMARGYSRSKTPIRAIFLFVELLNSG 117
                                         V +N M  GY+ +     A+ LF  +    
Sbjct: 83  TTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDD 142

Query: 118 LLPDDYSFPSLLKACAC-VGAEALEEGKQLHCFAIKLG--------LNSNLYV------- 161
             PDD++F S+L A    VG E  ++  Q+HC  +K G        LN+ L V       
Sbjct: 143 FRPDDFTFTSVLSALVLFVGNE--QQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASE 200

Query: 162 -------------------------CTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
                                     TT+I  Y    D+  AR +FE + E    ++NA+
Sbjct: 201 LGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAM 260

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           I+ Y       EAL+L R+++   ++  D+T  + +S+CA +GS  +GK +H YI K  L
Sbjct: 261 ISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNEL 320

Query: 257 DKY----VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           +      + V+ ALI ++ K  ++D+A  +F  M  ++   W+A++  Y   G+  ++  
Sbjct: 321 NPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKS 380

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
            FEEM    +    +T   ++   +  G  DEG   F  MR
Sbjct: 381 FFEEMPVKNL----LTLTVMISGLAQNGFGDEGLKLFKQMR 417



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 155/405 (38%), Gaps = 96/405 (23%)

Query: 163 TTLINLYAECSDVEAARRIFEN--ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN 220
           TTLI  Y    ++E  R IF    +     V YNA+IT YA +   + AL LFR ++  +
Sbjct: 83  TTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDD 142

Query: 221 LKPTDVTMLSALSSCAL-LGSLDLGKWIHEYIKKYGLD-KYVKVNTALIDMHAK------ 272
            +P D T  S LS+  L +G+      +H  + K G+      V  AL+ ++ K      
Sbjct: 143 FRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELG 202

Query: 273 --CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK-------AQVS 323
             C  +  A  +FD M  +D   W+ MI  Y  +   + +  +FE M++       A +S
Sbjct: 203 IPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMIS 262

Query: 324 P------------------------DEITFLGLLYACSHTG------------------- 340
                                    D+IT+  ++ AC++ G                   
Sbjct: 263 GYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNP 322

Query: 341 --------------------LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
                                VDE    FY+M      V  I  +  ++     AGR++E
Sbjct: 323 NHSFCLSVSNALITLYCKNNKVDEARKIFYAMP-----VRNIITWNAILSGYVNAGRMEE 377

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL--C 438
           A  F +E+P+K+  +L  T++ S  + N  G     + +   LD     D+     L  C
Sbjct: 378 AKSFFEEMPVKN--LLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTAC 435

Query: 439 ARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGV 483
           +  G  E+   L   +   G       SS+ V N +   ++  GV
Sbjct: 436 SVLGALENGRQLHAQLVHLGYE-----SSLSVGNAMISMYAKCGV 475


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 190/525 (36%), Positives = 316/525 (60%), Gaps = 11/525 (2%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLIN--FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMA 94
           LK++H  ++K        V  +L+   F        S+ +A  +F  I    +  +N + 
Sbjct: 164 LKELHCYSLKQEF-----VYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALI 218

Query: 95  RGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
            G+++S  P  ++   +++  SGLLPD ++  SLL AC+ +  ++L  GK++H F I+  
Sbjct: 219 GGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKL--KSLRLGKEVHGFIIRNW 276

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           L  +L+V  ++++LY  C ++   + +F+ + +  +VS+N +IT Y ++  P+ AL +FR
Sbjct: 277 LERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFR 336

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
           ++    ++   ++M+    +C+LL SL LG+  H Y  K+ L+    +  +LIDM+AK G
Sbjct: 337 QMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNG 396

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
            +  +  VF+ +  K T +W+AMI+ Y  HG   ++I +FEEM +   +PD++TFLG+L 
Sbjct: 397 SITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLT 456

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI-DELPIKST 393
           AC+H+GL+ EG  Y   M+  +G+ P +KHY C++D+LGRAG+LD+A R + +E+  ++ 
Sbjct: 457 ACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEAD 516

Query: 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKL 453
             +W++LLSSC  H NL + ++V  ++FEL+     +YV+LSNL A  G+WEDV  +R+ 
Sbjct: 517 VGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQR 576

Query: 454 MKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLV 513
           M +  + K  GCS IE+N  V  F  G+       +++     L  ++  +GY PDT  V
Sbjct: 577 MNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSV 636

Query: 514 HHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            H D+ +EEK   LR HSEKLA+T+GL+ T  GTTIRV KNLR+C
Sbjct: 637 QH-DLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRIC 680



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 190/403 (47%), Gaps = 16/403 (3%)

Query: 25  LSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           +++LP C   R +   K +H   +K  L  +L +   L++  ++      + +A ++F  
Sbjct: 46  VTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSK---CGCITNAQMIFKM 102

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
               ++V +NTM  G+S          +  ++L  G          L     C     L 
Sbjct: 103 NNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLP 162

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
             K+LHC+++K     N  V    +  YA+C  +  A+R+F  I    V S+NA+I  +A
Sbjct: 163 SLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHA 222

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           +S+ P  +L    +++   L P   T+ S LS+C+ L SL LGK +H +I +  L++ + 
Sbjct: 223 QSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLF 282

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V  +++ ++  CG L    ++FD M  K   +W+ +I  Y  +G   +++ +F +M+   
Sbjct: 283 VYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYG 342

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGC-MVDLLGRAGRLD 379
           +    I+ + +  ACS    +  G   + Y+++    ++       C ++D+  + G + 
Sbjct: 343 IQLCGISMMPVFGACSLLPSLRLGREAHAYALKH---LLEDDAFIACSLIDMYAKNGSIT 399

Query: 380 EAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
           ++ +  + L  KST   W  ++     H   GLAK+ I ++FE
Sbjct: 400 QSSKVFNGLKEKSTAS-WNAMIMGYGIH---GLAKEAI-KLFE 437



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 122/258 (47%), Gaps = 8/258 (3%)

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELL----NSGLLPDDYSFPSLLKACACVGAEALE 141
           + V +N+M R +S +     +  L  E++    +   +PD  +  ++L  CA      + 
Sbjct: 2   NFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCA--REREIG 59

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            GK +H +A+KL L+  L +   L+++Y++C  +  A+ IF+  +   VVS+N ++  ++
Sbjct: 60  LGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFS 119

Query: 202 RSSRPNEALSLFRELQE--RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
                +    + R++     ++K  +VT+L+A+  C     L   K +H Y  K      
Sbjct: 120 AEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYN 179

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
             V  A +  +AKCG L  A  VF  +  K   +W+A+I  +A       S+    +M  
Sbjct: 180 ELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKI 239

Query: 320 AQVSPDEITFLGLLYACS 337
           + + PD  T   LL ACS
Sbjct: 240 SGLLPDSFTVCSLLSACS 257



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 81/158 (51%), Gaps = 6/158 (3%)

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERN----LKPTDVTMLSALSSCALLGSLDLGKW 246
           VS+N++I  ++ +    E+  L  E+ E N      P   T+++ L  CA    + LGK 
Sbjct: 4   VSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKG 63

Query: 247 IHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ 306
           +H +  K  LDK + +N AL+DM++KCG + +A  +F   + K+  +W+ M+  ++  G 
Sbjct: 64  VHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGD 123

Query: 307 GHKSILMFEEMMKA--QVSPDEITFLGLLYACSHTGLV 342
            H +  +  +M+     V  DE+T L  +  C H   +
Sbjct: 124 THGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFL 161


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 194/526 (36%), Positives = 315/526 (59%), Gaps = 12/526 (2%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           ++H   +      D  + TKLI   +      S+++A  +FD+  +  I ++N + R  +
Sbjct: 98  RVHRHILDNGSDQDPFLATKLIGMYSD---LGSVDYARKVFDKTRKRTIYVWNALFRALT 154

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEA----LEEGKQLHCFAIKLG 154
            +      + L+ ++   G+  D +++  +LKAC  V +E     L +GK++H    + G
Sbjct: 155 LAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKAC--VASECTVNHLMKGKEIHAHLTRRG 212

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
            +S++Y+ TTL+++YA    V+ A  +F  +    VVS++A+I  YA++ +  EAL  FR
Sbjct: 213 YSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFR 272

Query: 215 EL--QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           E+  + ++  P  VTM+S L +CA L +L+ GK IH YI + GLD  + V +AL+ M+ +
Sbjct: 273 EMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGR 332

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
           CG+L+    VFD M  +D  +W+++I +Y  HG G K+I +FEEM+    SP  +TF+ +
Sbjct: 333 CGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSV 392

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L ACSH GLV+EG   F +M   +GI P I+HY CMVDLLGRA RLDEA + + ++  + 
Sbjct: 393 LGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEP 452

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452
            P +W +LL SC  H N+ LA++   R+F L+  + G+YV+L+++ A A  W++V  ++K
Sbjct: 453 GPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKK 512

Query: 453 LMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSL 512
           L++ RG+ K+PG   +EV   +  F S D  +     +   L +L +++K  GY+P T  
Sbjct: 513 LLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKG 572

Query: 513 VHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           V + ++E EEKE  +  HSEKLA+ FGL+NT  G  IR+ KNLR+C
Sbjct: 573 VLY-ELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLC 617



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 175/363 (48%), Gaps = 24/363 (6%)

Query: 111 VELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA 170
           + +L+    P   ++  L+  C      +L +  ++H   +  G + + ++ T LI +Y+
Sbjct: 66  IRVLSQESSPSQQTYELLILCCG--HRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYS 123

Query: 171 ECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLS 230
           +   V+ AR++F+   +  +  +NA+  A   +    E L L+ ++    ++    T   
Sbjct: 124 DLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTY 183

Query: 231 ALSSCA----LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
            L +C      +  L  GK IH ++ + G   +V + T L+DM+A+ G +D A  VF  M
Sbjct: 184 VLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGM 243

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK--AQVSPDEITFLGLLYACSHTGLVDE 344
             ++  +WSAMI  YA +G+  +++  F EMM+     SP+ +T + +L AC+    +++
Sbjct: 244 PVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQ 303

Query: 345 G--WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
           G   + +   R    I+P I     +V + GR G+L+   R  D +  +   + W +L+S
Sbjct: 304 GKLIHGYILRRGLDSILPVI---SALVTMYGRCGKLEVGQRVFDRMHDRDV-VSWNSLIS 359

Query: 403 SCSSHNNLGLAKQVIERIFELDDSHGGD-----YVILSNLCARAGRWEDVDYLRKLM-KD 456
           S   H   G  K+ I+ IFE   ++G       +V +   C+  G  E+   L + M +D
Sbjct: 360 SYGVH---GYGKKAIQ-IFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRD 415

Query: 457 RGV 459
            G+
Sbjct: 416 HGI 418



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 71/341 (20%), Positives = 129/341 (37%), Gaps = 42/341 (12%)

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY 250
           +S N +I +  +  +  +A+ +    QE +  P+  T    +  C    SL     +H +
Sbjct: 47  ISNNQLIQSLCKEGKLKQAIRVLS--QESS--PSQQTYELLILCCGHRSSLSDALRVHRH 102

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310
           I   G D+   + T LI M++  G +D A  VFD    +    W+A+  A    G G + 
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD------KYGIVPGIKH 364
           + ++ +M +  V  D  T+  +L AC  +       N+    ++      + G    +  
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTV---NHLMKGKEIHAHLTRRGYSSHVYI 219

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA--KQVIERIFE 422
              +VD+  R G +D A      +P+++  + W  ++ +C + N       +   E + E
Sbjct: 220 MTTLVDMYARFGCVDYASYVFGGMPVRNV-VSWSAMI-ACYAKNGKAFEALRTFREMMRE 277

Query: 423 LDDSHGGDYVILSNL--CARAGRWEDVDYLRKLMKDRG-----------VLKVPGCSSIE 469
             DS      ++S L  CA     E    +   +  RG           V     C  +E
Sbjct: 278 TKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLE 337

Query: 470 VNNVV------------REFFSGDGVHSYSTDLQKALDELV 498
           V   V                S  GVH Y     +  +E++
Sbjct: 338 VGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEML 378


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 212/610 (34%), Positives = 326/610 (53%), Gaps = 82/610 (13%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINF---CTQNPTTSSMEHAHLL 78
           P+A+      ++ +  +Q+H +   +   +D  V + L++    C Q      +  AH +
Sbjct: 118 PSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQ------IRDAHRV 171

Query: 79  FDRIPEPDIV--------------------LF---------------NTMARGYSRSKTP 103
           FDR+ EPD+V                    LF               N M  G++ S   
Sbjct: 172 FDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLY 231

Query: 104 IRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCT 163
             A+ +F+++   G  PD  +  S+L A      E L  G  +H + IK GL S+  V +
Sbjct: 232 SEAVLMFLDMHLRGFEPDGTTISSVLPAVG--DLEDLVMGILIHGYVIKQGLVSDKCVSS 289

Query: 164 TLINLYAECS-------------------------------DVEAARRIFENIS----EP 188
            LI++Y +CS                                VE++ R+F  +     E 
Sbjct: 290 ALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMEL 349

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
            VVS+ ++I   +++ R  EAL LFRE+Q   +KP  VT+   L +C  + +L  GK  H
Sbjct: 350 NVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAH 409

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
            +  + G+   V V +ALIDM+AKCGR+  +   FD +  K+   W+A+I  YA HG+  
Sbjct: 410 CFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAK 469

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
           +++ +F+ M ++   PD I+F  +L ACS +GL +EG  YF SM  KYGI   ++HY CM
Sbjct: 470 EAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACM 529

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428
           V LL RAG+L++AY  I  +P+     +W  LLSSC  HNN+ L +   E++FEL+ S+ 
Sbjct: 530 VTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNP 589

Query: 429 GDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYST 488
           G+Y++LSN+ A  G W +V+ +R +MK++G+ K PGCS IEV N V    +GD  H   T
Sbjct: 590 GNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMT 649

Query: 489 DLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTT 548
            + + LD+L  E+K +GY P+ + V   D+E+++KE  L  HSEKLA+ FGLLNTPPG  
Sbjct: 650 QIIEKLDKLSMEMKKLGYFPEINFVLQ-DVEEQDKEQILCGHSEKLAVVFGLLNTPPGYP 708

Query: 549 IRVVKNLRVC 558
           ++V+KNLR+C
Sbjct: 709 LQVIKNLRIC 718



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 135/502 (26%), Positives = 232/502 (46%), Gaps = 88/502 (17%)

Query: 32  TSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFN 91
            S    +Q HA  +KT L ND ++ TKL++    N   +    A L+ D +PEP++  F+
Sbjct: 27  ASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFAD---ATLVLDLVPEPNVFSFS 83

Query: 92  TMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAI 151
           T+   +S+      A+  F ++L  GL+PD+   PS +KACA  G  AL+  +Q+H  A 
Sbjct: 84  TLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACA--GLSALKPARQVHGIAS 141

Query: 152 KLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS------- 204
             G +S+ +V ++L+++Y +C+ +  A R+F+ + EP VVS++A++ AYAR         
Sbjct: 142 VSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKR 201

Query: 205 ----------RPN------------------EALSLFRELQERNLKPTDVTMLSALSSCA 236
                     +PN                  EA+ +F ++  R  +P   T+ S L +  
Sbjct: 202 LFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVG 261

Query: 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ---- 292
            L  L +G  IH Y+ K GL     V++ALIDM+ KC    +   VFD M   D      
Sbjct: 262 DLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNA 321

Query: 293 -------------------------------AWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
                                          +W++MI   + +G+  +++ +F EM  A 
Sbjct: 322 FIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAG 381

Query: 322 VSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
           V P+ +T   LL AC +   +  G   + +S+R   GI   +     ++D+  + GR+  
Sbjct: 382 VKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRR--GISTDVYVGSALIDMYAKCGRIQA 439

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS----- 435
           +    D +P K+  + W  +++  + H   G AK+ +E IF+L    G    I+S     
Sbjct: 440 SRICFDGIPTKNL-VCWNAVIAGYAMH---GKAKEAME-IFDLMQRSGQKPDIISFTCVL 494

Query: 436 NLCARAGRWEDVDYLRKLMKDR 457
           + C+++G  E+  Y    M  +
Sbjct: 495 SACSQSGLTEEGSYYFNSMSSK 516


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 193/540 (35%), Positives = 322/540 (59%), Gaps = 14/540 (2%)

Query: 25   LSLLPRC---TSFRGLKQIHAVTIKTHLQNDLNVLTKLIN--FCTQNPTTSSMEHAHLLF 79
            L+ +P C   +    LK++H  ++K        V  +L+   F        S+ +A  +F
Sbjct: 754  LNAVPVCFHESFLPSLKELHCYSLKQEF-----VYNELVANAFVASYAKCGSLSYAQRVF 808

Query: 80   DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEA 139
              I    +  +N +  G+++S  P  ++   +++  SGLLPD ++  SLL AC+ +  ++
Sbjct: 809  HGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKL--KS 866

Query: 140  LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
            L  GK++H F I+  L  +L+V  ++++LY  C ++   + +F+ + +  +VS+N +IT 
Sbjct: 867  LRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITG 926

Query: 200  YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
            Y ++  P+ AL +FR++    ++   ++M+    +C+LL SL LG+  H Y  K+ L+  
Sbjct: 927  YLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDD 986

Query: 260  VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
              +  +LIDM+AK G +  +  VF+ +  K T +W+AMI+ Y  HG   ++I +FEEM +
Sbjct: 987  AFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQR 1046

Query: 320  AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
               +PD++TFLG+L AC+H+GL+ EG  Y   M+  +G+ P +KHY C++D+LGRAG+LD
Sbjct: 1047 TGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLD 1106

Query: 380  EAYRFI-DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438
            +A R + +E+  ++   +W++LLSSC  H NL + ++V  ++FEL+     +YV+LSNL 
Sbjct: 1107 KALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLY 1166

Query: 439  ARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELV 498
            A  G+WEDV  +R+ M +  + K  GCS IE+N  V  F  G+       +++     L 
Sbjct: 1167 AGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILE 1226

Query: 499  KELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             ++  +GY PDT  V H D+ +EEK   LR HSEKLA+T+GL+ T  GTTIRV KNLR+C
Sbjct: 1227 MKISKMGYRPDTMSVQH-DLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRIC 1285



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 168/331 (50%), Gaps = 17/331 (5%)

Query: 24  ALSLLPRCTSFR-----GLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLL 78
           AL LL + +  R     G K    V+  T L+ND  + T++I   T      S + +  +
Sbjct: 441 ALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRII---TMYAMCGSPDDSRFV 497

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS-GLLPDDYSFPSLLKACACVGA 137
           FD +   ++  +N +   YSR++     +  F+E++++  LLPD +++P ++KACA  G 
Sbjct: 498 FDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACA--GM 555

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
             +  G  +H   +K GL  +++V   L++ Y     V  A ++F+ + E  +VS+N++I
Sbjct: 556 SDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMI 615

Query: 198 TAYARSSRPNEALSLFRELQERN----LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
             ++ +    E+  L  E+ E N      P   T+++ L  CA    + LGK +H +  K
Sbjct: 616 RVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVK 675

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
             LDK + +N AL+DM++KCG + +A  +F   + K+  +W+ M+  ++  G  H +  +
Sbjct: 676 LRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDV 735

Query: 314 FEEMMKA--QVSPDEITFLGLLYACSHTGLV 342
             +M+     V  DE+T L  +  C H   +
Sbjct: 736 LRQMLAGGEDVKADEVTILNAVPVCFHESFL 766



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 148/305 (48%), Gaps = 13/305 (4%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINF-CTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           +H + +KT L  D+ V   L++F  T    T +++    LFD +PE ++V +N+M R +S
Sbjct: 564 VHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQ----LFDIMPERNLVSWNSMIRVFS 619

Query: 99  RSKTPIRAIFLFVELL----NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
            +     +  L  E++    +   +PD  +  ++L  CA      +  GK +H +A+KL 
Sbjct: 620 DNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCA--REREIGLGKGVHGWAVKLR 677

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           L+  L +   L+++Y++C  +  A+ IF+  +   VVS+N ++  ++     +    + R
Sbjct: 678 LDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLR 737

Query: 215 EL--QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           ++     ++K  +VT+L+A+  C     L   K +H Y  K        V  A +  +AK
Sbjct: 738 QMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAK 797

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
           CG L  A  VF  +  K   +W+A+I  +A       S+    +M  + + PD  T   L
Sbjct: 798 CGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSL 857

Query: 333 LYACS 337
           L ACS
Sbjct: 858 LSACS 862


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 199/548 (36%), Positives = 313/548 (57%), Gaps = 14/548 (2%)

Query: 16  KLCTNTPNALSLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSM 72
           K+  N    + +L  C     +K+   +H   I+  +  +L+ L   +        T ++
Sbjct: 297 KMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPAL--MELYADTGNL 354

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
              H +F+ I E  I+ +NT+   ++R+  P  A+ LFV++   GL+PD YS  S L AC
Sbjct: 355 RDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSAC 414

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
             +    L  G Q+H + IK G N N +V   LI++YA+C  V +A ++FE I E  +V+
Sbjct: 415 GTISFSQL--GAQIHGYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVT 471

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +N++I  ++++    EA++LF ++    +K   +T LS + +C+ LG L+ GKW+H  + 
Sbjct: 472 WNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLI 531

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
            YGL K   ++TAL DM++KCG L  A  VFD MS +   +WS MI  Y  HGQ + +I 
Sbjct: 532 MYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATIS 591

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           +F +M+ + + P++ITF+ +L ACSH G V+EG  YF SM + +G+ P   H+ CMVDLL
Sbjct: 592 LFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSE-FGVEPKHDHFACMVDLL 650

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432
            RAG L+ AY+ I  LP  +   +W  LL+ C  H  + + K + + + ++D +  G Y 
Sbjct: 651 SRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYT 710

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
           +LSN+ A  G W+    +R +MK +G+ KVPG S+IE++  +  F  GD  HS + D+ +
Sbjct: 711 LLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYR 770

Query: 493 ALDELVKELKMVGY--VPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIR 550
            L+     +    Y   PD S+V       E   ++   HSEKLAI FG++NT PGTT+R
Sbjct: 771 FLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVS---HSEKLAIAFGIINTRPGTTLR 827

Query: 551 VVKNLRVC 558
           + KNLRVC
Sbjct: 828 ISKNLRVC 835



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 196/386 (50%), Gaps = 21/386 (5%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           + L  RC +   L Q+HA    T L       TKLI    Q       E +  +FD  P+
Sbjct: 5   MPLFRRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQ---IGIFESSKRVFDTFPK 61

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP-DDYSFPSLLKACACVGAEALEEG 143
           PD  ++  + + Y        A+ L+ E++        ++ FPS+LKAC+  G   L  G
Sbjct: 62  PDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGD--LSVG 119

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
            ++H   IK G  S+  V T+L+ +Y E S ++ A + F+ +    VV++++I+  + ++
Sbjct: 120 GKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQN 179

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
            + +E L +F ++    ++P  VTMLS   +C+ LGSL LG+ +H Y+ +  ++    +N
Sbjct: 180 GQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLN 239

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
            +LI M+ K G L  A  +F+N+  + T  W+ MI  Y   G   +++ +F +M + ++ 
Sbjct: 240 NSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKME 299

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV------PGIKHYG-CMVDLLGRAG 376
           P+++T +G+L AC+  G V EG       R  +G V      P +   G  +++L    G
Sbjct: 300 PNQVTMVGVLCACARLGRVKEG-------RSVHGFVIRRAMDPELDFLGPALMELYADTG 352

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLS 402
            L + ++  + +  K T + W TL+S
Sbjct: 353 NLRDCHKVFETIKEK-TILSWNTLIS 377


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 197/538 (36%), Positives = 307/538 (57%), Gaps = 48/538 (8%)

Query: 27  LLPRCTSFRGLK---QIHAVTIKTHLQNDL---NVLTKLINFCTQNPTTSSMEHAHLLFD 80
           +L  C+    L+   Q+H   +K  L  +L   N L  +   C        +  A  + D
Sbjct: 143 VLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKC------GCLREARKVLD 196

Query: 81  RIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEAL 140
           ++P  D+V +N+M  GY++S                G   D                 AL
Sbjct: 197 QMPYRDVVSWNSMVAGYAQS----------------GQFDD-----------------AL 223

Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY 200
           E  K++   ++ L  ++      + +  Y    +V+    +FE +++  ++S+N +I  Y
Sbjct: 224 EICKEMD--SLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIY 281

Query: 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
             +S PNEA+SLF +++E  +KP  VT+ S L +C  L +L LG+ +H+YI+K  L   +
Sbjct: 282 VNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNL 341

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            +  AL+DM+AKCG L++A  VFD M  +D  +W++M+ AY   GQG+ ++ +F +M+ +
Sbjct: 342 LLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDS 401

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
             +PD I F+ +L ACSHTGL+D+G +YF  M ++YGIVP I+H+ CMVDL GRAG ++E
Sbjct: 402 GQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEE 461

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           AY FI ++P++    +W  LLS+C  H+ + +     + +F+L     G YV+LSN+ A+
Sbjct: 462 AYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAK 521

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
           AG W+DV  +R  MK  G+ KVPG S++E+N  V  F +GD  H  + ++   LD LV +
Sbjct: 522 AGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGK 581

Query: 501 LKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +K +GY+P T    H D+E E+KE  L  HSEKLAI F +LNT  GT IR+ KNLRVC
Sbjct: 582 MKELGYIPQTESALH-DVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVC 638



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 187/378 (49%), Gaps = 41/378 (10%)

Query: 27  LLPRCTSFRGLKQIHA-VTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP 85
           +L +    + L ++H+ + I  HL+ D  +  KL+   +    TS    A  +FDR  E 
Sbjct: 44  ILDQYPGIKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSV---ARYIFDRSLEK 100

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
           ++V FN M R Y  +   + A+ +F  +L+    PD Y+FP +LKAC+  G + L  G Q
Sbjct: 101 NVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACS--GLDNLRVGLQ 158

Query: 146 LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSR 205
           +H   +K+GL++NL++   L+ +Y +C  +  AR++ + +    VVS+N+++  YA+S +
Sbjct: 159 VHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQ 218

Query: 206 PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTA 265
            ++AL + +E+   NL   D   +++LS      SL+  ++IH                 
Sbjct: 219 FDDALEICKEMDSLNLN-HDAGTMASLSPVVCYTSLENVQYIH----------------- 260

Query: 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
                          ++F+ M+ K+  +W+ MI  Y  +   ++++ +F +M +  + PD
Sbjct: 261 ---------------NMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPD 305

Query: 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI 385
            +T   LL AC     +  G    +   +K  + P +     ++D+  + G L+EA    
Sbjct: 306 AVTIASLLPACGDLSALFLG-RRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVF 364

Query: 386 DELPIKSTPILWRTLLSS 403
           D++ ++   + W +++S+
Sbjct: 365 DKMRLRDV-VSWTSMMSA 381



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 133/280 (47%), Gaps = 10/280 (3%)

Query: 144 KQLHCFAIKLGLNSNLYVCTTL----INLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
           K L+    K+ +N +L +  TL    +  Y+   +   AR IF+   E  VV +N +I +
Sbjct: 52  KTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRS 111

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
           Y  ++   EALS+F+ +      P   T    L +C+ L +L +G  +H+ I K GLD  
Sbjct: 112 YVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTN 171

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           + +  AL+ M+ KCG L +A  V D M  +D  +W++M+  YA  GQ   ++ + +EM  
Sbjct: 172 LFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDS 231

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
             ++ D  T   L     +T L  E   Y ++M ++      +  +  M+ +       +
Sbjct: 232 LNLNHDAGTMASLSPVVCYTSL--ENVQYIHNMFERM-TKKNLISWNVMIAIYVNNSMPN 288

Query: 380 EAYRF---IDELPIKSTPILWRTLLSSCSSHNNLGLAKQV 416
           EA      ++E  +K   +   +LL +C   + L L +++
Sbjct: 289 EAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRL 328


>gi|357124741|ref|XP_003564056.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Brachypodium distachyon]
          Length = 594

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 213/548 (38%), Positives = 325/548 (59%), Gaps = 26/548 (4%)

Query: 27  LLPRCTSFRGLKQIHAVTIKTH-LQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP 85
           LLPR T+    KQ HA  + +  L  D ++  + ++    +   +++ HA L    +P P
Sbjct: 17  LLPRLTTLSHYKQFHARLLSSAVLHLDPSLRARFLDRLALSDHPAALPHALLFLRSLPSP 76

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP-----DDYSFPSLLKACA-CVGAEA 139
               FN   RG + S  P R++ L    L     P     D  S    LKA A C    A
Sbjct: 77  ATNDFNAALRGLAASPHPARSLLLLAGRLLPSPSPPPPRLDALSLSFALKASARCSDGTA 136

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
             +   L    ++LG   ++ + TTL++ YA+C D+ +AR++F+ +    V S+NA++  
Sbjct: 137 TLQLHAL---LLRLGCTPDVRLITTLVDSYAKCGDLASARKVFDEMVVRDVASWNALLAG 193

Query: 200 YARSSRPNEALSLF-------RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
            A+ + P  AL+LF       REL  R  +P +VT+++ALS+CA +GSL  G ++HE+ +
Sbjct: 194 LAQGTEPTLALALFHRLVGSFRELPPRE-EPNEVTIVAALSACAQIGSLQDGLYVHEFAR 252

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ--AWSAMIVAYATHGQGHKS 310
           K G++  V+V  ALIDM++KCG LD A+ VF ++  +D    +++  I A + HG G  +
Sbjct: 253 KIGVNGNVRVCNALIDMYSKCGSLDLALEVFHSIKREDRTLVSYNTAIQAVSMHGHGGDA 312

Query: 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370
           + +F+EM    + PDE+T++ +L  C+H GLVD+G   F+SMR    ++P +KHYG +VD
Sbjct: 313 LRLFDEM-PTFIEPDEVTYIAVLCGCNHAGLVDDGLRVFHSMR----VLPNVKHYGAVVD 367

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430
           LLGRAGRL EAY  I  +P  +  +LW+TLL +  +H ++ LA+    ++ EL  +  GD
Sbjct: 368 LLGRAGRLAEAYDTIVSMPFPADIVLWQTLLGAAKTHGDVELAELAATKLDELGSNVDGD 427

Query: 431 YVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDL 490
           YV+LSN+ A   RW DV  +R  M+   V KVPG S  E++ V+ +F +GD  H    ++
Sbjct: 428 YVLLSNVYASKARWADVRRVRDTMRSNDVRKVPGFSYTEISGVMHKFINGDKEHPRWQEI 487

Query: 491 QKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIR 550
            +AL+E+V  +  +GY P+TS V H D+ +EEK+ AL YHSEKLAI FGL+ TPPG T+R
Sbjct: 488 YRALEEIVSRIGELGYEPETSNVLH-DIGEEEKQYALSYHSEKLAIAFGLIATPPGETLR 546

Query: 551 VVKNLRVC 558
           V+KNLR C
Sbjct: 547 VIKNLRTC 554


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 190/525 (36%), Positives = 316/525 (60%), Gaps = 11/525 (2%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLIN--FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMA 94
           LK++H  ++K        V  +L+   F        S+ +A  +F  I    +  +N + 
Sbjct: 414 LKELHCYSLKQEF-----VYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALI 468

Query: 95  RGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
            G+++S  P  ++   +++  SGLLPD ++  SLL AC+ +  ++L  GK++H F I+  
Sbjct: 469 GGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKL--KSLRLGKEVHGFIIRNW 526

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           L  +L+V  ++++LY  C ++   + +F+ + +  +VS+N +IT Y ++  P+ AL +FR
Sbjct: 527 LERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFR 586

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
           ++    ++   ++M+    +C+LL SL LG+  H Y  K+ L+    +  +LIDM+AK G
Sbjct: 587 QMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNG 646

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
            +  +  VF+ +  K T +W+AMI+ Y  HG   ++I +FEEM +   +PD++TFLG+L 
Sbjct: 647 SITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLT 706

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI-DELPIKST 393
           AC+H+GL+ EG  Y   M+  +G+ P +KHY C++D+LGRAG+LD+A R + +E+  ++ 
Sbjct: 707 ACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEAD 766

Query: 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKL 453
             +W++LLSSC  H NL + ++V  ++FEL+     +YV+LSNL A  G+WEDV  +R+ 
Sbjct: 767 VGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQR 826

Query: 454 MKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLV 513
           M +  + K  GCS IE+N  V  F  G+       +++     L  ++  +GY PDT  V
Sbjct: 827 MNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSV 886

Query: 514 HHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            H D+ +EEK   LR HSEKLA+T+GL+ T  GTTIRV KNLR+C
Sbjct: 887 QH-DLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRIC 930



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 168/331 (50%), Gaps = 17/331 (5%)

Query: 24  ALSLLPRCTSFR-----GLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLL 78
           AL LL + +  R     G K    V+  T L+ND  + T++I   T      S + +  +
Sbjct: 86  ALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRII---TMYAMCGSPDDSRFV 142

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS-GLLPDDYSFPSLLKACACVGA 137
           FD +   ++  +N +   YSR++     +  F+E++++  LLPD +++P ++KACA  G 
Sbjct: 143 FDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACA--GM 200

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
             +  G  +H   +K GL  +++V   L++ Y     V  A ++F+ + E  +VS+N++I
Sbjct: 201 SDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMI 260

Query: 198 TAYARSSRPNEALSLFRELQERN----LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
             ++ +    E+  L  E+ E N      P   T+++ L  CA    + LGK +H +  K
Sbjct: 261 RVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVK 320

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
             LDK + +N AL+DM++KCG + +A  +F   + K+  +W+ M+  ++  G  H +  +
Sbjct: 321 LRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDV 380

Query: 314 FEEMMKA--QVSPDEITFLGLLYACSHTGLV 342
             +M+     V  DE+T L  +  C H   +
Sbjct: 381 LRQMLAGGEDVKADEVTILNAVPVCFHESFL 411



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 148/305 (48%), Gaps = 13/305 (4%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINF-CTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           +H + +KT L  D+ V   L++F  T    T +++    LFD +PE ++V +N+M R +S
Sbjct: 209 VHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQ----LFDIMPERNLVSWNSMIRVFS 264

Query: 99  RSKTPIRAIFLFVELL----NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
            +     +  L  E++    +   +PD  +  ++L  CA      +  GK +H +A+KL 
Sbjct: 265 DNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCA--REREIGLGKGVHGWAVKLR 322

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           L+  L +   L+++Y++C  +  A+ IF+  +   VVS+N ++  ++     +    + R
Sbjct: 323 LDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLR 382

Query: 215 ELQE--RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           ++     ++K  +VT+L+A+  C     L   K +H Y  K        V  A +  +AK
Sbjct: 383 QMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAK 442

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
           CG L  A  VF  +  K   +W+A+I  +A       S+    +M  + + PD  T   L
Sbjct: 443 CGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSL 502

Query: 333 LYACS 337
           L ACS
Sbjct: 503 LSACS 507


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 198/536 (36%), Positives = 311/536 (58%), Gaps = 9/536 (1%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIP 83
           ++ +  C+S    + +H   IK+   N   +  +L++ +     T  ++E    LFD +P
Sbjct: 45  ITAISTCSSISYCRALHCRVIKSVNYNHGFIGDQLVSSYVELGCTKDALE----LFDELP 100

Query: 84  EPDIVLFNTMARGYSR-SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           + D+V +N++  G+SR +   I    LF      GL P++ +   ++ ACA VG   L+ 
Sbjct: 101 DKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVGE--LDV 158

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           GK +H  A+K G+   + V  +LINLY +C  +EAA  +FE +S   +VS+N+++  +  
Sbjct: 159 GKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVSWNSMVAVHVH 218

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
                + +  F  ++   +     T++S L +C  LG   L + +H YI   GLD  + +
Sbjct: 219 MGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLAEAVHGYILNGGLDGNLAI 278

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
            TAL+D++AK G L D+  VF  M   D  AW+AM+ +YA HG+G ++I  FE M++  V
Sbjct: 279 ATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELMVREGV 338

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            PD +TF  LL ACSH+GLV+EG NYF  M + YG+   ++HY CMVDLLGR+G L++AY
Sbjct: 339 VPDHVTFTHLLSACSHSGLVEEGKNYFKIMYEFYGVELRVEHYSCMVDLLGRSGHLNDAY 398

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
           + I  +P++    +W  L+ +C    N+ L K+V ER+F LD S   +Y+ LSN+ + AG
Sbjct: 399 KLIKSMPMEPNSGVWGALIGACRVRGNIELGKEVAERLFSLDPSDSRNYITLSNMYSAAG 458

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           +W D   +R LMK+R +++ PGCS IE  N +  F  GD  H  +  +   L+ELV++ +
Sbjct: 459 QWRDASKVRALMKERVLIRNPGCSYIEHGNKIHCFVMGDQSHPDTEQIYNKLEELVRKNR 518

Query: 503 MVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            VG+   T  V H D+++E KE  +  HSEKLAI FGLL T  G  + + KN+R+C
Sbjct: 519 EVGFASKTEYVLH-DVDEEVKEDLINKHSEKLAIAFGLLVTNAGMPLIITKNIRIC 573


>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
 gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
          Length = 597

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 179/423 (42%), Positives = 265/423 (62%), Gaps = 4/423 (0%)

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
           +L   +QLH   +  G   +  + T+L+  YA   D + AR++F+ +     V++N +IT
Sbjct: 136 SLAHARQLHANVVAEGHLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLIT 195

Query: 199 AYARSSRPNEALSLFRELQERNLK--PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
            YAR+ R  +AL LF E++ ++ +  P DVT +  L +C+ LG+LD G+ +  Y +++G 
Sbjct: 196 CYARNRRTKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGY 255

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
              +KV  +LI M+ +CG +D A  VF     K    W+AMI   A +G G+ +I +FEE
Sbjct: 256 GGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEE 315

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M+++ V+PDE TF G+L ACSH+GLVDEG+ +F  MR +YG+ P ++HYGC+VDL+GRAG
Sbjct: 316 MIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAG 375

Query: 377 RLDEAYRFI-DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
            LDEAY F+ +E+ +     +WRTLL +C  H ++ L ++VI  + EL     GDYV+L 
Sbjct: 376 LLDEAYEFVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLLL 435

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           N  A  G W  V  +RKLM++ G+   PGC+++E N  V EF + D  H    ++ + L 
Sbjct: 436 NTYAAVGEWSKVSEIRKLMQEEGIQTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENLS 495

Query: 496 ELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNL 555
           E+ K+L++ GYVP+ S   H D++ E KE AL YHSEKLAI F LL TP    IR+ KNL
Sbjct: 496 EIYKQLRIAGYVPNVSSELH-DLDSEGKESALTYHSEKLAIAFALLVTPQHRPIRLAKNL 554

Query: 556 RVC 558
           RVC
Sbjct: 555 RVC 557



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 163/330 (49%), Gaps = 17/330 (5%)

Query: 24  ALSLLPRCTSFRGLKQIHA-VTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           A+ L PRC S    +Q+HA V  + HL++ L + T L+  C  N      + A  LFD +
Sbjct: 128 AILLKPRC-SLAHARQLHANVVAEGHLRDAL-LATSLMR-CYAN--RGDGDGARKLFDEM 182

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELL--NSGLLPDDYSFPSLLKACACVGAEAL 140
           P  D V +N +   Y+R++    A+ LF E+   +S   PDD +   LL+AC+ +GA  L
Sbjct: 183 PVRDAVAWNVLITCYARNRRTKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGA--L 240

Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY 200
           + G+Q+  +A + G    L V  +LI +Y  C  V+ A R+F    +  VV++ A+I+  
Sbjct: 241 DFGEQVWAYAEEHGYGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGL 300

Query: 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK-KYGLDKY 259
           A +   N+A+S+F E+   ++ P + T    LS+C+  G +D G    + ++ +YGL   
Sbjct: 301 AANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPN 360

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDN--MSGKDTQAWSAMIVAYATHGQ---GHKSILMF 314
           V+    ++D+  + G LD+A     N      D   W  ++ A   HG    G + I   
Sbjct: 361 VRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVIGNL 420

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDE 344
            E +KAQ + D +  L    A      V E
Sbjct: 421 IE-LKAQQAGDYVLLLNTYAAVGEWSKVSE 449


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 180/486 (37%), Positives = 285/486 (58%), Gaps = 8/486 (1%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +FD++P  D+V +  +  GY+++  P  AI L  ++L +   P+ ++F SLLKA   
Sbjct: 11  ARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGA 70

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
            G  ++  G+Q+H  A+K   + ++YV + L+++YA C  ++ A  +F+ +     VS+N
Sbjct: 71  CGGCSI--GEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWN 128

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           A+I  +AR +     L  F E+Q      T  T  S  S+ A +G+L+ G+W+H ++ K 
Sbjct: 129 ALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKS 188

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
           G      V   ++ M+AK G + DA  VFD M  +D   W+ M+ A A +G G +++  F
Sbjct: 189 GQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHF 248

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
           EE+ K  +  ++ITFL +L ACSH GLV EG +YF  M+D Y + P I HY   VDLLGR
Sbjct: 249 EEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKD-YNVQPEIDHYVSFVDLLGR 307

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
           AG L EA  F+ ++P++ T  +W  LL +C  H N  + +   + +FELD    G  V+L
Sbjct: 308 AGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLL 367

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
            N+ A  G+W D   +RK+MK  GV K P CS +++ N V  F + D  H  S D+ +  
Sbjct: 368 YNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMW 427

Query: 495 DELVKELKMVGYVPDTS--LVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVV 552
           +E+   +K  GYVP+T+  L+H   + ++E+E  L+YHSEK+A+ F L+N P G +IR++
Sbjct: 428 EEINMRIKKAGYVPNTAHVLLH---INEQERETKLKYHSEKIALAFALINMPAGASIRIM 484

Query: 553 KNLRVC 558
           KN+R+C
Sbjct: 485 KNIRIC 490



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 130/257 (50%), Gaps = 7/257 (2%)

Query: 168 LYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT 227
           +Y +C  V  AR +F+ +    VVS+  +I  YA++  P EA+ L  ++     +P   T
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 228 MLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS 287
             S L +    G   +G+ +H    KY  D+ V V +AL+DM+A+C ++D A+ VFD + 
Sbjct: 61  FTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLV 120

Query: 288 GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-W 346
            K+  +W+A+I  +A    G  +++ F EM +        T+  +  A +  G +++G W
Sbjct: 121 SKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRW 180

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
            + + ++    +   + +   M+ +  ++G + +A +  D +  K   + W T+L++ + 
Sbjct: 181 VHAHLIKSGQKLTAFVGN--TMLGMYAKSGSMVDARKVFDRMD-KRDLVTWNTMLTALAQ 237

Query: 407 HNNLGLAKQVIERIFEL 423
           +   GL K+ +    E+
Sbjct: 238 Y---GLGKEAVAHFEEI 251



 Score = 42.0 bits (97), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 75/176 (42%), Gaps = 6/176 (3%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
            S   R  +    + +HA  IK+  +    V   ++    +   + SM  A  +FDR+ +
Sbjct: 166 FSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAK---SGSMVDARKVFDRMDK 222

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
            D+V +NTM    ++      A+  F E+   G+  +  +F S+L AC+  G   ++EGK
Sbjct: 223 RDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGG--LVKEGK 280

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDV-EAARRIFENISEPCVVSYNAIITA 199
                     +   +    + ++L      + EA   +F+   EP    + A++ A
Sbjct: 281 HYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGA 336


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 197/521 (37%), Positives = 287/521 (55%), Gaps = 38/521 (7%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  L D +  P  V +N M  GY R      A   F  + + G+  D+Y++ SL+ AC  
Sbjct: 236 ARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGS 295

Query: 135 VGAEA--LEEGKQLHCFAIKLGLNSN----LYVCTTLINLYAECSDVEAARRIFENISEP 188
              +      G+Q+H + ++  +  +    L V   LI  Y +   +  ARR+F+ +   
Sbjct: 296 CNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVR 355

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERN---------------------------- 220
            ++S+NA+++ Y  + R  EA S+F E+ ERN                            
Sbjct: 356 DIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMK 415

Query: 221 ---LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              L+P D     A+++C++LGSLD G+ IH  + + G D  +    ALI M+++CG ++
Sbjct: 416 SEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVE 475

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            A SVF  M   D+ +W+AMI A A HG G K+I +FE+MMK  + PD ITFL +L AC+
Sbjct: 476 SAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACN 535

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H GL+ EG +YF +M  +YGI PG  HY  ++DLL RAG   +A   I  +P ++   +W
Sbjct: 536 HAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIW 595

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             LL+ C  H N+ L  Q  +R+ EL     G Y+ILSN+ A  G+W++V  +R LM++R
Sbjct: 596 EALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRER 655

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           GV K PGCS +EV N+V  F   D  H     +   L +LV E+K +GYVPDT  V H D
Sbjct: 656 GVKKEPGCSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVNEMKKLGYVPDTKFVLH-D 714

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           ME E KE +L  HSEKLA+ +G++  P G TIRV KNLR+C
Sbjct: 715 MESEHKEHSLSTHSEKLAVVYGIMKLPLGATIRVFKNLRIC 755



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 119/502 (23%), Positives = 209/502 (41%), Gaps = 122/502 (24%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           + +HA  + +  + +  +L +LIN +C     +S++ +A  LFD+IP+PDIV   T+   
Sbjct: 25  RAVHAHILTSGFKPNTFILNRLINIYCK----SSNITYARKLFDKIPKPDIVARTTLLSA 80

Query: 97  YSRS-----------KTPIR----------------------AIFLFVELLNSGLLPDDY 123
           YS S            TP+                       A+ LFV++   G LPD +
Sbjct: 81  YSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPF 140

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGL-------NSNL--YVC------------ 162
           +F S+L A + +  E     + LHC  IKLG        N+ L  YVC            
Sbjct: 141 TFSSVLSALSLIADEE-RHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQL 199

Query: 163 ---------------------TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
                                TT+I  Y    D+ AAR + + ++ P  V++NA+I+ Y 
Sbjct: 200 MASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYV 259

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA----LLGSLDLGKWIHEYIKKYGLD 257
           R     EA   FR +    ++  + T  S +S+C      +G  + G+ +H YI +  ++
Sbjct: 260 RRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVE 319

Query: 258 K----YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY------------ 301
                 + VN ALI  + K  R+ +A  VFD M  +D  +W+A++  Y            
Sbjct: 320 PSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSI 379

Query: 302 -------------------ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342
                              A +G G + + +F +M    + P +  F G + ACS  G +
Sbjct: 380 FSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSL 439

Query: 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
           D G    +S   + G   G+     ++ +  R G ++ A      +P   + + W  +++
Sbjct: 440 DNG-QQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDS-VSWNAMIA 497

Query: 403 SCSSHNNLGLAKQVIERIFELD 424
           + + H +   A ++ E++ + D
Sbjct: 498 ALAQHGHGVKAIELFEQMMKED 519



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 124/240 (51%), Gaps = 12/240 (5%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +E A+ +F  +PE +++ +  M  G +++      + LF ++ + GL P DY+F   + A
Sbjct: 373 IEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITA 432

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C+ +G+  L+ G+Q+H   I+LG +S L     LI +Y+ C  VE+A  +F  +     V
Sbjct: 433 CSVLGS--LDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSV 490

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK-WIHEY 250
           S+NA+I A A+     +A+ LF ++ + ++ P  +T L+ L++C   G +  G+ +    
Sbjct: 491 SWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTM 550

Query: 251 IKKYGL----DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHG 305
             +YG+    D Y +    LID+  + G    A SV  +M  +     W A++     HG
Sbjct: 551 CTRYGITPGEDHYAR----LIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHG 606


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 198/541 (36%), Positives = 309/541 (57%), Gaps = 12/541 (2%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+   C     L   KQ+H+  I++ L +D  V   L++   +     S++    +FDR+
Sbjct: 274 SVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRM 331

Query: 83  PEPDIVLFNTMARGYSRS-KTPIRAIFLFVELLNSG-LLPDDYSFPSLLKACACVGAEAL 140
            +  ++ +  +  GY ++      AI LF E++  G + P+ ++F S  KAC  +    +
Sbjct: 332 EDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRV 391

Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY 200
             GKQ+   A K GL SN  V  ++I+++ +   +E A+R FE++SE  +VSYN  +   
Sbjct: 392 --GKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGT 449

Query: 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
            R+    +A  L  E+ ER L  +  T  S LS  A +GS+  G+ IH  + K GL    
Sbjct: 450 CRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQ 509

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            V  ALI M++KCG +D A  VF+ M  ++  +W++MI  +A HG   + +  F +M++ 
Sbjct: 510 PVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEE 569

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
            V P+E+T++ +L ACSH GLV EGW +F SM + + I P ++HY CMVDLL RAG L +
Sbjct: 570 GVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTD 629

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           A+ FI+ +P ++  ++WRT L +C  H+N  L K    +I ELD +    Y+ LSN+ A 
Sbjct: 630 AFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYAC 689

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
           AG+WE+   +R+ MK+R ++K  GCS IEV + + +F+ GD  H  +  +   LD L+ E
Sbjct: 690 AGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITE 749

Query: 501 LKMVGYVPDTSLVHHGDMEDEEKEIALR---YHSEKLAITFGLLNTPPGTTIRVVKNLRV 557
           +K  GYVPDT LV H   E+ ++    R    HSEK+A+ FGL++T     +RV KNLRV
Sbjct: 750 IKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRV 809

Query: 558 C 558
           C
Sbjct: 810 C 810



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/407 (26%), Positives = 197/407 (48%), Gaps = 16/407 (3%)

Query: 26  SLLPRCT---SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           SLL  C     FR  K +HA  I+  ++ D  +   LI+  +++  ++  E       R 
Sbjct: 67  SLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRF 126

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
            + D+V ++ M   Y  +   + AI +FVE L  GL+P+DY + ++++AC+   ++ +  
Sbjct: 127 GKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACS--NSDFVGV 184

Query: 143 GKQLHCFAIKLG-LNSNLYVCTTLINLYAECSD-VEAARRIFENISEPCVVSYNAIITAY 200
           G+    F +K G   S++ V  +LI+++ +  +  E A ++F+ +SE  VV++  +IT  
Sbjct: 185 GRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRC 244

Query: 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
            +   P EA+  F ++     +    T+ S  S+CA L +L LGK +H +  + GL    
Sbjct: 245 MQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVD-- 302

Query: 261 KVNTALIDMHAKC---GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ-GHKSILMFEE 316
            V  +L+DM+AKC   G +DD   VFD M      +W+A+I  Y  +     ++I +F E
Sbjct: 303 DVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSE 362

Query: 317 MM-KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
           M+ +  V P+  TF     AC +      G         K G+         ++ +  ++
Sbjct: 363 MITQGHVEPNHFTFSSAFKACGNLSDPRVG-KQVLGQAFKRGLASNSSVANSVISMFVKS 421

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
            R+++A R  + L  K+  + + T L     + N   A +++  I E
Sbjct: 422 DRMEDAQRAFESLSEKNL-VSYNTFLDGTCRNLNFEQAFKLLSEITE 467



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 168/374 (44%), Gaps = 22/374 (5%)

Query: 59  LINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118
           +I+F   +P    ++    + +RI   D ++   +  G  R    + A+ L   +   G+
Sbjct: 3   MISFSFPSPAKLPIKSQPSVSNRINVADRLILRHLNAGDLRG--AVSALDL---MARDGI 57

Query: 119 LP-DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEA 177
            P D  +F SLLK+C  + A     GK +H   I+  +  +  +  +LI+LY++  D   
Sbjct: 58  RPMDSVTFSSLLKSC--IRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAK 115

Query: 178 ARRIFENI---SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSS 234
           A  +FE +    +  VVS++A++  Y  + R  +A+ +F E  E  L P D    + + +
Sbjct: 116 AEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRA 175

Query: 235 CALLGSLDLGKWIHEYIKKYG-LDKYVKVNTALIDMHAKC-GRLDDAVSVFDNMSGKDTQ 292
           C+    + +G+    ++ K G  +  V V  +LIDM  K     ++A  VFD MS  +  
Sbjct: 176 CSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVV 235

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
            W+ MI      G   ++I  F +M+ +    D+ T   +  AC+    +  G    +S 
Sbjct: 236 TWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLG-KQLHSW 294

Query: 353 RDKYGIVPGIKHYGCMVDLLGRA---GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
             + G+V  ++    +VD+  +    G +D+  +  D +   S  + W  L++      N
Sbjct: 295 AIRSGLVDDVE--CSLVDMYAKCSADGSVDDCRKVFDRMEDHSV-MSWTALIT--GYMKN 349

Query: 410 LGLAKQVIERIFEL 423
             LA + I    E+
Sbjct: 350 CNLATEAINLFSEM 363


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 191/552 (34%), Positives = 318/552 (57%), Gaps = 72/552 (13%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +FD I + ++V FN M R Y  +     A+ ++  +   G +PD Y++P +LKA + 
Sbjct: 73  ARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASS- 131

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYV----------CTTL------------------- 165
             +++L  G Q+H   +K+GL+ NLYV          C +L                   
Sbjct: 132 -RSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWN 190

Query: 166 --INLYAE----------CSDVEA---------------------------ARRIFENIS 186
             +++YA+          C ++EA                            + +F  ++
Sbjct: 191 SMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTNTTSDNVLYVKEMFLKLT 250

Query: 187 EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW 246
           +  V+S+N +I  Y  +S P EA+ L+ +++   ++P  V+++S L +   L +L LG+ 
Sbjct: 251 KKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRR 310

Query: 247 IHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ 306
           +H++ ++  L   + +  ALIDM+AKCG L DA +VF+ M  +D  +W+++I AY   GQ
Sbjct: 311 VHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQ 370

Query: 307 GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG 366
           G  ++ +F EM  + ++PD I F+ +L ACSH GL+D+G  Y++++  + GI P ++H+ 
Sbjct: 371 GRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDG-RYYFNLMAECGITPKLEHFA 429

Query: 367 CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
           C+VDLLGRAG++DEAY FI ++P++    +W  LLS+C  ++N+ +     +++  L+  
Sbjct: 430 CVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRVYSNMNIGILAADKLLMLNPE 489

Query: 427 HGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSY 486
           H G YV+LSN+ A+AGRW DV  +R +M+ +G+ K+PG S++E+N+ V  F +GD  H  
Sbjct: 490 HSGYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSHPQ 549

Query: 487 STDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPG 546
           S  + + LD LV ++K +GY+P+T    H D+E+E+KE  L  HSEKLA+ F ++NT PG
Sbjct: 550 SKKIYEELDVLVGKMKELGYMPETDSALH-DVEEEDKEYHLAVHSEKLAVAFAIINTKPG 608

Query: 547 TTIRVVKNLRVC 558
           T IRV KNLRVC
Sbjct: 609 TPIRVTKNLRVC 620



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 142/269 (52%), Gaps = 5/269 (1%)

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSF 125
           N T+ ++ +   +F ++ +  ++ +N M   Y  +  P  A+ L+ ++  +G+ PD  S 
Sbjct: 233 NTTSDNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSI 292

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
            S+L A   + A +L  G+++H FA +  L  NL +   LI++YA+C  +  AR +F  +
Sbjct: 293 VSVLPAYGDLSALSL--GRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQM 350

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245
               VVS+ +II+AY +  +  +A+++F E++   L P  +  +S L++C+  G LD G+
Sbjct: 351 QFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGR 410

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATH 304
           +    + + G+   ++    ++D+  + G++D+A      M  + D + W  ++ A   +
Sbjct: 411 YYFNLMAECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRVY 470

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLL 333
              +  IL  ++++   ++P+   +  LL
Sbjct: 471 SNMNIGILAADKLL--MLNPEHSGYYVLL 497



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 95/185 (51%)

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           L  N  V   L+ +YA C +   AR IF+ I++  VV +N +I +Y  +    +AL +++
Sbjct: 50  LRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYK 109

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
            +  +   P   T    L + +   SL +G  IH  + K GLD  + V   LI M+ KC 
Sbjct: 110 TMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCK 169

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
            L +A  V D +  +D  +W++M+  YA +G+ + ++ +  EM    + P++ T   LL 
Sbjct: 170 SLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLP 229

Query: 335 ACSHT 339
           A ++T
Sbjct: 230 AVTNT 234


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 196/542 (36%), Positives = 319/542 (58%), Gaps = 10/542 (1%)

Query: 21  TPNALSLLPRCTSFR--GLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLL 78
           T   LS L R +S +   LK+IHA+ ++T      ++LT+L+           M +A  +
Sbjct: 9   TKQMLSELLRASSSKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLV---VIGDMCYARQV 65

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
           FD + +P I L+NT+ +GY R++ P  ++ L+ ++ + G+ PD++++P ++KA + +G  
Sbjct: 66  FDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDF 125

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
           +   G  LH   +K G      V T L+ +Y +  ++ +A  +FE++    +V++NA + 
Sbjct: 126 SC--GFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLA 183

Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
              ++     AL  F ++    ++    T++S LS+C  LGSL++G+ I++  +K  +D 
Sbjct: 184 VCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDC 243

Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
            + V  A +DMH KCG  + A  +F+ M  ++  +WS MIV YA +G   +++ +F  M 
Sbjct: 244 NIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQ 303

Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM--RDKYGIVPGIKHYGCMVDLLGRAG 376
              + P+ +TFLG+L ACSH GLV+EG  YF  M   +   + P  +HY CMVDLLGR+G
Sbjct: 304 NEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSG 363

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSN 436
            L+EAY FI ++P++    +W  LL +C+ H ++ L ++V + + E     G  +V+LSN
Sbjct: 364 LLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSN 423

Query: 437 LCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDE 496
           + A AG+W+ VD +R  M+  G  KV   SS+E    +  F  GD  H  S  + + LDE
Sbjct: 424 IYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDE 483

Query: 497 LVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLR 556
           ++K+++ +GYVPDT  V H D+E EEKE +L +HSEKLAI FGL+   PG  IRV+KNLR
Sbjct: 484 ILKKIRKMGYVPDTCSVFH-DVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLR 542

Query: 557 VC 558
            C
Sbjct: 543 TC 544


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 194/507 (38%), Positives = 298/507 (58%), Gaps = 26/507 (5%)

Query: 52  DLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFV 111
           ++++ T LI+   +    +S   A  LFDR+ +  +V +  M  G  RS         F 
Sbjct: 225 EVSMTTALIDMYCKGGCLAS---AQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFN 281

Query: 112 ELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE 171
            +L   L P++ +  SL+  C  VG   L+ GK  H + ++ G   +L + T LI++Y +
Sbjct: 282 RMLEEKLFPNEITLLSLITECGFVGT--LDLGKWFHAYLLRNGFGMSLALVTALIDMYGK 339

Query: 172 CSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSA 231
           C  V  AR +F  + +  V  ++ +I+AYA  S  ++  +LF E+   ++KP +VTM+S 
Sbjct: 340 CGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSL 399

Query: 232 LSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDT 291
           LS CA  G+LDLGKW H YI ++GL+  V + TALI+M+AKCG +  A S+F+    +D 
Sbjct: 400 LSLCAEAGALDLGKWTHAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDI 459

Query: 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYS 351
           + W+ M+  ++ HG G +++ +F EM    V P++ITF+ + +ACSH+GL++        
Sbjct: 460 RMWNTMMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHACSHSGLME-------- 511

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
                       HYGC+VDLLGRAG LDEA+  I+ +P++   I+W  LL++C  H NL 
Sbjct: 512 ------------HYGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAACKLHKNLA 559

Query: 412 LAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVN 471
           L +    +I ELD  + G  V+ SN+ A A RW DV  +R+ M   G+ K PG S IEV+
Sbjct: 560 LGEVAARKILELDPQNCGYSVLKSNIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVS 619

Query: 472 NVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHS 531
             V  F SGD   + +T + + + E+  +L+  GY P+T+ V   ++++EEKE AL YHS
Sbjct: 620 GSVHHFKSGDKACTQTTKVYEMVTEMCIKLRESGYTPNTAAVLL-NIDEEEKESALSYHS 678

Query: 532 EKLAITFGLLNTPPGTTIRVVKNLRVC 558
           EKLA  FGL++T PGT IR+VKNLR+C
Sbjct: 679 EKLATAFGLISTAPGTPIRIVKNLRIC 705



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 224/447 (50%), Gaps = 20/447 (4%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           P+ L    + +S    +++H    K    +D+ V   L+N   +     S   A L+FD+
Sbjct: 92  PSLLKACAQASSGDLGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLVS---ARLVFDQ 148

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +PE D+V + TM   Y RSK    A+ L  E+   G+     +  SL+          ++
Sbjct: 149 MPERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFG--NLLDMK 206

Query: 142 EGKQLHCFAIKLGLNSNLYV--CTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
            G+ +H + ++   +  + V   T LI++Y +   + +A+R+F+ +S+  VVS+  +I  
Sbjct: 207 SGRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAG 266

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
             RS R +E    F  + E  L P ++T+LS ++ C  +G+LDLGKW H Y+ + G    
Sbjct: 267 CIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMS 326

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           + + TALIDM+ KCG++  A ++F+ +  KD + WS +I AYA      +   +F EM+ 
Sbjct: 327 LALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLN 386

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
             V P+ +T + LL  C+  G +D G W + Y   +++G+   +     ++++  + G +
Sbjct: 387 NDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYI--NRHGLEVDVILETALINMYAKCGDV 444

Query: 379 DEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD-----YVI 433
             A    +E  ++    +W T+++  S H   G  K+ +E   E+ +SHG +     +V 
Sbjct: 445 TIARSLFNE-AMQRDIRMWNTMMAGFSMH---GCGKEALELFSEM-ESHGVEPNDITFVS 499

Query: 434 LSNLCARAGRWEDVDYLRKLMKDRGVL 460
           + + C+ +G  E    L  L+   G L
Sbjct: 500 IFHACSHSGLMEHYGCLVDLLGRAGHL 526



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 192/368 (52%), Gaps = 19/368 (5%)

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELL-NSGLLPDDYSFPSLLKACACVGAEALE 141
           PE +   +N +   Y+ +  P  +   ++ +  N     D++  PSLLKACA   A + +
Sbjct: 51  PEAN---YNLLISSYTNNHLPQASFNCYLHMRSNDAAALDNFILPSLLKACA--QASSGD 105

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G++LH FA K G  S+++VC  L+N+Y +C  + +AR +F+ + E  VVS+  ++  Y 
Sbjct: 106 LGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYV 165

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           RS    EAL L RE+Q   +K + V ++S ++    L  +  G+ +H YI +   D+ ++
Sbjct: 166 RSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKME 225

Query: 262 VN--TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           V+  TALIDM+ K G L  A  +FD +S +   +W+ MI       +  +    F  M++
Sbjct: 226 VSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLE 285

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
            ++ P+EIT L L+  C   G +D G W + Y +R+ +G+   +     ++D+ G+ G++
Sbjct: 286 EKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLAL--VTALIDMYGKCGQV 343

Query: 379 DEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL--DDSHGGDYVILS- 435
             A    + +  K   I W  L+   S++ ++    QV     E+  +D    +  ++S 
Sbjct: 344 GYARALFNGVKKKDVKI-WSVLI---SAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSL 399

Query: 436 -NLCARAG 442
            +LCA AG
Sbjct: 400 LSLCAEAG 407


>gi|326525961|dbj|BAJ93157.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 615

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 200/532 (37%), Positives = 317/532 (59%), Gaps = 12/532 (2%)

Query: 35  RGLKQI---HAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFN 91
           RGL ++   H   IK  L      L  L+  C       SME+A  +F  + EP+   +N
Sbjct: 46  RGLDEVRKAHVANIKLGLDRSPPHLRPLLAACALGEWPGSMEYAAAIFATLDEPEAFDYN 105

Query: 92  TMARGYS-RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFA 150
           T+ RG+    + P  A+ L+V++L++ ++PD Y+FP +LKACA +   A  +G+QL   A
Sbjct: 106 TLMRGHVVGGRDPAAALRLYVDMLHNDVVPDGYTFPFVLKACAQL--LAFRQGRQLQGHA 163

Query: 151 IKLG-LNSNLYVCTTLINLYAECSDVEAARRIFENI--SEPCVVSYNAIITAYARSSRPN 207
           +KLG L  + +   +LI+ Y +C + E ARR FE +   E    S++A++ AY ++ R  
Sbjct: 164 MKLGFLEHDEHAQNSLISFYGKCGEPELARRAFEQMEAGERTAASWSALLAAYTKAGRWA 223

Query: 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267
           + L  F  +     +P + +M+SALS+CA LG+ D+G+ +H  + +  +     + T+L+
Sbjct: 224 DCLESFGAMVRDGWRPDESSMVSALSACAHLGAYDVGRSVHGALLRNTVTLNTFMETSLV 283

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQ-AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           DM+AKCG ++ A +VFD M GK  +  +SAM+   A HG G K++ +F+ M+     PDE
Sbjct: 284 DMYAKCGCIEKATAVFDGMDGKKNEWTYSAMVSGLALHGDGRKALKVFDAMISEGHKPDE 343

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
             ++G+L ACS +GL++EG   F  MR +  + P  +HYGCMVDL+ RAGR+DEA   I 
Sbjct: 344 AVYVGVLNACSRSGLLEEGLRCFDRMRLERKVAPNAQHYGCMVDLMARAGRMDEARELIG 403

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS-HGGDYVILSNLCARAGRWE 445
            +P   T   WR+LL++C  H ++ LA + ++ +  L  + + GDY+IL+++ A+A  WE
Sbjct: 404 SMPTGPTDTAWRSLLNACRIHGDIELADRALQELARLGGAVNAGDYIILADMHAKAKNWE 463

Query: 446 DVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVG 505
           +   LR     RG+ + PG S++EV+  +  F S D  H  + D+ + L ++  +L+  G
Sbjct: 464 EAVALRTEAVHRGLAQAPGFSAVEVHGKMHRFTSQDRSHPRTADIYEMLHQMEWQLRFEG 523

Query: 506 YVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRV 557
           Y PDTS V   + +DEEK  A+  HS+KLA+ FGLL+TP GT +RVV NLR+
Sbjct: 524 YKPDTSEVAL-EADDEEKRRAVAAHSQKLAMAFGLLSTPEGTPVRVVTNLRM 574


>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 682

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 201/535 (37%), Positives = 305/535 (57%), Gaps = 6/535 (1%)

Query: 24  ALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           A+S      S+   +Q H   +K        V   ++    Q    + ME A  +F+ + 
Sbjct: 114 AVSATANVRSYDMGRQCHGYAVKAGFAEQRYVFNAVLYMYCQ---CAHMEDASKVFESVS 170

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
             D   FN+M  GY        ++ +   +       D  S+ ++L  CA +    L  G
Sbjct: 171 GFDAFAFNSMINGYLDRGQLDGSLGIVRNMTGEAEKWDYVSYVAVLGHCASMKDSVL--G 228

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
            Q+H  A+K  L  N+YV + L+++Y +C  V  A R FE + E  VVS+ A++TAY ++
Sbjct: 229 AQVHAQALKKRLELNVYVGSALVDMYGKCDHVHDANRAFEVLPEKNVVSWTAVMTAYTQN 288

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
               +AL LF +++   ++P + T   AL+SCA L +L  G  +   + K G   ++ V+
Sbjct: 289 ELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGLAALRTGNALGACVMKTGHWDHLLVS 348

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
            AL++M++K G ++DA  VF +M  +D  +W+ +I  YA HG   + +  F  M+ A V 
Sbjct: 349 NALMNMYSKSGSIEDAHRVFISMPLRDVVSWNLIITGYAHHGLAREGMEAFHSMLSAAVI 408

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
           P  +TF+G+L AC+  GLVDE + Y  +M  + GI PG +HY CMV LL R GRLDEA R
Sbjct: 409 PSYVTFVGVLSACAQLGLVDEAFYYLNTMMKEVGITPGKEHYTCMVGLLCRVGRLDEAER 468

Query: 384 FIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443
           FI    I +  + WR+LL+SC  + N GL  +V E+I +L+ S  G YV+LSN+ A+A R
Sbjct: 469 FIVNNCIGTDVVAWRSLLNSCQVYKNYGLGHRVAEQILQLEPSDVGTYVLLSNMYAKANR 528

Query: 444 WEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKM 503
           W+ V  +RK M++R V K PG S I V + V  F S + VH     + K L+EL+ ++K 
Sbjct: 529 WDGVVKVRKHMRERAVRKSPGVSWIHVGSDVHVFTSEEKVHPQMDQIAKKLEELIDQIKA 588

Query: 504 VGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +GYVP+ ++V H D++DE KE  L YHSEKLA+ FGL++TP G TI ++KNLR+C
Sbjct: 589 IGYVPNFAVVLH-DIDDERKEEHLMYHSEKLALAFGLIHTPKGATIHIMKNLRIC 642



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 130/264 (49%), Gaps = 6/264 (2%)

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
           L +GK LH   I    + ++ +   LI+ YA+C  V  AR +F+ +     VS N +++ 
Sbjct: 27  LSKGKALHARLITAA-HFDVVLHNNLISFYAKCGRVGLARTVFDAMPFRNAVSANLLMSG 85

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
           YA S R  E+L L R +   +    +  + +A+S+ A + S D+G+  H Y  K G  + 
Sbjct: 86  YASSGRHKESLQLLRVV---DFGMNEYVLSAAVSATANVRSYDMGRQCHGYAVKAGFAEQ 142

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
             V  A++ M+ +C  ++DA  VF+++SG D  A+++MI  Y   GQ   S+ +   M  
Sbjct: 143 RYVFNAVLYMYCQCAHMEDASKVFESVSGFDAFAFNSMINGYLDRGQLDGSLGIVRNMTG 202

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
                D ++++ +L  C+       G    ++   K  +   +     +VD+ G+   + 
Sbjct: 203 EAEKWDYVSYVAVLGHCASMKDSVLGAQ-VHAQALKKRLELNVYVGSALVDMYGKCDHVH 261

Query: 380 EAYRFIDELPIKSTPILWRTLLSS 403
           +A R  + LP K+  + W  ++++
Sbjct: 262 DANRAFEVLPEKNV-VSWTAVMTA 284


>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 568

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 188/507 (37%), Positives = 299/507 (58%), Gaps = 39/507 (7%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           ++ L  C     LK+IHA  +K  L     ++TK+++ C        + +A LLF ++  
Sbjct: 14  ITSLKNCFKITQLKKIHAHVVKLSLSQSNFLVTKMLDSC---DNLGHVSYATLLFKQLLH 70

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLN---SGLLPDDYSFPSLLKACACVGAEALE 141
           P+I  +N + R Y+ ++    AI +FV++L    + + PD ++FP ++K+C  +    L 
Sbjct: 71  PNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRL- 129

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G Q+H    K G + +      LI++Y +  D+  A ++FE +S   V+S+N++I  Y 
Sbjct: 130 -GMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYV 188

Query: 202 RSSRPN-------------------------------EALSLFRELQERNLKPTDVTMLS 230
           +  + N                               +AL +FRE+Q   ++P ++++++
Sbjct: 189 KLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIA 248

Query: 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290
            L +CA LG+L++GKWIH Y  K G  +   +  ALI+M+AKCG +D+A ++FD +  KD
Sbjct: 249 VLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKD 308

Query: 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350
             +WS MI   A HG+G+++I +FEEM K +V+P+EITFLG+L ACSHTGL DEG  YF 
Sbjct: 309 VISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFD 368

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
            M   Y I P I+HYGC++DLLGR+G L +A   I ++PIK    +W +LLSSC  H NL
Sbjct: 369 VMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRIHRNL 428

Query: 411 GLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEV 470
            +A   ++++ EL+    G+YV+L+N+ A  G+WEDV  +RKL++++ + K PG SSIEV
Sbjct: 429 QIAVIAVKQLMELEPEESGNYVLLANMYAEHGKWEDVSNIRKLIRNKRIKKTPGSSSIEV 488

Query: 471 NNVVREFFSGDGVHSYSTDLQKALDEL 497
           NNVV+EF S D    +S ++   L+ L
Sbjct: 489 NNVVQEFVSSDDSKPFSQEVFWILEGL 515


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 196/536 (36%), Positives = 315/536 (58%), Gaps = 9/536 (1%)

Query: 26  SLLPRCTS---FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  C     F   K +H    KT    +L V  +LI+   +   +  ++ A  +F+ +
Sbjct: 251 SVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIK---SGDVDDALQVFEEM 307

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           P+ D++ ++ M   Y++S+    AI +F  +    +LP+ ++  SLL+ACA +    L+ 
Sbjct: 308 PKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASL--VDLQL 365

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G Q+HC  +K+GL+ N++V   L+++YA+C  +E + ++F        VS+N +I  Y +
Sbjct: 366 GNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQ 425

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
           +    +AL LF+++ E  ++ T+VT  S L +CA + +L+ G  IH    K   DK   V
Sbjct: 426 AGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVV 485

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
             ALIDM+AKCG + DA  VFD +   D  +W+AMI  Y+ HG   +++  FE M++ + 
Sbjct: 486 GNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETEC 545

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            PD++TF+G+L ACS+ GL+D G  YF SM ++Y I P  +HY CMV LLGR+G LD+A 
Sbjct: 546 KPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAA 605

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
           + + E+P + + ++WR LLS+C  HN++ L +   +R+ E++      +V+LSN+ A A 
Sbjct: 606 KLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIYANAR 665

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           RW +V  +R  MK +G+ K PG S IE    V  F  GD  H  +  +   L+ L  + +
Sbjct: 666 RWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHPDTKLINGMLEWLNMKAR 725

Query: 503 MVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             GYVPD S V   D+ED +KE  L  HSE+LA+ +GL+ TP  + +R++KNLR+C
Sbjct: 726 NEGYVPDFSSVLL-DVEDVDKEQRLWVHSERLALAYGLIRTPSISPLRIIKNLRIC 780



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 113/365 (30%), Positives = 178/365 (48%), Gaps = 9/365 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K +H   IK     DL     L+NF  +     S+  A  LFD +P+ + V F T+ +GY
Sbjct: 64  KYLHCEIIKKGNCLDLFANNILLNFYVK---YDSLPDAAKLFDEMPDRNTVSFVTLIQGY 120

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           S+      AI LF  L   G   + + F ++LK    V AE  + G  +H    KLG +S
Sbjct: 121 SQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLL--VSAEWAKLGFSVHACVYKLGFDS 178

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           + +V T LI+ Y+ C   E AR++F+ I    +VS+  ++  Y  +    E+L LF  ++
Sbjct: 179 DAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMR 238

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
               KP + T  S L +C  L   ++GK +H    K    + + V   LID++ K G +D
Sbjct: 239 IVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVD 298

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           DA+ VF+ M   D   WS MI  YA   Q  ++I MF  M +  V P++ T   LL AC+
Sbjct: 299 DALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACA 358

Query: 338 HTGLVD-EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
              LVD +  N  +    K G+   +     ++D+  + GR++ + +   E P   T + 
Sbjct: 359 --SLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESP-NCTDVS 415

Query: 397 WRTLL 401
           W T++
Sbjct: 416 WNTVI 420



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 14/287 (4%)

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           + Y + SLL++C   G  A   GK LHC  IK G   +L+    L+N Y +   +  A +
Sbjct: 43  NTYIYGSLLQSCIRNGDCA--TGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAK 100

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
           +F+ + +   VS+  +I  Y++  R +EA+ LF  LQ    +       + L        
Sbjct: 101 LFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEW 160

Query: 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVA 300
             LG  +H  + K G D    V TALID ++ CG  + A  VFD +  KD  +W+ M+  
Sbjct: 161 AKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVAC 220

Query: 301 YATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS-----HTGLVDEGWNYFYSMRDK 355
           Y  +    +S+ +F  M      P+  TF  +L AC      + G    G  +  S  ++
Sbjct: 221 YVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEE 280

Query: 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
             +  G++    ++DL  ++G +D+A +  +E+P K   I W  +++
Sbjct: 281 --LFVGVE----LIDLYIKSGDVDDALQVFEEMP-KDDVIPWSFMIA 320


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 192/524 (36%), Positives = 305/524 (58%), Gaps = 32/524 (6%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K +H++ IK+  +  +N    L++  ++      ++ A  +F+++ E ++V + +M  GY
Sbjct: 271 KAVHSLAIKSSFERRINFSNTLLDMYSK---CGDLDGALRVFEKMGERNVVSWTSMIAGY 327

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           +R      AI L  ++   G+  D  +  S+L ACA  G+  L+ GK +H +     + S
Sbjct: 328 TRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGS--LDNGKDVHDYIKANNMAS 385

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           NL+VC  L+++YA+C  +E A  +F  +    ++S+N ++                    
Sbjct: 386 NLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG------------------- 426

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              LKP   TM   L +CA L +L+ GK IH YI + G      V  AL+D++ KCG L 
Sbjct: 427 --ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLG 484

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            A  +FD +  KD  +W+ MI  Y  HG G+++I  F EM  A + PDE++F+ +LYACS
Sbjct: 485 LARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACS 544

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H+GL+++GW +FY M++ + I P ++HY CMVDLL R G L +AY+FI+ LPI     +W
Sbjct: 545 HSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIW 604

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             LL  C  ++++ LA++V ER+FEL+  + G YV+L+N+ A A + E+V  +R+ +  +
Sbjct: 605 GALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKREEVKRMREKIGKK 664

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDG-VHSYSTDLQKALDELVKELKMVGYVPDT--SLVH 514
           G+ K PGCS IE+   V  F SG+   H +S  ++  L ++ +++K  GY P T  +L++
Sbjct: 665 GLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALIN 724

Query: 515 HGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             +M   +KE+AL  HSEKLA+ FGLL  PP  TIRV KNLRVC
Sbjct: 725 ADEM---QKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVC 765



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 176/355 (49%), Gaps = 30/355 (8%)

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
           E A  LFD++ + D++ +N+M  GY  +    R + ++ +++  G+  D  +  S+L  C
Sbjct: 202 ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGC 261

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
           A  G  +L  GK +H  AIK      +    TL+++Y++C D++ A R+FE + E  VVS
Sbjct: 262 ANSGTLSL--GKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 319

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           + ++I  Y R    + A+ L +++++  +K   V + S L +CA  GSLD GK +H+YIK
Sbjct: 320 WTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIK 379

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
              +   + V  AL+DM+AKCG ++ A SVF  M  KD  +W+ M+              
Sbjct: 380 ANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV-------------- 425

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDL 371
                   ++ PD  T   +L AC+    ++ G   + Y +R+ Y     + +   +VDL
Sbjct: 426 -------GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVAN--ALVDL 476

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
             + G L  A    D +P K   + W  +++    H   G   + I    E+ D+
Sbjct: 477 YVKCGVLGLARLLFDMIPSKDL-VSWTVMIAGYGMH---GYGNEAIATFNEMRDA 527



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/279 (19%), Positives = 125/279 (44%), Gaps = 54/279 (19%)

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           ++ S+L+ CA  G ++L +GK++H       +  +  +   L++ YA C D++  RR+F+
Sbjct: 101 TYGSVLQLCA--GLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFD 158

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
            + +  V  +N +++ YA+     E++ LF+ + E+ ++                     
Sbjct: 159 TMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIE--------------------- 197

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303
           GK                             R + A  +FD +  +D  +W++MI  Y +
Sbjct: 198 GK-----------------------------RPESASELFDKLCDRDVISWNSMISGYVS 228

Query: 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK 363
           +G   + + ++++MM   +  D  T + +L  C+++G +  G    +S+  K      I 
Sbjct: 229 NGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLG-KAVHSLAIKSSFERRIN 287

Query: 364 HYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
               ++D+  + G LD A R  +++  ++  + W ++++
Sbjct: 288 FSNTLLDMYSKCGDLDGALRVFEKMGERNV-VSWTSMIA 325



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 2/133 (1%)

Query: 190 VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           V  YNA I  + +      A+ L    Q+  L+    T  S L  CA L SL  GK +H 
Sbjct: 66  VTDYNAKILHFCQLGDLENAMELVCMCQKSELETK--TYGSVLQLCAGLKSLTDGKKVHS 123

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
            IK   +     +   L+  +A CG L +   VFD M  K+   W+ M+  YA  G   +
Sbjct: 124 IIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKE 183

Query: 310 SILMFEEMMKAQV 322
           SI +F+ M++  +
Sbjct: 184 SICLFKIMVEKGI 196


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 195/548 (35%), Positives = 321/548 (58%), Gaps = 13/548 (2%)

Query: 13  PPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSM 72
           P     T+   A S LP   S    KQ+H   IK +  +D  V T LI+  ++N     M
Sbjct: 414 PDQYTMTSVLKAASSLPEGLSLS--KQVHVHAIKINNVSDSFVSTALIDAYSRN---RCM 468

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
           + A +LF+R    D+V +N M  GY++S    + + LF  +   G   DD++  ++ K C
Sbjct: 469 KEAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTC 527

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
             + A  + +GKQ+H +AIK G + +L+V + ++++Y +C D+ AA+  F++I  P  V+
Sbjct: 528 GFLFA--INQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVA 585

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +  +I+    +     A  +F +++   + P + T+ +   + + L +L+ G+ IH    
Sbjct: 586 WTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANAL 645

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           K        V T+L+DM+AKCG +DDA  +F  +   +  AW+AM+V  A HG+G +++ 
Sbjct: 646 KLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQ 705

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           +F++M    + PD++TF+G+L ACSH+GLV E + +  SM   YGI P I+HY C+ D L
Sbjct: 706 LFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADAL 765

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432
           GRAG + +A   I+ + ++++  ++RTLL++C    +    K+V  ++ EL+      YV
Sbjct: 766 GRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYV 825

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
           +LSN+ A A +W+++   R +MK   V K PG S IEV N +  F   D  +  +  + +
Sbjct: 826 LLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYR 885

Query: 493 ALDELVKELKMVGYVPDT--SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIR 550
            + ++++++K  GYVP+T  +LV   D+E+EEKE AL YHSEKLA+ FGLL+TPP T IR
Sbjct: 886 KVKDMIRDIKQEGYVPETDFTLV---DVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIR 942

Query: 551 VVKNLRVC 558
           V+KNLRVC
Sbjct: 943 VIKNLRVC 950



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 191/384 (49%), Gaps = 13/384 (3%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           +Q+H + +K  L   L V   LIN +C           A  +FD + E D++ +N++  G
Sbjct: 335 QQVHCMALKLGLDLMLTVSNSLINMYCK----LRKFGFARTVFDNMSERDLISWNSVIAG 390

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
            +++   + A+ LF++LL  GL PD Y+  S+LKA + +  E L   KQ+H  AIK+   
Sbjct: 391 IAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSL-PEGLSLSKQVHVHAIKINNV 449

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
           S+ +V T LI+ Y+    ++ A  +FE  +   +V++NA++  Y +S   ++ L LF  +
Sbjct: 450 SDSFVSTALIDAYSRNRCMKEAEILFERHNFD-LVAWNAMMAGYTQSHDGHKTLKLFALM 508

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
            ++  +  D T+ +   +C  L +++ GK +H Y  K G D  + V++ ++DM+ KCG +
Sbjct: 509 HKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDM 568

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
             A   FD++   D  AW+ MI     +G+  ++  +F +M    V PDE T   L  A 
Sbjct: 569 SAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKAS 628

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           S    +++G    ++   K            +VD+  + G +D+AY     + + +    
Sbjct: 629 SCLTALEQG-RQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITA- 686

Query: 397 WRTLLSSCSSHN----NLGLAKQV 416
           W  +L   + H      L L KQ+
Sbjct: 687 WNAMLVGLAQHGEGKETLQLFKQM 710



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 151/297 (50%), Gaps = 8/297 (2%)

Query: 110 FVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLY 169
           F +++ S +  D  +F  +L     V  ++L  G+Q+HC A+KLGL+  L V  +LIN+Y
Sbjct: 303 FADMVESDVECDQVTF--ILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMY 360

Query: 170 AECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTML 229
            +      AR +F+N+SE  ++S+N++I   A++    EA+ LF +L    LKP   TM 
Sbjct: 361 CKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMT 420

Query: 230 SALSSCALL-GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG 288
           S L + + L   L L K +H +  K        V+TALID +++   + +A  +F+  + 
Sbjct: 421 SVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF 480

Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN- 347
            D  AW+AM+  Y     GHK++ +F  M K     D+ T   +   C     +++G   
Sbjct: 481 -DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQV 539

Query: 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSC 404
           + Y+++  Y +   +     ++D+  + G +  A    D +P+    + W T++S C
Sbjct: 540 HAYAIKSGYDLDLWVS--SGILDMYVKCGDMSAAQFAFDSIPVPD-DVAWTTMISGC 593



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 148/329 (44%), Gaps = 47/329 (14%)

Query: 9   ITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPT 68
           +T SP  KLC ++    +           +  H    K  L  D  V   L+N   +   
Sbjct: 146 MTLSPMLKLCLHSGYVWAS----------ESFHGYACKIGLDGDEFVAGALVNIYLK--- 192

Query: 69  TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSL 128
              ++   +LF+ +P  D+VL+N M + Y        AI L     +SGL P++ +    
Sbjct: 193 FGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEIT---- 248

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP 188
           L+  A +  +  + G+                     +  +A  +D  +       +SE 
Sbjct: 249 LRLLARISGDDSDAGQ---------------------VKSFANGNDASS-------VSE- 279

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
            ++  N  ++ Y  S + +  L  F ++ E +++   VT +  L++   + SL LG+ +H
Sbjct: 280 -IIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVH 338

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
               K GLD  + V+ +LI+M+ K  +   A +VFDNMS +D  +W+++I   A +G   
Sbjct: 339 CMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEV 398

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACS 337
           +++ +F ++++  + PD+ T   +L A S
Sbjct: 399 EAVCLFMQLLRCGLKPDQYTMTSVLKAAS 427



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 99/192 (51%), Gaps = 5/192 (2%)

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           GK  H   +    N   ++   LI++Y++C  +  ARR+F+ + +  +VS+N+I+ AYA+
Sbjct: 58  GKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQ 117

Query: 203 SSR-----PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
           SS        +A  LFR L++  +  + +T+   L  C   G +   +  H Y  K GLD
Sbjct: 118 SSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLD 177

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
               V  AL++++ K G++ +   +F+ M  +D   W+ M+ AY   G   ++I +    
Sbjct: 178 GDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAF 237

Query: 318 MKAQVSPDEITF 329
             + ++P+EIT 
Sbjct: 238 HSSGLNPNEITL 249



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 7/173 (4%)

Query: 61  NFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPI-----RAIFLFVELLN 115
           N  +      S+ +A  +FD++P+ D+V +N++   Y++S   +     +A  LF  L  
Sbjct: 79  NLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQ 138

Query: 116 SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDV 175
             +     +   +LK C   G     E    H +A K+GL+ + +V   L+N+Y +   V
Sbjct: 139 DVVYTSRMTLSPMLKLCLHSGYVWASES--FHGYACKIGLDGDEFVAGALVNIYLKFGKV 196

Query: 176 EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTM 228
           +  + +FE +    VV +N ++ AY       EA+ L        L P ++T+
Sbjct: 197 KEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITL 249


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 191/524 (36%), Positives = 304/524 (58%), Gaps = 32/524 (6%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K +H++ IK+  +  +N    L++  ++      ++ A  +F+++ E ++V + +M  GY
Sbjct: 271 KAVHSLAIKSTFERRINFSNTLLDMYSK---CGDLDGALRVFEKMGERNVVSWTSMIAGY 327

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           +R      AI L  ++   G+  D  +  S+L ACA  G+  L+ GK +H +     + S
Sbjct: 328 TRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGS--LDNGKDVHDYIKANNMES 385

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           NL+VC  L+++Y +C  ++ A  +F  +    ++S+N +I                    
Sbjct: 386 NLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIG------------------- 426

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              LKP   TM   L +CA L +L+ GK IH YI + G      V  AL+D++ KCG L 
Sbjct: 427 --ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLG 484

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            A  +FD +  KD  +W+ MI  Y  HG G+++I  F EM  A + PDE++F+ +LYACS
Sbjct: 485 LARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACS 544

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H+GL+++GW +FY M++ + I P ++HY CMVDLL R G L +AY FI+ LPI     +W
Sbjct: 545 HSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIW 604

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             LL  C  ++++ LA++V ER+FEL+  + G YV+L+N+ A A +WE+V  +R+ +  +
Sbjct: 605 GALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKK 664

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDG-VHSYSTDLQKALDELVKELKMVGYVPDT--SLVH 514
           G+ K PGCS IE+   V  F SG+   H +S  ++  L ++ +++K  GY P T  +L++
Sbjct: 665 GLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALIN 724

Query: 515 HGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             +M   +KE+AL  HSEKLA+ FGLL  PP  T+RV KNLRVC
Sbjct: 725 ADEM---QKEMALCGHSEKLAMAFGLLALPPRKTVRVTKNLRVC 765



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 176/355 (49%), Gaps = 30/355 (8%)

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
           E A  LFD++ + D++ +N+M  GY  +    R + ++ +++  G+  D  +  S+L  C
Sbjct: 202 ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGC 261

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
           A  G  +L  GK +H  AIK      +    TL+++Y++C D++ A R+FE + E  VVS
Sbjct: 262 ANSGTLSL--GKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 319

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           + ++I  Y R  R + A+ L +++++  +K   V   S L +CA  GSLD GK +H+YIK
Sbjct: 320 WTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIK 379

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
              ++  + V  AL+DM+ KCG +D A SVF  M  KD  +W+ MI              
Sbjct: 380 ANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMI-------------- 425

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDL 371
                   ++ PD  T   +L AC+    ++ G   + Y +R+ Y     + +   +VDL
Sbjct: 426 -------GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVAN--ALVDL 476

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
             + G L  A    D +P K   + W  ++S    H   G   + I    E+ D+
Sbjct: 477 YVKCGVLGLARLLFDMIPSKDL-VSWTVMISGYGMH---GYGNEAIATFNEMRDA 527



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/279 (20%), Positives = 127/279 (45%), Gaps = 54/279 (19%)

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           ++ S+L+ CA  G+++L +GK++H       +  +  +   L++LYA C D++  RR+F+
Sbjct: 101 TYSSVLQLCA--GSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFD 158

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
            + +  V  +N +++ YA+     E++ LF+ + E+ ++                     
Sbjct: 159 TMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIE--------------------- 197

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303
           GK                             R + A  +FD +  +D  +W++MI  Y +
Sbjct: 198 GK-----------------------------RPESASELFDKLCDRDVISWNSMISGYVS 228

Query: 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK 363
           +G   + + ++++MM   +  D  T + +L  C+++G +  G    +S+  K      I 
Sbjct: 229 NGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLG-KAVHSLAIKSTFERRIN 287

Query: 364 HYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
               ++D+  + G LD A R  +++  ++  + W ++++
Sbjct: 288 FSNTLLDMYSKCGDLDGALRVFEKMGERNV-VSWTSMIA 325



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 2/133 (1%)

Query: 190 VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           V  YNA I  + +      A+ L    Q+  L+    T  S L  CA   SL  GK +H 
Sbjct: 66  VTDYNAKILHFCQLGNLENAMELVCMCQKSELETK--TYSSVLQLCAGSKSLTDGKKVHS 123

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
            IK   +     +   L+ ++A CG L +   VFD M  K+   W+ M+  YA  G   +
Sbjct: 124 IIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKE 183

Query: 310 SILMFEEMMKAQV 322
           SI +F+ M++  +
Sbjct: 184 SICLFKIMVEKGI 196


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 199/537 (37%), Positives = 311/537 (57%), Gaps = 11/537 (2%)

Query: 26  SLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           SL+  C     LK    +H   +   L ND+ VLT  ++  ++      +E A  +F ++
Sbjct: 236 SLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSK---MGDIESARWVFYKM 292

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           P  ++V +N M  G  R+     +  LF  L+ S    D  +  SLL+ C+     +L  
Sbjct: 293 PTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCS--QTASLAT 350

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           GK LH  AI+    SNL + T +++LY++C  ++ A  +F  + +  V+++ A++   A+
Sbjct: 351 GKILHGCAIR-SFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQ 409

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
           +    +AL LF ++QE  +    VT +S + SCA LGSL  G+ IH ++ + G    +  
Sbjct: 410 NGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVN 469

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
            TAL+DM+AKCG+++ A  +F + S  KD   W++MI  Y  HG G++++ ++ +M++  
Sbjct: 470 MTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEG 529

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           + P++ TFL LL ACSH+ LV++G + F SM   + I P  KHY C+VDLL RAGR +EA
Sbjct: 530 LKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEA 589

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
              I+++P +    +   LLS C +H N+ L  Q  +++  LD  + G Y++LSN+ A A
Sbjct: 590 QALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEA 649

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
            RW+ VDY+R LM++RG+ K PG S +E  N V  FF+GD  H    ++   L+ L   +
Sbjct: 650 RRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFLESLRSAV 709

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +  GYVPDTS V   D+++E K   L  HSE+LAI FGLL TP G+ IR+ KNLRVC
Sbjct: 710 ETSGYVPDTSCVLR-DVDEEMKVRMLWGHSERLAIAFGLLTTPAGSLIRITKNLRVC 765



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 168/339 (49%), Gaps = 6/339 (1%)

Query: 8   PITQSPPPKLCTNTPNALSLLPRCT-SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQN 66
           P+      +L T   N LSLL   + +   +K  HA  I   L  D  V TKL+   +  
Sbjct: 18  PLKDGQFNQLPTIIHNFLSLLRESSKNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSD- 76

Query: 67  PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFP 126
               S+E A  +FD+  +P  +L N M  GY +S      + LF  + +  L  D  S  
Sbjct: 77  --LRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCT 134

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS 186
             LKACA   +   E G ++   A++ G+  N +V +++I+   +   +  A+R+F+ + 
Sbjct: 135 FALKACA--SSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMP 192

Query: 187 EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW 246
              VV +N+II  Y ++   + A  LF E+    +KP+ +TM S + +C  +G+L LGK 
Sbjct: 193 NKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKC 252

Query: 247 IHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ 306
           +H Y+   GL   + V T+ +DM++K G ++ A  VF  M  ++  +W+AMI     +G 
Sbjct: 253 MHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGL 312

Query: 307 GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
             +S  +F  ++++    D  T + LL  CS T  +  G
Sbjct: 313 VGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATG 351


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 187/521 (35%), Positives = 300/521 (57%), Gaps = 8/521 (1%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           Q+HA+ +++    ++ V   L++F ++      M     LFD +PE D V +N +   Y+
Sbjct: 257 QVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRR---LFDEMPERDNVSYNVIIAAYA 313

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
            ++     + LF E+   G       + ++L     +    +  GKQ+H   + LGL S 
Sbjct: 314 WNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSL--PDVHIGKQIHAQLVLLGLASE 371

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
             +   LI++Y++C  ++AA+  F N SE   +S+ A+IT Y ++ +  EAL LF +++ 
Sbjct: 372 DLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRR 431

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
             L+P   T  S + + + L  + LG+ +H Y+ + G    V   + L+DM+AKCG LD+
Sbjct: 432 AGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDE 491

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A+  FD M  +++ +W+A+I AYA +G+   +I MFE M+    +PD +TFL +L ACSH
Sbjct: 492 ALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSH 551

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
            GL DE   YF+ M+ +Y I P  +HY C++D LGR G   +  + + E+P K+ PI+W 
Sbjct: 552 NGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWT 611

Query: 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458
           ++L SC  H N  LA+   +++F ++ +    YVILSN+ ARAG+WED   ++K+M+DRG
Sbjct: 612 SILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRG 671

Query: 459 VLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDM 518
           V K  G S +E+   +  F S D       +++  LD L KE+   GY PD +   H  M
Sbjct: 672 VRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALH--M 729

Query: 519 EDEEKEI-ALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            D E ++ +L+YHSE+LAI F L+NTP GT IR++KNL  C
Sbjct: 730 VDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTAC 770



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 119/396 (30%), Positives = 197/396 (49%), Gaps = 17/396 (4%)

Query: 28  LPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPD 86
           LP CT    +  +H   IK  L   + V   L++ +C      +    A  +F  + + D
Sbjct: 149 LPGCT----VPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAA----ARRVFLEMHDKD 200

Query: 87  IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQL 146
            V +N M  G S+     +A+ LF  +  +G+    ++F S+L   A  G   L  G Q+
Sbjct: 201 AVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAA--GMAHLLLGHQV 258

Query: 147 HCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRP 206
           H   ++     N++V  +L++ Y++C  ++  RR+F+ + E   VSYN II AYA +   
Sbjct: 259 HALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCA 318

Query: 207 NEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
              L LFRE+Q+       +   + LS    L  + +GK IH  +   GL     +  AL
Sbjct: 319 ATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNAL 378

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           IDM++KCG LD A S F N S K   +W+A+I  Y  +GQ  +++ +F +M +A + PD 
Sbjct: 379 IDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDR 438

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
            TF  ++ A S   ++  G    +S   + G    +     +VD+  + G LDEA R  D
Sbjct: 439 ATFSSIIKASSSLAMIGLG-RQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFD 497

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
           E+P +++ I W  ++   S++ + G AK  I ++FE
Sbjct: 498 EMPERNS-ISWNAVI---SAYAHYGEAKNAI-KMFE 528



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 112/236 (47%), Gaps = 10/236 (4%)

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
           + N++    +++ Y+   D+ AA+ +F +       ++  ++ A+A + R ++ALSLFR 
Sbjct: 71  HKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRA 130

Query: 216 LQERNLKPTDVTMLSALS--SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273
           +    + P  VT+ + L+   C +         +H +  K+GLD +V V   L+D + K 
Sbjct: 131 MLGEGVIPDRVTVTTVLNLPGCTVPS-------LHPFAIKFGLDTHVFVCNTLLDAYCKH 183

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
           G L  A  VF  M  KD   ++AM++  +  G   +++ +F  M +A +     TF  +L
Sbjct: 184 GLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSIL 243

Query: 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389
              +    +  G +  +++  +   V  +     ++D   +   LD+  R  DE+P
Sbjct: 244 TVAAGMAHLLLG-HQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMP 298


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 207/541 (38%), Positives = 327/541 (60%), Gaps = 15/541 (2%)

Query: 27  LLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           L+  CT    L   +++H   ++     D  + TKLIN  +      S+++A  +FD+  
Sbjct: 76  LILSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKLINMYS---FFDSIDNARKVFDKTR 132

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEA---- 139
              I ++N + R  S +      + ++  + + G+  D +++  +LKAC  V +E     
Sbjct: 133 NRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKAC--VASECFVSL 190

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
           L +G+++H   ++ G +  +++ TTL+++YA+   V  A  +F  +    VVS++A+I  
Sbjct: 191 LNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIAC 250

Query: 200 YARSSRPNEALSLFREL--QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
           YA++ +  EAL LFREL  + ++L P  VTM+S L +CA L +L+ G+ IH YI + GLD
Sbjct: 251 YAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYILRKGLD 310

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
             + V +AL+ M+A+CG+L+    VFD M  +D  +W+++I +Y  HG G K+I +FEEM
Sbjct: 311 SILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEM 370

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
               V P  I+F+ +L ACSH GLVDEG   F SM   +GI P ++HY CMVDLLGRA R
Sbjct: 371 TYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANR 430

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437
           L+EA + I+ + I+  P +W +LL SC  H N+ LA++   R+F+L+ ++ G+YV+L+++
Sbjct: 431 LEEAAKIIENMRIEPGPKVWGSLLGSCRIHCNVELAERASIRLFDLEPTNAGNYVLLADI 490

Query: 438 CARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDEL 497
            A AG W+ V  ++KL++ RG+ KVPG S IEV   +  F S D V+     L   L +L
Sbjct: 491 YAEAGMWDGVKRVKKLLEARGLQKVPGRSWIEVKRKIYSFVSVDEVNPRMEQLHALLVKL 550

Query: 498 VKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRV 557
             ELK  GYVP T +V + D++  EKE  +  HSEKLA+ FGL+N+  G  IR+ K+LR+
Sbjct: 551 SMELKEEGYVPQTKVVLY-DLKAAEKERIVLGHSEKLAVAFGLINSSKGEVIRITKSLRL 609

Query: 558 C 558
           C
Sbjct: 610 C 610



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 104/234 (44%), Gaps = 13/234 (5%)

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           N +I +  +     +AL    EL      P   T    + SC    SL   + +H ++ +
Sbjct: 43  NKLIQSLCKQGNLTQAL----ELLSLEPNPAQHTYELLILSCTHQNSLLDAQRVHRHLLE 98

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
            G D+   + T LI+M++    +D+A  VFD    +    ++A+  A +  G G + + M
Sbjct: 99  NGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNM 158

Query: 314 FEEMMKAQVSPDEITFLGLLYAC----SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369
           +  M    +  D  T+  +L AC        L+++G    ++   ++G    +     +V
Sbjct: 159 YRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKG-REIHAHILRHGYDGYVHIMTTLV 217

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
           D+  + G +  A    +++P+K+  + W  ++ +C + N  G A + +E   EL
Sbjct: 218 DMYAKFGCVSNASCVFNQMPVKNV-VSWSAMI-ACYAKN--GKAFEALELFREL 267


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 187/521 (35%), Positives = 300/521 (57%), Gaps = 8/521 (1%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           Q+HA+ +++    ++ V   L++F ++      M     LFD +PE D V +N +   Y+
Sbjct: 257 QVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRR---LFDEMPERDNVSYNVIIAAYA 313

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
            ++     + LF E+   G       + ++L     +    +  GKQ+H   + LGL S 
Sbjct: 314 WNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSL--PDVHIGKQIHAQLVLLGLASE 371

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
             +   LI++Y++C  ++AA+  F N SE   +S+ A+IT Y ++ +  EAL LF +++ 
Sbjct: 372 DLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRR 431

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
             L+P   T  S + + + L  + LG+ +H Y+ + G    V   + L+DM+AKCG LD+
Sbjct: 432 AGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDE 491

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A+  FD M  +++ +W+A+I AYA +G+   +I MFE M+    +PD +TFL +L ACSH
Sbjct: 492 ALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSH 551

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
            GL DE   YF+ M+ +Y I P  +HY C++D LGR G   +  + + E+P K+ PI+W 
Sbjct: 552 NGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWT 611

Query: 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458
           ++L SC  H N  LA+   +++F ++ +    YVILSN+ ARAG+WED   ++K+M+DRG
Sbjct: 612 SILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRG 671

Query: 459 VLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDM 518
           V K  G S +E+   +  F S D       +++  LD L KE+   GY PD +   H  M
Sbjct: 672 VRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALH--M 729

Query: 519 EDEEKEI-ALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            D E ++ +L+YHSE+LAI F L+NTP GT IR++KNL  C
Sbjct: 730 VDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTAC 770



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 119/396 (30%), Positives = 197/396 (49%), Gaps = 17/396 (4%)

Query: 28  LPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPD 86
           LP CT    +  +H   IK  L   + V   L++ +C      +    A  +F  + + D
Sbjct: 149 LPGCT----VPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAA----ARRVFLEMHDKD 200

Query: 87  IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQL 146
            V +N M  G S+     +A+ LF  +  +G+    ++F S+L   A  G   L  G Q+
Sbjct: 201 AVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAA--GMAHLLLGHQV 258

Query: 147 HCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRP 206
           H   ++     N++V  +L++ Y++C  ++  RR+F+ + E   VSYN II AYA +   
Sbjct: 259 HALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCA 318

Query: 207 NEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
              L LFRE+Q+       +   + LS    L  + +GK IH  +   GL     +  AL
Sbjct: 319 ATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNAL 378

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           IDM++KCG LD A S F N S K   +W+A+I  Y  +GQ  +++ +F +M +A + PD 
Sbjct: 379 IDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDR 438

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
            TF  ++ A S   ++  G    +S   + G    +     +VD+  + G LDEA R  D
Sbjct: 439 ATFSSIIKASSSLAMIGLG-RQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFD 497

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
           E+P +++ I W  ++   S++ + G AK  I ++FE
Sbjct: 498 EMPERNS-ISWNAVI---SAYAHYGEAKNAI-KMFE 528



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 112/236 (47%), Gaps = 10/236 (4%)

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
           + N++    +++ Y+   D+ AA+ +F +       ++  ++ A+A + R ++ALSLFR 
Sbjct: 71  HKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRA 130

Query: 216 LQERNLKPTDVTMLSALS--SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273
           +    + P  VT+ + L+   C +         +H +  K+GLD +V V   L+D + K 
Sbjct: 131 MLGEGVIPDRVTVTTVLNLPGCTVPS-------LHPFAIKFGLDTHVFVCNTLLDAYCKH 183

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
           G L  A  VF  M  KD   ++AM++  +  G   +++ +F  M +A +     TF  +L
Sbjct: 184 GLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSIL 243

Query: 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389
              +    +  G +  +++  +   V  +     ++D   +   LD+  R  DE+P
Sbjct: 244 TVAAGMAHLLLG-HQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMP 298


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 191/493 (38%), Positives = 304/493 (61%), Gaps = 9/493 (1%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL--NSGLLPDDYSFPSLL 129
           ++ A   F+ +   + V +N M   Y        A+ LF E+   +    PD +SF   +
Sbjct: 82  LDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMCERSRSARPDKFSFSIAI 141

Query: 130 KACACVGAEALEEGKQLHCFAIKLG--LNSNLYVCTTLINLYAECSDVEAARRIFENISE 187
           +AC+ +  E LE+G+++H    + G  L+ ++ V T L+N+Y++C D+E AR++F++I  
Sbjct: 142 EACSNL--EDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARKVFDSIRH 199

Query: 188 PC-VVSYNAIITAYARSSRPNEALSLFRELQER-NLKPTDVTMLSALSSCALLGSLDLGK 245
               V +NA+I AYA+  R  +AL L+R + +  +L P   T ++ +  CA L +L  G+
Sbjct: 200 DADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGR 259

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
            IH  ++    D  + V+ AL+ M+ KCG LD+A+ VF +M  KD  +W+ +I +YA HG
Sbjct: 260 AIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHG 319

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY 365
              +++L+++EM    V P E+TF+GLL ACSH GLV +G +YFY M+D + I P + H+
Sbjct: 320 HSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHF 379

Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
           GC++DLLGR GRL EA   +  +PI++  + W +LL +C +H +L    +  +++ +   
Sbjct: 380 GCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVP 439

Query: 426 SHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHS 485
              G YV+LSN+ A AGRW+DV+ +RK+M  RGV K PG S IE+ +VV EF SGD  H 
Sbjct: 440 WTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDRSHP 499

Query: 486 YSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPP 545
              ++   L ++V+E+K +GYVPDTS V H   E+E++++ +  HSEKLAI +G +  P 
Sbjct: 500 QGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKEDLLV-CHSEKLAIVYGNMVVPG 558

Query: 546 GTTIRVVKNLRVC 558
            + +R+VKNLRVC
Sbjct: 559 KSMLRIVKNLRVC 571



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/319 (31%), Positives = 176/319 (55%), Gaps = 8/319 (2%)

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           +S +     A+  F  +  SG  PD  +F  +L A A +GA A+++G+++H +A   GL 
Sbjct: 4   FSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLL 63

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            N+ V T +I++Y +C  ++ AR  FE +     V++NA++T Y    R  EAL LFRE+
Sbjct: 64  PNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREM 123

Query: 217 QE--RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG--LDKYVKVNTALIDMHAK 272
            E  R+ +P   +   A+ +C+ L  L+ G+ IHE +++ G  L K V V TAL++M++K
Sbjct: 124 CERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSK 183

Query: 273 CGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQGHKSILMFEEMMK-AQVSPDEITFL 330
           CG L++A  VFD++    D+  W+AMI AYA HG+G +++ ++  M     ++P + TF+
Sbjct: 184 CGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFV 243

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
            ++  C+    + +G      +R        +     +V + G+ G LDEA      + +
Sbjct: 244 TVIDVCAELSALKQGRAIHARVR-ATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKL 302

Query: 391 KSTPILWRTLLSSCSSHNN 409
           K   I W T++SS + H +
Sbjct: 303 KD-EISWNTIISSYAYHGH 320



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 129/258 (50%), Gaps = 23/258 (8%)

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL--SSCALLGSLDLGKWIHEYIKKY 254
           + A++ +   +EAL  FR + +   +P  VT    L   +     ++D G+ IH Y +  
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
           GL   V V TA+I M+ KCGRLDDA + F+ +  K++  W+AM+  Y   G+  +++ +F
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120

Query: 315 EEMMKAQVS--PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG------IVPGIKHYG 366
            EM +   S  PD+ +F   + ACS+   +++G    + M  + G      +V G     
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQG-REIHEMLRREGKELHKDVVVGT---- 175

Query: 367 CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
            ++++  + G L+EA +  D +   +  + W  ++++ + H   G  KQ ++    + D+
Sbjct: 176 ALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQH---GRGKQALDLYRSMHDT 232

Query: 427 -----HGGDYVILSNLCA 439
                  G +V + ++CA
Sbjct: 233 TDLAPKQGTFVTVIDVCA 250


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 196/505 (38%), Positives = 283/505 (56%), Gaps = 36/505 (7%)

Query: 89  LFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQL-- 146
           L N + R  + S  P  A+ L+  LL +G  P  ++ PSLLK+ A   A     G  L  
Sbjct: 173 LHNALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARGLALAV 232

Query: 147 HCFAIKLGLNSNLYVCT--------------------------------TLINLYAECSD 174
           H  A+KLGL   L V                                  TLI  YA    
Sbjct: 233 HAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGR 292

Query: 175 VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSS 234
           V  AR +F+ +     VS++A++  Y ++    EAL LF  +Q   ++P D  ++  L++
Sbjct: 293 VTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAA 352

Query: 235 CALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAW 294
           CA LG L+ GKW+H Y+K   +   V + TAL+DM+AKCG +  A+ VF  M  K+  AW
Sbjct: 353 CAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAW 412

Query: 295 SAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD 354
           + MI   A HG+G +++ +F +M +  V PD+I F+G L AC+HTGLVD+G   F SM  
Sbjct: 413 TTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVR 472

Query: 355 KYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAK 414
           KYGI P I+HYGCMVDLL R G L+EA   ++++P+K   ++W  L++ C  H N+ LA+
Sbjct: 473 KYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAE 532

Query: 415 QVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVV 474
            V++   EL+    G YV+L N+ A +GR      +R LM+++GV K PGCS++E+  V+
Sbjct: 533 YVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVI 592

Query: 475 REFFSGDGVHSYSTDLQKALDELVKELKM-VGYVPDTSLVHHGDMEDEEKEIALRYHSEK 533
            +F  GD  H +  ++    DE+   +++  GYVPD   V   D+E+EEKE AL  HSEK
Sbjct: 593 HQFIVGDLSHPFIEEILSKWDEIDSRIRLEEGYVPDKKEVLL-DIEEEEKENALSRHSEK 651

Query: 534 LAITFGLLNTPPGTTIRVVKNLRVC 558
           +AI F L+NT     IR+VKNLRVC
Sbjct: 652 MAIAFALINTSDDMPIRIVKNLRVC 676



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 168/362 (46%), Gaps = 43/362 (11%)

Query: 13  PPPKLCTNTPNALSLLPRCTSFRGLK-QIHAVTIKTHLQNDLNVLTKLI----------- 60
           P P    +   +L+L P     RGL   +HA  +K  L   L V   LI           
Sbjct: 204 PTPHTLPSLLKSLALSPAVPGARGLALAVHAHAVKLGLAGFLLVSNALIRVHAGILGRLS 263

Query: 61  ------------------NFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKT 102
                                T       +  A  LFD +P  + V ++ M  GY ++  
Sbjct: 264 DALVLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGD 323

Query: 103 PIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVC 162
              A+ LF  +   G+ PDD     +L ACA +G   LE+GK +H +     +   +++ 
Sbjct: 324 GREALGLFARMQADGVRPDDTVLVGVLAACAQLGV--LEQGKWVHGYLKANNIRITVFLG 381

Query: 163 TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK 222
           T L+++YA+C +++ A  +F+ + E  V+++  +I   A   R +EAL LF +++   +K
Sbjct: 382 TALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVK 441

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHE-YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVS 281
           P D+  + AL +C   G +D G+ + +  ++KYG+   ++    ++D+ A+ G L++A  
Sbjct: 442 PDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEARE 501

Query: 282 VFDNMSGK-DTQAWSAMIVAYATHGQGHKSILMFEEMMK--AQVSPDE---ITFLGLLYA 335
           + + M  K D   W A++       + HK++ + E ++K   ++ PD+      LG +YA
Sbjct: 502 MVEKMPMKPDALIWGALMAGC----RFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYA 557

Query: 336 CS 337
            S
Sbjct: 558 AS 559


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  358 bits (918), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 195/514 (37%), Positives = 289/514 (56%), Gaps = 30/514 (5%)

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSK-----------TPIRAIFLFVELLN--- 115
           S +E A  +F+++P+ D+V +NTM  GY+R              PIR +F +  +++   
Sbjct: 276 SQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYA 335

Query: 116 -SGLL----------PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTT 164
            +G+L          PD  +        A V    +EE K+L           N+    T
Sbjct: 336 QNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKEL----FDAMPCRNVASWNT 391

Query: 165 LINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT 224
           ++  YA+   ++ AR IF  + +   VS+ A++ AY++     E L LF+E+        
Sbjct: 392 MLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVN 451

Query: 225 DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFD 284
                  LS+CA + +L+ G  +H  + K G      V  AL+ M+ KCG +++A S F+
Sbjct: 452 RSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFE 511

Query: 285 NMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDE 344
            M  +D  +W+ MI  YA HG G +++ +F+ M K    PD+IT +G+L ACSH+GLV++
Sbjct: 512 EMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEK 571

Query: 345 GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSC 404
           G +YFYSM   +G+    +HY CM+DLLGRAGRLDEA   + ++P +    +W  LL + 
Sbjct: 572 GISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGAS 631

Query: 405 SSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPG 464
             H N  L +   E+IFEL+  + G YV+LSN+ A +G+W DVD +R +M +RGV KVPG
Sbjct: 632 RIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPG 691

Query: 465 CSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKE 524
            S IEV N V  F  GD VH    D+   L++L   +K  GYV  T +V H D+E+EEKE
Sbjct: 692 FSWIEVQNKVHTFSVGDSVHPEREDIYAFLEDLDIRMKKAGYVSATDMVLH-DVEEEEKE 750

Query: 525 IALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             L+YHSEKLA+ +G+L  PPG  IRV+KNLRVC
Sbjct: 751 HMLKYHSEKLAVAYGILKIPPGRPIRVIKNLRVC 784



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 107/495 (21%), Positives = 207/495 (41%), Gaps = 91/495 (18%)

Query: 78  LFDRIPEPDIVLFNTM--ARGYSRSKTPIRAIF-------------LFVELLNSGLL--- 119
            F  IP PD   +NT+  A G S S   +RA+F             +     N GL+   
Sbjct: 160 FFRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLA 219

Query: 120 ---------PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA 170
                     D  S+  +L A    G   ++E ++L  F  +   ++  +    L+  Y 
Sbjct: 220 RHYFDLAPEKDAVSWNGMLAAYVRNGR--IQEAREL--FDSRTEWDAISW--NALMAGYV 273

Query: 171 ECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLS 230
           + S +E A+++F  + +  VVS+N +++ YAR     EA  LF     R++     T  +
Sbjct: 274 QRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDV----FTWTA 329

Query: 231 ALSSCALLGSLDLGKWIHE----------------YIKKYGLD-----------KYVKVN 263
            +S  A  G L+  K + +                Y+++  ++           + V   
Sbjct: 330 IVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASW 389

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
             ++  +A+ G LD+A ++F  M  KD  +W+AM+ AY+  G   +++ +F+EM +    
Sbjct: 390 NTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEW 449

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
            +   F  +L  C+    ++ G    +S   K G   G      ++ +  + G ++EA+ 
Sbjct: 450 VNRSAFACVLSTCADIAALECGMQ-LHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHS 508

Query: 384 FIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL--DDSHGGDYVILSNL---C 438
             +E+  +   + W T+++  + H   G  K+ +E +F+     S   D + L  +   C
Sbjct: 509 AFEEMEERDV-VSWNTMIAGYARH---GFGKEALE-VFDTMRKTSTKPDDITLVGVLAAC 563

Query: 439 ARAGRWED-VDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDEL 497
           + +G  E  + Y   + +D GV   P   +  ++ + R                  LDE 
Sbjct: 564 SHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGR---------------AGRLDEA 608

Query: 498 VKELKMVGYVPDTSL 512
           V  +K + + PD+++
Sbjct: 609 VNLMKDMPFEPDSTM 623



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 156/355 (43%), Gaps = 43/355 (12%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  LF  +P      +NTM  GY+ +    +A+  F  +      PD +S+ +LL A   
Sbjct: 126 AERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPR----PDSFSYNTLLHALGV 181

Query: 135 VGAEALEEGKQLHC-FAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
             + +L + + L     +K  ++ N+     +I+ +A    V  AR  F+   E   VS+
Sbjct: 182 --SSSLADVRALFDEMPVKDSVSYNV-----MISSHANHGLVSLARHYFDLAPEKDAVSW 234

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK- 252
           N ++ AY R+ R  EA  LF    E            A+S  AL+        I E  K 
Sbjct: 235 NGMLAAYVRNGRIQEARELFDSRTE----------WDAISWNALMAGYVQRSQIEEAQKM 284

Query: 253 --KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310
             K      V  NT ++  +A+ G + +A  +FD    +D   W+A++  YA +G   ++
Sbjct: 285 FNKMPQRDVVSWNT-MVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEA 343

Query: 311 ILMFEEMMKAQVSPDE--ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
             +F+ M      PD+  +++  ++ A     +++E    F +M  +      +  +  M
Sbjct: 344 KRVFDAM------PDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCR-----NVASWNTM 392

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
           +    +AG LDEA      +P K   + W  +L   ++++ +G +++ ++   E+
Sbjct: 393 LTGYAQAGMLDEARAIFGMMPQKDA-VSWAAML---AAYSQIGFSEETLQLFKEM 443



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 102/253 (40%), Gaps = 18/253 (7%)

Query: 166 INLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTD 225
           I  +     V  A R+F  +      +YN ++  YA + R  +ALS FR +   +    +
Sbjct: 114 ITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYN 173

Query: 226 VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285
            T+L AL   + L        +     +  +   V  N  +I  HA  G +  A   FD 
Sbjct: 174 -TLLHALGVSSSLAD------VRALFDEMPVKDSVSYNV-MISSHANHGLVSLARHYFDL 225

Query: 286 MSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
              KD  +W+ M+ AY  +G+    I    E+  ++   D I++  L+        ++E 
Sbjct: 226 APEKDAVSWNGMLAAYVRNGR----IQEARELFDSRTEWDAISWNALMAGYVQRSQIEEA 281

Query: 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS 405
              F  M  +      +  +  MV    R G + EA R  D  PI+     W  ++S  +
Sbjct: 282 QKMFNKMPQR-----DVVSWNTMVSGYARRGDMAEARRLFDVAPIRDV-FTWTAIVSGYA 335

Query: 406 SHNNLGLAKQVIE 418
            +  L  AK+V +
Sbjct: 336 QNGMLEEAKRVFD 348



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 79/191 (41%), Gaps = 32/191 (16%)

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           ++ N A I  H + GR+ DA  +F  M  + T  ++ M+  YA +G+  +++  F  + +
Sbjct: 108 IRRNRA-ITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPR 166

Query: 320 AQVSPDEITFLGLLYACSHT-------GLVDE-------GWNYFYSMRDKYGIVPGIKHY 365
               PD  ++  LL+A   +        L DE        +N   S    +G+V   +HY
Sbjct: 167 ----PDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHY 222

Query: 366 ------------GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413
                         M+    R GR+ EA    D    +   I W  L++     + +  A
Sbjct: 223 FDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSR-TEWDAISWNALMAGYVQRSQIEEA 281

Query: 414 KQVIERIFELD 424
           +++  ++ + D
Sbjct: 282 QKMFNKMPQRD 292


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  358 bits (918), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 199/523 (38%), Positives = 309/523 (59%), Gaps = 8/523 (1%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           +H   + +    D  + TKLIN   +     S++ A  +FD   E  I ++N + R  + 
Sbjct: 100 VHRCLVDSGFDQDPFLATKLINMYYE---LGSIDRALKVFDETRERTIYVWNALFRALAM 156

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC--VGAEALEEGKQLHCFAIKLGLNS 157
                  + L++++   G   D +++  +LKAC    +    L +GK++H   ++ G  +
Sbjct: 157 VGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEA 216

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL- 216
           N++V TTL+++YA+   V  A  +F  +     VS++A+I  +A++  P +AL LF+ + 
Sbjct: 217 NIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMM 276

Query: 217 -QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
            +  N  P  VTM++ L +CA L +L+ GK IH YI +  LD  + V  ALI M+ +CG 
Sbjct: 277 FEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDSILPVLNALITMYGRCGE 336

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           +     VFDNM  +D  +W+++I  Y  HG G K+I +FE M+   VSP  I+F+ +L A
Sbjct: 337 VLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGA 396

Query: 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
           CSH GLV+EG   F SM  KY I PG++HY CMVDLLGRA RL EA + I+++  +  P 
Sbjct: 397 CSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPT 456

Query: 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455
           +W +LL SC  H N+ LA++    +FEL+  + G+YV+L+++ A A  W +   + KL++
Sbjct: 457 VWGSLLGSCRIHCNVELAERASTVLFELEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLE 516

Query: 456 DRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHH 515
            RG+ K+PGCS IEV   V  F S D  +    ++   L +L  E+K  GYVP T++V +
Sbjct: 517 ARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLY 576

Query: 516 GDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            D+++EEKE  +  HSEKLA+ FGL+NT  G TIR+ KNLR+C
Sbjct: 577 -DLDEEEKERIVLGHSEKLAVAFGLINTAKGETIRIRKNLRLC 618



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 161/341 (47%), Gaps = 25/341 (7%)

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179
           P   +F  L+ +CA     +L  G  +H   +  G + + ++ T LIN+Y E   ++ A 
Sbjct: 76  PTQQTFEHLIYSCA--QKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRAL 133

Query: 180 RIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL-- 237
           ++F+   E  +  +NA+  A A      E L L+ ++          T    L +C +  
Sbjct: 134 KVFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSE 193

Query: 238 --LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWS 295
             +  L  GK IH +I ++G +  + V T L+D++AK G +  A SVF  M  K+  +WS
Sbjct: 194 LSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWS 253

Query: 296 AMIVAYATHGQGHKSILMFEEMM--KAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSM 352
           AMI  +A +    K++ +F+ MM       P+ +T + +L AC+    +++G   + Y +
Sbjct: 254 AMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYIL 313

Query: 353 RDKY-GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
           R +   I+P +     ++ + GR G +    R  D +  K   + W +L+S    H   G
Sbjct: 314 RRQLDSILPVLN---ALITMYGRCGEVLMGQRVFDNMK-KRDVVSWNSLISIYGMH---G 366

Query: 412 LAKQVIERIFELDDSHGG------DYVILSNLCARAGRWED 446
             K+ I+ IFE +  H G       ++ +   C+ AG  E+
Sbjct: 367 FGKKAIQ-IFE-NMIHQGVSPSYISFITVLGACSHAGLVEE 405



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 4/143 (2%)

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           N +I +  +     +AL L     E N  PT  T    + SCA   SL  G  +H  +  
Sbjct: 51  NQLIQSLCKGGNLKQALHLL--CCEPN--PTQQTFEHLIYSCAQKNSLSYGLDVHRCLVD 106

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
            G D+   + T LI+M+ + G +D A+ VFD    +    W+A+  A A  G G + + +
Sbjct: 107 SGFDQDPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLDL 166

Query: 314 FEEMMKAQVSPDEITFLGLLYAC 336
           + +M       D  T+  +L AC
Sbjct: 167 YIQMNWIGTPSDRFTYTYVLKAC 189


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 197/516 (38%), Positives = 301/516 (58%), Gaps = 38/516 (7%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL-NSGLLPDDYSFPSLLKACACVG 136
           LFD++ +PDIV +N++  GY      IRA+  F  +L +S L PD ++  S+L ACA   
Sbjct: 233 LFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACA--N 290

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC------- 189
            E+L+ GKQ+H   ++  ++    V   LI++YA+   VE A RI E    P        
Sbjct: 291 RESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFT 350

Query: 190 --------------------------VVSYNAIITAYARSSRPNEALSLFRELQERNLKP 223
                                     VV++ A+I  YA++   ++AL LFR +     KP
Sbjct: 351 SLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKP 410

Query: 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVF 283
            + T+ + LS  + L SLD GK +H    +      V V  ALI M+++ G + DA  +F
Sbjct: 411 NNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIF 470

Query: 284 DNM-SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342
           +++ S +DT  W++MI++ A HG G+++I +FE+M++  + PD IT++G+L AC+H GLV
Sbjct: 471 NHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLV 530

Query: 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
           ++G +YF  M++ + I P   HY CM+DLLGRAG L+EAY FI  +PI+   + W +LLS
Sbjct: 531 EQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLS 590

Query: 403 SCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKV 462
           SC  H  + LAK   E++  +D ++ G Y+ L+N  +  G+WED   +RK MKD+ V K 
Sbjct: 591 SCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKE 650

Query: 463 PGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEE 522
            G S +++ N V  F   D +H     +   + ++ KE+K +G++PDT+ V H D+E E 
Sbjct: 651 QGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIKKMGFIPDTNSVLH-DLEQEV 709

Query: 523 KEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           KE  LR+HSEKLAI F L+NTP  TT+R++KNLRVC
Sbjct: 710 KEQILRHHSEKLAIAFALINTPKHTTVRIMKNLRVC 745



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/417 (27%), Positives = 197/417 (47%), Gaps = 72/417 (17%)

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130
           +++ A  +FD IP+PD V + TM  GY+       A+  F+ +++SG+ P  ++F ++L 
Sbjct: 94  NLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLA 153

Query: 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRI--------- 181
           +CA   A+AL+ GK++H F +KLG +  + V  +L+N+YA+C D   A+ +         
Sbjct: 154 SCA--AAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDT 211

Query: 182 ----------------------FENISEPCVVSYNAIITAYARSSRPNEALSLFR-ELQE 218
                                 F+ +++P +VS+N+IIT Y        AL  F   L+ 
Sbjct: 212 STWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKS 271

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR--- 275
            +LKP   T+ S LS+CA   SL LGK IH +I +  +D    V  ALI M+AK G    
Sbjct: 272 SSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEV 331

Query: 276 ------------------------------LDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
                                         +D A ++FD++  +D  AW+AMIV YA +G
Sbjct: 332 AHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNG 391

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY 365
               ++++F  M++    P+  T   +L   S    +D G    +++  +   V  +   
Sbjct: 392 LISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHG-KQLHAVAIRLEEVSSVSVG 450

Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
             ++ +  R+G + +A +  + +      + W +++ S + H   GL  + IE +FE
Sbjct: 451 NALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQH---GLGNEAIE-LFE 503



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 145/285 (50%), Gaps = 8/285 (2%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +FD +   D+V +  M  GY+++     A+ LF  ++  G  P++Y+  ++L   + 
Sbjct: 365 ARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISS 424

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI-SEPCVVSY 193
           + +  L+ GKQLH  AI+L   S++ V   LI +Y+    ++ AR+IF +I S    +++
Sbjct: 425 LAS--LDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTW 482

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
            ++I + A+    NEA+ LF ++   NLKP  +T +  LS+C  +G ++ GK     +K 
Sbjct: 483 TSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKN 542

Query: 254 -YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHGQGHKSI 311
            + ++        +ID+  + G L++A +   NM  + D  AW +++ +   H     + 
Sbjct: 543 VHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAK 602

Query: 312 LMFEEMMKAQVSPDEI-TFLGLLYACSHTGLVDEGWNYFYSMRDK 355
           +  E+++   + P+    +L L    S  G  ++      SM+DK
Sbjct: 603 VAAEKLL--LIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDK 645



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 130/284 (45%), Gaps = 39/284 (13%)

Query: 164 TLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKP 223
           T+++ +A+  ++++ARR+F+ I +P  VS+  +I  Y        A+  F  +    + P
Sbjct: 84  TILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISP 143

Query: 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVF 283
           T  T  + L+SCA   +LD+GK +H ++ K G    V V  +L++M+AKCG    A  VF
Sbjct: 144 TQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVF 203

Query: 284 DNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVD 343
           D M  KDT  W+ MI  +    Q   ++ +F++M      PD ++               
Sbjct: 204 DRMRLKDTSTWNTMISMHMQFCQFDLALALFDQM----TDPDIVS--------------- 244

Query: 344 EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF-IDELPIKSTPILWRTLLS 402
             WN          I+ G  H G  +  L       E + F +    +K       ++LS
Sbjct: 245 --WN---------SIITGYCHQGYDIRAL-------ETFSFMLKSSSLKPDKFTLGSVLS 286

Query: 403 SCSSHNNLGLAKQVIERIFELD-DSHGGDYVILSNLCARAGRWE 445
           +C++  +L L KQ+   I   D D  G     L ++ A++G  E
Sbjct: 287 ACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVE 330



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 113/285 (39%), Gaps = 47/285 (16%)

Query: 9   ITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPT 68
           I + P P   T     LS++    S    KQ+HAV I+    + ++V   LI   T    
Sbjct: 404 IREGPKPNNYT-LAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALI---TMYSR 459

Query: 69  TSSMEHAHLLFDRI-PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPS 127
           + S++ A  +F+ I    D + + +M    ++      AI LF ++L   L PD  ++  
Sbjct: 460 SGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVG 519

Query: 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE 187
           +L AC  VG   +E+GK                   +  NL     ++           E
Sbjct: 520 VLSACTHVG--LVEQGK-------------------SYFNLMKNVHNI-----------E 547

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
           P    Y  +I    R+    EA +  R +    ++P  V   S LSSC +   +DL K  
Sbjct: 548 PTSSHYACMIDLLGRAGLLEEAYNFIRNMP---IEPDVVAWGSLLSSCRVHKYVDLAKVA 604

Query: 248 HE---YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK 289
            E    I       Y+    AL +  + CG+ +DA  V  +M  K
Sbjct: 605 AEKLLLIDPNNSGAYL----ALANTLSACGKWEDAAKVRKSMKDK 645



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 90/189 (47%), Gaps = 11/189 (5%)

Query: 243 LGKWIHEYIKKYGLDKYVKV--NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVA 300
           +G+ IH  I K+GL +Y+ V     L++++ K G   DA  +FD M  K T +W+ ++ A
Sbjct: 30  IGRCIHARIIKHGL-RYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSA 88

Query: 301 YATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP 360
           +A  G    +  +F+E+ +    PD +++  ++   +H GL     + F  M    GI P
Sbjct: 89  HAKAGNLDSARRVFDEIPQ----PDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSS-GISP 143

Query: 361 GIKHYGCMVDLLGRAGRLD---EAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
               +  ++     A  LD   + + F+ +L       +  +LL+  +   +  +AK V 
Sbjct: 144 TQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVF 203

Query: 418 ERIFELDDS 426
           +R+   D S
Sbjct: 204 DRMRLKDTS 212


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 192/544 (35%), Positives = 301/544 (55%), Gaps = 42/544 (7%)

Query: 50  QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFL 109
           ++DL   T ++ +  +    +    A  +F+ +     V++N M  GY +S     A  L
Sbjct: 230 KDDLTWTTMVVGYVRRGDVNA----ARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFEL 285

Query: 110 FVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN----SNLYVCTTL 165
           F  +++  +  D+++F S+L ACA  G      GK +H   I+L  N    + L V   L
Sbjct: 286 FRRMVSEKVPLDEFTFTSVLSACANAGF--FVHGKSVHGQIIRLQPNFVPEAALPVNNAL 343

Query: 166 INLYAECSDVEAARRIFENISEPCVVSYNAI----------------------------- 196
           + LY++   +  A+RIF+ ++   VVS+N I                             
Sbjct: 344 VTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWM 403

Query: 197 --ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
             ++ Y       +AL LF +++  ++KP D T   A+++C  LG+L  G+ +H ++ + 
Sbjct: 404 VMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQC 463

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
           G +       AL+ M+AKCG ++DA  VF  M   D+ +W+AMI A   HG G +++ +F
Sbjct: 464 GFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELF 523

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
           ++M+   + PD I+FL +L AC+H GLVDEG++YF SM+  +GI PG  HY  ++DLLGR
Sbjct: 524 DQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGR 583

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
           +GR+ EA   I  +P + TP +W  +LS C ++ ++       +++F +   H G Y++L
Sbjct: 584 SGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILL 643

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
           SN  + AGRW D   +RKLM+DRGV K PGCS IEV + +  F  GD  H  + ++ + L
Sbjct: 644 SNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFL 703

Query: 495 DELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
           + +   ++ +GYVPDT  V H DME  EKE  L  HSEKLA+ FGLL  PPG T+ V+KN
Sbjct: 704 EVIGARMRKLGYVPDTKFVLH-DMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKN 762

Query: 555 LRVC 558
           LR+C
Sbjct: 763 LRIC 766



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 129/495 (26%), Positives = 193/495 (38%), Gaps = 117/495 (23%)

Query: 72  MEHAHLLFDRIPEP--DIVLFNTMARGYSRSKTPIRAIFLFVELLNSG-LLPDDYSFPSL 128
           +  A   FD +P    D VL N M   ++R+     A+ +F  LL SG L PDDYSF +L
Sbjct: 108 LRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTAL 167

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC---------------- 172
           + A   +   A     QLHC  +K G  + L V   LI LY +C                
Sbjct: 168 ISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEM 227

Query: 173 ------------------SDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
                              DV AAR +FE +     V +NA+I+ Y +S    +A  LFR
Sbjct: 228 PDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFR 287

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK----YGLDKYVKVNTALIDMH 270
            +    +   + T  S LS+CA  G    GK +H  I +    +  +  + VN AL+ ++
Sbjct: 288 RMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLY 347

Query: 271 AKCGR-------------------------------LDDAVSVFDNMSGKDTQAWSAMIV 299
           +K G+                               LD AV VF  M  K+  +W  M+ 
Sbjct: 348 SKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVS 407

Query: 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-------------- 345
            Y   G    ++ +F +M    V P + T+ G + AC   G +  G              
Sbjct: 408 GYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEA 467

Query: 346 ----WNYFYSMRDKYGIVPGIK------------HYGCMVDLLGRAGRLDEAYRFIDEL- 388
                N   +M  K G V   +             +  M+  LG+ G   EA    D++ 
Sbjct: 468 SNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMV 527

Query: 389 --PIKSTPILWRTLLSSCSSHNNLGLAK------QVIERIFELDDSHGGD-YVILSNLCA 439
              I    I + T+L++C   N+ GL        + ++R F +  S G D Y  L +L  
Sbjct: 528 AEGIDPDRISFLTILTAC---NHAGLVDEGFHYFESMKRDFGI--SPGEDHYARLIDLLG 582

Query: 440 RAGRWEDVDYLRKLM 454
           R+GR  +   L K M
Sbjct: 583 RSGRIGEARDLIKTM 597



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 122/283 (43%), Gaps = 43/283 (15%)

Query: 163 TTLINLYAECSDVEAARRIFENI--SEPCVVSYNAIITAYARSSRPNEALSLFREL-QER 219
           T+L+   A    +  A   F+ +  +    V +NA+++A+AR+S    A+S+F  L    
Sbjct: 96  TSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSG 155

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGK--WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           +L+P D +  + +S+   + +L       +H  + K G    + V+ ALI ++ KC   +
Sbjct: 156 SLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPE 215

Query: 278 ---DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE------------------ 316
              DA  V D M  KD   W+ M+V Y   G  + +  +FEE                  
Sbjct: 216 ASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQ 275

Query: 317 -------------MMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVP-- 360
                        M+  +V  DE TF  +L AC++ G    G + +   +R +   VP  
Sbjct: 276 SGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEA 335

Query: 361 GIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
            +     +V L  + G++  A R  D + +K   + W T+LS 
Sbjct: 336 ALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDV-VSWNTILSG 377


>gi|357509743|ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360204|gb|ABN08217.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355500175|gb|AES81378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 200/528 (37%), Positives = 313/528 (59%), Gaps = 13/528 (2%)

Query: 35  RGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTT-SSMEHAHLLFDRIPEPDIVLFNTM 93
           +GL Q+HA  IK  LQ    +   LINF ++     SS++    +F   P      ++++
Sbjct: 38  KGL-QLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQ----IFHDSPHKSATTWSSV 92

Query: 94  ARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL 153
              ++++  P+ ++  F  +L  G+ PDD+ FPS  K+C  +   +L   K LHCFA+K 
Sbjct: 93  ISSFAQNDLPLLSLNYFRLMLRQGVPPDDHIFPSATKSCGIL--SSLPVAKMLHCFALKT 150

Query: 154 GLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLF 213
             + +++V +++I++YA+C D+  A  +F+ +    VVS++ +I  Y +    +E+L LF
Sbjct: 151 AYHLDIFVGSSVIDMYAKCGDICYAHNVFDEMPYRNVVSWSGLIYGYVQLGEDDESLRLF 210

Query: 214 RE--LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271
           +   ++E N    D T+ S L  C     L +G+ IH    K   D    V ++LI +++
Sbjct: 211 KRFLVEEENEGVNDFTLSSVLRVCGGSTLLQMGRLIHGLSFKTSFDSSCFVASSLISLYS 270

Query: 272 KCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK-AQVSPDEITFL 330
           KCG +++A  VF+ ++ ++   W+AM++A A H    K+  +F++M     +  + ITFL
Sbjct: 271 KCGVVEEAYDVFEEVTVRNLGMWNAMLIACAQHAHTDKTFELFDKMKSVGGMKANFITFL 330

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
            +LYACSH GLV++G  YF  M+D YGI PG +HY  MVDLLGRAG+L++A + I+E+P+
Sbjct: 331 CVLYACSHAGLVEKGKYYFELMKD-YGIEPGTQHYSTMVDLLGRAGKLNDAVKLIEEMPM 389

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL 450
           + T  +W  LL+ C  H N  LA  V +R+ EL     G +V+LSN  A AGRWE+    
Sbjct: 390 EPTESVWGALLTGCRLHGNTKLASYVADRVSELGSVSSGLHVMLSNAYAAAGRWEEAAKA 449

Query: 451 RKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT 510
           RK+M+DRG+ K  G S +E  N +  F +GD  H+ S ++   LDEL +E+   GYV DT
Sbjct: 450 RKMMRDRGIKKETGLSWVEEGNRIHTFAAGDRSHAKSVEIYDKLDELGEEMDKAGYVADT 509

Query: 511 SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           S V   +++ EEK  ++RYHSE+LAI FG +  P G  IRV+KNLRVC
Sbjct: 510 SFVLK-EVDGEEKSRSIRYHSERLAIAFGFITFPHGQPIRVMKNLRVC 556



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 82/183 (44%), Gaps = 4/183 (2%)

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
           N +P    + + L S     SL  G  +H +I K GL     ++  LI+ ++K      +
Sbjct: 15  NQQPLYRNLCNTLLSLTFSRSLPKGLQLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSS 74

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS-H 338
           + +F +   K    WS++I ++A +     S+  F  M++  V PD+  F     +C   
Sbjct: 75  LQIFHDSPHKSATTWSSVISSFAQNDLPLLSLNYFRLMLRQGVPPDDHIFPSATKSCGIL 134

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
           + L      + ++++  Y +   +     ++D+  + G +  A+   DE+P ++  + W 
Sbjct: 135 SSLPVAKMLHCFALKTAYHLDIFVG--SSVIDMYAKCGDICYAHNVFDEMPYRNV-VSWS 191

Query: 399 TLL 401
            L+
Sbjct: 192 GLI 194


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  357 bits (917), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 175/457 (38%), Positives = 276/457 (60%), Gaps = 18/457 (3%)

Query: 68  TTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPS 127
           +   ++ A  +FD+    D+V +N+M  GY R      A+  + E+   G+ PD+ +   
Sbjct: 126 SCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIG 185

Query: 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE 187
           ++ +CA +  E L+ G++ HC+  + GL   + +   L+++Y +C ++E+AR++F++++ 
Sbjct: 186 VVSSCAQL--EDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTN 243

Query: 188 PCVVSY----------------NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSA 231
             +VS+                NA+I  Y  ++R  EAL+LF E+Q  N+ P +VTM+S 
Sbjct: 244 KTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSC 303

Query: 232 LSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDT 291
           LS+C+ LG+LD+G WIH YI+K+ L   V + TALIDM+AKCG++  A+ VF  + G+++
Sbjct: 304 LSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNS 363

Query: 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYS 351
             W+A+I   A HG  H +I  F EM+   V PDE+TFLGLL AC H GLV+EG  YF  
Sbjct: 364 LTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQ 423

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
           M  K+ + P +KHY CMVDLLGRAG L+EA   I  +PI++  ++W  L  +C  H N+ 
Sbjct: 424 MSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVL 483

Query: 412 LAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVN 471
           + ++   ++ ++D    G YV+L+N+   A  W++    RKLM+ RGV K PGCSSIEVN
Sbjct: 484 MGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKXRKLMRQRGVEKTPGCSSIEVN 543

Query: 472 NVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVP 508
            +V EF   D  H  S  + + L +L ++L++V   P
Sbjct: 544 GIVYEFIVRDKSHPQSEQIYECLIQLTRQLELVECTP 580



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 118/383 (30%), Positives = 204/383 (53%), Gaps = 24/383 (6%)

Query: 45  IKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPI 104
           + T L  D    ++LI FC  +         ++LF+    P+   +N   RG+  S+ P 
Sbjct: 2   VLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFN-TRNPNTFSWNVAIRGFLDSENPR 60

Query: 105 RAIFLFVELLN-SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCT 163
            A+ L+  +L   G  PD+Y++P L KACA +    +  G ++    + LG +S+++V  
Sbjct: 61  EAVVLYKRVLQCDGTKPDNYTYPLLFKACARL--SLIRMGSEILGHVLHLGFDSDIFVSN 118

Query: 164 TLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKP 223
            +I+L   C D++ AR++F+      +VS+N++I  Y R     EAL+ +RE++   +KP
Sbjct: 119 AVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKP 178

Query: 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVF 283
            +VTM+  +SSCA L  LDLG+  H YI++ GL   V +  AL+DM+ KCG L+ A  +F
Sbjct: 179 DEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLF 238

Query: 284 DNMSG----------------KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
           D+M+                 KD   W+AMI  Y    +G +++ +F EM    ++PDE+
Sbjct: 239 DSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEV 298

Query: 328 TFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
           T +  L ACS  G +D G W + Y   +K+ +   +     ++D+  + G++ +A +   
Sbjct: 299 TMVSCLSACSQLGALDVGIWIHHYI--EKHELSLNVALGTALIDMYAKCGKITKAIQVFQ 356

Query: 387 ELPIKSTPILWRTLLSSCSSHNN 409
           ELP +++ + W  ++S  + H N
Sbjct: 357 ELPGRNS-LTWTAIISGLALHGN 378


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  357 bits (917), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 196/505 (38%), Positives = 283/505 (56%), Gaps = 36/505 (7%)

Query: 89  LFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQL-- 146
           L N + R  + S  P  A+ L+  LL +G  P  ++ PSLLK+ A   A     G  L  
Sbjct: 173 LHNALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARGLALAV 232

Query: 147 HCFAIKLGLNSNLYVCT--------------------------------TLINLYAECSD 174
           H  A+KLGL   L V                                  TLI  YA    
Sbjct: 233 HAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGR 292

Query: 175 VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSS 234
           V  AR +F+ +     VS++A++  Y ++    EAL LF  +Q   ++P D  ++  L++
Sbjct: 293 VTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAA 352

Query: 235 CALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAW 294
           CA LG L+ GKW+H Y+K   +   V + TAL+DM+AKCG +  A+ VF  M  K+  AW
Sbjct: 353 CAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAW 412

Query: 295 SAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD 354
           + MI   A HG+G +++ +F +M +  V PD+I F+G L AC+HTGLVD+G   F SM  
Sbjct: 413 TTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVR 472

Query: 355 KYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAK 414
           KYGI P I+HYGCMVDLL R G L+EA   ++++P+K   ++W  L++ C  H N+ LA+
Sbjct: 473 KYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAE 532

Query: 415 QVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVV 474
            V++   EL+    G YV+L N+ A +GR      +R LM+++GV K PGCS++E+  V+
Sbjct: 533 YVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVI 592

Query: 475 REFFSGDGVHSYSTDLQKALDELVKELKM-VGYVPDTSLVHHGDMEDEEKEIALRYHSEK 533
            +F  GD  H +  ++    DE+   +++  GYVPD   V   D+E+EEKE AL  HSEK
Sbjct: 593 HQFIVGDLSHPFIEEILSKWDEIDSRIRLEEGYVPDKKEVLL-DIEEEEKENALSRHSEK 651

Query: 534 LAITFGLLNTPPGTTIRVVKNLRVC 558
           +AI F L+NT     IR+VKNLRVC
Sbjct: 652 MAIAFALINTSDDMPIRIVKNLRVC 676



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 155/302 (51%), Gaps = 16/302 (5%)

Query: 43  VTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKT 102
           V ++T    D +    LI   T       +  A  LFD +P  + V ++ M  GY ++  
Sbjct: 267 VLLRTAASVDASTFNTLI---TAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGD 323

Query: 103 PIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVC 162
              A+ LF  +   G+ PDD     +L ACA +G   LE+GK +H +     +   +++ 
Sbjct: 324 GREALGLFARMQADGVRPDDTVLVGVLAACAQLGV--LEQGKWVHGYLKANNIRITVFLG 381

Query: 163 TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK 222
           T L+++YA+C +++ A  +F+ + E  V+++  +I   A   R +EAL LF +++   +K
Sbjct: 382 TALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVK 441

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHE-YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVS 281
           P D+  + AL +C   G +D G+ + +  ++KYG+   ++    ++D+ A+ G L++A  
Sbjct: 442 PDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEARE 501

Query: 282 VFDNMSGK-DTQAWSAMIVAYATHGQGHKSILMFEEMMK--AQVSPDE---ITFLGLLYA 335
           + + M  K D   W A++       + HK++ + E ++K   ++ PD+      LG +YA
Sbjct: 502 MVEKMPMKPDALIWGALMAGC----RFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYA 557

Query: 336 CS 337
            S
Sbjct: 558 AS 559


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  357 bits (917), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 189/551 (34%), Positives = 320/551 (58%), Gaps = 15/551 (2%)

Query: 16  KLCTNTPNALS---LLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTT 69
           +L   +P++ +   LL  C+    L+    +HA   +     D+ V   LI    +    
Sbjct: 111 QLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRL 170

Query: 70  SSMEHAHLLFDRIPEPD--IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPS 127
            S   A  +F+ +P P+  IV +  +   Y+++  P+ A+ +F ++    + PD  +  S
Sbjct: 171 GS---ARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVS 227

Query: 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE 187
           +L A  C+  + L++G+ +H   +K+GL     +  +L  +YA+C  V  A+ +F+ +  
Sbjct: 228 VLNAFTCL--QDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKS 285

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
           P ++ +NA+I+ YA++    EA+ +F E+  ++++P  +++ SA+S+CA +GSL+  + +
Sbjct: 286 PNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSM 345

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQG 307
           +EY+ +      V +++ALIDM AKCG ++ A  VFD    +D   WSAMIV Y  HG+ 
Sbjct: 346 YEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRA 405

Query: 308 HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367
            ++I ++  M +  V P+++TFLGLL AC+H+G+V EGW +F  M D + I P  +HY C
Sbjct: 406 REAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMAD-HKINPQQQHYAC 464

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
           ++DLLGRAG LD+AY  I  +P++    +W  LLS+C  H ++ L +   +++F +D S+
Sbjct: 465 VIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSN 524

Query: 428 GGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYS 487
            G YV LSNL A A  W+ V  +R  MK++G+ K  GCS +EV   +  F  GD  H   
Sbjct: 525 TGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRY 584

Query: 488 TDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGT 547
            ++++ ++ +   LK  G+V +     H D+ DEE E  L  HSE++AI +GL++TP GT
Sbjct: 585 EEIERQVEWIESRLKEGGFVANKDASLH-DLNDEEAEETLCSHSERIAIAYGLISTPQGT 643

Query: 548 TIRVVKNLRVC 558
            +R+ KNLR C
Sbjct: 644 PLRITKNLRAC 654



 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 133/431 (30%), Positives = 223/431 (51%), Gaps = 23/431 (5%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP 85
           SL+   T    LKQIHA  +   LQ    ++TKLI+    + +   +  A  +FD +P P
Sbjct: 26  SLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIH---ASSSFGDITFARQVFDDLPRP 82

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
            I  +N + RGYSR+     A+ ++  +  + + PD ++FP LLKAC+  G   L+ G+ 
Sbjct: 83  QIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACS--GLSHLQMGRF 140

Query: 146 LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP--CVVSYNAIITAYARS 203
           +H    +LG +++++V   LI LYA+C  + +AR +FE +  P   +VS+ AI++AYA++
Sbjct: 141 VHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQN 200

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
             P EAL +F ++++ ++KP  V ++S L++   L  L  G+ IH  + K GL+    + 
Sbjct: 201 GEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLL 260

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
            +L  M+AKCG++  A  +FD M   +   W+AMI  YA +G   ++I MF EM+   V 
Sbjct: 261 ISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVR 320

Query: 324 PDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
           PD I+    + AC+  G +++  + Y Y  R  Y     I     ++D+  + G ++ A 
Sbjct: 321 PDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFIS--SALIDMFAKCGSVEGA- 377

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE--RIFELDDSHGGDYVILSNLCA- 439
           R + +  +    ++W  ++     H   G A++ I   R  E    H  D   L  L A 
Sbjct: 378 RLVFDRTLDRDVVVWSAMIVGYGLH---GRAREAISLYRAMERGGVHPNDVTFLGLLMAC 434

Query: 440 ------RAGRW 444
                 R G W
Sbjct: 435 NHSGMVREGWW 445



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 159/311 (51%), Gaps = 13/311 (4%)

Query: 115 NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174
           NSG+  D + + SL+ +     A    + KQ+H   + LGL  + ++ T LI+  +   D
Sbjct: 15  NSGIHSDSF-YASLIDS-----ATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGD 68

Query: 175 VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSS 234
           +  AR++F+++  P +  +NAII  Y+R++   +AL ++  +Q   + P   T    L +
Sbjct: 69  ITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKA 128

Query: 235 CALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN--MSGKDTQ 292
           C+ L  L +G+++H  + + G D  V V   LI ++AKC RL  A +VF+   +  +   
Sbjct: 129 CSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIV 188

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
           +W+A++ AYA +G+  +++ +F +M K  V PD +  + +L A +    + +G +   S+
Sbjct: 189 SWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASV 248

Query: 353 RDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGL 412
             K G+         +  +  + G++  A    D++      ILW  ++S  + +   G 
Sbjct: 249 V-KMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAMISGYAKN---GY 303

Query: 413 AKQVIERIFEL 423
           A++ I+   E+
Sbjct: 304 AREAIDMFHEM 314


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 192/544 (35%), Positives = 301/544 (55%), Gaps = 42/544 (7%)

Query: 50  QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFL 109
           ++DL   T ++ +  +    +    A  +F+ +     V++N M  GY +S     A  L
Sbjct: 232 KDDLTWTTMVVGYVRRGDVNA----ARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFEL 287

Query: 110 FVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN----SNLYVCTTL 165
           F  +++  +  D+++F S+L ACA  G      GK +H   I+L  N    + L V   L
Sbjct: 288 FRRMVSEKVPLDEFTFTSVLSACANAGF--FVHGKSVHGQIIRLQPNFVPEAALPVNNAL 345

Query: 166 INLYAECSDVEAARRIFENISEPCVVSYNAI----------------------------- 196
           + LY++   +  A+RIF+ ++   VVS+N I                             
Sbjct: 346 VTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWM 405

Query: 197 --ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
             ++ Y       +AL LF +++  ++KP D T   A+++C  LG+L  G+ +H ++ + 
Sbjct: 406 VMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQC 465

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
           G +       AL+ M+AKCG ++DA  VF  M   D+ +W+AMI A   HG G +++ +F
Sbjct: 466 GFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELF 525

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
           ++M+   + PD I+FL +L AC+H GLVDEG++YF SM+  +GI PG  HY  ++DLLGR
Sbjct: 526 DQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGR 585

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
           +GR+ EA   I  +P + TP +W  +LS C ++ ++       +++F +   H G Y++L
Sbjct: 586 SGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILL 645

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
           SN  + AGRW D   +RKLM+DRGV K PGCS IEV + +  F  GD  H  + ++ + L
Sbjct: 646 SNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFL 705

Query: 495 DELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
           + +   ++ +GYVPDT  V H DME  EKE  L  HSEKLA+ FGLL  PPG T+ V+KN
Sbjct: 706 EVIGARMRKLGYVPDTKFVLH-DMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKN 764

Query: 555 LRVC 558
           LR+C
Sbjct: 765 LRIC 768



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 149/599 (24%), Positives = 227/599 (37%), Gaps = 162/599 (27%)

Query: 13  PPPKLCTNTPNALSLL-----------PRCTS---FRGLKQIHAVTIKT---HLQNDLNV 55
           PPP    +  +  SLL           P C S    R L+ +HA  +     H  +  ++
Sbjct: 6   PPPTAVASLAHQCSLLLRRLAERHSPAPTCPSSSFLRALRCLHARLLTADLLHAPSHPHL 65

Query: 56  LTKLINFCTQNP------------------TTSSMEHAHL----------LFDRIPEP-- 85
             +LI+  T +P                    +S+  AH            FD +P    
Sbjct: 66  TLRLIHLYTLSPDLATPAALFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARR 125

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSG-LLPDDYSFPSLLKACACVGAEALEEGK 144
           D VL N M   ++R+     A+ +F  LL SG L PDDYSF +L+ A   +   A     
Sbjct: 126 DTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCT 185

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAEC-------------------------------- 172
           QLHC  +K G  + L V   LI LY +C                                
Sbjct: 186 QLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYV 245

Query: 173 --SDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLS 230
              DV AAR +FE +     V +NA+I+ Y +S    +A  LFR +    +   + T  S
Sbjct: 246 RRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTS 305

Query: 231 ALSSCALLGSLDLGKWIHEYIKK----YGLDKYVKVNTALIDMHAKCGR----------- 275
            LS+CA  G    GK +H  I +    +  +  + VN AL+ +++K G+           
Sbjct: 306 VLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTM 365

Query: 276 --------------------LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
                               LD AV VF  M  K+  +W  M+  Y   G    ++ +F 
Sbjct: 366 NLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFN 425

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEG------------------WNYFYSMRDKYG 357
           +M    V P + T+ G + AC   G +  G                   N   +M  K G
Sbjct: 426 QMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCG 485

Query: 358 ----------IVPGIK--HYGCMVDLLGRAGRLDEAYRFIDEL---PIKSTPILWRTLLS 402
                     ++P +    +  M+  LG+ G   EA    D++    I    I + T+L+
Sbjct: 486 AVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILT 545

Query: 403 SCSSHNNLGLAK------QVIERIFELDDSHGGD-YVILSNLCARAGRWEDVDYLRKLM 454
           +C   N+ GL        + ++R F +  S G D Y  L +L  R+GR  +   L K M
Sbjct: 546 AC---NHAGLVDEGFHYFESMKRDFGI--SPGEDHYARLIDLLGRSGRIGEARDLIKTM 599


>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 534

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 184/502 (36%), Positives = 289/502 (57%), Gaps = 37/502 (7%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           +  L R  S    K+IHA  I   L     ++TK+++ C +      M++A  LF+++  
Sbjct: 14  IPFLQRVKSRNEWKKIHACIIVHGLSQSSFMVTKMVDLCDK---LGDMDYATRLFNQVSN 70

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL-LPDDYSFPSLLKACACVGAEALEEG 143
           P++ L+N++ R Y+ +      I ++ +LL   +  PD ++FP + K+CA +G+  L  G
Sbjct: 71  PNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYL--G 128

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
           KQ+H    K G   ++     LI++Y +  D+  A ++F+ +SE  V+S+N++++ YAR 
Sbjct: 129 KQVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMSERDVISWNSLLSGYARL 188

Query: 204 SRPN-------------------------------EALSLFRELQERNLKPTDVTMLSAL 232
            +                                 EA+  FRE+Q   ++P +++++S L
Sbjct: 189 GQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVL 248

Query: 233 SSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ 292
            SCA LGSL+LGKWIH Y ++ GL K   V  ALI+M++KCG L  A+ +F+   GKD  
Sbjct: 249 PSCAHLGSLELGKWIHMYAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDVI 308

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
           +WS MI  YA HG  H++   F EM +A+V P+ ITFLGLL ACSH GL  +G  YF  M
Sbjct: 309 SWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGITFLGLLSACSHVGLWQQGLKYFDMM 368

Query: 353 RDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGL 412
           R  Y I P I+HYGC++D+L RAG+L+ A      +P+K    +W +LLSSC +  NL +
Sbjct: 369 RQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPVKPDSKIWGSLLSSCRTKGNLDV 428

Query: 413 AKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNN 472
           A   ++ + E++    G+YV+L+N+ A  G+WEDV  LRK+++   + K PGCS IEVNN
Sbjct: 429 ALVAMDHLVEVEPDDMGNYVLLANIYADLGKWEDVSRLRKIIRKENMKKTPGCSLIEVNN 488

Query: 473 VVREFFSGDGVHSYSTDLQKAL 494
           +V+EF +GD    + T++   L
Sbjct: 489 IVQEFVAGDNSKPFWTEISLVL 510


>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 536

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 191/514 (37%), Positives = 296/514 (57%), Gaps = 39/514 (7%)

Query: 30  RCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVL 89
           +C   + LK+ HA  +   L  D   L++L+ FC+ +P   S+ HA  LF +I  P I +
Sbjct: 14  KCRHMKQLKEAHAQVLTCGLGTDSFALSRLLAFCS-HPLHGSLPHAWKLFQQIQHPTICI 72

Query: 90  FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCF 149
            NTM + +      I  I ++ ++L +GL PD+Y+ P +LKACA  G ++   G+  H  
Sbjct: 73  CNTMIKAFVLKGKLINTIQIYSQMLENGLYPDNYTLPYVLKACA--GLQSCHLGESAHGQ 130

Query: 150 AIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR-----SS 204
           ++KLG   +++V  TLI +Y+   +V AAR IF+ +     VS+  +I+ YA+     ++
Sbjct: 131 SVKLGFWFDIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKVGDVETA 190

Query: 205 RP--------------------------NEALSLFRELQERNLKPTDVTMLSALSSCALL 238
           R                            E L +FR +Q   L+P +  ++S L +CA L
Sbjct: 191 RMLFDEAPMKDRGIWGSIISGYVQNNCFKEGLQMFRLMQSTGLEPDEAILVSILCACAHL 250

Query: 239 GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMI 298
           G++++G W+H Y+ + G    V+++T LIDM+AKCG LD A  +FD MS +DT  W+AMI
Sbjct: 251 GAMEIGVWVHRYLDQLGHPLSVRLSTGLIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMI 310

Query: 299 VAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGI 358
              A +G G  ++ +F EM KA V PD+ITF+ +  ACS++G+  E      SM   Y +
Sbjct: 311 SGMAMNGDGDNALRLFSEMEKAGVKPDDITFIAIFTACSYSGMAHEAIRLLNSMCTVYNM 370

Query: 359 VPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP----ILWRTLLSSCSSHNNLGLAK 414
            P  +HYGC+VDLLGRAG L EA   I ++P  S+P    I WR LLS+C SH    +A+
Sbjct: 371 EPKSEHYGCIVDLLGRAGLLKEAKELILKMPNSSSPTEQAIAWRALLSACCSHGQTEVAE 430

Query: 415 QVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVV 474
              +R+F L+  H G YV+LSNL A AG+ + V  +RK+M++RGV K PGCSS+++N VV
Sbjct: 431 DAAQRLFHLEH-HSGAYVLLSNLYAAAGKQDHVRRIRKMMENRGVDKAPGCSSVKINGVV 489

Query: 475 REFFSGDGVHSYSTDLQKALDELVKELKMVGYVP 508
            EF +G+  H    ++ + L+++ K++   G+ P
Sbjct: 490 HEFIAGEETHLQMEEVHRVLEKMNKQMGYSGFNP 523


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  357 bits (916), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 195/490 (39%), Positives = 300/490 (61%), Gaps = 10/490 (2%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL--LPDDYSFPSLLKAC 132
           A   FD IP P+ V+   MA G  R+      + +F  ++ SG   + D+ +    L A 
Sbjct: 143 ARRAFDEIPTPNPVIVTAMASGCMRNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSAS 202

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS--DVEAARRIFENISEPCV 190
           A V    +  G  +H    K+GL+    V  T+I+ YA+    D+ AAR++F+ +    V
Sbjct: 203 ARVPDRGITGG--IHALVSKIGLDGQTGVANTIIDAYAKGGGHDLGAARKLFDMMDRD-V 259

Query: 191 VSYNAIITAYARSSRPNEALSLFREL--QERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
           VS+N +I  YA++    EAL L+ ++     +++   VT+ + L +CA  G++  GK IH
Sbjct: 260 VSWNTMIALYAQNGLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIH 319

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
             + + GL+  V V T+++DM++KCG+++ A   F  + GK+  +WSAMI  Y  HG G 
Sbjct: 320 NQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQ 379

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
           +++ +F +M K+ + P+ ITF+ +L ACSH GL+ EG  ++ +M+ ++GI PG++HYGCM
Sbjct: 380 EALHVFTDMRKSGLKPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCM 439

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428
           VDLLGRAG LDEAY  I E+ +K    LW  LLS+C  + N+ LAK   ER+FELD ++ 
Sbjct: 440 VDLLGRAGCLDEAYGLIKEMKVKPDAALWGALLSACRIYKNVELAKICAERLFELDATNS 499

Query: 429 GDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYST 488
           G YV+LSN+ A AG W++V+ +R L+K RG+ K PG SS+E+      F+ GD  H    
Sbjct: 500 GYYVLLSNIYAEAGMWKEVERMRVLVKTRGIEKPPGYSSVELKGKTHLFYVGDKSHPQYK 559

Query: 489 DLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTT 548
           ++   L++L++ +   GYVP+T  V H D++ EE+E  LR HSEKLA+ F L+N+  G+ 
Sbjct: 560 EIYAYLEKLLERIHDAGYVPNTGSVLH-DLDVEERESMLRIHSEKLAVAFALMNSVQGSV 618

Query: 549 IRVVKNLRVC 558
           I V+KNLRVC
Sbjct: 619 IHVIKNLRVC 628


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  357 bits (916), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 201/537 (37%), Positives = 309/537 (57%), Gaps = 24/537 (4%)

Query: 25  LSLLPRCT---SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           +S L  C+     R   +IH   I++ L+ D+ V T LI+   +      +++A  +F+R
Sbjct: 229 ISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGK---CGKVDYAERVFNR 285

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           I   +IV +N M  G                  +  ++PD  +  +LL +C+  GA  L 
Sbjct: 286 IYSKNIVAWNAMIGGMQE---------------DDKVIPDVITMINLLPSCSQSGA--LL 328

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           EGK +H FAI+      L + T L+++Y +C +++ A  +F  ++E  +VS+N ++ AY 
Sbjct: 329 EGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYV 388

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++ +  EAL +F+ +    LKP  +T+ S L + A L S   GK IH YI K GL     
Sbjct: 389 QNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTF 448

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           ++ A++ M+AKCG L  A   FD M  KD  +W+ MI+AYA HG G  SI  F EM    
Sbjct: 449 ISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKG 508

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
             P+  TF+ LL ACS +GL+DEGW +F SM+ +YGI PGI+HYGCM+DLLGR G LDEA
Sbjct: 509 FKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEA 568

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
             FI+E+P+  T  +W +LL++  +HN++ LA+     I  L   + G YV+LSN+ A A
Sbjct: 569 KCFIEEMPLVPTARIWGSLLAASRNHNDVVLAELAARHILSLKHDNTGCYVLLSNMYAEA 628

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           GRWEDVD ++ LMK++G++K  GCS +++N     F + D  H+++  +   LD L+K++
Sbjct: 629 GRWEDVDRIKYLMKEQGLVKTVGCSMVDINGRSESFINQDRSHAHTNLIYDVLDILLKKI 688

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
               Y+   +     D+  +++  +  YHS KLAI FGL++T  G  + V KN R+C
Sbjct: 689 GEDIYLHSLTKFRPLDVA-KKRGNSPEYHSVKLAICFGLISTAIGNPVIVRKNTRIC 744



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 194/372 (52%), Gaps = 25/372 (6%)

Query: 51  NDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLF 110
           NDLN+   L  F       ++++    +F+++   D  ++N + RGY+ +     AI  +
Sbjct: 57  NDLNITRDLCGFVESGLMGNALD----MFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFY 112

Query: 111 VELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA 170
             +   G+  D+++FP ++KAC  +   AL  G+++H   IK+G + ++YVC  LI++Y 
Sbjct: 113 YRMECEGIRSDNFTFPFVIKACGEL--LALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYL 170

Query: 171 ECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLS 230
           +   +E A ++F+ +    +VS+N++++ Y        +L  F+E+     K     M+S
Sbjct: 171 KIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMIS 230

Query: 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290
           AL +C++   L  G  IH  + +  L+  + V T+LIDM+ KCG++D A  VF+ +  K+
Sbjct: 231 ALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKN 290

Query: 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YF 349
             AW+AMI              M E+    +V PD IT + LL +CS +G + EG + + 
Sbjct: 291 IVAWNAMIGG------------MQED---DKVIPDVITMINLLPSCSQSGALLEGKSIHG 335

Query: 350 YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
           +++R  +  +P +     +VD+ G+ G L  A    +++  K+  + W T++++   +  
Sbjct: 336 FAIRKMF--LPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNM-VSWNTMVAAYVQNEQ 392

Query: 410 LGLAKQVIERIF 421
              A ++ + I 
Sbjct: 393 YKEALKMFQHIL 404


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 183/487 (37%), Positives = 284/487 (58%), Gaps = 2/487 (0%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +E A  LFD +P+ D   +N    GY     P  A+ LF  ++          F      
Sbjct: 169 LEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELF-RVMQRHERSSSNKFTLSSAL 227

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
            A      L  GK++H + I+  LN +  V + L++LY +C  ++ AR IF+ + +  VV
Sbjct: 228 AASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVV 287

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+  +I       R  E   LFR+L +  ++P + T    L++CA   +  LGK +H Y+
Sbjct: 288 SWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYM 347

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
              G D      +AL+ M++KCG    A  VF+ M   D  +W+++IV YA +GQ  +++
Sbjct: 348 MHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEAL 407

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
             FE ++++   PD++T++G+L AC+H GLVD+G  YF+S+++K+G++    HY C++DL
Sbjct: 408 HFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDL 467

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
           L R+GR  EA   ID +P+K    LW +LL  C  H NL LAK+  + ++E++  +   Y
Sbjct: 468 LARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPENPATY 527

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           + L+N+ A AG W +V  +RK M + G++K PG S IE+   V  F  GD  H  ++D+ 
Sbjct: 528 ITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVGDTSHPKTSDIH 587

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
           + L EL K++K  GYVPDT+ V H D+E+E+KE  L YHSEKLA+ FG+++TPPGT I+V
Sbjct: 588 EFLGELSKKIKEEGYVPDTNFVLH-DVEEEQKEQNLVYHSEKLAVVFGIISTPPGTPIKV 646

Query: 552 VKNLRVC 558
            KNLR C
Sbjct: 647 FKNLRTC 653



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 173/331 (52%), Gaps = 17/331 (5%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K+IH   I+T L  D  V + L++   +     S++ A  +FD++ + D+V + TM    
Sbjct: 240 KEIHGYLIRTELNLDEVVWSALLDLYGK---CGSLDEARGIFDQMKDRDVVSWTTMIHRC 296

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
                      LF +L+ SG+ P++Y+F  +L ACA   AE L  GK++H + +  G + 
Sbjct: 297 FEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHL--GKEVHGYMMHAGYDP 354

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
             +  + L+++Y++C +   ARR+F  + +P +VS+ ++I  YA++ +P+EAL  F  L 
Sbjct: 355 GSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLL 414

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           +   KP  VT +  LS+C   G +D G ++ H   +K+GL         +ID+ A+ GR 
Sbjct: 415 QSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRF 474

Query: 277 DDAVSVFDNMSGK-DTQAWSAMIVAYATHGQGHKSILMFEEMMKA--QVSPDE-ITFLGL 332
            +A ++ DNM  K D   W++++     HG    ++ + +   KA  ++ P+   T++ L
Sbjct: 475 KEAENIIDNMPVKPDKFLWASLLGGCRIHG----NLELAKRAAKALYEIEPENPATYITL 530

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIV--PG 361
               ++ GL  E  N    M D  GIV  PG
Sbjct: 531 ANIYANAGLWSEVANVRKDM-DNMGIVKKPG 560



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 3/125 (2%)

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +   +    +  R  EA+ L   L   + +P+     + +++C    +L+LG+ +H + K
Sbjct: 58  FEEAVDVLCQQKRVKEAVEL---LHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTK 114

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
                  V ++  L+DM+AKCG L DA  +FD M  +D  +W+ MIV YA  G+  ++  
Sbjct: 115 ASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARK 174

Query: 313 MFEEM 317
           +F+EM
Sbjct: 175 LFDEM 179


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 204/586 (34%), Positives = 307/586 (52%), Gaps = 71/586 (12%)

Query: 39  QIHAVTIKT---HLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPD--------- 86
           Q HA  +K+   ++ +  N L  + + C  +P  S +  A  +FD I E D         
Sbjct: 170 QFHAAALKSGAGYITSVSNALVSVYSKCASSP--SLLHSARKVFDEILEKDERSWTTMMT 227

Query: 87  -----------------------IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDY 123
                                  +V +N M  GY        A+ +   +++SG+  D++
Sbjct: 228 GYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEF 287

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           ++PS+++ACA  G   L+ GKQ+H + ++   + + +   +L++LY +C   + AR IFE
Sbjct: 288 TYPSVIRACATAGL--LQLGKQVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFE 344

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNL---------------------- 221
            +    +VS+NA+++ Y  S    EA  +F+E++E+N+                      
Sbjct: 345 KMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKL 404

Query: 222 ---------KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
                    +P D     A+ SCA+LG+   G+  H  + K G D  +    ALI M+AK
Sbjct: 405 FSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAK 464

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
           CG +++A  VF  M   D+ +W+A+I A   HG G +++ ++EEM+K  + PD IT L +
Sbjct: 465 CGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTV 524

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L ACSH GLVD+G  YF SM   Y I PG  HY  ++DLL R+G+  +A   I+ LP K 
Sbjct: 525 LTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKP 584

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452
           T  +W  LLS C  H N+ L     +++F L   H G Y++LSN+ A  G+WE+V  +RK
Sbjct: 585 TAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRK 644

Query: 453 LMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSL 512
           LM+DRGV K   CS IE+   V  F   D  H  +  +   L +L KE++ +GYVPDTS 
Sbjct: 645 LMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSF 704

Query: 513 VHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           V H    D  KE  L  HSEK+A+ FGL+  PPGTTIR+ KNLR C
Sbjct: 705 VLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTC 750



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 115/519 (22%), Positives = 215/519 (41%), Gaps = 111/519 (21%)

Query: 5   PSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLIN-FC 63
           P+P + ++   +   N    L L  R TS +  + +H   I    Q   ++L +LI+ +C
Sbjct: 3   PNPDLVRAIANRYAANLRLCLPL--RRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYC 60

Query: 64  TQNPTTSSMEHAHLLFDRIPEPD---------------------------------IVLF 90
                +S + +A  LFD I EPD                                  V++
Sbjct: 61  K----SSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMY 116

Query: 91  NTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFA 150
           N M  G+S +     AI LF ++ + G  PD+++F S+L   A V A+  ++  Q H  A
Sbjct: 117 NAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALV-ADDEKQCVQFHAAA 175

Query: 151 IKLGLNSNLYVCTTLINLYAECSD----VEAARRIFENISEP------------------ 188
           +K G      V   L+++Y++C+     + +AR++F+ I E                   
Sbjct: 176 LKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYF 235

Query: 189 --------------CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSS 234
                          +V+YNA+I+ Y       EAL + R +    ++  + T  S + +
Sbjct: 236 DLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRA 295

Query: 235 CALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAW 294
           CA  G L LGK +H Y+ +   D     + +L+ ++ KCG+ D+A ++F+ M  KD  +W
Sbjct: 296 CATAGLLQLGKQVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSW 354

Query: 295 SAMIVAYATHGQGHKSILMFEEMMKAQV-------------------------------S 323
           +A++  Y + G   ++ L+F+EM +  +                                
Sbjct: 355 NALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFE 414

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
           P +  F G + +C+  G    G  Y ++   K G    +     ++ +  + G ++EA +
Sbjct: 415 PCDYAFSGAIKSCAVLGAYCNGQQY-HAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQ 473

Query: 384 FIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
               +P   + + W  L+++   H +   A  V E + +
Sbjct: 474 VFRTMPCLDS-VSWNALIAALGQHGHGAEAVDVYEEMLK 511



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/408 (22%), Positives = 170/408 (41%), Gaps = 84/408 (20%)

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
           + + L+ C  +   +L+  + +H   I  G     ++   LI++Y + S++  AR++F+ 
Sbjct: 15  YAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDE 74

Query: 185 ISEP------------------------------CV---VSYNAIITAYARSSRPNEALS 211
           ISEP                              C+   V YNA+IT ++ ++    A++
Sbjct: 75  ISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAIN 134

Query: 212 LFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI--HEYIKKYGLDKYVKVNTALIDM 269
           LF +++    KP + T  S L+  AL+   D  + +  H    K G      V+ AL+ +
Sbjct: 135 LFCKMKHEGFKPDNFTFASVLAGLALVAD-DEKQCVQFHAAALKSGAGYITSVSNALVSV 193

Query: 270 HAKCGR----LDDAVSVFDNMSGKDTQAWS------------------------------ 295
           ++KC      L  A  VFD +  KD ++W+                              
Sbjct: 194 YSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVA 253

Query: 296 --AMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNY--FYS 351
             AMI  Y   G   +++ M   M+ + +  DE T+  ++ AC+  GL+  G     +  
Sbjct: 254 YNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVL 313

Query: 352 MRDKYGIVPGIKHY-GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
            R+ +       H+   +V L  + G+ DEA    +++P K   + W  LLS   S  ++
Sbjct: 314 RREDFSF-----HFDNSLVSLYYKCGKFDEARAIFEKMPAKDL-VSWNALLSGYVSSGHI 367

Query: 411 GLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458
           G AK + +   E+ + +   ++I+ +  A  G  E+   L   MK  G
Sbjct: 368 GEAKLIFK---EMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREG 412


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 177/412 (42%), Positives = 259/412 (62%), Gaps = 8/412 (1%)

Query: 154 GLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLF 213
           GL  +  + T    +Y   + ++AA  +FE+I  PC   +N +I  +A   R   +L L+
Sbjct: 506 GLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELY 565

Query: 214 RELQERNLKPTD-------VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
            ++ E+ LKP +       V++LS L +C  LG+L  G+W H Y+ + G +  + V TA+
Sbjct: 566 SKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAI 625

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           +DM++KCG LD A  +FD  +GKD   WSAMI +Y  HG G K+I +F++M+KA V P  
Sbjct: 626 MDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSH 685

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
           +TF  +L ACSH+GL++EG  YF  M +++ I   + +Y CMVDLLGRAG+L EA   I+
Sbjct: 686 VTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIE 745

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWED 446
            +P++    +W +LL +C  HNNL LA+++ + +F LD  H G +V+LSN+ A   RW +
Sbjct: 746 NMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNE 805

Query: 447 VDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGY 506
           V+ +RK+M  RG  K+ G S +E +N V +F  GD  H     L   L+EL   +K +GY
Sbjct: 806 VEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGY 865

Query: 507 VPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           VP T  V H D+E+E KE AL YHSE+LAI FGL+NT PGTT+R+ KNLR+C
Sbjct: 866 VPLTDFVLH-DIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRIC 916



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 206/435 (47%), Gaps = 45/435 (10%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           + L   C + R + Q+H+   KT + +D    TKL +   +    +S++ A  +FD  P 
Sbjct: 8   VDLFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAK---CASLQAARKVFDETPH 64

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLF-VELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
           P++ L+N+  R Y R K     + LF + +  +G  PD+++ P  LKACA  G   LE G
Sbjct: 65  PNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACA--GLRMLELG 122

Query: 144 KQLHCFAIKLG-LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           K +H FA K   + S+++V + L+ LY++C  +  A ++FE    P  V + +++T Y +
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQ 182

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSAL------SSCALLGS--------LDLGKW-- 246
           ++ P EAL+LF ++   +    D+ ++++L      + C  + +         D+  W  
Sbjct: 183 NNDPEEALALFSQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWST 242

Query: 247 -----------------IHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK 289
                             HE I+K      V V +AL    A    L++   +      K
Sbjct: 243 MIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSAL-QACAVSRNLEEGKKIHKIAVWK 301

Query: 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-Y 348
           D  +W A++  YA +G  +KS+ +F  M+   + PD +  + +L A S  G+  +    +
Sbjct: 302 DVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLH 361

Query: 349 FYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408
            Y +R   G    +     +++L  + G L +A +    + ++   ++W +++++   H 
Sbjct: 362 GYVVRS--GFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDV-VIWSSMIAAYGIHG 418

Query: 409 NLGLAKQVIERIFEL 423
             G A ++ +++ ++
Sbjct: 419 RGGEALEIFDQMIQV 433



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 145/265 (54%), Gaps = 14/265 (5%)

Query: 49  LQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIF 108
           LQ D  +LTK   F     + + ++ A ++F+ IP P   L+N M RG++     + ++ 
Sbjct: 507 LQYDSRILTK---FAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLE 563

Query: 109 LFVELL-------NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYV 161
           L+ +++       NSG++P+  S  S+L AC  +GA  L +G+  H + I+ G   ++ V
Sbjct: 564 LYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGA--LRKGEWFHSYVIQTGFEFDILV 621

Query: 162 CTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNL 221
            T ++++Y++C  ++ AR +F+  +   +V ++A+I +Y       +A+ LF ++ +  +
Sbjct: 622 ATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGV 681

Query: 222 KPTDVTMLSALSSCALLGSLDLGKWIHEYI-KKYGLDKYVKVNTALIDMHAKCGRLDDAV 280
           +P+ VT    LS+C+  G L+ GK   + + +++ + + +     ++D+  + G+L +AV
Sbjct: 682 RPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAV 741

Query: 281 SVFDNMSGK-DTQAWSAMIVAYATH 304
            + +NM  + D   W +++ A   H
Sbjct: 742 DLIENMPVEPDASIWGSLLGACRIH 766



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 97/421 (23%), Positives = 192/421 (45%), Gaps = 51/421 (12%)

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
           D+V +  +  GY+++    +++ +F  +L+ G+ PD  +   +L A + +G    ++   
Sbjct: 302 DVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGI--FQQALC 359

Query: 146 LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSR 205
           LH + ++ G NSN++V  +LI LY++C  +  A ++F+ +    VV ++++I AY    R
Sbjct: 360 LHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGR 419

Query: 206 PNEALSLFRELQERNLKPTDVTMLS---------ALSSCALLGSLDLG----------KW 246
             EAL +F ++ +     T    +S         A++SC L   +             +W
Sbjct: 420 GGEALEIFDQMIQVMQGITSCYQISMQPQVQPPLAITSCTLATHIPWKVKAFYMRAHFRW 479

Query: 247 IHEY------------------IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG 288
           +  +                  I  YGL    ++ T    M+    R+D A  VF+++  
Sbjct: 480 LGHFWEIFPTYPFQAADMSKSNIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPN 539

Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD-------EITFLGLLYACSHTGL 341
             +  W+ MI  +AT G+   S+ ++ +MM+  + PD        ++ L +L AC + G 
Sbjct: 540 PCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGA 599

Query: 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
           + +G  +F+S   + G    I     ++D+  + G LD A    DE   K   + W  ++
Sbjct: 600 LRKG-EWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDL-VCWSAMI 657

Query: 402 SSCSSHNNLGLAKQVIERIFE--LDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459
           +S   H +   A  + +++ +  +  SH     +LS  C+ +G  E+     +LM +  V
Sbjct: 658 ASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSA-CSHSGLLEEGKMYFQLMTEEFV 716

Query: 460 L 460
           +
Sbjct: 717 I 717


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 184/483 (38%), Positives = 288/483 (59%), Gaps = 15/483 (3%)

Query: 27  LLPRCTSFRGLKQ---IHAVTIKTHLQNDL---NVLTKLINFCTQNPTTSSMEHAHLLFD 80
           +L  C   R +++   +H   IK  L +D+   N L ++   C        +  A  +FD
Sbjct: 131 VLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVC------DVIRSARKVFD 184

Query: 81  RIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEAL 140
             P+ D+V + TM +GY +       + LF E+    L  D  +   +L +CA +G   L
Sbjct: 185 TSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGD--L 242

Query: 141 EEGKQLHCFAIK-LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
             G++LH + I+   +N +++V   L+++Y +C D   AR++F+ +    VVS+N++I+ 
Sbjct: 243 RLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISG 302

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
            A+  +  E+L +FR++Q   +KP DVT+++ L+SCA LG L+LGKW+H Y+ +  +   
Sbjct: 303 LAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRAD 362

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
             +  AL+DM+AKCG +D A  VF  M+ KD  +++AMIV  A HGQG K++ +F EM K
Sbjct: 363 GFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPK 422

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
             + PDE+TF+G+L ACSH GLV+EG  YF  M   Y + P ++HYGCMVDLLGRAG ++
Sbjct: 423 MGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLIN 482

Query: 380 EAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439
           EA  FI  +PI+    +   LL +C  H  + L + V+++I +++    G YV++SN+ +
Sbjct: 483 EAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYS 542

Query: 440 RAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVK 499
            A RW D   LRK MK+R + K PGCSSIE++ V+ EF  GD  H    ++ K LDE++ 
Sbjct: 543 SANRWRDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMS 602

Query: 500 ELK 502
            LK
Sbjct: 603 HLK 605



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 126/362 (34%), Positives = 210/362 (58%), Gaps = 10/362 (2%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQND--LNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           LS L  C S +GLKQIHA  IKT    D  L + T+L   C Q+       +A  L  ++
Sbjct: 26  LSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDP-RYALSLLAQL 84

Query: 83  PEPDIVLFNTMARGYSRSKT-PIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
             P++ L+N + RG + S    I  + ++ ++L+ G++PD+Y+ P +LKACA   + A+ 
Sbjct: 85  RTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACA--ESRAVR 142

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           EG+++H  AIK+GL S++YV  TL+ +YA C  + +AR++F+   +  +VS+  +I  Y 
Sbjct: 143 EGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYV 202

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY-IKKYGLDKYV 260
           +     E + LF E+   NL+   +T++  LSSCA LG L LG+ +H Y I+   ++  V
Sbjct: 203 KMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDV 262

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            V  AL+DM+ KCG  + A  VF  M  K+  +W++MI   A  GQ  +S+ MF +M + 
Sbjct: 263 FVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRL 322

Query: 321 QVSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
            V PD++T + +L +C++ G+++ G W + Y  R++      I +   +VD+  + G +D
Sbjct: 323 GVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGN--ALVDMYAKCGSID 380

Query: 380 EA 381
           +A
Sbjct: 381 QA 382



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 188/442 (42%), Gaps = 49/442 (11%)

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL--GLNSNLYVCTTLINLYAEC--SDV 175
           P   SF S L+ C     ++++  KQ+H   IK     ++ L + T L  L A+    D 
Sbjct: 20  PHKLSFLSTLQTC-----KSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDP 74

Query: 176 EAARRIFENISEPCVVSYNAIITAYARSSRPN-EALSLFRELQERNLKPTDVTMLSALSS 234
             A  +   +  P +  YNAII   A S+  + E L +++++  + + P + T+   L +
Sbjct: 75  RYALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKA 134

Query: 235 CALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAW 294
           CA   ++  G+ +H    K GL   V V+  L+ M+A C  +  A  VFD    +D  +W
Sbjct: 135 CAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSW 194

Query: 295 SAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD 354
           + MI  Y   G   + + +F EM    +  D +T + +L +C+  G +  G      +  
Sbjct: 195 TTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIR 254

Query: 355 KYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAK 414
              +   +     +VD+  + G  + A +   E+P+K+  + W +++S  +       + 
Sbjct: 255 NSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNV-VSWNSMISGLAQKGQFKESL 313

Query: 415 QVIERIFEL----DDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPG------ 464
            +  ++  L    DD      V + N CA  G  E   ++   + DR  ++  G      
Sbjct: 314 YMFRKMQRLGVKPDDV---TLVAVLNSCANLGVLELGKWVHAYL-DRNQIRADGFIGNAL 369

Query: 465 ------CSSIEVNNVVREFFSGDGVHSYSTDL---------QKALDELVKELKMVGYVPD 509
                 C SI+    V +  +   V+SY+  +          KALD L  E+  +G  PD
Sbjct: 370 VDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALD-LFSEMPKMGIEPD 428

Query: 510 --------TSLVHHGDMEDEEK 523
                   T+  H G +E+  K
Sbjct: 429 EVTFVGVLTACSHVGLVEEGRK 450


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 193/548 (35%), Positives = 314/548 (57%), Gaps = 7/548 (1%)

Query: 12  SPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSS 71
           SPP ++ +   + +  +  CTS      IHA  IK+   +D  +  +L++   +      
Sbjct: 56  SPPFQVYSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFK---LGY 112

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVEL-LNSGLLPDDYSFPSLLK 130
            E A  LFD +P  D+V +N++  G S        +  F  +   SG  P++ +  S++ 
Sbjct: 113 DEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVS 172

Query: 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV 190
           ACA +GA  L+EGK LH   +KLG++    V  +LIN+Y +   ++AA ++FE +    +
Sbjct: 173 ACADMGA--LDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSL 230

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY 250
           VS+N+++  +  +    + + LF  ++   + P   TM++ L +C   G     + IH Y
Sbjct: 231 VSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAY 290

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310
           I + G +  + + TAL++++AK GRL+ +  +F+ +  +D  AW+AM+  YA H  G ++
Sbjct: 291 IHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREA 350

Query: 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370
           I +F+ M+K  V  D +TF  LL ACSH+GLV+EG  YF  M + Y + P + HY CMVD
Sbjct: 351 IKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVD 410

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430
           LLGR+GRL++AY  I  +P++ +  +W  LL +C  + N+ L K+V E++  LD S   +
Sbjct: 411 LLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRN 470

Query: 431 YVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDL 490
           Y++LSN+ + AG W D   +R LMK+R + + PGCS IE  N +  F  GD +H  S ++
Sbjct: 471 YIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEI 530

Query: 491 QKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIR 550
              L+EL+++++  G  P T  V H D+++E K   +  HSEKLAI FGLL T  G  + 
Sbjct: 531 HTKLEELIRKIREAGCAPKTEFVLH-DIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLI 589

Query: 551 VVKNLRVC 558
           + KNLR+C
Sbjct: 590 ITKNLRIC 597


>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 608

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 189/474 (39%), Positives = 286/474 (60%), Gaps = 8/474 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +  H++  K  L +D +    LI   T       +  A  +FD IP  D+V +N+M  GY
Sbjct: 136 RAAHSLVFKLALHSDPHTTHSLI---TMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGY 192

Query: 98  SRSKTPIRAIFLFVEL-LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           +++     A+ +F E+    G  PD+ S  S+L AC  +G   LE G+ +  F ++ G+ 
Sbjct: 193 AKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGD--LELGRWVEGFVVERGMT 250

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            N Y+ + LI++YA+C D+ +ARRIF+ ++   V+++NA+I+ YA++   +EA+SLF  +
Sbjct: 251 LNSYIGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAM 310

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           +E  +    +T+ + LS+CA +G+LDLGK I EY  + G    + V TALIDM+AKCG L
Sbjct: 311 KEDCVTENKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSL 370

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK--AQVSPDEITFLGLLY 334
             A  VF  M  K+  +W+AMI A A+HG+  +++ +F+ M        P++ITF+GLL 
Sbjct: 371 ASAQRVFKEMPQKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLS 430

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           AC H GLV+EG+  F  M   +G+VP I+HY CMVDLL RAG L EA+  I+++P K   
Sbjct: 431 ACVHAGLVNEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEKPDK 490

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454
           +    LL +C S  N+ + ++VI  I E+D S+ G+Y+I S + A    WED   +R LM
Sbjct: 491 VTLGALLGACRSKKNVDIGERVIRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLM 550

Query: 455 KDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVP 508
           + +G+ K PGCS IEV N + EF +GDG+   S DL   +D L +ELK  GYVP
Sbjct: 551 RQKGITKTPGCSWIEVENHLHEFHAGDGLCLDSIDLSNIIDLLYEELKREGYVP 604



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 129/432 (29%), Positives = 228/432 (52%), Gaps = 35/432 (8%)

Query: 27  LLPRCTSFRGLKQIHA-VTIKTHLQNDLN-VLTKLINFCTQNPTTSSMEHAHLLFDRI-P 83
           L  +C+S + L+Q+HA + +K+ + +  N +L+K I+         +  +A LLF  I P
Sbjct: 24  LAKQCSSSKTLQQVHAQMVVKSSIHSPNNHLLSKAIHL-------KNFTYASLLFSHIAP 76

Query: 84  EPDIVLFNTMARGYSRS--KTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
            P+   FN M R  + +    P+ A+ LF  +++  L P++++FP    +CA +    L 
Sbjct: 77  HPNDYAFNIMIRALTTTWHHYPL-ALTLFHRMMSLSLSPNNFTFPFFFLSCANLAV--LS 133

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
             +  H    KL L+S+ +   +LI +Y+ C  V  AR++F+ I    +VS+N++I  YA
Sbjct: 134 PARAAHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYA 193

Query: 202 RSSRPNEALSLFRELQERN-LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
           ++    EA+ +F E+  R+  +P +++++S L +C  LG L+LG+W+  ++ + G+    
Sbjct: 194 KAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNS 253

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            + +ALI M+AKCG L  A  +FD M+ +D   W+A+I  YA +G   ++I +F  M + 
Sbjct: 254 YIGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKED 313

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH----YGCMVDLLGRAG 376
            V+ ++IT   +L AC+  G +D G        D+Y    G +H       ++D+  + G
Sbjct: 314 CVTENKITLTAVLSACATIGALDLG-----KQIDEYASQRGFQHDIFVATALIDMYAKCG 368

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG------D 430
            L  A R   E+P K+    W  ++S+ +SH   G AK+ +     + D  GG       
Sbjct: 369 SLASAQRVFKEMPQKNEAS-WNAMISALASH---GKAKEALSLFQCMSDEGGGARPNDIT 424

Query: 431 YVILSNLCARAG 442
           +V L + C  AG
Sbjct: 425 FVGLLSACVHAG 436


>gi|218196348|gb|EEC78775.1| hypothetical protein OsI_19008 [Oryza sativa Indica Group]
          Length = 580

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 198/489 (40%), Positives = 305/489 (62%), Gaps = 22/489 (4%)

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP--DDYSFPSLLKACA-CVGAE 138
           +P P     N   RG + S  P R++ L    L   LLP  D  S    LKA A C  A 
Sbjct: 62  LPTPATNDLNAALRGLAASPHPARSLLLLAGRLLPALLPRPDALSLSFALKASARCSDAH 121

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
                 QLH   ++LG+ +++ + TTL++ YA+C D+ +AR++F+ ++   V ++N+++ 
Sbjct: 122 TT---VQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLA 178

Query: 199 AYARSSRPNEALSLF-------RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
             A+ + PN AL+LF       +EL  R  +P +VT+++ALS+CA +G L  G ++HE+ 
Sbjct: 179 GLAQGTEPNLALALFHRLANSFQELPSRE-EPNEVTIVAALSACAQIGLLKDGMYVHEFA 237

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ--AWSAMIVAYATHGQGHK 309
           K++GLD+ V+V  +LIDM++KCG L  A+ VF ++  +D    +++A I A++ HG G  
Sbjct: 238 KRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDRTLVSYNAAIQAHSMHGHGGD 297

Query: 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369
           ++ +F+EM   ++ PD +T+L +L  C+H+GLVD+G   F SMR    + P +KHYG +V
Sbjct: 298 ALRLFDEM-PTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMR----VAPNMKHYGTIV 352

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429
           DLLGRAGRL EAY  +  +P  +  +LW+TLL +   H  + LA+    ++ EL  +  G
Sbjct: 353 DLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDG 412

Query: 430 DYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTD 489
           DYV+LSN+ A   RW DV  +R  M+   V KVPG S  E++ V+ +F +GD  H    +
Sbjct: 413 DYVLLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQE 472

Query: 490 LQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTI 549
           + +AL+++V  +  +GY P+TS V H D+ +EEK+ AL YHSEKLAI FGL+ TPPG T+
Sbjct: 473 IYRALEDIVSRISELGYEPETSNVLH-DIGEEEKQYALCYHSEKLAIAFGLIATPPGETL 531

Query: 550 RVVKNLRVC 558
           RV+KNLR+C
Sbjct: 532 RVIKNLRIC 540



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 148/299 (49%), Gaps = 24/299 (8%)

Query: 22  PNALSLL------PRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           P+ALSL        RC+      Q+HA+ ++  +  D+ +LT L++   +      +  A
Sbjct: 102 PDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAK---CGDLASA 158

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL------LPDDYSFPSLL 129
             +FD +   D+  +N++  G ++   P  A+ LF  L NS         P++ +  + L
Sbjct: 159 RKVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAAL 218

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI--SE 187
            ACA +G   L++G  +H FA + GL+ N+ VC +LI++Y++C  +  A  +F +I   +
Sbjct: 219 SACAQIG--LLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPED 276

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
             +VSYNA I A++      +AL LF E+  R ++P  VT L+ L  C   G +D G  +
Sbjct: 277 RTLVSYNAAIQAHSMHGHGGDALRLFDEMPTR-IEPDGVTYLAVLCGCNHSGLVDDGLRV 335

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHG 305
              ++   +   +K    ++D+  + GRL +A     +M    D   W  ++ A   HG
Sbjct: 336 FNSMR---VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHG 391


>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 185/503 (36%), Positives = 289/503 (57%), Gaps = 36/503 (7%)

Query: 20  NTPNALSLLPRCTSFRGLKQIHAVTIKTH-LQNDLNVLTKLINFCTQNPTTSSMEHAHLL 78
           N    +SLL RC++   LKQIH   +K   +++ L V   L  + +     S++ +A ++
Sbjct: 10  NVEQTMSLLERCSNIGELKQIHGQLLKKGTIRHKLTVSRLLTTYASME--FSNLTYARMV 67

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
           FDRI  P+ V++NTM R YS S  P  A+ L+ ++L+  +  + Y+FP LLKAC+ +   
Sbjct: 68  FDRISSPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSAL--S 125

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA---------------------------- 170
           AL E  Q+H   IK G  S +Y   +L+ +YA                            
Sbjct: 126 ALAETHQIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMID 185

Query: 171 ---ECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT 227
              +C +VE A +IF+ + E  V+S+ ++I  + R+    EAL L +++    +KP  +T
Sbjct: 186 GYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKIT 245

Query: 228 MLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS 287
           +  +LS+CA LG+L+ GKWIH YI K  +     +  ALIDM+ KCG +  A+ VF  + 
Sbjct: 246 LSCSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLE 305

Query: 288 GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN 347
            K    W+A+I  +A HG+G +++  F +M KA + P   TF  +L ACSHTGLV+EG +
Sbjct: 306 KKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKS 365

Query: 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
            F SM   Y + P ++HYGCMVDLLGRAG L EA  F++ +PIK    +W +LL++C  H
Sbjct: 366 LFESMSTFYNMKPVMEHYGCMVDLLGRAGFLKEAKEFVESMPIKPNAAIWGSLLNACHLH 425

Query: 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSS 467
            +L L K++ + + ELD  H G Y+ L+++ A AG W++   +R  +K++G+L +PGCS+
Sbjct: 426 KHLELGKEIGKFLIELDPEHDGRYIHLASIHAAAGEWDEASQVRSHIKNKGLLNLPGCST 485

Query: 468 IEVNNVVREFFSGDGVHSYSTDL 490
           I +N V  EFF+G   H +  ++
Sbjct: 486 ITLNGVAHEFFAGAEPHPHVREM 508


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 195/539 (36%), Positives = 304/539 (56%), Gaps = 16/539 (2%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDR 81
           S +  C   + L   ++IHA    +    D  +   LI+ +C       S+  A  +FD+
Sbjct: 56  SFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCK----CRSVLDARNVFDQ 111

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +   D+V + ++  GY+++  P+ AI L   +L     P+ ++F SLLKA          
Sbjct: 112 MRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSG-- 169

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G+Q+H  A+K G + ++YV + L+++YA C  ++ A  +F+ +     VS+NA+I+ +A
Sbjct: 170 TGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFA 229

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           R      AL  F E+     + T  T  S  SS A LG+L+ GKW+H ++ K        
Sbjct: 230 RKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAF 289

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V   L+DM+AK G + DA  VFD +  KD   W++M+ A+A +G G +++  FEEM K+ 
Sbjct: 290 VGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSG 349

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           V  ++ITFL +L ACSH GLV EG  YF  M++ Y + P I HY  +V LLGRAG L+ A
Sbjct: 350 VYLNQITFLCILTACSHGGLVKEGKRYFEMMKE-YDLEPEIDHYVTVVALLGRAGLLNYA 408

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
             FI ++P++ T  +W  LL++C  H N  + +   + +FELD    G  V+L N+ A  
Sbjct: 409 LVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYAST 468

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           G+W+    +R +MK  GV K P CS +E+ N V  F + D  H  + ++ K   E+ K++
Sbjct: 469 GQWDAAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYKMWGEISKKI 528

Query: 502 KMVGYVPDTS--LVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +  GYVPD    L+H   ++D+EKE  L+YHSEKLA+ F L+  P G TIR++KN+R+C
Sbjct: 529 RKEGYVPDMDYVLLH---VDDQEKEANLQYHSEKLALAFALIEMPAGATIRIMKNIRIC 584


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 174/401 (43%), Positives = 263/401 (65%), Gaps = 1/401 (0%)

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           +L    T+I+ YA   DV  AR IF+   +    S++++I+AYA+     EAL L+RE++
Sbjct: 146 DLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMR 205

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              + P  ++M+S LS+C+ +G+L +G  +H +++   ++  +K+ TAL+DM+AKCG ++
Sbjct: 206 VAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIE 265

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           +++ VF  M  KD   WS+MI+  A HG GH ++ +F EM+   + P+EITF+G+L AC+
Sbjct: 266 NSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACT 325

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H GLV++G  YF SM D +G+VP ++HYGCMVDLLGRAG ++EA   I  +  K  PI+W
Sbjct: 326 HVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIW 385

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
           RTLL +C  H N+ +A++ + ++  LD    G YV+LSN+ A+A  WE V  +RK ++  
Sbjct: 386 RTLLGACRIHKNVEIAEEAMAKLKVLDPLADGHYVLLSNIYAQANSWEGVAEMRKTIRRE 445

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
            + +VPG SSIE  N V EF SGD  H    ++ K L+E++  L+  GY P TSLV   D
Sbjct: 446 NIQRVPGRSSIEWENTVHEFVSGDRSHPRIEEIYKMLEEMMDRLRQAGYRPMTSLVLQ-D 504

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           ++++ K+ AL  HSEKLAI FGLL TP  +T+R+ KNLR C
Sbjct: 505 IDEQSKKRALAEHSEKLAIAFGLLVTPARSTLRITKNLRAC 545



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 133/246 (54%), Gaps = 8/246 (3%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +FD   + D   +++M   Y++ +    A+ L+ E+  +G+ PD  S  S+L AC+ 
Sbjct: 166 AREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSA 225

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           +GA A+  G ++H F     +  ++ + T L+++YA+C D+E + ++F  +    V++++
Sbjct: 226 MGALAI--GAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWS 283

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEYIKK 253
           ++I   A     ++ALSLF E+  + L+P ++T +  L +C  +G ++ G K+       
Sbjct: 284 SMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDV 343

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHGQGHKSIL 312
           +G+   ++    ++D+  + G +++A+ +  +M+ K D   W  ++ A       HK++ 
Sbjct: 344 HGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRI----HKNVE 399

Query: 313 MFEEMM 318
           + EE M
Sbjct: 400 IAEEAM 405


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 200/505 (39%), Positives = 285/505 (56%), Gaps = 22/505 (4%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRS-----------KTPIRAIFLFVELLN----SGLL 119
           A  LFD++P  D + +NTM  GY++            ++P R +F +  +++    +G+L
Sbjct: 223 ARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGML 282

Query: 120 PDDYSFPSLLKACACVGAEALEEGK-QLHCFAIKLGLNS-----NLYVCTTLINLYAECS 173
            +  +F   +     V   A+  G  Q     I   L       N+    T+I  Y +  
Sbjct: 283 DEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIG 342

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
           D+  AR+ F+ + +   VS+ AII  YA+S    EAL++F E+++        T   ALS
Sbjct: 343 DIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALS 402

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
           +CA + +L+LGK IH    K G      V  AL+ M+ KCG +D+A   F+ +  KD  +
Sbjct: 403 TCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVS 462

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           W+ M+  YA HG G +++ +FE M  A V PDEIT +G+L ACSHTGL+D G  YFYSM 
Sbjct: 463 WNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMT 522

Query: 354 DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413
             YG++P  KHY CM+DLLGRAGRL+EA   I  +P +     W  LL +   H N  L 
Sbjct: 523 KDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELG 582

Query: 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNV 473
           ++  E +F+++  + G YV+LSNL A +GRW D D +R  M+D GV KVPG S +EV N 
Sbjct: 583 EKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNK 642

Query: 474 VREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEK 533
           +  F  GD  H     +   L+EL  +++  GYV  T LV H D+E+EEKE  L+YHSEK
Sbjct: 643 IHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLH-DVEEEEKEHMLKYHSEK 701

Query: 534 LAITFGLLNTPPGTTIRVVKNLRVC 558
           LA+ FG+L  P G  IRV+KNLRVC
Sbjct: 702 LAVAFGILTIPGGRPIRVMKNLRVC 726



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 92/413 (22%), Positives = 180/413 (43%), Gaps = 41/413 (9%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSK--TPIRAIFLFVELLNS----GLLPDDYSFPSL 128
           A  LFD +PE D+V +N++  GY+++      R +F  +   NS    GLL        +
Sbjct: 130 ARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRI 189

Query: 129 LKACACVGAEALEEGKQLHCF------AIKLGLNSNLY---------VCTTLINLYAECS 173
            +AC    +++  +    +C         KLG    L+            T+I+ YA+  
Sbjct: 190 EEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGG 249

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
            +  ARR+F+      V ++ A+++ Y ++   +EA + F E+ E+N    +V+  + ++
Sbjct: 250 GLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKN----EVSYNAMIA 305

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
                  +D+ + + E +    +  +      +I  + + G +  A   FD M  +D  +
Sbjct: 306 GYVQTKKMDIARELFESMPCRNISSW----NTMITGYGQIGDIAQARKFFDMMPQRDCVS 361

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           W+A+I  YA  G   +++ MF E+ +   S +  TF   L  C+    ++ G    +   
Sbjct: 362 WAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELG-KQIHGQA 420

Query: 354 DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413
            K G   G      ++ +  + G +DEA    + +  K   + W T+L+  + H   G  
Sbjct: 421 VKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDV-VSWNTMLAGYARH---GFG 476

Query: 414 KQVIERIFELDDSHG--GDYVILSNL---CARAGRWE-DVDYLRKLMKDRGVL 460
           +Q +  +FE   + G   D + +  +   C+  G  +   +Y   + KD GV+
Sbjct: 477 RQALT-VFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVI 528



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 101/228 (44%), Gaps = 55/228 (24%)

Query: 332 LLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIK 391
            L    +TGL+D G  YFY M ++Y + P  KHY CM+DLLGR  RL+E           
Sbjct: 770 FLLVVIYTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEEG---------- 819

Query: 392 STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLR 451
                   LL +   H N  L ++  +  F++   + G    +S                
Sbjct: 820 -------ALLGASRIHGNTELGEKAAQMFFKMGPQNSG----ISK--------------- 853

Query: 452 KLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTS 511
             M+D GV KVPG S  EV N          +H++S  L      L +E + +G++ +  
Sbjct: 854 --MRDVGVQKVPGYSWFEVQN---------KIHTFSVGLF-----LSRERENIGFLEELD 897

Query: 512 LVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN-LRVC 558
           L       +EEKE  L+Y SE LA   G+L  P G   RV+K  + VC
Sbjct: 898 LKMR--EREEEKERTLKYLSENLAAALGILTIPVGRPNRVMKKRVYVC 943



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 120/251 (47%), Gaps = 20/251 (7%)

Query: 176 EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSC 235
           ++A  +F  +     VSYNA+I+ Y R+S+ N A +LF ++ ER+L   +V +   + +C
Sbjct: 66  DSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNC 125

Query: 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWS 295
            L  +  L   + E        K V    +L+  +A+ G +D+A  VFDNM  K++ +W+
Sbjct: 126 RLGDARRLFDLMPE--------KDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWN 177

Query: 296 AMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA-CSHTGLVDEGWNYFYSMRD 354
            ++ AY  +G+  ++ L+FE    ++   D I++  L+        L D  W +     D
Sbjct: 178 GLLAAYVHNGRIEEACLLFE----SKSDWDLISWNCLMGGFVRKKKLGDARWLF-----D 228

Query: 355 KYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAK 414
           K  +   I  +  M+    + G L +A R  DE P +     W  ++S    +  L  AK
Sbjct: 229 KMPVRDAIS-WNTMISGYAQGGGLSQARRLFDESPTRDV-FTWTAMVSGYVQNGMLDEAK 286

Query: 415 QVIERIFELDD 425
              + + E ++
Sbjct: 287 TFFDEMPEKNE 297



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 138/326 (42%), Gaps = 28/326 (8%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           +F+ +P    V +N M  GY R+     A  LF ++    L   +      ++ C    A
Sbjct: 71  VFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDA 130

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
             L            L    ++    +L++ YA+   V+ AR +F+N+ E   +S+N ++
Sbjct: 131 RRL----------FDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLL 180

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
            AY  + R  EA  LF    + +L   +  M   +        L   +W+ +   K  + 
Sbjct: 181 AAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRK----KKLGDARWLFD---KMPVR 233

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
             +  NT +I  +A+ G L  A  +FD    +D   W+AM+  Y  +G   ++   F+EM
Sbjct: 234 DAISWNT-MISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM 292

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
            +     +E+++  ++     T  +D     F SM  +      I  +  M+   G+ G 
Sbjct: 293 PE----KNEVSYNAMIAGYVQTKKMDIARELFESMPCR-----NISSWNTMITGYGQIGD 343

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSS 403
           + +A +F D +P +   + W  +++ 
Sbjct: 344 IAQARKFFDMMPQRDC-VSWAAIIAG 368



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 11/166 (6%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           KQIH   +K        V   L+    +     S++ A+  F+ I E D+V +NTM  GY
Sbjct: 414 KQIHGQAVKMGYGTGCFVGNALLAMYFK---CGSIDEANDTFEGIEEKDVVSWNTMLAGY 470

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ-LHCFAIKLGL- 155
           +R     +A+ +F  +  +G+ PD+ +   +L AC+  G   L+ G +  +      G+ 
Sbjct: 471 ARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTG--LLDRGTEYFYSMTKDYGVI 528

Query: 156 -NSNLYVCTTLINLYAECSDVEAARRIFENIS-EPCVVSYNAIITA 199
             S  Y C  +I+L      +E A+ +  N+  +P   S+ A++ A
Sbjct: 529 PTSKHYTC--MIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGA 572



 Score = 39.7 bits (91), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 42/212 (19%), Positives = 83/212 (39%), Gaps = 55/212 (25%)

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           +K N A I  H + G  D A+ VF+ M  + + +++AMI  Y  + + + +  +F++M +
Sbjct: 50  LKWNKA-ISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPE 108

Query: 320 AQV---------------------------SPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
             +                             D +++  LL   +  G VDE    F +M
Sbjct: 109 RDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNM 168

Query: 353 RDK-----YGIVPGIKHYG---------------------CMVDLLGRAGRLDEAYRFID 386
            +K      G++    H G                     C++    R  +L +A    D
Sbjct: 169 PEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFD 228

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
           ++P++   I W T++S  +    L  A+++ +
Sbjct: 229 KMPVRDA-ISWNTMISGYAQGGGLSQARRLFD 259


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 204/563 (36%), Positives = 308/563 (54%), Gaps = 36/563 (6%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTH-LQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           S LP C+    L   +++HA  +K   L  +  V + L++    N   S   HA  +FD 
Sbjct: 265 SALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQVS---HARRVFDM 321

Query: 82  IPE--PDIVLFNTMARGYSR-SKTPIRAIFLFVEL-LNSGLLPDDYSFPSLLKACACVGA 137
           +PE    + ++N M  GY++       AI LF  +   +G  P + +   +L ACA   +
Sbjct: 322 VPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACA--RS 379

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
           E     + +H + +K  + SN +V   L+++YA    ++ A  IF  I    +VS+N +I
Sbjct: 380 EVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLI 439

Query: 198 TAYARSSRPNEALSLFRELQ--------------------ERNLKPTDVTMLSALSSCAL 237
           T        +EA  L RE+Q                     +   P ++T+++ L  CA+
Sbjct: 440 TGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAV 499

Query: 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297
           L +   GK IH Y  ++ L+  + V +AL+DM+AKCG L  A +VFD +  ++   W+ +
Sbjct: 500 LAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVITWNVL 559

Query: 298 IVAYATHGQGHKSILMFEEMM-KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKY 356
           I+AY  HG G +++ +F+ M+   + +P+E+TF+  L ACSH+GLVD G   F  M+  Y
Sbjct: 560 IMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDY 619

Query: 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLAKQ 415
           G  P    + C+VD+LGRAGRLDEAY  I  + P +     W T+L +C  H N+ L + 
Sbjct: 620 GFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGRI 679

Query: 416 VIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVR 475
             ER+FEL+      YV+L N+ + AG WE+   +R +M+ RGV K PGCS IE++  + 
Sbjct: 680 AAERLFELEPDEASHYVLLCNIYSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELDGAIH 739

Query: 476 EFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLA 535
            F +G+  H  S  +   +D L + ++  GYVPDTS V H D+++ EK   LRYHSEKLA
Sbjct: 740 RFMAGESAHPESAQVHAHMDALWERMRREGYVPDTSCVLH-DVDEAEKAAMLRYHSEKLA 798

Query: 536 ITFGLLNTPPGTTIRVVKNLRVC 558
           I FGLL  PPG TIRV KNLRVC
Sbjct: 799 IAFGLLRAPPGATIRVAKNLRVC 821



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 177/379 (46%), Gaps = 20/379 (5%)

Query: 123 YSFPSLLKACACVGAEALEEGKQLHCFAIKLGL---NSNLYVCTTLINLYAECSDVEAAR 179
           ++  S+L AC+ +  +    G++ H FA+K G        +    L+++YA    V+ A+
Sbjct: 153 FTLVSVLLACSHLADQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQ 212

Query: 180 RIFENISEPC--VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL 237
           R+F +       +V++N +I+   +  R  EA+ +  ++    ++P  VT  SAL +C+ 
Sbjct: 213 RLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSR 272

Query: 238 LGSLDLGKWIHEYI-KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM--SGKDTQAW 294
           L  L +G+ +H ++ K   L     V +AL+DM+A   ++  A  VFD +   G+    W
Sbjct: 273 LELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMW 332

Query: 295 SAMIVAYATH-GQGHKSILMFEEM-MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
           +AMI  YA H G   ++I +F  M  +A  +P E T  G+L AC+ +  V  G    +  
Sbjct: 333 NAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSE-VFTGKEAVHGY 391

Query: 353 RDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGL 412
             K  +         ++D+  R GR+DEA+     + ++   + W TL++ C     +  
Sbjct: 392 VVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDI-VSWNTLITGCIVQGLISE 450

Query: 413 AKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLK-VPGCSSIEVN 471
           A Q++ R  +L  S      +L       G    VD  R +  +  ++  +PGC+ +   
Sbjct: 451 AFQLV-REMQLPSSAASGETMLE------GDDTSVDGQRCMPNNITLMTLLPGCAVLAAP 503

Query: 472 NVVREFFSGDGVHSYSTDL 490
              +E       H+  +DL
Sbjct: 504 ARGKEIHGYAVRHALESDL 522



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 184/407 (45%), Gaps = 34/407 (8%)

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
           D+V +NTM     +      A+ +  +++  G+ PD  +F S L AC+ +  E L  G++
Sbjct: 224 DLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRL--ELLGVGRE 281

Query: 146 LHCFAIK-LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC--VVSYNAIITAYAR 202
           +H F +K   L +N +V + L+++YA    V  ARR+F+ + E    +  +NA+I  YA+
Sbjct: 282 VHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQ 341

Query: 203 -SSRPNEALSLFRELQ-ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
                 EA+ LF  ++ E    P++ TM   L +CA        + +H Y+ K  +    
Sbjct: 342 HGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNR 401

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM-- 318
            V  AL+DM+A+ GR+D+A ++F  +  +D  +W+ +I      G   ++  +  EM   
Sbjct: 402 FVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLP 461

Query: 319 ------------------KAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIV 359
                               +  P+ IT + LL  C+       G   + Y++R  + + 
Sbjct: 462 SSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVR--HALE 519

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIER 419
             +     +VD+  + G L  A    D LP ++  I W  L+ +   H     A  + +R
Sbjct: 520 SDLAVGSALVDMYAKCGCLALARAVFDRLPRRNV-ITWNVLIMAYGMHGLGDEALALFDR 578

Query: 420 IFELDDSHGGDYVILSNL--CARAGRWE-DVDYLRKLMKDRGVLKVP 463
           +    ++   +   ++ L  C+ +G  +  ++  + + +D G    P
Sbjct: 579 MVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTP 625



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 139/320 (43%), Gaps = 17/320 (5%)

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL--NSNLYVCTTLINLYAECSDVEAA 178
           D ++ P  +K+ A +        + +H  +++  L       V   L+  YA C D++AA
Sbjct: 47  DHFALPPAIKSAAAL--RDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAA 104

Query: 179 RRIFENISEPC--VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236
             +F          VSYN++I+A     R   AL   R++   + + +  T++S L +C+
Sbjct: 105 LALFAATPPDLRDAVSYNSLISALCLFRRWGHALDALRDMLADH-EVSSFTLVSVLLACS 163

Query: 237 LLGSLD--LGKWIHEYIKKYG-LDKYVKV--NTALIDMHAKCGRLDDAVSVFDNMSG--K 289
            L      LG+  H +  K+G LDK  +     AL+ M+A+ G +DDA  +F +      
Sbjct: 164 HLADQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVG 223

Query: 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYF 349
           D   W+ MI      G+  +++ +  +M+   V PD +TF   L ACS   L+  G    
Sbjct: 224 DLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVH 283

Query: 350 YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI-LWRTLLSSCSSHN 408
             +     +         +VD+     ++  A R  D +P     + +W  ++   + H 
Sbjct: 284 AFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHG 343

Query: 409 NLGLAKQVIERIFELDDSHG 428
             G+ ++ IE    ++   G
Sbjct: 344 --GMDEEAIELFSRMEAEAG 361


>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g20540-like [Vitis vinifera]
          Length = 515

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 190/498 (38%), Positives = 288/498 (57%), Gaps = 41/498 (8%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           LK+IHA  +K  L     ++TK+++ C  +  T   E+A+LLF R+ +P+  L+N M R 
Sbjct: 4   LKKIHAHVVKFSLSXSSFLVTKMVDMCNHHGET---EYANLLFKRVADPNAFLYNAMIRA 60

Query: 97  YSRSKTPIRAIFLFVELLNSG-----LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAI 151
           Y  +K  I AI +  ++L          PD ++FP ++K CA  G      GKQ+H  A 
Sbjct: 61  YKHNKVYILAITVHKQMLGHSHGENPXFPDKFTFPFVVKXCA--GLMCYNLGKQVHGHAF 118

Query: 152 KLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN----------------- 194
           K G  SN  +  +L+ +Y +C  ++ A R+FE ++E   VS+N                 
Sbjct: 119 KFGPKSNTVIENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARA 178

Query: 195 --------------AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
                         AI++ YAR      AL  FR +Q  +++  +++++S L +CA LG+
Sbjct: 179 IFEELQDKTIFSWTAIVSGYARIGCHAVALEFFRRMQMVDIELDEISLVSVLPACAQLGA 238

Query: 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVA 300
           L+LGKWIH Y  K G  + + V  ALI+++AK G +D+   +F  M+ +D  +WS MIV 
Sbjct: 239 LELGKWIHIYADKAGFLRDICVCNALIEVYAKRGSMDEGRRLFHKMNERDVISWSTMIVG 298

Query: 301 YATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP 360
            A HG+  ++I +F+EM KA+V P+ ITF+GLL AC+H GL++EG  YF SM     I P
Sbjct: 299 LANHGRAREAIELFQEMQKAKVEPNIITFVGLLSACAHAGLLNEGLGYFESMERDDNIEP 358

Query: 361 GIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
           G++HYGC+V+LLG +GRLD+A   I ++P+K    +W  L SSC SH NL +    +E +
Sbjct: 359 GVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSDIWGLLSSSCRSHGNLEIVAIAMEHL 418

Query: 421 FELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSG 480
            EL+    G+Y+ LSNL A  G+W+ V  +RKLM  + + K PGCSSIEV+N+V+E+ SG
Sbjct: 419 LELEPDDTGNYITLSNLYADLGKWDGVSRMRKLMSSKYMNKTPGCSSIEVDNMVQEYASG 478

Query: 481 DGVHSYSTDLQKALDELV 498
           D    +S  + + L  LV
Sbjct: 479 DDSKPFSKAIYRVLKLLV 496


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 198/522 (37%), Positives = 298/522 (57%), Gaps = 38/522 (7%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLL-PDDYSFPSLLK 130
           M+ A   F+++ E DIV +N+M  GY++    +RA+ +F ++L   +L PD ++  S+L 
Sbjct: 228 MDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLS 287

Query: 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR---------- 180
           ACA +  E L  G+Q+H   +  G + +  V   LI++Y+ C  VE ARR          
Sbjct: 288 ACANL--EKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDL 345

Query: 181 -----------------------IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
                                  IF+++ +  VV++ A+I  Y +     EA++LFR + 
Sbjct: 346 KIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMV 405

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
               +P   T+ + LS  + L SL  GK IH    K G    V V+ ALI M+AK G + 
Sbjct: 406 GEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSIT 465

Query: 278 DAVSVFDNMS-GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
            A   FD +   +DT +W++MI+A A HG   +++ +FE M+   + PD IT++G+  AC
Sbjct: 466 SASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSAC 525

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           +H GLV++G  YF  M+D   I+P + HY CMVDL GRAG L EA  FI+++PI+   + 
Sbjct: 526 THAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVT 585

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
           W +LLS+C  + N+ L K   ER+  L+  + G Y  L+NL +  G+WE+   +RK MKD
Sbjct: 586 WGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKD 645

Query: 457 RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHG 516
             V K  G S IEV + V  F   DG+H    ++   + ++  E+K +GYVPDT+ V H 
Sbjct: 646 GRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYITMKKIWDEIKKMGYVPDTASVLH- 704

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           D+E+E KE  LR+HSEKLAI FGL++TP  TT+R++KNLRVC
Sbjct: 705 DLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVC 746



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 198/449 (44%), Gaps = 77/449 (17%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
            FDR+P+ D V + TM  GY       +AI +  E++  G+ P  ++  ++L + A    
Sbjct: 102 FFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVA--AT 159

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRI---------------- 181
             LE GK++H F +KLGL  N+ V  +L+N+YA+C D   A+ +                
Sbjct: 160 RCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMI 219

Query: 182 ---------------FENISEPCVVSYNAIITAYARSSRPNEALSLF-RELQERNLKPTD 225
                          FE ++E  +V++N++I+ Y +      AL +F + L++  L P  
Sbjct: 220 ALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDR 279

Query: 226 VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC------------ 273
            T+ S LS+CA L  L +G+ IH +I   G D    V  ALI M+++C            
Sbjct: 280 FTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQ 339

Query: 274 ---------------------GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
                                G +++A ++FD++  +D  AW+AMIV Y  HG   ++I 
Sbjct: 340 RGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAIN 399

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           +F  M+  +  P+  T   +L   S    +  G    +    K G +  +     ++ + 
Sbjct: 400 LFRSMVGEEQRPNSYTLAAMLSVASSLASLGHG-KQIHGSAVKSGEIYSVSVSNALITMY 458

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG---- 428
            +AG +  A R  D +  +   + W +++ + + H   G A++ +E +FE     G    
Sbjct: 459 AKAGSITSASRAFDLIRCERDTVSWTSMIIALAQH---GHAEEALE-LFETMLMEGLRPD 514

Query: 429 -GDYVILSNLCARAGRWEDVDYLRKLMKD 456
              YV + + C  AG          +MKD
Sbjct: 515 HITYVGVFSACTHAGLVNQGRQYFDMMKD 543



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 153/356 (42%), Gaps = 92/356 (25%)

Query: 120 PDDYSFPSLLKACACVGAEALEE------GKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
           P   S  +LL+ C  +  +++ +       + +HC  IK GL  ++Y+   L+N+Y++  
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTG 63

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN------------- 220
               AR++F+ +      S+N +++AYA+    + +   F  L +R+             
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKN 123

Query: 221 ------------------LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
                             ++P+  T+ + L+S A    L+ GK +H +I K GL   V V
Sbjct: 124 IGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSV 183

Query: 263 NTALIDMHAKC-------------------------------GRLDDAVSVFDNMSGKDT 291
           + +L++M+AKC                               G++D A++ F+ M+ +D 
Sbjct: 184 SNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDI 243

Query: 292 QAWSAMIVAYATHGQGHKSILMFEEMMK-AQVSPDEITFLGLLYACS-----------HT 339
             W++MI  Y   G   +++ MF +M++ + +SPD  T   +L AC+           H+
Sbjct: 244 VTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHS 303

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
            +V  G+       D  GIV        ++ +  R G ++ A R I++   K   I
Sbjct: 304 HIVTTGF-------DISGIV-----LNALISMYSRCGGVETARRLIEQRGTKDLKI 347



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 3/162 (1%)

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
           NT L   +AK G +D +   FD +  +D+ +W+ MIV Y   GQ HK+I +  EMM+  +
Sbjct: 84  NTVL-SAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGI 142

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            P + T   +L + + T  ++ G    +S   K G+   +     ++++  + G    A 
Sbjct: 143 EPSQFTLTNVLASVAATRCLETG-KKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAK 201

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
              D + +K     W  +++       + LA    E++ E D
Sbjct: 202 VVFDRMVVKDISS-WNAMIALHMQVGQMDLAMAQFEQMAERD 242


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 183/485 (37%), Positives = 286/485 (58%), Gaps = 3/485 (0%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +E A  LF  + + D + + TM  G +++   + A+ +F  +   G+  D Y+F S+L A
Sbjct: 228 IEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTA 287

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C  + A  LEEGKQ+H +  +     N++V + L+++Y++C  +  A  +F  ++   ++
Sbjct: 288 CGALAA--LEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNII 345

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+ A+I  Y +++   EA+  F E+Q   +KP D T+ S +SSCA L SL+ G   H   
Sbjct: 346 SWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLA 405

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
              GL +Y+ V+ AL+ ++ KCG ++DA  +FD MS  D  +W+A++  YA  G+  ++I
Sbjct: 406 LVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETI 465

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +FE+M+   + PD +TF+G+L ACS  GLV++G +YF SM+  +GIVP   HY CM+DL
Sbjct: 466 DLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDL 525

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
             R+GR  EA  FI ++P       W TLLSSC    N+ + K   E + E D  +   Y
Sbjct: 526 YSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASY 585

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           V+L ++ A  G+W +V +LR+ M+DR V K PGCS I+  N V  F + D  H +S+ + 
Sbjct: 586 VLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIY 645

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
           + L+ L  ++   GY PD S V H D+ D +K   + +HSEKLAI FGL+  P    IR+
Sbjct: 646 EKLEWLNSKMAEEGYKPDVSSVLH-DVADADKVHMISHHSEKLAIAFGLIFVPQEMPIRI 704

Query: 552 VKNLR 556
           VKNLR
Sbjct: 705 VKNLR 709



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/446 (26%), Positives = 215/446 (48%), Gaps = 52/446 (11%)

Query: 61  NFCTQNPTTSSMEHAHL------LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL 114
           N  T+N   S++ H+ L      LF  +PE D V +N +  G+S + +P R++ L+  LL
Sbjct: 78  NLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALL 137

Query: 115 NS-GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
               + P   +  +++   + +   AL  G  +HC  ++LG  +  +V + L+++YA+  
Sbjct: 138 REESVRPTRITLSAMIMVASALSDRAL--GHSVHCQVLRLGFGAYAFVGSPLVDMYAKMG 195

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPN-------------------------- 207
            +  ARR+F+ +    VV YN +IT   R                               
Sbjct: 196 LIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQ 255

Query: 208 -----EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
                EAL +FR ++   +     T  S L++C  L +L+ GK IH YI +   +  V V
Sbjct: 256 NGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFV 315

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
            +AL+DM++KC  +  A +VF  M+ ++  +W+AMIV Y  +    +++  F EM    +
Sbjct: 316 GSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGI 375

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            PD+ T   ++ +C++   ++EG   F+ +    G++  I     +V L G+ G +++A+
Sbjct: 376 KPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAH 434

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH-----GGDYVILSNL 437
           R  DE+      + W  L+   + +   G AK+ I+ +FE   ++     G  ++ + + 
Sbjct: 435 RLFDEMSFHDQ-VSWTALV---TGYAQFGKAKETID-LFEKMLANGLKPDGVTFIGVLSA 489

Query: 438 CARAGRWED-VDYLRKLMKDRGVLKV 462
           C+RAG  E   DY   + KD G++ +
Sbjct: 490 CSRAGLVEKGCDYFDSMQKDHGIVPI 515



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 111/274 (40%), Gaps = 64/274 (23%)

Query: 136 GAEALEEGKQLHCFAIKLGLNSN-LYVCTTLINLYAECSDVEAARRIFENISEPCV---- 190
           G   +     +HC  +K  L +   ++   L+  YA+   +  ARR+F+ + +P +    
Sbjct: 24  GRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRN 83

Query: 191 ---------------------------VSYNAIITAYARSSRPNEALSLFRE-LQERNLK 222
                                      VSYNA+IT ++ +  P  ++ L+R  L+E +++
Sbjct: 84  ALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVR 143

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
           PT +T+ + +   + L    LG  +H  + + G   Y  V + L+DM+AK G + DA  V
Sbjct: 144 PTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRV 203

Query: 283 FDNMSGK-------------------------------DTQAWSAMIVAYATHGQGHKSI 311
           F  M  K                               D+  W+ M+     +G   +++
Sbjct: 204 FQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEAL 263

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
            +F  M    V  D+ TF  +L AC     ++EG
Sbjct: 264 DVFRRMRAEGVGIDQYTFGSILTACGALAALEEG 297



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 93/227 (40%), Gaps = 41/227 (18%)

Query: 26  SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S++  C +   L+   Q H + + + L   + V   L+   T      S+E AH LFD +
Sbjct: 384 SVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALV---TLYGKCGSIEDAHRLFDEM 440

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
              D V +  +  GY++       I LF ++L +GL PD  +F  +L AC+  G   +E+
Sbjct: 441 SFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAG--LVEK 498

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G                  C    ++  +   V            P    Y  +I  Y+R
Sbjct: 499 G------------------CDYFDSMQKDHGIV------------PIDDHYTCMIDLYSR 528

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           S R  EA    +++      P      + LSSC L G++++GKW  E
Sbjct: 529 SGRFKEAEEFIKQMPH---SPDAFGWATLLSSCRLRGNMEIGKWAAE 572


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 199/536 (37%), Positives = 311/536 (58%), Gaps = 12/536 (2%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           ++LP C     L   +QIHA+  K    ND  V T L++   +     SM  A  +FD +
Sbjct: 205 AILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAK---CGSMLLAENVFDEM 261

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           P  ++V +N+M  G+ ++K   RAI +F E+L+ G  PD  S  S+L ACA  G   L+ 
Sbjct: 262 PHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLG--PDQVSISSVLSACA--GLVELDF 317

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           GKQ+H   +K GL   +YV  +L+++Y +C   E A ++F    +  VV++N +I    R
Sbjct: 318 GKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFR 377

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
                +A + F+ +    ++P + +  S   + A + +L  G  IH ++ K G  K  ++
Sbjct: 378 CRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRI 437

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
           +++L+ M+ KCG + DA  VF      +   W+AMI  +  HG  +++I +FEEM+   V
Sbjct: 438 SSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGV 497

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            P+ ITF+ +L ACSHTG +D+G+ YF SM + + I PG++HY CMVDLLGR GRL+EA 
Sbjct: 498 VPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEAC 557

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
           RFI+ +P +   ++W  LL +C  H N+ + ++V ER+F+L+  + G+Y++LSN+  R G
Sbjct: 558 RFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYMLLSNIYIRHG 617

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
             E+ D +R+LM   GV K  GCS I+V N    F + D  HS + ++   L +L + +K
Sbjct: 618 MLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSRTQEIYGMLQKLKELIK 677

Query: 503 MVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             GYV +T    +     EE+  +L  HSEKLA+ FGLL  PPG+ +R+ KNLR C
Sbjct: 678 RRGYVAETQFATNSVEGSEEQ--SLWCHSEKLALAFGLLVLPPGSPVRIKKNLRTC 731



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 126/449 (28%), Positives = 224/449 (49%), Gaps = 27/449 (6%)

Query: 11  QSPPPKL--CTNTPNALSLLPRCTSFRGLK---QIHAVTIKTHLQNDL-NVLTKLINFCT 64
           QS  PK    ++ P+   LL      + LK   QIH+  + T+    L N+ T L+ +  
Sbjct: 85  QSGVPKFHQFSSVPDLKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLY-- 142

Query: 65  QNPTTSSMEHAHLLFDRIPEP--DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDD 122
                 S+ H  LLF+  P P  ++V + T+    SRS  P +A+  F  +  +G+ P+ 
Sbjct: 143 --AKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNH 200

Query: 123 YSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF 182
           ++F ++L ACA   A  L EG+Q+H    K    ++ +V T L+++YA+C  +  A  +F
Sbjct: 201 FTFSAILPACA--HAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVF 258

Query: 183 ENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242
           + +    +VS+N++I  + ++     A+ +FRE+   +L P  V++ S LS+CA L  LD
Sbjct: 259 DEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREV--LSLGPDQVSISSVLSACAGLVELD 316

Query: 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYA 302
            GK +H  I K GL   V V  +L+DM+ KCG  +DA  +F     +D   W+ MI+   
Sbjct: 317 FGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCF 376

Query: 303 THGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI 362
                 ++   F+ M++  V PDE ++  L +A +    + +G    +S   K G V   
Sbjct: 377 RCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQG-TMIHSHVLKTGHVKNS 435

Query: 363 KHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
           +    +V + G+ G + +AY+   E   +   + W  +++    H   G A + I ++FE
Sbjct: 436 RISSSLVTMYGKCGSMLDAYQVFRETK-EHNVVCWTAMITVFHQH---GCANEAI-KLFE 490

Query: 423 --LDDSHGGDYVILSNL---CARAGRWED 446
             L++    +Y+   ++   C+  G+ +D
Sbjct: 491 EMLNEGVVPEYITFVSVLSACSHTGKIDD 519


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 196/557 (35%), Positives = 314/557 (56%), Gaps = 41/557 (7%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           +K++H   I+  + +D  +   LI+   +      +E A  +FD +   D+V + +M+  
Sbjct: 151 VKEVHDDAIRCGMMSDAFLGNALIHAYGK---CKCVEGARRVFDDLVVKDVVSWTSMSSC 207

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           Y     P   + +F E+  +G+ P+  +  S+L AC+ +  + L+ G+ +H FA++ G+ 
Sbjct: 208 YVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSEL--KDLKSGRAIHGFAVRHGMI 265

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLF--- 213
            N++VC+ L++LYA C  V+ AR +F+ +    VVS+N ++TAY  +   ++ L+LF   
Sbjct: 266 ENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQM 325

Query: 214 --------------------------------RELQERNLKPTDVTMLSALSSCALLGSL 241
                                           R++Q    KP  +T+ S L +C++L SL
Sbjct: 326 SSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESL 385

Query: 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
            +GK +H Y+ ++ L   +   TAL+ M+AKCG L+ + +VFD +  KD  AW+ MI+A 
Sbjct: 386 RMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIAN 445

Query: 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG 361
           A HG G + +L+FE M+++ + P+ +TF G+L  CSH+ LV+EG   F SM   + + P 
Sbjct: 446 AMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPD 505

Query: 362 IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421
             HY CMVD+  RAGRL EAY FI  +P++ T   W  LL +C  + N+ LAK    ++F
Sbjct: 506 ANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKISANKLF 565

Query: 422 ELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGD 481
           E++ ++ G+YV L N+   A  W +    R LMK+RG+ K PGCS ++V + V  F  GD
Sbjct: 566 EIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQVGDRVHTFVVGD 625

Query: 482 GVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLL 541
             +  S  +   LDEL +++K  GY PDT  V   D++ EEK  +L  HSEKLA+ FG+L
Sbjct: 626 KNNMESDKIYNFLDELGEKMKSAGYKPDTDYVLQ-DIDQEEKAESLCSHSEKLAVAFGIL 684

Query: 542 NTPPGTTIRVVKNLRVC 558
           N    ++IRV KNLR+C
Sbjct: 685 NLNGQSSIRVFKNLRIC 701



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 170/342 (49%), Gaps = 12/342 (3%)

Query: 13  PPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSM 72
           PP    T++  + S+  + TS +    +    I +HL   L +L   +N           
Sbjct: 33  PPFFSITHSTQSSSIWKQLTSTKVAPSV-PTNIPSHL--GLRLLKAALN-------VGDF 82

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
             A  LFD IP+PD    +T+   ++    P  AI L+  L   G+ P +  F ++ KAC
Sbjct: 83  RRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKAC 142

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
              G  +    K++H  AI+ G+ S+ ++   LI+ Y +C  VE ARR+F+++    VVS
Sbjct: 143 GASGDAS--RVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVS 200

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           + ++ + Y     P   L++F E+    +KP  VT+ S L +C+ L  L  G+ IH +  
Sbjct: 201 WTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAV 260

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           ++G+ + V V +AL+ ++A+C  +  A  VFD M  +D  +W+ ++ AY T+ +  K + 
Sbjct: 261 RHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLA 320

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD 354
           +F +M    V  DE T+  ++  C   G  ++       M++
Sbjct: 321 LFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQN 362



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 96/230 (41%), Gaps = 44/230 (19%)

Query: 22  PNAL---SLLPRCT---SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PN +   S LP C+   S R  K++H    +  L  DL  +T L+    +      +  +
Sbjct: 367 PNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAK---CGDLNLS 423

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
             +FD I   D+V +NTM    +        + LF  +L SG+ P+  +F  +L  C+  
Sbjct: 424 RNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCS-- 481

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
            +  +EEG Q+         NS                     R   +++ EP    Y  
Sbjct: 482 HSRLVEEGLQI--------FNS-------------------MGR---DHLVEPDANHYAC 511

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245
           ++  ++R+ R +EA   +  +Q   ++PT     + L +C +  +++L K
Sbjct: 512 MVDVFSRAGRLHEA---YEFIQRMPMEPTASAWGALLGACRVYKNVELAK 558


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 202/537 (37%), Positives = 300/537 (55%), Gaps = 11/537 (2%)

Query: 27  LLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
            L  CT  R +   + I    + T ++ +  V T L++   +    +    A  +F R+ 
Sbjct: 67  FLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTD---AASVFLRMS 123

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
             D+V ++ M   Y+R+  P  A+ LF ++   G+ P+  +  S L ACA +G   L  G
Sbjct: 124 HRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGD--LRSG 181

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
             +H      G+ S + V T L+NLY +C  +EAA   F  I E  VV+++AI  AYAR+
Sbjct: 182 ALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYARN 241

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG--LDKYVK 261
            R  +A+ +   +    L P   T +S L +CA + +L  G+ IHE  +  G  L+  V 
Sbjct: 242 DRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESDVY 301

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V TAL++M++KCG L  A  +FD ++  D   W+++I   A HGQ  K++ +FE M    
Sbjct: 302 VLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEG 361

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           + P  ITF  +L+ACSH G++D+G  +F S    +GI P  +H+GCMVDLLGRAG + ++
Sbjct: 362 LQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDS 421

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
              +  +P +  P+ W   L +C ++ N+  A    E +F+LD      YV+LSN+ A+A
Sbjct: 422 EDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRKRAPYVLLSNMYAKA 481

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           GRW DV  +R+ M+    +K  G S IEV + V EF SGD  H    ++   L  L K +
Sbjct: 482 GRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTKLM 541

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K  GYVPDT +V H D++ E KEI + YHSEKLA+ F LL TP G+ IRVVKNLRVC
Sbjct: 542 KEAGYVPDTEMVLH-DVKQEVKEIMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRVC 597



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 172/347 (49%), Gaps = 12/347 (3%)

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
           FD +P  DIV +N +   Y  ++   R    F  +L  G+ P +      L   AC  A 
Sbjct: 18  FDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPGEVGISIFLS--ACTDAR 75

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
            +  G+ +    +  G+     V T L+++Y +      A  +F  +S   VV+++A++ 
Sbjct: 76  EITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFLRMSHRDVVAWSAMVA 135

Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
           AYAR+  P EAL LFR++    + P  VT++S L +CA LG L  G  +H+ ++  G+  
Sbjct: 136 AYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQS 195

Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
            V V TAL++++ KCGR++ AV  F  +  K+  AWSA+  AYA + +   +I +   M 
Sbjct: 196 GVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMD 255

Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG-----IKHYGCMVDLLG 373
              + P+  TF+ +L AC+    + +G      + ++  ++ G     +     +V++  
Sbjct: 256 LEGLVPNSTTFVSVLDACAAIAALKQG----RRIHERTQVLGGGLESDVYVLTALVNMYS 311

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
           + G L  A    D++      +LW +L+++ + H     A ++ ER+
Sbjct: 312 KCGNLALAGDMFDKIA-HLDLVLWNSLIATNAQHGQTEKALELFERM 357



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 135/256 (52%), Gaps = 2/256 (0%)

Query: 165 LINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT 224
           +++ Y++  ++ A R+ F+ +    +VS+NA+I AY  +   +     FR +  + + P 
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPG 60

Query: 225 DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFD 284
           +V +   LS+C     + +G+ I   I   G+++   V TAL+ M+ K G   DA SVF 
Sbjct: 61  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFL 120

Query: 285 NMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDE 344
            MS +D  AWSAM+ AYA +G   +++ +F +M    V+P+++T +  L AC+  G +  
Sbjct: 121 RMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRS 180

Query: 345 GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSC 404
           G    +   +  GI  G+     +V+L G+ GR++ A     ++ ++   + W  + ++ 
Sbjct: 181 G-ALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQI-VEKNVVAWSAISAAY 238

Query: 405 SSHNNLGLAKQVIERI 420
           + ++    A +V+ R+
Sbjct: 239 ARNDRNRDAIRVLHRM 254


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 200/505 (39%), Positives = 285/505 (56%), Gaps = 22/505 (4%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRS-----------KTPIRAIFLFVELLN----SGLL 119
           A  LFD++P  D + +NTM  GY++            ++P R +F +  +++    +G+L
Sbjct: 223 ARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGML 282

Query: 120 PDDYSFPSLLKACACVGAEALEEGK-QLHCFAIKLGLNS-----NLYVCTTLINLYAECS 173
            +  +F   +     V   A+  G  Q     I   L       N+    T+I  Y +  
Sbjct: 283 DEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIG 342

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
           D+  AR+ F+ + +   VS+ AII  YA+S    EAL++F E+++        T   ALS
Sbjct: 343 DIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALS 402

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
           +CA + +L+LGK IH    K G      V  AL+ M+ KCG +D+A   F+ +  KD  +
Sbjct: 403 TCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVS 462

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           W+ M+  YA HG G +++ +FE M  A V PDEIT +G+L ACSHTGL+D G  YFYSM 
Sbjct: 463 WNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMT 522

Query: 354 DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413
             YG++P  KHY CM+DLLGRAGRL+EA   I  +P +     W  LL +   H N  L 
Sbjct: 523 KDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELG 582

Query: 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNV 473
           ++  E +F+++  + G YV+LSNL A +GRW D D +R  M+D GV KVPG S +EV N 
Sbjct: 583 EKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNK 642

Query: 474 VREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEK 533
           +  F  GD  H     +   L+EL  +++  GYV  T LV H D+E+EEKE  L+YHSEK
Sbjct: 643 IHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLH-DVEEEEKEHMLKYHSEK 701

Query: 534 LAITFGLLNTPPGTTIRVVKNLRVC 558
           LA+ FG+L  P G  IRV+KNLRVC
Sbjct: 702 LAVAFGILTIPGGRPIRVMKNLRVC 726



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 92/413 (22%), Positives = 180/413 (43%), Gaps = 41/413 (9%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSK--TPIRAIFLFVELLNS----GLLPDDYSFPSL 128
           A  LFD +PE D+V +N++  GY+++      R +F  +   NS    GLL        +
Sbjct: 130 ARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRI 189

Query: 129 LKACACVGAEALEEGKQLHCF------AIKLGLNSNLY---------VCTTLINLYAECS 173
            +AC    +++  +    +C         KLG    L+            T+I+ YA+  
Sbjct: 190 EEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGG 249

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
            +  ARR+F+      V ++ A+++ Y ++   +EA + F E+ E+N    +V+  + ++
Sbjct: 250 GLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKN----EVSYNAMIA 305

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
                  +D+ + + E +    +  +      +I  + + G +  A   FD M  +D  +
Sbjct: 306 GYVQTKKMDIARELFESMPCRNISSW----NTMITGYGQIGDIAQARKFFDMMPQRDCVS 361

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           W+A+I  YA  G   +++ MF E+ +   S +  TF   L  C+    ++ G    +   
Sbjct: 362 WAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELG-KQIHGQA 420

Query: 354 DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413
            K G   G      ++ +  + G +DEA    + +  K   + W T+L+  + H   G  
Sbjct: 421 VKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDV-VSWNTMLAGYARH---GFG 476

Query: 414 KQVIERIFELDDSHG--GDYVILSNL---CARAGRWE-DVDYLRKLMKDRGVL 460
           +Q +  +FE   + G   D + +  +   C+  G  +   +Y   + KD GV+
Sbjct: 477 RQALT-VFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVI 528



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 120/251 (47%), Gaps = 20/251 (7%)

Query: 176 EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSC 235
           ++A  +F  +     VSYNA+I+ Y R+S+ N A +LF ++ ER+L   +V +   + +C
Sbjct: 66  DSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNC 125

Query: 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWS 295
            L  +  L   + E        K V    +L+  +A+ G +D+A  VFDNM  K++ +W+
Sbjct: 126 RLGDARRLFDLMPE--------KDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWN 177

Query: 296 AMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA-CSHTGLVDEGWNYFYSMRD 354
            ++ AY  +G+  ++ L+FE    ++   D I++  L+        L D  W +     D
Sbjct: 178 GLLAAYVHNGRIEEACLLFE----SKSDWDLISWNCLMGGFVRKKKLGDARWLF-----D 228

Query: 355 KYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAK 414
           K  +   I  +  M+    + G L +A R  DE P +     W  ++S    +  L  AK
Sbjct: 229 KMPVRDAIS-WNTMISGYAQGGGLSQARRLFDESPTRDV-FTWTAMVSGYVQNGMLDEAK 286

Query: 415 QVIERIFELDD 425
              + + E ++
Sbjct: 287 TFFDEMPEKNE 297



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 138/326 (42%), Gaps = 28/326 (8%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           +F+ +P    V +N M  GY R+     A  LF ++    L   +      ++ C    A
Sbjct: 71  VFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDA 130

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
             L            L    ++    +L++ YA+   V+ AR +F+N+ E   +S+N ++
Sbjct: 131 RRL----------FDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLL 180

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
            AY  + R  EA  LF    + +L   +  M   +        L   +W+ +   K  + 
Sbjct: 181 AAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRK----KKLGDARWLFD---KMPVR 233

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
             +  NT +I  +A+ G L  A  +FD    +D   W+AM+  Y  +G   ++   F+EM
Sbjct: 234 DAISWNT-MISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM 292

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
            +     +E+++  ++     T  +D     F SM  +      I  +  M+   G+ G 
Sbjct: 293 PE----KNEVSYNAMIAGYVQTKKMDIARELFESMPCR-----NISSWNTMITGYGQIGD 343

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSS 403
           + +A +F D +P +   + W  +++ 
Sbjct: 344 IAQARKFFDMMPQRDC-VSWAAIIAG 368



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 11/166 (6%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           KQIH   +K        V   L+    +     S++ A+  F+ I E D+V +NTM  GY
Sbjct: 414 KQIHGQAVKMGYGTGCFVGNALLAMYFK---CGSIDEANDTFEGIEEKDVVSWNTMLAGY 470

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ-LHCFAIKLGL- 155
           +R     +A+ +F  +  +G+ PD+ +   +L AC+  G   L+ G +  +      G+ 
Sbjct: 471 ARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTG--LLDRGTEYFYSMTKDYGVI 528

Query: 156 -NSNLYVCTTLINLYAECSDVEAARRIFENIS-EPCVVSYNAIITA 199
             S  Y C  +I+L      +E A+ +  N+  +P   S+ A++ A
Sbjct: 529 PTSKHYTC--MIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGA 572



 Score = 39.3 bits (90), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 42/212 (19%), Positives = 83/212 (39%), Gaps = 55/212 (25%)

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           +K N A I  H + G  D A+ VF+ M  + + +++AMI  Y  + + + +  +F++M +
Sbjct: 50  LKWNKA-ISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPE 108

Query: 320 AQV---------------------------SPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
             +                             D +++  LL   +  G VDE    F +M
Sbjct: 109 RDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNM 168

Query: 353 RDK-----YGIVPGIKHYG---------------------CMVDLLGRAGRLDEAYRFID 386
            +K      G++    H G                     C++    R  +L +A    D
Sbjct: 169 PEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFD 228

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
           ++P++   I W T++S  +    L  A+++ +
Sbjct: 229 KMPVRDA-ISWNTMISGYAQGGGLSQARRLFD 259


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 193/514 (37%), Positives = 302/514 (58%), Gaps = 35/514 (6%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRS-----------KTPIRAIFLFVELLN----S 116
           ++ A  LFDR+P  D + +N M  GY+++           + PIR +F +  +++    +
Sbjct: 231 LDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQN 290

Query: 117 GLL------------PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTT 164
           G+L             ++ S+ +++     V ++ +E+ ++L  F      N++ +   T
Sbjct: 291 GMLDEATRIFEEMPEKNEVSWNAMI--AGYVQSQQIEKAREL--FDQMPSRNTSSW--NT 344

Query: 165 LINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT 224
           ++  YA+C +++ A+ +F+ + +   +S+ A+I+ YA+S +  EAL LF +++       
Sbjct: 345 MVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILN 404

Query: 225 DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFD 284
              +  ALSSCA + +L+LGK +H  + K G         AL+ M+ KCG +++A  VF+
Sbjct: 405 RSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFE 464

Query: 285 NMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDE 344
           +++ KD  +W+ MI  YA HG G +++ +FE M K  + PD++T +G+L ACSHTGLVD+
Sbjct: 465 DITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACSHTGLVDK 523

Query: 345 GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSC 404
           G  YF SM   YGI    KHY CM+DLLGRAGRLDEA   +  +P       W  LL + 
Sbjct: 524 GMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGAS 583

Query: 405 SSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPG 464
             H +  L ++  E++FE++  + G YV+LSNL A +GRW +V  +R  M+D+GV KVPG
Sbjct: 584 RIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPG 643

Query: 465 CSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKE 524
            S +E+ N    F  GD  H  +  +   L+EL  ELK  G+V  T LV H D+E+EEKE
Sbjct: 644 YSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLH-DVEEEEKE 702

Query: 525 IALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             L+YHSEKLA+ FG+L+ PPG  IRV+KNLRVC
Sbjct: 703 HMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVC 736



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 155/301 (51%), Gaps = 21/301 (6%)

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130
           +++ A +LFD +P+ D + +  M  GY++S     A+ LF+++   G + +  +    L 
Sbjct: 354 NIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALS 413

Query: 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV 190
           +CA +   ALE GKQLH   +K G  +       L+ +Y +C  +E A  +FE+I+E  +
Sbjct: 414 SCAEIA--ALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDI 471

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWIHE 249
           VS+N +I  YAR     EAL+LF  ++   +KP DVT++  LS+C+  G +D G ++ + 
Sbjct: 472 VSWNTMIAGYARHGFGKEALALFESMK-MTIKPDDVTLVGVLSACSHTGLVDKGMEYFNS 530

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG-KDTQAWSAMIVAYATHGQ-- 306
             + YG+    K  T +ID+  + GRLD+A+++  +M    D   W A++ A   HG   
Sbjct: 531 MYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTE 590

Query: 307 -GHKSILMFEEMMKAQVSPDE---ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGI--VP 360
            G K+     EM      PD       L  LYA S  G   E       MRDK G+  VP
Sbjct: 591 LGEKAAEKVFEM-----EPDNSGMYVLLSNLYAAS--GRWREVREMRSKMRDK-GVKKVP 642

Query: 361 G 361
           G
Sbjct: 643 G 643



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 176/382 (46%), Gaps = 49/382 (12%)

Query: 69  TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSL 128
             ++  A  LF+++PE D+V +N M  G++++     A  +F ++    L+ ++ S+  L
Sbjct: 135 NGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM----LVKNEISWNGL 190

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP 188
           L A    G   +E+ ++L  F  K+      + C  L+  Y     ++ AR +F+ +   
Sbjct: 191 LSAYVQNG--RIEDARRL--FDSKMDWEIVSWNC--LMGGYVRKKRLDDARSLFDRMPVR 244

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL-GSLDLGKWI 247
             +S+N +IT YA++   +EA  LF EL  R     DV   +A+ S  +  G LD    I
Sbjct: 245 DKISWNIMITGYAQNGLLSEARRLFEELPIR-----DVFAWTAMVSGFVQNGMLDEATRI 299

Query: 248 HE----------------YIKKYGLDKYVKV-------NTA----LIDMHAKCGRLDDAV 280
            E                Y++   ++K  ++       NT+    ++  +A+CG +D A 
Sbjct: 300 FEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAK 359

Query: 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG 340
            +FD M  +D  +W+AMI  YA  GQ  +++ +F +M +     +       L +C+   
Sbjct: 360 ILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIA 419

Query: 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400
            ++ G    +    K G   G      ++ + G+ G ++EA+   +++  K   + W T+
Sbjct: 420 ALELG-KQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDI-VSWNTM 477

Query: 401 LSSCSSHNNLGLAKQVIERIFE 422
           ++  + H   G  K+ +  +FE
Sbjct: 478 IAGYARH---GFGKEALA-LFE 495



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 151/308 (49%), Gaps = 26/308 (8%)

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
           + +L     +++ Y +  ++ AAR +F  + E  VVS+NA+++ +A++    EA  +F +
Sbjct: 119 DRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQ 178

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
           +  +N    +++    LS+    G ++  + + +      +D  +     L+  + +  R
Sbjct: 179 MLVKN----EISWNGLLSAYVQNGRIEDARRLFDS----KMDWEIVSWNCLMGGYVRKKR 230

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP--DEITFLGLL 333
           LDDA S+FD M  +D  +W+ MI  YA +G   ++  +FEE+      P  D   +  ++
Sbjct: 231 LDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEEL------PIRDVFAWTAMV 284

Query: 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
                 G++DE    F  M +K  +      +  M+    ++ ++++A    D++P ++T
Sbjct: 285 SGFVQNGMLDEATRIFEEMPEKNEV-----SWNAMIAGYVQSQQIEKARELFDQMPSRNT 339

Query: 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLR-K 452
              W T+++  +   N+  AK + + + + D      +  + +  A++G+ E+  +L  K
Sbjct: 340 SS-WNTMVTGYAQCGNIDQAKILFDEMPQRDCI---SWAAMISGYAQSGQSEEALHLFIK 395

Query: 453 LMKDRGVL 460
           + +D G+L
Sbjct: 396 MKRDGGIL 403



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 119/266 (44%), Gaps = 49/266 (18%)

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           ++S++      I+ Y      E+A  +F  +     V+YNA+I+ Y  +++ + A  +F 
Sbjct: 56  VDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFE 115

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
           ++ +R+L   +V MLS                                       + K G
Sbjct: 116 KMPDRDLISWNV-MLSG--------------------------------------YVKNG 136

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
            L  A ++F+ M  KD  +W+AM+  +A +G   ++  +F++M+      +EI++ GLL 
Sbjct: 137 NLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML----VKNEISWNGLLS 192

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           A    G +++    F S  D + IV     + C++    R  RLD+A    D +P++   
Sbjct: 193 AYVQNGRIEDARRLFDSKMD-WEIVS----WNCLMGGYVRKKRLDDARSLFDRMPVRD-K 246

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERI 420
           I W  +++  + +  L  A+++ E +
Sbjct: 247 ISWNIMITGYAQNGLLSEARRLFEEL 272


>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 1000

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 202/534 (37%), Positives = 309/534 (57%), Gaps = 11/534 (2%)

Query: 21  TPNAL---SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEH 74
           +PN L   S L  C+S   L   K +HA+ ++  LQ +L V   LI   T     +SME 
Sbjct: 344 SPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLI---TMYGKCNSMED 400

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +F  +P  DIV +N +  GY+  +   +A+ +F  + ++G+ P+  +  ++  + A 
Sbjct: 401 AEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFAS 460

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
              +    G+ LH + I+ G  S+ YV  +LI +YA+C ++E++  IF +I+   +VS+N
Sbjct: 461 SN-DLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWN 519

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           AII A  +     EAL LF ++Q    K   V +   LSSCA L SL+ G  +H    K 
Sbjct: 520 AIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKS 579

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
           GLD    V  A +DM+ KCG++D+ + V  + + +  Q W+ +I  YA +G   ++   F
Sbjct: 580 GLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETF 639

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
           ++M+     PD +TF+ LL ACSH GLVD+G +Y+ SM   +G+ PGIKH  C+VDLLGR
Sbjct: 640 KQMVATGRKPDYVTFVALLSACSHAGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGR 699

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
            GR  EA +FI+E+P+    ++WR+LLSS  +H NL + ++  +++ ELD      YV+L
Sbjct: 700 LGRFAEAEKFIEEMPVLPNDLIWRSLLSSSRTHKNLEIGRKTAKKLLELDPFDDSAYVLL 759

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
           SNL A   RW DVD LR  MK   + K P CS +++ N V  F  GD  H ++  +   L
Sbjct: 760 SNLYATNARWADVDKLRSHMKTININKRPACSWLKLKNEVSTFGIGDRGHKHAEKIYAKL 819

Query: 495 DELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTT 548
           DE++ +L+ VGY+ DTS   H D ++E+KE  L  HSEKLA+ +GL+  P G+T
Sbjct: 820 DEMLLKLREVGYIADTSSALH-DTDEEQKEQNLWNHSEKLALAYGLIVVPEGST 872



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 149/294 (50%), Gaps = 5/294 (1%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           Q+ +  I + LQN ++V   LI   T       +  A  LFDR+ E D + +N M   YS
Sbjct: 166 QVASQVIVSGLQNQVSVANSLI---TMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYS 222

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
                 +   +F ++ + GL PD  +  SL+  CA   ++    G  +H   ++  L+S+
Sbjct: 223 HQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCA--SSDHFSHGSGIHSLCLRSSLDSS 280

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
           + V   L+N+Y+    +  A  +F N+S   ++S+N +I++Y ++    +AL    +L  
Sbjct: 281 VTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFH 340

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
            N  P  +T  SAL +C+  G+L  GK +H  + +  L + + V  +LI M+ KC  ++D
Sbjct: 341 TNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMED 400

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
           A  VF +M   D  +++ +I  YA    G K++ +F  M  A + P+ IT + +
Sbjct: 401 AEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINI 454



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 164/350 (46%), Gaps = 6/350 (1%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           IHA+T +  L  ++ + T L++        S    A  LF  +PE ++V +  +    S 
Sbjct: 66  IHALTHRAGLMGNVYIGTALLHLYGSRGIVSD---AQRLFWEMPERNVVSWTALMVALSS 122

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
           +     A+  + ++   G+  +  +F +++  C  +  E    G Q+    I  GL + +
Sbjct: 123 NGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEV--PGLQVASQVIVSGLQNQV 180

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
            V  +LI ++     V  A ++F+ + E   +S+NA+I+ Y+     ++   +F +++  
Sbjct: 181 SVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHH 240

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
            L+P   T+ S +S CA       G  IH    +  LD  V V  AL++M++  G+L DA
Sbjct: 241 GLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDA 300

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
             +F NMS +D  +W+ MI +Y  +     ++    ++     SP+ +TF   L ACS  
Sbjct: 301 EFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSP 360

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389
           G + +G    +++  +  +   +     ++ + G+   +++A +    +P
Sbjct: 361 GALIDG-KMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMP 409



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 157/350 (44%), Gaps = 7/350 (2%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           + DR P      + T   G  R      A  +   +   G+    ++  SL+ AC   G 
Sbjct: 1   MADRTPST----WYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGR 56

Query: 138 -EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
            E +  G  +H    + GL  N+Y+ T L++LY     V  A+R+F  + E  VVS+ A+
Sbjct: 57  DEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTAL 116

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           + A + +    EAL  +R+++   +        + +S C  L +   G  +   +   GL
Sbjct: 117 MVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGL 176

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
              V V  +LI M    GR+ DA  +FD M   DT +W+AMI  Y+  G   K  L+F +
Sbjct: 177 QNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSD 236

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M    + PD  T   L+  C+ +     G +  +S+  +  +   +     +V++   AG
Sbjct: 237 MRHHGLRPDATTLCSLMSVCASSDHFSHG-SGIHSLCLRSSLDSSVTVINALVNMYSAAG 295

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
           +L +A  F+     +   I W T++SS   + N   A + + ++F  ++S
Sbjct: 296 KLSDA-EFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNES 344


>gi|222616424|gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
          Length = 1215

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 202/534 (37%), Positives = 309/534 (57%), Gaps = 11/534 (2%)

Query: 21   TPNAL---SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEH 74
            +PN L   S L  C+S   L   K +HA+ ++  LQ +L V   LI   T     +SME 
Sbjct: 646  SPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLI---TMYGKCNSMED 702

Query: 75   AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
            A  +F  +P  DIV +N +  GY+  +   +A+ +F  + ++G+ P+  +  ++  + A 
Sbjct: 703  AEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFAS 762

Query: 135  VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
               +    G+ LH + I+ G  S+ YV  +LI +YA+C ++E++  IF +I+   +VS+N
Sbjct: 763  SN-DLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWN 821

Query: 195  AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
            AII A  +     EAL LF ++Q    K   V +   LSSCA L SL+ G  +H    K 
Sbjct: 822  AIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKS 881

Query: 255  GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
            GLD    V  A +DM+ KCG++D+ + V  + + +  Q W+ +I  YA +G   ++   F
Sbjct: 882  GLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETF 941

Query: 315  EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
            ++M+     PD +TF+ LL ACSH GLVD+G +Y+ SM   +G+ PGIKH  C+VDLLGR
Sbjct: 942  KQMVATGRKPDYVTFVALLSACSHAGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGR 1001

Query: 375  AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
             GR  EA +FI+E+P+    ++WR+LLSS  +H NL + ++  +++ ELD      YV+L
Sbjct: 1002 LGRFAEAEKFIEEMPVLPNDLIWRSLLSSSRTHKNLEIGRKTAKKLLELDPFDDSAYVLL 1061

Query: 435  SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
            SNL A   RW DVD LR  MK   + K P CS +++ N V  F  GD  H ++  +   L
Sbjct: 1062 SNLYATNARWADVDKLRSHMKTININKRPACSWLKLKNEVSTFGIGDRGHKHAEKIYAKL 1121

Query: 495  DELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTT 548
            DE++ +L+ VGY+ DTS   H D ++E+KE  L  HSEKLA+ +GL+  P G+T
Sbjct: 1122 DEMLLKLREVGYIADTSSALH-DTDEEQKEQNLWNHSEKLALAYGLIVVPEGST 1174



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 149/294 (50%), Gaps = 5/294 (1%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           Q+ +  I + LQN ++V   LI   T       +  A  LFDR+ E D + +N M   YS
Sbjct: 468 QVASQVIVSGLQNQVSVANSLI---TMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYS 524

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
                 +   +F ++ + GL PD  +  SL+  CA   ++    G  +H   ++  L+S+
Sbjct: 525 HQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCA--SSDHFSHGSGIHSLCLRSSLDSS 582

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
           + V   L+N+Y+    +  A  +F N+S   ++S+N +I++Y ++    +AL    +L  
Sbjct: 583 VTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFH 642

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
            N  P  +T  SAL +C+  G+L  GK +H  + +  L + + V  +LI M+ KC  ++D
Sbjct: 643 TNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMED 702

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
           A  VF +M   D  +++ +I  YA    G K++ +F  M  A + P+ IT + +
Sbjct: 703 AEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINI 756



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 164/350 (46%), Gaps = 6/350 (1%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           IHA+T +  L  ++ + T L++        S    A  LF  +PE ++V +  +    S 
Sbjct: 368 IHALTHRAGLMGNVYIGTALLHLYGSRGIVSD---AQRLFWEMPERNVVSWTALMVALSS 424

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
           +     A+  + ++   G+  +  +F +++  C  +  E    G Q+    I  GL + +
Sbjct: 425 NGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEV--PGLQVASQVIVSGLQNQV 482

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
            V  +LI ++     V  A ++F+ + E   +S+NA+I+ Y+     ++   +F +++  
Sbjct: 483 SVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHH 542

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
            L+P   T+ S +S CA       G  IH    +  LD  V V  AL++M++  G+L DA
Sbjct: 543 GLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDA 602

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
             +F NMS +D  +W+ MI +Y  +     ++    ++     SP+ +TF   L ACS  
Sbjct: 603 EFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSP 662

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389
           G + +G    +++  +  +   +     ++ + G+   +++A +    +P
Sbjct: 663 GALIDG-KMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMP 711



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 160/350 (45%), Gaps = 3/350 (0%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           LFD + +     + T   G  R  +  +A  +   +   G+    ++  SL+ AC   G 
Sbjct: 299 LFDEMADRTPSTWYTAVSGCVRCGSHGKAFEMLRGMREPGVPLSGFALASLVTACERRGR 358

Query: 138 -EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
            E +  G  +H    + GL  N+Y+ T L++LY     V  A+R+F  + E  VVS+ A+
Sbjct: 359 DEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTAL 418

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           + A + +    EAL  +R+++   +        + +S C  L +   G  +   +   GL
Sbjct: 419 MVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGL 478

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
              V V  +LI M    GR+ DA  +FD M   DT +W+AMI  Y+  G   K  L+F +
Sbjct: 479 QNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSD 538

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M    + PD  T   L+  C+ +     G +  +S+  +  +   +     +V++   AG
Sbjct: 539 MRHHGLRPDATTLCSLMSVCASSDHFSHG-SGIHSLCLRSSLDSSVTVINALVNMYSAAG 597

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
           +L +A  F+     +   I W T++SS   + N   A + + ++F  ++S
Sbjct: 598 KLSDA-EFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNES 646


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 189/480 (39%), Positives = 288/480 (60%), Gaps = 14/480 (2%)

Query: 35  RGLKQIHAVTIKTHLQNDLNVLTKLINF---CTQNPTTSSMEHAHLLFDRIPEPDIVLFN 91
           R  +  H    K  L ND + +  ++     C +N        A  +FD I E D+V +N
Sbjct: 134 RMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGV------ARKVFDEITEKDLVSWN 187

Query: 92  TMARGYSRSKTPIRAIFLFVELLN-SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFA 150
           ++  GY++      A+ +F  L   SG  PD+ S  S+L AC  +G   LE G+ +  F 
Sbjct: 188 SLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGD--LELGRWVEGFV 245

Query: 151 IKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEAL 210
           ++ G+  N Y+ + LI++Y++C ++ ++RRIF+ +     +++NA I+AYA++   +EA+
Sbjct: 246 VERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAI 305

Query: 211 SLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270
           SLF  ++E  + P  VT+ + LS+CA +G+LDLGK + EY    GL   + V TALIDM+
Sbjct: 306 SLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMY 365

Query: 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK--AQVSPDEIT 328
           AKCG L+ A  VF++M  K+  +W+AMI A A+HG+  +++ +FE M        P++IT
Sbjct: 366 AKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDIT 425

Query: 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388
           F+ LL AC H GLVDEG+  F  M   +G+VP I+HY CMVDLL RAG L EA+  I+++
Sbjct: 426 FVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKM 485

Query: 389 PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVD 448
           P K   +    L S+C    N+ + ++VI+ + ELD S+ G+Y+I S +      W+D  
Sbjct: 486 PEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAA 545

Query: 449 YLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVP 508
            +R LM++ GV K PGCS IEV N +REF SGDG+   S D++  +D L +ELK  GYVP
Sbjct: 546 RMRALMRENGVTKTPGCSWIEVGNQLREFLSGDGLTLDSIDVRNIIDLLYEELKKEGYVP 605



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 231/433 (53%), Gaps = 35/433 (8%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI-P 83
           LSLL +C S + L+QIH        Q  ++ + K  +  +Q+ +     ++ L+F  I P
Sbjct: 25  LSLLKQCPSTKTLQQIHT-------QFTIHSIHKPNHLLSQSISLKDFTYSTLIFSHITP 77

Query: 84  EPDIVLFNTMARGYSRS--KTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
            P+   FN M R  + +    P+  + L+ ++    + P++++FP +  ACA +  E + 
Sbjct: 78  HPNDYAFNIMLRATTTTWHDYPL-TLHLYHQMKTLNISPNNFTFPFVFLACANL--EEIR 134

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
             +  HC   KLGL+++ +   +++ +Y  C +   AR++F+ I+E  +VS+N++++ YA
Sbjct: 135 MARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYA 194

Query: 202 RSSRPNEALSLFRELQERN-LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
           +     EA+ +F  L+E +  +P +++++S L +C  LG L+LG+W+  ++ + G+    
Sbjct: 195 KLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNS 254

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            + +ALI M++KCG L  +  +FD M  +D   W+A I AYA +G   ++I +F  M + 
Sbjct: 255 YIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKEN 314

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH----YGCMVDLLGRAG 376
            V P+++T   +L AC+  G +D G        D+Y    G++H       ++D+  + G
Sbjct: 315 GVDPNKVTLTAVLSACASIGALDLG-----KQMDEYATHRGLQHDIFVATALIDMYAKCG 369

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD------ 430
            L+ A R  +++P K+    W  ++S+ +SH   G AK+ +  +FE     GG       
Sbjct: 370 SLESAQRVFNDMPRKNDAS-WNAMISALASH---GKAKEALS-LFERMSDEGGSARPNDI 424

Query: 431 -YVILSNLCARAG 442
            +V L + C  AG
Sbjct: 425 TFVSLLSACVHAG 437


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 186/487 (38%), Positives = 290/487 (59%), Gaps = 4/487 (0%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +E A  LF R  E D V ++ M +G +++     AI  F E+   GL  D Y F S+L A
Sbjct: 218 IEDALQLF-RGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPA 276

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C  +GA  + +G+Q+H   I+  L  ++YV + LI++Y +C  +  A+ +F+ + +  VV
Sbjct: 277 CGGLGA--INDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVV 334

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+ A++  Y ++ R  EA+ +F ++Q   + P   T+  A+S+CA + SL+ G   H   
Sbjct: 335 SWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKA 394

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
              GL  Y+ V+ +L+ ++ KCG +DD+  +F+ M+ +D  +W+AM+ AYA  G+  ++I
Sbjct: 395 ITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAI 454

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +F++M++  + PD +T  G++ ACS  GLV++G  YF  M ++YGIVP   HY CM+DL
Sbjct: 455 QLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDL 514

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
             R+GR++EA  FI+ +P +   I W TLLS+C +  NL + K   E + ELD  H   Y
Sbjct: 515 FSRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGY 574

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
            +LS++ A  G+W+ V  LR+ MK++ V K PG S I+    +  F + D    YS  + 
Sbjct: 575 TLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWIKWKGKLHSFSADDESSPYSDQIY 634

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
             L+EL +++   GY PDTS VHH D+E+  K   L  HSE+LAI FGL+  P G  IRV
Sbjct: 635 AKLEELYQKIIDNGYKPDTSFVHH-DVEEAVKIKMLNCHSERLAIAFGLIFVPSGLPIRV 693

Query: 552 VKNLRVC 558
            KNLRVC
Sbjct: 694 GKNLRVC 700



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 110/423 (26%), Positives = 205/423 (48%), Gaps = 45/423 (10%)

Query: 79  FDRIPEPDIVLFNTMARGYSRSK---TPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
           F+++P+ D V +N +  GYS S      ++A    ++  +S L     +  ++LK  +  
Sbjct: 92  FEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNL--TRVTLMTMLKLSSSN 149

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN- 194
           G  +L  GKQ+H   IKLG  S L V + L+++Y++   +  A+++F  + +   V YN 
Sbjct: 150 GHVSL--GKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNT 207

Query: 195 -----------------------------AIITAYARSSRPNEALSLFRELQERNLKPTD 225
                                        A+I   A++    EA+  FRE++   LK   
Sbjct: 208 LMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQ 267

Query: 226 VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285
               S L +C  LG+++ G+ IH  I +  L  ++ V +ALIDM+ KC  L  A +VFD 
Sbjct: 268 YPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDR 327

Query: 286 MSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
           M  K+  +W+AM+V Y   G+  +++ +F +M ++ + PD  T    + AC++   ++EG
Sbjct: 328 MKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEG 387

Query: 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS 405
            + F+      G++  I     +V L G+ G +D++ R  +E+ ++   + W  ++S+ +
Sbjct: 388 -SQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRD-EVSWTAMVSAYA 445

Query: 406 SHNNLGLAKQVIERIFELDDSHGGDYVILSNL---CARAGRWEDVD-YLRKLMKDRGVLK 461
                  A Q+ +++ +L     G  V L+ +   C+RAG  E    Y   ++ + G++ 
Sbjct: 446 QFGRAVEAIQLFDKMVQLGLKPDG--VTLTGVISACSRAGLVEKGQRYFELMINEYGIVP 503

Query: 462 VPG 464
             G
Sbjct: 504 SNG 506



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 158/286 (55%), Gaps = 12/286 (4%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDR 81
           S+LP C     +   +QIHA  I+T+LQ+ + V + LI+ +C        + +A  +FDR
Sbjct: 272 SVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYC----KCKCLHYAKTVFDR 327

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           + + ++V +  M  GY ++     A+ +F+++  SG+ PD Y+    + ACA +   +LE
Sbjct: 328 MKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANI--SSLE 385

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           EG Q H  AI  GL   + V  +L+ LY +C D++ + R+F  ++    VS+ A+++AYA
Sbjct: 386 EGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYA 445

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE-YIKKYGLDKYV 260
           +  R  EA+ LF ++ +  LKP  VT+   +S+C+  G ++ G+   E  I +YG+    
Sbjct: 446 QFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSN 505

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHG 305
              + +ID+ ++ GR+++A+   + M  + D   W+ ++ A    G
Sbjct: 506 GHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKG 551



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 118/275 (42%), Gaps = 64/275 (23%)

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
           C+G  A    K +H   I+   +   ++   +++ YA       ARR+F+ I +P + S+
Sbjct: 13  CIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNLFSW 72

Query: 194 NAIITAYARSSRPNEALSLFRELQERN---------------------------LKP--- 223
           N ++ AY++S   +E    F +L +R+                           +K    
Sbjct: 73  NNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSS 132

Query: 224 --TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK--------- 272
             T VT+++ L   +  G + LGK IH  + K G + Y+ V + L+DM++K         
Sbjct: 133 NLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKK 192

Query: 273 ----------------------CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310
                                 CG ++DA+ +F  M  KD+ +WSAMI   A +G   ++
Sbjct: 193 VFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGME-KDSVSWSAMIKGLAQNGMEKEA 251

Query: 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
           I  F EM    +  D+  F  +L AC   G +++G
Sbjct: 252 IECFREMKIEGLKMDQYPFGSVLPACGGLGAINDG 286


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 183/487 (37%), Positives = 286/487 (58%), Gaps = 3/487 (0%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +E A  LF  + + D + + TM  G +++   + A+ +F  +   G+  D Y+F S+L A
Sbjct: 228 IEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTA 287

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C  + A   EEGKQ+H +  +     N++V + L+++Y++C  +  A  +F  ++   ++
Sbjct: 288 CGALAAS--EEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNII 345

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+ A+I  Y +++   EA+  F E+Q   +KP D T+ S +SSCA L SL+ G   H   
Sbjct: 346 SWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLA 405

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
              GL +Y+ V+ AL+ ++ KCG ++DA  +FD MS  D  +W+A++  YA  G+  ++I
Sbjct: 406 LVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETI 465

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +FE+M+   + PD +TF+G+L ACS  GLV++G +YF SM+  + IVP   HY CM+DL
Sbjct: 466 DLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDL 525

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
             R+GR  EA  FI ++P       W TLLSSC    N+ + K   E + E D  +   Y
Sbjct: 526 YSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASY 585

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           V+L ++ A  G+W +V +LR+ M+DR V K PGCS I+  N V  F + D  H +S+ + 
Sbjct: 586 VLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIY 645

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
           + L+ L  ++   GY PD S V H D+ D +K   + +HSEKLAI FGL+  P    IR+
Sbjct: 646 EKLEWLNSKMAEEGYKPDVSSVLH-DVADADKVHMISHHSEKLAIAFGLIFVPQEMPIRI 704

Query: 552 VKNLRVC 558
           VKNLRVC
Sbjct: 705 VKNLRVC 711



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 115/446 (25%), Positives = 211/446 (47%), Gaps = 52/446 (11%)

Query: 61  NFCTQNPTTSSMEHAHL------LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL 114
           N  T+N   S++ H+ L      LF  +PE D V +N +  G+S + +P R++ L+  LL
Sbjct: 78  NLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALL 137

Query: 115 NS-GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
               + P   +  +++   + +   AL  G  +HC  ++LG  +  +V + L+++YA+  
Sbjct: 138 REESVRPTRITLSAMIMVASALSDRAL--GHSVHCQVLRLGFGAYAFVGSPLVDMYAKMG 195

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPN-------------------------- 207
            +  ARR+F+ +    VV YN +IT   R                               
Sbjct: 196 LIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQ 255

Query: 208 -----EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
                EAL +FR ++   +     T  S L++C  L + + GK IH YI +   +  V V
Sbjct: 256 NGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFV 315

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
            +AL+DM++KC  +  A +VF  M+ ++  +W+AMIV Y  +    +++  F EM    +
Sbjct: 316 GSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGI 375

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            PD+ T   ++ +C++   ++EG   F+ +    G++  I     +V L G+ G +++A+
Sbjct: 376 KPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAH 434

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD-----DSHGGDYVILSNL 437
           R  DE+      + W  L+   + +   G AK+ I+ +FE          G  ++ + + 
Sbjct: 435 RLFDEMSFHDQ-VSWTALV---TGYAQFGKAKETID-LFEKMLVNGLKPDGVTFIGVLSA 489

Query: 438 CARAGRWED-VDYLRKLMKDRGVLKV 462
           C+RAG  E   DY   + KD  ++ +
Sbjct: 490 CSRAGLVEKGCDYFDSMQKDHDIVPI 515



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 110/274 (40%), Gaps = 64/274 (23%)

Query: 136 GAEALEEGKQLHCFAIKLGLNSN-LYVCTTLINLYAECSDVEAARRIFENISEPCV---- 190
           G   +     +HC  +K  L +   ++   L+  YA+   +  ARR+F+ + +P +    
Sbjct: 24  GRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRN 83

Query: 191 ---------------------------VSYNAIITAYARSSRPNEALSLFRE-LQERNLK 222
                                      VSYNA+IT ++ +  P  ++ L+R  L+E +++
Sbjct: 84  ALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVR 143

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
           PT +T+ + +   + L    LG  +H  + + G   Y  V + L+DM+AK G + DA  V
Sbjct: 144 PTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRV 203

Query: 283 FDNMSGK-------------------------------DTQAWSAMIVAYATHGQGHKSI 311
           F  M  K                               D+  W+ M+     +G   +++
Sbjct: 204 FQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEAL 263

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
            +F  M    V  D+ TF  +L AC      +EG
Sbjct: 264 DVFRRMRAEGVGIDQYTFGSILTACGALAASEEG 297



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 41/227 (18%)

Query: 26  SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S++  C +   L+   Q H + + + L   + V   L+   T      S+E AH LFD +
Sbjct: 384 SVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALV---TLYGKCGSIEDAHRLFDEM 440

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
              D V +  +  GY++       I LF ++L +GL PD  +F  +L AC+  G   +E+
Sbjct: 441 SFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAG--LVEK 498

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G                            C   ++ ++  + +  P    Y  +I  Y+R
Sbjct: 499 G----------------------------CDYFDSMQKDHDIV--PIDDHYTCMIDLYSR 528

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           S R  EA    +++      P      + LSSC L G++++GKW  E
Sbjct: 529 SGRFKEAEEFIKQMPH---SPDAFGWATLLSSCRLRGNMEIGKWAAE 572


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 189/551 (34%), Positives = 319/551 (57%), Gaps = 15/551 (2%)

Query: 16  KLCTNTPNALS---LLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTT 69
           +L   +P++ +   LL  C+    L+    +HA   +     D+ V   LI    +    
Sbjct: 111 QLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRL 170

Query: 70  SSMEHAHLLFDRIPEPD--IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPS 127
            S   A  +F+ +P P+  IV +  +   Y+++  P+ A+ +F  +    + PD  +  S
Sbjct: 171 GS---ARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVS 227

Query: 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE 187
           +L A  C+  + L++G+ +H   +K+GL     +  +L  +YA+C  V  A+ +F+ +  
Sbjct: 228 VLNAFTCL--QDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKS 285

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
           P ++ +NA+I+ YA++    EA+ +F E+  ++++P  +++ SA+S+CA +GSL+  + +
Sbjct: 286 PNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSM 345

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQG 307
           +EY+ +      V +++ALIDM AKCG ++ A  VFD    +D   WSAMIV Y  HG+ 
Sbjct: 346 YEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRA 405

Query: 308 HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367
            ++I ++  M +  V P+++TFLGLL AC+H+G+V EGW +F  M D + I P  +HY C
Sbjct: 406 REAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMAD-HKINPQQQHYAC 464

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
           ++DLLGRAG LD+AY  I  +P++    +W  LLS+C  H ++ L +   +++F +D S+
Sbjct: 465 VIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSN 524

Query: 428 GGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYS 487
            G YV LSNL A A  W+ V  +R  MK++G+ K  GCS +EV   +  F  GD  H   
Sbjct: 525 TGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRY 584

Query: 488 TDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGT 547
            ++++ ++ +   LK  G+V +     H D+ DEE E  L  HSE++AI +GL++TP GT
Sbjct: 585 EEIERQVEWIESRLKEGGFVANKDASLH-DLNDEEAEETLCSHSERIAIAYGLISTPQGT 643

Query: 548 TIRVVKNLRVC 558
            +R+ KNLR C
Sbjct: 644 PLRITKNLRAC 654



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 134/441 (30%), Positives = 227/441 (51%), Gaps = 18/441 (4%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP 85
           SL+   T    LKQIHA  +   LQ    ++TKLI+    + +   +  A  +FD +P P
Sbjct: 26  SLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIH---ASSSFGDITFARQVFDDLPRP 82

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
            I  +N + RGYSR+     A+ ++  +  + + PD ++FP LLKAC+  G   L+ G+ 
Sbjct: 83  QIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACS--GLSHLQMGRF 140

Query: 146 LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP--CVVSYNAIITAYARS 203
           +H    +LG +++++V   LI LYA+C  + +AR +FE +  P   +VS+ AI++AYA++
Sbjct: 141 VHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQN 200

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
             P EAL +F  +++ ++KP  V ++S L++   L  L  G+ IH  + K GL+    + 
Sbjct: 201 GEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLL 260

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
            +L  M+AKCG++  A  +FD M   +   W+AMI  YA +G   ++I MF EM+   V 
Sbjct: 261 ISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVR 320

Query: 324 PDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
           PD I+    + AC+  G +++  + Y Y  R  Y     I     ++D+  + G ++ A 
Sbjct: 321 PDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFIS--SALIDMFAKCGSVEGA- 377

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE--RIFELDDSHGGDYVILSNL--C 438
           R + +  +    ++W  ++     H   G A++ I   R  E    H  D   L  L  C
Sbjct: 378 RLVFDRTLDRDVVVWSAMIVGYGLH---GRAREAISLYRAMERGGVHPNDVTFLGLLMAC 434

Query: 439 ARAGRWEDVDYLRKLMKDRGV 459
             +G   +  +   LM D  +
Sbjct: 435 NHSGMVREGWWFFNLMADHKI 455



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 158/311 (50%), Gaps = 13/311 (4%)

Query: 115 NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174
           NSG+  D + + SL+ +     A    + KQ+H   + LGL  + ++ T LI+  +   D
Sbjct: 15  NSGIHSDSF-YASLIDS-----ATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGD 68

Query: 175 VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSS 234
           +  AR++F+++  P +  +NAII  Y+R++   +AL ++  +Q   + P   T    L +
Sbjct: 69  ITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKA 128

Query: 235 CALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN--MSGKDTQ 292
           C+ L  L +G+++H  + + G D  V V   LI ++AKC RL  A +VF+   +  +   
Sbjct: 129 CSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIV 188

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
           +W+A++ AYA +G+  +++ +F  M K  V PD +  + +L A +    + +G +   S+
Sbjct: 189 SWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASV 248

Query: 353 RDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGL 412
             K G+         +  +  + G++  A    D++      ILW  ++S  + +   G 
Sbjct: 249 V-KMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAMISGYAKN---GY 303

Query: 413 AKQVIERIFEL 423
           A++ I+   E+
Sbjct: 304 AREAIDMFHEM 314


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 196/536 (36%), Positives = 303/536 (56%), Gaps = 14/536 (2%)

Query: 27  LLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           ++  C+  R  +   +IH   +K   Q+ + +   LI   T        E +  +FD +P
Sbjct: 16  IIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLI---TMYGKCDKYELSRQVFDEMP 72

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
           + + V ++ +     +         LF ++L+ G  P   S  ++L A ACV +   EE 
Sbjct: 73  DKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRP---SRGAILNAMACVRSH--EEA 127

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
             ++   ++ GL+ +  V +    ++A C  VE AR++F+ I    +V++   I AY ++
Sbjct: 128 DDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKA 187

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK-YGLDKYVKV 262
             P EAL L +++  + + P  +T+L  + +C+ L S  L   +H  I   +  ++ + V
Sbjct: 188 DMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAV 247

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
            TALID++ KCG L  A  VFD M  ++   WSAMI  Y  HG G +++ +F++M KA V
Sbjct: 248 ETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQM-KASV 306

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            PD ITF+ +L ACSH+GLV EGW  F SM   +G+ P  +HY CMVD+LGRAG+LDEA 
Sbjct: 307 KPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEAC 366

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
            FI+ +P++    +W  LL +C  H N+ LA+ V   +F+LD  + G YVIL N+    G
Sbjct: 367 DFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVILYNIYTLTG 426

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           + ++ D +R LMK+RGV K+ G S IE+ N +  F +GD  H  +  +   L+ L+  ++
Sbjct: 427 KRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLIYSELERLMDRIR 486

Query: 503 MVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             GY PD + V H D+++E KE  L  HSEKLAI FGLLN  PG+ IR+ KNLRVC
Sbjct: 487 QEGYTPDINFVLH-DVDEETKESMLYLHSEKLAIVFGLLNLGPGSVIRIRKNLRVC 541



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 178/365 (48%), Gaps = 33/365 (9%)

Query: 113 LLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172
           +L  G+ PD+++FP ++KAC+C+     E G ++H   +K G  S +++  +LI +Y +C
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCL--RHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKC 58

Query: 173 SDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232
              E +R++F+ + +   VS++AII A  +  R  E  SLFR++     +P+   +L+A+
Sbjct: 59  DKYELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAM 118

Query: 233 SSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ 292
              A + S +    ++  + + GLD    V +A   M A+CGR++ A  +FD +  KD  
Sbjct: 119 ---ACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLV 175

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT----------GLV 342
            W+  I AY       +++ + ++MM   + PD IT LG++ ACS            G++
Sbjct: 176 TWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGII 235

Query: 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
             G  +FY+          +     ++DL  + G L  A +  D +  ++  I W  ++S
Sbjct: 236 TTG--FFYNQL--------LAVETALIDLYVKCGSLTYARKVFDGMQERNI-ITWSAMIS 284

Query: 403 SCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL---CARAGR-WEDVDYLRKLMKDRG 458
               H   G  ++ +    ++  S   D++   ++   C+ +G   E  +    + +D G
Sbjct: 285 GYGMH---GWGREALNLFDQMKASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFG 341

Query: 459 VLKVP 463
           V   P
Sbjct: 342 VTPRP 346


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 187/521 (35%), Positives = 295/521 (56%), Gaps = 5/521 (0%)

Query: 38   KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
            K +HA+ I     + L V   L+   T       M  A  +   +P+PD V +N +  G+
Sbjct: 519  KIVHALIIVAGFHDFLIVGNALV---TMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGH 575

Query: 98   SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            + ++ P  A+  +  +   G+  +  +  S+L AC+    + L+ G  +H   +  G  S
Sbjct: 576  AENEEPNEAVKAYKLIREKGIPANYITMVSVLGACS-APDDLLKHGMPIHAHIVLTGFES 634

Query: 158  NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            + YV  +LI +YA+C D+ ++  IF+ +     +++NA++ A A      EAL +F E++
Sbjct: 635  DDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMR 694

Query: 218  ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
               +     +    L++ A L  L+ G+ +H  + K G +  + V  A +DM+ KCG + 
Sbjct: 695  NVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMH 754

Query: 278  DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            D + +      +   +W+ +I A+A HG   K+   F EM+K    PD +TF+ LL AC+
Sbjct: 755  DVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACN 814

Query: 338  HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
            H GLVDEG  Y+ SM  ++G+ PGI+H  C++DLLGR+GRL  A  FI E+P+    + W
Sbjct: 815  HGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAW 874

Query: 398  RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
            R+LL++C  H NL LA++  E + ELD S    YV+ SN+CA +G+WEDV+ LRK M   
Sbjct: 875  RSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSN 934

Query: 458  GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
             + K P CS +++ + V  F  G+  H  ++ +   L EL+K  K  GYVPDTS   H D
Sbjct: 935  NIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFALH-D 993

Query: 518  MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            M++E+KE  L  HSE+LA+ FGL+NTP  +T+R+ KNLRVC
Sbjct: 994  MDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVC 1034



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 154/301 (51%), Gaps = 5/301 (1%)

Query: 18  CTNTPN-ALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           C N  N  L      TS    K +HA  I   +   +     LIN  ++     ++EHA 
Sbjct: 93  CLNAVNFPLKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSK---FGNIEHAR 149

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +FD +   +   ++TM  GY R      A+ LF ++   G+ P+ +   SL+ AC+  G
Sbjct: 150 YVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSG 209

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
             A +EG Q+H F +K G+  ++YV T L++ Y     V  A+++FE + +  VVS+ ++
Sbjct: 210 YMA-DEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSL 268

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           +  Y+ S  P E L++++ +++  +     T  +  SSC LL    LG  +  +I +YG 
Sbjct: 269 MVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGF 328

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
           +  V V  +LI M +    +++A  VFD+M+  D  +W+AMI AYA HG   +S+  F  
Sbjct: 329 EDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHW 388

Query: 317 M 317
           M
Sbjct: 389 M 389



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 186/367 (50%), Gaps = 15/367 (4%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           Q+H   +KT +  D+ V T L++F     +   + +A  LF+ +P+ ++V + ++  GYS
Sbjct: 217 QVHGFVVKTGILGDVYVGTALVHF---YGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYS 273

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
            S  P   + ++  +   G+  +  +F ++  +C  +  + L  G Q+    I+ G   +
Sbjct: 274 DSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVL--GYQVLGHIIQYGFEDS 331

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
           + V  +LI++++  S VE A  +F++++E  ++S+NA+I+AYA      E+L  F  ++ 
Sbjct: 332 VSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRH 391

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
            + +    T+ S LS C+ + +L  G+ IH  + K GLD  V +   L+ ++++ GR +D
Sbjct: 392 LHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSED 451

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A  VF  M+ +D  +W++M+  Y   G+    + +  E+++     + +TF   L ACS+
Sbjct: 452 AELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSN 511

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHY----GCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
              + E       +     IV G   +      +V + G+ G + EA + +  +P +   
Sbjct: 512 PECLIES-----KIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMP-QPDR 565

Query: 395 ILWRTLL 401
           + W  L+
Sbjct: 566 VTWNALI 572



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 179/384 (46%), Gaps = 36/384 (9%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           Q+    I+   ++ ++V   LI+  +   + SS+E A  +FD + E DI+ +N M   Y+
Sbjct: 318 QVLGHIIQYGFEDSVSVANSLISMFS---SFSSVEEACYVFDHMNECDIISWNAMISAYA 374

Query: 99  RS---KTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155
                +  +R       L N     +  S         C   + L+ G+ +H   +KLGL
Sbjct: 375 HHGLCRESLRCFHWMRHLHN-----ETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGL 429

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
           +SN+ +C TL+ LY+E    E A  +F+ ++E  ++S+N+++  Y +  +  + L +  E
Sbjct: 430 DSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAE 489

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
           L +       VT  SAL++C+    L   K +H  I   G   ++ V  AL+ M+ K G 
Sbjct: 490 LLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGM 549

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           + +A  V   M   D   W+A+I  +A + + ++++  ++ + +  +  + IT + +L A
Sbjct: 550 MMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGA 609

Query: 336 CS------------HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
           CS            H  +V  G+       D Y     +K+   ++ +  + G L+ +  
Sbjct: 610 CSAPDDLLKHGMPIHAHIVLTGFE-----SDDY-----VKN--SLITMYAKCGDLNSSNY 657

Query: 384 FIDELPIKSTPILWRTLLSSCSSH 407
             D L  KS PI W  ++++ + H
Sbjct: 658 IFDGLGNKS-PITWNAMVAANAHH 680


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 196/525 (37%), Positives = 319/525 (60%), Gaps = 16/525 (3%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLIN----FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMA 94
           QIHA  +K  L +DL V   L++    FC       SM++   +FD++P+ D+V + T+ 
Sbjct: 404 QIHAYAMKNGLDSDLQVGNSLVDMYAKFC-------SMKYMDCIFDKMPDKDVVSWTTII 456

Query: 95  RGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
            G++++ +  RA+ LF E+   G+  D     S+L AC+  G + +   K++H + I+ G
Sbjct: 457 AGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACS--GLKLISSVKEIHSYIIRKG 514

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           L S+L +   ++++Y EC +V+ A R+FE I    VVS+ ++I+ Y  +   NEAL LF 
Sbjct: 515 L-SDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFH 573

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
            ++E  ++P  ++++S LS+ A L +L  GK IH ++ + G      + + L+DM+A+CG
Sbjct: 574 LMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCG 633

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
            L+ + +VF+ +  KD   W++MI AY  HG G  +I +F  M    ++PD I F+ +LY
Sbjct: 634 TLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLY 693

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           ACSH+GL++EG  +  SM+ +Y + P  +HY C+VDLLGRA  L+EAY+F+  + ++ T 
Sbjct: 694 ACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTA 753

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454
            +W  LL +C  H+N  L +   +++ E+D  + G+YV++SN+ +   RW+DV+ +R  M
Sbjct: 754 EVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRM 813

Query: 455 KDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL-KMVGYVPDTSLV 513
           K  G+ K PGCS IEV N V  F + D  H  S ++   L ++ ++L K  GYV  T  V
Sbjct: 814 KASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFV 873

Query: 514 HHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            H + ++EEK   L  HSE+LAI +G+L TP G ++R+ KNLRVC
Sbjct: 874 LH-NAKEEEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVC 917



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 212/401 (52%), Gaps = 14/401 (3%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTH-LQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           S+L  C S + L   +Q+HA  I ++ L N + + T+L+    +      +  A  LFD 
Sbjct: 83  SVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGK---CGCLVDAEKLFDG 139

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +P   I  +N M   Y  +  P+ ++ L+ E+  SG+  D  +FP +LKAC  +  +   
Sbjct: 140 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLL--KDRR 197

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP-CVVSYNAIITAY 200
            G ++H  AIK G  S ++V  +++ +Y +C+D+  AR++F+ + E   VVS+N++I+AY
Sbjct: 198 YGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAY 257

Query: 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
           + + +  EAL LF E+Q+ +L P   T ++AL +C     +  G +IH  + K      V
Sbjct: 258 SSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINV 317

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            V  ALI M+A+ G++ +A ++F NM   DT +W++M+  +  +G  H+++  + EM  A
Sbjct: 318 FVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDA 377

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
              PD +  + ++ A + +G    G   + Y+M++  G+   ++    +VD+  +   + 
Sbjct: 378 GQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKN--GLDSDLQVGNSLVDMYAKFCSMK 435

Query: 380 EAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
                 D++P K   + W T+++  + + +   A ++   +
Sbjct: 436 YMDCIFDKMPDKDV-VSWTTIIAGHAQNGSHSRALELFREV 475



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 200/391 (51%), Gaps = 13/391 (3%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP-DIVLFNTMARGY 97
           ++H + IK    + + V   ++   T+    + +  A  LFDR+PE  D+V +N+M   Y
Sbjct: 201 EVHGLAIKEGYVSIVFVANSIVGMYTK---CNDLNGARQLFDRMPEKEDVVSWNSMISAY 257

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           S +   I A+ LF E+  + L P+ Y+F + L+AC    +  +++G  +H   +K     
Sbjct: 258 SSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACE--DSSFIKQGMFIHATVLKSSYYI 315

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           N++V   LI +YA    +  A  IF N+ +   +S+N++++ + ++   +EAL  + E++
Sbjct: 316 NVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMR 375

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           +   KP  V ++S +++ A  G+   G  IH Y  K GLD  ++V  +L+DM+AK   + 
Sbjct: 376 DAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMK 435

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
               +FD M  KD  +W+ +I  +A +G   +++ +F E+    +  D +    +L ACS
Sbjct: 436 YMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACS 495

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
              L+       +S   + G+   +   G +VD+ G  G +D A R  + +  K   + W
Sbjct: 496 GLKLISS-VKEIHSYIIRKGLSDLVLQNG-IVDVYGECGNVDYAARMFELIEFKDV-VSW 552

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428
            +++ SC  HN  GLA + +E +F L    G
Sbjct: 553 TSMI-SCYVHN--GLANEALE-LFHLMKETG 579



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 163/325 (50%), Gaps = 10/325 (3%)

Query: 122 DYSFPSLLKACACVGAEALEEGKQLHCFAIKL-GLNSNLYVCTTLINLYAECSDVEAARR 180
           D ++ S+L+ C     +AL EG+Q+H   I    L +++++ T L+ +Y +C  +  A +
Sbjct: 78  DEAYSSVLELCG--SKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEK 135

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
           +F+ +    + ++NA+I AY  +  P  +L L+RE++   +     T    L +C LL  
Sbjct: 136 LFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKD 195

Query: 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIV 299
              G  +H    K G    V V  +++ M+ KC  L+ A  +FD M  K D  +W++MI 
Sbjct: 196 RRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMIS 255

Query: 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359
           AY+++GQ  +++ +F EM KA ++P+  TF+  L AC  +  + +G  + ++   K    
Sbjct: 256 AYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGM-FIHATVLKSSYY 314

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIER 419
             +     ++ +  R G++ EA      +    T I W ++LS    +   GL  + ++ 
Sbjct: 315 INVFVANALIAMYARFGKMGEAANIFYNMDDWDT-ISWNSMLSGFVQN---GLYHEALQF 370

Query: 420 IFELDDS-HGGDYVILSNLCARAGR 443
             E+ D+    D V + ++ A + R
Sbjct: 371 YHEMRDAGQKPDLVAVISIIAASAR 395


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 202/537 (37%), Positives = 300/537 (55%), Gaps = 11/537 (2%)

Query: 27  LLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
            L  CT  R +   + I    + T ++ +  V T L++   +    +    A  +F R+ 
Sbjct: 82  FLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTD---AASVFLRMS 138

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
             D+V ++ M   Y+R+  P  A+ LF ++   G+ P+  +  S L ACA +G   L  G
Sbjct: 139 HRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGD--LRSG 196

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
             +H      G+ S + V T L+NLY +C  +EAA   F  I E  VV+++AI  AYAR+
Sbjct: 197 ALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYARN 256

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG--LDKYVK 261
            R  +A+ +   +    L P   T +S L +CA + +L  G+ IHE I   G  L+  V 
Sbjct: 257 DRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVY 316

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V TAL++M++KCG L  A ++FD ++  D   W+++I   A HGQ  K++ +FE M    
Sbjct: 317 VLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEG 376

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           + P  ITF  +L+ACSH G++D+G  +F S    +GI P  +H+GCMVDLLGRAG + ++
Sbjct: 377 LQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDS 436

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
              +  +P +  P+ W   L +C ++ N+  A    E +F+LD      YV+LSN+ A+A
Sbjct: 437 EDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQLDPRKRAPYVLLSNMYAKA 496

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           GRW DV  +R+ M+    +K  G S IEV + V EF SGD  H    ++   L  L K +
Sbjct: 497 GRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTKLM 556

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K  GYVPDT +V H D++ E KE  + YHSEKLA+ F LL TP G+ IRVVKNLRVC
Sbjct: 557 KAAGYVPDTEMVLH-DVKQEVKETMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRVC 612



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 138/269 (51%), Gaps = 2/269 (0%)

Query: 152 KLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALS 211
           +LG   N ++C  LI+LY +C   + A  +F  I    V S+  ++ A+A +   +    
Sbjct: 3   ELGWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWL 62

Query: 212 LFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271
            FR +  + + P +V +   LS+C     + +G+ I   I   G+++   V TAL+ ++ 
Sbjct: 63  FFRGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYG 122

Query: 272 KCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLG 331
           K G   DA SVF  MS +D  AWSAM+ AYA +G   +++ +F +M    V+P+++T + 
Sbjct: 123 KLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVS 182

Query: 332 LLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIK 391
            L AC+  G +  G    +   +  GI  G+     +V+L G+ GR++ A     ++ ++
Sbjct: 183 GLDACASLGDLRSG-ALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQI-VE 240

Query: 392 STPILWRTLLSSCSSHNNLGLAKQVIERI 420
              + W  + ++ + ++    A +V+ R+
Sbjct: 241 KNVVAWSAISAAYARNDRNRDAIRVLHRM 269


>gi|356567046|ref|XP_003551734.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g36730-like [Glycine max]
          Length = 505

 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 186/494 (37%), Positives = 291/494 (58%), Gaps = 11/494 (2%)

Query: 19  TNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLL 78
           +     LSLL  C S   L+QI A    + L  D  VL++L+ FC+ +P+  ++ HA   
Sbjct: 14  SKKQQCLSLLNSCRSMDQLRQIQAQVHVSGLYQDTRVLSELVYFCSLSPS-KNLRHARSF 72

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
                 P  + +N + RGY+ S +P+ A ++F ++   G +P+  +FP LLK+CA   A 
Sbjct: 73  VHHAATPSPISWNILIRGYAASDSPLEAFWVFRKMRERGAMPNKLTFPFLLKSCAV--AS 130

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
           AL EGKQ+H  A+K GL+S++YV   LIN Y  C  +  AR++F  + E  VVS+N+++T
Sbjct: 131 ALFEGKQVHADAVKCGLDSDVYVGNNLINFYGCCKKIVDARKVFGEMPERTVVSWNSVMT 190

Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
           A   S    + +  F  +     +P + +M+  LS+CA LG L LG+W+H  +   G+  
Sbjct: 191 ACVESLWLGDGIGYFFRMWGCGFEPDETSMVLLLSACAELGYLSLGRWVHSQLVLRGMVL 250

Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
            V++ TAL+DM+ K G L  A  VF+ M  ++   WSAMI+  A HG G +++ +F  M 
Sbjct: 251 SVQLGTALVDMYGKSGALGYARDVFERMENRNVWTWSAMILGLAQHGFGEEALELFAIMN 310

Query: 319 KA-----QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
                   + P+ +T+LG+L ACSH G+VDEG+ YF+ M   +GI P + HYG MVD+LG
Sbjct: 311 NNNNDNRDIRPNYVTYLGVLCACSHAGMVDEGYQYFHDMECVHGIKPLMTHYGAMVDVLG 370

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCS---SHNNLGLAKQVIERIFELDDSHGGD 430
           RAGRL+EAY FI  +PI+  P++WRTLLS+C+    H++ G+ ++V +++   +   GG+
Sbjct: 371 RAGRLEEAYEFIQSMPIEPDPVVWRTLLSACTVHDVHDHTGIGERVSKKLLLKEPRRGGN 430

Query: 431 YVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDL 490
            VI++N+ A  G WE+   +R++M+D G+ KV G S +++   +  FF+G         +
Sbjct: 431 LVIVANMYAEVGMWEEAANVRRVMRDGGMKKVAGESCVDLGGSMHRFFAGYDPCPDLVPV 490

Query: 491 QKALDELVKELKMV 504
              LD L   LKMV
Sbjct: 491 YHLLDGLNLHLKMV 504


>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
 gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
          Length = 508

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 189/493 (38%), Positives = 295/493 (59%), Gaps = 43/493 (8%)

Query: 49  LQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE-PDIVLFNTMARGYSRSKT-PIRA 106
           L  D  +L++ I+ C+   +     +A+ LF  I   PDI L+N + +  S S T P  +
Sbjct: 6   LDTDNLLLSRFIHACS---SLGFYSYAYSLFTSITHAPDIYLYNNIIKALSSSPTHPKAS 62

Query: 107 IFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTT-- 164
           IFL+  +  +GL PD YSFP  LKA       +++ G+QLH  +I+ GL+S+L+V T   
Sbjct: 63  IFLYNNIQLAGLRPDSYSFPFALKAVTRF--SSIQTGRQLHSQSIRFGLHSDLHVLTAFV 120

Query: 165 ---------------------------------LINLYAECSDVEAARRIFENISEPCVV 191
                                            ++N YA+  D+  AR +FE + +  V+
Sbjct: 121 QMYSSFGSGCICDARKMFDGMSMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVI 180

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+ A+IT YA+++RP++A++LFR +Q  N++P ++ ML AL++CA LG+L+LG+WI  YI
Sbjct: 181 SWTALITGYAQANRPHDAIALFRRMQLENVEPDEIAMLVALTACARLGALELGEWIRHYI 240

Query: 252 KKYGL-DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310
            + GL    + +N ALIDM+AK G +  A+ VF+NM+ K    W+ MI   A HG G ++
Sbjct: 241 DRLGLLTTNIPLNNALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEA 300

Query: 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370
           + MF  M +A+V P++ITF+ +L ACSH GLV  G  YF  M  +YGI P I+HYGCM+D
Sbjct: 301 LEMFSRMERARVKPNDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMID 360

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430
           LLGRAG L EA   + ++P +   ++W +LL++C++H +  L +  ++ + EL+  + G+
Sbjct: 361 LLGRAGHLKEAQTLLAQMPFEPNAVIWGSLLAACNTHGDPELGELALQHLLELEPDNSGN 420

Query: 431 YVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDL 490
           Y +LSN+ A  GRW +   +RK+M D GV K+PG S IEVNN V EF +G+  HS    +
Sbjct: 421 YALLSNIYASRGRWNESRVVRKVMWDAGVKKMPGGSLIEVNNRVHEFIAGEISHSQFDRI 480

Query: 491 QKALDELVKELKM 503
           Q+ L ++ ++L +
Sbjct: 481 QEVLSKINRQLGL 493


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 187/521 (35%), Positives = 295/521 (56%), Gaps = 5/521 (0%)

Query: 38   KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
            K +HA+ I     + L V   L+   T       M  A  +   +P+PD V +N +  G+
Sbjct: 1169 KIVHALIIVAGFHDFLIVGNALV---TMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGH 1225

Query: 98   SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            + ++ P  A+  +  +   G+  +  +  S+L AC+    + L+ G  +H   +  G  S
Sbjct: 1226 AENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPD-DLLKHGMPIHAHIVLTGFES 1284

Query: 158  NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            + YV  +LI +YA+C D+ ++  IF+ +     +++NA++ A A      EAL +F E++
Sbjct: 1285 DDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMR 1344

Query: 218  ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
               +     +    L++ A L  L+ G+ +H  + K G +  + V  A +DM+ KCG + 
Sbjct: 1345 NVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMH 1404

Query: 278  DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            D + +      +   +W+ +I A+A HG   K+   F EM+K    PD +TF+ LL AC+
Sbjct: 1405 DVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACN 1464

Query: 338  HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
            H GLVDEG  Y+ SM  ++G+ PGI+H  C++DLLGR+GRL  A  FI E+P+    + W
Sbjct: 1465 HGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAW 1524

Query: 398  RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
            R+LL++C  H NL LA++  E + ELD S    YV+ SN+CA +G+WEDV+ LRK M   
Sbjct: 1525 RSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSN 1584

Query: 458  GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
             + K P CS +++ + V  F  G+  H  ++ +   L EL+K  K  GYVPDTS   H D
Sbjct: 1585 NIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFALH-D 1643

Query: 518  MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            M++E+KE  L  HSE+LA+ FGL+NTP  +T+R+ KNLRVC
Sbjct: 1644 MDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVC 1684



 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 158/448 (35%), Positives = 242/448 (54%), Gaps = 9/448 (2%)

Query: 26  SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S L  CTS R L    Q+     K     +L V + L++F ++      ME A  LF  +
Sbjct: 136 SALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSK---CGKMEDASYLFGTM 192

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
            E D+V +N M  GY+       +  +F  +L  GL+PD Y+  S+L+A A  G   L  
Sbjct: 193 MERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGG--LII 250

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
             Q+H    +LG  S   V   LIN YA+   + +A+ + + + +  + S  A+IT YA 
Sbjct: 251 ANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAH 310

Query: 203 SSRPN-EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
               + +AL LF+E+ + N+   DV + S L+ CA L S  LG  IH +  KY     V 
Sbjct: 311 EGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDVA 370

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           +  ALIDM+AK G ++DA   FD M  K+  +W+++I  YA HG GH ++ ++++M    
Sbjct: 371 MGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKG 430

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
             P+++TFL LL+ACSHTGL  EG   F +M +KY I P  +HY CMVDL  R G L+EA
Sbjct: 431 FKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEA 490

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
           Y  + ++ IK    LW  +L + S +  + L K+    +F +   +  +YV+L+++ + A
Sbjct: 491 YNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSAA 550

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIE 469
           G W+D   +RKLM++R   K  G S  +
Sbjct: 551 GLWDDAWKIRKLMEERSTKKNAGYSFFQ 578



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 154/301 (51%), Gaps = 5/301 (1%)

Query: 18   CTNTPN-ALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
            C N  N  L      TS    K +HA  I   +   +     LIN  ++     ++EHA 
Sbjct: 743  CLNAVNFPLKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSK---FGNIEHAR 799

Query: 77   LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
             +FD +   +   ++TM  GY R      A+ LF ++   G+ P+ +   SL+ AC+  G
Sbjct: 800  YVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSG 859

Query: 137  AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
              A +EG Q+H F +K G+  ++YV T L++ Y     V  A+++FE + +  VVS+ ++
Sbjct: 860  YMA-DEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSL 918

Query: 197  ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
            +  Y+ S  P E L++++ +++  +     T  +  SSC LL    LG  +  +I +YG 
Sbjct: 919  MVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGF 978

Query: 257  DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
            +  V V  +LI M +    +++A  VFD+M+  D  +W+AMI AYA HG   +S+  F  
Sbjct: 979  EDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHW 1038

Query: 317  M 317
            M
Sbjct: 1039 M 1039



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 186/387 (48%), Gaps = 11/387 (2%)

Query: 25  LSLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           L +L  C   +  KQ   IH   I     +DL++ TKLI F  +      +  A  +FD 
Sbjct: 34  LKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVK---VGDVIAARNVFDG 90

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +PE  +V +  M  GYS++    +A  LF ++ + G+  + +++ S L+AC  +    L+
Sbjct: 91  MPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSL--RCLD 148

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G Q+     K     NL+V + L++ +++C  +E A  +F  + E  VVS+NA+I  YA
Sbjct: 149 MGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYA 208

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
                +++  +FR +    L P   T+ S L + A  G L +   IH  I + G   Y  
Sbjct: 209 VQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDI 268

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG-QGHKSILMFEEMMKA 320
           V   LI+ +AK G L  A  +   M  KD  + +A+I  YA  G     ++ +F+EM + 
Sbjct: 269 VTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQM 328

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
            +  D++    +L  C++      G    ++   KY     +     ++D+  ++G +++
Sbjct: 329 NIGMDDVILCSMLNICANLASFALG-TQIHAFALKYQPSYDVAMGNALIDMYAKSGEIED 387

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSH 407
           A R  DE+  K+  I W +L+S  + H
Sbjct: 388 AKRAFDEMEEKNV-ISWTSLISGYAKH 413



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 186/369 (50%), Gaps = 15/369 (4%)

Query: 39   QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
            Q+H   +KT +  D+ V T L++F     +   + +A  LF+ +P+ ++V + ++  GYS
Sbjct: 867  QVHGFVVKTGILGDVYVGTALVHF---YGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYS 923

Query: 99   RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
             S  P   + ++  +   G+  +  +F ++  +C  +  + L  G Q+    I+ G   +
Sbjct: 924  DSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVL--GYQVLGHIIQYGFEDS 981

Query: 159  LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
            + V  +LI++++  S VE A  +F++++E  ++S+NA+I+AYA      E+L  F  ++ 
Sbjct: 982  VSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRH 1041

Query: 219  RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
             + +    T+ S LS C+ + +L  G+ IH  + K GLD  V +   L+ ++++ GR +D
Sbjct: 1042 LHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSED 1101

Query: 279  AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
            A  VF  M+ +D  +W++M+  Y   G+    + +  E+++     + +TF   L ACS+
Sbjct: 1102 AELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSN 1161

Query: 339  TGLVDEGWNYFYSMRDKYGIVPGIKHY----GCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
               + E       +     IV G   +      +V + G+ G + EA + +  +P +   
Sbjct: 1162 PECLIES-----KIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMP-QPDR 1215

Query: 395  ILWRTLLSS 403
            + W  L+  
Sbjct: 1216 VTWNALIGG 1224



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 179/384 (46%), Gaps = 36/384 (9%)

Query: 39   QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
            Q+    I+   ++ ++V   LI+  +   + SS+E A  +FD + E DI+ +N M   Y+
Sbjct: 968  QVLGHIIQYGFEDSVSVANSLISMFS---SFSSVEEACYVFDHMNECDIISWNAMISAYA 1024

Query: 99   RS---KTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155
                 +  +R       L N     +  S         C   + L+ G+ +H   +KLGL
Sbjct: 1025 HHGLCRESLRCFHWMRHLHN-----ETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGL 1079

Query: 156  NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
            +SN+ +C TL+ LY+E    E A  +F+ ++E  ++S+N+++  Y +  +  + L +  E
Sbjct: 1080 DSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAE 1139

Query: 216  LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
            L +       VT  SAL++C+    L   K +H  I   G   ++ V  AL+ M+ K G 
Sbjct: 1140 LLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGM 1199

Query: 276  LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
            + +A  V   M   D   W+A+I  +A + + ++++  ++ + +  +  + IT + +L A
Sbjct: 1200 MMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGA 1259

Query: 336  CS------------HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
            CS            H  +V  G+       D Y     +K+   ++ +  + G L+ +  
Sbjct: 1260 CSAPDDLLKHGMPIHAHIVLTGFE-----SDDY-----VKN--SLITMYAKCGDLNSSNY 1307

Query: 384  FIDELPIKSTPILWRTLLSSCSSH 407
              D L  KS PI W  ++++ + H
Sbjct: 1308 IFDGLGNKS-PITWNAMVAANAHH 1330


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  355 bits (910), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 197/525 (37%), Positives = 319/525 (60%), Gaps = 16/525 (3%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLIN----FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMA 94
           QIHA  +K  L +DL V   L++    FC       SM++   +FD++P+ D+V + T+ 
Sbjct: 440 QIHAYAMKNGLDSDLQVGNSLVDMYAKFC-------SMKYMDCIFDKMPDKDVVSWTTII 492

Query: 95  RGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
            G++++ +  RA+ LF E+   G+  D     S+L AC+  G + +   K++H + I+ G
Sbjct: 493 AGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACS--GLKLISSVKEIHSYIIRKG 550

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           L S+L +   ++++Y EC +V+ A R+FE I    VVS+ ++I+ Y  +   NEAL LF 
Sbjct: 551 L-SDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFH 609

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
            ++E  ++P  ++++S LS+ A L +L  GK IH ++ + G      + + L+DM+A+CG
Sbjct: 610 LMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCG 669

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
            L+ + +VF+ +  KD   W++MI AY  HG G  +I +F  M    ++PD I F+ +LY
Sbjct: 670 TLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLY 729

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           ACSH+GL++EG  +  SM+ +Y + P  +HY C+VDLLGRA  L+EAY+F+  + ++ T 
Sbjct: 730 ACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTA 789

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454
            +W  LL +C  H+N  L +   +++ E+D  + G+YV++SN+ A   RW+DV+ +R  M
Sbjct: 790 EVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRM 849

Query: 455 KDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL-KMVGYVPDTSLV 513
           K  G+ K PGCS IEV N V  F + D  H  S ++   L ++ ++L K  GYV  T  V
Sbjct: 850 KASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFV 909

Query: 514 HHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            H + ++EEK   L  HSE+LAI +G+L TP G ++R+ KNLRVC
Sbjct: 910 LH-NAKEEEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVC 953



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 204/383 (53%), Gaps = 14/383 (3%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTH-LQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           S+L  C S + L   +Q+HA  I ++ L N + + T+L+    +      +  A  LFD 
Sbjct: 119 SVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGK---CGCLVDAEKLFDG 175

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +P   I  +N M   Y  +  P+ ++ L+ E+  SG+  D  +FP +LKAC  +      
Sbjct: 176 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRC- 234

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP-CVVSYNAIITAY 200
            G ++H  AIK G  S ++V  +++ +Y +C+D+  AR++F+ + E   VVS+N++I+AY
Sbjct: 235 -GAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAY 293

Query: 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
           + + +  EAL LF E+Q+ +L P   T ++AL +C     +  G +IH  + K      V
Sbjct: 294 SSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINV 353

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            V  ALI M+A+ G++ +A ++F NM   DT +W++M+  +  +G  H+++  + EM  A
Sbjct: 354 FVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDA 413

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
              PD +  + ++ A + +G    G   + Y+M++  G+   ++    +VD+  +   + 
Sbjct: 414 GQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKN--GLDSDLQVGNSLVDMYAKFCSMK 471

Query: 380 EAYRFIDELPIKSTPILWRTLLS 402
                 D++P K   + W T+++
Sbjct: 472 YMDCIFDKMPDKDV-VSWTTIIA 493



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 200/391 (51%), Gaps = 13/391 (3%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP-DIVLFNTMARGY 97
           ++H + IK    + + V   ++   T+    + +  A  LFDR+PE  D+V +N+M   Y
Sbjct: 237 EVHGLAIKEGYVSIVFVANSIVGMYTK---CNDLNGARQLFDRMPEKEDVVSWNSMISAY 293

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           S +   I A+ LF E+  + L P+ Y+F + L+AC    +  +++G  +H   +K     
Sbjct: 294 SSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACE--DSSFIKQGMFIHATVLKSSYYI 351

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           N++V   LI +YA    +  A  IF N+ +   +S+N++++ + ++   +EAL  + E++
Sbjct: 352 NVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMR 411

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           +   KP  V ++S +++ A  G+   G  IH Y  K GLD  ++V  +L+DM+AK   + 
Sbjct: 412 DAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMK 471

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
               +FD M  KD  +W+ +I  +A +G   +++ +F E+    +  D +    +L ACS
Sbjct: 472 YMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACS 531

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
              L+       +S   + G+   +   G +VD+ G  G +D A R  + +  K   + W
Sbjct: 532 GLKLIS-SVKEIHSYIIRKGLSDLVLQNG-IVDVYGECGNVDYAARMFELIEFKDV-VSW 588

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428
            +++ SC  HN  GLA + +E +F L    G
Sbjct: 589 TSMI-SCYVHN--GLANEALE-LFHLMKETG 615



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 163/325 (50%), Gaps = 10/325 (3%)

Query: 122 DYSFPSLLKACACVGAEALEEGKQLHCFAIKL-GLNSNLYVCTTLINLYAECSDVEAARR 180
           D ++ S+L+ C     +AL EG+Q+H   I    L +++++ T L+ +Y +C  +  A +
Sbjct: 114 DEAYSSVLELCG--SKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEK 171

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
           +F+ +    + ++NA+I AY  +  P  +L L+RE++   +     T    L +C LL  
Sbjct: 172 LFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKD 231

Query: 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIV 299
              G  +H    K G    V V  +++ M+ KC  L+ A  +FD M  K D  +W++MI 
Sbjct: 232 RRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMIS 291

Query: 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359
           AY+++GQ  +++ +F EM KA ++P+  TF+  L AC  +  + +G  + ++   K    
Sbjct: 292 AYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGM-FIHATVLKSSYY 350

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIER 419
             +     ++ +  R G++ EA      +    T I W ++LS    +   GL  + ++ 
Sbjct: 351 INVFVANALIAMYARFGKMGEAANIFYNMDDWDT-ISWNSMLSGFVQN---GLYHEALQF 406

Query: 420 IFELDDS-HGGDYVILSNLCARAGR 443
             E+ D+    D V + ++ A + R
Sbjct: 407 YHEMRDAGQKPDLVAVISIIAASAR 431


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  355 bits (910), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 207/602 (34%), Positives = 330/602 (54%), Gaps = 75/602 (12%)

Query: 26  SLLPRC--TSFRGL-KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR- 81
           ++L  C  T  RG+ K++H+  +K  L   + V   L+N   +   T  ++ A ++FDR 
Sbjct: 112 NVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAK---TGDLKMAKVVFDRM 168

Query: 82  ------------------------------IPEPDIVLFNTMARGYSRSKTPIRAIFLFV 111
                                         + E DIV +N+M  G ++      A+  F 
Sbjct: 169 KLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFS 228

Query: 112 ELL-NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA 170
            +L ++ L PD +S  S L ACA +  E L  GKQ+H + ++   +++  V   LI++YA
Sbjct: 229 SILKDTSLKPDRFSLASALSACANL--EKLSFGKQIHGYIVRTMFDASGAVGNALISMYA 286

Query: 171 ECSDVEAARRI---------------------------------FENISEPCVVSYNAII 197
           +   VE ARRI                                 F ++ +P VV++ A+I
Sbjct: 287 KSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMI 346

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
             Y ++   N+A+ +F+ +     +P   T+ + LS+ + + SL+ GK IH    + G  
Sbjct: 347 VGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEA 406

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNM-SGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
               V  AL  M+AK G ++ A  VF+ +   +DT +W++MI+A A HG G ++I +FE+
Sbjct: 407 LSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQ 466

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M+   + PD IT++G+L AC+H GLV++G +YF  M++ + I P + HY CMVDL GRAG
Sbjct: 467 MLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAG 526

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSN 436
            L EAY+F++ +P++   I W +LLSSC  + N+ LAK   ER+  ++ ++ G Y  L+N
Sbjct: 527 LLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALAN 586

Query: 437 LCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDE 496
           + +  G+W+D   +RKLMK RGV K  G S +++ N    F   DG+H    ++ K +D+
Sbjct: 587 VYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDK 646

Query: 497 LVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLR 556
           + KE+K +G+ PDT  V H D+E E K+  LRYHSEKLAI FG+++TP  TT+R++KNLR
Sbjct: 647 IWKEIKKMGFAPDTESVLH-DLEVEVKDQILRYHSEKLAIAFGIISTPENTTLRIMKNLR 705

Query: 557 VC 558
           VC
Sbjct: 706 VC 707



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/417 (27%), Positives = 196/417 (47%), Gaps = 74/417 (17%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +E AH +FD IP  D V + T+  GY++      AI +FV+++   +LP  ++  ++L +
Sbjct: 57  LEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLAS 116

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRI---------- 181
           CA  G+  +  GK++H F +KLGL++ + V  +L+N+YA+  D++ A+ +          
Sbjct: 117 CAATGSRGI--GKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTS 174

Query: 182 ---------------------FENISEPCVVSYNAIITAYARSSRPNEALSLFRE-LQER 219
                                FE +SE  +VS+N++I    +    NEAL  F   L++ 
Sbjct: 175 SWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDT 234

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG----- 274
           +LKP   ++ SALS+CA L  L  GK IH YI +   D    V  ALI M+AK G     
Sbjct: 235 SLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIA 294

Query: 275 -------------------------RLDD---AVSVFDNMSGKDTQAWSAMIVAYATHGQ 306
                                    +L D   A  +F+++   D  AW+AMIV Y  +G 
Sbjct: 295 RRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGL 354

Query: 307 GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYS-MRDKYGIVPGIKHY 365
            + +I +F+ M+     P+  T   +L A S    ++ G     S +R    + P + + 
Sbjct: 355 NNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGN- 413

Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
             +  +  +AG ++ A +  + L      + W +++ + + H   GL ++ IE +FE
Sbjct: 414 -ALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQH---GLGEEAIE-LFE 465



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 107/201 (53%), Gaps = 4/201 (1%)

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
           +   T+++ YA+   +E A ++F+ I     VS+  II  Y +  R  +A+ +F ++ + 
Sbjct: 42  FSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKD 101

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
            + PT  T+ + L+SCA  GS  +GK +H ++ K GL   V V  +L++M+AK G L  A
Sbjct: 102 KVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMA 161

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
             VFD M  ++T +W+AMI  +   G+   ++  FE + +     D +++  ++  C+  
Sbjct: 162 KVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSE----RDIVSWNSMIAGCNQH 217

Query: 340 GLVDEGWNYFYSMRDKYGIVP 360
           G  +E   +F S+     + P
Sbjct: 218 GFDNEALQFFSSILKDTSLKP 238



 Score = 45.4 bits (106), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 33/203 (16%)

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK--- 309
           K GL   V +   L++++AK G   DA  +F+ M  K T +W+ ++  YA  G+  K   
Sbjct: 3   KLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQ 62

Query: 310 ----------------------------SILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341
                                       +I +F +M+K +V P + T   +L +C+ TG 
Sbjct: 63  VFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGS 122

Query: 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
              G    +S   K G+   +     ++++  + G L  A    D + +++T   W  ++
Sbjct: 123 RGIG-KKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSS-WNAMI 180

Query: 402 SSCSSHNNLGLAKQVIERIFELD 424
           S   +   + LA    E + E D
Sbjct: 181 SLHMNCGRVDLALAQFELLSERD 203


>gi|357467379|ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493022|gb|AES74225.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 566

 Score =  355 bits (910), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 200/529 (37%), Positives = 315/529 (59%), Gaps = 17/529 (3%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           Q+HA  IK+  QN  N  +KL  F  Q+P+   + +A LL +  P  +   +NT+ R YS
Sbjct: 6   QLHAQFIKS--QNQRN-FSKLFTFAAQSPS-GDLNYARLLLNTNPSLNSYYYNTIIRAYS 61

Query: 99  RSKTP---IRAIFLFVELLNSGL---LPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
            +  P    +A+ LF+ +L        PD +++   LK+C  +  +  ++ KQLH F  K
Sbjct: 62  HTSNPTHHFQALSLFIFMLQPHTNVPKPDTFTYSFALKSCGRL--KLTQQAKQLHGFINK 119

Query: 153 LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL 212
           +G   +LY+   LI++Y+E  ++  AR++F+ +S   VVS+ ++I  +       EA+ L
Sbjct: 120 MGFGFDLYIQNALIHMYSEIGELVIARQVFDRMSHRDVVSWTSMIAGFVNHHLTVEAIQL 179

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           F+ + E  +   + T++S L  CA  G+L +G+ +H  +K+ G+D    V TALI M++K
Sbjct: 180 FQRMLEVGVDVNEATVISVLRGCADSGALSVGRKVHGIVKEKGIDFKANVCTALIHMYSK 239

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
           CG L+ A  VFD++  +D   W+AMI   A HG   ++I +F EM    V PDE T + +
Sbjct: 240 CGCLESAREVFDDVLDRDVFVWTAMIYGLACHGMCKEAIELFLEMETCNVKPDERTIMVV 299

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L A  + GLV EG+ +F  ++ +Y + P IKH+GCMVDLL + G L+EA  FI+ +P+K 
Sbjct: 300 LSAYRNAGLVREGYMFFNDVQKRYSMKPNIKHFGCMVDLLAKGGCLEEAEDFINAMPMKP 359

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELD--DSH-GGDYVILSNLCARAGRWEDVDY 449
             ++WRTL+ +C  H +   A+++++ + EL    +H  G Y++ SN+ A  G+W D   
Sbjct: 360 DAVIWRTLIWACKVHADTERAERLMKHL-ELQGMSAHDSGSYILASNVYASTGKWCDKAE 418

Query: 450 LRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPD 509
           +R+LM  +G++K PG S IEV+ VV EF  GD  H  +  +   LD++V +L+  GY P 
Sbjct: 419 VRELMNKKGLVKPPGSSRIEVDGVVHEFVMGDYDHPDTEKIFIKLDQMVDKLRKEGYNPK 478

Query: 510 TSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            S V   +M+DEEK I L +HSEKLA+ +GL+ T PG+ IR+VKNLR C
Sbjct: 479 VSEV-MLEMDDEEKAIQLLHHSEKLALAYGLIRTCPGSKIRIVKNLRSC 526


>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
 gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
          Length = 595

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 179/423 (42%), Positives = 262/423 (61%), Gaps = 4/423 (0%)

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
           AL   +QLH   +  G   +  + T+L+  YA   D + AR++F  +     V++N +I+
Sbjct: 134 ALAHARQLHANVVAEGHLRDALLATSLMACYANRGDGDGARKLFGEMPARDAVAWNVLIS 193

Query: 199 AYARSSRPNEALSLFRELQERN--LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
             AR+ R  +AL LF E++ R+   +P DVT +  L +C  LG+LD G+ +  Y +++G 
Sbjct: 194 CCARNRRTKDALKLFEEMRGRDSGAEPDDVTCILLLQACTSLGALDFGEQVWAYAEEHGY 253

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
              +KV  +LI M+++CG +D A  VF     K    WSAMI   A +G G  +I  FEE
Sbjct: 254 GAKLKVRNSLIAMYSRCGCVDKAYRVFCGTPQKSVVTWSAMISGLAANGFGDDAISAFEE 313

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M+++ V+PDE TF G+L ACSH+GLVDEG+ +F  MR +YG+ P ++HYGC+VDL+GRAG
Sbjct: 314 MIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAG 373

Query: 377 RLDEAYRFI-DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
            LDEAY  + +E+ +     +WRTLL +C  H ++ L ++VI  + EL     GDYV+L 
Sbjct: 374 LLDEAYELVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVISNLIELKAQQAGDYVLLL 433

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           N  A  G W  V  +RKLM+++G+   PGC+++E N  V EF + D  H    ++ + L+
Sbjct: 434 NTYAAVGEWSKVSEVRKLMQEKGIQTTPGCTTVEHNGEVYEFIADDDAHPRKVEIYEKLN 493

Query: 496 ELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNL 555
           E+ K+L++ GYVP+ S   H D++ E KE AL YHSEKLAI F LL TP    IR+ KNL
Sbjct: 494 EINKQLRIAGYVPNVSSELH-DLDSEGKESALTYHSEKLAIAFALLVTPQNRPIRLAKNL 552

Query: 556 RVC 558
           RVC
Sbjct: 553 RVC 555



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 162/330 (49%), Gaps = 17/330 (5%)

Query: 24  ALSLLPRCTSFRGLKQIHA-VTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           A+ L PRC +    +Q+HA V  + HL++ L  L   +  C  N      + A  LF  +
Sbjct: 126 AILLKPRC-ALAHARQLHANVVAEGHLRDAL--LATSLMACYAN--RGDGDGARKLFGEM 180

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELL--NSGLLPDDYSFPSLLKACACVGAEAL 140
           P  D V +N +    +R++    A+ LF E+   +SG  PDD +   LL+AC  +GA  L
Sbjct: 181 PARDAVAWNVLISCCARNRRTKDALKLFEEMRGRDSGAEPDDVTCILLLQACTSLGA--L 238

Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY 200
           + G+Q+  +A + G  + L V  +LI +Y+ C  V+ A R+F    +  VV+++A+I+  
Sbjct: 239 DFGEQVWAYAEEHGYGAKLKVRNSLIAMYSRCGCVDKAYRVFCGTPQKSVVTWSAMISGL 298

Query: 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK-KYGLDKY 259
           A +   ++A+S F E+   ++ P + T    LS+C+  G +D G    + ++ +YGL   
Sbjct: 299 AANGFGDDAISAFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPN 358

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDN--MSGKDTQAWSAMIVAYATHGQ---GHKSILMF 314
           V+    ++D+  + G LD+A  +  N      D   W  ++ A   HG    G + I   
Sbjct: 359 VRHYGCIVDLMGRAGLLDEAYELVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVISNL 418

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDE 344
            E +KAQ + D +  L    A      V E
Sbjct: 419 IE-LKAQQAGDYVLLLNTYAAVGEWSKVSE 447


>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
 gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
 gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
 gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
          Length = 534

 Score =  354 bits (909), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 185/502 (36%), Positives = 288/502 (57%), Gaps = 37/502 (7%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           +  L R  S    K+I+A  I   L     ++TK+++FC +      M++A  LF+++  
Sbjct: 14  IPFLQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDK---IEDMDYATRLFNQVSN 70

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL-LPDDYSFPSLLKACACVGAEALEEG 143
           P++ L+N++ R Y+ +      I ++ +LL     LPD ++FP + K+CA +G+  L  G
Sbjct: 71  PNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYL--G 128

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
           KQ+H    K G   ++     LI++Y +  D+  A ++F+ + E  V+S+N++++ YAR 
Sbjct: 129 KQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARL 188

Query: 204 SRPN-------------------------------EALSLFRELQERNLKPTDVTMLSAL 232
            +                                 EA+  FRE+Q   ++P +++++S L
Sbjct: 189 GQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVL 248

Query: 233 SSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ 292
            SCA LGSL+LGKWIH Y ++ G  K   V  ALI+M++KCG +  A+ +F  M GKD  
Sbjct: 249 PSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVI 308

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
           +WS MI  YA HG  H +I  F EM +A+V P+ ITFLGLL ACSH G+  EG  YF  M
Sbjct: 309 SWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMM 368

Query: 353 RDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGL 412
           R  Y I P I+HYGC++D+L RAG+L+ A      +P+K    +W +LLSSC +  NL +
Sbjct: 369 RQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDV 428

Query: 413 AKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNN 472
           A   ++ + EL+    G+YV+L+N+ A  G+WEDV  LRK++++  + K PG S IEVNN
Sbjct: 429 ALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNN 488

Query: 473 VVREFFSGDGVHSYSTDLQKAL 494
           +V+EF SGD    + T++   L
Sbjct: 489 IVQEFVSGDNSKPFWTEISIVL 510


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  354 bits (909), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 196/509 (38%), Positives = 289/509 (56%), Gaps = 24/509 (4%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRS-----------KTPIRAIFLFVELLN----S 116
           ++ AH LFD+IPEPD V +N M   Y RS           K P++ I  +  L++    +
Sbjct: 121 VKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQN 180

Query: 117 GLLPDDYSFPSLLKACACVGAEALEEGKQLHC-------FAIKLGLNSNLYVCTTLINLY 169
           G +   +   S++     V   A+  G   H            +G+ S + V T ++  Y
Sbjct: 181 GQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKS-VVVETAMLTGY 239

Query: 170 AECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTML 229
            +   VE A RIF+ ++   +V++N++I  Y  + R  + L +F+ + E  ++P  +++ 
Sbjct: 240 MKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLS 299

Query: 230 SALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK 289
           S L  C+ L +L LG+ +H+ + K  L K     T+LI M+ KCG LD A  +F  M  K
Sbjct: 300 SVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRK 359

Query: 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYF 349
           D  +W+AMI  YA HG G K++ +F++M    + PD ITF+ ++ AC+H G VD G  YF
Sbjct: 360 DVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYF 419

Query: 350 YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
            SM+ ++GI     HY C++DLLGRAGRLDEA   I E+P K    ++ TLL +C  H N
Sbjct: 420 KSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKN 479

Query: 410 LGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIE 469
           L LA+     +  LD +    YV L+N+ A   +W+ V  +RK+MK+  V+K+PG S IE
Sbjct: 480 LDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIE 539

Query: 470 VNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRY 529
           + +V  EF S D +H   T + K L+EL  ++K+ GYVPD     H D+E+E KE  L +
Sbjct: 540 IKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALH-DVEEEHKEKLLLW 598

Query: 530 HSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           HSEKLAI FGL+ T PGT IRV KNLRVC
Sbjct: 599 HSEKLAIAFGLMKTAPGTPIRVFKNLRVC 627



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/367 (20%), Positives = 155/367 (42%), Gaps = 40/367 (10%)

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           +  S ++AC    A  + E         K+ + + +   T L         V+ A  +F+
Sbjct: 79  TIASFVRACDLESARNVFE---------KMSVRTTVTWNTMLSGYTKVAGKVKEAHELFD 129

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
            I EP  VSYN ++  Y RS     AL+ F ++  +++   +  +     +  +  + DL
Sbjct: 130 KIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDL 189

Query: 244 G---------KW---IHEYIKKYGLD-----------KYVKVNTALIDMHAKCGRLDDAV 280
                      W   I  Y++   L+           K V V TA++  + K G+++ A 
Sbjct: 190 FSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAE 249

Query: 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG 340
            +F  M+ K+   W++MI  Y  + +    + +F+ M++++V P+ ++   +L  CS+  
Sbjct: 250 RIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLS 309

Query: 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400
            +  G    + +  K  +         ++ +  + G LD A++   E+P K   I W  +
Sbjct: 310 ALPLG-RQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDV-ISWNAM 367

Query: 401 LSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL---CARAGRWE-DVDYLRKLMKD 456
           +S  + H     A  + +++   + +   D++    +   C  AG  +  V Y + + K+
Sbjct: 368 ISGYAQHGAGRKALHLFDKM--RNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKE 425

Query: 457 RGVLKVP 463
            G+   P
Sbjct: 426 FGIEAKP 432


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 187/502 (37%), Positives = 295/502 (58%), Gaps = 18/502 (3%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           M+ +  LF ++P  D   +NTM  G  R+     A+ L  +++ +G   +  +F   L  
Sbjct: 470 MQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVL 529

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE-------- 183
            + +    L  GKQ+H   +K+G+  + +V  +LI++Y +C ++E A  IF+        
Sbjct: 530 ASSLSVLGL--GKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSM 587

Query: 184 -NISEPC------VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236
            N  E C       VS++++++ Y ++ R  +AL  F  +    ++    T+ S +S+CA
Sbjct: 588 MNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACA 647

Query: 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSA 296
             G L+LG+ +H YI+K G    V + +++IDM+ KCG L+DA  +F+    ++   W++
Sbjct: 648 SAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTS 707

Query: 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKY 356
           MI   A HGQG +++ +FE M+   ++P+E++F+G+L ACSH GL++EG  YF  MR+ Y
Sbjct: 708 MISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVY 767

Query: 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQV 416
           GI PG +H+ CMVDL GRAGRL+E   FI    I     +WR+ LSSC  H N+ +   V
Sbjct: 768 GIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWV 827

Query: 417 IERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVRE 476
            +++ EL+    G Y++ S++CA   RWE+   +R LM+ RGV K P  S I++ N V  
Sbjct: 828 CKKLLELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVHS 887

Query: 477 FFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAI 536
           F  GD  H   T +   LDEL+  LK +GY  D + V   D+E E++++ L YHSEKLAI
Sbjct: 888 FVMGDRSHPQDTKIYSYLDELIGRLKEIGYSTDVTPVMQ-DVEQEQRQVLLGYHSEKLAI 946

Query: 537 TFGLLNTPPGTTIRVVKNLRVC 558
            +G+++T PGT IRV+KNLRVC
Sbjct: 947 AYGIISTAPGTPIRVMKNLRVC 968



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 97/445 (21%), Positives = 210/445 (47%), Gaps = 70/445 (15%)

Query: 69  TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSL 128
           + ++E AH +F+ IP+ D+  +  +  G++R       + LF ++ + G+ P+ ++   +
Sbjct: 334 SQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSIV 393

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP 188
           LK+C+    ++   GK +H + ++ GL+ +  +  ++++ Y +C     A ++F  ++E 
Sbjct: 394 LKSCSSNVNDS-RIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEK 452

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTD----------------------- 225
             VS+N ++++Y +     +++ LFR+L  ++    +                       
Sbjct: 453 DTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMV 512

Query: 226 --------VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
                   +T   AL   + L  L LGK IH  + K G+     V  +LIDM+ KCG ++
Sbjct: 513 AAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEME 572

Query: 278 DAVSVFDNMSGK---------------DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
            A  +F ++  +               ++ +WS+M+  Y  +G+   ++  F  M+ +QV
Sbjct: 573 KASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQV 632

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH------YGCMVDLLGRAG 376
             D+ T   ++ AC+  G+++ G       R  +G +  I H         ++D+  + G
Sbjct: 633 EVDKFTLTSVVSACASAGVLELG-------RQVHGYIQKIGHGLDVFLGSSIIDMYVKCG 685

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG-----GDY 431
            L++A+   ++   ++  +LW +++S C+ H   G  ++ + R+FEL  + G       +
Sbjct: 686 SLNDAWLIFNQAKDRNV-VLWTSMISGCALH---GQGREAV-RLFELMINEGITPNEVSF 740

Query: 432 VILSNLCARAGRWEDVDYLRKLMKD 456
           V +   C+ AG  E+     +LM++
Sbjct: 741 VGVLTACSHAGLLEEGCKYFRLMRE 765



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 165 LINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT 224
           L+NLYA+  ++E A ++FE I +  V S+  +I+ +AR     + L LF ++Q++ + P 
Sbjct: 327 LLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPN 386

Query: 225 DVTMLSALSSCAL-LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVF 283
             T+   L SC+  +    +GK IH +I + GLD    +N +++D + KC     A  +F
Sbjct: 387 QFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLF 446

Query: 284 DNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
             M+ KDT +W+ M+ +Y   G   KS+ +F ++
Sbjct: 447 GLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQL 480



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 86/211 (40%), Gaps = 40/211 (18%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +Q+H    K     D+ + + +I+   +     S+  A L+F++  + ++VL+ +M  G 
Sbjct: 656 RQVHGYIQKIGHGLDVFLGSSIIDMYVK---CGSLNDAWLIFNQAKDRNVVLWTSMISGC 712

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           +       A+ LF  ++N G+ P++ SF  +L AC+  G   LEEG              
Sbjct: 713 ALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAG--LLEEG-------------- 756

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
                         C      R ++     P    +  ++  Y R+ R NE     +E  
Sbjct: 757 --------------CKYFRLMREVYG--IRPGAEHFTCMVDLYGRAGRLNE----IKEFI 796

Query: 218 ERN-LKPTDVTMLSALSSCALLGSLDLGKWI 247
             N +        S LSSC +  ++++G W+
Sbjct: 797 HNNAISKLSSVWRSFLSSCRVHKNIEMGIWV 827



 Score = 38.9 bits (89), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 38/72 (52%)

Query: 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
           L++++AK   L+ A  +F+ +   D  +W+ +I  +A  G     + +F +M    V P+
Sbjct: 327 LLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPN 386

Query: 326 EITFLGLLYACS 337
           + T   +L +CS
Sbjct: 387 QFTLSIVLKSCS 398


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 192/514 (37%), Positives = 301/514 (58%), Gaps = 35/514 (6%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRS-----------KTPIRAIFLFVELLN----S 116
           ++ A  LFDR+P  D + +N M  GY+++           + PIR +F +  +++    +
Sbjct: 231 LDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQN 290

Query: 117 GLL------------PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTT 164
           G+L             ++ S+ +++     V ++ +E+ ++L  F      N++ +   T
Sbjct: 291 GMLDEATRIFEEMPEKNEVSWNAMI--AGYVQSQQIEKAREL--FDQMPSRNTSSW--NT 344

Query: 165 LINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT 224
           ++  YA+C +++ A+ +F+ + +   +S+ A+I+ YA+S +  EAL LF +++       
Sbjct: 345 MVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILN 404

Query: 225 DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFD 284
              +  ALSSCA + +L+LGK +H  + K G         AL+ M+ KCG +++A  VF+
Sbjct: 405 RSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFE 464

Query: 285 NMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDE 344
           +++ KD  +W+ MI  YA HG G +++ +FE M K  + PD++T +G+L ACSHTG VD+
Sbjct: 465 DITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACSHTGFVDK 523

Query: 345 GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSC 404
           G  YF SM   YGI    KHY CM+DLLGRAGRLDEA   +  +P       W  LL + 
Sbjct: 524 GMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGAS 583

Query: 405 SSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPG 464
             H +  L ++  E++FE++  + G YV+LSNL A +GRW +V  +R  M+D+GV KVPG
Sbjct: 584 RIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPG 643

Query: 465 CSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKE 524
            S +E+ N    F  GD  H  +  +   L+EL  ELK  G+V  T LV H D+E+EEKE
Sbjct: 644 YSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLH-DVEEEEKE 702

Query: 525 IALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             L+YHSEKLA+ FG+L+ PPG  IRV+KNLRVC
Sbjct: 703 HMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVC 736



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 155/301 (51%), Gaps = 21/301 (6%)

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130
           +++ A +LFD +P+ D + +  M  GY++S     A+ LF+++   G + +  +    L 
Sbjct: 354 NIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALS 413

Query: 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV 190
           +CA +   ALE GKQLH   +K G  +       L+ +Y +C  +E A  +FE+I+E  +
Sbjct: 414 SCAEIA--ALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDI 471

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWIHE 249
           VS+N +I  YAR     EAL+LF  ++   +KP DVT++  LS+C+  G +D G ++ + 
Sbjct: 472 VSWNTMIAGYARHGFGKEALALFESMK-MTIKPDDVTLVGVLSACSHTGFVDKGMEYFNS 530

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG-KDTQAWSAMIVAYATHGQ-- 306
             + YG+    K  T +ID+  + GRLD+A+++  +M    D   W A++ A   HG   
Sbjct: 531 MYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTE 590

Query: 307 -GHKSILMFEEMMKAQVSPDE---ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGI--VP 360
            G K+     EM      PD       L  LYA S  G   E       MRDK G+  VP
Sbjct: 591 LGEKAAEKVFEM-----EPDNSGMYVLLSNLYAAS--GRWREVREMRSKMRDK-GVKKVP 642

Query: 361 G 361
           G
Sbjct: 643 G 643



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 176/382 (46%), Gaps = 49/382 (12%)

Query: 69  TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSL 128
             ++  A  LF+++PE D+V +N M  G++++     A  +F ++    L+ ++ S+  L
Sbjct: 135 NGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM----LVKNEISWNGL 190

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP 188
           L A    G   +E+ ++L  F  K+      + C  L+  Y     ++ AR +F+ +   
Sbjct: 191 LSAYVQNG--RIEDARRL--FDSKMDWEIVSWNC--LMGGYVRKKRLDDARSLFDRMPVR 244

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL-GSLDLGKWI 247
             +S+N +IT YA++   +EA  LF EL  R     DV   +A+ S  +  G LD    I
Sbjct: 245 DKISWNIMITGYAQNGLLSEARRLFEELPIR-----DVFAWTAMVSGFVQNGMLDEATRI 299

Query: 248 HE----------------YIKKYGLDKYVKV-------NTA----LIDMHAKCGRLDDAV 280
            E                Y++   ++K  ++       NT+    ++  +A+CG +D A 
Sbjct: 300 FEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAK 359

Query: 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG 340
            +FD M  +D  +W+AMI  YA  GQ  +++ +F +M +     +       L +C+   
Sbjct: 360 ILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIA 419

Query: 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400
            ++ G    +    K G   G      ++ + G+ G ++EA+   +++  K   + W T+
Sbjct: 420 ALELG-KQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDI-VSWNTM 477

Query: 401 LSSCSSHNNLGLAKQVIERIFE 422
           ++  + H   G  K+ +  +FE
Sbjct: 478 IAGYARH---GFGKEALA-LFE 495



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 151/308 (49%), Gaps = 26/308 (8%)

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
           + +L     +++ Y +  ++ AAR +F  + E  VVS+NA+++ +A++    EA  +F +
Sbjct: 119 DRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQ 178

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
           +  +N    +++    LS+    G ++  + + +      +D  +     L+  + +  R
Sbjct: 179 MLVKN----EISWNGLLSAYVQNGRIEDARRLFDS----KMDWEIVSWNCLMGGYVRKKR 230

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP--DEITFLGLL 333
           LDDA S+FD M  +D  +W+ MI  YA +G   ++  +FEE+      P  D   +  ++
Sbjct: 231 LDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEEL------PIRDVFAWTAMV 284

Query: 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
                 G++DE    F  M +K  +      +  M+    ++ ++++A    D++P ++T
Sbjct: 285 SGFVQNGMLDEATRIFEEMPEKNEV-----SWNAMIAGYVQSQQIEKARELFDQMPSRNT 339

Query: 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLR-K 452
              W T+++  +   N+  AK + + + + D      +  + +  A++G+ E+  +L  K
Sbjct: 340 SS-WNTMVTGYAQCGNIDQAKILFDEMPQRDCI---SWAAMISGYAQSGQSEEALHLFIK 395

Query: 453 LMKDRGVL 460
           + +D G+L
Sbjct: 396 MKRDGGIL 403



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 119/266 (44%), Gaps = 49/266 (18%)

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           ++S++      I+ Y      E+A  +F  +     V+YNA+I+ Y  +++ + A  +F 
Sbjct: 56  VDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFE 115

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
           ++ +R+L   +V MLS                                       + K G
Sbjct: 116 KMPDRDLISWNV-MLSG--------------------------------------YVKNG 136

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
            L  A ++F+ M  KD  +W+AM+  +A +G   ++  +F++M+      +EI++ GLL 
Sbjct: 137 NLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML----VKNEISWNGLLS 192

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           A    G +++    F S  D + IV     + C++    R  RLD+A    D +P++   
Sbjct: 193 AYVQNGRIEDARRLFDSKMD-WEIVS----WNCLMGGYVRKKRLDDARSLFDRMPVRD-K 246

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERI 420
           I W  +++  + +  L  A+++ E +
Sbjct: 247 ISWNIMITGYAQNGLLSEARRLFEEL 272


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 175/403 (43%), Positives = 268/403 (66%), Gaps = 3/403 (0%)

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           NL     ++  Y +  ++E AR++F  +     VS++ +I  +A +    EA   FRELQ
Sbjct: 202 NLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQ 261

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           +  ++P +V++  ALS+CA  G+++ GK +H +I+K G    V VN AL+D ++KCG + 
Sbjct: 262 QVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVG 321

Query: 278 DAVSVFDNMSGKDT-QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
            A  VF+ M  K +  +W++MI   A HG G ++I +F EM ++ + PD I F+ +LYAC
Sbjct: 322 MARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYAC 381

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           SH GL+++G+ YFY M+D Y I P I+HYGCMVDL GRAG+LD+AY FI  +P+  T I+
Sbjct: 382 SHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAII 441

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
           WRTLL +CS H N+ LA++V ER+ ELD ++ GD+V+LSN+ A AG+W+DV  +R+ M D
Sbjct: 442 WRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTD 501

Query: 457 RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVG-YVPDTSLVHH 515
           + + K PG S IEV+ ++  F +G+  +S + +  + L E++ +L++ G Y+P+   V H
Sbjct: 502 QRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYEKLKEIMLKLRVEGCYIPEVGSVLH 561

Query: 516 GDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            D+EDEEKE ++  HSEKLA+ FG+     G+ IR+VKNLRVC
Sbjct: 562 -DIEDEEKEDSVSRHSEKLAVAFGIARLCKGSIIRIVKNLRVC 603



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 129/437 (29%), Positives = 213/437 (48%), Gaps = 53/437 (12%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP 85
           SLL  C S + LKQ+HA   KT L  D  +  KL+   +      ++++A  LF   P P
Sbjct: 10  SLLTNCRSLKNLKQVHAYVCKTGLDTDPIIAGKLL-LHSAVSVPDALDYARRLFLHFPNP 68

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP-DDYSFPSLLKACACVGAEALEEGK 144
           D+ + NT+ RG + S TP  ++  FVE+      P D +SF  LLKA A     +LE G 
Sbjct: 69  DVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAA--SYRSLESGI 126

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           QLHC AI  GL+++L+V TTL+++Y+EC  V  A+++FE + EP VV++NA++TA  R  
Sbjct: 127 QLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCG 186

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
               A  +F  +  RNL   +V ML+                                  
Sbjct: 187 DVKGADMMFNRMPFRNLTSWNV-MLAG--------------------------------- 212

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
                + K G L+ A  +F  M  KD  +WS MIV +A +G  +++   F E+ +  + P
Sbjct: 213 -----YTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRP 267

Query: 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF 384
           +E++  G L AC+  G ++ G    +   +K G +  +     ++D   + G +  A   
Sbjct: 268 NEVSLTGALSACADAGAIEFG-KILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLV 326

Query: 385 IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS----HGGDYVILSNLCAR 440
            + +P K + + W ++++  + H   G  ++ I+   E+++S     G  ++ +   C+ 
Sbjct: 327 FERMPEKRSIVSWTSMIAGLAMH---GYGEEAIQLFHEMEESGIRPDGIAFISILYACSH 383

Query: 441 AGRWED-VDYLRKLMKD 456
           AG  E   +Y  K MKD
Sbjct: 384 AGLIEKGYEYFYK-MKD 399



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 121/241 (50%), Gaps = 11/241 (4%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +E A  LF  +P  D V ++TM  G++ +     A   F EL   G+ P++ S    L A
Sbjct: 219 LELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSA 278

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP-CV 190
           CA  GA  +E GK LH F  K G    + V   L++ Y++C +V  AR +FE + E   +
Sbjct: 279 CADAGA--IEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSI 336

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY 250
           VS+ ++I   A      EA+ LF E++E  ++P  +  +S L +C+  G ++ G   +EY
Sbjct: 337 VSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKG---YEY 393

Query: 251 IKK----YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ-AWSAMIVAYATHG 305
             K    Y ++  ++    ++D++ + G+LD A     +M    T   W  ++ A + HG
Sbjct: 394 FYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHG 453

Query: 306 Q 306
            
Sbjct: 454 N 454


>gi|357137130|ref|XP_003570154.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Brachypodium distachyon]
          Length = 622

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 198/531 (37%), Positives = 306/531 (57%), Gaps = 10/531 (1%)

Query: 35  RGLKQI---HAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFN 91
           RGL ++   HA  +K  L         L+  C        ME+A  +F  + EP+   +N
Sbjct: 53  RGLDEVRKAHARHVKLGLDRSPRHARPLLAACALGSWPGGMEYAAAIFAALDEPEAFDYN 112

Query: 92  TMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAI 151
           T+ RG+     P  A+ L+  +L  G+ PD Y+FP +LKACA + A    +G+QLH    
Sbjct: 113 TLMRGHVAHDDPAAALRLYAAMLEQGVEPDRYTFPFVLKACARLAASG--QGRQLHGHVA 170

Query: 152 KLGLNS-NLYVCTTLINLYAECSDVEAARRIFENIS---EPCVVSYNAIITAYARSSRPN 207
           KLG +  + +V  +LI+ Y  C + E ARR FE +         S++A++ AY R+    
Sbjct: 171 KLGFSQHDEHVGNSLISFYGRCGEPELARRAFEQMEAEESTTAASWSALLAAYTRAGLWA 230

Query: 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267
           + L  F  +     +P + +M+SALS+CA LG+ D+G+ IH  + +  +     + T+L+
Sbjct: 231 DCLDSFGAMARAGGRPEESSMVSALSACAHLGAYDVGRSIHCALLRNTVALNTFMETSLV 290

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
           DM+AKCG +D A +VFD M GK+   +SAM+   A HG G K++ +F+ M +    PDE 
Sbjct: 291 DMYAKCGCIDKASAVFDAMDGKNEWTYSAMVSGLALHGDGLKALQVFDAMAREGHKPDEA 350

Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
            ++G+L ACS +GL++EG   F  MR ++ + P  +HYGCMVDL+ RAGRLD+A   I  
Sbjct: 351 VYVGILNACSRSGLLEEGLRCFDRMRLEHKVAPNAQHYGCMVDLMARAGRLDDARALIGS 410

Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447
           +P   T   WR+LL++C  H N+ LA++ ++ +  +   + GDYVIL+++ AR   W+  
Sbjct: 411 MPTGPTDAAWRSLLNACRIHGNVELAERALQGLSGIGAVNAGDYVILADMHARTKNWDAA 470

Query: 448 DYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYV 507
             LR    +RG+ + PG S++EV+     F S D  H  + ++ + L ++  +L+  GY 
Sbjct: 471 AALRTEAANRGLAQAPGFSAVEVHGRAHRFASQDRSHPRTAEIYEMLHQMEWQLRFEGYE 530

Query: 508 PDTSLVH-HGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRV 557
           PDTS V    D  +EEK  A+  HS+KLA+ FGLL+TP GT +RVV NLR+
Sbjct: 531 PDTSEVALTRDAGEEEKRRAVAAHSQKLAMAFGLLSTPEGTPVRVVTNLRM 581


>gi|356537359|ref|XP_003537195.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g13770, mitochondrial-like
           [Glycine max]
          Length = 600

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 205/544 (37%), Positives = 312/544 (57%), Gaps = 12/544 (2%)

Query: 20  NTPNALSLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N  +  ++L  C S R  K+   +HA TIKTH    + + T+LI F T+  +     H  
Sbjct: 25  NLQDYNTVLNECVSKRAFKEGQRVHAHTIKTHYLPCVYLWTRLIVFYTKCDSLGDARH-- 82

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            + + +PE ++V +  M   YS+     +A+ + V++L SG   ++++F ++        
Sbjct: 83  -VLNEMPERNVVSWTAMISAYSQRGYASQALSILVQILRSGTESNEFTFATMPYFMYRFL 141

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
              L E   +H   IKL   +++YV ++L+++YA+   +  AR IFE + E  VVS  AI
Sbjct: 142 GFCLREA--IHSLIIKLNFKAHVYVGSSLLDMYAKDGKIHEARGIFECLPERDVVSCTAI 199

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           I+ YA+    +E L LF  LQ   +    VT  S L++ + L +LD GK +H ++    +
Sbjct: 200 ISGYAQLD-LDEELELFLRLQREGMXSNYVTYTSVLTALSGLAALDHGKQVHNHLLCSEV 258

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
             +V +  +LIDM++KCG L  A  +FD M  +   +W+AM+V Y+ HG+  + + +F  
Sbjct: 259 PSFVILQNSLIDMYSKCGNLTYARRIFDTMRERTVISWNAMLVGYSKHGERREVLELFNL 318

Query: 317 MM-KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD-KYGIVPGIKHYGCMVDLLGR 374
           M  + +V PD +T L +L  CSH G  D+G + FY M   K  + P  K YGC+VDLLGR
Sbjct: 319 MRDENKVKPDSVTVLAVLSGCSHGGQEDKGMDIFYDMTSGKISVQPDTKRYGCVVDLLGR 378

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
           AGR++EA+ FI ++P + +  +   LL +CS H+NLG+ + V  R+ E +  + G+YVIL
Sbjct: 379 AGRVEEAFEFIKKIPFEPSAAICGCLLGACSVHSNLGIGEFVGHRLLEFEPENAGNYVIL 438

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
           SNL A AGRWEDV  LR LM  + V K PG S IEV+ V++ F   D  H    ++    
Sbjct: 439 SNLYASAGRWEDVTSLRNLMLKKAVTKEPGRSLIEVDQVLQTFHPSDCSHPRREEVSAKX 498

Query: 495 DELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
            EL+   K  GY PD S V H D+++E+KE  L  HSEKLA++FGL+ TP    I V+KN
Sbjct: 499 QELLVRFKEAGYFPDLSCVLH-DVDEEQKEKILLSHSEKLALSFGLIATPESVLICVIKN 557

Query: 555 LRVC 558
           LR+C
Sbjct: 558 LRIC 561


>gi|147852347|emb|CAN80116.1| hypothetical protein VITISV_032528 [Vitis vinifera]
          Length = 505

 Score =  354 bits (908), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 182/501 (36%), Positives = 295/501 (58%), Gaps = 15/501 (2%)

Query: 7   PPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQN 66
           PP   +    L +     LSLL  C+S + L QI              +   L+ FC  +
Sbjct: 14  PPKPSNGNLNLVSTKQQCLSLLNLCSSMKHLFQIRGHGF---------IAGPLLRFCASS 64

Query: 67  PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFP 126
           P   ++ HA +L     + ++  +N + R Y+   +P  AI  ++E+ + G+ PD  +FP
Sbjct: 65  PL-GNLNHARVLLSGSEKSEVSSWNDLIRSYATRDSPREAIGAYLEMRSLGISPDKLTFP 123

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS 186
            LLKACA +   A  EG+++    +K GL+ N+YV  T+I+ Y  C  +  ARR+F+ +S
Sbjct: 124 ILLKACAXI--SAFNEGRKIQVDVMKHGLDCNVYVQNTMIHFYGSCKRIRDARRMFDEMS 181

Query: 187 EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW 246
              VVS+NA+++A   +   N++  LF +++     P + TM+  LS+C+ LG+L  G+W
Sbjct: 182 YRTVVSWNAVLSACVDNEWLNDSFGLFVKMRGSGFDPDETTMVILLSACSELGNLSFGRW 241

Query: 247 IHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ 306
           +H  + + G+    ++ TAL+DM+AKCG + +A  VF  M  ++   WSAMI+  A HG 
Sbjct: 242 VHSQVIEKGMVVNCRLGTALVDMYAKCGAVCEASLVFHRMLERNVWTWSAMILGLAQHGF 301

Query: 307 GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG 366
             +++ +F +M ++ +SP+ +TFLG+L ACSH GLVD+G+ +F+ M   +GI P + HYG
Sbjct: 302 AKEALELFPKMKQSSISPNYVTFLGVLCACSHAGLVDDGYRFFHDMEYVHGIEPMMIHYG 361

Query: 367 CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH---NNLGLAKQVIERIFEL 423
            MVD+L RAGRL EAY FI  +P+++ P++WRTLLS+C+ H   +N G+  +V +R+ EL
Sbjct: 362 AMVDILSRAGRLKEAYNFILNMPVEADPVVWRTLLSACTIHGINDNDGVGDKVRKRLLEL 421

Query: 424 DDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGV 483
           +    G++V+++N+ A  G+W+    +R+ MKD G+ K+ G S IEV   +  FFSGD  
Sbjct: 422 EPRRSGNFVMVANMYAEVGKWDKAANVRRTMKDTGLKKMAGESCIEVGGSIHRFFSGDDP 481

Query: 484 HSYSTDLQKALDELVKELKMV 504
                D+ + LD L   +K V
Sbjct: 482 QLDCEDVLQLLDGLNLHMKTV 502


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 202/544 (37%), Positives = 318/544 (58%), Gaps = 11/544 (2%)

Query: 20  NTPNALSLLPRCTSFR---GLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           +T    S+LP C       G   +H   IK  L++D+ V   LIN  ++      ++ A 
Sbjct: 247 DTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSK---FGRLQDAQ 303

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +FD +   D+V +N++   Y ++  P+ A+  F E+L  G+ PD  +  SL      + 
Sbjct: 304 RVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLS 363

Query: 137 AEALEEGKQLHCFAIKL-GLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
              +  G+ +H F ++   L  ++ +   L+N+YA+   ++ AR +FE +    V+S+N 
Sbjct: 364 DRRI--GRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNT 421

Query: 196 IITAYARSSRPNEALSLFRELQE-RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           +IT YA++   +EA+  +  ++E R + P   T +S L + + +G+L  G  IH  + K 
Sbjct: 422 LITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKN 481

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
            L   V V T LIDM+ KCGRL+DA+S+F  +  + +  W+A+I +   HG G K++ +F
Sbjct: 482 CLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLF 541

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
           ++M    V  D ITF+ LL ACSH+GLVDE    F +M+ +Y I P +KHYGCMVDL GR
Sbjct: 542 KDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGR 601

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
           AG L++AY  +  +PI++   +W TLL++C  H N  L     +R+ E+D  + G YV+L
Sbjct: 602 AGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYVLL 661

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
           SN+ A  G+WE    +R L +DRG+ K PG SS+ V +VV  F++G+  H    ++ + L
Sbjct: 662 SNIYANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVGSVVEVFYAGNQSHPQCAEIYEEL 721

Query: 495 DELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
             L  ++K +GYVPD S V   D+E++EKE  L  HSE+LAI FG+++TPP + IR+ KN
Sbjct: 722 RVLNAKMKSLGYVPDYSFVLQ-DVEEDEKEEILTSHSERLAIVFGIISTPPKSPIRIFKN 780

Query: 555 LRVC 558
           LRVC
Sbjct: 781 LRVC 784



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/395 (30%), Positives = 207/395 (52%), Gaps = 25/395 (6%)

Query: 31  CTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLF 90
           CT+    KQ+HA+ +      D+ +LT+L+   T   T   +  +   F  I   +I  +
Sbjct: 61  CTNINVAKQLHALLLVLGKAQDVVLLTQLV---TLYATLGDLSLSSTTFKHIQRKNIFSW 117

Query: 91  NTMARGYSRSKTPIRAIFLFVELLN-SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCF 149
           N+M   Y R      ++    ELL+ SG+ PD Y+FP +LKAC      +L +G+++HC+
Sbjct: 118 NSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACL-----SLADGEKMHCW 172

Query: 150 AIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEA 209
            +K+G   ++YV  +LI+LY+    VE A ++F ++    V S+NA+I+ + ++    EA
Sbjct: 173 VLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEA 232

Query: 210 LSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDM 269
           L +   ++   +K   VT+ S L  CA    +  G  +H Y+ K+GL+  V V+ ALI+M
Sbjct: 233 LRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINM 292

Query: 270 HAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITF 329
           ++K GRL DA  VFD M  +D  +W+++I AY  +     ++  F+EM+   + PD +T 
Sbjct: 293 YSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTV 352

Query: 330 LGLLYACSHTGLVDEGWN---YFYSMRDKY---GIVPGIKHYGCMVDLLGRAGRLDEAYR 383
           + L  A     L D       + + +R ++    IV G      +V++  + G +D A  
Sbjct: 353 VSL--ASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIG----NALVNMYAKLGSIDCARA 406

Query: 384 FIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
             ++LP +   I W TL++  + +   GLA + I+
Sbjct: 407 VFEQLPSRDV-ISWNTLITGYAQN---GLASEAID 437


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 189/471 (40%), Positives = 285/471 (60%), Gaps = 8/471 (1%)

Query: 41  HAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRS 100
           H++  K  L +D +    LI    +    +S   A  +FD IP  D V +N+M  GY+++
Sbjct: 145 HSLLFKLALHSDPHTAHSLITAYARCGLVAS---ARKVFDEIPHRDSVSWNSMIAGYAKA 201

Query: 101 KTPIRAIFLFVEL-LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
                A+ +F E+    G  PD+ S  SLL AC  +G   LE G+ +  F ++ G+  N 
Sbjct: 202 GCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGD--LELGRWVEGFVVERGMTLNS 259

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
           Y+ + LI++YA+C ++E+ARRIF+ ++   V+++NA+I+ YA++   +EA+ LF  ++E 
Sbjct: 260 YIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKED 319

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
            +    +T+ + LS+CA +G+LDLGK I EY  + G    + V TALIDM+AK G LD+A
Sbjct: 320 CVTANKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNA 379

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK--AQVSPDEITFLGLLYACS 337
             VF +M  K+  +W+AMI A A HG+  +++ +F+ M        P++ITF+GLL AC 
Sbjct: 380 QRVFKDMPQKNEASWNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSACV 439

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H GLVDEG+  F  M   +G+VP I+HY CMVDLL RAG L EA+  I ++P K   +  
Sbjct: 440 HAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIRKMPEKPDKVTL 499

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             LL +C S  N+ + ++V+  I E+D S+ G+Y+I S + A    WED   +R LM+ +
Sbjct: 500 GALLGACRSKKNVDIGERVMRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQK 559

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVP 508
           G+ K PGCS IEV N + EF +GDG+   S DL   +D L +ELK  GYVP
Sbjct: 560 GITKTPGCSWIEVENHLHEFHAGDGLCLDSIDLSNIIDLLYEELKREGYVP 610



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 131/433 (30%), Positives = 229/433 (52%), Gaps = 37/433 (8%)

Query: 27  LLPRCTSFRGLKQIH---AVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI- 82
           L  +C+S + L+Q+H    V    H  N+ ++L+K I+         +  ++ LLF  I 
Sbjct: 30  LAKQCSSTKTLQQVHTQMVVNSSIHTPNN-HLLSKAIHL-------KNFPYSSLLFSHIA 81

Query: 83  PEPDIVLFNTMARGYSRS--KTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEAL 140
           P P+   FN M R  + +    P+ A+ LF  +++  L PD+++FP    +CA + +  L
Sbjct: 82  PHPNDYAFNIMIRALTTTWHNYPL-ALSLFHRMMSLSLTPDNFTFPFFFLSCANLAS--L 138

Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY 200
                 H    KL L+S+ +   +LI  YA C  V +AR++F+ I     VS+N++I  Y
Sbjct: 139 SHACAAHSLLFKLALHSDPHTAHSLITAYARCGLVASARKVFDEIPHRDSVSWNSMIAGY 198

Query: 201 ARSSRPNEALSLFRELQERN-LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
           A++    EA+ +FRE+  R+  +P +++++S L +C  LG L+LG+W+  ++ + G+   
Sbjct: 199 AKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVEGFVVERGMTLN 258

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
             + +ALI M+AKCG L+ A  +FD M+ +D   W+A+I  YA +G   ++IL+F  M +
Sbjct: 259 SYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKE 318

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH----YGCMVDLLGRA 375
             V+ ++IT   +L AC+  G +D G        D+Y    G +H       ++D+  ++
Sbjct: 319 DCVTANKITLTAVLSACATIGALDLG-----KQIDEYASQRGFQHDIFVATALIDMYAKS 373

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG------ 429
           G LD A R   ++P K+    W  ++S+ ++H   G AK+ +     + D  GG      
Sbjct: 374 GSLDNAQRVFKDMPQKNEAS-WNAMISALAAH---GKAKEALSLFQHMSDEGGGARPNDI 429

Query: 430 DYVILSNLCARAG 442
            +V L + C  AG
Sbjct: 430 TFVGLLSACVHAG 442


>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Glycine max]
          Length = 534

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 184/512 (35%), Positives = 306/512 (59%), Gaps = 35/512 (6%)

Query: 16  KLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           K  ++ P    L  +CT+ + L++IHA  IKT L +     ++++ FC    ++  + +A
Sbjct: 20  KFISDQPCLTMLQTQCTNMKDLQKIHAHIIKTGLAHHTVAASRVLTFCAS--SSGDINYA 77

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
           +LLF  IP P++  +NT+ RG+SRS TP  AI LFV++L S +LP   ++PS+ KA A +
Sbjct: 78  YLLFTTIPSPNLYCWNTIIRGFSRSSTPHLAISLFVDMLCSSVLPQRLTYPSVFKAYAQL 137

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA------------------------- 170
           GA    +G QLH   +KLGL  + ++  T+I +YA                         
Sbjct: 138 GAGY--DGAQLHGRVVKLGLEKDQFIQNTIIYMYANSGLLSEARRVFDELVDLDVVACNS 195

Query: 171 ------ECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT 224
                 +C +V+ +RR+F+N+     V++N++I+ Y R+ R  EAL LFR++Q   ++P+
Sbjct: 196 MIMGLAKCGEVDKSRRLFDNMPTRTRVTWNSMISGYVRNKRLMEALELFRKMQGERVEPS 255

Query: 225 DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFD 284
           + TM+S LS+CA LG+L  G+W+H+Y+K+   +  V V TA+IDM+ KCG +  A+ VF+
Sbjct: 256 EFTMVSLLSACAHLGALKHGEWVHDYVKRGHFELNVIVLTAIIDMYCKCGVIVKAIEVFE 315

Query: 285 NMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDE 344
               +    W+++I+  A +G   K+I  F ++  + + PD ++F+G+L AC + G V +
Sbjct: 316 ASPTRGLSCWNSIIIGLALNGYERKAIEYFSKLEASDLKPDHVSFIGVLTACKYIGAVGK 375

Query: 345 GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSC 404
             +YF  M +KY I P IKHY CMV++LG+A  L+EA + I  +P+K+  I+W +LLSSC
Sbjct: 376 ARDYFSLMMNKYEIEPSIKHYTCMVEVLGQAALLEEAEQLIKGMPLKADFIIWGSLLSSC 435

Query: 405 SSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPG 464
             H N+ +AK+  +R+ EL+ S    Y+++SN+ A + ++E+    R LM++R   K PG
Sbjct: 436 RKHGNVEIAKRAAQRVCELNPSDASGYLLMSNVQAASNQFEEAMEQRILMRERLAEKEPG 495

Query: 465 CSSIEVNNVVREFFSGDGVHSYSTDLQKALDE 496
           CSSIE+   V EF +G  +H  + ++   L++
Sbjct: 496 CSSIELYGEVHEFLAGGRLHPKAREIYYLLND 527


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  353 bits (907), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 190/505 (37%), Positives = 284/505 (56%), Gaps = 36/505 (7%)

Query: 89  LFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA--EALEEGKQL 146
           L + + R ++ S  P  A+ L+  L+ +GL P  ++ PSLLK+ A   A   A      +
Sbjct: 55  LHDALIRAHASSGRPQAALPLYAHLIRAGLFPTPHTLPSLLKSLALSPAVPGARRLALAV 114

Query: 147 HCFAIKLGLNSNLYV--------------------------------CTTLINLYAECSD 174
           H  A++LGL   L V                                  TLI  +A    
Sbjct: 115 HAHAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARAGR 174

Query: 175 VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSS 234
           V  AR +F+ + E   VS++A++  Y ++    EAL +F ++Q + ++P D  ++  L++
Sbjct: 175 VADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAA 234

Query: 235 CALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAW 294
           CA LG+L+ GKW+H Y+K   +   V + TAL+DM+AKCG +   + VF+ M  K+  AW
Sbjct: 235 CAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAW 294

Query: 295 SAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD 354
           + MI   A HG+G  S+ +F +M  + V PD+I F+G L AC+HTGLVD+G   F SM +
Sbjct: 295 TTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVN 354

Query: 355 KYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAK 414
            YGI P I+HYGCMVDLL R G L EA   ++++P+K   ++W  L++ C  H N+ LA+
Sbjct: 355 NYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVELAE 414

Query: 415 QVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVV 474
            VI+   EL+    G YV+L N+ + +GR      +R LM+++GV K PGCS++E+  V+
Sbjct: 415 YVIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMREKGVEKTPGCSNVEIKGVI 474

Query: 475 REFFSGDGVHSYSTDLQKALDELVKELKM-VGYVPDTSLVHHGDMEDEEKEIALRYHSEK 533
            +F  GD  H    D+     E+   +++  GYVPD   V   D+E+EE E AL  HSEK
Sbjct: 475 HQFIVGDLSHPRIKDILTKWYEIDSRIRLEEGYVPDKKEVLL-DIEEEEMESALSRHSEK 533

Query: 534 LAITFGLLNTPPGTTIRVVKNLRVC 558
           LAI F L++T     IR+VKNLRVC
Sbjct: 534 LAIAFALISTEDYMPIRIVKNLRVC 558



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 155/300 (51%), Gaps = 16/300 (5%)

Query: 45  IKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPI 104
           ++T    D +    LI   T +     +  A  LFD +PE + V ++ M  GY ++    
Sbjct: 151 LRTSAAVDASTFNTLI---TAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGR 207

Query: 105 RAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTT 164
            A+ +F ++   G+ PDD     +L ACA +GA  LE+GK +H +     +   +++ T 
Sbjct: 208 EALGVFSQMQAQGVRPDDTVLVGVLAACAQLGA--LEQGKWVHGYLKANNIRMTVFLGTA 265

Query: 165 LINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT 224
           L+++YA+C +V+    +FE + +  V+++  +I   A   R +++L+LF +++   +KP 
Sbjct: 266 LVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPD 325

Query: 225 DVTMLSALSSCALLGSLDLGKWI-HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVF 283
           D+  + AL +C   G +D G+ + +  +  YG+   ++    ++D+ A+ G L +A  + 
Sbjct: 326 DIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMV 385

Query: 284 DNMSGK-DTQAWSAMIVAYATHGQGHKSILMFEEMMK--AQVSPDE---ITFLGLLYACS 337
           + M  K D   W A++       + HK++ + E ++K   ++ PD+      LG +Y+ S
Sbjct: 386 EKMPMKPDALIWGALMAGC----RFHKNVELAEYVIKHWIELEPDKSGAYVLLGNIYSAS 441



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 128/303 (42%), Gaps = 54/303 (17%)

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS---------YNAIITAYARSSR 205
           L   + V    + L + CS    AR I   I    V S         ++A+I A+A S R
Sbjct: 10  LRDAMVVVRRYVELLSRCSGGADARPI-ARIQAALVTSGLLRRSAELHDALIRAHASSGR 68

Query: 206 PNEALSLFRELQERNLKPTDVTMLSALSSCALL----GSLDLGKWIHEYIKKYGLDKYVK 261
           P  AL L+  L    L PT  T+ S L S AL     G+  L   +H +  + GL  ++ 
Sbjct: 69  PQAALPLYAHLIRAGLFPTPHTLPSLLKSLALSPAVPGARRLALAVHAHAVRLGLAGFLL 128

Query: 262 VNTALIDM--------------------------------HAKCGRLDDAVSVFDNMSGK 289
           VN ALI +                                HA+ GR+ DA S+FD M  +
Sbjct: 129 VNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARAGRVADARSLFDEMPER 188

Query: 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-W-- 346
           +  +WSAM+  Y   G G +++ +F +M    V PD+   +G+L AC+  G +++G W  
Sbjct: 189 NAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGKWVH 248

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
            Y  +   +  +  G      +VD+  + G +       + +  K+  + W T++   + 
Sbjct: 249 GYLKANNIRMTVFLGT----ALVDMYAKCGEVQLGMEVFEGMKDKNV-LAWTTMIKGLAM 303

Query: 407 HNN 409
           H  
Sbjct: 304 HGR 306


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  353 bits (907), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 206/544 (37%), Positives = 314/544 (57%), Gaps = 14/544 (2%)

Query: 22  PNAL---SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PN     S+L  CTS   L   +QIH   IKT  Q ++ V + LI+   +      +  A
Sbjct: 461 PNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAK---YGQLALA 517

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
             +  R+PE D+V +  M  GY +      A+ LF E+   G+  D+  F S + ACA  
Sbjct: 518 LRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACA-- 575

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
           G  AL +G+Q+H  +   G  ++L +   LI+LYA C  ++ A   FE I +   +S+N+
Sbjct: 576 GIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNS 635

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +++  A+S    EAL +F  +     +    T  SA+S+ A L ++  G+ IH  + K G
Sbjct: 636 LVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTG 695

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
            D   +V+ +LI ++AK G + DA   F++MS ++  +W+AMI  Y+ HG G +++ +FE
Sbjct: 696 YDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFE 755

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
           EM    + P+ +TF+G+L ACSH GLV EG +YF SM   + +VP  +HY C+VDLLGRA
Sbjct: 756 EMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRA 815

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
           G+LD A  +I E+PI +  ++WRTLLS+C  H N+ + ++    + EL+      YV++S
Sbjct: 816 GQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLIS 875

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           N+ A + +W   D+ RKLMKDRGV K PG S IEV N V  F++GD +H  +  + + + 
Sbjct: 876 NIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIG 935

Query: 496 ELVKELKMVGYVPDT-SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
            L +    +GYV D+ SL++  + E  +K+     HSEKLAI FGLL+      IRV+KN
Sbjct: 936 HLNRRTSEIGYVQDSFSLLN--ESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKN 993

Query: 555 LRVC 558
           LRVC
Sbjct: 994 LRVC 997



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/412 (28%), Positives = 204/412 (49%), Gaps = 10/412 (2%)

Query: 13  PPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSM 72
           P P + ++    LS   +   F   +Q+H + IK    ++  V   L+   +++    S 
Sbjct: 259 PTPYVLSSV---LSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISA 315

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
           E    +F  +   D V +N++  G  +     RA+ LF ++    L PD  +  SLL AC
Sbjct: 316 ER---IFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSAC 372

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
           A VGA  L +G QLH  AIK G+++++ +  +L++LY++C+DVE A + F       +V 
Sbjct: 373 ASVGA--LHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVL 430

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +N ++ AY +    +++  +FR++Q   + P   T  S L +C  LG+L LG+ IH ++ 
Sbjct: 431 WNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVI 490

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           K G    V V + LIDM+AK G+L  A+ +   +   D  +W+AMI  Y  H    +++ 
Sbjct: 491 KTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQ 550

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           +FEEM    +  D I F   + AC+    + +G    ++     G    +     ++ L 
Sbjct: 551 LFEEMEYRGIQFDNIGFASAISACAGIRALRQG-QQIHAQSYAAGFGADLSINNALISLY 609

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
            R GR+ EAY   +++  K+  I W +L+S  +       A QV  R+   +
Sbjct: 610 ARCGRIQEAYLAFEKIGDKNN-ISWNSLVSGLAQSGYFEEALQVFVRMLRTE 660



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 172/344 (50%), Gaps = 5/344 (1%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           +FD      +  +N M   +   K+  +   LF  +L  G+ P+ Y+F  +LKAC  VG 
Sbjct: 115 VFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKAC--VGG 172

Query: 138 E-ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
           + A    KQ+H      G +S+  V   LI+LY++   +E+A+++F  I    +V++ A+
Sbjct: 173 DIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAM 232

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           I+  +++    EA+ LF ++    + PT   + S LS+   +   +LG+ +H  + K+G 
Sbjct: 233 ISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGF 292

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
                V   L+ ++++  +L  A  +F  M+ +D  +++++I      G   +++ +F +
Sbjct: 293 HSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTK 352

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M +  + PD IT   LL AC+  G + +G    +S   K G+   I   G ++DL  +  
Sbjct: 353 MQRDCLKPDCITVASLLSACASVGALHKGMQ-LHSHAIKAGMSADIILEGSLLDLYSKCA 411

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
            ++ A++F      ++  +LW  +L +    +NL  + ++  ++
Sbjct: 412 DVETAHKFFLTTETENI-VLWNVMLVAYGQLDNLSDSFEIFRQM 454



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 91/211 (43%), Gaps = 10/211 (4%)

Query: 210 LSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDM 269
           + L   ++ER ++      L  L  C   GSL     +H  I K G D    +  +L+D 
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 270 HAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITF 329
           + + G    AV VFD  S +   +W+ MI  +       +   +F  M+   ++P+  TF
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 330 LGLLYACSHTGLVDEGWNYFYSMRDK---YGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
            G+L AC      D  +NY   +  +   YG          ++DL  + G ++ A +  +
Sbjct: 163 AGVLKACVGG---DIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFN 219

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
            + +K   + W  ++S  S +   GL ++ I
Sbjct: 220 CICMKDI-VTWVAMISGLSQN---GLEEEAI 246


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  353 bits (907), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 188/511 (36%), Positives = 291/511 (56%), Gaps = 39/511 (7%)

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLL-PDDYSFPSLLKACACVGAEALEE 142
           EP+++ +N +  G +RS     A+     +   GLL PD       L A   VG  ++  
Sbjct: 118 EPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSV-- 175

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G+QLH +A+K G  ++  V T LI++Y +C       R+F+  S   V S NA+I   +R
Sbjct: 176 GQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSR 235

Query: 203 SSRPNEALSLF-----------------------------------RELQERNLKPTDVT 227
           +++  EAL LF                                   RE+Q +  +P  VT
Sbjct: 236 NAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVT 295

Query: 228 MLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS 287
           +   L + A + +L  G+  H +  + G    V V++AL+DM+AKCGR+ DA  +FD M 
Sbjct: 296 IPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMV 355

Query: 288 GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN 347
            ++  +W+AMI  YA +G+   ++ MF  M+K +  PD +TF  LL AC+  GL +EG +
Sbjct: 356 SRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRH 415

Query: 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
           YF  M ++YG+ P ++HY CMV LLGRAG+LDEAY  I ++P +    +W +LL SC  H
Sbjct: 416 YFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVH 475

Query: 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSS 467
            N+ LA+   E++F L+  + G+YV+LSN+ A    W+ V+ +R++MKD G+ K  GCS 
Sbjct: 476 GNVDLAEVAAEKLFHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSW 535

Query: 468 IEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIAL 527
           IE+ N V    +GD  H   T + + +++L  +++ +G+VP T  V H D+E++EK+  L
Sbjct: 536 IEIKNKVHMLLAGDDSHPMMTAIIEKINQLNIQMRKLGFVPSTDFVLH-DVEEQEKDDIL 594

Query: 528 RYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             HSEKLA+  GL++T PGTT+RV+KNLR+C
Sbjct: 595 AVHSEKLAVALGLISTSPGTTLRVIKNLRIC 625



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 136/304 (44%), Gaps = 38/304 (12%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +Q+H   +K   + D  V+T LI+   +    + +     +FD     D+   N +  G 
Sbjct: 177 QQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVR---VFDESSHMDVASCNALIAGL 233

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE------------------- 138
           SR+     A+ LF E ++ G+  +  S+ S++  C   G +                   
Sbjct: 234 SRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNS 293

Query: 139 --------------ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
                         AL  G+  HCFA++ G   ++YV + L+++YA+C  V+ AR IF+ 
Sbjct: 294 VTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDT 353

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
           +    VVS+NA+I  YA       A+ +F  + +   KP  VT    L++C   G  + G
Sbjct: 354 MVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEG 413

Query: 245 K-WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYA 302
           + +  E   +YG+   ++    ++ +  + G+LD+A  +  +M  + D   W +++ +  
Sbjct: 414 RHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCR 473

Query: 303 THGQ 306
            HG 
Sbjct: 474 VHGN 477



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 119/275 (43%), Gaps = 44/275 (16%)

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLY---------- 169
           PD +  P+  K+C       L   + LH  A   GL  + +V ++L++ Y          
Sbjct: 18  PDPHLLPTAFKSC-----PTLPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNAR 72

Query: 170 -----------------------AECSDVEAARRIFENIS-----EPCVVSYNAIITAYA 201
                                  A   D E A R+ E +      EP V+++N +++   
Sbjct: 73  ALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLN 132

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLS-ALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
           RS R  +A+     +    L   D T +S ALS+   +G + +G+ +H Y  K G     
Sbjct: 133 RSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADA 192

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            V TALIDM+ KCG+  + V VFD  S  D  + +A+I   + + Q  +++ +F+E +  
Sbjct: 193 CVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDR 252

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355
            V  + +++  ++  C   G   E   +F  M+ +
Sbjct: 253 GVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQ 287



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 94/230 (40%), Gaps = 44/230 (19%)

Query: 22  PNALSL---LPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PN++++   LP   +   L   +  H   ++    +D+ V + L++   +      ++ A
Sbjct: 291 PNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAK---CGRVKDA 347

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
            ++FD +   ++V +N M  GY+     + A+++F  +L     PD  +F  LL AC   
Sbjct: 348 RIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQA 407

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
           G    EEG+  H F               + N Y                  P +  Y  
Sbjct: 408 GLT--EEGR--HYF-------------KEMHNEYG---------------VSPRMEHYAC 435

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245
           ++T   R+ + +EA  L  ++     +P      S L SC + G++DL +
Sbjct: 436 MVTLLGRAGKLDEAYDLISDMP---FEPDAYIWGSLLGSCRVHGNVDLAE 482


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 190/532 (35%), Positives = 306/532 (57%), Gaps = 7/532 (1%)

Query: 28  LPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDI 87
           +  CTS      IHA  IK+   +D  +  +L++   +       E A  LFD +P  D+
Sbjct: 129 ISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFK---LGYDEDAQRLFDEMPNKDL 185

Query: 88  VLFNTMARGYSRSKTPIRAIFLFVEL-LNSGLLPDDYSFPSLLKACACVGAEALEEGKQL 146
           V +N++  G S        +  F  +   SG  P++ +  S++ ACA +GA  L+EGK L
Sbjct: 186 VSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGA--LDEGKSL 243

Query: 147 HCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRP 206
           H   +KLG++    V  +LIN+Y +   ++AA ++FE +    +VS+N+++  +  +   
Sbjct: 244 HGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYA 303

Query: 207 NEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
            + + LF  ++   + P   TM++ L +C   G     + IH YI + G +  + + TAL
Sbjct: 304 EKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATAL 363

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           ++++AK GRL+ +  +F+ +  +D  AW+AM+  YA H  G ++I +F+ M+K  V  D 
Sbjct: 364 LNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDH 423

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
           +TF  LL ACSH+GLV+EG  YF  M + Y + P + HY CMVDLLGR+GRL++AY  I 
Sbjct: 424 VTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIK 483

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWED 446
            +P++ +  +W  LL +C  + N+ L K+V E++  LD S   +Y++LSN+ + AG W D
Sbjct: 484 SMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRD 543

Query: 447 VDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGY 506
              +R LMK+R + + PGCS IE  N +  F  GD +H  S ++   L+EL+++++  G 
Sbjct: 544 ASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGC 603

Query: 507 VPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            P T  V H D+++E K   +  HSEKLAI FGLL T  G  + + KNLR+C
Sbjct: 604 APKTEFVLH-DIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRIC 654


>gi|356565103|ref|XP_003550784.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g47530-like [Glycine max]
          Length = 515

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 188/475 (39%), Positives = 287/475 (60%), Gaps = 4/475 (0%)

Query: 87  IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQL 146
           +  +NTM R  S S +P + + L+ ++   G+  D  S   ++K+C  +    L  G Q+
Sbjct: 2   VSYYNTMIRACSMSDSPQKGLLLYRDMRRRGIAADPLSSSFVVKSCIRLXGLYLLGGVQV 61

Query: 147 HCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRP 206
           HC   K G   +  + T +++LY+ C     A ++F+ +     V++N +I+   R++R 
Sbjct: 62  HCNIFKYGHQWDTLLLTAVMDLYSXCQRGGDACKVFDEMPPRDTVAWNVMISCCIRNNRT 121

Query: 207 NEALSLFRELQERNLK--PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
            +ALSLF  LQ  + K  P DVT L  L +CA L +L+ G+ IH Y+ ++G    + ++ 
Sbjct: 122 RDALSLFDVLQNSSYKCEPDDVTCLLLLQACAHLYALEFGERIHGYMMEHGYGGALNLSN 181

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
           ALI M+++CG LD A  VF     K+  +WSAMI   A +G G ++I  FEEM++  + P
Sbjct: 182 ALISMYSRCGCLDKAXEVFKGTGNKNVVSWSAMISGLAMNGYGREAIESFEEMLRIGIRP 241

Query: 325 DEITFLGLLYACSHTGLVDEGW-NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
           D+ T  G+L ACS++G+VDEG  ++F  M  ++G+ P + HYGCMVDLLG AG LD+A +
Sbjct: 242 DDQTLTGVLSACSYSGMVDEGMMSFFDRMSREFGVTPNVHHYGCMVDLLGHAGLLDKAXQ 301

Query: 384 FIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443
            I  +  K     WRTLL +C  H ++ L ++VI  + EL     GD+V+L N+ + AG 
Sbjct: 302 LIMSMVEKPDSTTWRTLLGACRIHGHVTLGERVIGHLIELKAQEAGDHVLLLNIYSSAGH 361

Query: 444 WEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKM 503
           WE V  +RKLMK++ +   PGCS+IE+  VV EF   D  H+ + ++ + LDE+  +L++
Sbjct: 362 WEKVAEVRKLMKNKSIQTTPGCSTIELKGVVHEFVVDDVSHTRNHEIYETLDEINHQLRI 421

Query: 504 VGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            GYV + S   H  M+D+EK   L +HSEKLAI FG+L TPPGTT+RV  NLR+C
Sbjct: 422 AGYVVELSSELH-KMDDKEKGYVLSHHSEKLAIAFGVLATPPGTTLRVANNLRIC 475



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 147/314 (46%), Gaps = 14/314 (4%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           Q+H    K   Q D  +LT +++  +          A  +FD +P  D V +N M     
Sbjct: 60  QVHCNIFKYGHQWDTLLLTAVMDLYSXCQRGGD---ACKVFDEMPPRDTVAWNVMISCCI 116

Query: 99  RSKTPIRAIFLFVELLNSGLL--PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           R+     A+ LF  L NS     PDD +   LL+ACA +   ALE G+++H + ++ G  
Sbjct: 117 RNNRTRDALSLFDVLQNSSYKCEPDDVTCLLLLQACAHL--YALEFGERIHGYMMEHGYG 174

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
             L +   LI++Y+ C  ++ A  +F+      VVS++A+I+  A +    EA+  F E+
Sbjct: 175 GALNLSNALISMYSRCGCLDKAXEVFKGTGNKNVVSWSAMISGLAMNGYGREAIESFEEM 234

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLG--KWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
               ++P D T+   LS+C+  G +D G   +     +++G+   V     ++D+    G
Sbjct: 235 LRIGIRPDDQTLTGVLSACSYSGMVDEGMMSFFDRMSREFGVTPNVHHYGCMVDLLGHAG 294

Query: 275 RLDDAVSVFDNMSGK-DTQAWSAMIVAYATHGQ---GHKSILMFEEMMKAQVSPDEITFL 330
            LD A  +  +M  K D+  W  ++ A   HG    G + I    E +KAQ + D +  L
Sbjct: 295 LLDKAXQLIMSMVEKPDSTTWRTLLGACRIHGHVTLGERVIGHLIE-LKAQEAGDHVLLL 353

Query: 331 GLLYACSHTGLVDE 344
            +  +  H   V E
Sbjct: 354 NIYSSAGHWEKVAE 367


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 203/545 (37%), Positives = 306/545 (56%), Gaps = 16/545 (2%)

Query: 20  NTPNALSLLPRCTSFRGL---KQIHAVTIKTHL--QNDL-NVLTKLINFCTQNPTTSSME 73
           ++   LS+LP C     L   + +H  ++KT    Q  L NVL  + + C+   +T+   
Sbjct: 296 DSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNK-- 353

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
               +F  + + ++V +  M   Y+R+    +   LF E+   G  PD ++  S L A A
Sbjct: 354 ----IFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFA 409

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
             G E L+ GK +H +AI+ G+   L V   L+ +Y +C ++E A+ IF+ +    ++S+
Sbjct: 410 --GNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISW 467

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           N +I  Y+R++  NEA SLF E+  + L+P  VTM   L + A L SL+ G+ +H Y  +
Sbjct: 468 NTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAAASLSSLERGREMHAYALR 526

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
            G  +   V  ALIDM+ KCG L  A  +FD +S K+  +W+ M+  Y  HG+G  +I +
Sbjct: 527 RGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIAL 586

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           FE+M  + ++PD  +F  +LYACSH+GL DEGW +F +MR ++ I P +KHY CMVDLL 
Sbjct: 587 FEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLI 646

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI 433
             G L EAY FID +PI+    +W +LL  C  H N+ LA++V ER+FEL+  + G YV+
Sbjct: 647 NTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVL 706

Query: 434 LSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKA 493
           L+N+ A A RWE V  L+  +  RG+ +  GCS IE    V  F + +  H   T + + 
Sbjct: 707 LANIYAEAERWEAVRKLKNKIGGRGLRENTGCSWIEAKGKVHVFIADNRNHPQGTRIAEF 766

Query: 494 LDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVK 553
           L+E+ K ++  G+ P       G       E AL  HS KLA+ FG+LN   G  IRV K
Sbjct: 767 LNEVAKRMQEEGHDPKKKYALMGADNAVHGE-ALCGHSSKLAVAFGVLNLSEGRLIRVTK 825

Query: 554 NLRVC 558
           N RVC
Sbjct: 826 NSRVC 830



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 182/388 (46%), Gaps = 11/388 (2%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDL--NVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           L L     S  G K+ H +   + L  D   NVL +             +E+A  +FD +
Sbjct: 98  LQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQ--KLVLMYLKCGDLENARRVFDEM 155

Query: 83  PE-PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           P+  D+ ++  +  GY+++      + LF ++   G+ PD Y+   +LK  A +G+  +E
Sbjct: 156 PQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGS--IE 213

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           +G+ +H    KLG  S   V   L+  YA+ +  + A  +F+ +    V+S+N++I+   
Sbjct: 214 DGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCT 273

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
            +   ++A+ LF  +     +    T+LS L +CA L  L LG+ +H Y  K G      
Sbjct: 274 SNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTS 333

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           +   L+DM++ C        +F NM  K+  +W+AMI +Y   G   K   +F+EM    
Sbjct: 334 LANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEG 393

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
             PD       L+A +   L+  G + + Y++R+    V  + +   ++++  + G ++E
Sbjct: 394 TRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTN--ALMEMYVKCGNMEE 451

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHN 408
           A    D +  K   I W TL+   S +N
Sbjct: 452 AKLIFDGVVSKDM-ISWNTLIGGYSRNN 478


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 204/557 (36%), Positives = 324/557 (58%), Gaps = 13/557 (2%)

Query: 8   PITQSPPPKLCTNTPNALSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCT 64
           P   SP P    N  N  ++L  C   R ++   Q+HA  + + L  D  + T+L++   
Sbjct: 51  PAFLSPCP-YPYNHNNYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYA 109

Query: 65  QNPTTSSMEHAHLLFDRIP-EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLL-PDD 122
                S    A  LFD +P + ++ L+N + R Y+R      AI L+ E+L  G + PD+
Sbjct: 110 SCGLVSV---ARRLFDEMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDN 166

Query: 123 YSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF 182
           +++P +LKACA +    L  G+++H   ++    ++++VC  LI++YA+C  V+ A  +F
Sbjct: 167 FTYPPVLKACAAL--LDLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVF 224

Query: 183 ENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242
           ++ +    V +N++I A  ++ RP EAL+L R +    + PT VT++SA+S+ A  G+L 
Sbjct: 225 DSTTVRDAVVWNSMIAACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALP 284

Query: 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYA 302
            G+ +H Y  + G     K+ T+L+DM+AK G +  A  +FD +  ++  +W+AMI  + 
Sbjct: 285 RGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFG 344

Query: 303 THGQGHKSILMFEEMM-KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG 361
            HG    +  +F  M  +AQV PD ITF+G+L AC+H G+V E    F  M   Y I P 
Sbjct: 345 MHGHADHACELFRRMRNEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPM 404

Query: 362 IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421
           ++HY C+VD+LG +GR  EA   I  + +K    +W  LL+ C  H N+ LA+  + ++ 
Sbjct: 405 VQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHKLI 464

Query: 422 ELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGD 481
           EL+    G+YV+LSN+ A++G+WE+   +RKLM +RG+ K+  CS IE+      F  GD
Sbjct: 465 ELEPEDAGNYVLLSNIYAQSGKWEEAARVRKLMTNRGLKKIIACSWIELKGKSHGFLVGD 524

Query: 482 GVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLL 541
             H  S ++ + L+ L   +   GYVPDT+ V H ++ED+EK   +R HSE+LAI FGL+
Sbjct: 525 ASHPRSDEIYEELERLEGLISQTGYVPDTTSVFH-NVEDDEKRNMVRGHSERLAIAFGLI 583

Query: 542 NTPPGTTIRVVKNLRVC 558
           +TPPGT + V KNLRVC
Sbjct: 584 STPPGTKLLVTKNLRVC 600


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 199/522 (38%), Positives = 307/522 (58%), Gaps = 8/522 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K+IHA  IK    +++ V   LI+   +      M +    FD +   D++ + T A GY
Sbjct: 281 KEIHAYAIKNGFDSNILVGNTLIDMYAK---CCCMSYGGRAFDLMAHKDLISWTTAAAGY 337

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           +++K  ++A+ L  +L   G+  D     S+L AC   G   L + K++H + I+ GL S
Sbjct: 338 AQNKCYLQALELLRQLQMEGMDVDATMIGSILLACR--GLNCLGKIKEIHGYTIRGGL-S 394

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           +  +  T+I++Y EC  ++ A RIFE+I    VVS+ ++I+ Y  +   N+AL +F  ++
Sbjct: 395 DPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMK 454

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           E  L+P  VT++S LS+   L +L  GK IH +I + G      ++  L+DM+A+CG ++
Sbjct: 455 ETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVE 514

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           DA  +F     ++   W+AMI AY  HG G  ++ +F  M   ++ PD ITFL LLYACS
Sbjct: 515 DAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACS 574

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H+GLV+EG ++   M+ +Y + P  +HY C+VDLLGR   L+EAY+ +  +  + TP +W
Sbjct: 575 HSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVW 634

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             LL +C  H+N  + +   E++ ELD  + G+YV++SN+ A  GRW+DV+ +R  MK  
Sbjct: 635 CALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGS 694

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMV-GYVPDTSLVHHG 516
           G+ K PGCS IEV N +  F S D +H     + + L ++ ++LK   GYV  T  V H 
Sbjct: 695 GLTKNPGCSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLH- 753

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           ++ +EEK   L  HSE+LAI +GLL T  GT IRV KNLRVC
Sbjct: 754 NVGEEEKVQMLYGHSERLAIAYGLLATAEGTPIRVTKNLRVC 795



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 89/277 (32%), Positives = 155/277 (55%), Gaps = 3/277 (1%)

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
            S+  A ++FD++ E  I  +N M  GY  +   + A+ ++ E+ + G+  D Y+FP LL
Sbjct: 6   GSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLL 65

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI-SEP 188
           KAC  V  E L  G ++H  AIK G +S ++V  +L+ LYA+C+D+  AR++F+ +    
Sbjct: 66  KACGIV--EDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRN 123

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
            VVS+N+II+AY+ +    EAL LF E+ +  +     T  +AL +C     + LG  IH
Sbjct: 124 DVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIH 183

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
             I K G    V V  AL+ M+ + G++ +A  +F N+ GKD   W++M+  +  +G   
Sbjct: 184 AAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYS 243

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
           +++  F ++  A + PD+++ + ++ A    G +  G
Sbjct: 244 EALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNG 280



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/412 (27%), Positives = 202/412 (49%), Gaps = 27/412 (6%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI-PEPDIVLFNTMARGY 97
           +IH + IK    + + V+  L+    +    + +  A  LFDR+    D+V +N++   Y
Sbjct: 79  EIHGLAIKYGCDSFVFVVNSLVALYAK---CNDINGARKLFDRMYVRNDVVSWNSIISAY 135

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           S +     A+ LF E+L +G++ + Y+F + L+AC    +  ++ G Q+H   +K G   
Sbjct: 136 SGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACE--DSSFIKLGMQIHAAILKSGRVL 193

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           ++YV   L+ +Y     +  A  IF N+    +V++N+++T + ++   +EAL  F +LQ
Sbjct: 194 DVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQ 253

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
             +LKP  V+++S + +   LG L  GK IH Y  K G D  + V   LIDM+AKC  + 
Sbjct: 254 NADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMS 313

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
                FD M+ KD  +W+     YA +    +++ +  ++    +  D      +L AC 
Sbjct: 314 YGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLAC- 372

Query: 338 HTGLVDEGWNYFYSMRDKYG--IVPGIKH---YGCMVDLLGRAGRLDEAYRFIDELPIKS 392
                  G N    +++ +G  I  G+        ++D+ G  G +D A R  + +  K 
Sbjct: 373 ------RGLNCLGKIKEIHGYTIRGGLSDPVLQNTIIDVYGECGIIDYAVRIFESIECKD 426

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH-GGDYV----ILSNLCA 439
             + W +++ SC  HN  GLA + +E    + ++    DYV    ILS +C+
Sbjct: 427 V-VSWTSMI-SCYVHN--GLANKALEVFSSMKETGLEPDYVTLVSILSAVCS 474



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 129/260 (49%), Gaps = 6/260 (2%)

Query: 168 LYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT 227
           +Y +C  V  A  IF+ +SE  + ++NA++  Y  +     AL ++RE++   +     T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 228 MLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS 287
               L +C ++  L  G  IH    KYG D +V V  +L+ ++AKC  ++ A  +FD M 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 288 GK-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
            + D  +W+++I AY+ +G   +++ +F EM+KA V  +  TF   L AC  +  +  G 
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
               ++  K G V  +     +V +  R G++ EA      L  K   + W ++L+    
Sbjct: 181 QIHAAIL-KSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDI-VTWNSMLTGFIQ 238

Query: 407 HNNLGLAKQVIERIFELDDS 426
           +   GL  + +E  ++L ++
Sbjct: 239 N---GLYSEALEFFYDLQNA 255


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 180/482 (37%), Positives = 282/482 (58%), Gaps = 5/482 (1%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           LFD +PE D V +N +   Y+ ++     + LF E+   G       + ++L     +  
Sbjct: 491 LFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSL-- 548

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
             +  GKQ+H   + LGL S   +   LI++Y++C  ++AA+  F N SE   +S+ A+I
Sbjct: 549 PDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALI 608

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
           T Y ++ +  EAL LF +++   L+P   T  S + + + L  + LG+ +H Y+ + G  
Sbjct: 609 TGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYK 668

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
             V   + L+DM+AKCG LD+A+  FD M  +++ +W+A+I AYA +G+   +I MFE M
Sbjct: 669 SSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGM 728

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
           +    +PD +TFL +L ACSH GL DE   YF+ M+ +Y I P  +HY C++D LGR G 
Sbjct: 729 LHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGC 788

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437
             +  + + E+P K+ PI+W ++L SC  H N  LA+   +++F ++ +    YVILSN+
Sbjct: 789 FSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNI 848

Query: 438 CARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDEL 497
            ARAG+WED   ++K+M+DRGV K  G S +E+   +  F S D       +++  LD L
Sbjct: 849 YARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRL 908

Query: 498 VKELKMVGYVPDTSLVHHGDMEDEEKEI-ALRYHSEKLAITFGLLNTPPGTTIRVVKNLR 556
            KE+   GY PD +   H  M D E ++ +L+YHSE+LAI F L+NTP GT IR++KNL 
Sbjct: 909 YKEMDKQGYKPDITCALH--MVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLT 966

Query: 557 VC 558
            C
Sbjct: 967 AC 968



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 114/396 (28%), Positives = 188/396 (47%), Gaps = 33/396 (8%)

Query: 28  LPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPD 86
           LP CT    +  +H   IK  L   + V   L++ +C      +    A  +F  + + D
Sbjct: 363 LPGCT----VPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAA----ARRVFLEMHDKD 414

Query: 87  IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQL 146
            V +N M  G S+     +A+ LF  +  +G     YS               L   +  
Sbjct: 415 AVTYNAMMMGCSKEGLHTQALQLFAAMRRAG-----YS------------RHPLHLLQYS 457

Query: 147 HCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRP 206
           H  +    +  N++V  +L++ Y++C  ++  RR+F+ + E   VSYN II AYA +   
Sbjct: 458 HSRSRSTSV-LNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCA 516

Query: 207 NEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
              L LFRE+Q+       +   + LS    L  + +GK IH  +   GL     +  AL
Sbjct: 517 ATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNAL 576

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           IDM++KCG LD A S F N S K   +W+A+I  Y  +GQ  +++ +F +M +A + PD 
Sbjct: 577 IDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDR 636

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
            TF  ++ A S   ++  G    +S   + G    +     +VD+  + G LDEA R  D
Sbjct: 637 ATFSSIIKASSSLAMIGLG-RQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFD 695

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
           E+P +++ I W  ++   S++ + G AK  I ++FE
Sbjct: 696 EMPERNS-ISWNAVI---SAYAHYGEAKNAI-KMFE 726



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 149/350 (42%), Gaps = 63/350 (18%)

Query: 2   ATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLIN 61
            TT   P T S  P      P A  ++P       LKQ  +      +    +VLT  +N
Sbjct: 210 GTTMPVPATPSTSPPWKEYAPAAPGVVP-------LKQPSSQAAPAGVTG-FDVLTYRLN 261

Query: 62  FCTQNPTTSSMEH-AHLLFDRIPEPDIVLFNTMARGYSRS-----------KTPIR---- 105
              ++  +S   H A  +FD++P  +I   N +   YS S            +P R    
Sbjct: 262 LGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATT 321

Query: 106 ----------------AIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCF 149
                           A+ LF  +L  G++PD  +  ++L    C           LH F
Sbjct: 322 WTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTV-------PSLHPF 374

Query: 150 AIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEA 209
           AIK GL+++++VC TL++ Y +   + AARR+F  + +   V+YNA++   ++     +A
Sbjct: 375 AIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQA 434

Query: 210 LSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDM 269
           L LF  ++        + +L               ++ H   +   +   V VN +L+D 
Sbjct: 435 LQLFAAMRRAGYSRHPLHLL---------------QYSHSRSRSTSVLN-VFVNNSLLDF 478

Query: 270 HAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           ++KC  LDD   +FD M  +D  +++ +I AYA +      + +F EM K
Sbjct: 479 YSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQK 528



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 108/236 (45%), Gaps = 26/236 (11%)

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
           + N++    +++ Y+   D+ AA+ +F +       ++  ++ A+A + R ++ALSLFR 
Sbjct: 285 HKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRA 344

Query: 216 LQERNLKPTDVTMLSALS--SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273
           +    + P  VT+ + L+   C +         +H +  K+GLD +V V   L+D + K 
Sbjct: 345 MLGEGVIPDRVTVTTVLNLPGCTVPS-------LHPFAIKFGLDTHVFVCNTLLDAYCKH 397

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
           G L  A  VF  M  KD   ++AM++  +  G   +++ +F  M +A  S   +  L   
Sbjct: 398 GLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLHLLQYS 457

Query: 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389
           ++ S +  V    N F +                ++D   +   LD+  R  DE+P
Sbjct: 458 HSRSRSTSV---LNVFVN--------------NSLLDFYSKCDCLDDMRRLFDEMP 496



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 3/99 (3%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +Q+H+  I++  ++ +   + L++   +      ++ A   FD +PE + + +N +   Y
Sbjct: 656 RQLHSYLIRSGYKSSVFSGSVLVDMYAK---CGCLDEALRTFDEMPERNSISWNAVISAY 712

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
           +       AI +F  +L+ G  PD  +F S+L AC+  G
Sbjct: 713 AHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNG 751


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 187/539 (34%), Positives = 307/539 (56%), Gaps = 16/539 (2%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDR 81
           + +  C   + L   ++IH     +  + D  +   LI+ +C       S+  AH +FD+
Sbjct: 56  AFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCK----CGSVVEAHKVFDK 111

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           + + D+V + ++  GY+++  P  AI L   +L     P+ ++F SLLKA        + 
Sbjct: 112 MRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGI- 170

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G Q+H  A+K   + ++YV + L+++YA C  ++ A  +F+ +     VS+NA+I+ +A
Sbjct: 171 -GGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFA 229

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           R      AL +F E+Q    + T  T  S  S  A +G+L+ GKW+H ++ K        
Sbjct: 230 RKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAF 289

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V   ++DM+AK G + DA  VF+ +  KD   W++M+ A+A +G G +++  FEEM K+ 
Sbjct: 290 VGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSG 349

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           +  ++ITFL +L ACSH GLV EG +YF  M  +Y + P I+HY  +VDLLGRAG L+ A
Sbjct: 350 IYLNQITFLCILTACSHGGLVKEGKHYF-DMIKEYNLEPEIEHYVTVVDLLGRAGLLNYA 408

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
             FI ++P++ T  +W  LL++C  H N  + +   + +F+LD    G  V+L N+ A  
Sbjct: 409 LVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYAST 468

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           G W+    +RK+MK  GV K P CS +E+ N V  F + D  H  + ++ K  DE+  ++
Sbjct: 469 GHWDAAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYKMWDEISMKI 528

Query: 502 KMVGYVPDTS--LVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +  GYVPD    L+H   ++++E+E  L+YHSEK+A+ F L+  P G TIR++KN+R+C
Sbjct: 529 RKEGYVPDMDYVLLH---VDEQEREANLQYHSEKIALAFALIQMPAGATIRIMKNIRIC 584



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 161/315 (51%), Gaps = 10/315 (3%)

Query: 114 LNSG-LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172
           L+SG L P    + + + ACA   ++ L++ +++H          + ++  +LI+LY +C
Sbjct: 42  LDSGELAPTPRVYHAFITACA--QSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKC 99

Query: 173 SDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232
             V  A ++F+ + +  +VS+ ++I  YA++  P EA+ L   + +   KP   T  S L
Sbjct: 100 GSVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLL 159

Query: 233 SSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ 292
            +        +G  IH    K    + V V +AL+DM+A+CG++D A +VFD +  K+  
Sbjct: 160 KAAGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGV 219

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYS 351
           +W+A+I  +A  G G  ++++F EM +        T+  +    +  G +++G W + + 
Sbjct: 220 SWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHM 279

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
           ++ +  +   + +   M+D+  ++G + +A R + E  +    + W ++L++ + +   G
Sbjct: 280 VKSRQKLTAFVGN--TMLDMYAKSGSMIDA-RKVFERVLNKDLVTWNSMLTAFAQY---G 333

Query: 412 LAKQVIERIFELDDS 426
           L K+ +    E+  S
Sbjct: 334 LGKEAVSHFEEMRKS 348


>gi|225432322|ref|XP_002276230.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Vitis vinifera]
          Length = 606

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 195/558 (34%), Positives = 322/558 (57%), Gaps = 19/558 (3%)

Query: 15  PKLCTNTPNALS-------LLPR---CTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCT 64
           P  C +  N LS       L+ R   C     +   H   +K+   ND      LIN   
Sbjct: 14  PSTCISRQNKLSHFHTKTQLIQRLQDCNDITSVSFSHTNVLKSGFLNDTFTTNHLINSYV 73

Query: 65  QNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYS 124
           +   T+    A  LF+ + EP+++ F ++  G+ +   P  A+ +F ++L S +LP+ ++
Sbjct: 74  RIRRTND---ASQLFEEMREPNVISFTSLMAGFIKVGRPKSALLIFCKMLESWVLPNAFT 130

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
           F +++ AC+ +    L  G+++H      G+  NL VC++LI++Y +C++V+ ARR+F+ 
Sbjct: 131 FATVVNACSMLAD--LRTGQKIHSHVEMFGVQCNLVVCSSLIDMYGKCNNVDDARRVFDG 188

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK-PTDVTMLSALSSCALLGSLDL 243
           +    VVS+ ++ITAY +++    AL LFRE     L  P    + S +++CA LG L  
Sbjct: 189 MDYRNVVSWTSMITAYGQNALGECALQLFREFNGLPLSSPNHFMLASVINACASLGRLVS 248

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303
           GK  H  + + G +    V +AL+DM+AKCG +  +  VF  +       +++MIV  A 
Sbjct: 249 GKVAHAAVIRRGHESNDVVASALVDMYAKCGCIGYSDKVFRRIPDPSVIPYTSMIVGAAK 308

Query: 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK 363
           +G G  S+ +F+EM+  ++ P+++TF+G+L+ACSH+GLVD+G  Y +SM  K+G+VP  K
Sbjct: 309 YGLGKFSLDIFKEMLDRRIKPNDVTFVGVLHACSHSGLVDDGLEYLHSMHKKHGVVPDTK 368

Query: 364 HYGCMVDLLGRAGRLDEAYRFIDELPIK--STPILWRTLLSSCSSHNNLGLAKQVIERIF 421
           HY C+VD+LGR GRLDEA++    + ++     +LW TLLS+   +  + +A +  + + 
Sbjct: 369 HYTCVVDMLGRTGRLDEAHQLAKSIQVEPDQGALLWGTLLSASRLYGRVDIAVEASKWLI 428

Query: 422 ELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGD 481
           E +      YV +SN  A AG+WE+V  +R  MK  GV K PGCS +E+ +    F++GD
Sbjct: 429 ESNQQVAAAYVTMSNTYAMAGKWENVHSIRYEMKHYGVYKEPGCSWVEIRDSAYVFYAGD 488

Query: 482 -GVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGL 540
             + +  +++   L EL + +K  GYV  +  +   D+E+E KE  +  HSE+LA+ FGL
Sbjct: 489 VSLCARGSEVASLLRELERRMKERGYVGGSRGLVSIDVEEEAKEEIVGLHSERLALAFGL 548

Query: 541 LNTPPGTTIRVVKNLRVC 558
           ++ P G TIRV+KNLR+C
Sbjct: 549 ISIPKGVTIRVMKNLRMC 566


>gi|224141397|ref|XP_002324059.1| predicted protein [Populus trichocarpa]
 gi|222867061|gb|EEF04192.1| predicted protein [Populus trichocarpa]
          Length = 505

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 198/506 (39%), Positives = 310/506 (61%), Gaps = 19/506 (3%)

Query: 8   PITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNP 67
           P T +   KL +   + LSLL   +S + + QIHA  + + LQ D N+LT+LI FC+ +P
Sbjct: 7   PRTVNSNSKLLSKKNHCLSLLKLSSSVKHVSQIHAQILVSGLQQDTNLLTELIRFCSLSP 66

Query: 68  TTSSMEHAHLLF----DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDY 123
           +   + +AH L     D +P      +N + RGY+    P  AI +F  +   G+ P+++
Sbjct: 67  S-KHLSYAHSLLYNSLDSLPP-----WNFLIRGYASGDAPKNAIRVFHRMRKEGVGPNNF 120

Query: 124 SFPSLLKACA-CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF 182
           +FP +LKACA C+   ALEEGKQ+H    K GL+ ++YV   L++LY  C  +  A ++F
Sbjct: 121 TFPFVLKACATCL---ALEEGKQVHADIFKFGLDCDVYVNNNLVHLYGSCKRIWDACKVF 177

Query: 183 ENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242
           + +    +VS+N++ITA  ++    +A+  F ++++   +P + TM+  LS CA +G+L 
Sbjct: 178 DEMPVRSIVSWNSVITACVQNLWLGDAIWNFVKMKDFGFEPNETTMVIMLSLCAQIGNLS 237

Query: 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYA 302
           LG+WIH  + + G+    ++ TAL+DM+AK G L  A  VFD M  K+   WSAMI+  A
Sbjct: 238 LGRWIHSQVIERGMTLNCQLGTALVDMYAKSGDLGYAKLVFDRMEKKNVWTWSAMILGLA 297

Query: 303 THGQGHKSILMFEEMMKA-QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG 361
            HG G + + +F +M ++  + P+ +TFLG+L ACSH GLVDEG+ YFY M  ++GI P 
Sbjct: 298 QHGFGKEGLELFLKMKESVSICPNYVTFLGVLCACSHAGLVDEGFRYFYEMEHRHGIRPM 357

Query: 362 IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN---NLGLAKQVIE 418
           + HYG MVD+LGRAG L+EAY F+ ++P +  PILWRTLLS+C+ HN   + GL  +V +
Sbjct: 358 VIHYGAMVDILGRAGNLEEAYNFLMDVPFQPDPILWRTLLSACNIHNANVSDGLVDKVRK 417

Query: 419 RIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFF 478
           ++ EL+     ++VI++N+ A AG WE    +R+ M+D G+ K+ G S I +   + +FF
Sbjct: 418 KLLELEPRRSENFVIIANMYADAGMWETATNVRRTMRDGGLKKIGGESCIVLEGSIHQFF 477

Query: 479 SGDGVHSYSTDLQKALDELVKELKMV 504
           SG     + + ++  LD L   +KMV
Sbjct: 478 SGCSKDDHES-IELLLDGLNLNMKMV 502


>gi|359488917|ref|XP_002283393.2| PREDICTED: ATP-dependent zinc metalloprotease FTSH 6,
            chloroplastic-like [Vitis vinifera]
          Length = 1146

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 180/492 (36%), Positives = 292/492 (59%), Gaps = 15/492 (3%)

Query: 16   KLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
            K+       LSLL  C+S + L QI              +   L+ FC  +P   ++ HA
Sbjct: 664  KMNVKPQQCLSLLNLCSSMKHLFQIRGHGF---------IAGPLLRFCASSPL-GNLNHA 713

Query: 76   HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
             +L     + ++  +N + R Y+   +P  AI  ++E+ + G+ PD  +FP LLKACA +
Sbjct: 714  RVLLSGSEKSEVSSWNDLIRSYATRDSPREAIGAYLEMRSLGISPDKLTFPILLKACAAI 773

Query: 136  GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
               A  EG+++    +K GL+ N+YV  T+I+ Y  C  +  ARR+F+ +S   VVS+NA
Sbjct: 774  --SAFNEGRKIQVDVMKHGLDCNVYVQNTMIHFYGSCKRIRDARRMFDEMSYRTVVSWNA 831

Query: 196  IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
            +++A   +   N++  LF +++     P + TM+  LS+C+ LG+L  G+W+H  + + G
Sbjct: 832  VLSACVDNEWLNDSFGLFVKMRGSGFDPDETTMVILLSACSELGNLSFGRWVHSQVIEKG 891

Query: 256  LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
            +    ++ TAL+DM+AKCG + +A  VF  M  ++   WSAMI+  A HG   +++ +F 
Sbjct: 892  MVVNCRLGTALVDMYAKCGAVCEASLVFHRMLERNVWTWSAMILGLAQHGFAKEALELFP 951

Query: 316  EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
            +M ++ +SP+ +TFLG+L ACSH GLVD+G+ +F+ M   +GI P + HYG MVD+L RA
Sbjct: 952  KMKQSSISPNYVTFLGVLCACSHAGLVDDGYRFFHDMEYVHGIEPMMIHYGAMVDILSRA 1011

Query: 376  GRLDEAYRFIDELPIKSTPILWRTLLSSCSSH---NNLGLAKQVIERIFELDDSHGGDYV 432
            GRL EAY FI  +P+++ P++WRTLLS+C+ H   +N G+  +V +R+ EL+    G++V
Sbjct: 1012 GRLKEAYNFILNMPVEADPVVWRTLLSACTIHGINDNDGVGDKVRKRLLELEPRRSGNFV 1071

Query: 433  ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
            +++N+ A  G+W+    +R+ MKD G+ K+ G S IEV   +  FFSGD       D+ +
Sbjct: 1072 MVANMYAEVGKWDKAANVRRTMKDTGLKKMAGESCIEVGGSIHRFFSGDDPQLDCEDVLQ 1131

Query: 493  ALDELVKELKMV 504
             LD L   +K V
Sbjct: 1132 LLDGLNLHMKTV 1143


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 193/521 (37%), Positives = 298/521 (57%), Gaps = 7/521 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +Q+H +  +    N + V   L++F ++      M+    LF  + E D V +N M  GY
Sbjct: 261 RQVHGLVARATSSN-VFVNNSLLDFYSKCDCLDEMKK---LFHEMIERDNVSYNVMIAGY 316

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           + ++     + LF E+ +         + SLL     V    +  GKQ+H   + LGL+S
Sbjct: 317 AWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGI--GKQIHAQLVLLGLSS 374

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
              V   LI++Y++C  ++AA+  F N ++   VS+ A+IT   ++ +  EAL LF  ++
Sbjct: 375 EDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMR 434

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              L P   T  S + + + L  + LG+ +H Y+ + G    V   +AL+DM+ KCG LD
Sbjct: 435 RAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLD 494

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           +A+  FD M  +++ +W+A+I AYA +GQ   +I MFE M+     PD +TFL +L ACS
Sbjct: 495 EALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACS 554

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H GL +E   YF  M  +YGI P  +HY C++D LGR GR D+    + E+P +  PI+W
Sbjct: 555 HNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGRFDKVQEMLGEMPFEDDPIIW 614

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
            ++L SC +H N  LA+   E++F +  +    YVILSN+ A+AG+WED   ++K+M+DR
Sbjct: 615 SSILHSCRTHGNQDLARVAAEKLFSMGSTDATPYVILSNIFAKAGKWEDAAGVKKIMRDR 674

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           G+ K  G S +EV + V  F S D  +   T+++  L+ L KE+   GY PDTS      
Sbjct: 675 GLRKETGYSWVEVKHKVYSFSSNDQTNPMITEIKDELERLYKEMDKQGYKPDTSCTLQ-Q 733

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           ++D+ K  +L+YHSE+LAI F L+NTPPGT IRV+KNL  C
Sbjct: 734 VDDDIKLESLKYHSERLAIAFALINTPPGTPIRVMKNLSAC 774



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 175/378 (46%), Gaps = 20/378 (5%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE--PDIVLFNTMA 94
           L Q  A+  +   +N+   L ++++  +++   S+   AH LF   P    D V +  M 
Sbjct: 50  LAQARALFDQMPHRNNAFSLNRMLSGYSRSGQLSA---AHHLFLSSPPHLRDAVTWTVMI 106

Query: 95  RGYSRS--KTPIRAIFLFVELLNSGLLPDDYSFPSLLK-ACACVGAEALEEGKQLHCFAI 151
             ++ +       A+ LF ++L  G+ PD  +  ++L    A  G  A      LH FA+
Sbjct: 107 GAFASAPGARASDAVSLFRDMLREGVAPDRVTVATVLNLPPASGGTAAAIIIASLHPFAL 166

Query: 152 KLGL-NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEAL 210
           KLGL +SN+ VC TL++ Y +   + AARR+F+ +     V+YNA++   ++     EAL
Sbjct: 167 KLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEAL 226

Query: 211 SLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270
            LF  ++ + L  T  T  + L+    +G L LG+ +H  + +      V VN +L+D +
Sbjct: 227 DLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLVAR-ATSSNVFVNNSLLDFY 285

Query: 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           +KC  LD+   +F  M  +D  +++ MI  YA +      + +F EM         + + 
Sbjct: 286 SKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYA 345

Query: 331 GLLYACS---HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA-YRFID 386
            LL       H G+  +     ++     G+         ++D+  + G LD A   FI+
Sbjct: 346 SLLSVAGSVPHIGIGKQ----IHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFIN 401

Query: 387 ELPIKSTPILWRTLLSSC 404
           +     T + W  +++ C
Sbjct: 402 K--NDKTGVSWTAMITGC 417


>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 516

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 185/509 (36%), Positives = 288/509 (56%), Gaps = 40/509 (7%)

Query: 14  PPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTH-LQNDLNVLTKLINFCTQNPTTSSM 72
           PP    NT    +LL RC++ + L QIH   +K   ++N L V T L+++        ++
Sbjct: 7   PP----NTEQTQALLERCSNMKELMQIHGQLLKKGTIRNQLTVSTLLVSYA--RIELVNL 60

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
            +  ++FD I  P+ V++NTM R YS S  P  A+ L+ ++L++ +  + Y+FP LLKAC
Sbjct: 61  AYTRVVFDSISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKAC 120

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR------------- 179
           + +   A EE +Q+H   IK G    +Y   +L+ +YA   ++++A              
Sbjct: 121 SAL--SAFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVS 178

Query: 180 ------------------RIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNL 221
                             +IF+ + E  V+S+  +I  + R     EALSL +++    +
Sbjct: 179 WNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGI 238

Query: 222 KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVS 281
           KP  +T+  +LS+CA LG+L+ GKWIH YI+K  +     +   L DM+ KCG ++ A+ 
Sbjct: 239 KPDSITLSCSLSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALL 298

Query: 282 VFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341
           VF  +  K   AW+A+I   A HG+G +++  F +M KA ++P+ ITF  +L ACSH GL
Sbjct: 299 VFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGL 358

Query: 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
            +EG + F SM   Y I P ++HYGCMVDL+GRAG L EA  FI+ +P+K    +W  LL
Sbjct: 359 TEEGKSLFESMSSVYNIKPSMEHYGCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGALL 418

Query: 402 SSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLK 461
           ++C  H +  L K++ + + ELD  H G Y+ L+++ A AG W  V  +R  +K RG+L 
Sbjct: 419 NACQLHKHFELGKEIGKILIELDPDHSGRYIHLASIYAAAGEWNQVVRVRSQIKHRGLLN 478

Query: 462 VPGCSSIEVNNVVREFFSGDGVHSYSTDL 490
            PGCSSI +N VV EFF+GDG H +  ++
Sbjct: 479 HPGCSSITLNGVVHEFFAGDGSHPHIQEI 507


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 195/506 (38%), Positives = 284/506 (56%), Gaps = 38/506 (7%)

Query: 88  VLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLH 147
           V +N M  GY        A  L   + + G+  D+Y++ S++ A +  G      G+Q+H
Sbjct: 240 VAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGL--FNIGRQVH 297

Query: 148 CFAIKLGLNSN----LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
            + ++  +  +    L V   LI LY  C  +  ARR+F+ +    +VS+NAI++    +
Sbjct: 298 AYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNA 357

Query: 204 SRPNEALSLFRELQERNL-------------------------------KPTDVTMLSAL 232
            R  EA S+FRE+  R+L                               +P D     A+
Sbjct: 358 RRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAI 417

Query: 233 SSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ 292
           +SC++LGSLD G+ +H  I + G D  + V  ALI M+++CG ++ A +VF  M   D+ 
Sbjct: 418 ASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSV 477

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
           +W+AMI A A HG G ++I ++E+M+K  + PD ITFL +L ACSH GLV EG +YF +M
Sbjct: 478 SWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTM 537

Query: 353 RDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGL 412
           R  YGI P   HY  ++DLL RAG   EA    + +P +    +W  LL+ C  H N+ L
Sbjct: 538 RVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMEL 597

Query: 413 AKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNN 472
             Q  +R+ EL     G Y+ LSN+ A  G+W++V  +RKLM++RGV K PGCS IEV N
Sbjct: 598 GIQAADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVEN 657

Query: 473 VVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSE 532
           +V  F   D VH     + + L++LV E++ +GYVPDT  V H DME E+KE AL  HSE
Sbjct: 658 MVHVFLVDDAVHPEVHAVYRYLEQLVHEMRKLGYVPDTKFVLH-DMESEQKEYALSTHSE 716

Query: 533 KLAITFGLLNTPPGTTIRVVKNLRVC 558
           KLA+ +G++  P G TIRV KNLR+C
Sbjct: 717 KLAVVYGIMKLPLGATIRVFKNLRIC 742



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 111/504 (22%), Positives = 205/504 (40%), Gaps = 120/504 (23%)

Query: 32  TSFRGLKQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPDIVLF 90
           TSF   + +HA  + +  +    ++ +LI+ +C     + ++ +A  LFD+IP+PDIV  
Sbjct: 12  TSFA--RAVHAHILTSGFKPFPLIINRLIDHYCK----SFNIPYARYLFDKIPKPDIVAA 65

Query: 91  NTMARGYSRS-----------KTPIR----------------------AIFLFVELLNSG 117
            TM   YS +            TP+                       A+ LFV++   G
Sbjct: 66  TTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLG 125

Query: 118 LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS---- 173
            +PD ++F S+L A + +  E     +QLHC   K G  S   V   L++ Y  C+    
Sbjct: 126 FVPDPFTFSSVLGALSLIADEE-THCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPL 184

Query: 174 --------------------------------------DVEAARRIFENISEPCVVSYNA 195
                                                 D+ AAR + E +++   V++NA
Sbjct: 185 VNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNA 244

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +I+ Y       EA  L R +    ++  + T  S +S+ +  G  ++G+ +H Y+ +  
Sbjct: 245 MISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTV 304

Query: 256 LDK----YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSA--------------- 296
           +       + VN ALI ++ +CG+L +A  VFD M  KD  +W+A               
Sbjct: 305 VQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEAN 364

Query: 297 ----------------MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG 340
                           MI   A +G G + + +F +M    + P +  + G + +CS  G
Sbjct: 365 SIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLG 424

Query: 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400
            +D G    +S   + G    +     ++ +  R G ++ A      +P   + + W  +
Sbjct: 425 SLDNG-QQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDS-VSWNAM 482

Query: 401 LSSCSSHNNLGLAKQVIERIFELD 424
           +++ + H +   A Q+ E++ + D
Sbjct: 483 IAALAQHGHGVQAIQLYEKMLKED 506



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 165/355 (46%), Gaps = 43/355 (12%)

Query: 38  KQIHAVTIKTHLQND----LNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM 93
           +Q+HA  ++T +Q      L+V   LI   T+      +  A  +FD++P  D+V +N +
Sbjct: 294 RQVHAYVLRTVVQPSGHFVLSVNNALITLYTR---CGKLVEARRVFDKMPVKDLVSWNAI 350

Query: 94  ARGYSRSK-----------TPIRAIF--------------------LFVELLNSGLLPDD 122
             G   ++            P+R++                     LF ++   GL P D
Sbjct: 351 LSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCD 410

Query: 123 YSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF 182
           Y++   + +C+ +G+  L+ G+QLH   I+LG +S+L V   LI +Y+ C  VEAA  +F
Sbjct: 411 YAYAGAIASCSVLGS--LDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVF 468

Query: 183 ENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242
             +     VS+NA+I A A+     +A+ L+ ++ + ++ P  +T L+ LS+C+  G + 
Sbjct: 469 LTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVK 528

Query: 243 LGKWIHEYIKK-YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVA 300
            G+   + ++  YG+       + LID+  + G   +A +V ++M  +     W A++  
Sbjct: 529 EGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAG 588

Query: 301 YATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355
              HG     I   + +++     D  T++ L    +  G  DE       MR++
Sbjct: 589 CWIHGNMELGIQAADRLLELMPQQDG-TYISLSNMYAALGQWDEVARVRKLMRER 642


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 194/537 (36%), Positives = 307/537 (57%), Gaps = 11/537 (2%)

Query: 26   SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
            S+L  C     L+   QIH+  IKT+ Q +  V + LI+   +      ++ A  +  R 
Sbjct: 495  SILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAK---LGKLDTAWDILIRF 551

Query: 83   PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
               D+V + TM  GY++     +A+  F ++L+ G+  D+    + + ACA  G +AL+E
Sbjct: 552  AGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACA--GLQALKE 609

Query: 143  GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
            G+Q+H  A   G +S+L     L+ LY+ C  +E +   FE       +++NA+++ + +
Sbjct: 610  GQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQ 669

Query: 203  SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
            S    EAL +F  +    +   + T  SA+ + +   ++  GK +H  I K G D   +V
Sbjct: 670  SGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEV 729

Query: 263  NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
              ALI M+AKCG + DA   F  +S K+  +W+A+I AY+ HG G +++  F++M+ + V
Sbjct: 730  CNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNV 789

Query: 323  SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
             P+ +T +G+L ACSH GLVD+G  YF SM  +YG+ P  +HY C+VD+L RAG L  A 
Sbjct: 790  RPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAK 849

Query: 383  RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
             FI E+PIK   ++WRTLLS+C  H N+ + +     + EL+      YV+LSNL A + 
Sbjct: 850  EFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSK 909

Query: 443  RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
            +W+  D  R+ MK++GV K PG S IEV N +  F+ GD  H  + ++ +   +L K   
Sbjct: 910  KWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRAS 969

Query: 503  MVGYVPDT-SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             +GYV D  SL++  +++ E+K+  +  HSEKLAI+FGLL+ P    I V+KNLRVC
Sbjct: 970  EIGYVQDCFSLLN--ELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVC 1024



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/404 (29%), Positives = 187/404 (46%), Gaps = 11/404 (2%)

Query: 21  TPNALS-LLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           TP A S +L  C     L+   Q+H + +K    +D  V   L++         S EH  
Sbjct: 287 TPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEH-- 344

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +F  + + D V +NT+  G S+     +A+ LF  +   GL PD  +  SL+ AC+  G
Sbjct: 345 -IFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADG 403

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
              L  G+QLH +  KLG  SN  +   L+NLYA+C+D+E A   F       VV +N +
Sbjct: 404 T--LFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVM 461

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           + AY        +  +FR++Q   + P   T  S L +C  LG L+LG+ IH  I K   
Sbjct: 462 LVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNF 521

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
                V + LIDM+AK G+LD A  +    +GKD  +W+ MI  Y  +    K++  F +
Sbjct: 522 QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQ 581

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M+   +  DE+     + AC+    + EG    ++     G    +     +V L  R G
Sbjct: 582 MLDRGIRSDEVGLTNAVSACAGLQALKEG-QQIHAQACVSGFSSDLPFQNALVTLYSRCG 640

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
           +++E+Y   ++       I W  L+S      N   A +V  R+
Sbjct: 641 KIEESYLAFEQTEAGDN-IAWNALVSGFQQSGNNEEALRVFVRM 683



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 182/365 (49%), Gaps = 8/365 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +++H+  +K  L ++  +  KL +F         +  A  +FD +PE  I  +N M +  
Sbjct: 105 RKLHSQILKLGLDSNGCLSEKLFDFYL---FKGDLYGAFKVFDEMPERTIFTWNKMIKEL 161

Query: 98  SRSKTPIRAIF-LFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           + S+  I  +F LFV +++  + P++ +F  +L+AC   G+ A +  +Q+H   +  GL 
Sbjct: 162 A-SRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG-GSVAFDVVEQIHARILYQGLR 219

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            +  VC  LI+LY+    V+ ARR+F+ +      S+ A+I+  +++    EA+ LF ++
Sbjct: 220 DSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDM 279

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
               + PT     S LS+C  + SL++G+ +H  + K G      V  AL+ ++   G L
Sbjct: 280 YVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNL 339

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
             A  +F NMS +D   ++ +I   +  G G K++ +F+ M    + PD  T   L+ AC
Sbjct: 340 ISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVAC 399

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           S  G +  G    ++   K G     K  G +++L  +   ++ A  +  E  +++  +L
Sbjct: 400 SADGTLFRG-QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENV-VL 457

Query: 397 WRTLL 401
           W  +L
Sbjct: 458 WNVML 462



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 110/224 (49%), Gaps = 4/224 (1%)

Query: 115 NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174
           N G+ P+  +   LL+ C      +L+EG++LH   +KLGL+SN  +   L + Y    D
Sbjct: 77  NRGIRPNHQTLKWLLEGCLKTNG-SLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGD 135

Query: 175 VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSS 234
           +  A ++F+ + E  + ++N +I   A  +   E   LF  +   N+ P + T    L +
Sbjct: 136 LYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEA 195

Query: 235 CALLGSL--DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ 292
           C   GS+  D+ + IH  I   GL     V   LID++++ G +D A  VFD +  KD  
Sbjct: 196 CR-GGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHS 254

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           +W AMI   + +    ++I +F +M    + P    F  +L AC
Sbjct: 255 SWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSAC 298



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 2/193 (1%)

Query: 216 LQERNLKPTDVTMLSALSSCALL-GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
           ++ R ++P   T+   L  C    GSLD G+ +H  I K GLD    ++  L D +   G
Sbjct: 75  VENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKG 134

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
            L  A  VFD M  +    W+ MI   A+     +   +F  M+   V+P+E TF G+L 
Sbjct: 135 DLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLE 194

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           AC    +  +     ++     G+         ++DL  R G +D A R  D L +K   
Sbjct: 195 ACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHS 254

Query: 395 ILWRTLLSSCSSH 407
             W  ++S  S +
Sbjct: 255 S-WVAMISGLSKN 266


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 195/537 (36%), Positives = 298/537 (55%), Gaps = 41/537 (7%)

Query: 59  LINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118
           L++ C +      ++ A L   ++P   + L + + R  SRS  P  A+ L+  LL +GL
Sbjct: 10  LLSRCGEARAIVRIQAALLTSGQLPR-SVELHDALIRALSRSARPHLALPLYAHLLRAGL 68

Query: 119 LPDDYSFPSLLKACACV----GAEALEEGKQLHCFAIKLGLNSNLYVCT----------- 163
           LP  ++ PSLLK+ A      GA  L     +H  A+KLGL+  + V             
Sbjct: 69  LPTPHTLPSLLKSMALSPAVPGAAVL--ALTVHTHAVKLGLDRFVLVSNALIRVHAGFLG 126

Query: 164 ---------------------TLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
                                TLI  YA    +  AR +F+ +     VS++A++  Y +
Sbjct: 127 SLADGLLLLRTAAAVDASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQ 186

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
           +    EAL +F  +Q  +++P D  ++  L++CA  G+L+ GKW+H Y+K +G+   +  
Sbjct: 187 AGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFF 246

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
            TAL+DM++KCG +  A+ VF+ M  K+  AW+ MI   A HG+G +++++F +M  + +
Sbjct: 247 GTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGI 306

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            PD+I F+G+L AC+H GLVD+G   F SM  KYGI P I+HYGCMVDLL R G L EA 
Sbjct: 307 RPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAK 366

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
             I ++P++   ++W  L++ C  H N+  A+ V +    L+    G YV+LSN+ A +G
Sbjct: 367 EMIQKMPMEPDALIWGALMAGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAASG 426

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           R      +R LM+++GV K PGCS++EVN V+ +F  GD  H    D+     E+   ++
Sbjct: 427 RHASAREIRHLMREKGVDKTPGCSTVEVNGVIHQFIVGDLSHPRIKDILSKWYEIDTRIR 486

Query: 503 M-VGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +  GY+PD   V   D+E+EEKE AL  HSEKLAI F L++      IR+ KNLRVC
Sbjct: 487 LEEGYIPDMKEVLL-DIEEEEKEGALSRHSEKLAIAFALISISDNMPIRIFKNLRVC 542



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 129/285 (45%), Gaps = 43/285 (15%)

Query: 166 INLYAECSDVEAARRIFENISEP-----CVVSYNAIITAYARSSRPNEALSLFRELQERN 220
           ++L + C +  A  RI   +         V  ++A+I A +RS+RP+ AL L+  L    
Sbjct: 8   VDLLSRCGEARAIVRIQAALLTSGQLPRSVELHDALIRALSRSARPHLALPLYAHLLRAG 67

Query: 221 LKPTDVTMLSALSSCALL----GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH------ 270
           L PT  T+ S L S AL     G+  L   +H +  K GLD++V V+ ALI +H      
Sbjct: 68  LLPTPHTLPSLLKSMALSPAVPGAAVLALTVHTHAVKLGLDRFVLVSNALIRVHAGFLGS 127

Query: 271 --------------------------AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
                                     A+ GRL DA ++FD M  ++  +WSAM+  Y   
Sbjct: 128 LADGLLLLRTAAAVDASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQA 187

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364
           G G +++ +F  M    V PD+   +G+L AC+  G +++G  + +     +GI   +  
Sbjct: 188 GDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQG-KWVHGYLKAHGIKINLFF 246

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
              +VD+  + G +  A    + +  K+  + W T++   + H  
Sbjct: 247 GTALVDMYSKCGEVQLAMDVFERMQYKNV-LAWTTMIKGLAMHGR 290


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 186/444 (41%), Positives = 270/444 (60%), Gaps = 7/444 (1%)

Query: 118 LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEA 177
           L P   ++ SLL++C  +  +A++ GKQLH      G   +  + T L+NLY  C  + +
Sbjct: 71  LTPTYSNYASLLQSC--IARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSS 128

Query: 178 ARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL 237
           AR +F+ I +  +  +N +I  YA +     A+ L+ ++ +  L P + T    L +CA 
Sbjct: 129 ARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAA 188

Query: 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD---TQAW 294
           L +++ G+ IHE++ + G +K V V  ALIDM+AKCG +  A  VFD +  +D     +W
Sbjct: 189 LSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSW 248

Query: 295 SAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD 354
           +AMI  YA HG   +++ +FEEM +    PD ITF+G+L ACSH GL++EGW +F +M  
Sbjct: 249 NAMITGYAMHGHATEALDLFEEMNRV-AKPDHITFVGVLSACSHGGLLEEGWMFFETMIR 307

Query: 355 KYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAK 414
            Y I P ++HY CMVDLLG +GRLDEAY  I ++ +     +W  LL+SC  H N+ L +
Sbjct: 308 DYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGE 367

Query: 415 QVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVV 474
             +ER+ EL+    G+YVILSN+ A+AG+WE V  LRKLM DR + K   CS IEV N V
Sbjct: 368 IALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKV 427

Query: 475 REFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKL 534
             F SGD  H  S ++   L+ +   +K  GY P T  V H D+ED+EK   +  HSE+L
Sbjct: 428 HAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFH-DVEDDEKANMVCSHSERL 486

Query: 535 AITFGLLNTPPGTTIRVVKNLRVC 558
           AI FGL++TPPGT + + KNLR+C
Sbjct: 487 AIAFGLISTPPGTRLLITKNLRIC 510



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/354 (31%), Positives = 183/354 (51%), Gaps = 40/354 (11%)

Query: 4   TPSPPITQSPPP-----------KLCTN--------TP---NALSLLPRCTSFRGLK--- 38
           +P+P  T S P              C+N        TP   N  SLL  C + + +K   
Sbjct: 36  SPNPSFTSSAPQFDNNQTHLKAIPSCSNPHAESTCLTPTYSNYASLLQSCIARKAIKPGK 95

Query: 39  QIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           Q+HA         D  + TKL+N +C       S+  A LLFDRIP+ +I L+N + RGY
Sbjct: 96  QLHAQVCLAGFGFDTVIATKLVNLYCV----CDSLSSARLLFDRIPKHNIFLWNVLIRGY 151

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           + +     A+ L+ ++ + GL+PD+++FP +LKACA +   A+E G+++H   ++ G   
Sbjct: 152 AWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAAL--SAIEHGREIHEHVVQTGWEK 209

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENI---SEPCVVSYNAIITAYARSSRPNEALSLFR 214
           +++V   LI++YA+C  V +AR +F+ I       VVS+NA+IT YA      EAL LF 
Sbjct: 210 DVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGHATEALDLFE 269

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE-YIKKYGLDKYVKVNTALIDMHAKC 273
           E+  R  KP  +T +  LS+C+  G L+ G    E  I+ Y +D  V+  T ++D+    
Sbjct: 270 EMN-RVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHS 328

Query: 274 GRLDDAVSVFDNMSG-KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           GRLD+A ++   M    D+  W A++ +   H       +  E ++  ++ PD+
Sbjct: 329 GRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLI--ELEPDD 380


>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
 gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
 gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
          Length = 551

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 183/516 (35%), Positives = 300/516 (58%), Gaps = 44/516 (8%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           ++ L  C +FR L ++H   ++  +     + T++++ C  +   +   HA  +F ++ +
Sbjct: 18  MARLRACVTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNAHRRVT---HAARVFAQVRD 74

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP-------DDYSFPSLLKACACVGA 137
           P++ L N M + Y+++     A+ +++ +L     P       D +++P LLKAC   G 
Sbjct: 75  PNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACG--GT 132

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
            ALE GKQ+H   ++ G +S+  V  +LI +Y    D+  A ++F+ + E  VVS+N +I
Sbjct: 133 AALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLI 192

Query: 198 TAYAR-----------SSRPNE--------------------ALSLFRELQERNLKPTDV 226
           +A+AR           +S P++                    A+  FR +Q    +P DV
Sbjct: 193 SAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDV 252

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
           ++++ L +CA LG+L+LG+WI+ Y K++G+     +  AL++M+AKCG +D A+ +FD M
Sbjct: 253 SIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGM 312

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK-AQVSPDEITFLGLLYACSHTGLVDEG 345
           + KD  +WS +I   A HG+ H+++ +F EM K  +V P+ ITF+GLL ACS+ GLVDEG
Sbjct: 313 ADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEG 372

Query: 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS 405
            ++F  M D YG+ PG++HYGC+VDLLGR+G++  A   + ++P+ +   +W +LLS+C 
Sbjct: 373 LSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACR 432

Query: 406 SHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGC 465
           SH ++  A    ER+ EL+    G+ V+L+N+ A A RW DV   RK ++ R + K PGC
Sbjct: 433 SHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGC 492

Query: 466 SSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           S IEV NVVREF +G+G+ S    L   LD L   L
Sbjct: 493 SLIEVGNVVREFVAGEGLSSELGGLAGVLDILASHL 528


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 194/537 (36%), Positives = 306/537 (56%), Gaps = 11/537 (2%)

Query: 26   SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
            S+L  C     L+   QIH+  IKT  Q +  V + LI+   +      ++ A  +  R 
Sbjct: 478  SILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAK---LGKLDTAWDILIRF 534

Query: 83   PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
               D+V + TM  GY++     +A+  F ++L+ G+  D+    + + ACA  G +AL+E
Sbjct: 535  AGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACA--GLQALKE 592

Query: 143  GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
            G+Q+H  A   G +S+L     L+ LY++C ++E A   FE       +++NA+++ + +
Sbjct: 593  GQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQ 652

Query: 203  SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
            S    EAL +F  +    +   + T  SA+ + +   ++  GK +H  I K G D   +V
Sbjct: 653  SGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEV 712

Query: 263  NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
              A+I M+AKCG + DA   F  +S K+  +W+AMI AY+ HG G +++  F++M+ + V
Sbjct: 713  CNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNV 772

Query: 323  SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
             P+ +T +G+L ACSH GLVD+G  YF SM  +YG+ P  +HY C+VD+L RAG L  A 
Sbjct: 773  RPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAK 832

Query: 383  RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
             FI E+PI+   ++WRTLLS+C  H N+ + +     + EL+      YV+LSNL A   
Sbjct: 833  DFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCR 892

Query: 443  RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
            +W+  D  R+ MK++GV K PG S IEV N +  F+ GD  H  + ++ +   +L K   
Sbjct: 893  KWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFKDLTKRAS 952

Query: 503  MVGYVPDT-SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             +GYV D  SL+   +++ E+K+  +  HSEKLAI+FGLL+ P    I V+KNLRVC
Sbjct: 953  EIGYVQDCFSLL--SELQQEQKDPTIFIHSEKLAISFGLLSLPATMPINVMKNLRVC 1007



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 120/404 (29%), Positives = 187/404 (46%), Gaps = 11/404 (2%)

Query: 21  TPNALS-LLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           TP A S +L  C     L+   Q+H + +K    +D  V   L++      +  S EH  
Sbjct: 270 TPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEH-- 327

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +F  + + D V +NT+  G S+     +A+ LF  +   GL PD  +  SL+ AC+  G
Sbjct: 328 -IFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDG 386

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
              L  G+QLH +  KLG  SN  +   L+NLYA+CSD+E A   F       VV +N +
Sbjct: 387 T--LFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVM 444

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           + AY        +  +FR++Q   + P   T  S L +C  LG L+LG+ IH  I K   
Sbjct: 445 LVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSF 504

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
                V + LIDM+AK G+LD A  +    +GKD  +W+ MI  Y  +    K++  F +
Sbjct: 505 QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQ 564

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M+   +  DE+     + AC+    + EG    ++     G    +     +V L  + G
Sbjct: 565 MLDRGIRSDEVGLTNAVSACAGLQALKEG-QQIHAQACVSGFSSDLPFQNALVTLYSKCG 623

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
            ++EAY   ++       I W  L+S      N   A +V  R+
Sbjct: 624 NIEEAYLAFEQTEAGDN-IAWNALVSGFQQSGNNEEALRVFARM 666



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 178/364 (48%), Gaps = 6/364 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +++H+  +K    N+  +  KL++F         ++ A  +FD +PE  I  +N M +  
Sbjct: 88  RKLHSQILKLGFDNNACLSEKLLDFYL---FKGDLDGALKVFDEMPERTIFTWNKMIKEL 144

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           +      +   LF  ++N  + P++ +F  +L+AC   G+ A +  +Q+H   I  GL  
Sbjct: 145 ASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRG-GSVAFDVVEQIHARIIYQGLGK 203

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           +  VC  LI+LY+    V+ ARR+F+ +      S+ A+I+  +++    EA+ LF ++ 
Sbjct: 204 STIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMY 263

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              + PT     S LS+C  + SL++G+ +H  + K G      V  AL+ ++   G L 
Sbjct: 264 VLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLI 323

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            A  +F NMS +D   ++ +I   +  G G K++ +F+ M    + PD  T   L+ ACS
Sbjct: 324 SAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACS 383

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
             G +  G    ++   K G     K  G +++L  +   ++ A  +  E  +++  +LW
Sbjct: 384 SDGTLFSG-QQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENV-VLW 441

Query: 398 RTLL 401
             +L
Sbjct: 442 NVML 445



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 112/224 (50%), Gaps = 4/224 (1%)

Query: 115 NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174
           N G+ P+  +   LL+ C      +L+EG++LH   +KLG ++N  +   L++ Y    D
Sbjct: 60  NCGIRPNHQTLKWLLEGCLKTNG-SLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGD 118

Query: 175 VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSS 234
           ++ A ++F+ + E  + ++N +I   A  S   +   LF  +   N+ P + T    L +
Sbjct: 119 LDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEA 178

Query: 235 CALLGSL--DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ 292
           C   GS+  D+ + IH  I   GL K   V   LID++++ G +D A  VFD +  KD  
Sbjct: 179 CR-GGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHS 237

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           +W AMI   + +    ++I +F +M    + P    F  +L AC
Sbjct: 238 SWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSAC 281



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 2/188 (1%)

Query: 221 LKPTDVTMLSALSSCALL-GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
           ++P   T+   L  C    GSLD G+ +H  I K G D    ++  L+D +   G LD A
Sbjct: 63  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGA 122

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
           + VFD M  +    W+ MI   A+     K   +F  M+   V+P+E TF G+L AC   
Sbjct: 123 LKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGG 182

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRT 399
            +  +     ++     G+         ++DL  R G +D A R  D L +K     W  
Sbjct: 183 SVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSS-WVA 241

Query: 400 LLSSCSSH 407
           ++S  S +
Sbjct: 242 MISGLSKN 249


>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
          Length = 551

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 183/516 (35%), Positives = 300/516 (58%), Gaps = 44/516 (8%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           ++ L  C +FR L ++H   ++  +     + T++++ C  +   +   HA  +F ++ +
Sbjct: 18  MARLRACVTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNAHRRVT---HAARVFAQVRD 74

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP-------DDYSFPSLLKACACVGA 137
           P++ L N M + Y+++     A+ +++ +L     P       D +++P LLKAC   G 
Sbjct: 75  PNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACG--GT 132

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
            ALE GKQ+H   ++ G +S+  V  +LI +Y    D+  A ++F+ + E  VVS+N +I
Sbjct: 133 AALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLI 192

Query: 198 TAYAR-----------SSRPNE--------------------ALSLFRELQERNLKPTDV 226
           +A+AR           +S P++                    A+  FR +Q    +P DV
Sbjct: 193 SAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDV 252

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
           ++++ L +CA LG+L+LG+WI+ Y K++G+     +  AL++M+AKCG +D A+ +FD M
Sbjct: 253 SIVAVLPACAQLGTLELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGM 312

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK-AQVSPDEITFLGLLYACSHTGLVDEG 345
           + KD  +WS +I   A HG+ H+++ +F EM K  +V P+ ITF+GLL ACS+ GLVDEG
Sbjct: 313 ADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEG 372

Query: 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS 405
            ++F  M D YG+ PG++HYGC+VDLLGR+G++  A   + ++P+ +   +W +LLS+C 
Sbjct: 373 LSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACR 432

Query: 406 SHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGC 465
           SH ++  A    ER+ EL+    G+ V+L+N+ A A RW DV   RK ++ R + K PGC
Sbjct: 433 SHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGC 492

Query: 466 SSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           S IEV NVVREF +G+G+ S    L   LD L   L
Sbjct: 493 SLIEVGNVVREFVAGEGLSSELGGLAGVLDILASHL 528


>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
          Length = 551

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 183/516 (35%), Positives = 300/516 (58%), Gaps = 44/516 (8%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           ++ L  C +FR L ++H   ++  +     + T++++ C  +   +   HA  +F ++ +
Sbjct: 18  MARLRACVTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNAHRRVT---HAARVFAQVRD 74

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP-------DDYSFPSLLKACACVGA 137
           P++ L N M + Y+++     A+ +++ +L     P       D +++P LLKAC   G 
Sbjct: 75  PNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACG--GT 132

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
            ALE GKQ+H   ++ G +S+  V  +LI +Y    D+  A ++F+ + E  VVS+N +I
Sbjct: 133 AALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLI 192

Query: 198 TAYAR-----------SSRPNE--------------------ALSLFRELQERNLKPTDV 226
           +A+AR           +S P++                    A+  FR +Q    +P DV
Sbjct: 193 SAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDV 252

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
           ++++ L +CA LG+L+LG+WI+ Y K++G+     +  AL++M+AKCG +D A+ +FD M
Sbjct: 253 SIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGM 312

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK-AQVSPDEITFLGLLYACSHTGLVDEG 345
           + KD  +WS +I   A HG+ H+++ +F EM K  +V P+ ITF+GLL ACS+ GLVDEG
Sbjct: 313 ADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEG 372

Query: 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS 405
            ++F  M D YG+ PG++HYGC+VDLLGR+G++  A   + ++P+ +   +W +LLS+C 
Sbjct: 373 LSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACR 432

Query: 406 SHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGC 465
           SH ++  A    ER+ EL+    G+ V+L+N+ A A RW DV   RK ++ R + K PGC
Sbjct: 433 SHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGC 492

Query: 466 SSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           S IEV NVVREF +G+G+ S    L   LD L   L
Sbjct: 493 SLIEVGNVVREFVAGEGLSSELGGLAGVLDILASHL 528


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 189/523 (36%), Positives = 307/523 (58%), Gaps = 9/523 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +QIH+  IKT+   ++ V   L++F +++    S+  A  LFD +PE D V +N +  GY
Sbjct: 270 QQIHSFVIKTNFVWNVFVSNALLDFYSKH---DSVIDARKLFDEMPEQDGVSYNVIISGY 326

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           +       A  LF EL  +      + F ++L   +       E G+Q+H   I    +S
Sbjct: 327 AWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIAS--NTLDWEMGRQIHAQTIVTTADS 384

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            + V  +L+++YA+C   E A  IF N++    V + A+I+AY +     E L LF +++
Sbjct: 385 EILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMR 444

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           + ++     T  S L + A + SL LGK +H +I K G    V   +AL+D++AKCG + 
Sbjct: 445 QASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIK 504

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           DAV  F  M  ++  +W+AMI AYA +G+   ++  F+EM+ + + PD ++FLG+L ACS
Sbjct: 505 DAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACS 564

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H+GLV+EG  +F SM   Y + P  +HY  +VD+L R+GR +EA + + E+PI    I+W
Sbjct: 565 HSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMW 624

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDD-SHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
            ++L++C  H N  LA++  +++F +++      YV +SN+ A AG+WE+V  + K M+D
Sbjct: 625 SSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRD 684

Query: 457 RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHG 516
           RGV K+P  S +E+ +    F + D  H    +++K +D L K ++ +GY PDTS   H 
Sbjct: 685 RGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHN 744

Query: 517 DMEDEEKEI-ALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             EDE+ ++ +L+YHSE+LAI F L++TP G+ I V+KNLR C
Sbjct: 745 --EDEKFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRAC 785



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 165/338 (48%), Gaps = 10/338 (2%)

Query: 69  TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSL 128
           + ++  A  LFD + E   V +  +  GYS+      A  LFV++   G  PD  +F +L
Sbjct: 96  SGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTL 155

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP 188
           L  C   G E   +  Q+    IKLG +S L V  TL++ Y + + ++ A ++F+ + E 
Sbjct: 156 LSGCN--GHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEI 213

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
             VSYNA+IT Y++     +A++LF E+Q   LKPT+ T  + L +   L  + LG+ IH
Sbjct: 214 DSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIH 273

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
            ++ K      V V+ AL+D ++K   + DA  +FD M  +D  +++ +I  YA  G+  
Sbjct: 274 SFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHK 333

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG---IKHY 365
            +  +F E+        +  F  +L   S+T  +D  W     +  +  +      I   
Sbjct: 334 YAFDLFRELQFTAFDRKQFPFATMLSIASNT--LD--WEMGRQIHAQTIVTTADSEILVG 389

Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
             +VD+  + G+ +EA      L  +S  + W  ++S+
Sbjct: 390 NSLVDMYAKCGKFEEAEMIFTNLTHRSA-VPWTAMISA 426



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 106/234 (45%), Gaps = 13/234 (5%)

Query: 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
           +I  + K G L +A  +FD M  +    W+ +I  Y+   Q  ++  +F +M +    PD
Sbjct: 89  MISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPD 148

Query: 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI 385
            +TF+ LL  C+   + ++      +   K G    +     +VD   ++ RLD A +  
Sbjct: 149 YVTFVTLLSGCNGHEMGNQ-ITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLF 207

Query: 386 DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS--HGGDYVILSNLCARAGR 443
            E+P +   + +  +++  S     GL ++ +    E+ +S     ++   + LCA  G 
Sbjct: 208 KEMP-EIDSVSYNAMITGYSKD---GLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIG- 262

Query: 444 WEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDEL 497
            +D+   +++     V+K     ++ V+N + +F+S    H    D +K  DE+
Sbjct: 263 LDDIVLGQQI--HSFVIKTNFVWNVFVSNALLDFYSK---HDSVIDARKLFDEM 311


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 187/540 (34%), Positives = 317/540 (58%), Gaps = 17/540 (3%)

Query: 27  LLPRCTSFRGL---KQIHAVTIKTHLQND---LNVLTKLINFCTQNPTTSSMEHAHLLFD 80
           LL +C   + L   K++H+  +K    +D    N+L ++   C        +  A  +FD
Sbjct: 30  LLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKC------GGIAEARSVFD 83

Query: 81  RIPE--PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
           +I E   D++ +N +   Y+++     A+ LF  +   G++ +  +  + + ACA + +E
Sbjct: 84  QIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSE 143

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
             EEG+ +H  A+   L S+  V T+L+N++ +C +V+AAR +F+++    +V++N ++ 
Sbjct: 144 --EEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVA 201

Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
            Y+++ +  +A+ +FR +    ++P  VT L+ + +CA L +   G+ +H+ I   G+  
Sbjct: 202 VYSQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPM 261

Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
            V + TA++  + KCGRLD+A ++FD++  K+T  WSA++ AYA +G   ++I ++ EM+
Sbjct: 262 DVALGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMV 321

Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
           +  +  + ITFLGLL+ACSH G   +G +YF SM   +G+VP  +HY  ++DLLGR+G+L
Sbjct: 322 QGGLEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQL 381

Query: 379 DEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438
             +   I+ +P +     W  LL +C  H ++    ++ E I+ELD    G Y++LSNL 
Sbjct: 382 QLSEDLINSMPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELDPEDSGPYILLSNLY 441

Query: 439 ARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELV 498
           +  GR ++    RK M+ RG+ K PG SSIEV + V EF +   +H     +   ++ L 
Sbjct: 442 SSTGRMDEARRTRKAMRLRGITKQPGLSSIEVKDRVHEFMAAQKLHPQLGRIHAEIERLK 501

Query: 499 KELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             +K  GYV D   V   D+E+EEKE  L YHSE+LAI FGL++TPPGT + +VKNLRVC
Sbjct: 502 ARVKEAGYVADVRAVLR-DVEEEEKEQLLWYHSERLAIAFGLISTPPGTALHIVKNLRVC 560



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 100/213 (46%), Gaps = 7/213 (3%)

Query: 214 RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273
           R + ER  + +   +L  L  CA   +L  GK +H  + K G      +   LI+M+ KC
Sbjct: 15  RTVDERREEISTYVLL--LKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKC 72

Query: 274 GRLDDAVSVFDNMSGK--DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLG 331
           G + +A SVFD +  K  D  +W+ +I AY  +G G +++ +F+ M    V  +++T + 
Sbjct: 73  GGIAEARSVFDQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLIN 132

Query: 332 LLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIK 391
            + AC+     +EG        DK  +         +V++ G+   +D A    D LP K
Sbjct: 133 AIDACASLPSEEEGRIVHAIAVDKR-LESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRK 191

Query: 392 STPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
           +  + W  +++  S +     A QV  R  +L+
Sbjct: 192 NL-VTWNNMVAVYSQNWQCKKAIQVF-RFMDLE 222


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 187/483 (38%), Positives = 283/483 (58%), Gaps = 5/483 (1%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL--LPDDYSFPSLLKACACV 135
           LF  +P  +++ + +M  G  +      A+ LF +++  G+   P   ++  ++ ACA  
Sbjct: 157 LFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACA-- 214

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
            A AL +G Q+H    KLG + + Y+   LI  YA C  +E + R+F       VV + A
Sbjct: 215 NASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTA 274

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           ++T Y  + +  +AL +F E+    + P   +  SAL+SC  L +LD G+ IH    K G
Sbjct: 275 LVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLG 334

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
           L+  V V  +LI M+ +CG L+D V +F  +S K+  +W+++IV  A HG G  ++  F 
Sbjct: 335 LETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFN 394

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
           +M+++ V PDEITF GLL ACSH+G+  +G   F    +       + HY CMVD+LGR+
Sbjct: 395 QMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRS 454

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
           G+L+EA   I  +P+K+  ++W  LLS+C+ H+ L +A++  + I +L+      YV+LS
Sbjct: 455 GKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLS 514

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           NL A A RW DV  +R+ MK RG+ K PG S I +     EF SGD  H  S  + + L+
Sbjct: 515 NLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDRIYQKLE 574

Query: 496 ELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNL 555
            L  +LK +GYVPD     H D+EDE+KE+ L YHSE+LAI FGL++T  G+TI V+KNL
Sbjct: 575 WLGGKLKELGYVPDQRFALH-DVEDEQKEVMLSYHSERLAIGFGLISTVEGSTITVMKNL 633

Query: 556 RVC 558
           RVC
Sbjct: 634 RVC 636



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 137/274 (50%), Gaps = 15/274 (5%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           QIHA   K     D  +   LI F         ME +  +F      ++V++  +  GY 
Sbjct: 224 QIHAHVFKLGYSFDAYISAALITF---YANCKQMEDSLRVFHGKLHMNVVIWTALVTGYG 280

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
            +     A+ +F E++  G+LP+  SF S L +C   G EAL+ G+++H  A+KLGL ++
Sbjct: 281 LNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCC--GLEALDWGREIHTAAVKLGLETD 338

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
           ++V  +LI +Y  C ++     IF+ IS+  +VS+N++I   A+      AL+ F ++  
Sbjct: 339 VFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVR 398

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK-----KYGLDKYVKVNTALIDMHAKC 273
             ++P ++T    LS+C+  G    G+ + +Y       +  LD Y      ++D+  + 
Sbjct: 399 SMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHY----ACMVDILGRS 454

Query: 274 GRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHGQ 306
           G+L++A  +  NM  K ++  W  ++ A   H +
Sbjct: 455 GKLEEAEELIRNMPVKANSMVWLVLLSACTMHSK 488



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 174/411 (42%), Gaps = 54/411 (13%)

Query: 57  TKLINFCTQNPTT-----SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFV 111
           TK   F  Q+  T       ++ A  +FD++  PD+ L+  M  GY+R+     A+ LF 
Sbjct: 7   TKFCTFSYQSMITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFY 66

Query: 112 ELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE 171
           E+     + D  S+ S++K C       L   ++L           ++   TT+IN + +
Sbjct: 67  EMP----VKDVVSWNSMIKGC--FDCADLTMARKL----FDEMPERSVVSWTTMINGFLQ 116

Query: 172 CSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN----------- 220
              +E A  +F  +    + ++N++I  Y  + R  + L LF+E+  RN           
Sbjct: 117 FGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGL 176

Query: 221 ----------------------LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
                                 +KPT  T    +++CA   +L  G  IH ++ K G   
Sbjct: 177 DQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSF 236

Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
              ++ ALI  +A C +++D++ VF      +   W+A++  Y  + +   ++ +F EMM
Sbjct: 237 DAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMM 296

Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
           +  V P++ +F   L +C     +D G    ++   K G+   +     ++ +  R G L
Sbjct: 297 REGVLPNQSSFTSALNSCCGLEALDWG-REIHTAAVKLGLETDVFVGNSLIVMYYRCGNL 355

Query: 379 DEAYRFIDELPIKSTPILWRTLLSSCSSHN----NLGLAKQVIERIFELDD 425
           ++       +  K   + W +++  C+ H      L    Q++  + E D+
Sbjct: 356 NDGVVIFKRIS-KKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDE 405



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 100/241 (41%), Gaps = 44/241 (18%)

Query: 20  NTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N  +  S L  C     L   ++IH   +K  L+ D+ V   LI          ++    
Sbjct: 303 NQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLI---VMYYRCGNLNDGV 359

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
           ++F RI + +IV +N++  G ++    + A+  F +++ S + PD+ +F  LL AC+  G
Sbjct: 360 VIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSG 419

Query: 137 AEALEEGKQLH-----------------CFAIKLGLNSNLYVCTTLIN------------ 167
               ++G+ L                  C    LG +  L     LI             
Sbjct: 420 MS--QKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWL 477

Query: 168 -LYAEC---SDVEAARRIFENIS--EP-CVVSYNAIITAYARSSRPNEALSLFRELQERN 220
            L + C   S +E A R  + I   EP C  +Y  +   YA +SR ++   + RE+++R 
Sbjct: 478 VLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRG 537

Query: 221 L 221
           +
Sbjct: 538 I 538


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 194/537 (36%), Positives = 307/537 (57%), Gaps = 11/537 (2%)

Query: 26  SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  C     L+   QIH+  IKT+ Q +  V + LI+   +      ++ A  +  R 
Sbjct: 455 SILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAK---LGKLDTAWDILIRF 511

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
              D+V + TM  GY++     +A+  F ++L+ G+  D+    + + ACA  G +AL+E
Sbjct: 512 AGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACA--GLQALKE 569

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G+Q+H  A   G +S+L     L+ LY+ C  +E +   FE       +++NA+++ + +
Sbjct: 570 GQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQ 629

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
           S    EAL +F  +    +   + T  SA+ + +   ++  GK +H  I K G D   +V
Sbjct: 630 SGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEV 689

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
             ALI M+AKCG + DA   F  +S K+  +W+A+I AY+ HG G +++  F++M+ + V
Sbjct: 690 CNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNV 749

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            P+ +T +G+L ACSH GLVD+G  YF SM  +YG+ P  +HY C+VD+L RAG L  A 
Sbjct: 750 RPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAK 809

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
            FI E+PIK   ++WRTLLS+C  H N+ + +     + EL+      YV+LSNL A + 
Sbjct: 810 EFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSK 869

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           +W+  D  R+ MK++GV K PG S IEV N +  F+ GD  H  + ++ +   +L K   
Sbjct: 870 KWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRAS 929

Query: 503 MVGYVPDT-SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +GYV D  SL++  +++ E+K+  +  HSEKLAI+FGLL+ P    I V+KNLRVC
Sbjct: 930 EIGYVQDCFSLLN--ELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVC 984



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/404 (29%), Positives = 187/404 (46%), Gaps = 11/404 (2%)

Query: 21  TPNALS-LLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           TP A S +L  C     L+   Q+H + +K    +D  V   L++         S EH  
Sbjct: 247 TPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEH-- 304

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +F  + + D V +NT+  G S+     +A+ LF  +   GL PD  +  SL+ AC+  G
Sbjct: 305 -IFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADG 363

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
              L  G+QLH +  KLG  SN  +   L+NLYA+C+D+E A   F       VV +N +
Sbjct: 364 T--LFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVM 421

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           + AY        +  +FR++Q   + P   T  S L +C  LG L+LG+ IH  I K   
Sbjct: 422 LVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNF 481

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
                V + LIDM+AK G+LD A  +    +GKD  +W+ MI  Y  +    K++  F +
Sbjct: 482 QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQ 541

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M+   +  DE+     + AC+    + EG    ++     G    +     +V L  R G
Sbjct: 542 MLDRGIRSDEVGLTNAVSACAGLQALKEG-QQIHAQACVSGFSSDLPFQNALVTLYSRCG 600

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
           +++E+Y   ++       I W  L+S      N   A +V  R+
Sbjct: 601 KIEESYLAFEQTEAGDN-IAWNALVSGFQQSGNNEEALRVFVRM 643



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 182/365 (49%), Gaps = 8/365 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +++H+  +K  L ++  +  KL +F         +  A  +FD +PE  I  +N M +  
Sbjct: 65  RKLHSQILKLGLDSNGCLSEKLFDFYL---FKGDLYGAFKVFDEMPERTIFTWNKMIKEL 121

Query: 98  SRSKTPIRAIF-LFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           + S+  I  +F LFV +++  + P++ +F  +L+AC   G+ A +  +Q+H   +  GL 
Sbjct: 122 A-SRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG-GSVAFDVVEQIHARILYQGLR 179

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            +  VC  LI+LY+    V+ ARR+F+ +      S+ A+I+  +++    EA+ LF ++
Sbjct: 180 DSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDM 239

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
               + PT     S LS+C  + SL++G+ +H  + K G      V  AL+ ++   G L
Sbjct: 240 YVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNL 299

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
             A  +F NMS +D   ++ +I   +  G G K++ +F+ M    + PD  T   L+ AC
Sbjct: 300 ISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVAC 359

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           S  G +  G    ++   K G     K  G +++L  +   ++ A  +  E  +++  +L
Sbjct: 360 SADGTLFRG-QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENV-VL 417

Query: 397 WRTLL 401
           W  +L
Sbjct: 418 WNVML 422



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 110/224 (49%), Gaps = 4/224 (1%)

Query: 115 NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174
           N G+ P+  +   LL+ C      +L+EG++LH   +KLGL+SN  +   L + Y    D
Sbjct: 37  NRGIRPNHQTLKWLLEGCLKTNG-SLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGD 95

Query: 175 VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSS 234
           +  A ++F+ + E  + ++N +I   A  +   E   LF  +   N+ P + T    L +
Sbjct: 96  LYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEA 155

Query: 235 CALLGSL--DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ 292
           C   GS+  D+ + IH  I   GL     V   LID++++ G +D A  VFD +  KD  
Sbjct: 156 CR-GGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHS 214

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           +W AMI   + +    ++I +F +M    + P    F  +L AC
Sbjct: 215 SWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSAC 258



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 2/193 (1%)

Query: 216 LQERNLKPTDVTMLSALSSCALL-GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
           ++ R ++P   T+   L  C    GSLD G+ +H  I K GLD    ++  L D +   G
Sbjct: 35  VENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKG 94

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
            L  A  VFD M  +    W+ MI   A+     +   +F  M+   V+P+E TF G+L 
Sbjct: 95  DLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLE 154

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           AC    +  +     ++     G+         ++DL  R G +D A R  D L +K   
Sbjct: 155 ACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHS 214

Query: 395 ILWRTLLSSCSSH 407
             W  ++S  S +
Sbjct: 215 S-WVAMISGLSKN 226


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 199/523 (38%), Positives = 304/523 (58%), Gaps = 9/523 (1%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           Q+H + IK+ L + + V   ++N  +++   S    A  +FD +   + V +N+M  G+ 
Sbjct: 214 QVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSD---AKAVFDSMENRNAVSWNSMIAGFV 270

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
            +   + A  LF  +   G+      F +++K CA +  + +   KQLHC  IK G + +
Sbjct: 271 TNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANI--KEMSFAKQLHCQVIKNGSDFD 328

Query: 159 LYVCTTLINLYAECSDVEAARRIFENI-SEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           L + T L+  Y++CS+++ A ++F  +     VVS+ AII+ Y ++ R + A++LF +++
Sbjct: 329 LNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMR 388

Query: 218 -ERNLKPTDVTMLSALSSCAL-LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
            E  ++P + T  S L++CA    S++ GK  H    K G    + V++AL+ M+AK G 
Sbjct: 389 REEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGN 448

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           ++ A  VF     +D  +W++MI  YA HG G KS+ +FEEM    +  D ITF+G++ A
Sbjct: 449 IESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISA 508

Query: 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
           C+H GLV+EG  YF  M   Y IVP ++HY CMVDL  RAG L++A   I+++P  +   
Sbjct: 509 CTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGAT 568

Query: 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455
           +WRTLL++C  H N+ L +   E++  L       YV+LSN+ A AG W++   +RKLM 
Sbjct: 569 IWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMD 628

Query: 456 DRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHH 515
            + V K  G S IEV N    F +GD  H  S  +   L+EL   LK  GY PDT  V H
Sbjct: 629 MKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLH 688

Query: 516 GDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            D+E+E KE+ L  HSE+LAI FGL+ TPPGT I++VKNLRVC
Sbjct: 689 -DVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVC 730



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 120/470 (25%), Positives = 239/470 (50%), Gaps = 29/470 (6%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           KQ+H   IK     D++V T L++   +   T S+E    +FD +   ++V + ++  GY
Sbjct: 112 KQVHCQCIKCGFVEDVSVGTSLVDMYMK---TESVEDGERVFDEMRVKNVVSWTSLLAGY 168

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            ++    +A+ LF ++   G+ P+ ++F ++L   A  GA  +E+G Q+H   IK GL+S
Sbjct: 169 RQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGA--VEKGVQVHTMVIKSGLDS 226

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            ++V  +++N+Y++   V  A+ +F+++     VS+N++I  +  +    EA  LF  ++
Sbjct: 227 TIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMR 286

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              +K T     + +  CA +  +   K +H  + K G D  + + TAL+  ++KC  +D
Sbjct: 287 LEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEID 346

Query: 278 DAVSVFDNMSG-KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDEITFLGLLYA 335
           DA  +F  M G ++  +W+A+I  Y  +G+  +++ +F +M + + V P+E TF  +L A
Sbjct: 347 DAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNA 406

Query: 336 CSH-TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           C+  T  V++G   F+S   K G    +     +V +  + G ++ A        +    
Sbjct: 407 CAAPTASVEQG-KQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKR-QVDRDL 464

Query: 395 ILWRTLLSSCSSH----NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW-EDVDY 449
           + W +++S  + H     +L + +++  +  ELD   G  ++ + + C  AG   E   Y
Sbjct: 465 VSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELD---GITFIGVISACTHAGLVNEGQRY 521

Query: 450 LRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVK 499
              ++KD  +  VP   ++E  + + + +S  G+      L+KA+D + K
Sbjct: 522 FDLMVKDYHI--VP---TMEHYSCMVDLYSRAGM------LEKAMDLINK 560



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 139/265 (52%), Gaps = 2/265 (0%)

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
           H+  LFD  P+  +   N +   +SR+     A+ LF+ L  SG   D  S   +LK C 
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCG 103

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
           C+    +  GKQ+HC  IK G   ++ V T+L+++Y +   VE   R+F+ +    VVS+
Sbjct: 104 CLFDRIV--GKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSW 161

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
            +++  Y ++    +AL LF ++Q   +KP   T  + L   A  G+++ G  +H  + K
Sbjct: 162 TSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIK 221

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
            GLD  + V  ++++M++K   + DA +VFD+M  ++  +W++MI  + T+G   ++  +
Sbjct: 222 SGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFEL 281

Query: 314 FEEMMKAQVSPDEITFLGLLYACSH 338
           F  M    V   +  F  ++  C++
Sbjct: 282 FYRMRLEGVKLTQTIFATVIKLCAN 306



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 117/226 (51%), Gaps = 4/226 (1%)

Query: 178 ARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLS-ALSSCA 236
           ++++F+   +  +   N ++  ++R+ +  EAL+LF  L+ R+  PTD + LS  L  C 
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLR-RSGSPTDGSSLSCVLKVCG 103

Query: 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSA 296
            L    +GK +H    K G  + V V T+L+DM+ K   ++D   VFD M  K+  +W++
Sbjct: 104 CLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTS 163

Query: 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKY 356
           ++  Y  +G   +++ +F +M    + P+  TF  +L   +  G V++G    ++M  K 
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKS 222

Query: 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
           G+   I     MV++  ++  + +A    D +  ++  + W ++++
Sbjct: 223 GLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNA-VSWNSMIA 267


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 187/483 (38%), Positives = 283/483 (58%), Gaps = 5/483 (1%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL--LPDDYSFPSLLKACACV 135
           LF  +P  +++ + +M  G  +      A+ LF +++  G+   P   ++  ++ ACA  
Sbjct: 141 LFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACA-- 198

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
            A AL +G Q+H    KLG + + Y+   LI  YA C  +E + R+F       VV + A
Sbjct: 199 NASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTA 258

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           ++T Y  + +  +AL +F E+    + P   +  SAL+SC  L +LD G+ IH    K G
Sbjct: 259 LVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLG 318

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
           L+  V V  +LI M+ +CG L+D V +F  +S K+  +W+++IV  A HG G  ++  F 
Sbjct: 319 LETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFN 378

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
           +M+++ V PDEITF GLL ACSH+G+  +G   F    +       + HY CMVD+LGR+
Sbjct: 379 QMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRS 438

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
           G+L+EA   I  +P+K+  ++W  LLS+C+ H+ L +A++  + I +L+      YV+LS
Sbjct: 439 GKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLS 498

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           NL A A RW DV  +R+ MK RG+ K PG S I +     EF SGD  H  S  + + L+
Sbjct: 499 NLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDRIYQKLE 558

Query: 496 ELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNL 555
            L  +LK +GYVPD     H D+EDE+KE+ L YHSE+LAI FGL++T  G+TI V+KNL
Sbjct: 559 WLGGKLKELGYVPDQRFALH-DVEDEQKEVMLSYHSERLAIGFGLISTVEGSTITVMKNL 617

Query: 556 RVC 558
           RVC
Sbjct: 618 RVC 620



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 137/274 (50%), Gaps = 15/274 (5%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           QIHA   K     D  +   LI F         ME +  +F      ++V++  +  GY 
Sbjct: 208 QIHAHVFKLGYSFDAYISAALITF---YANCKQMEDSLRVFHGKLHMNVVIWTALVTGYG 264

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
            +     A+ +F E++  G+LP+  SF S L +C   G EAL+ G+++H  A+KLGL ++
Sbjct: 265 LNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCC--GLEALDWGREIHTAAVKLGLETD 322

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
           ++V  +LI +Y  C ++     IF+ IS+  +VS+N++I   A+      AL+ F ++  
Sbjct: 323 VFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVR 382

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK-----KYGLDKYVKVNTALIDMHAKC 273
             ++P ++T    LS+C+  G    G+ + +Y       +  LD Y      ++D+  + 
Sbjct: 383 SMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHY----ACMVDILGRS 438

Query: 274 GRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHGQ 306
           G+L++A  +  NM  K ++  W  ++ A   H +
Sbjct: 439 GKLEEAEELIRNMPVKANSMVWLVLLSACTMHSK 472



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/399 (21%), Positives = 170/399 (42%), Gaps = 49/399 (12%)

Query: 64  TQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDY 123
           T +     ++ A  +FD++  PD+ L+  M  GY+R+     A+ LF E+     + D  
Sbjct: 3   TDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMP----VKDVV 58

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           S+ S++K C       L   ++L           ++   TT+IN + +   +E A  +F 
Sbjct: 59  SWNSMIKGC--FDCADLTMARKL----FDEMPERSVVSWTTMINGFLQFGKIEVAEGLFY 112

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN----------------------- 220
            +    + ++N++I  Y  + R  + L LF+E+  RN                       
Sbjct: 113 KMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGL 172

Query: 221 ----------LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270
                     +KPT  T    +++CA   +L  G  IH ++ K G      ++ ALI  +
Sbjct: 173 FRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFY 232

Query: 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           A C +++D++ VF      +   W+A++  Y  + +   ++ +F EMM+  V P++ +F 
Sbjct: 233 ANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFT 292

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
             L +C     +D G    ++   K G+   +     ++ +  R G L++       +  
Sbjct: 293 SALNSCCGLEALDWG-REIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRIS- 350

Query: 391 KSTPILWRTLLSSCSSHN----NLGLAKQVIERIFELDD 425
           K   + W +++  C+ H      L    Q++  + E D+
Sbjct: 351 KKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDE 389



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 100/241 (41%), Gaps = 44/241 (18%)

Query: 20  NTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N  +  S L  C     L   ++IH   +K  L+ D+ V   LI          ++    
Sbjct: 287 NQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLI---VMYYRCGNLNDGV 343

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
           ++F RI + +IV +N++  G ++    + A+  F +++ S + PD+ +F  LL AC+  G
Sbjct: 344 VIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSG 403

Query: 137 AEALEEGKQLH-----------------CFAIKLGLNSNLYVCTTLIN------------ 167
               ++G+ L                  C    LG +  L     LI             
Sbjct: 404 MS--QKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWL 461

Query: 168 -LYAEC---SDVEAARRIFENIS--EP-CVVSYNAIITAYARSSRPNEALSLFRELQERN 220
            L + C   S +E A R  + I   EP C  +Y  +   YA +SR ++   + RE+++R 
Sbjct: 462 VLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRG 521

Query: 221 L 221
           +
Sbjct: 522 I 522


>gi|218186186|gb|EEC68613.1| hypothetical protein OsI_36980 [Oryza sativa Indica Group]
          Length = 981

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 200/536 (37%), Positives = 309/536 (57%), Gaps = 11/536 (2%)

Query: 22  PNAL---SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PN L   S L  C+S   L   K +HA+ ++  LQ +L V   LI   T     +SME A
Sbjct: 345 PNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLI---TMYGKCNSMEDA 401

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
             +F  +P  D+V +N +  GY+  +   +A+ +F  + ++G+ P+  +  ++       
Sbjct: 402 EKVFQSMPTHDVVSYNVLIGGYAVLEDGTKAMQVFSWIRSAGIKPNYITMINI-HGSFTS 460

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
             +    G+ LH + I+ G  S+ YV  +LI +YA+C ++E++  IF +I+   +VS+NA
Sbjct: 461 SNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNA 520

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           II A A+     EAL LF ++Q    K   V +   LSSCA L SL+ G  +H    K G
Sbjct: 521 IIAANAQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSG 580

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
           LD    V  A +DM+ KCG++++ + +  + + +  Q W+ +I  YA +G   ++   F+
Sbjct: 581 LDSDSYVVNAAMDMYGKCGKMNEMLQMVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFK 640

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
           +M+     PD +TF+ LL ACSH GLVD+G +Y+ SM   +G+ PGIKH  C+VDLLGR 
Sbjct: 641 QMVAMGRKPDYVTFVALLSACSHAGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRL 700

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
           GR  EA RFI+E+P+    ++WR+LLSS  +H NL + ++  +++ ELD      YV+LS
Sbjct: 701 GRFAEAERFIEEMPVLPNDLIWRSLLSSSRTHKNLEIGRKAAKKLLELDPFDDSAYVLLS 760

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           NL A   RW DVD LR  MK   + K P CS +++ N V  F  GD  H ++  +   LD
Sbjct: 761 NLYATNARWVDVDKLRSHMKTININKRPACSWLKLKNEVSTFGIGDRGHKHAEKIYAKLD 820

Query: 496 ELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
           E++ +L+ VGY+ DTS   H D ++E+KE  L  HSEKLA+ +GL+  P G+T ++
Sbjct: 821 EMLLKLREVGYIADTSSALH-DTDEEQKEQNLWNHSEKLALAYGLIVVPEGSTCQM 875



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 149/294 (50%), Gaps = 5/294 (1%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           Q+ +  I + LQN ++V   LI   T       ++ A  LFDR+ E D +  N M   YS
Sbjct: 166 QVASHVIVSGLQNQVSVANSLI---TMFGNLGRVQDAEKLFDRMEEHDTISRNAMISMYS 222

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
                 +   +F ++ + GL PD  +  SL+  CA   A+    G  +H   ++  L+S+
Sbjct: 223 HQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCA--SADHFSHGSGIHSLCLRSSLDSS 280

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
           + V   L+N+Y+    +  A  +F N+S   ++S+N +I++Y ++    +AL    +L  
Sbjct: 281 VTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFH 340

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
            N  P  +T  SAL +C+  G+L  GK +H  + +  L + + V  +LI M+ KC  ++D
Sbjct: 341 TNEIPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMED 400

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
           A  VF +M   D  +++ +I  YA    G K++ +F  +  A + P+ IT + +
Sbjct: 401 AEKVFQSMPTHDVVSYNVLIGGYAVLEDGTKAMQVFSWIRSAGIKPNYITMINI 454



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 162/350 (46%), Gaps = 6/350 (1%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           IHA+T +  L  ++ + T L++        S    A  LF  +PE ++V +  +    S 
Sbjct: 66  IHALTHRAGLMGNVYIGTALLHLYGSRGIVSD---ARRLFWEMPERNVVSWTALMVALSS 122

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
           +      +  + ++   G+  +  +F +++  C  +  E    G Q+    I  GL + +
Sbjct: 123 NGYLEETLRAYRQMRREGVPCNANAFATVVSLCGSLENEV--PGLQVASHVIVSGLQNQV 180

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
            V  +LI ++     V+ A ++F+ + E   +S NA+I+ Y+     ++   +F +++  
Sbjct: 181 SVANSLITMFGNLGRVQDAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMRHH 240

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
            L+P   T+ S +S CA       G  IH    +  LD  V V  AL++M++  G+L DA
Sbjct: 241 GLRPDATTLCSLMSVCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDA 300

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
             +F NMS +D  +W+ MI +Y  +     ++    ++      P+ +TF   L ACS  
Sbjct: 301 EFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSSP 360

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389
           G + +G    +++  +  +   +     ++ + G+   +++A +    +P
Sbjct: 361 GALIDG-KMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMP 409



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 154/347 (44%), Gaps = 7/347 (2%)

Query: 80  DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA-E 138
           DR P      + T   G  R    + A  L   +   G+    ++  SL+ AC   G  E
Sbjct: 3   DRTPST----WYTAVSGCVRCGRDVAAFELLRGMRERGVPLSGFALASLVTACERRGRDE 58

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
            +  G  +H    + GL  N+Y+ T L++LY     V  ARR+F  + E  VVS+ A++ 
Sbjct: 59  GIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDARRLFWEMPERNVVSWTALMV 118

Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
           A + +    E L  +R+++   +        + +S C  L +   G  +  ++   GL  
Sbjct: 119 ALSSNGYLEETLRAYRQMRREGVPCNANAFATVVSLCGSLENEVPGLQVASHVIVSGLQN 178

Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
            V V  +LI M    GR+ DA  +FD M   DT + +AMI  Y+  G   K  L+F +M 
Sbjct: 179 QVSVANSLITMFGNLGRVQDAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMR 238

Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
              + PD  T   L+  C+       G +  +S+  +  +   +     +V++   AG+L
Sbjct: 239 HHGLRPDATTLCSLMSVCASADHFSHG-SGIHSLCLRSSLDSSVTVINALVNMYSAAGKL 297

Query: 379 DEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
            +A  F+     +   I W T++SS   + N   A + + ++F  ++
Sbjct: 298 SDA-EFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNE 343


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 189/523 (36%), Positives = 307/523 (58%), Gaps = 9/523 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +QIH+  IKT+   ++ V   L++F +++    S+  A  LFD +PE D V +N +  GY
Sbjct: 230 QQIHSFVIKTNFVWNVFVSNALLDFYSKH---DSVIDARKLFDEMPEQDGVSYNVIISGY 286

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           +       A  LF EL  +      + F ++L   +       E G+Q+H   I    +S
Sbjct: 287 AWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIAS--NTLDWEMGRQIHAQTIVTTADS 344

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            + V  +L+++YA+C   E A  IF N++    V + A+I+AY +     E L LF +++
Sbjct: 345 EILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMR 404

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           + ++     T  S L + A + SL LGK +H +I K G    V   +AL+D++AKCG + 
Sbjct: 405 QASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIK 464

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           DAV  F  M  ++  +W+AMI AYA +G+   ++  F+EM+ + + PD ++FLG+L ACS
Sbjct: 465 DAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACS 524

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H+GLV+EG  +F SM   Y + P  +HY  +VD+L R+GR +EA + + E+PI    I+W
Sbjct: 525 HSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMW 584

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDD-SHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
            ++L++C  H N  LA++  +++F +++      YV +SN+ A AG+WE+V  + K M+D
Sbjct: 585 SSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRD 644

Query: 457 RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHG 516
           RGV K+P  S +E+ +    F + D  H    +++K +D L K ++ +GY PDTS   H 
Sbjct: 645 RGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHN 704

Query: 517 DMEDEEKEI-ALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             EDE+ ++ +L+YHSE+LAI F L++TP G+ I V+KNLR C
Sbjct: 705 --EDEKFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRAC 745



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 158/317 (49%), Gaps = 8/317 (2%)

Query: 87  IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQL 146
           +++ NT+   Y +S     A  LF E+       D ++F ++L  CA +G + +  G+Q+
Sbjct: 179 LIVGNTLVDSYCKSNRLDLACQLFKEMPE----IDSFTFAAVL--CANIGLDDIVLGQQI 232

Query: 147 HCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRP 206
           H F IK     N++V   L++ Y++   V  AR++F+ + E   VSYN II+ YA   + 
Sbjct: 233 HSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKH 292

Query: 207 NEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
             A  LFRELQ            + LS  +     ++G+ IH        D  + V  +L
Sbjct: 293 KYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSL 352

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           +DM+AKCG+ ++A  +F N++ +    W+AMI AY   G   + + +F +M +A V  D+
Sbjct: 353 VDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQ 412

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
            TF  LL A +    +  G    +S   K G +  +     ++D+  + G + +A +   
Sbjct: 413 ATFASLLRASASIASLSLG-KQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQ 471

Query: 387 ELPIKSTPILWRTLLSS 403
           E+P ++  + W  ++S+
Sbjct: 472 EMPDRNI-VSWNAMISA 487



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 101/427 (23%), Positives = 165/427 (38%), Gaps = 91/427 (21%)

Query: 22  PNALSLLPRCTSFRGLK----------QIHAVTIKTHLQNDLNVLTKLINFCTQN-PTTS 70
           PNAL  L   TS   L+           I A  +KT    D    T   NF   N     
Sbjct: 6   PNALQNLTSLTSLASLQSPKLRLNVVNNIDARIVKTGFDPD----TSRSNFRVGNFLKNG 61

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRS---------------KTPI----------- 104
            +  A  LF+++P  + V  N M  GY +S               +T +           
Sbjct: 62  ELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQ 121

Query: 105 -----RAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
                 A  LFV++   G  PD  +F +LL  C   G E   +  Q+    IKLG +S L
Sbjct: 122 LNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCN--GHEMGNQITQVQTQIIKLGYDSRL 179

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
            V  TL++                               +Y +S+R + A  LF+E+ E 
Sbjct: 180 IVGNTLVD-------------------------------SYCKSNRLDLACQLFKEMPEI 208

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
           +      T  + L +   L  + LG+ IH ++ K      V V+ AL+D ++K   + DA
Sbjct: 209 D----SFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDA 264

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
             +FD M  +D  +++ +I  YA  G+   +  +F E+        +  F  +L   S+T
Sbjct: 265 RKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNT 324

Query: 340 GLVDEGWNYFYSMRDKYGIVPG---IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
             +D  W     +  +  +      I     +VD+  + G+ +EA      L  +S  + 
Sbjct: 325 --LD--WEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSA-VP 379

Query: 397 WRTLLSS 403
           W  ++S+
Sbjct: 380 WTAMISA 386



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 95/232 (40%), Gaps = 44/232 (18%)

Query: 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
           +I  + K G L +A  +FD M  +    W+ +I  Y+   Q  ++  +F +M +    PD
Sbjct: 84  MISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPD 143

Query: 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI 385
            +TF+ LL  C+   + ++                 I      +  LG   RL       
Sbjct: 144 YVTFVTLLSGCNGHEMGNQ-----------------ITQVQTQIIKLGYDSRL------- 179

Query: 386 DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWE 445
                    I+  TL+ S    N L LA Q+ + + E+D      +   + LCA  G  +
Sbjct: 180 ---------IVGNTLVDSYCKSNRLDLACQLFKEMPEID-----SFTFAAVLCANIG-LD 224

Query: 446 DVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDEL 497
           D+   +++     V+K     ++ V+N + +F+S    H    D +K  DE+
Sbjct: 225 DIVLGQQI--HSFVIKTNFVWNVFVSNALLDFYSK---HDSVIDARKLFDEM 271


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 190/532 (35%), Positives = 305/532 (57%), Gaps = 7/532 (1%)

Query: 28  LPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDI 87
           +  CTS      IHA  IK+   +D  +  +L++   +       E A  LFD +P  D+
Sbjct: 149 ISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFK---LGYDEDAQRLFDEMPNRDL 205

Query: 88  VLFNTMARGYSRSKTPIRAIFLFVEL-LNSGLLPDDYSFPSLLKACACVGAEALEEGKQL 146
           V +N++  G S        +  F  +   SG  P++ +  S++ ACA +GA  L+EGK L
Sbjct: 206 VSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGA--LDEGKSL 263

Query: 147 HCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRP 206
           H   +KLG++    V  +LIN+Y +   ++AA ++FE +    +VS+N+++  +  +   
Sbjct: 264 HGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYA 323

Query: 207 NEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
            + + LF  ++   + P   TM++ L +C   G     + IH YI + G +  + + TAL
Sbjct: 324 EKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATAL 383

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           ++++AK GRL+ +  +F+ +  +DT AW+AM+  YA H  G ++I +F+ M+K  V  D 
Sbjct: 384 LNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDH 443

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
           +TF  LL ACSH+GLV+EG  YF  M + Y + P + HY CMVDLLGR+GRL++AY  I 
Sbjct: 444 VTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIK 503

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWED 446
            +P++ +  +W  LL +C  + N+ L K+V E++  LD S   +Y++LSN+ + AG W  
Sbjct: 504 SMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRX 563

Query: 447 VDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGY 506
              +R LMK+R + + PGCS IE  N +  F  GD +H  S ++   L+EL++++   G 
Sbjct: 564 ASKVRXLMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIXEAGC 623

Query: 507 VPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            P T  V H D+++E K   +  HSEKLAI FGLL T  G  + + KNLR+C
Sbjct: 624 APKTEFVLH-DIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRIC 674


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 212/588 (36%), Positives = 312/588 (53%), Gaps = 89/588 (15%)

Query: 6   SPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQ 65
           +P   Q+PP      +P+   L    ++    KQIHA  IKTH  + L +   L +F   
Sbjct: 72  NPTPLQTPP-----TSPSQHDL----STLEQTKQIHAHIIKTHFHHALQI--PLNDF--- 117

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSF 125
            P+  S           P      +N +   Y++   P  A+ ++ +L       D++  
Sbjct: 118 -PSGLS-----------PSAQ---WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMA 162

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYV------------------------ 161
           PS+LKAC  V    L  GK++H F +K GL+ +++V                        
Sbjct: 163 PSVLKACGQVSWTQL--GKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKM 220

Query: 162 -----------CTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEAL 210
                       T L+++YA+C  +  AR++F  +++  VVS+ A+I    RS+R  E  
Sbjct: 221 MERDVVSWIPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGT 280

Query: 211 SLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270
            LF  +QE N+ P ++TML+                      K  ++    +NTAL+DM+
Sbjct: 281 KLFIRMQEENIFPNEITMLN----------------------KERVEVDCILNTALVDMY 318

Query: 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           AKCG ++ A  +F     +D   W+A+I  +A HG G +++ +F EM +  V P++ITF+
Sbjct: 319 AKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFI 378

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
           GLL+ACSH GLV EG   F  M   +G+VP I+HYGCMVDLLGRAG LDEA+  I  +PI
Sbjct: 379 GLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPI 438

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL 450
           K   I+W  L+++C  H N  L +    ++ E++  + G  V++SN+ A A RW D   +
Sbjct: 439 KPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGV 498

Query: 451 RKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT 510
           RK MK  G+ K PG S IEVN  V EF  GD  H     + + L E+ ++L   GYVPDT
Sbjct: 499 RKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDT 558

Query: 511 SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           S V   ++++EEKE AL YHSEKLA+ FGL++T P T IR+VKNLRVC
Sbjct: 559 STVLL-NIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVC 605


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 185/524 (35%), Positives = 302/524 (57%), Gaps = 13/524 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           ++IHA    +    D  +   LI+ +C       S+  AH +FD++   D+V + ++  G
Sbjct: 71  RKIHAHLASSRFAGDAFLDNSLIHLYCK----CGSVVEAHKVFDKMRNKDMVSWTSLIAG 126

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           Y+++  P  AI L   +L     P+ ++F SLLKA        +  G Q+H  A+K   +
Sbjct: 127 YAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADSGI--GGQIHALAVKCDWH 184

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            ++YV + L+++YA C  ++ A  +F+ +     VS+NA+I+ +AR      AL +F E+
Sbjct: 185 EDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEM 244

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           Q    + T  T  S  S+ A +G+L+ GKW+H ++ K        V   ++DM+AK G +
Sbjct: 245 QRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGNTMLDMYAKSGSM 304

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
            DA  VF+ +  KD   W++M+ A+A +G G +++  FEEM K+ +  ++I+FL +L AC
Sbjct: 305 IDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQISFLCILTAC 364

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           SH GLV EG +YF  M  +Y + P I+HY  +VDLLGRAG L+ A  FI ++P++ T  +
Sbjct: 365 SHGGLVKEGKHYF-DMIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAV 423

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
           W  LL++C  H N  + +   + +F+LD    G  V+L N+ A  G W+    +RK+MK 
Sbjct: 424 WGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKA 483

Query: 457 RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTS--LVH 514
            GV K P CS +E+ N V  F + D  H  + ++ K  DE+  +++  GYVPD    L+H
Sbjct: 484 TGVKKEPACSWVEIENSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDYVLLH 543

Query: 515 HGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
              ++++E+E  L+YHSEK+A+ F L+  P G TIR++KN+R+C
Sbjct: 544 ---VDEQEREANLQYHSEKIALAFALIQMPAGATIRIMKNIRIC 584



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 161/315 (51%), Gaps = 10/315 (3%)

Query: 114 LNSG-LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172
           L+SG L P    + + + ACA   ++ L++ +++H          + ++  +LI+LY +C
Sbjct: 42  LDSGELAPTPRVYHAFITACA--QSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKC 99

Query: 173 SDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232
             V  A ++F+ +    +VS+ ++I  YA++  P EA+ L   + +   KP   T  S L
Sbjct: 100 GSVVEAHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLL 159

Query: 233 SSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ 292
            +        +G  IH    K    + V V +AL+DM+A+CG++D A +VFD +  K+  
Sbjct: 160 KAVGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGV 219

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYS 351
           +W+A+I  +A  G G  ++++F EM +        T+  +  A +  G +++G W + + 
Sbjct: 220 SWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHM 279

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
           ++ +  +   + +   M+D+  ++G + +A R + E  +    + W ++L++ + +   G
Sbjct: 280 IKSRQKLTAFVGN--TMLDMYAKSGSMIDA-RKVFERVLNKDLVTWNSMLTAFAQY---G 333

Query: 412 LAKQVIERIFELDDS 426
           L K+ +    E+  S
Sbjct: 334 LGKEAVSHFEEMRKS 348


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 186/541 (34%), Positives = 309/541 (57%), Gaps = 25/541 (4%)

Query: 26  SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S++  CT    ++   Q+H++ ++  L +D  V   L++   ++    +M++A+ +F+R+
Sbjct: 259 SMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERM 318

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIF-LFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           P+ D++ +  +  GY +S      +  LF E+LN  + P+  ++ S+LK+CA +     +
Sbjct: 319 PKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDH--D 376

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE----PCVVSYNAII 197
            G+Q+H   IK    S   V   L+++YAE   +E ARR+F  + E    PC+       
Sbjct: 377 SGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIPCITE----- 431

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
                         L   +   ++  +  T  S +S+ A +G L  G+ +H    K G  
Sbjct: 432 ---------GRDFPLDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFG 482

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
               V+ +L+ M+++CG L+DA   F+ +  ++  +W++MI   A HG   +++ +F +M
Sbjct: 483 SDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDM 542

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
           +   V P+++T++ +L ACSH GLV EG  YF SM+  +G++P ++HY CMVDLL R+G 
Sbjct: 543 ILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGI 602

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437
           + EA  FI+E+P+K+  ++W+TLL +C SH+N+ + +   + + EL+      YV+LSNL
Sbjct: 603 VKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNL 662

Query: 438 CARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDEL 497
            A AG W++V  +R  M+D  + K  G S +EV N   EF +GD  H  + D+   LD L
Sbjct: 663 YADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTL 722

Query: 498 VKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRV 557
           V+++K +GYVPDTS+V H DM DE KE  L  HSEK+A+ FGL+ T     IR+ KNLRV
Sbjct: 723 VRQIKGMGYVPDTSIVLH-DMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRV 781

Query: 558 C 558
           C
Sbjct: 782 C 782



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 194/414 (46%), Gaps = 40/414 (9%)

Query: 2   ATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDL-------- 53
           +T P  P + +  P L ++ P+ +S L    +  G  ++     +  L+ DL        
Sbjct: 28  STFPRYPRSLAAHPALSSSHPSDVSALLAAAARAGDLRLGRALHRRLLRGDLLDRDAVVA 87

Query: 54  NVLTKLINFCTQNPTTSSMEHAHLLFDRIPE-PDIVLFNTMARGYSRSKTPIRAIFLFVE 112
           N L  L + C       ++  A  +FD +    DIV +  MA   +R+     ++ L  E
Sbjct: 88  NSLLTLYSRC------GAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLIGE 141

Query: 113 LLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAI--------KLGL-NSNLYVCT 163
           +L SGLLP+ Y+  +   AC            +L+C           K+GL  +++ V +
Sbjct: 142 MLESGLLPNAYTLCAAAHACF---------PHELYCLVGGVVLGLVHKMGLWGTDVAVGS 192

Query: 164 TLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKP 223
            LI++ A   D+ +AR++F+ + E  VV +  +I+ Y +     EA+ LF +  E   +P
Sbjct: 193 ALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEP 252

Query: 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG---RLDDAV 280
              TM S +S+C  LGS+ LG  +H    + GL     V+  L+DM+AK      +D A 
Sbjct: 253 DRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYAN 312

Query: 281 SVFDNMSGKDTQAWSAMIVAYATHG-QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
            VF+ M   D  +W+A+I  Y   G Q +K + +F EM+   + P+ IT+  +L +C+  
Sbjct: 313 KVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCASI 372

Query: 340 GLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
              D G   + + ++        + +   +V +   +G ++EA R  ++L  +S
Sbjct: 373 SDHDSGRQVHAHVIKSNQASAHTVGN--ALVSMYAESGCMEEARRVFNQLYERS 424


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 175/472 (37%), Positives = 276/472 (58%), Gaps = 33/472 (6%)

Query: 68  TTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPS 127
           +   ++ A  +FD+    D+V +N+M  GY R      A+  + E+   G+ PD+ +   
Sbjct: 154 SCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIG 213

Query: 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE 187
           ++ +CA +  E L+ G++ HC+  + GL   + +   L+++Y +C ++E+AR++F++++ 
Sbjct: 214 VVSSCAQL--EDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTN 271

Query: 188 PCVVSY-------------------------------NAIITAYARSSRPNEALSLFREL 216
             +VS+                               NA+I  Y  ++R  EAL+LF E+
Sbjct: 272 KTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEM 331

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           Q  N+ P +VTM+S LS+C+ LG+LD+G WIH YI+K+ L   V + TALIDM+AKCG++
Sbjct: 332 QAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKI 391

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
             A+ VF  + G+++  W+A+I   A HG  H +I  F EM+   V PDE+TFLGLL AC
Sbjct: 392 TKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSAC 451

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
            H GLV+EG  YF  M  K+ + P +KHY CMVDLLGRAG L+EA   I  +PI++  ++
Sbjct: 452 CHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVV 511

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
           W  L  +C  H N+ + ++   ++ ++D    G YV+L+N+   A  W++    RKLM+ 
Sbjct: 512 WGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQ 571

Query: 457 RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVP 508
           RGV K PGCSSIEVN +V EF   D  H  S  + + L +L ++L++V   P
Sbjct: 572 RGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLIQLTRQLELVECTP 623



 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 128/418 (30%), Positives = 218/418 (52%), Gaps = 39/418 (9%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           LSLL +C S   LKQI +  + T L  D    ++LI FC  +         ++LF+    
Sbjct: 10  LSLLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFN-TRN 68

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLN-SGLLPDDYSFPSLLKACACVGAEALEEG 143
           P+   +N   RG+  S+ P  A+ L+  +L   G  PD+Y++P L KACA +    +  G
Sbjct: 69  PNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARL--SLIRMG 126

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
            ++    + LG +S+++V   +I+L   C D++ AR++F+      +VS+N++I  Y R 
Sbjct: 127 SEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRR 186

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
               EAL+ +RE++   +KP +VTM+  +SSCA L  LDLG+  H YI++ GL   V + 
Sbjct: 187 GWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLA 246

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG------------------ 305
            AL+DM+ KCG L+ A  +FD+M+ K   +W+ M+V YA  G                  
Sbjct: 247 NALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVV 306

Query: 306 -------------QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYS 351
                        +G +++ +F EM    ++PDE+T +  L ACS  G +D G W + Y 
Sbjct: 307 PWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYI 366

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
             +K+ +   +     ++D+  + G++ +A +   ELP +++ + W  ++S  + H N
Sbjct: 367 --EKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNS-LTWTAIISGLALHGN 421



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 10/303 (3%)

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA--ECSDVEAARRIF 182
           F SLL+ C     +++ + KQ+    +  GL  + +  + LI   A  E  D++    I 
Sbjct: 9   FLSLLEKC-----KSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNIL 63

Query: 183 ENISEPCVVSYNAIITAYARSSRPNEALSLF-RELQERNLKPTDVTMLSALSSCALLGSL 241
            N   P   S+N  I  +  S  P EA+ L+ R LQ    KP + T      +CA L  +
Sbjct: 64  FNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLI 123

Query: 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
            +G  I  ++   G D  + V+ A+I +   CG LD A  +FD    +D  +W++MI  Y
Sbjct: 124 RMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGY 183

Query: 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG 361
              G  ++++  + EM    + PDE+T +G++ +C+    +D G    +   ++ G+   
Sbjct: 184 VRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLG-RESHCYIEENGLKLT 242

Query: 362 IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421
           +     ++D+  + G L+ A +  D +  K T + W T++   +    L +A ++ + + 
Sbjct: 243 VPLANALMDMYMKCGNLESARKLFDSMTNK-TMVSWTTMVVGYAQSGLLDMAWKLFDEMP 301

Query: 422 ELD 424
           + D
Sbjct: 302 DKD 304


>gi|224074129|ref|XP_002304264.1| predicted protein [Populus trichocarpa]
 gi|222841696|gb|EEE79243.1| predicted protein [Populus trichocarpa]
          Length = 499

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 185/465 (39%), Positives = 274/465 (58%), Gaps = 13/465 (2%)

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA----CACVGAEALEEGKQLHCFAIKLGL 155
           S +P    F++ E+   GL  D  S   +++     C+ +G      G+Q+H   +  G 
Sbjct: 2   SSSPTEGFFMYQEMRKKGLRADPVSLSFVIRCYIRICSLIG------GEQVHARILSDGH 55

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
            S+  + T L++LY+ C     A ++F+ + +   +++N +I+ Y R+ R  + L +F  
Sbjct: 56  QSDSLLLTNLMDLYSLCDKGSEACKVFDEMRQRDTIAWNVLISCYMRNRRTRDVLVIFDG 115

Query: 216 L--QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273
           +   E   +P DVT L  L +CA LG+L+ G+ +H +I + G D    +  +LI M+++ 
Sbjct: 116 MLSGELGCEPDDVTCLLLLQACANLGALEFGEKVHGHIVERGYDNATNLCNSLIAMYSQF 175

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
           G LD A  VF  M  K+   WSA+I   A +G G ++I  FEEM+K  V PD++TF G+L
Sbjct: 176 GNLDKAFGVFKGMHNKNVVTWSAIISGLAMNGYGREAIGAFEEMLKMGVLPDDLTFTGVL 235

Query: 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
            ACS+ GLVD+G   F  M  ++GIVP I HYGCMVDLLGRAG+L +AY+ I  + +K  
Sbjct: 236 SACSNCGLVDKGMIIFARMSKEFGIVPNIHHYGCMVDLLGRAGQLHQAYQLIMSMRVKPD 295

Query: 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKL 453
             +WRTLL +C  H N+ L + V+E + EL     GDYV+L NL +    W+ V  LRK 
Sbjct: 296 STIWRTLLGACRIHRNVILGEHVVEHLIELKAQEAGDYVLLFNLYSSVDNWKKVTELRKF 355

Query: 454 MKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLV 513
           MK++G+   P  SSIE+   V EF   D  H    ++ + LDE+ K+LK+ GYV + +  
Sbjct: 356 MKEKGIQTTPASSSIELKGKVHEFVVDDVSHPQKDEIYEMLDEISKQLKIAGYVAEIT-S 414

Query: 514 HHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
              +++ EEK   L YHSEKLAI FG+L TPPGTTIR+ KNLR+C
Sbjct: 415 ELPNLDAEEKRYVLSYHSEKLAIAFGVLATPPGTTIRIAKNLRIC 459



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 174/348 (50%), Gaps = 25/348 (7%)

Query: 1   MATTPSPP--ITQSPPPKLCTNTPNALSLLPRC----TSFRGLKQIHAVTIKTHLQNDLN 54
           M+++P+    + Q    K     P +LS + RC     S  G +Q+HA  +    Q+D  
Sbjct: 1   MSSSPTEGFFMYQEMRKKGLRADPVSLSFVIRCYIRICSLIGGEQVHARILSDGHQSDSL 60

Query: 55  VLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL 114
           +LT L++  +     S    A  +FD + + D + +N +   Y R++     + +F  +L
Sbjct: 61  LLTNLMDLYSLCDKGSE---ACKVFDEMRQRDTIAWNVLISCYMRNRRTRDVLVIFDGML 117

Query: 115 NS--GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172
           +   G  PDD +   LL+ACA +GA  LE G+++H   ++ G ++   +C +LI +Y++ 
Sbjct: 118 SGELGCEPDDVTCLLLLQACANLGA--LEFGEKVHGHIVERGYDNATNLCNSLIAMYSQF 175

Query: 173 SDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232
            +++ A  +F+ +    VV+++AII+  A +    EA+  F E+ +  + P D+T    L
Sbjct: 176 GNLDKAFGVFKGMHNKNVVTWSAIISGLAMNGYGREAIGAFEEMLKMGVLPDDLTFTGVL 235

Query: 233 SSCALLGSLDLGKWIHEYI-KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-D 290
           S+C+  G +D G  I   + K++G+   +     ++D+  + G+L  A  +  +M  K D
Sbjct: 236 SACSNCGLVDKGMIIFARMSKEFGIVPNIHHYGCMVDLLGRAGQLHQAYQLIMSMRVKPD 295

Query: 291 TQAWSAMIVAYATHGQGHKSILMFEEM------MKAQVSPDEITFLGL 332
           +  W  ++ A       H+++++ E +      +KAQ + D +    L
Sbjct: 296 STIWRTLLGACRI----HRNVILGEHVVEHLIELKAQEAGDYVLLFNL 339


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 195/509 (38%), Positives = 287/509 (56%), Gaps = 24/509 (4%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRS-----------KTPIRAIFLFVELLN----S 116
           ++ AH LFD+IPEPD V +N M   Y RS           K P++ I  +  L++    +
Sbjct: 121 VKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQN 180

Query: 117 GLLPDDYSFPSLLKACACVGAEALEEGKQLHC-------FAIKLGLNSNLYVCTTLINLY 169
           G +   +   S++     V   A+  G   H            +G+ S + V T ++  Y
Sbjct: 181 GQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKS-VVVETAMLTGY 239

Query: 170 AECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTML 229
            +   VE A RIF+ ++   +V++N++I  Y  + R  + L +F+ + E  ++P  +++ 
Sbjct: 240 MKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLS 299

Query: 230 SALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK 289
           S L  C+ L +L LG+ +H+ + K  L K     T+LI M+ KCG LD A  +F  M  K
Sbjct: 300 SVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRK 359

Query: 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYF 349
           D   W+AMI  YA HG G K++ +F++M    + PD ITF+ ++ AC+H G VD G  YF
Sbjct: 360 DVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYF 419

Query: 350 YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
            SM+ ++GI     HY C++DLLGRAGRLDEA   I E+P      ++ TLL +C  H N
Sbjct: 420 KSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKN 479

Query: 410 LGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIE 469
           L LA+     +  LD +    YV L+N+ A   +W+ V  +RK+MK+  V+K+PG S IE
Sbjct: 480 LDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIE 539

Query: 470 VNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRY 529
           + +V  EF S D +H   T + K L+EL  ++K+ GYVPD     H D+E+E KE  L +
Sbjct: 540 IKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALH-DVEEEHKEKLLLW 598

Query: 530 HSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           HSEKLAI FGL+ T PGT IRV KNLRVC
Sbjct: 599 HSEKLAIAFGLMKTAPGTPIRVFKNLRVC 627



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/367 (20%), Positives = 155/367 (42%), Gaps = 40/367 (10%)

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           +  S ++AC    A  + E         K+ + + +   T L         V+ A  +F+
Sbjct: 79  TIASFVRACDLESARNVFE---------KMSVRTTVTWNTMLSGYTKVAGKVKEAHELFD 129

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
            I EP  VSYN ++  Y RS     AL+ F ++  +++   +  +     +  +  + DL
Sbjct: 130 KIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDL 189

Query: 244 G---------KW---IHEYIKKYGLD-----------KYVKVNTALIDMHAKCGRLDDAV 280
                      W   I  Y++   L+           K V V TA++  + K G+++ A 
Sbjct: 190 FSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAE 249

Query: 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG 340
            +F  M+ K+   W++MI  Y  + +    + +F+ M++++V P+ ++   +L  CS+  
Sbjct: 250 RIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLS 309

Query: 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400
            +  G    + +  K  +         ++ +  + G LD A++   E+P K   I W  +
Sbjct: 310 ALPLG-RQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDV-ITWNAM 367

Query: 401 LSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL---CARAGRWE-DVDYLRKLMKD 456
           +S  + H     A  + +++   + +   D++    +   C  AG  +  V Y + + K+
Sbjct: 368 ISGYAQHGAGRKALHLFDKM--RNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKE 425

Query: 457 RGVLKVP 463
            G+   P
Sbjct: 426 FGIEAKP 432


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 201/550 (36%), Positives = 306/550 (55%), Gaps = 20/550 (3%)

Query: 20  NTPNALSLLP---RCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N+   + +LP   +  S R  K+IH   ++     D+ V T +++   +      +++A 
Sbjct: 219 NSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGK---CQCIDYAR 275

Query: 77  LLFDRIP-EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDY------SFPSLL 129
            +FD +    + V ++ M   Y        A+ LF +LL   +L DD       +  +++
Sbjct: 276 RIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLL---MLKDDVIVLSAVTLATVI 332

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC 189
           + CA      L  G  LHC+AIK G   +L V  TL+++YA+C  +  A R F  +    
Sbjct: 333 RVCA--NLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRD 390

Query: 190 VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
            VS+ AII+ Y ++    E L +F E+Q   + P   T+ S L +CA L  L  G   H 
Sbjct: 391 AVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHC 450

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
           Y    G      +  ALIDM+AKCG++D A  VFD M  +   +W+ MI+AY  HG G +
Sbjct: 451 YAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLE 510

Query: 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369
           ++L+F+ M    + PD++TF+ L+ ACSH+GLV EG  +F +M   +GI+P ++HY CMV
Sbjct: 511 ALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMV 570

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429
           DLL RAG   E + FI+++P++    +W  LLS+C  + N+ L + V ++I +L     G
Sbjct: 571 DLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTG 630

Query: 430 DYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGD-GVHSYST 488
           ++V+LSN+ +  GRW+D   +R   K++G  K PGCS IE++ VV  F  G    H   T
Sbjct: 631 NFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQLT 690

Query: 489 DLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTT 548
            +   LDEL+ E+K +GY  ++S V   D+E+EEKE  L YHSEKLAI FG+L+  P   
Sbjct: 691 QISNKLDELLVEMKRLGYQAESSYVFQ-DVEEEEKERVLLYHSEKLAIAFGILSLSPDKH 749

Query: 549 IRVVKNLRVC 558
           I V KNLRVC
Sbjct: 750 IIVTKNLRVC 759



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 189/369 (51%), Gaps = 16/369 (4%)

Query: 34  FRGLKQIHAVTIK----THLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE--PDI 87
           FRG K IH   +K    TH  N  N               S ++ A  +FD++P    ++
Sbjct: 26  FRG-KLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARHVFDKMPHRPKNV 84

Query: 88  VLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLH 147
           VL+N + R Y+ +     AI L+ ++L  G+ P+ ++FP +LKAC+ +  +   EG+++H
Sbjct: 85  VLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSAL--KEASEGREIH 142

Query: 148 CFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA-RSSRP 206
           C   +L L SN+YV T L++ YA+C  ++ A+ +F+ + +  VV++N++I+ ++      
Sbjct: 143 CDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSY 202

Query: 207 NEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
           +E   L  ++Q  ++ P   T++  L + A + SL  GK IH +  + G    V V T +
Sbjct: 203 DEVARLLVQMQN-DVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGI 261

Query: 267 IDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ---V 322
           +D++ KC  +D A  +FD M   K+   WSAM+ AY       +++ +F +++  +   +
Sbjct: 262 LDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVI 321

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
               +T   ++  C++   +  G    +    K G V  +     ++ +  + G ++ A 
Sbjct: 322 VLSAVTLATVIRVCANLTDLSTG-TCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAM 380

Query: 383 RFIDELPIK 391
           RF +E+ ++
Sbjct: 381 RFFNEMDLR 389



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 152/312 (48%), Gaps = 14/312 (4%)

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTT-------LINLYAECSDVEAARRIFENI 185
           +C+ +++L  GK +H   +K    ++    T        L++LY  CS+++ AR +F+ +
Sbjct: 18  SCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARHVFDKM 77

Query: 186 SE--PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
                 VV +N +I AYA +    EA+ L+ ++    + P   T    L +C+ L     
Sbjct: 78  PHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEASE 137

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303
           G+ IH  IK+  L+  V V+TAL+D +AKCG LDDA  VFD M  +D  AW++MI  ++ 
Sbjct: 138 GREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSL 197

Query: 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK 363
           H   +  +      M+  VSP+  T +G+L A +    +  G    +    + G V  + 
Sbjct: 198 HEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHG-KEIHGFCVRRGFVGDVV 256

Query: 364 HYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
               ++D+ G+   +D A R  D + I    + W  ++ +    + +  A ++  ++  L
Sbjct: 257 VGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLML 316

Query: 424 DDSHGGDYVILS 435
            D    D ++LS
Sbjct: 317 KD----DVIVLS 324



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 113/274 (41%), Gaps = 48/274 (17%)

Query: 232 LSSCALLGSLDLGKWIHEYIKK-------YGLDKYVKVNTALIDMHAKCGRLDDAVSVFD 284
           L SC    SL  GK IH+++ K         L  +      L+D++  C  L  A  VFD
Sbjct: 16  LESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARHVFD 75

Query: 285 NM--SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342
            M    K+   W+ +I AYA +G   ++I ++ +M+   ++P+  TF  +L ACS     
Sbjct: 76  KMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEA 135

Query: 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
            EG      ++ +  +   +     +VD   + G LD+A    D++  K   + W +++S
Sbjct: 136 SEGREIHCDIK-RLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMH-KRDVVAWNSMIS 193

Query: 403 SCSSHNNLGLAKQVIERIFELDDS----------------------HG------------ 428
             S H   G   +V   + ++ +                       HG            
Sbjct: 194 GFSLHE--GSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGF 251

Query: 429 -GDYVILSNLCARAGRWEDVDYLRKLMKDRGVLK 461
            GD V+ + +    G+ + +DY R++    G++K
Sbjct: 252 VGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVK 285


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 195/547 (35%), Positives = 319/547 (58%), Gaps = 16/547 (2%)

Query: 15  PKLCTNTPNALSLLPRCTSF---RGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSS 71
           P L T T    S++  C +    R  +++H   IKT    +++V   LI     + +   
Sbjct: 294 PDLMTMT----SVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQM---HSSVGC 346

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
            + A ++F ++   D+V +  M  GY ++  P +A+  +  + + G++PD+ +  S+L A
Sbjct: 347 WDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSA 406

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           CA +G   L++G  LH FA + GL S + V  +LI++Y++C  ++ A  +F  I    V+
Sbjct: 407 CAGLGL--LDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVI 464

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+ +II     + R  EAL  F+++   +LKP  VT++S LS+CA +G+L  GK IH + 
Sbjct: 465 SWTSIILGLRLNYRSFEALFFFQQMI-LSLKPNSVTLVSVLSACARIGALSCGKEIHAHA 523

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            + GL     +  AL+DM+ +CGR++ A + F N   KD  +W+ ++  YA  G+G  ++
Sbjct: 524 LRTGLGFDGFLPNALLDMYVRCGRMEPAWNQF-NSCEKDVASWNILLTGYAQQGKGGLAV 582

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +F +M+++ V+PDEITF  LL ACS +G+V +G  YF SM  K+ I P +KHY  +VDL
Sbjct: 583 ELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDL 642

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
           LGRAGRL++AY FI ++PI   P +W  LL++C  + N+ L +   + IFE+D    G Y
Sbjct: 643 LGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYY 702

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           ++L NL A +G+W++V  +RK+M++  +   PGCS +EV   V  F +GD  H    ++ 
Sbjct: 703 ILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEIN 762

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
             L+   ++++  G +  +      D++  + EI    HSE+LAI FGL+NT PGT I V
Sbjct: 763 AVLEGFYEKMEATG-LSMSKDSRRDDIDASKAEIFCG-HSERLAIAFGLINTVPGTPIWV 820

Query: 552 VKNLRVC 558
            KNL +C
Sbjct: 821 TKNLYMC 827



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 174/327 (53%), Gaps = 4/327 (1%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +F ++ E D+  +N +  GY+++     A+ L+  +L  G+ PD Y+FP +L+ C  
Sbjct: 148 AWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCG- 206

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
            G   L  G+++H   I+ G  S++ V   LI +Y +C D+ +AR +F+ +     +S+N
Sbjct: 207 -GLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWN 265

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           A+I+ Y  +    E L LF  ++E  + P  +TM S +S+C  LG   LG+ +H Y+ K 
Sbjct: 266 AMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKT 325

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
           G    V VN +LI MH+  G  D+A  VF  M  KD  +W+AMI  Y  +G   K++  +
Sbjct: 326 GFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETY 385

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
             M    V PDEIT   +L AC+  GL+D+G    +   D+ G+   +     ++D+  +
Sbjct: 386 TIMEHEGVVPDEITIASVLSACAGLGLLDKG-IMLHEFADRTGLTSYVIVANSLIDMYSK 444

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLL 401
              +D+A      +P K+  I W +++
Sbjct: 445 CRCIDKALEVFHRIPNKNV-ISWTSII 470



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 110/414 (26%), Positives = 219/414 (52%), Gaps = 21/414 (5%)

Query: 35  RGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMA 94
           RG +++H   I+   ++D++V+  LI   T       +  A L+FDR+P  D + +N M 
Sbjct: 213 RG-REVHLHVIRYGFESDVDVVNALI---TMYVKCGDIFSARLVFDRMPRRDRISWNAMI 268

Query: 95  RGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
            GY  +   +  + LF  +    + PD  +  S++ AC  +G E L  G+++H + IK G
Sbjct: 269 SGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERL--GREVHGYVIKTG 326

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
             + + V  +LI +++     + A  +F  +    +VS+ A+I+ Y ++  P +A+  + 
Sbjct: 327 FVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYT 386

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
            ++   + P ++T+ S LS+CA LG LD G  +HE+  + GL  YV V  +LIDM++KC 
Sbjct: 387 IMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCR 446

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
            +D A+ VF  +  K+  +W+++I+    + +  +++  F++M+ + + P+ +T + +L 
Sbjct: 447 CIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLS 505

Query: 335 ACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID--ELPIK 391
           AC+  G +  G   + +++R   G    + +   ++D+  R GR++ A+   +  E  + 
Sbjct: 506 ACARIGALSCGKEIHAHALRTGLGFDGFLPN--ALLDMYVRCGRMEPAWNQFNSCEKDVA 563

Query: 392 STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL---CARAG 442
           S    W  LL+  +     GLA ++  ++ E D +   D +  ++L   C+R+G
Sbjct: 564 S----WNILLTGYAQQGKGGLAVELFHKMIESDVN--PDEITFTSLLCACSRSG 611



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 149/324 (45%), Gaps = 9/324 (2%)

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           ++ ++ +LL+ C      A  EG ++H +  K      + +   L++++    D+  A  
Sbjct: 93  EEETYIALLRLCEW--KRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWY 150

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
           +F  ++E  + S+N ++  YA++   +EAL+L+  +    ++P   T    L +C  L  
Sbjct: 151 VFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPD 210

Query: 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVA 300
           L  G+ +H ++ +YG +  V V  ALI M+ KCG +  A  VFD M  +D  +W+AMI  
Sbjct: 211 LARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISG 270

Query: 301 YATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP 360
           Y  +    + + +F  M +  V PD +T   ++ AC   G    G    +    K G V 
Sbjct: 271 YFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLG-REVHGYVIKTGFVA 329

Query: 361 GIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE-- 418
            +     ++ +    G  DEA     ++  K   + W  ++   S +   GL ++ +E  
Sbjct: 330 EVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDL-VSWTAMI---SGYEKNGLPEKAVETY 385

Query: 419 RIFELDDSHGGDYVILSNLCARAG 442
            I E +     +  I S L A AG
Sbjct: 386 TIMEHEGVVPDEITIASVLSACAG 409



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 91/212 (42%), Gaps = 8/212 (3%)

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           N++I          +AL     +QE  +   + T ++ L  C    +   G  +H Y+ K
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
                 V++  AL+ M  + G L +A  VF  M+ +D  +W+ ++  YA  G   +++ +
Sbjct: 123 TVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNL 182

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN---YFYSMRDKYGIVPGIKHYGCMVD 370
           +  M+   + PD  TF  +L  C   GL D       + + +R  YG    +     ++ 
Sbjct: 183 YHRMLWVGIRPDVYTFPCVLRTCG--GLPDLARGREVHLHVIR--YGFESDVDVVNALIT 238

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
           +  + G +  A    D +P +   I W  ++S
Sbjct: 239 MYVKCGDIFSARLVFDRMP-RRDRISWNAMIS 269


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 194/505 (38%), Positives = 287/505 (56%), Gaps = 22/505 (4%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSR-----------SKTPIRAIFLFVELLN----SGLL 119
           A  LFDR+P  D++ +NTM  GY++           +++PIR +F +  +++    +G++
Sbjct: 220 ARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMV 279

Query: 120 PDDYSFPSLLKACACVGAEALEEGK-QLHCFAIKLGLNS-----NLYVCTTLINLYAECS 173
            +   +   +     +   A+  G  Q     I   L       N+    T+I  Y +  
Sbjct: 280 DEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNG 339

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
            +  AR++F+ + +   VS+ AII+ YA++    EAL++F E++         T   ALS
Sbjct: 340 GIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALS 399

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
           +CA + +L+LGK +H  + K G +    V  AL+ M+ KCG  D+A  VF+ +  KD  +
Sbjct: 400 TCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVS 459

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           W+ MI  YA HG G +++++FE M KA V PDEIT +G+L ACSH+GL+D G  YFYSM 
Sbjct: 460 WNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMD 519

Query: 354 DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413
             Y + P  KHY CM+DLLGRAGRL+EA   +  +P       W  LL +   H N  L 
Sbjct: 520 RDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELG 579

Query: 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNV 473
           ++  E +F+++  + G YV+LSNL A +GRW DV  +R  M++ GV KV G S +EV N 
Sbjct: 580 EKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNK 639

Query: 474 VREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEK 533
           +  F  GD  H     +   L+EL  +++  GYV  T LV H D+E+EEKE  L+YHSEK
Sbjct: 640 IHTFSVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLH-DVEEEEKEHMLKYHSEK 698

Query: 534 LAITFGLLNTPPGTTIRVVKNLRVC 558
           LA+ FG+L  P G  IRV+KNLRVC
Sbjct: 699 LAVAFGILTIPAGRPIRVMKNLRVC 723



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 160/370 (43%), Gaps = 46/370 (12%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSK--TPIRAIFLFVELLNS----GLLPDDYSFPSL 128
           AH LFD +P+ D+V +N M  GY+++      R +F  +   NS    GLL        L
Sbjct: 127 AHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRL 186

Query: 129 LKACACVGAEALEEGKQLHCFA---IK---LGLNSNLY---------VCTTLINLYAECS 173
            +A     +++  E    +C     +K   LG    L+            T+I+ YA+  
Sbjct: 187 KEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVG 246

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
           D+  A+R+F       V ++ A+++ Y ++   +EA   F E+  +N    +++  + L+
Sbjct: 247 DLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKN----EISYNAMLA 302

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
                  + +   + E +    +  +      +I  + + G +  A  +FD M  +D  +
Sbjct: 303 GYVQYKKMVIAGELFEAMPCRNISSW----NTMITGYGQNGGIAQARKLFDMMPQRDCVS 358

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           W+A+I  YA +G   +++ MF EM +   S +  TF   L  C+    ++ G       +
Sbjct: 359 WAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELG-------K 411

Query: 354 DKYG-IVPGIKHYGCMVD--LLG---RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
             +G +V      GC V   LLG   + G  DEA    + +  K   + W T+++  + H
Sbjct: 412 QVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDV-VSWNTMIAGYARH 470

Query: 408 NNLGLAKQVI 417
              G  +Q +
Sbjct: 471 ---GFGRQAL 477



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 121/274 (44%), Gaps = 32/274 (11%)

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           +L+    ++  Y     +  A ++F+ + +  VVS+NA+++ YA++   +EA  +F ++ 
Sbjct: 107 DLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMP 166

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
            RN     ++    L++    G L   + + E    + L  +      L+  + K   L 
Sbjct: 167 HRN----SISWNGLLAAYVHNGRLKEARRLFESQSNWELISW----NCLMGGYVKRNMLG 218

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP--DEITFLGLLYA 335
           DA  +FD M  +D  +W+ MI  YA  G   ++  +F E      SP  D  T+  ++  
Sbjct: 219 DARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNE------SPIRDVFTWTAMVSG 272

Query: 336 CSHTGLVDEGWNYFYSMRDKYGI-----VPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
               G+VDE   YF  M  K  I     + G   Y  MV     AG L EA      +P 
Sbjct: 273 YVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVI----AGELFEA------MPC 322

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
           ++    W T+++    +  +  A+++ + + + D
Sbjct: 323 RNISS-WNTMITGYGQNGGIAQARKLFDMMPQRD 355



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 108/242 (44%), Gaps = 49/242 (20%)

Query: 176 EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSC 235
           ++A R+F ++     VSYNA+I+ Y R+++ + A  LF ++ ER+L   +V         
Sbjct: 63  DSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPERDLFSWNVM-------- 114

Query: 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWS 295
                               L  YV+             RL +A  +FD M  KD  +W+
Sbjct: 115 --------------------LTGYVRNR-----------RLGEAHKLFDLMPKKDVVSWN 143

Query: 296 AMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355
           AM+  YA +G   ++  +F +M       + I++ GLL A  H G + E    F S +  
Sbjct: 144 AMLSGYAQNGFVDEAREVFNKM----PHRNSISWNGLLAAYVHNGRLKEARRLFES-QSN 198

Query: 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQ 415
           + ++     + C++    +   L +A +  D +P++   I W T++S  +   +L  AK+
Sbjct: 199 WELIS----WNCLMGGYVKRNMLGDARQLFDRMPVRDV-ISWNTMISGYAQVGDLSQAKR 253

Query: 416 VI 417
           + 
Sbjct: 254 LF 255



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 81/167 (48%), Gaps = 13/167 (7%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           KQ+H   +K   +    V   L+    +  +T   + A+ +F+ I E D+V +NTM  GY
Sbjct: 411 KQVHGQVVKAGFETGCFVGNALLGMYFKCGST---DEANDVFEGIEEKDVVSWNTMIAGY 467

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN- 156
           +R     +A+ LF  +  +G+ PD+ +   +L AC+  G   ++ G + + +++    N 
Sbjct: 468 ARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSG--LIDRGTE-YFYSMDRDYNV 524

Query: 157 ---SNLYVCTTLINLYAECSDVEAARRIFENIS-EPCVVSYNAIITA 199
              S  Y C  +I+L      +E A  +  N+  +P   S+ A++ A
Sbjct: 525 KPTSKHYTC--MIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGA 569


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 195/547 (35%), Positives = 319/547 (58%), Gaps = 16/547 (2%)

Query: 15  PKLCTNTPNALSLLPRCTSF---RGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSS 71
           P L T T    S++  C +    R  +++H   IKT    +++V   LI     + +   
Sbjct: 294 PDLMTMT----SVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQM---HSSVGC 346

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
            + A ++F ++   D+V +  M  GY ++  P +A+  +  + + G++PD+ +  S+L A
Sbjct: 347 WDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSA 406

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           CA +G   L++G  LH FA + GL S + V  +LI++Y++C  ++ A  +F  I    V+
Sbjct: 407 CAGLGL--LDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVI 464

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+ +II     + R  EAL  F+++   +LKP  VT++S LS+CA +G+L  GK IH + 
Sbjct: 465 SWTSIILGLRLNYRSFEALFFFQQMI-LSLKPNSVTLVSVLSACARIGALSCGKEIHAHA 523

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            + GL     +  AL+DM+ +CGR++ A + F N   KD  +W+ ++  YA  G+G  ++
Sbjct: 524 LRTGLGFDGFLPNALLDMYVRCGRMEPAWNQF-NSCEKDVASWNILLTGYAQQGKGGLAV 582

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +F +M+++ V+PDEITF  LL ACS +G+V +G  YF SM  K+ I P +KHY  +VDL
Sbjct: 583 ELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDL 642

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
           LGRAGRL++AY FI ++PI   P +W  LL++C  + N+ L +   + IFE+D    G Y
Sbjct: 643 LGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYY 702

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           ++L NL A +G+W++V  +RK+M++  +   PGCS +EV   V  F +GD  H    ++ 
Sbjct: 703 ILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEIN 762

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
             L+   ++++  G +  +      D++  + EI    HSE+LAI FGL+NT PGT I V
Sbjct: 763 AVLEGFYEKMEATG-LSMSKDSRRDDIDASKAEIFCG-HSERLAIAFGLINTVPGTPIWV 820

Query: 552 VKNLRVC 558
            KNL +C
Sbjct: 821 TKNLYMC 827



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 174/327 (53%), Gaps = 4/327 (1%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +F ++ E D+  +N +  GY+++     A+ L+  +L  G+ PD Y+FP +L+ C  
Sbjct: 148 AWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCG- 206

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
            G   L  G+++H   I+ G  S++ V   LI +Y +C D+ +AR +F+ +     +S+N
Sbjct: 207 -GLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWN 265

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           A+I+ Y  +    E L LF  ++E  + P  +TM S +S+C  LG   LG+ +H Y+ K 
Sbjct: 266 AMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKT 325

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
           G    V VN +LI MH+  G  D+A  VF  M  KD  +W+AMI  Y  +G   K++  +
Sbjct: 326 GFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETY 385

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
             M    V PDEIT   +L AC+  GL+D+G    +   D+ G+   +     ++D+  +
Sbjct: 386 TIMEHEGVVPDEITIASVLSACAGLGLLDKG-IMLHEFADRTGLTSYVIVANSLIDMYSK 444

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLL 401
              +D+A      +P K+  I W +++
Sbjct: 445 CRCIDKALEVFHRIPNKNV-ISWTSII 470



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 111/418 (26%), Positives = 220/418 (52%), Gaps = 21/418 (5%)

Query: 35  RGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMA 94
           RG +++H   I+   ++D++V+  LI   T       +  A L+FDR+P  D + +N M 
Sbjct: 213 RG-REVHLHVIRYGFESDVDVVNALI---TMYVKCGDIFSARLVFDRMPRRDRISWNAMI 268

Query: 95  RGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
            GY  +   +  + LF  +    + PD  +  S++ AC  +G E L  G+++H + IK G
Sbjct: 269 SGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERL--GREVHGYVIKTG 326

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
             + + V  +LI +++     + A  +F  +    +VS+ A+I+ Y ++  P +A+  + 
Sbjct: 327 FVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYT 386

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
            ++   + P ++T+ S LS+CA LG LD G  +HE+  + GL  YV V  +LIDM++KC 
Sbjct: 387 IMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCR 446

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
            +D A+ VF  +  K+  +W+++I+    + +  +++  F++M+ + + P+ +T + +L 
Sbjct: 447 CIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLS 505

Query: 335 ACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID--ELPIK 391
           AC+  G +  G   + +++R   G    + +   ++D+  R GR++ A+   +  E  + 
Sbjct: 506 ACARIGALSCGKEIHAHALRTGLGFDGFLPN--ALLDMYVRCGRMEPAWNQFNSCEKDVA 563

Query: 392 STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL---CARAGRWED 446
           S    W  LL+  +     GLA ++  ++ E D +   D +  ++L   C+R+G   D
Sbjct: 564 S----WNILLTGYAQQGKGGLAVELFHKMIESDVN--PDEITFTSLLCACSRSGMVTD 615



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 149/324 (45%), Gaps = 9/324 (2%)

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           ++ ++ +LL+ C      A  EG ++H +  K      + +   L++++    D+  A  
Sbjct: 93  EEETYIALLRLCE--WKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWY 150

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
           +F  ++E  + S+N ++  YA++   +EAL+L+  +    ++P   T    L +C  L  
Sbjct: 151 VFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPD 210

Query: 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVA 300
           L  G+ +H ++ +YG +  V V  ALI M+ KCG +  A  VFD M  +D  +W+AMI  
Sbjct: 211 LARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISG 270

Query: 301 YATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP 360
           Y  +    + + +F  M +  V PD +T   ++ AC   G    G    +    K G V 
Sbjct: 271 YFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLG-REVHGYVIKTGFVA 329

Query: 361 GIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE-- 418
            +     ++ +    G  DEA     ++  K   + W  ++   S +   GL ++ +E  
Sbjct: 330 EVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDL-VSWTAMI---SGYEKNGLPEKAVETY 385

Query: 419 RIFELDDSHGGDYVILSNLCARAG 442
            I E +     +  I S L A AG
Sbjct: 386 TIMEHEGVVPDEITIASVLSACAG 409



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 91/212 (42%), Gaps = 8/212 (3%)

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           N++I          +AL     +QE  +   + T ++ L  C    +   G  +H Y+ K
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
                 V++  AL+ M  + G L +A  VF  M+ +D  +W+ ++  YA  G   +++ +
Sbjct: 123 TVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNL 182

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN---YFYSMRDKYGIVPGIKHYGCMVD 370
           +  M+   + PD  TF  +L  C   GL D       + + +R  YG    +     ++ 
Sbjct: 183 YHRMLWVGIRPDVYTFPCVLRTCG--GLPDLARGREVHLHVIR--YGFESDVDVVNALIT 238

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
           +  + G +  A    D +P +   I W  ++S
Sbjct: 239 MYVKCGDIFSARLVFDRMP-RRDRISWNAMIS 269


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 194/525 (36%), Positives = 305/525 (58%), Gaps = 17/525 (3%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSS---MEHAHLLFDRIPEPDIVLFNTMA 94
           +QIH   ++T    D ++   LI      P  SS   +E A  +F R    D+V +  M 
Sbjct: 328 RQIHGYVLRTEFGRDPSIHNSLI------PMYSSVGLIEEAETVFSRTECRDLVSWTAMI 381

Query: 95  RGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
            GY     P +A+  +  +   G++PD+ +   +L AC+C+    L+ G  LH  A + G
Sbjct: 382 SGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCN--LDMGMNLHEVAKQKG 439

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           L S   V  +LI++YA+C  ++ A  IF +  E  +VS+ +II     ++R  EAL  FR
Sbjct: 440 LVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFR 499

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
           E+  R LKP  VT++  LS+CA +G+L  GK IH +  + G+     +  A++DM+ +CG
Sbjct: 500 EMIRR-LKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCG 558

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
           R++ A   F ++   +  +W+ ++  YA  G+G  +  +F+ M+++ VSP+E+TF+ +L 
Sbjct: 559 RMEYAWKQFFSVD-HEVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILC 617

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           ACS +G+V EG  YF SM+ KY I+P +KHY C+VDLLGR+G+L+EAY FI ++P+K  P
Sbjct: 618 ACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDP 677

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454
            +W  LL+SC  H+++ L +   E IF+ D +  G Y++LSNL A  G+W+ V  +RK+M
Sbjct: 678 AVWGALLNSCRIHHHVELGELAAENIFQDDTTSVGYYILLSNLYADNGKWDKVAEVRKMM 737

Query: 455 KDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYV-PDTSLV 513
           +  G++  PGCS +EV   V  F S D  H    ++   L+   K++K  G   P++S  
Sbjct: 738 RQNGLIVDPGCSWVEVKGTVHAFLSSDNFHPQIKEINALLERFYKKMKEAGVEGPESS-- 795

Query: 514 HHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            H D+ +  K      HSE+LAI FGL+N+ PG  I V KNL +C
Sbjct: 796 -HMDIMEASKADIFCGHSERLAIVFGLINSGPGMPIWVTKNLYMC 839



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 185/372 (49%), Gaps = 12/372 (3%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +F R+ + ++  +N +  GY+++     A+ L+  +L  G+ PD Y+FP +L+ C  
Sbjct: 160 AWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCG- 218

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
            G   L  G+++H   I+ G  S++ V   LI +Y +C DV  AR +F+ +     +S+N
Sbjct: 219 -GMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWN 277

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           A+I+ Y  +    E L LF  + +  + P  +TM S +++C LLG   LG+ IH Y+ + 
Sbjct: 278 AMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRT 337

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
              +   ++ +LI M++  G +++A +VF     +D  +W+AMI  Y       K++  +
Sbjct: 338 EFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETY 397

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
           + M    + PDEIT   +L ACS    +D G N  + +  + G+V        ++D+  +
Sbjct: 398 KMMEAEGIMPDEITIAIVLSACSCLCNLDMGMN-LHEVAKQKGLVSYSIVANSLIDMYAK 456

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN----LGLAKQVIERIFELDDSHGGD 430
              +D+A        ++   + W +++     +N     L   +++I R+      +   
Sbjct: 457 CKCIDKALEIFHS-TLEKNIVSWTSIILGLRINNRCFEALFFFREMIRRL----KPNSVT 511

Query: 431 YVILSNLCARAG 442
            V + + CAR G
Sbjct: 512 LVCVLSACARIG 523



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 134/262 (51%), Gaps = 5/262 (1%)

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           +D ++ +L++ C      A +EG +++ +      + +L +   L++++    ++  A  
Sbjct: 105 EDDAYVALIRLCE--WKRARKEGSRVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAWY 162

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
           +F  + +  + S+N ++  YA++   +EAL L+  +    +KP   T    L +C  + +
Sbjct: 163 VFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPN 222

Query: 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVA 300
           L  G+ IH ++ +YG +  V V  ALI M+ KCG ++ A  VFD M  +D  +W+AMI  
Sbjct: 223 LVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISG 282

Query: 301 YATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIV 359
           Y  +G   + + +F  M+K  V PD +T   ++ AC   G    G   + Y +R ++G  
Sbjct: 283 YFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRD 342

Query: 360 PGIKHYGCMVDLLGRAGRLDEA 381
           P I  +  ++ +    G ++EA
Sbjct: 343 PSI--HNSLIPMYSSVGLIEEA 362



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/196 (19%), Positives = 83/196 (42%), Gaps = 2/196 (1%)

Query: 207 NEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
           + A+S    + E  +   D   ++ +  C    +   G  ++ Y+        +++  AL
Sbjct: 88  DRAMSYLDSMHELRIPVEDDAYVALIRLCEWKRARKEGSRVYSYVSISMSHLSLQLGNAL 147

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           + M  + G L DA  VF  M  ++  +W+ ++  YA  G   +++ ++  M+   V PD 
Sbjct: 148 LSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDV 207

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
            TF  +L  C     +  G    +    +YG    +     ++ +  + G ++ A    D
Sbjct: 208 YTFPCVLRTCGGMPNLVRG-REIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFD 266

Query: 387 ELPIKSTPILWRTLLS 402
           ++P +   I W  ++S
Sbjct: 267 KMPNRDR-ISWNAMIS 281


>gi|15228954|ref|NP_191214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180975|sp|Q9LXY5.1|PP284_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56550
 gi|7594533|emb|CAB88058.1| putative protein [Arabidopsis thaliana]
 gi|91806586|gb|ABE66020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646013|gb|AEE79534.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 581

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 188/544 (34%), Positives = 308/544 (56%), Gaps = 5/544 (0%)

Query: 17  LCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           +C      + +L  C S + L++IH+  I   LQ+  ++   L+ FC  +  T S+ HA 
Sbjct: 1   MCEKARVIVRMLQGCNSMKKLRKIHSHVIINGLQHHPSIFNHLLRFCAVS-VTGSLSHAQ 59

Query: 77  LLFDRI-PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL-LPDDYSFPSLLKACAC 134
           LLFD    +P    +N + RG+S S +P+ +I  +  +L S +  PD ++F   LK+C  
Sbjct: 60  LLFDHFDSDPSTSDWNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCER 119

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           +  +++ +  ++H   I+ G   +  V T+L+  Y+    VE A ++F+ +    +VS+N
Sbjct: 120 I--KSIPKCLEIHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWN 177

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
            +I  ++     N+ALS+++ +    +     T+++ LSSCA + +L++G  +H      
Sbjct: 178 VMICCFSHVGLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDI 237

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
             +  V V+ ALIDM+AKCG L++A+ VF+ M  +D   W++MI+ Y  HG G ++I  F
Sbjct: 238 RCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFF 297

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
            +M+ + V P+ ITFLGLL  CSH GLV EG  +F  M  ++ + P +KHYGCMVDL GR
Sbjct: 298 RKMVASGVRPNAITFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGR 357

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
           AG+L+ +   I        P+LWRTLL SC  H NL L +  ++++ +L+  + GDYV++
Sbjct: 358 AGQLENSLEMIYASSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLM 417

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
           +++ + A   +    +RKL++   +  VPG S IE+ + V +F   D +H  S  +   L
Sbjct: 418 TSIYSAANDAQAFASMRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSEL 477

Query: 495 DELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
            E++    + GY P+ S      + D     A   HSEKLAI +GL+ T  GTT+R+ KN
Sbjct: 478 GEVINRAILAGYKPEDSNRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKN 537

Query: 555 LRVC 558
           LRVC
Sbjct: 538 LRVC 541


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 190/521 (36%), Positives = 308/521 (59%), Gaps = 6/521 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K IH  ++KT    + +V   L++   +      +E AH +F+ IP  D++L++ +   Y
Sbjct: 269 KGIHGCSVKTLYDTEPHVGGALLDMYAK---CGDIEDAHAIFEMIPHDDVILWSFLISRY 325

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           ++S    +A  +F+ ++ S ++P+++S   +L+ACA +    LE G+Q+H  AIKLG  S
Sbjct: 326 AQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAF--LELGEQIHNLAIKLGYES 383

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            L+V   L+++YA+C ++E +  IF ++ +   VS+N II  Y +S    +ALS+F E++
Sbjct: 384 ELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMR 443

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
             ++  T VT  S L +CA   S+     IH  I+K   +    V  +LID +AKCG + 
Sbjct: 444 AAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIR 503

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           DA+ VF+++   D  +W+++I AYA HG+   ++ +F+ M K+ +  +++TF+ LL  C 
Sbjct: 504 DALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCG 563

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
            TGLV++G   F SM   + I P ++HY C+V LLGRAGRL +A +FI ++P   +P++W
Sbjct: 564 STGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVW 623

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
           R LLSSC  H N+ L +   E++ +++      YV+LSN+ A AG  ++V   RK M++ 
Sbjct: 624 RALLSSCVVHKNVALGRYAAEKVLDIEPHDETTYVLLSNMYAAAGILDEVALWRKSMRNV 683

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           GV K  G S +E+   V  F  G   H     +   L+ L  +    GYVPD ++V H D
Sbjct: 684 GVKKEAGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWLNLKASREGYVPDINVVLH-D 742

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +++EEK   L  HSE+LA+ +GL  TPPG  IR++KNLR C
Sbjct: 743 VDEEEKARMLWVHSERLALAYGLSMTPPGHPIRIMKNLRSC 783



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 201/404 (49%), Gaps = 8/404 (1%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           IHA   K     +  V T LI+         ++ HA  +FD I   D V +  M   YS 
Sbjct: 170 IHACACKLGHDRNAFVGTALID---AYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSE 226

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
           +  P  A+  F ++  +G  P+ +   S LKA  C+ +  L  GK +H  ++K   ++  
Sbjct: 227 NDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALL--GKGIHGCSVKTLYDTEP 284

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
           +V   L+++YA+C D+E A  IFE I    V+ ++ +I+ YA+S +  +A  +F  +   
Sbjct: 285 HVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRS 344

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
            + P + ++   L +CA +  L+LG+ IH    K G +  + V  AL+DM+AKC  ++++
Sbjct: 345 FVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENS 404

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
           + +F ++   +  +W+ +IV Y   G    ++ +F EM  A +   ++TF  +L AC++T
Sbjct: 405 LEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANT 464

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRT 399
             +       +S+ +K            ++D   + G + +A +  + + ++   + W +
Sbjct: 465 SSIKHAVQ-IHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESI-VECDVVSWNS 522

Query: 400 LLSSCSSHNNLGLAKQVIERIFELD-DSHGGDYVILSNLCARAG 442
           ++S+ + H     A ++ +R+ + D  ++   +V L ++C   G
Sbjct: 523 IISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTG 566



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 113/407 (27%), Positives = 191/407 (46%), Gaps = 17/407 (4%)

Query: 27  LLPRCTS---FRGLKQIHAVTIKTH--LQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
            L RC +    R  + +HA  ++     Q D      L+NF  +      +  A  LFD 
Sbjct: 51  FLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAK---LGPLATARRLFDG 107

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +PE + V F T+ +GY+       A+ LF  L   G   + +   ++LK    + A  L 
Sbjct: 108 MPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLA 167

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G  +H  A KLG + N +V T LI+ Y+ C  V  AR +F+ I     V++ A+++ Y+
Sbjct: 168 CG--IHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYS 225

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
            +  P  AL+ F +++    KP    + SAL +   L S  LGK IH    K   D    
Sbjct: 226 ENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPH 285

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V  AL+DM+AKCG ++DA ++F+ +   D   WS +I  YA   Q  ++  MF  MM++ 
Sbjct: 286 VGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSF 345

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           V P+E +  G+L AC++   ++ G    +++  K G    +     ++D+  +   ++ +
Sbjct: 346 VVPNEFSLSGVLQACANIAFLELG-EQIHNLAIKLGYESELFVGNALMDMYAKCRNMENS 404

Query: 382 YRFIDELPIKSTPILWRTLLSS-CSSHNNLGLAKQVIERIFELDDSH 427
                 L   +  + W T++   C S    G A+  +    E+  +H
Sbjct: 405 LEIFSSLQ-DANEVSWNTIIVGYCQS----GFAEDALSVFHEMRAAH 446



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 111/274 (40%), Gaps = 51/274 (18%)

Query: 6   SPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQ 65
           S  +T S   + C NT          +S +   QIH++  K+   ND  V   LI+    
Sbjct: 449 STQVTFSSVLRACANT----------SSIKHAVQIHSLIEKSTFNNDTIVCNSLID---T 495

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSF 125
                 +  A  +F+ I E D+V +N++   Y+       A+ LF  +  S +  +D +F
Sbjct: 496 YAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVTF 555

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
            SLL  C   G                  +N  L++  ++               + ++ 
Sbjct: 556 VSLLSVCGSTGL-----------------VNQGLWLFNSM---------------MMDHR 583

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245
            +P +  Y  I+    R+ R  +AL    ++      P+ +   + LSSC +  ++ LG+
Sbjct: 584 IKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPS---TPSPMVWRALLSSCVVHKNVALGR 640

Query: 246 WIHEYIKKYGLDKYVKVNTALI-DMHAKCGRLDD 278
           +  E  K   ++ + +    L+ +M+A  G LD+
Sbjct: 641 YAAE--KVLDIEPHDETTYVLLSNMYAAAGILDE 672


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 198/511 (38%), Positives = 287/511 (56%), Gaps = 28/511 (5%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTM------------ARGYSRSKTPIRAIFLFVELLNS--- 116
            E+A  LF++IP+P+ V +N M            ARG+  S  P++ +  +  ++++   
Sbjct: 89  FEYARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDS-MPLKDVASWNTMISALAQ 147

Query: 117 -GLLPDDYSFPSLLKACACVGAEALEEG--------KQLHCFAIKLGLNSNLYVCTTLIN 167
            GL+ +     S +    CV   A+  G          + CF        ++   T +I 
Sbjct: 148 VGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYA--APMRSVITWTAMIT 205

Query: 168 LYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT 227
            Y +   VE A R+F+ +S   +V++NA+I  Y  + R  + L LFR + E  +KP  ++
Sbjct: 206 GYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALS 265

Query: 228 MLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS 287
           + S L  C+ L +L LGK +H+ + K  L       T+L+ M++KCG L DA  +F  + 
Sbjct: 266 LTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIP 325

Query: 288 GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN 347
            KD   W+AMI  YA HG G K++ +F+EM K  + PD ITF+ +L AC+H GLVD G  
Sbjct: 326 RKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQ 385

Query: 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
           YF +MR  +GI    +HY CMVDLLGRAG+L EA   I  +P K  P ++ TLL +C  H
Sbjct: 386 YFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIH 445

Query: 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSS 467
            NL LA+   + + ELD +    YV L+N+ A   RW+ V  +R+ MKD  V+K+PG S 
Sbjct: 446 KNLNLAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSW 505

Query: 468 IEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIAL 527
           IE+N+VV  F S D +H     + + L +L K++K+ GYVPD   V H D+ +E KE  L
Sbjct: 506 IEINSVVHGFRSSDRLHPELASIHEKLKDLEKKMKLAGYVPDLEFVLH-DVGEELKEQLL 564

Query: 528 RYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +HSEKLAI FGLL  P G  IRV KNLRVC
Sbjct: 565 LWHSEKLAIAFGLLKVPLGVPIRVFKNLRVC 595



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 150/369 (40%), Gaps = 67/369 (18%)

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNE-ALSLFR 214
           N+N+     LI  Y  C D+++A R+FE++     V++N+I+ A+A+     E A  LF 
Sbjct: 38  NNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFE 97

Query: 215 ELQERNLKPTDV------------------------------TMLSALSSCALLGS---- 240
           ++ + N    ++                              TM+SAL+   L+G     
Sbjct: 98  KIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRL 157

Query: 241 ---------LDLGKWIHEYIKKYGLDKYVK-----------VNTALIDMHAKCGRLDDAV 280
                    +     +  Y+    LD  V+             TA+I  + K GR++ A 
Sbjct: 158 FSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYMKFGRVELAE 217

Query: 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG 340
            +F  MS +    W+AMI  Y  +G+    + +F  M++  V P+ ++   +L  CS+  
Sbjct: 218 RLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLS 277

Query: 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400
            +  G    + +  K  +         +V +  + G L +A+    ++P K   + W  +
Sbjct: 278 ALQLG-KQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDV-VCWNAM 335

Query: 401 LSSCSSHNNLGLAKQVIERIFELDDSHG--GDYVILSNL---CARAGRWE-DVDYLRKLM 454
           +S  + H   G  K+ + R+F+     G   D++    +   C  AG  +  V Y   + 
Sbjct: 336 ISGYAQH---GAGKKAL-RLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMR 391

Query: 455 KDRGVLKVP 463
           +D G+   P
Sbjct: 392 RDFGIETKP 400



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 9/121 (7%)

Query: 22  PNALSL---LPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PNALSL   L  C++   L   KQ+H +  K  L +D    T L++  ++      ++ A
Sbjct: 261 PNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSK---CGDLKDA 317

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
             LF +IP  D+V +N M  GY++     +A+ LF E+   GL PD  +F ++L AC   
Sbjct: 318 WELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHA 377

Query: 136 G 136
           G
Sbjct: 378 G 378


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  351 bits (901), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 203/551 (36%), Positives = 313/551 (56%), Gaps = 10/551 (1%)

Query: 11   QSPPPKLCTNTPNALSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNP 67
            Q     L  ++   LSLL    S   L+   ++H   ++T L +D  V +  I+   +  
Sbjct: 514  QMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIR-- 571

Query: 68   TTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPS 127
               S++ A LLFD++    +  +N M  G ++ +    A+ LF+++   G +PD  +F +
Sbjct: 572  -CGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFIN 630

Query: 128  LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE 187
            +L A   V  EALE  K++H  A   GL  +L V   L++ Y++C +V+ A+++F+++ E
Sbjct: 631  ILSAN--VDEEALEWVKEVHSHATDAGL-VDLRVGNALVHTYSKCGNVKYAKQVFDDMVE 687

Query: 188  PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
              V ++  +I   A+    ++A S F ++    + P   T +S LS+CA  G+L+  K +
Sbjct: 688  RNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEV 747

Query: 248  HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQG 307
            H +    GL   ++V  AL+ M+AKCG +DDA SVFD+M  +D  +W+ MI   A HG+G
Sbjct: 748  HNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRG 807

Query: 308  HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367
             +++  F +M      P+  +++ +L ACSH GLVDEG   F SM   YGI P ++HY C
Sbjct: 808  LEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTC 867

Query: 368  MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
            MVDLLGRAG L+EA  FI  +PI+     W  LL +C ++ NL +A+   +   +L    
Sbjct: 868  MVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKS 927

Query: 428  GGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYS 487
               YV+LSN+ A  G+WE    +R +M+ +G+ K PG S IEV+N +  F  GD  H  S
Sbjct: 928  ASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSHPES 987

Query: 488  TDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGT 547
             ++   L++L++ LK  GYVPDT LV   + + E KE AL  HSEKLAI +GL++T    
Sbjct: 988  KEIYAQLNDLIERLKAKGYVPDTRLVLR-NTDQEHKEQALCSHSEKLAIVYGLMHTQSKD 1046

Query: 548  TIRVVKNLRVC 558
             IRV KNLRVC
Sbjct: 1047 PIRVYKNLRVC 1057



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 195/381 (51%), Gaps = 10/381 (2%)

Query: 25  LSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           +++L RC     +   KQ+H   IK+ ++ +L V  KL+    +      ++ A  +FD+
Sbjct: 122 VNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIR---CGRLQCARQVFDK 178

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           + + +I ++ TM  GY+       A+ ++ ++      P++ ++ S+LKAC C     L+
Sbjct: 179 LLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCC--PVNLK 236

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            GK++H   I+ G  S++ V T L+N+Y +C  +E A+ IF+ + E  V+S+  +I   A
Sbjct: 237 WGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLA 296

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
              R  EA  LF ++Q     P   T +S L++ A  G+L+  K +H +    GL   ++
Sbjct: 297 HYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLR 356

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V  AL+ M+AK G +DDA  VFD M+ +D  +W+ MI   A HG+G ++  +F +M +  
Sbjct: 357 VGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNG 416

Query: 322 VSPDEITFLGLLYACSHTGLVDEGW-NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
             P+  T+L +L A +        W    +   ++ G +  ++    ++ +  + G +D+
Sbjct: 417 CLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDD 476

Query: 381 AYRFIDELPIKSTPILWRTLL 401
           A    D +  +   I W  ++
Sbjct: 477 ARLVFDGMCDRDV-ISWNAMM 496



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 165/302 (54%), Gaps = 9/302 (2%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           +K++H+  +   L  DL V   L++   +   + S++ A ++FD + E DI  +  M  G
Sbjct: 339 VKEVHSHAVNAGLALDLRVGNALVHMYAK---SGSIDDARVVFDGMTERDIFSWTVMIGG 395

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
            ++      A  LF+++  +G LP+  ++ S+L A A     ALE  K +H  A + G  
Sbjct: 396 LAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFI 455

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
           S+L +   LI++YA+C  ++ AR +F+ + +  V+S+NA++   A++   +EA ++F ++
Sbjct: 456 SDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQM 515

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWI---HEYIKKYGLDKYVKVNTALIDMHAKC 273
           Q+  L P   T LS L++    GS D  +W+   H++  + GL    +V +A I M+ +C
Sbjct: 516 QQEGLVPDSTTYLSLLNT---HGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRC 572

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
           G +DDA  +FD +S +    W+AMI   A    G +++ +F +M +    PD  TF+ +L
Sbjct: 573 GSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINIL 632

Query: 334 YA 335
            A
Sbjct: 633 SA 634



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 158/308 (51%), Gaps = 6/308 (1%)

Query: 102 TPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYV 161
           T   A+ +    +  G+  D +S+ ++L+ C  +  E +   KQ+H   IK G+  NLYV
Sbjct: 98  TAKDAVAMLKIRVQQGIAIDSFSYVNILQRC--LKQEDILLAKQVHVCIIKSGMEQNLYV 155

Query: 162 CTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNL 221
              L+ +Y  C  ++ AR++F+ + +  +  +  +I  YA      +A+ ++ ++++   
Sbjct: 156 ANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECG 215

Query: 222 KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVS 281
           +P ++T LS L +C    +L  GK IH +I + G    V+V TAL++M+ KCG ++DA  
Sbjct: 216 QPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQL 275

Query: 282 VFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341
           +FD M  ++  +W+ MI   A +G+G ++  +F +M +    P+  T++ +L A +  G 
Sbjct: 276 IFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGA 335

Query: 342 VDEGW-NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400
           ++  W    +S     G+   ++    +V +  ++G +D+A    D +  +     W  +
Sbjct: 336 LE--WVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDI-FSWTVM 392

Query: 401 LSSCSSHN 408
           +   + H 
Sbjct: 393 IGGLAQHG 400


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 193/511 (37%), Positives = 304/511 (59%), Gaps = 44/511 (8%)

Query: 89  LFNTMARGYSRS-KTPIR--AIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
           L+N + R    +  +P R   I +++ + N  + PD ++FP LL +        L  G++
Sbjct: 26  LWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFH--NPLHLPLGQR 83

Query: 146 LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS- 204
            H   +  GL+ + +V T+L+N+Y+ C D+ +A+R+F++     + ++N+++ AYA++  
Sbjct: 84  THAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGL 143

Query: 205 ------------------------------RPNEALSLFRELQ-----ERNLKPTDVTML 229
                                         +  EAL LFRE+Q     E  ++P + TM 
Sbjct: 144 IDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMS 203

Query: 230 SALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM-SG 288
           + LS+C  LG+L+ GKW+H YI KY ++  + + TALIDM+AKCG L+ A  VF+ + S 
Sbjct: 204 TVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSK 263

Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKA-QVSPDEITFLGLLYACSHTGLVDEGWN 347
           KD +A+SAMI   A +G   +   +F EM  +  ++P+ +TF+G+L AC H GL++EG +
Sbjct: 264 KDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKS 323

Query: 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
           YF  M +++GI P I+HYGCMVDL GR+G + EA  FI  +P++   ++W +LLS     
Sbjct: 324 YFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRML 383

Query: 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSS 467
            ++   +  ++R+ ELD  + G YV+LSN+ A+ GRW +V  +R  M+ +G+ KVPGCS 
Sbjct: 384 GDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSY 443

Query: 468 IEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIAL 527
           +EV  VV EF  GD     S  +   LDE+++ L+  GYV DT  V   D+ +++KEIAL
Sbjct: 444 VEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLL-DLNEKDKEIAL 502

Query: 528 RYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            YHSEKLAI F L+ T PGT +R++KNLR+C
Sbjct: 503 SYHSEKLAIAFCLMKTRPGTPVRIIKNLRIC 533



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 126/236 (53%), Gaps = 11/236 (4%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL-----NSGLLPDDYSFP 126
           ++ A  LFD +PE +++ ++ +  GY        A+ LF E+       + + P++++  
Sbjct: 144 IDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMS 203

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI- 185
           ++L AC  +GA  LE+GK +H +  K  +  ++ + T LI++YA+C  +E A+R+F  + 
Sbjct: 204 TVLSACGRLGA--LEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALG 261

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFRELQER-NLKPTDVTMLSALSSCALLGSLDLG 244
           S+  V +Y+A+I   A     +E   LF E+    N+ P  VT +  L +C   G ++ G
Sbjct: 262 SKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEG 321

Query: 245 K-WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMI 298
           K +    I+++G+   ++    ++D++ + G + +A S   +M  + D   W +++
Sbjct: 322 KSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLL 377


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 205/544 (37%), Positives = 313/544 (57%), Gaps = 14/544 (2%)

Query: 22  PNAL---SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PN     S+L  CTS   L   +QIH   IKT  Q ++ V + LI+   +      +  A
Sbjct: 461 PNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAK---YGQLALA 517

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
             +  R+PE D+V +  M  GY +      A+ LF E+   G+  D+  F S + ACA  
Sbjct: 518 LRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACA-- 575

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
           G  AL +G+Q+H  +   G  ++L +   LI+LYA C  ++ A   FE I +   +S+N+
Sbjct: 576 GIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNS 635

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           +++  A+S    EAL +F  +     +    T  SA+S+ A L ++  G+ IH  + K G
Sbjct: 636 LVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTG 695

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
            D   +V+ +LI ++AK G + DA   F++MS ++  +W+AMI  Y+ HG G +++ +FE
Sbjct: 696 YDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFE 755

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
           EM    + P+ +TF+G+L ACSH GLV EG +YF SM   + +VP  +HY C+VDLLGRA
Sbjct: 756 EMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRA 815

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
           G+LD A  +I E+PI +  ++WRTLLS+C  H N+ + ++    + EL+      YV++S
Sbjct: 816 GQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLIS 875

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           N+ A + +W   D+ RKLMKD GV K PG S IEV N V  F++GD +H  +  + + + 
Sbjct: 876 NIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIG 935

Query: 496 ELVKELKMVGYVPDT-SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
            L +    +GYV D+ SL++  + E  +K+     HSEKLAI FGLL+      IRV+KN
Sbjct: 936 HLNRRTSEIGYVQDSFSLLN--ESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKN 993

Query: 555 LRVC 558
           LRVC
Sbjct: 994 LRVC 997



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/412 (28%), Positives = 204/412 (49%), Gaps = 10/412 (2%)

Query: 13  PPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSM 72
           P P + ++    LS   +   F   +Q+H + IK    ++  V   L+   +++    S 
Sbjct: 259 PTPYVLSSV---LSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISA 315

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
           E    +F  +   D V +N++  G  +     RA+ LF ++    L PD  +  SLL AC
Sbjct: 316 ER---IFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSAC 372

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
           A VGA  L +G QLH  AIK G+++++ +  +L++LY++C+DVE A + F       +V 
Sbjct: 373 ASVGA--LHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVL 430

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +N ++ AY +    +++  +FR++Q   + P   T  S L +C  LG+L LG+ IH ++ 
Sbjct: 431 WNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVI 490

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           K G    V V + LIDM+AK G+L  A+ +   +   D  +W+AMI  Y  H    +++ 
Sbjct: 491 KTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQ 550

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           +FEEM    +  D I F   + AC+    + +G    ++     G    +     ++ L 
Sbjct: 551 LFEEMEYRGIQFDNIGFASAISACAGIRALRQG-QQIHAQSYAAGFGADLSINNALISLY 609

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
            R GR+ EAY   +++  K+  I W +L+S  +       A QV  R+   +
Sbjct: 610 ARCGRIQEAYLAFEKIGDKNN-ISWNSLVSGLAQSGYFEEALQVFVRMLRTE 660



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 172/344 (50%), Gaps = 5/344 (1%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           +FD      +  +N M   +   K+  +   LF  +L  G+ P+ Y+F  +LKAC  VG 
Sbjct: 115 VFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKAC--VGG 172

Query: 138 E-ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
           + A    KQ+H      G +S+  V   LI+LY++   +E+A+++F  I    +V++ A+
Sbjct: 173 DIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAM 232

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           I+  +++    EA+ LF ++    + PT   + S LS+   +   +LG+ +H  + K+G 
Sbjct: 233 ISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGF 292

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
                V   L+ ++++  +L  A  +F  M+ +D  +++++I      G   +++ +F +
Sbjct: 293 HSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTK 352

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M +  + PD IT   LL AC+  G + +G    +S   K G+   I   G ++DL  +  
Sbjct: 353 MQRDCLKPDCITVASLLSACASVGALHKGMQ-LHSHAIKAGMSADIILEGSLLDLYSKCA 411

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
            ++ A++F      ++  +LW  +L +    +NL  + ++  ++
Sbjct: 412 DVETAHKFFLXTETENI-VLWNVMLVAYGQLDNLSDSFEIFRQM 454



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 91/211 (43%), Gaps = 10/211 (4%)

Query: 210 LSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDM 269
           + L   ++ER ++      L  L  C   GSL     +H  I K G D    +  +L+D 
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 270 HAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITF 329
           + + G    AV VFD  S +   +W+ MI  +       +   +F  M+   ++P+  TF
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 330 LGLLYACSHTGLVDEGWNYFYSMRDK---YGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
            G+L AC      D  +NY   +  +   YG          ++DL  + G ++ A +  +
Sbjct: 163 AGVLKACVGG---DIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFN 219

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
            + +K   + W  ++S  S +   GL ++ I
Sbjct: 220 CICMKDI-VTWVAMISGLSQN---GLEEEAI 246


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 174/417 (41%), Positives = 271/417 (64%), Gaps = 6/417 (1%)

Query: 146 LHCFAIKLGLNSNLYVCTTLINLYAE--CSDVEAARRIFENISEPCVVSYNAIITAYARS 203
           LH    K+G   N  V  T+++ YA+    D+E AR++F+ + E  VVS+N++I  YA++
Sbjct: 220 LHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQN 278

Query: 204 SRPNEALSLFRELQE--RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
               EA+ L+ ++      +K   V + + L +CA  G++  GK IH  + + GL++ V 
Sbjct: 279 GMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVY 338

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V T+++DM++KCGR++ A   F  +  K+  +WSAMI  Y  HG+G +++ +F EM ++ 
Sbjct: 339 VGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSG 398

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           + P+ ITF+ +L ACSH GL+DEG  ++ +M+ ++GI  G++HYGCMVDLLGRAG LDEA
Sbjct: 399 LRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEA 458

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
           Y  I E+ +K    +W  LLS+C  H N+ LA+  ++R+FELD S+ G YV+LSN+ A A
Sbjct: 459 YSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEA 518

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
             W+DV+ +R L+K R + K PG SS E+   +  F+ GD  H    ++   L++L++ +
Sbjct: 519 RMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERM 578

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +  GYVP+T  V H D+++EEKE ALR HSEKLA+ F L+N+ P + I ++KNLRVC
Sbjct: 579 QEAGYVPNTGSVLH-DLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVC 634


>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Cucumis sativus]
          Length = 532

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 191/520 (36%), Positives = 293/520 (56%), Gaps = 39/520 (7%)

Query: 17  LCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           + +++   L LL +C +   LKQ HA  +K+ L N   VL++L+NFC ++    S+ HA 
Sbjct: 1   MSSSSKRCLLLLHKCINMNQLKQAHAQVLKSGLHNSNFVLSRLLNFCAES-RNGSLSHAF 59

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            LF  I  P I +FNTM +        + AI +F  +  +G+ PD Y+ P +LKA A + 
Sbjct: 60  KLFQHIQHPTICIFNTMIKALLLRGEFLNAIAVFSAIFRNGIHPDTYTLPYVLKASARM- 118

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY--- 193
              +  G+ +H   IKLG   N +V  +L+ +Y    ++ +AR++F+ + E   VS+   
Sbjct: 119 -TNIHLGESIHACTIKLGSAVNEFVGNSLLVMYRSFDNMRSARQVFDEMPELSAVSWTVM 177

Query: 194 ----------------------------NAIITAYARSSRPNEALSLFRELQERNLKPTD 225
                                        A+I+ Y +++   E L +FR +Q   ++P +
Sbjct: 178 IYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDE 237

Query: 226 VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285
             +++ LS+CA +G+LD G WIH Y+ + GL   ++V+T LIDM+AKCG LD A  +F+ 
Sbjct: 238 AIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNE 297

Query: 286 MSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
           MS +D   W+AMI   A  G G  +I +F EM KA + PD ITF+ +L ACS++G+VDEG
Sbjct: 298 MSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDNITFIAVLAACSNSGMVDEG 357

Query: 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP----ILWRTLL 401
              +  M   + I P  +HYGC++DLL R GR +EA   I  LP  ++P    + WR  L
Sbjct: 358 IRIWNRMSTVHKIEPKSEHYGCVIDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFL 417

Query: 402 SSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLK 461
           S+C  H     A+   ER+F+L + H G YV+LSN+ A  G+ ED   +R +MK +GV K
Sbjct: 418 SACCKHGQTQQAEVAAERLFQL-ERHSGAYVLLSNMYAALGKHEDAKRVRNMMKLKGVEK 476

Query: 462 VPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           VPGCSSI+VN VV EF +G+  H +  ++   L+EL K++
Sbjct: 477 VPGCSSIKVNGVVNEFIAGEKTHRHIDNIHLVLEELNKQI 516


>gi|125583346|gb|EAZ24277.1| hypothetical protein OsJ_08028 [Oryza sativa Japonica Group]
          Length = 613

 Score =  351 bits (900), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 186/494 (37%), Positives = 295/494 (59%), Gaps = 10/494 (2%)

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRA-----IFLFVELLNSGLLPDDYSF 125
           SM +A  +F  + +P+   +NT+ RGY  +           + LFV++++ G+ PD Y+F
Sbjct: 82  SMAYAASIFAALDDPEAFDYNTLMRGYVAAAGGGGRDPAAALRLFVDMVDDGVEPDSYTF 141

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
           P + KACA +GA  L+EG+QL    +KLG   + +   +LI+ Y +C + + ARR FE +
Sbjct: 142 PFVFKACAQLGA--LQEGRQLQGHLVKLGFQRDEHSQNSLISFYGKCGEADLARRAFEQM 199

Query: 186 S--EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
              E    S++A++ AY R+ R  E +  F  +     +P + +M+SALS+CA LG+ D+
Sbjct: 200 EDDEQTTASWSALLAAYTRAGRWAECVESFGAMVRAGWRPDESSMVSALSACAHLGAHDV 259

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303
           G+ IH  + +        ++T+L+DM+AKCG +++A +VFD M  K+   +SAM+   A 
Sbjct: 260 GRSIHCALLRNTARLNTFMSTSLVDMYAKCGCIENAAAVFDAMDDKNAWTYSAMVSGLAL 319

Query: 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK 363
           HG G K++ +F+ M++    PD   ++G+L ACS  GL++EG   F  MR ++ + P  +
Sbjct: 320 HGDGRKALEVFDAMVREGHRPDAAVYVGVLNACSRAGLLEEGLRCFDRMRLEHKLTPNAQ 379

Query: 364 HYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
           HYGCMVDL+ RAGRLD+A   I  +P   T   WR+LL++C  H NL LA++ ++ +  L
Sbjct: 380 HYGCMVDLMARAGRLDDARALIGSMPTGPTDTAWRSLLNACRIHGNLELAERALQELERL 439

Query: 424 DDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGV 483
             ++ GDY+ILS++ ARA   +     R    DRG+ + PG S++EV+     F S D  
Sbjct: 440 GATNAGDYIILSDMHARAHNRDAAAARRTEAVDRGLAQAPGYSAVEVHGATHRFVSQDRS 499

Query: 484 HSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNT 543
           H  + D+ + L ++  +L+  GY PDTS +   D  +EEK   +  HS+KLA+ FGLL+T
Sbjct: 500 HPRADDIYEMLHQMEWQLRFEGYTPDTSELAL-DAGEEEKRRVVAAHSQKLAMAFGLLST 558

Query: 544 PPGTTIRVVKNLRV 557
           P G  +RVV NLR+
Sbjct: 559 PEGAPVRVVTNLRM 572


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 201/545 (36%), Positives = 306/545 (56%), Gaps = 18/545 (3%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKT-HLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           S LP C+    L   +++HA  IK   L  +  V + L++      T   +  A  +FD 
Sbjct: 276 SALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDM---YATHEQVGKARQVFDM 332

Query: 82  IPEP--DIVLFNTMARGYSRSKTPIRAIFLFVEL-LNSGLLPDDYSFPSLLKACACVGAE 138
           +P+    + ++N M  GY+++     A+ LF  +   +G +P + +  S+L ACA   +E
Sbjct: 333 VPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACA--RSE 390

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
           A    + +H + +K G+  N +V   L+++YA     + ARRIF  +  P VVS+N +IT
Sbjct: 391 AFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLIT 450

Query: 199 AYARSSRPNEALSLFRELQ---ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
                    +A  L RE+Q   E  + P  +T+++ L  CA+L +   GK IH Y  ++ 
Sbjct: 451 GCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHA 510

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
           LD  V V +AL+DM+AKCG L  + +VFD +  ++T  W+ +I+AY  HG G ++ ++F+
Sbjct: 511 LDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFD 570

Query: 316 EMMKA-QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
            M  + +  P+E+TF+  L ACSH+G+VD G   F++M   +G+ P      C+VD+LGR
Sbjct: 571 RMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGR 630

Query: 375 AGRLDEAYRFIDELPIKSTPI-LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI 433
           AGRLDEAY  +  +      +  W T+L +C  H N+ L +   ER+ EL+      YV+
Sbjct: 631 AGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVL 690

Query: 434 LSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKA 493
           L N+ + AG+W     +R  M+ RGV K PGCS IEV+  +  F +G+  H  S ++   
Sbjct: 691 LCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAH 750

Query: 494 LDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVK 553
           ++ L  E+   GY PDTS V H DM+D +K   LR HSEKLAI FGLL   PG TIRV K
Sbjct: 751 MEALWGEMVARGYTPDTSCVLH-DMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAK 809

Query: 554 NLRVC 558
           NLRVC
Sbjct: 810 NLRVC 814



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 153/314 (48%), Gaps = 12/314 (3%)

Query: 123 YSFPSLLKACACV--GAEALEEGKQLHCFAIKLGL--NSNLYVCTTLINLYAECSDVEAA 178
           ++  S+L+A + +   A A+  G++ H FA+K GL      +    L+++YA    V  A
Sbjct: 163 FTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADA 222

Query: 179 RRIFENIS--EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236
           +R+F   +     VV++N +++   +S   +EA+    ++    ++P  VT  SAL +C+
Sbjct: 223 QRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACS 282

Query: 237 LLGSLDLGKWIHEY-IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM--SGKDTQA 293
            L  LD+G+ +H Y IK   L     V +AL+DM+A   ++  A  VFD +  SGK    
Sbjct: 283 RLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGM 342

Query: 294 WSAMIVAYATHGQGHKSILMFEEM-MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
           W+AMI  YA  G   +++ +F  M  +A   P E T   +L AC+ +     G    +  
Sbjct: 343 WNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAF-AGKEAVHGY 401

Query: 353 RDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGL 412
             K G+         ++D+  R G+ D A R    + +    + W TL++ C    ++  
Sbjct: 402 VVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDV-VSWNTLITGCVVQGHVAD 460

Query: 413 AKQVIERIFELDDS 426
           A Q+   + +L++ 
Sbjct: 461 AFQLAREMQQLEEG 474


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 214/575 (37%), Positives = 320/575 (55%), Gaps = 63/575 (10%)

Query: 22  PNALSL---LPRCTSFRGL---KQIHAVTIKTHLQNDL-------NVLTKLINFCTQNPT 68
           PN ++L   LP C+    L   K+IHA  +   + NDL         L  +   C Q   
Sbjct: 285 PNGVTLASVLPACSHLEMLGCGKEIHAFVL---MNNDLIENSFVGCALVDMYCNCKQP-- 339

Query: 69  TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL-NSGLLPDDYSFPS 127
               E   L+FD +    I ++N M  GY R++    AI LFVE++   GL P+  +  S
Sbjct: 340 ----EKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSS 395

Query: 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE 187
           +L AC  V  E+  + + +H   +K G   + YV   L+++Y+    +E AR IF +++ 
Sbjct: 396 VLPAC--VRCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNR 453

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQ--------------ERN----LKPTDVTML 229
             +VS+N +IT Y    R ++AL+L  ++Q              E N    LKP  VT++
Sbjct: 454 KDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLM 513

Query: 230 SALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK 289
           + L  CA L +L  GK IH Y  K  L K V V +AL+DM+AKCG L+ + +VF+ MS +
Sbjct: 514 TVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVR 573

Query: 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKA-----QVSPDEITFLGLLYACSHTGLVDE 344
           +   W+ +I+AY  HG+G +++ +F  M++      ++ P+E+T++ +  + SH+G+VDE
Sbjct: 574 NVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDE 633

Query: 345 GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI-LWRTLLSS 403
           G N FY+M+ K+GI P   HY C+VDLLGR+G+++EAY  I  +P     +  W +LL +
Sbjct: 634 GLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLLGA 693

Query: 404 CSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVP 463
           C  H NL + +   + +F L D +  DY    ++  R             MK++GV K P
Sbjct: 694 CKIHQNLEIGEIAAKNLFVL-DPNVLDYGTKQSMLGRK------------MKEKGVRKEP 740

Query: 464 GCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEK 523
           GCS IE  + V +F +GD  H  S ++ + L+ L   +K  GYVPDTS V H ++ +EEK
Sbjct: 741 GCSWIEHGDEVHKFLAGDVSHPQSKEVHEYLETLSLRMKKEGYVPDTSCVLH-NVGEEEK 799

Query: 524 EIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           E  L  HSE+LAI FGLLNT PGTTIRV KNLRVC
Sbjct: 800 ETMLCGHSERLAIAFGLLNTSPGTTIRVAKNLRVC 834



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/247 (34%), Positives = 144/247 (58%), Gaps = 4/247 (1%)

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
           S T  +AI  +  ++ +G+ PD+++FP++LKA A  G + L  GKQLH    K G     
Sbjct: 63  SSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATA--GIQDLNLGKQLHAHVFKFGQALPT 120

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
            V  +L+N+Y +C D++AARR+F+ I+    VS+N++I A  R      A+ LFR +   
Sbjct: 121 AVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLE 180

Query: 220 NLKPTDVTMLSALSSCA-LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
           N+ PT  T++S   +C+ L+  L LGK +H ++ + G D     N AL+ M+AK GR+ +
Sbjct: 181 NVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNG-DWRTFTNNALVTMYAKLGRVYE 239

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A ++FD    KD  +W+ +I + + + +  +++L    M+++ V P+ +T   +L ACSH
Sbjct: 240 AKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSH 299

Query: 339 TGLVDEG 345
             ++  G
Sbjct: 300 LEMLGCG 306



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 179/379 (47%), Gaps = 16/379 (4%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           KQ+HA   K        V   L+N   +      ++ A  +FD I   D V +N+M    
Sbjct: 105 KQLHAHVFKFGQALPTAVPNSLVNMYGK---CGDIDAARRVFDEITNRDDVSWNSMINAA 161

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            R +    A+ LF  +L   + P  ++  S+  AC+ +    L  GKQ+H F ++ G + 
Sbjct: 162 CRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHACSNL-INGLLLGKQVHAFVLRNG-DW 219

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
             +    L+ +YA+   V  A+ +F+   +  +VS+N II++ +++ R  EAL     + 
Sbjct: 220 RTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVML 279

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI-KKYGLDKYVKVNTALIDMHAKCGRL 276
           +  ++P  VT+ S L +C+ L  L  GK IH ++     L +   V  AL+DM+  C + 
Sbjct: 280 QSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQP 339

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM-KAQVSPDEITFLGLLYA 335
           +    VFD M  +    W+AMI  Y  +   +++I +F EM+ +  +SP+ +T   +L A
Sbjct: 340 EKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPA 399

Query: 336 C--SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
           C    + L  EG    +S   K+G          ++D+  R GR++ A      +  K  
Sbjct: 400 CVRCESFLDKEG---IHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDI 456

Query: 394 PILWRTLLSS---CSSHNN 409
            + W T+++    C  H++
Sbjct: 457 -VSWNTMITGYVVCGRHDD 474



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 104/210 (49%), Gaps = 6/210 (2%)

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
           SS  ++A+S +  +    + P +    + L + A +  L+LGK +H ++ K+G      V
Sbjct: 63  SSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAV 122

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
             +L++M+ KCG +D A  VFD ++ +D  +W++MI A     +   ++ +F  M+   V
Sbjct: 123 PNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENV 182

Query: 323 SPDEITFLGLLYACSH--TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
            P   T + + +ACS+   GL+     + + +R+  G      +   +V +  + GR+ E
Sbjct: 183 GPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRN--GDWRTFTN-NALVTMYAKLGRVYE 239

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
           A    D    K   + W T++SS S ++  
Sbjct: 240 AKTLFDVFDDKDL-VSWNTIISSLSQNDRF 268


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 196/529 (37%), Positives = 317/529 (59%), Gaps = 12/529 (2%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP-DIVLFNTMAR 95
           ++Q+HA+++ T L + ++V   LI   ++N     ++ A  +F  + E  D V +N+M  
Sbjct: 157 IRQLHALSVVTGLDSYVSVGNALITSYSKN---GFLKEARRIFHWLSEDRDEVSWNSMVV 213

Query: 96  GYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155
            Y + +   +A+ L++E+   GL+ D ++  S+L A   V  + L  G Q H   IK G 
Sbjct: 214 AYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNV--QDLLGGLQFHAKLIKSGY 271

Query: 156 NSNLYVCTTLINLYAECSD-VEAARRIFENISEPCVVSYNAIITAYA-RSSRPNEALSLF 213
           + N +V + LI+LY++C   +   R++F+ IS P +V +N +I+ Y+      +EAL  F
Sbjct: 272 HQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECF 331

Query: 214 RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL-DKYVKVNTALIDMHAK 272
           R+LQ    +P D +++  +S+C+ + S   G+ +H    K  +    + VN ALI M++K
Sbjct: 332 RQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSK 391

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
           CG L DA ++FD M   +T ++++MI  YA HG G +S+ +F+ M++   +P  ITF+ +
Sbjct: 392 CGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISV 451

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L AC+HTG V++G  YF  M+ K+GI P   H+ CM+DLLGRAG+L EA R I+ +P   
Sbjct: 452 LAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDP 511

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452
               W  LL +C  H N+ LA +   R+ +LD  +   YV+L+N+ +  GR +D   +RK
Sbjct: 512 GFFFWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRK 571

Query: 453 LMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPD--T 510
           LM+DRGV K PGCS IEVN  +  F + D  H     +Q+ L+E+++++K VGY P+  +
Sbjct: 572 LMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRS 631

Query: 511 SLVHHGD-MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +LV   D +   E+E+ L +HSEKLA++FGL++T  G  I V KNLR+C
Sbjct: 632 ALVGGDDRVWQREEELRLGHHSEKLAVSFGLMSTREGEPILVFKNLRIC 680



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 193/400 (48%), Gaps = 25/400 (6%)

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
           S +E AH LFD +P+PD V +NT+   Y+R      A  LF+E+  + L  D ++   ++
Sbjct: 88  SYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGII 147

Query: 130 KACAC-VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP 188
            AC   VG       +QLH  ++  GL+S + V   LI  Y++   ++ ARRIF  +SE 
Sbjct: 148 TACGINVGLI-----RQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSED 202

Query: 189 C-VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
              VS+N+++ AY +    ++AL L+ E+  R L     T+ S L++   +  L  G   
Sbjct: 203 RDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQF 262

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGR-LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ 306
           H  + K G  +   V + LID+++KCG  + D   VFD +S  D   W+ MI  Y+ +  
Sbjct: 263 HAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYED 322

Query: 307 -GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGI-----VP 360
              +++  F ++      PD+ + + ++ ACS+     +G       R  +G+     +P
Sbjct: 323 LSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQG-------RQVHGLALKLDIP 375

Query: 361 G--IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
              I     ++ +  + G L +A    D +P  +T + + ++++  + H     +  + +
Sbjct: 376 SNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNT-VSYNSMIAGYAQHGMGFQSLHLFQ 434

Query: 419 RIFELDDSHGG-DYVILSNLCARAGRWEDVDYLRKLMKDR 457
           R+ E+  +     ++ +   CA  GR ED      +MK +
Sbjct: 435 RMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQK 474



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 149/323 (46%), Gaps = 43/323 (13%)

Query: 123 YSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF 182
           ++F   LK C  +    L  GK LH   IK  + ++ Y+    + LY++C  + AARR+F
Sbjct: 9   HNFRQFLKTC--IAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVF 66

Query: 183 EN-------------------------------ISEPCVVSYNAIITAYARSSRPNEALS 211
           ++                               + +P  VSYN +I AYAR      A  
Sbjct: 67  DHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQ 126

Query: 212 LFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271
           LF E++E  L     T+   +++C +  ++ L + +H      GLD YV V  ALI  ++
Sbjct: 127 LFLEMREAFLDMDGFTLSGIITACGI--NVGLIRQLHALSVVTGLDSYVSVGNALITSYS 184

Query: 272 KCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           K G L +A  +F  +S  +D  +W++M+VAY  H +G K++ ++ EM    +  D  T  
Sbjct: 185 KNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLA 244

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR-LDEAYRFIDELP 389
            +L A ++   +  G   F++   K G          ++DL  + G  + +  +  DE+ 
Sbjct: 245 SVLTAFTNVQDLLGGLQ-FHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEI- 302

Query: 390 IKSTP--ILWRTLLSSCSSHNNL 410
             S P  +LW T++S  S + +L
Sbjct: 303 --SNPDLVLWNTMISGYSLYEDL 323



 Score = 45.1 bits (105), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 93/212 (43%), Gaps = 6/212 (2%)

Query: 232 LSSCALLGSLDLGKWIHE-YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290
           L +C     L  GK +H  YIK + +     ++   + +++KC RL  A  VFD+    +
Sbjct: 15  LKTCIAHRDLRTGKSLHALYIKSF-VPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCN 73

Query: 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350
             +++ +I AYA       +  +F+EM +    PD +++  L+ A +  G     +  F 
Sbjct: 74  VFSFNTLISAYAKESYVEVAHQLFDEMPQ----PDSVSYNTLIAAYARRGDTQPAFQLFL 129

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
            MR+ +  + G    G +       G + + +       + S   +   L++S S +  L
Sbjct: 130 EMREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFL 189

Query: 411 GLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
             A+++   + E  D    + ++++ +  R G
Sbjct: 190 KEARRIFHWLSEDRDEVSWNSMVVAYMQHREG 221


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 189/522 (36%), Positives = 308/522 (59%), Gaps = 8/522 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K++HA  I+  L +++ +   L++   +      M HA   F+ + E D++ + T+  GY
Sbjct: 369 KEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHA---FECMHEKDLISWTTIIAGY 425

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           ++++  + AI LF ++   G+  D     S+L+AC+  G ++    +++H +  K  L +
Sbjct: 426 AQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACS--GLKSRNFIREIHGYVFKRDL-A 482

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           ++ +   ++N+Y E   ++ ARR FE+I    +VS+ ++IT    +  P EAL LF  L+
Sbjct: 483 DIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLK 542

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           + N++P  + ++SALS+ A L SL  GK IH ++ + G      + ++L+DM+A CG ++
Sbjct: 543 QTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVE 602

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           ++  +F ++  +D   W++MI A   HG G+K+I +F++M    V PD ITFL LLYACS
Sbjct: 603 NSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACS 662

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H+GL+ EG  +F  M+  Y + P  +HY CMVDLL R+  L+EAY F+  +PIK +  +W
Sbjct: 663 HSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIW 722

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             LL +C  H+N  L +   + + + D  + G Y ++SN+ A  GRW DV+ +R  MK  
Sbjct: 723 CALLGACHIHSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGN 782

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL-KMVGYVPDTSLVHHG 516
           G+ K PGCS IEV+N +  F + D  H  + D+   L +  K L K  GY+  T  V H 
Sbjct: 783 GLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLEKKGGYIAQTKFVFH- 841

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           ++ +EEK   L  HSE+LA+ +GLL TP GT IR+ KNLR+C
Sbjct: 842 NVSEEEKTQMLYGHSERLALGYGLLVTPKGTCIRITKNLRIC 883



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 128/464 (27%), Positives = 220/464 (47%), Gaps = 48/464 (10%)

Query: 27  LLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           LL  C + + L   +Q+HA+ +K+HL   L   TKL+          S+  A  +FD + 
Sbjct: 52  LLDLCVAAKALPQGQQLHALLLKSHLSAFLA--TKLV---LMYGKCGSLRDAVKVFDEMS 106

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
           E  I  +N +   +  S   + AI L+ ++   G+  D  +FPS+LKAC  +G   L  G
Sbjct: 107 ERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRL--G 164

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI--SEPCVVSYNAIITAYA 201
            ++H  A+K G    ++VC  LI +Y +C D+  AR +F+ I   +   VS+N+II+A+ 
Sbjct: 165 AEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHV 224

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
                 EALSLFR +QE  +     T ++AL        + LG  IH  + K      V 
Sbjct: 225 AEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVY 284

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V  ALI M+AKCGR++DA  VF++M  +D  +W+ ++     +     ++  F +M  + 
Sbjct: 285 VANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSG 344

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWN-YFYSMR--------------DKYGIVPGIKHYG 366
             PD+++ L L+ A   +G + +G   + Y++R              D Y     +K+ G
Sbjct: 345 QKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMG 404

Query: 367 ----CM--VDLLGR----AGRLD-----EAYRFIDELPIKST---PILWRTLLSSCSSHN 408
               CM   DL+      AG        EA     ++ +K     P++  ++L +CS   
Sbjct: 405 HAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLK 464

Query: 409 NLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452
           +    +++   +F+ D +   D ++ + +    G    +DY R+
Sbjct: 465 SRNFIREIHGYVFKRDLA---DIMLQNAIVNVYGEVGHIDYARR 505



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 190/396 (47%), Gaps = 23/396 (5%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI--PEPDIVLFNTMARG 96
           +IH V +K      + V   LI           +  A +LFD I   + D V +N++   
Sbjct: 166 EIHGVAVKCGYGEFVFVCNALI---AMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISA 222

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           +      + A+ LF  +   G+  + Y+F + L+         ++ G  +H   +K    
Sbjct: 223 HVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVE--DPSFVKLGMGIHGAVLKSNHF 280

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
           +++YV   LI +YA+C  +E A R+FE++     VS+N +++   ++   ++AL+ FR++
Sbjct: 281 ADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDM 340

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           Q    KP  V++L+ +++    G+L  GK +H Y  + GLD  +++   L+DM+AKC  +
Sbjct: 341 QNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCV 400

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
                 F+ M  KD  +W+ +I  YA +    ++I +F ++    +  D +    +L AC
Sbjct: 401 KYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRAC 460

Query: 337 SHTGLVDEGWNYFYSMRDKYGIV-----PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIK 391
           S  GL    +     +R+ +G V       I     +V++ G  G +D A R  +   I+
Sbjct: 461 S--GLKSRNF-----IREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRAFE--SIR 511

Query: 392 STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
           S  I+  T + +C  HN  GL  + +E  + L  ++
Sbjct: 512 SKDIVSWTSMITCCVHN--GLPVEALELFYSLKQTN 545


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 192/511 (37%), Positives = 302/511 (59%), Gaps = 44/511 (8%)

Query: 89  LFNTMARGYSRSKTPIR---AIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
           ++N + R    + +P +    I ++  + +  + PD ++FP LL +        L  G++
Sbjct: 25  VWNIIIRAIVHNVSPPQRHSPISVYFRMRHHCVSPDFHTFPFLLPSFH--NPIHLPLGQR 82

Query: 146 LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSR 205
            H   +  GL+ + +V T+L+N+Y+ C D+ +A RIF+      + ++N+++ AYA++  
Sbjct: 83  THAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAGL 142

Query: 206 PNEALSLFRELQERNL-----------------------------KPTDV-------TML 229
            N A  LF E+ ERN+                             KP +V       TM 
Sbjct: 143 INHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMS 202

Query: 230 SALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM-SG 288
           + LS+C  LG+L+ GKW+H YI KYG++  + + TALIDM+AKCG L+ A  VFD + S 
Sbjct: 203 TVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSK 262

Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDEITFLGLLYACSHTGLVDEGWN 347
           KD +A+SAMI   A +G   +   +F EM  +  ++P+ +TF+G+L AC H GL+++G +
Sbjct: 263 KDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKS 322

Query: 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
           YF  M +++GI P I+HYGCMVDL GR+G + EA  FI  +P++   ++W +LLS     
Sbjct: 323 YFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRML 382

Query: 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSS 467
            ++   +  ++R+ ELD  + G YV+LSN+ A+ GRW +V  +R  M+ +G+ KVPGCS 
Sbjct: 383 GDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWIEVKRIRHEMEVKGIKKVPGCSY 442

Query: 468 IEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIAL 527
           +EV  VV EF  GD     S  +   L+E+++ L+  GYV DT  V   D+E+++KE+AL
Sbjct: 443 VEVEGVVHEFVVGDESQQESERIYAMLEEIMQRLREAGYVSDTKEVLL-DLEEKDKEMAL 501

Query: 528 RYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            YHSEKLAI F L+ T PGT +R++KNLR+C
Sbjct: 502 SYHSEKLAIAFCLMKTRPGTPVRIIKNLRIC 532



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 125/236 (52%), Gaps = 11/236 (4%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL-----NSGLLPDDYSFP 126
           + HA  LFD +PE +++ ++ +  GY        A+ LF E+         + P+ ++  
Sbjct: 143 INHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMS 202

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI- 185
           ++L AC  +G  ALE+GK +H +  K G+  ++ + T LI++YA+C  +E A+R+F+ + 
Sbjct: 203 TVLSACGRLG--ALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALG 260

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFREL-QERNLKPTDVTMLSALSSCALLGSLDLG 244
           S+  V +Y+A+I   A     +E   +F E+    N+ P  VT +  L +C   G ++ G
Sbjct: 261 SKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKG 320

Query: 245 K-WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMI 298
           K +     +++G+   ++    ++D++ + G + +A S   +M  + D   W +++
Sbjct: 321 KSYFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLL 376


>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  350 bits (899), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 187/490 (38%), Positives = 292/490 (59%), Gaps = 21/490 (4%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLI---NFCTQNPTTSSMEHAHLLFDR 81
           +S L RC+S   +KQIHA  +K +L  +  V  KLI   + C Q      M  A  +F++
Sbjct: 21  ISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQ------MTLAVNVFNQ 74

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           I +PD++L+NT+ R + R+  P+ A  +F E+ +SG+  D++++P LLKAC+  G   + 
Sbjct: 75  IQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACS--GKVWVR 132

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
             + +H    K+G   +++V  +LI+ Y +  ++  ARR+F+ + E   VS+N I+  Y 
Sbjct: 133 VVEMIHAQVEKMGFCLDIFVPNSLIDSYFKLGELGEARRLFDEMPERDTVSWNTILDGYV 192

Query: 202 RSSRPNEALSLFRELQERN----------LKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           ++   N A  LF ++  RN          LK  D T++S LS+CA+ G L LGK +H  I
Sbjct: 193 KAGEMNAAFELFEKMPARNVVSWSTMEAGLKFDDGTVISILSACAVSGLLGLGKRVHASI 252

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
           ++        V+ ALIDM+AKCG L++A+S+F  M  KD  +W+A+I   A HG G K++
Sbjct: 253 ERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKAL 312

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +F  M      PD++TF+G+L AC+H G VDEG +YF++M   YG+ P ++HYGCMVDL
Sbjct: 313 QLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDL 372

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
           LGR GRL EA+R +  +P++   I+W TLL +C  H+  GLA++V +R+ + + S  G+ 
Sbjct: 373 LGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNL 432

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
            +LSN+ A AG W++   +R  MK   + K  G SSIEV++ V EF   D  H  S  + 
Sbjct: 433 SMLSNIYAAAGDWDNFANIRLRMKSTSIQKPSGGSSIEVDDEVHEFTVFDRSHPKSDRIY 492

Query: 492 KALDELVKEL 501
           K +D L + +
Sbjct: 493 KTIDGLGQHI 502


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  350 bits (899), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 201/545 (36%), Positives = 306/545 (56%), Gaps = 18/545 (3%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKT-HLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           S LP C+    L   +++HA  IK   L  +  V + L++      T   +  A  +FD 
Sbjct: 278 SALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDM---YATHEQVGKARQVFDM 334

Query: 82  IPEP--DIVLFNTMARGYSRSKTPIRAIFLFVEL-LNSGLLPDDYSFPSLLKACACVGAE 138
           +P+    + ++N M  GY+++     A+ LF  +   +G +P + +  S+L ACA   +E
Sbjct: 335 VPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACA--RSE 392

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
           A    + +H + +K G+  N +V   L+++YA     + ARRIF  +  P VVS+N +IT
Sbjct: 393 AFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLIT 452

Query: 199 AYARSSRPNEALSLFRELQ---ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
                    +A  L RE+Q   E  + P  +T+++ L  CA+L +   GK IH Y  ++ 
Sbjct: 453 GCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHA 512

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
           LD  V V +AL+DM+AKCG L  + +VFD +  ++T  W+ +I+AY  HG G ++ ++F+
Sbjct: 513 LDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFD 572

Query: 316 EMMKA-QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
            M  + +  P+E+TF+  L ACSH+G+VD G   F++M   +G+ P      C+VD+LGR
Sbjct: 573 RMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGR 632

Query: 375 AGRLDEAYRFIDELPIKSTPI-LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI 433
           AGRLDEAY  +  +      +  W T+L +C  H N+ L +   ER+ EL+      YV+
Sbjct: 633 AGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVL 692

Query: 434 LSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKA 493
           L N+ + AG+W     +R  M+ RGV K PGCS IEV+  +  F +G+  H  S ++   
Sbjct: 693 LCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAH 752

Query: 494 LDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVK 553
           ++ L  E+   GY PDTS V H DM+D +K   LR HSEKLAI FGLL   PG TIRV K
Sbjct: 753 MEALWGEMVARGYTPDTSCVLH-DMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAK 811

Query: 554 NLRVC 558
           NLRVC
Sbjct: 812 NLRVC 816



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 153/314 (48%), Gaps = 12/314 (3%)

Query: 123 YSFPSLLKACACV--GAEALEEGKQLHCFAIKLGL--NSNLYVCTTLINLYAECSDVEAA 178
           ++  S+L+A + +   A A+  G++ H FA+K GL      +    L+++YA    V  A
Sbjct: 165 FTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADA 224

Query: 179 RRIFENIS--EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236
           +R+F   +     VV++N +++   +S   +EA+    ++    ++P  VT  SAL +C+
Sbjct: 225 QRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACS 284

Query: 237 LLGSLDLGKWIHEY-IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM--SGKDTQA 293
            L  LD+G+ +H Y IK   L     V +AL+DM+A   ++  A  VFD +  SGK    
Sbjct: 285 RLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGM 344

Query: 294 WSAMIVAYATHGQGHKSILMFEEM-MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
           W+AMI  YA  G   +++ +F  M  +A   P E T   +L AC+ +     G    +  
Sbjct: 345 WNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAF-AGKEAVHGY 403

Query: 353 RDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGL 412
             K G+         ++D+  R G+ D A R    + +    + W TL++ C    ++  
Sbjct: 404 VVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDV-VSWNTLITGCVVQGHVAD 462

Query: 413 AKQVIERIFELDDS 426
           A Q+   + +L++ 
Sbjct: 463 AFQLAREMQQLEEG 476


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  350 bits (899), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 190/485 (39%), Positives = 283/485 (58%), Gaps = 4/485 (0%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +FD +P+  +  +N M  G  + +     + LF E+   G  PD+Y+  S+    A 
Sbjct: 44  ARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSA- 102

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
            G  ++  G+Q+H +AIK GL  +L V ++L ++Y     ++    +  ++    +V++N
Sbjct: 103 -GLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWN 161

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
            +I   A++  P   L L++ ++    +P  +T ++ LSSC+ L     G+ IH    K 
Sbjct: 162 TLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKI 221

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
           G    V V ++LI M++KCG L DA   F     +D   WS+MI AY  HGQG ++I +F
Sbjct: 222 GASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIKLF 281

Query: 315 EEMM-KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
             M  + ++  +E+ FL LLYACSH+GL D+G   F  M +KYG  PG+KHY C+VDLLG
Sbjct: 282 NSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLG 341

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI 433
           RAG LD+A   I  +PIK  P++W+TLLS+C+ H N  +A++V + I E+D +    YV+
Sbjct: 342 RAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQKVFKEILEIDPNDSACYVL 401

Query: 434 LSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKA 493
           L+N+ A A RW DV  +RK M+D+ V K  G S  E    V +F  GD   S S ++   
Sbjct: 402 LANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSY 461

Query: 494 LDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVK 553
           L EL  E+K+ GY PDT+ V H DM++EEKE  L  HSEKLA+ F L+  P G  IR++K
Sbjct: 462 LKELTLEMKLKGYKPDTASVLH-DMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIK 520

Query: 554 NLRVC 558
           NLRVC
Sbjct: 521 NLRVC 525



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 125/252 (49%), Gaps = 2/252 (0%)

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           N      LIN Y    D+ +AR++F+ + +  + ++NA+I    +     E LSLFRE+ 
Sbjct: 24  NFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREMH 83

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
                P + T+ S  S  A L S+ +G+ IH Y  KYGL+  + VN++L  M+ + G+L 
Sbjct: 84  GLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQ 143

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           D   V  +M  ++  AW+ +I+  A +G     + +++ M  +   P++ITF+ +L +CS
Sbjct: 144 DGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCS 203

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
              +  +G    ++   K G    +     ++ +  + G L +A +   E       ++W
Sbjct: 204 DLAIRGQG-QQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSERE-DEDEVMW 261

Query: 398 RTLLSSCSSHNN 409
            +++S+   H  
Sbjct: 262 SSMISAYGFHGQ 273


>gi|326528959|dbj|BAJ97501.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 514

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 183/476 (38%), Positives = 279/476 (58%), Gaps = 7/476 (1%)

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
           P  V +N      SR+    RA+ L  E+   G   D+Y+ P  L + A +   A     
Sbjct: 4   PPGVAYNAAISRCSRAGLHQRALALLHEMRARGHRADEYTLPPALNSAALLRLPA----D 59

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
            LH   ++ GL ++L+V   L++ YA+ S   AAR +F+ +    VVS+ +++T  ARS 
Sbjct: 60  ALHSLLLRAGLAAHLHVANALVDAYAKLSRHGAARAVFDEMPRRDVVSWTSLLTGLARSR 119

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
             + AL ++R++    + P +  + +ALSSCA   +L+LG+ +H    +  LD ++ V  
Sbjct: 120 SHDSALQVYRDMVAAGVGPDEFAVAAALSSCAGATALELGRSVHAAAVRLALDPFLSVGN 179

Query: 265 ALIDMHAKCGRLDDAVSVFD--NMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
           +L+ M+AK G L +A  VFD   +   D   W+A+IV YA +G+G +S+ ++ +M+++  
Sbjct: 180 SLVSMYAKTGSLGEAKKVFDATRVDRCDPITWTALIVGYAQNGRGRESLEIYADMVRSGC 239

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            PD +TF+GLL+ACSH GLVD G  +F SM+ ++GI PG  HY CMVDLLGRAGRLDEA 
Sbjct: 240 RPDYVTFIGLLFACSHAGLVDAGRAHFRSMQAEHGIAPGADHYACMVDLLGRAGRLDEAM 299

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
             ++    +    +W+ LL++C +H N  LA+     ++ LD +    YV+LSNL +RAG
Sbjct: 300 DLLNRSTTRLDATVWKALLAACRTHRNAELAEHAAAMVWRLDPTDAVPYVMLSNLYSRAG 359

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           RW DV  +R  MK RG+ K PGCS +  N V   F+  D  H  + ++ + ++E+ + ++
Sbjct: 360 RWGDVARVRTSMKARGITKEPGCSWVAANGVTHLFYVEDRRHPRAAEVYRKVEEMTERIR 419

Query: 503 MVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             GYV DT+     D   E +E  L +HSE+LA+ FGLL  P G  IRV KNLRVC
Sbjct: 420 GQGYVADTAWALQ-DEGPEGREKGLAHHSERLAVAFGLLAVPAGAPIRVFKNLRVC 474



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 148/269 (55%), Gaps = 9/269 (3%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           +H++ ++  L   L+V   L++   +    S    A  +FD +P  D+V + ++  G +R
Sbjct: 61  LHSLLLRAGLAAHLHVANALVDAYAK---LSRHGAARAVFDEMPRRDVVSWTSLLTGLAR 117

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
           S++   A+ ++ +++ +G+ PD+++  + L +CA  GA ALE G+ +H  A++L L+  L
Sbjct: 118 SRSHDSALQVYRDMVAAGVGPDEFAVAAALSSCA--GATALELGRSVHAAAVRLALDPFL 175

Query: 160 YVCTTLINLYAECSDVEAARRIFE--NISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            V  +L+++YA+   +  A+++F+   +     +++ A+I  YA++ R  E+L ++ ++ 
Sbjct: 176 SVGNSLVSMYAKTGSLGEAKKVFDATRVDRCDPITWTALIVGYAQNGRGRESLEIYADMV 235

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK-KYGLDKYVKVNTALIDMHAKCGRL 276
               +P  VT +  L +C+  G +D G+     ++ ++G+         ++D+  + GRL
Sbjct: 236 RSGCRPDYVTFIGLLFACSHAGLVDAGRAHFRSMQAEHGIAPGADHYACMVDLLGRAGRL 295

Query: 277 DDAVSVFDNMSGK-DTQAWSAMIVAYATH 304
           D+A+ + +  + + D   W A++ A  TH
Sbjct: 296 DEAMDLLNRSTTRLDATVWKALLAACRTH 324


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 179/441 (40%), Positives = 281/441 (63%), Gaps = 9/441 (2%)

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179
           P+  ++ +++ AC C G + ++ G++L      L    NL     ++  Y +  ++E AR
Sbjct: 170 PNAIAWNAMVTAC-CRGGD-MKGGREL----FDLMPVRNLMSWNVMLAGYTKAGELELAR 223

Query: 180 RIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG 239
            +F  +     VS++ +I  +A +    EA S FRELQ + ++P + ++   LS+CA  G
Sbjct: 224 EMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAG 283

Query: 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN-MSGKDTQAWSAMI 298
           +L+ GK +H +I+K GL   V VN AL+D ++KCG +  A  VF+  M+ ++  +W++M+
Sbjct: 284 ALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMM 343

Query: 299 VAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGI 358
            A A HG G ++I +F +M ++ + PDEI F+ LLYACSH GLV++G  YF  M+  Y I
Sbjct: 344 AALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNI 403

Query: 359 VPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
            P I+HYGCMVDL GRAG+L +AY F+ ++PI  T I+WRTLL +CS H ++ LA+QV E
Sbjct: 404 EPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQVKE 463

Query: 419 RIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFF 478
           R+ ELD ++  D+V+LSN  A AG+W+D   +R+ M ++ + K PG S IEV+ ++  F 
Sbjct: 464 RLSELDPNNSSDHVLLSNAYAVAGKWKDAASVRRSMTEQRITKTPGWSMIEVDKIMYTFL 523

Query: 479 SGDGVHSYSTDLQKALDELVKELKMV-GYVPDTSLVHHGDMEDEEKEIALRYHSEKLAIT 537
           +G   +  + +  K L E+++ L++  GYVP+   V H D+E+EEKE ++  HSEKLA+ 
Sbjct: 524 AGTKQYKITEEAYKKLKEIIRRLRVEGGYVPEIGRVLH-DIEEEEKEGSVSVHSEKLAVA 582

Query: 538 FGLLNTPPGTTIRVVKNLRVC 558
           FG+     G TIR+VKNLR+C
Sbjct: 583 FGIARLCKGRTIRIVKNLRIC 603



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/389 (28%), Positives = 188/389 (48%), Gaps = 44/389 (11%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           P  LSLL  C S    KQIHA  +K  L++D  +  KL++ C  +  + S+++A  LF  
Sbjct: 6   PLCLSLLNICKSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAIS-LSDSLDYACRLFRY 64

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL-NSGLLPDDYSFPSLLKACACVGAEAL 140
            P PD+ + NT+ RG   S  P  ++  F+E+  NS   PD +SF  ++KA A     ++
Sbjct: 65  TPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAA--NLRSV 122

Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY 200
             G QLHC A+  GL+++L+V TTLI++Y EC  V  AR++F+ + EP  +++NA++TA 
Sbjct: 123 RVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTAC 182

Query: 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
            R         LF  +  RNL   +V ML+                              
Sbjct: 183 CRGGDMKGGRELFDLMPVRNLMSWNV-MLAG----------------------------- 212

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
                    + K G L+ A  +F  M  KD  +WS MIV +A +G   ++   F E+ + 
Sbjct: 213 ---------YTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRK 263

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
            + P+E +  G+L AC+  G ++ G    +   +K G+   +     ++D   + G +  
Sbjct: 264 GMRPNETSLTGVLSACAQAGALEFG-KILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLM 322

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNN 409
           A    + +  +   + W +++++ + H +
Sbjct: 323 AQLVFERIMNERNIVSWTSMMAALAMHGH 351


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 195/567 (34%), Positives = 318/567 (56%), Gaps = 40/567 (7%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           ++L  C+ FR +   +QI+   +K    +D+ V + L++  T+      +  A   FD +
Sbjct: 143 TMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTK---LGLIYDAKRYFDEM 199

Query: 83  PEPDIVLFNTMARGYSR-------------------------------SKTPIRAIFLFV 111
           PE ++V+ NTM  G  R                               +     A+ +F 
Sbjct: 200 PERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFR 259

Query: 112 ELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE 171
           E+  +G   D ++F S+L AC  +   AL EGKQ+H + I+     N++V + L+++Y++
Sbjct: 260 EMRLAGFAMDQFTFGSVLTACGSL--LALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSK 317

Query: 172 CSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSA 231
           C  +++A  +F+ + +  V+S+ A++  Y ++    EA+ +F E+Q   ++P D T+ S 
Sbjct: 318 CRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSV 377

Query: 232 LSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDT 291
           +SSCA L SL+ G   H      GL  ++ V+ ALI ++ KCG  +++  +F  M+ +D 
Sbjct: 378 ISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDE 437

Query: 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYS 351
            +W+A++  YA  G+ +++I +FE M+   + PD +TF+G+L ACS  GLV++G  YF S
Sbjct: 438 VSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFES 497

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
           M  ++GI+P + H  C++DLLGRAGRL+EA  FI+ +P     + W TLLSSC  H ++ 
Sbjct: 498 MIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDME 557

Query: 412 LAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVN 471
           + K   + +  L+  +   YV+LS+L A  G+W+ V  LR+ M+D+ V K PG S I+  
Sbjct: 558 IGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYK 617

Query: 472 NVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHS 531
             V  F + D    +   +   L++L  ++   GYVPD S V H D+E+ EK   L +HS
Sbjct: 618 GKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVLH-DVEESEKIKMLNHHS 676

Query: 532 EKLAITFGLLNTPPGTTIRVVKNLRVC 558
           EKLAI FGL+  PPG  IRV+KNLRVC
Sbjct: 677 EKLAIAFGLIFVPPGLPIRVIKNLRVC 703



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 116/492 (23%), Positives = 224/492 (45%), Gaps = 76/492 (15%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K++H + +KT  Q +  +   LI   T      ++ +AH +FD IP+P++  +NT+   Y
Sbjct: 25  KKLHCLILKTIKQPETFLSNNLI---TAYYKLGNLAYAHHVFDHIPQPNLFSWNTILSVY 81

Query: 98  SR-----SKTPIRAIFLFVELLNSGLLPDDYS-----------FPSLLKACA-------- 133
           S+         I  +  F + ++  L    Y+           +  +LK  A        
Sbjct: 82  SKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITF 141

Query: 134 ------CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE---------------- 171
                 C     ++ G+Q++   +K G  S+++V + L+++Y +                
Sbjct: 142 STMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPE 201

Query: 172 ---------------CSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
                          C  +E ++R+F  + E   +S+  +IT   ++    EAL +FRE+
Sbjct: 202 RNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREM 261

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           +         T  S L++C  L +L  GK IH Y+ +      V V +AL+DM++KC  +
Sbjct: 262 RLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSI 321

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
             A +VF  M  K+  +W+AM+V Y  +G   +++ +F EM +  V PD+ T   ++ +C
Sbjct: 322 KSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSC 381

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           ++   ++EG   F+      G++  I     ++ L G+ G  + ++R   E+ I+   + 
Sbjct: 382 ANLASLEEGAQ-FHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRD-EVS 439

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSH-----GGDYVILSNLCARAGRWED-VDYL 450
           W  LL   + +   G A + I  +FE   +H     G  ++ + + C+RAG  E  + Y 
Sbjct: 440 WTALL---AGYAQFGKANETIG-LFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYF 495

Query: 451 RKLMKDRGVLKV 462
             ++K+ G++ +
Sbjct: 496 ESMIKEHGIMPI 507



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 146/366 (39%), Gaps = 76/366 (20%)

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
           + SLLK C    ++   + K+LHC  +K       ++   LI  Y +  ++  A  +F++
Sbjct: 8   YASLLKLCC--ESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDH 65

Query: 185 ISEPCVVSYNAIITAYAR---SSRPNEALSL--FRE------------------------ 215
           I +P + S+N I++ Y++    S+  +  +L  FR+                        
Sbjct: 66  IPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVY 125

Query: 216 ---LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
              L++  +    +T  + L  C+    +DLG+ I+  I K+G    V V + L+DM+ K
Sbjct: 126 KLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTK 185

Query: 273 CGRLDDAVSVFDNM-------------------------------SGKDTQAWSAMIVAY 301
            G + DA   FD M                                 +D+ +W+ MI   
Sbjct: 186 LGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGL 245

Query: 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN---YFYSMRDKYGI 358
             +G   +++ MF EM  A  + D+ TF  +L AC     + EG     Y      K  +
Sbjct: 246 MQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNV 305

Query: 359 VPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
             G      +VD+  +   +  A      +P K+  I W  +L     +   G +++ ++
Sbjct: 306 FVG----SALVDMYSKCRSIKSAETVFKRMPQKNV-ISWTAML---VGYGQNGFSEEAVK 357

Query: 419 RIFELD 424
             FE+ 
Sbjct: 358 IFFEMQ 363


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 201/545 (36%), Positives = 306/545 (56%), Gaps = 18/545 (3%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKT-HLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           S LP C+    L   +++HA  IK   L  +  V + L++      T   +  A  +FD 
Sbjct: 276 SALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDM---YATHEQVGKARQVFDM 332

Query: 82  IPEP--DIVLFNTMARGYSRSKTPIRAIFLFVEL-LNSGLLPDDYSFPSLLKACACVGAE 138
           +P+    + ++N M  GY+++     A+ LF  +   +G +P + +  S+L ACA   +E
Sbjct: 333 VPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACA--RSE 390

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
           A    + +H + +K G+  N +V   L+++YA     + ARRIF  +  P VVS+N +IT
Sbjct: 391 AFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLIT 450

Query: 199 AYARSSRPNEALSLFRELQ---ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
                    +A  L RE+Q   E  + P  +T+++ L  CA+L +   GK IH Y  ++ 
Sbjct: 451 GCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHA 510

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
           LD  V V +AL+DM+AKCG L  + +VFD +  ++T  W+ +I+AY  HG G ++ ++F+
Sbjct: 511 LDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFD 570

Query: 316 EMMKA-QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
            M  + +  P+E+TF+  L ACSH+G+VD G   F++M   +G+ P      C+VD+LGR
Sbjct: 571 RMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGR 630

Query: 375 AGRLDEAYRFIDELPIKSTPI-LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI 433
           AGRLDEAY  +  +      +  W T+L +C  H N+ L +   ER+ EL+      YV+
Sbjct: 631 AGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVL 690

Query: 434 LSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKA 493
           L N+ + AG+W     +R  M+ RGV K PGCS IEV+  +  F +G+  H  S ++   
Sbjct: 691 LCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAH 750

Query: 494 LDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVK 553
           ++ L  E+   GY PDTS V H DM+D +K   LR HSEKLAI FGLL   PG TIRV K
Sbjct: 751 MEALWGEMVARGYTPDTSCVLH-DMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAK 809

Query: 554 NLRVC 558
           NLRVC
Sbjct: 810 NLRVC 814



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 153/314 (48%), Gaps = 12/314 (3%)

Query: 123 YSFPSLLKACACV--GAEALEEGKQLHCFAIKLGL--NSNLYVCTTLINLYAECSDVEAA 178
           ++  S+L+A + +   A A+  G++ H FA+K GL      +    L+++YA    V  A
Sbjct: 163 FTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADA 222

Query: 179 RRIFENIS--EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236
           +R+F   +     VV++N +++   +S   +EA+    ++    ++P  VT  SAL +C+
Sbjct: 223 QRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACS 282

Query: 237 LLGSLDLGKWIHEY-IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM--SGKDTQA 293
            L  LD+G+ +H Y IK   L     V +AL+DM+A   ++  A  VFD +  SGK    
Sbjct: 283 RLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGM 342

Query: 294 WSAMIVAYATHGQGHKSILMFEEM-MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
           W+AMI  YA  G   +++ +F  M  +A   P E T   +L AC+ +     G    +  
Sbjct: 343 WNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAF-AGKEAVHGY 401

Query: 353 RDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGL 412
             K G+         ++D+  R G+ D A R    + +    + W TL++ C    ++  
Sbjct: 402 VVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDV-VSWNTLITGCVVQGHVAD 460

Query: 413 AKQVIERIFELDDS 426
           A Q+   + +L++ 
Sbjct: 461 AFQLAREMQQLEEG 474


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 187/479 (39%), Positives = 287/479 (59%), Gaps = 14/479 (2%)

Query: 35  RGLKQIHAVTIKTHLQNDLNVLTKLINF---CTQNPTTSSMEHAHLLFDRIPEPDIVLFN 91
           R  +  H    K  L ND + +  ++     C +N        A  +FD I E D+V +N
Sbjct: 134 RMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGV------ARKVFDEITEKDLVSWN 187

Query: 92  TMARGYSRSKTPIRAIFLFVELLN-SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFA 150
           ++  GY++      A+ +F  L   SG  PD+ S  S+L AC  +G   LE G+ +  F 
Sbjct: 188 SLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGD--LELGRWVEGFV 245

Query: 151 IKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEAL 210
           ++ G+  N Y+ + LI++Y++C ++ ++RRIF+ +     +++NA I+AYA++   +EA+
Sbjct: 246 VERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAI 305

Query: 211 SLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270
           SLF  ++E  + P  VT+ + LS+CA +G+LDLGK + EY    GL   + V TALIDM+
Sbjct: 306 SLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMY 365

Query: 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK--AQVSPDEIT 328
           AKCG L+ A  VF++M  K+  +W+AMI A A+HG+  +++ +FE M        P++IT
Sbjct: 366 AKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDIT 425

Query: 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388
           F+ LL AC H GLVDEG+  F  M   +G+VP I+HY CMVDLL RAG L EA+  I+++
Sbjct: 426 FVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKM 485

Query: 389 PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVD 448
           P K   +    L S+C    N+ + ++VI+ + ELD S+ G+Y+I S +      W+D  
Sbjct: 486 PEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAA 545

Query: 449 YLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYV 507
            +R LM++ GV K PGCS IEV N +REF SGDG+   S D++  +D L +ELK  GY+
Sbjct: 546 RMRALMRENGVTKTPGCSWIEVGNQLREFLSGDGLTLDSIDVRNIIDLLYEELKKEGYL 604



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 231/433 (53%), Gaps = 35/433 (8%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI-P 83
           LSLL +C S + L+QIH        Q  ++ + K  +  +Q+ +     ++ L+F  I P
Sbjct: 25  LSLLKQCPSTKTLQQIHT-------QFTIHSIHKPNHLLSQSISLKDFTYSTLIFSHITP 77

Query: 84  EPDIVLFNTMARGYSRS--KTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
            P+   FN M R  + +    P+  + L+ ++    + P++++FP +  ACA +  E + 
Sbjct: 78  HPNDYAFNIMLRATTTTWHDYPL-TLHLYHQMKTLNISPNNFTFPFVFLACANL--EEIR 134

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
             +  HC   KLGL+++ +   +++ +Y  C +   AR++F+ I+E  +VS+N++++ YA
Sbjct: 135 MARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYA 194

Query: 202 RSSRPNEALSLFRELQERN-LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
           +     EA+ +F  L+E +  +P +++++S L +C  LG L+LG+W+  ++ + G+    
Sbjct: 195 KLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNS 254

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            + +ALI M++KCG L  +  +FD M  +D   W+A I AYA +G   ++I +F  M + 
Sbjct: 255 YIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKEN 314

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH----YGCMVDLLGRAG 376
            V P+++T   +L AC+  G +D G        D+Y    G++H       ++D+  + G
Sbjct: 315 GVDPNKVTLTAVLSACASIGALDLG-----KQMDEYATHRGLQHDIFVATALIDMYAKCG 369

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD------ 430
            L+ A R  +++P K+    W  ++S+ +SH   G AK+ +  +FE     GG       
Sbjct: 370 SLESAQRVFNDMPRKNDAS-WNAMISALASH---GKAKEALS-LFERMSDEGGSARPNDI 424

Query: 431 -YVILSNLCARAG 442
            +V L + C  AG
Sbjct: 425 TFVSLLSACVHAG 437


>gi|115476560|ref|NP_001061876.1| Os08g0434000 [Oryza sativa Japonica Group]
 gi|42407498|dbj|BAD10615.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|42409483|dbj|BAD09839.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623845|dbj|BAF23790.1| Os08g0434000 [Oryza sativa Japonica Group]
          Length = 601

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 178/423 (42%), Positives = 258/423 (60%), Gaps = 4/423 (0%)

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
           AL   +QLH   +  G + +  + T+L++ YA C D ++AR++F+ +     +++N +IT
Sbjct: 140 ALAHARQLHANVVAEGHSPDALLATSLVSSYAACGDGDSARKVFDEMPVRDTIAWNVLIT 199

Query: 199 AYARSSRPNEALSLFRELQ--ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
            Y R+ R  +AL LF  ++  E   +P DVT +  L +C  LG+LD G+ + EY   +G 
Sbjct: 200 CYTRNRRTKDALKLFDAMRGGENGAEPDDVTCILLLQACTSLGALDFGEKVWEYAVDHGY 259

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
              +KV  +LI M+ KCG +D A  VF     K    WSAMI   A++G G  +I  FEE
Sbjct: 260 GGELKVRNSLITMYTKCGCVDKAYQVFCETPKKSVVTWSAMISGLASNGFGKDAISAFEE 319

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M ++ V+PDE TF G+L ACSH+GLVDEG+ +F  M  +Y + P + HYGCMVDL+GRAG
Sbjct: 320 MGRSGVAPDEQTFTGVLSACSHSGLVDEGFKFFDIMCYEYQLKPNVHHYGCMVDLMGRAG 379

Query: 377 RLDEAYRF-IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
            LD+AY   + ++ +     +WRTLL +C  H ++ L ++VI  + EL     GDYV+L 
Sbjct: 380 LLDQAYELVVKDMRVAPDATIWRTLLGACRIHGHIDLGERVINHLIELKAQQAGDYVLLL 439

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           N  A    W  V  +RKLMK++G+   PGC+++E+N  + EF + D  H    ++ + LD
Sbjct: 440 NTYAAVEDWGKVAEVRKLMKEKGIQTTPGCTTVELNGEIHEFIAADASHPRKAEIYEKLD 499

Query: 496 ELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNL 555
           E+ K L++ GYVP+ S   H D++ E KE AL YHSEKLAI F LL TP    IR+ KNL
Sbjct: 500 EINKHLRIAGYVPNVSSELH-DLDSEGKECALAYHSEKLAIAFALLVTPQHRPIRLAKNL 558

Query: 556 RVC 558
           RVC
Sbjct: 559 RVC 561



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 23  NALSL---LPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLF 79
           NA SL   L  C +    +Q+HA  +      D  + T L+   +        + A  +F
Sbjct: 127 NAFSLSIVLGHCRALAHARQLHANVVAEGHSPDALLATSLV---SSYAACGDGDSARKVF 183

Query: 80  DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN--SGLLPDDYSFPSLLKACACVGA 137
           D +P  D + +N +   Y+R++    A+ LF  +    +G  PDD +   LL+AC  +GA
Sbjct: 184 DEMPVRDTIAWNVLITCYTRNRRTKDALKLFDAMRGGENGAEPDDVTCILLLQACTSLGA 243

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
             L+ G+++  +A+  G    L V  +LI +Y +C  V+ A ++F    +  VV+++A+I
Sbjct: 244 --LDFGEKVWEYAVDHGYGGELKVRNSLITMYTKCGCVDKAYQVFCETPKKSVVTWSAMI 301

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEYIKKYGL 256
           +  A +    +A+S F E+    + P + T    LS+C+  G +D G K+      +Y L
Sbjct: 302 SGLASNGFGKDAISAFEEMGRSGVAPDEQTFTGVLSACSHSGLVDEGFKFFDIMCYEYQL 361

Query: 257 DKYVKVNTALIDMHAKCGRLDDA--VSVFDNMSGKDTQAWSAMIVAYATHGQ---GHKSI 311
              V     ++D+  + G LD A  + V D     D   W  ++ A   HG    G + I
Sbjct: 362 KPNVHHYGCMVDLMGRAGLLDQAYELVVKDMRVAPDATIWRTLLGACRIHGHIDLGERVI 421

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDE 344
               E +KAQ + D +  L    A    G V E
Sbjct: 422 NHLIE-LKAQQAGDYVLLLNTYAAVEDWGKVAE 453


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 188/495 (37%), Positives = 298/495 (60%), Gaps = 8/495 (1%)

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
           S++  A  +FD  P  +I ++N M +  + +     A+    ++   G+  D YS+   L
Sbjct: 298 SALPAARQVFDEAPVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGL 357

Query: 130 KACACVGAEALEEG---KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS 186
           KAC    A  L      +++H  AI+ G   + +V TTLI+ YA+   V  A R+F ++ 
Sbjct: 358 KACIAASASHLPASARVREMHAHAIRRGYGLHTHVATTLIDCYAKLGIVSYAERVFTSMP 417

Query: 187 EPCVVSYNAIITAYARSSRPNEALSLFREL--QERNLKPTDVTMLSALSSCALLGSLDLG 244
           +  +VS++A+I  YA++ RP +A+ +F+E+   + +L P  +T++S L +CA + +L  G
Sbjct: 418 DRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALGQG 477

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYAT 303
           K +H YI + G D  V V  AL+ M+ KCG L+    +F+ +  + +  +W+++I  Y  
Sbjct: 478 KVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLISGYGM 537

Query: 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK 363
           HG G +S+ +FEEM++  +SP+ ITF+ +L ACSH GLV++G   F SM + Y + P  +
Sbjct: 538 HGFGRESLQVFEEMIEEGISPNIITFVSVLGACSHVGLVEQGKKLFESMVE-YNVTPRAE 596

Query: 364 HYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
           HY CMVDLLGRAGRLDEA   I  + I+ +P +W +LL +C  H ++  A+     +F+L
Sbjct: 597 HYACMVDLLGRAGRLDEAVELIQSMRIQPSPQVWGSLLGACRIHGHVEYAEMACSHLFDL 656

Query: 424 DDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGV 483
           +  + G+YV+L+++ ARA     VD L++L+++  + KVPGCS IEV   +  F S D  
Sbjct: 657 EPRNAGNYVLLADIYARAKLQNQVDVLKELLEEHALEKVPGCSWIEVKKKLYSFVSVDNK 716

Query: 484 HSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNT 543
           +    +LQ  + E V ++K  GYVPDT  V + D+E+EEKE  L  HSEKLA+ FGL+ T
Sbjct: 717 NPQVEELQALIGEFVTQMKNEGYVPDTRSVLY-DIEEEEKERILLGHSEKLAVAFGLIKT 775

Query: 544 PPGTTIRVVKNLRVC 558
             G  IR+ KNLR+C
Sbjct: 776 GSGEAIRITKNLRLC 790



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 141/311 (45%), Gaps = 11/311 (3%)

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179
           P   ++ SLL A A     AL         A  +   S+ ++ T LI  YA  S + AAR
Sbjct: 246 PTQRTYESLLLAAARARDTALAAAVHRRLEADPV-FRSDPFLSTRLIEAYAALSALPAAR 304

Query: 180 RIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG 239
           ++F+      +  +NA++ A A +    EAL+   ++    +     +    L +C    
Sbjct: 305 QVFDEAPVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGLKACIAAS 364

Query: 240 SLDLG-----KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAW 294
           +  L      + +H +  + G   +  V T LID +AK G +  A  VF +M  ++  +W
Sbjct: 365 ASHLPASARVREMHAHAIRRGYGLHTHVATTLIDCYAKLGIVSYAERVFTSMPDRNLVSW 424

Query: 295 SAMIVAYATHGQGHKSILMFEEMMK--AQVSPDEITFLGLLYACSHTGLVDEGWN-YFYS 351
           SAMI  YA + +   +I +F+EMM   A + P+ IT + +L+AC+    + +G   + Y 
Sbjct: 425 SAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALGQGKVLHAYI 484

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
           +R  + ++  +     ++ +  + G L+      + +  +   + W +L+S    H    
Sbjct: 485 LRRGFDLLVSV--LNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLISGYGMHGFGR 542

Query: 412 LAKQVIERIFE 422
            + QV E + E
Sbjct: 543 ESLQVFEEMIE 553



 Score = 45.4 bits (106), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 19/232 (8%)

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKK---YGLDKYVKVNTALIDMHAKCGRLDDA 279
           PT  T  S L + A      L   +H  ++    +  D ++  +T LI+ +A    L  A
Sbjct: 246 PTQRTYESLLLAAARARDTALAAAVHRRLEADPVFRSDPFL--STRLIEAYAALSALPAA 303

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC--- 336
             VFD    K+   W+AM+ A A    G +++    +M +  V  D  ++   L AC   
Sbjct: 304 RQVFDEAPVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGLKACIAA 363

Query: 337 --SH---TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIK 391
             SH   +  V E   + +++R  YG+   +     ++D   + G +  A R    +P +
Sbjct: 364 SASHLPASARVRE--MHAHAIRRGYGLHTHVA--TTLIDCYAKLGIVSYAERVFTSMPDR 419

Query: 392 STPILWRTLLSSCSSHNNLGLAKQVIERIFELD-DSHGGDYVILSNLCARAG 442
           +  + W  ++   + +   G A Q+ + +   D D       I+S L A AG
Sbjct: 420 NL-VSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAG 470


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 194/524 (37%), Positives = 306/524 (58%), Gaps = 10/524 (1%)

Query: 40  IHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           +H   + + L  D  + TKLIN +C       S++HA  +FD   E  I ++N + R  +
Sbjct: 96  VHHRLVGSGLDQDPYLATKLINMYCD----LGSVDHACKVFDETREKTIFVWNAIFRALA 151

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC--VGAEALEEGKQLHCFAIKLGLN 156
            +      + L+ ++   G+  + +++  +LKAC    +    L +GK++H   ++ G  
Sbjct: 152 MASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHGYE 211

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR-- 214
            +++V TTL+++YA    V  A  +F  + +  +VS++A+I  YA++  P +AL LF+  
Sbjct: 212 GHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIM 271

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
            L+  +  P  +TM+S L +CA L +L+ GK +H Y+ + GLD  + V   LI M+ +CG
Sbjct: 272 MLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITMYGRCG 331

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
            +     VFD M  +D  +W+++I  Y  HG G K+I +FE M+   VSP  ITF+ +L 
Sbjct: 332 EISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLC 391

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           ACSH GLV+E    F SM +KY I P ++HY CMVD+LGRA RLDEA   I  +  K  P
Sbjct: 392 ACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNMDFKPGP 451

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454
            +W +LL SC  H N+ LA++    +FEL+  + G+YV+LS++ A++  W DV  +RK +
Sbjct: 452 TVWGSLLGSCRIHCNVELAERASAMLFELEPKNAGNYVLLSHIYAKSRMWNDVRRVRKQL 511

Query: 455 KDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVH 514
           + RG+ K+P CS IEV   +    S +  +    +L   L  L+ E+K  GYVP T++V 
Sbjct: 512 ESRGLQKIPSCSWIEVKRKIYSLVSIEEYNPQIEELCAFLITLLTEIKNQGYVPQTNVVT 571

Query: 515 HGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           + D+++EEKE  +  HS KLA+ FGL+NT  G  IR+  NLR+C
Sbjct: 572 Y-DLDEEEKERIVLGHSGKLAVAFGLINTSKGEIIRISNNLRLC 614



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 173/358 (48%), Gaps = 19/358 (5%)

Query: 111 VELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA 170
           V+LL     P   +F  L+ +C  +   +L +G  +H   +  GL+ + Y+ T LIN+Y 
Sbjct: 63  VQLLCCEPNPTKKTFELLINSC--IEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYC 120

Query: 171 ECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLS 230
           +   V+ A ++F+   E  +  +NAI  A A +SR  + L L+ ++    +     T   
Sbjct: 121 DLGSVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTY 180

Query: 231 ALSSCAL----LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
            L +C +    +  L  GK IH +I ++G + +V V T L+D++A+ G +  A SVF  M
Sbjct: 181 VLKACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAM 240

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMM--KAQVSPDEITFLGLLYACSHTGLVDE 344
             K+  +WSAMI  YA +    K++ +F+ MM       P+ IT + +L AC+    ++ 
Sbjct: 241 PDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEH 300

Query: 345 GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSC 404
           G    ++   + G+   +     ++ + GR G +    R  D +  K   I W +L+S  
Sbjct: 301 G-KLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMK-KRDVISWNSLISIY 358

Query: 405 SSHNNLGLAKQVIERIFELDDSHGGD-----YVILSNLCARAGRWEDVDYLRKLMKDR 457
             H   GL K+ I+ IFE   + G       ++ +   C+ AG  E+   L + M ++
Sbjct: 359 GMH---GLGKKAIQ-IFENMINRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNK 412


>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 178/498 (35%), Positives = 298/498 (59%), Gaps = 37/498 (7%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           ++ L  C     LK+IHA  +K  L     ++TK+++ C      S +++A ++F ++  
Sbjct: 11  VTTLRNCPKIAELKKIHAHIVKLSLSQSNFLVTKMLDLC---DNLSHVDYATMIFQQLEN 67

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNS-GLLPDDYSFPSLLKACACVGAEALEEG 143
           P++  +N + R Y+ +     AI +F ++L +    PD ++FP ++K+CA +    L  G
Sbjct: 68  PNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRL--G 125

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE---------------- 187
           +Q+H    K G  ++      LI++Y +C D+  A +++E ++E                
Sbjct: 126 QQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRL 185

Query: 188 -------------PC--VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232
                        PC  +VS+  +I  YAR     +AL +FRE+Q   ++P +++++S L
Sbjct: 186 GQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVL 245

Query: 233 SSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ 292
            +CA LG+L++GKWIH+Y +K G  K   V  AL++M+AKCG +D+A  +F+ M  KD  
Sbjct: 246 PACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVI 305

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
           +WS MI   A HG+G+ +I +FE+M KA V+P+ +TF+G+L AC+H GL +EG  YF  M
Sbjct: 306 SWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVM 365

Query: 353 RDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGL 412
           R  Y + P I+HYGC+VDLLGR+G++++A   I ++P++     W +LLSSC  H+NL +
Sbjct: 366 RVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHNLEI 425

Query: 413 AKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNN 472
           A   +E++ +L+    G+YV+L+N+ A+  +WE V  +RKL++ + + K PGCS IEVNN
Sbjct: 426 AVVAMEQLLKLEPEESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPGCSLIEVNN 485

Query: 473 VVREFFSGDGVHSYSTDL 490
           +V+EF SGD    +S ++
Sbjct: 486 LVQEFVSGDDSKPFSQEV 503


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 190/488 (38%), Positives = 290/488 (59%), Gaps = 5/488 (1%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +E    LF+ +P  D++ + +M  G   +     A+F+F ++L SG+ P   +F  +L A
Sbjct: 152 VEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSA 211

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           CA   A     G Q+H   +KLG   + ++  +LI  YA C  +E A +IF       VV
Sbjct: 212 CA--NAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVV 269

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
            + A++TAY  +++  +AL +F ++ +    P   T    L +C  L +LD GK IH   
Sbjct: 270 KWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKGKEIHTMA 329

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            K GL+  V V  +L+ M+ +CG ++ AV+VF N++ KD  +W+++IV  A HG G  ++
Sbjct: 330 IKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWAL 389

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYF-YSMRDKYGIVPGIKHYGCMVD 370
           + F +M++  V P+EITF GLL ACS +G++ +G  +F Y  R K  ++   +HY CMVD
Sbjct: 390 IFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGRCFFEYISRYKSNVLRP-QHYACMVD 448

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430
           +LGR G+LDEA   +  +P+K+  ++W  LLS+C  H+NL +A++  + I +L+ +    
Sbjct: 449 ILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRVHSNLEVAERAAKHILDLEPNCSSA 508

Query: 431 YVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDL 490
           YV+LSN+ A AGRW DV  +R  MK  G++K PG S + +     EF S D  H  S  +
Sbjct: 509 YVLLSNIYASAGRWADVSRMRVKMKQGGLVKQPGSSWVVLRGKKHEFLSADRSHPLSERI 568

Query: 491 QKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIR 550
            + LD L K+LK  GYVPD     H D+EDE+KE  L +HSE+LAI FGL++T  G+TI 
Sbjct: 569 YEKLDWLGKKLKEFGYVPDQKFALH-DVEDEQKEEMLSFHSERLAIAFGLVSTVEGSTIT 627

Query: 551 VVKNLRVC 558
           V+KNLRVC
Sbjct: 628 VMKNLRVC 635



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 99/418 (23%), Positives = 183/418 (43%), Gaps = 74/418 (17%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           ++ A L+FD+IP P++ L+  M  GY+R+     A+ LF  +     + D  S+ S++K 
Sbjct: 28  LDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMS----VRDVVSWNSMIKG 83

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLY---------VCTTLINLYAECSDVEAARRIF 182
           C   G                LG+ + L+           TT++N Y +   VE A+R+F
Sbjct: 84  CLDCG---------------NLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLF 128

Query: 183 ENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNL--------------------- 221
            ++    V ++NA++  Y  + R  E + LF E+  R++                     
Sbjct: 129 LDMHVKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALF 188

Query: 222 ----------KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271
                     +PT  T    LS+CA     +LG  +H ++ K G   +  ++ +LI  +A
Sbjct: 189 VFKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYA 248

Query: 272 KCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLG 331
            C +++ A  +F+    K+   W+A++ AY  + +   ++ +F +M K    P++ TF  
Sbjct: 249 NCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSI 308

Query: 332 LLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA---YRFIDEL 388
            L AC     +D+G    ++M  K G+   +     +V +    G ++ A   +R I+E 
Sbjct: 309 TLKACCGLEALDKG-KEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEK 367

Query: 389 PIKSTPILWRTLLSSCSSHN----NLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
            I S    W +++   + H      L    Q+I R     D +   +  L + C+R+G
Sbjct: 368 DIVS----WNSIIVGSAQHGFGLWALIFFNQMIRRGV---DPNEITFTGLLSACSRSG 418


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 196/520 (37%), Positives = 292/520 (56%), Gaps = 35/520 (6%)

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
            +++ A  LFD   + ++VL+NT+   Y+R      A+ +  E+L  G  PD  +  S +
Sbjct: 281 GAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAI 340

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC 189
            A A +    L  GK  H + I+ GL     +   +I++Y +C   E A R+F+ +S   
Sbjct: 341 SASAQL--VDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKT 398

Query: 190 VVSYNAIITAYARS-------------------------------SRPNEALSLFRELQE 218
           VVS+N++   + R+                               S   +A+ LFRE+Q 
Sbjct: 399 VVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQG 458

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
             +K   VTM+   S+C  LG+ +L KW+H YI+K G+   +++NTAL+DM A+CG    
Sbjct: 459 EGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQS 518

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A+ VF+ M+ +D  AW+A I   A  G G  +  +F +M+   V PD + F+ +L ACSH
Sbjct: 519 AMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSH 578

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
            G V++G + F  M D +GI P I+HYGCMVDLLGRAG L EA+  I  +P++   ++W 
Sbjct: 579 GGQVEQGLHIFSLMED-HGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWG 637

Query: 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458
           +LL++C  H N+ +A    ERI EL     G +V+LSN+ A AG+W DV  +R  ++++G
Sbjct: 638 SLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKG 697

Query: 459 VLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDM 518
           V KVPG SS++VN V+ EF SGD  H   T +   L E+       G++PD S V   D+
Sbjct: 698 VRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLL-DV 756

Query: 519 EDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +++EKE  L  HSEKLAI FGL+ T     IRVVKNLR+C
Sbjct: 757 DEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMC 796



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 125/401 (31%), Positives = 215/401 (53%), Gaps = 17/401 (4%)

Query: 31  CTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDI 87
           C +   LKQ+H    K  L    + LTKL+N   +  +  S+++A   F+   E    D 
Sbjct: 35  CKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDD 94

Query: 88  VLF--NTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
            LF  N++ RGYS +     AI L+V +L  G+ P+ Y+FP +L  C  + A    EG Q
Sbjct: 95  ALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAA--FCEGIQ 152

Query: 146 LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSR 205
           +H   +K+GL  ++++   LI+ YAEC  ++   ++FE +SE  VVS+ ++I  YAR  R
Sbjct: 153 VHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDR 212

Query: 206 PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTA 265
           P EA+SLF E+ E  ++P+ VTM+  +S+CA L  LD+G+ +  YI + GL     +  A
Sbjct: 213 PKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNA 272

Query: 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
           L+DM+ KCG +D A  +FD    ++   ++ ++  YA  G   +++ + +EM++    PD
Sbjct: 273 LVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPD 332

Query: 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY----GCMVDLLGRAGRLDEA 381
            +T L  + A +   LVD    ++  +   Y I  G++ +      ++D+  + G+ + A
Sbjct: 333 RVTMLSAISASAQ--LVDL---FYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMA 387

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
            R  D +  K T + W +L +    + ++  A +V  +I E
Sbjct: 388 CRVFDLMSNK-TVVSWNSLTAGFIRNGDVESAWEVFNQIPE 427



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/473 (25%), Positives = 226/473 (47%), Gaps = 45/473 (9%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           P  LS   +  +F    Q+H   +K  L+ D+ +   LI+F  +      M+H H +F+ 
Sbjct: 135 PFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAE---CGHMDHGHKVFEG 191

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           + E ++V + ++  GY+R   P  A+ LF E++ +G+ P   +   ++ ACA +    L+
Sbjct: 192 MSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKL--RDLD 249

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G+++  +  +LGL  N  +   L+++Y +C  ++AA+R+F+   +  +V YN I++ YA
Sbjct: 250 MGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYA 309

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           R     EAL++  E+ ++  +P  VTMLSA+S+ A L  L  GK  H Y+ + GL+ +  
Sbjct: 310 RQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDS 369

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK------------ 309
           +   +IDM+ KCG+ + A  VFD MS K   +W+++   +  +G                
Sbjct: 370 IGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERN 429

Query: 310 -------------------SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350
                              +I +F EM    +  D +T +G+  AC + G   E   + +
Sbjct: 430 AVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLG-APELAKWVH 488

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN- 409
           +  +K GI   ++    +VD+  R G    A +  +++  +     W   + + +   N 
Sbjct: 489 TYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSA-WTAAIGTMAMEGNG 547

Query: 410 ---LGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459
               GL  Q++ +  + D      +V +   C+  G+ E   ++  LM+D G+
Sbjct: 548 EGATGLFNQMLIQGVKPDVVL---FVQVLTACSHGGQVEQGLHIFSLMEDHGI 597


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 204/614 (33%), Positives = 323/614 (52%), Gaps = 95/614 (15%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHL----- 77
           S +  C S R L   +Q+HA    +              F T +   SS+ H +L     
Sbjct: 109 SAIKSCASLRALDPGQQLHAFAAAS-------------GFLTDSIVASSLTHMYLKCDRI 155

Query: 78  -----LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK-- 130
                LFDR+P+ D+V+++ M  GYSR      A  LF E+ + G+ P+  S+  +L   
Sbjct: 156 LDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGF 215

Query: 131 ----------------------------ACACVGAEALEE---GKQLHCFAIKLGLNSNL 159
                                       +C       LE+   G Q+H + IK GL S+ 
Sbjct: 216 GNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDK 275

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPN------------ 207
           +V + ++++Y +C  V+   R+F+ + E  + S NA +T  +R+   +            
Sbjct: 276 FVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQ 335

Query: 208 -----------------------EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
                                  EAL LFR++Q   ++P  VT+ S + +C  + +L  G
Sbjct: 336 KMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHG 395

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
           K IH +  + G+   V V +ALIDM+AKCGR+  A   FD MS  +  +W+A++  YA H
Sbjct: 396 KEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMH 455

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364
           G+  +++ MF  M+++   PD +TF  +L AC+  GL +EGW  + SM +++GI P ++H
Sbjct: 456 GKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEH 515

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
           Y C+V LL R G+L+EAY  I E+P +    +W  LLSSC  HNNL L +   E++F L+
Sbjct: 516 YACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLE 575

Query: 425 DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVH 484
            ++ G+Y++LSN+ A  G W++ + +R++MK +G+ K PG S IEV + V    +GD  H
Sbjct: 576 PTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSH 635

Query: 485 SYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTP 544
               D+ + LD+L  ++K  GY+P T+ V   D+E+++KE  L  HSEKLA+  GLLNT 
Sbjct: 636 PQMKDILEKLDKLNMQMKKSGYLPKTNFVLQ-DVEEQDKEQILCGHSEKLAVVLGLLNTS 694

Query: 545 PGTTIRVVKNLRVC 558
           PG  ++V+KNLR+C
Sbjct: 695 PGQPLQVIKNLRIC 708



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 114/490 (23%), Positives = 218/490 (44%), Gaps = 83/490 (16%)

Query: 32  TSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFN 91
            S    +Q HA+ ++ +L +D  + T L++F     + S+ + +  L   +P P +  F+
Sbjct: 14  ASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFS 73

Query: 92  TMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAI 151
           ++   ++RS      +  F  L    L+PD +  PS +K+CA +   AL+ G+QLH FA 
Sbjct: 74  SLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASL--RALDPGQQLHAFAA 131

Query: 152 KLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALS 211
             G  ++  V ++L ++Y +C  +  AR++F+ + +  VV ++A+I  Y+R     EA  
Sbjct: 132 ASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKE 191

Query: 212 LFRELQERNLKPTDVT---MLSALS---------------------------SCAL--LG 239
           LF E++   ++P  V+   ML+                              SC L  +G
Sbjct: 192 LFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVG 251

Query: 240 SLD---LGKWIHEYIKKYGLDKYVKVNTALIDMHAKC----------------------- 273
            L+   +G  +H Y+ K GL     V +A++DM+ KC                       
Sbjct: 252 CLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNA 311

Query: 274 --------GRLDDAVSVFDNMSGKDTQ----AWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
                   G +D A+ VF+    +  +     W+++I + + +G+  +++ +F +M    
Sbjct: 312 FLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYG 371

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
           V P+ +T   L+ AC +   +  G   + +S+R   GI   +     ++D+  + GR+  
Sbjct: 372 VEPNAVTIPSLIPACGNISALMHGKEIHCFSLRR--GIFDDVYVGSALIDMYAKCGRIQL 429

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI-FELDDSHGGDYVILS---N 436
           A R  D++   +  + W  ++   + H   G AK+ +E     L      D V  +   +
Sbjct: 430 ARRCFDKMSALNL-VSWNAVMKGYAMH---GKAKETMEMFHMMLQSGQKPDLVTFTCVLS 485

Query: 437 LCARAGRWED 446
            CA+ G  E+
Sbjct: 486 ACAQNGLTEE 495



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 119/248 (47%), Gaps = 4/248 (1%)

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC---SDVEAARRIFENI 185
           L  C      +L + +Q H   ++L L S+  + T+L++ YA     S  + +  +  ++
Sbjct: 5   LSQCLSSSTASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHL 64

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245
             P + S++++I A+ARS      L+ F  L    L P    + SA+ SCA L +LD G+
Sbjct: 65  PHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQ 124

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
            +H +    G      V ++L  M+ KC R+ DA  +FD M  +D   WSAMI  Y+  G
Sbjct: 125 QLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLG 184

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY 365
              ++  +F EM    V P+ +++ G+L    + G  DE    F  M  + G  P     
Sbjct: 185 LVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQ-GFWPDGSTV 243

Query: 366 GCMVDLLG 373
            C++  +G
Sbjct: 244 SCVLPAVG 251



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 127/293 (43%), Gaps = 50/293 (17%)

Query: 22  PNAL---SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PNA+   SL+P C +   L   K+IH  +++  + +D+ V + LI+   +      ++ A
Sbjct: 374 PNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAK---CGRIQLA 430

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
              FD++   ++V +N + +GY+        + +F  +L SG  PD  +F  +L ACA  
Sbjct: 431 RRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACA-- 488

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
                           + GL    + C      Y   S+        E+  EP +  Y  
Sbjct: 489 ----------------QNGLTEEGWRC------YNSMSE--------EHGIEPKMEHYAC 518

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           ++T  +R  +  EA S+ +E+     +P      + LSSC +  +L LG+   E  K + 
Sbjct: 519 LVTLLSRVGKLEEAYSIIKEMP---FEPDACVWGALLSSCRVHNNLSLGEIAAE--KLFF 573

Query: 256 LDKYVKVNTALI-DMHAKCGRLDDAVSVFDNMSGKDTQ---AWSAMIVAYATH 304
           L+     N  L+ +++A  G  D+   + + M  K  +    +S + V +  H
Sbjct: 574 LEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVH 626


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 207/602 (34%), Positives = 321/602 (53%), Gaps = 72/602 (11%)

Query: 23  NALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLF 79
           N L LL  C   + L   K+IH   +K     D +VL KL        + + +  A  LF
Sbjct: 10  NYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYL---SCNQVVLARRLF 66

Query: 80  DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEA 139
           D IP P ++L+N + R Y+ +     AI L+  +L+ G+ P+ Y++P +LKAC+  G  A
Sbjct: 67  DEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACS--GLLA 124

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
           +E+G ++H  A   GL S+++VCT L++ YA+C  +  A+R+F ++S   VV++NA+I  
Sbjct: 125 IEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAG 184

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL-----------------GSLD 242
            +     ++A+ L  ++QE  + P   T++  L +C  L                  S  
Sbjct: 185 CSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAM 244

Query: 243 LGKWIHEYIKKYGLDKYVKVNTALID-------------------MHAKC---------- 273
           +G ++     K  LD +  +  + ID                    H  C          
Sbjct: 245 IGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGF 304

Query: 274 -----------------GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
                            G++  A  VF+ M   D  +W+AMI+ Y  HG G +++ +F +
Sbjct: 305 ATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHD 364

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           ++   + PD+ITF+ LL +CSH+GLV EG  +F +M   + IVP ++H  CMVD+LGRAG
Sbjct: 365 LLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAG 424

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSN 436
            +DEA+ FI  +P +    +W  LLS+C  H N+ L ++V ++I  L     G++V+LSN
Sbjct: 425 LIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSN 484

Query: 437 LCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDE 496
           + + AGRW+D  ++R   KD G+ K+PGCS IE+N +V  F  GD  H   + + + L+E
Sbjct: 485 IYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEE 544

Query: 497 LVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLR 556
           L+ E+K +GY  + S V   D+E+EEKE  L YHSEKLAI FG+LN   G  I V KNLR
Sbjct: 545 LLVEMKRLGYQAECSFVFQ-DVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLR 603

Query: 557 VC 558
           VC
Sbjct: 604 VC 605


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 194/529 (36%), Positives = 313/529 (59%), Gaps = 12/529 (2%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP-DIVLFNTMAR 95
           ++Q+HA+++ T L + ++V   LI   ++N     ++ A  +F  + E  D V +N+M  
Sbjct: 157 IRQLHALSVVTGLDSYVSVGNALITSYSKN---GFLKEARRIFHWLSEDRDEVSWNSMVV 213

Query: 96  GYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155
            Y + +   +A+ L++E+   GL+ D ++  S+L A   V  + L  G Q H   IK G 
Sbjct: 214 AYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNV--QDLLGGLQFHAKLIKSGY 271

Query: 156 NSNLYVCTTLINLYAECSD-VEAARRIFENISEPCVVSYNAIITAYA-RSSRPNEALSLF 213
           + N +V + LI+LY++C   +   R++F+ IS P +V +N +I+ Y+      +EAL  F
Sbjct: 272 HQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECF 331

Query: 214 RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL-DKYVKVNTALIDMHAK 272
           R+LQ    +P D +++  +S+C+ + S   G+ +H    K  +    + VN ALI M++K
Sbjct: 332 RQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSK 391

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
           CG L DA ++FD M   +T ++++MI  YA HG G +S+ +F+ M++   +P  ITF+ +
Sbjct: 392 CGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISV 451

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L AC+HTG V++G  YF  M+ K+GI P   H+ CM+DLLGRAG+L EA R I+ +P   
Sbjct: 452 LAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDP 511

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452
               W  LL +C  H N+ LA +   R+ +LD  +   YV+L+N+ +  GR +D   +RK
Sbjct: 512 GFFXWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRK 571

Query: 453 LMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSL 512
           LM+DRGV K PGCS IEVN  +  F + D  H     +Q+ L+E+++++K VGY P+   
Sbjct: 572 LMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRS 631

Query: 513 VHHGD---MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
              G    +   E+E+ L +HSEKLA++FGL++T  G  I V KNLR+C
Sbjct: 632 ASVGGDDRVWQREEELRLGHHSEKLAVSFGLMSTREGEPILVFKNLRIC 680



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 194/400 (48%), Gaps = 25/400 (6%)

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
           S +E AH LFD +P+PD V +NT+   Y+R      A  LF+E+  + L  D ++   ++
Sbjct: 88  SYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGII 147

Query: 130 KACAC-VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP 188
            AC   VG       +QLH  ++  GL+S + V   LI  Y++   ++ ARRIF  +SE 
Sbjct: 148 TACGINVGLI-----RQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSED 202

Query: 189 C-VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
              VS+N+++ AY +    ++AL L+ E+  R L     T+ S L++   +  L  G   
Sbjct: 203 RDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQF 262

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGR-LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ 306
           H  + K G  +   V + LID+++KCG  + D   VFD +S  D   W+ MI  Y+ +  
Sbjct: 263 HAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYED 322

Query: 307 -GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGI-----VP 360
              +++  F ++      PD+ + + ++ ACS+     +G       R  +G+     +P
Sbjct: 323 LSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQG-------RQVHGLALKLDIP 375

Query: 361 G--IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
              I     ++ +  + G L +A    D +P  +T + + ++++  + H     +  + +
Sbjct: 376 SNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNT-VSYNSMIAGYAQHGMGFQSLHLFQ 434

Query: 419 RIFELDDSHGG-DYVILSNLCARAGRWEDVDYLRKLMKDR 457
           R+ E+D +     ++ +   CA  GR ED      +MK +
Sbjct: 435 RMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQK 474



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 149/323 (46%), Gaps = 43/323 (13%)

Query: 123 YSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF 182
           +SF   LK C  +    L  GK LH   IK  + ++ Y+    + LY++C  + AARR+F
Sbjct: 9   HSFRQFLKTC--IAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVF 66

Query: 183 EN-------------------------------ISEPCVVSYNAIITAYARSSRPNEALS 211
           ++                               + +P  VSYN +I AYAR      A  
Sbjct: 67  DHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQ 126

Query: 212 LFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271
           LF E++E  L     T+   +++C +  ++ L + +H      GLD YV V  ALI  ++
Sbjct: 127 LFLEMREAFLDMDGFTLSGIITACGI--NVGLIRQLHALSVVTGLDSYVSVGNALITSYS 184

Query: 272 KCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           K G L +A  +F  +S  +D  +W++M+VAY  H +G K++ ++ EM    +  D  T  
Sbjct: 185 KNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLA 244

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR-LDEAYRFIDELP 389
            +L A ++   +  G   F++   K G          ++DL  + G  + +  +  DE+ 
Sbjct: 245 SVLTAFTNVQDLLGGLQ-FHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEI- 302

Query: 390 IKSTP--ILWRTLLSSCSSHNNL 410
             S P  +LW T++S  S + +L
Sbjct: 303 --SNPDLVLWNTMISGYSLYEDL 323



 Score = 45.1 bits (105), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 93/212 (43%), Gaps = 6/212 (2%)

Query: 232 LSSCALLGSLDLGKWIHE-YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290
           L +C     L  GK +H  YIK + +     ++   + +++KC RL  A  VFD+    +
Sbjct: 15  LKTCIAHRDLRTGKSLHALYIKSF-VPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCN 73

Query: 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350
             +++ +I AYA       +  +F+EM +    PD +++  L+ A +  G     +  F 
Sbjct: 74  VFSFNTLISAYAKESYVEVAHQLFDEMPQ----PDSVSYNTLIAAYARRGDTQPAFQLFL 129

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
            MR+ +  + G    G +       G + + +       + S   +   L++S S +  L
Sbjct: 130 EMREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFL 189

Query: 411 GLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
             A+++   + E  D    + ++++ +  R G
Sbjct: 190 KEARRIFHWLSEDRDEVSWNSMVVAYMQHREG 221


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 201/545 (36%), Positives = 306/545 (56%), Gaps = 18/545 (3%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKT-HLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           S LP C+    L   +++HA  IK   L  +  V + L++      T   +  A  +FD 
Sbjct: 124 SALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDM---YATHEQVGKARQVFDM 180

Query: 82  IPEP--DIVLFNTMARGYSRSKTPIRAIFLFVEL-LNSGLLPDDYSFPSLLKACACVGAE 138
           +P+    + ++N M  GY+++     A+ LF  +   +G +P + +  S+L ACA   +E
Sbjct: 181 VPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACA--RSE 238

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
           A    + +H + +K G+  N +V   L+++YA     + ARRIF  +  P VVS+N +IT
Sbjct: 239 AFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLIT 298

Query: 199 AYARSSRPNEALSLFRELQ---ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
                    +A  L RE+Q   E  + P  +T+++ L  CA+L +   GK IH Y  ++ 
Sbjct: 299 GCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHA 358

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
           LD  V V +AL+DM+AKCG L  + +VFD +  ++T  W+ +I+AY  HG G ++ ++F+
Sbjct: 359 LDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFD 418

Query: 316 EMMKA-QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
            M  + +  P+E+TF+  L ACSH+G+VD G   F++M   +G+ P      C+VD+LGR
Sbjct: 419 RMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGR 478

Query: 375 AGRLDEAYRFIDELPIKSTPI-LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI 433
           AGRLDEAY  +  +      +  W T+L +C  H N+ L +   ER+ EL+      YV+
Sbjct: 479 AGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVL 538

Query: 434 LSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKA 493
           L N+ + AG+W     +R  M+ RGV K PGCS IEV+  +  F +G+  H  S ++   
Sbjct: 539 LCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAH 598

Query: 494 LDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVK 553
           ++ L  E+   GY PDTS V H DM+D +K   LR HSEKLAI FGLL   PG TIRV K
Sbjct: 599 MEALWGEMVARGYTPDTSCVLH-DMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAK 657

Query: 554 NLRVC 558
           NLRVC
Sbjct: 658 NLRVC 662



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 186/389 (47%), Gaps = 16/389 (4%)

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
           D+V +NTM     +S     A+    +++  G+ PD  +F S L AC+ +  E L+ G++
Sbjct: 83  DVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRL--ELLDVGRE 140

Query: 146 LHCFAIKLG-LNSNLYVCTTLINLYAECSDVEAARRIFENI--SEPCVVSYNAIITAYAR 202
           +H + IK   L +N +V + L+++YA    V  AR++F+ +  S   +  +NA+I  YA+
Sbjct: 141 MHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQ 200

Query: 203 SSRPNEALSLFRELQ-ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           +    EAL LF  ++ E    P + TM S L +CA   +    + +H Y+ K G+     
Sbjct: 201 AGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRF 260

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V  AL+DM+A+ G+ D A  +F  +   D  +W+ +I      G    +  +  EM + +
Sbjct: 261 VQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLE 320

Query: 322 ---VSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
              V P+ IT + LL  C+       G   + Y++R  + +   +     +VD+  + G 
Sbjct: 321 EGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVR--HALDTDVAVGSALVDMYAKCGC 378

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437
           L  +    D LP ++T I W  L+ +   H   G A  + +R+    ++   +   ++ L
Sbjct: 379 LALSRAVFDRLPRRNT-ITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAAL 437

Query: 438 --CARAGRWE-DVDYLRKLMKDRGVLKVP 463
             C+ +G  +  +     + +D GV   P
Sbjct: 438 AACSHSGMVDRGLQLFHAMERDHGVEPTP 466



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 156/324 (48%), Gaps = 12/324 (3%)

Query: 113 LLNSGLLPDDYSFPSLLKACACV--GAEALEEGKQLHCFAIKLGL--NSNLYVCTTLINL 168
           +L  G     ++  S+L+A + +   A A+  G++ H FA+K GL      +    L+++
Sbjct: 1   MLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSM 60

Query: 169 YAECSDVEAARRIFENIS--EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV 226
           YA    V  A+R+F   +     VV++N +++   +S   +EA+    ++    ++P  V
Sbjct: 61  YARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGV 120

Query: 227 TMLSALSSCALLGSLDLGKWIHEY-IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285
           T  SAL +C+ L  LD+G+ +H Y IK   L     V +AL+DM+A   ++  A  VFD 
Sbjct: 121 TFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDM 180

Query: 286 M--SGKDTQAWSAMIVAYATHGQGHKSILMFEEM-MKAQVSPDEITFLGLLYACSHTGLV 342
           +  SGK    W+AMI  YA  G   +++ +F  M  +A   P E T   +L AC+ +   
Sbjct: 181 VPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAF 240

Query: 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
             G    +    K G+         ++D+  R G+ D A R    + +    + W TL++
Sbjct: 241 -AGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDV-VSWNTLIT 298

Query: 403 SCSSHNNLGLAKQVIERIFELDDS 426
            C    ++  A Q+   + +L++ 
Sbjct: 299 GCVVQGHVADAFQLAREMQQLEEG 322


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 170/401 (42%), Positives = 262/401 (65%), Gaps = 1/401 (0%)

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           +L    T+I+ YA   +V  AR IF+   +    S++++I+AYA+S R  EAL L+RE+ 
Sbjct: 53  DLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMH 112

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
             ++ P  +T++S +S+C+ LG+L +G  +H +++   ++  +K+ TALIDM+AKCG ++
Sbjct: 113 AASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIE 172

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            A  VFD M  KD Q WS+MI+  A HG GH+S+ +F +M+   + P+ +TF+G+L AC+
Sbjct: 173 SAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACT 232

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H GLV EG  YF SM + +GI P ++HYGCMVDLLGR+G ++EA + I  +  +   I+W
Sbjct: 233 HVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIW 292

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
           R LL +C  H N+ +A++ + ++  LD    G YV+LSN+ A+A  WE V  +RK ++  
Sbjct: 293 RALLGACRIHKNVEIAEEAMAKLRVLDPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRD 352

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
            + ++PG SSIE +  + EF SGD +H  S ++ + L+E++  LK  GY P T LV   D
Sbjct: 353 NIQRIPGRSSIEWDEKIHEFVSGDRLHPRSKEIYRVLEEMMDRLKQAGYKPMTGLVLQ-D 411

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           ++++ KE +L  HSEKLAI F LL TP  +TIR+ KNLR C
Sbjct: 412 IDEQSKERSLAEHSEKLAIAFALLTTPARSTIRITKNLRAC 452



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 137/246 (55%), Gaps = 8/246 (3%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +FD   + D   +++M   Y++S+    A+ L+ E+  + ++PD  +  S++ AC+ 
Sbjct: 73  AREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSD 132

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           +GA A+  G ++H F     +  +L + T LI++YA+C D+E+A+R+F+ + E  V +++
Sbjct: 133 LGALAV--GAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWS 190

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEYIKK 253
           ++I   A     +E+LSLF ++    +KP  VT +  L +C  +G +  G K+     + 
Sbjct: 191 SMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEV 250

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHGQGHKSIL 312
           +G++  V+    ++D+  + G +++A  +  +M+ + DT  W A++ A       HK++ 
Sbjct: 251 HGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRI----HKNVE 306

Query: 313 MFEEMM 318
           + EE M
Sbjct: 307 IAEEAM 312



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 87/180 (48%), Gaps = 10/180 (5%)

Query: 25  LSLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           +S++  C+    L    ++H       ++ DL + T LI+   +      +E A  +FDR
Sbjct: 124 VSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAK---CGDIESAQRVFDR 180

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +PE D+  +++M  G +       ++ LF ++++ G+ P+  +F  +L AC  VG   + 
Sbjct: 181 MPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVG--LVS 238

Query: 142 EGKQ-LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS-EPCVVSYNAIITA 199
           EGK+         G+   +     +++L      VE AR++  +++ EP  + + A++ A
Sbjct: 239 EGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGA 298


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 192/521 (36%), Positives = 305/521 (58%), Gaps = 6/521 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K IH   +KT    + +V   L++   +      +E A  +F+ IP  D++L++ +   Y
Sbjct: 271 KGIHGCAVKTLCDTEPHVGGALLDMYAK---CGYIEDARTVFEIIPHDDVILWSFLISRY 327

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           ++S    +A  +F+ ++ S ++P+++S   +L+ACA V    L+ G+Q+H   IKLG  S
Sbjct: 328 AQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAF--LDLGQQIHNLVIKLGYES 385

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            L+V   L+++YA+C ++E +  IF ++ +   VS+N II  Y +S    +ALS+F+E++
Sbjct: 386 ELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMR 445

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
             ++  T VT  S L +CA   S+     IH  I+K   +    V  +LID +AKCG + 
Sbjct: 446 AAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIR 505

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           DA+ VF+++   D  +W+A+I  YA HG+   ++ +F  M K+   P+++TF+ LL  C 
Sbjct: 506 DALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCG 565

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
            TGLV++G + F SM   + I P + HY C+V LLGRAGRL++A +FI ++P   +P++W
Sbjct: 566 STGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVW 625

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
           R LLSSC  H N+ L K   E++ E++      YV+LSN+ A AG  + V  LRK M++ 
Sbjct: 626 RALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLLSNMYAAAGILDQVALLRKSMRNI 685

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           GV K  G S +E+   V  F  G   H     +   L+ L  +    GYVPD ++V H D
Sbjct: 686 GVKKEVGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWLNLKASREGYVPDINVVLH-D 744

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +++EEK   L  HSE+LA+ +GL  TPPG  IR++KNLR C
Sbjct: 745 VDEEEKARMLWVHSERLALAYGLSMTPPGHPIRIMKNLRSC 785



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 201/404 (49%), Gaps = 8/404 (1%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           IHA   K     +  V + LI+         ++ HA  +FD I   D V +  M   YS 
Sbjct: 172 IHACACKLGHDRNAFVGSSLID---AYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSE 228

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
           +  P  A+  F ++  +G  P+ +   S+LKA  C+ +  L  GK +H  A+K   ++  
Sbjct: 229 NDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVL--GKGIHGCAVKTLCDTEP 286

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
           +V   L+++YA+C  +E AR +FE I    V+ ++ +I+ YA+S +  +A  +F  +   
Sbjct: 287 HVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRS 346

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
           ++ P + ++   L +CA +  LDLG+ IH  + K G +  + V  AL+D++AKC  ++++
Sbjct: 347 SVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENS 406

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
           + +F ++   +  +W+ +IV Y   G    ++ +F+EM  A V   ++TF  +L AC++T
Sbjct: 407 LEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANT 466

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRT 399
             +       +S+ +K            ++D   + G + +A +  + + I+   + W  
Sbjct: 467 ASIKHTVQ-IHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESI-IQCDVVSWNA 524

Query: 400 LLSSCSSHNNLGLAKQVIERIFELDDS-HGGDYVILSNLCARAG 442
           ++S  + H     A ++  R+ + D   +   +V L ++C   G
Sbjct: 525 IISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTG 568



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 191/407 (46%), Gaps = 17/407 (4%)

Query: 27  LLPRCTS---FRGLKQIHAVTIKTH--LQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           LL RC +    R  + +HA  ++     Q D      L+N   +      +  A  LFD 
Sbjct: 53  LLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAK---LGPLAAARRLFDG 109

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +PE ++V F T+ +GY+       A  LF  L   G   + +   ++LK    + A  L 
Sbjct: 110 MPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPGLT 169

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
               +H  A KLG + N +V ++LI+ Y+ C  V  AR +F+ I     V++ A+++ Y+
Sbjct: 170 --CCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYS 227

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
            +  P +AL+ F +++    KP    + S L +   L S  LGK IH    K   D    
Sbjct: 228 ENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPH 287

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V  AL+DM+AKCG ++DA +VF+ +   D   WS +I  YA   Q  ++  MF  MM++ 
Sbjct: 288 VGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSS 347

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           V P+E +  G+L AC++   +D G    +++  K G    +     ++D+  +   ++ +
Sbjct: 348 VVPNEFSLSGVLQACANVAFLDLG-QQIHNLVIKLGYESELFVGNALMDVYAKCRNMENS 406

Query: 382 YRFIDELPIKSTPILWRTLLSS-CSSHNNLGLAKQVIERIFELDDSH 427
                 L   +  + W T++   C S    G A+  +    E+  +H
Sbjct: 407 LEIFRSLR-DANEVSWNTIIVGYCQS----GFAEDALSVFQEMRAAH 448



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 145/319 (45%), Gaps = 19/319 (5%)

Query: 97  YSRSKTPIR-------AIFLFVELLNSGLLP--DDYSFPSLLKACACVGAEALEEGKQLH 147
           +S+   P+R       A+    + L S  LP  D Y+   LL+ C   G      G+ +H
Sbjct: 13  FSQPNVPLRRNLAANAALQWLDDELASLALPKLDSYACARLLQRCIARGDA--RAGRAVH 70

Query: 148 CFAIKLGLNSNL--YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSR 205
              ++ G  + L  +    L+NLYA+   + AARR+F+ + E  +VS+  ++  YA    
Sbjct: 71  ARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALRGG 130

Query: 206 PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTA 265
             EA  LFR LQ    +     + + L     + +  L   IH    K G D+   V ++
Sbjct: 131 FEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSS 190

Query: 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
           LID ++ CG +  A  VFD +  KD   W+AM+  Y+ +     ++  F +M  A   P+
Sbjct: 191 LIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPN 250

Query: 326 EITFLGLLYA--CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
                 +L A  C  + ++ +G  +  +++      P +   G ++D+  + G +++A  
Sbjct: 251 PFVLTSVLKAAVCLSSAVLGKGI-HGCAVKTLCDTEPHVG--GALLDMYAKCGYIEDART 307

Query: 384 FIDELPIKSTPILWRTLLS 402
             + +P     ILW  L+S
Sbjct: 308 VFEIIP-HDDVILWSFLIS 325


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 198/541 (36%), Positives = 309/541 (57%), Gaps = 18/541 (3%)

Query: 25  LSLLPRCT----SFRGLKQIHAVTIKTHLQNDL---NVLTKLINFCTQNPTTSSMEHAHL 77
           LS++P C     SF G   +H  +++T L ++    N L  + + C+   +T+       
Sbjct: 89  LSVMPACVQSHYSFIG-GVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNK------ 141

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           +F  + + ++V +  M   Y+R+    +   LF E+   G+ PD ++  S L A A  G 
Sbjct: 142 IFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFA--GN 199

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
           E+L+ GK +H +AI+ G+   L V   L+ +Y +C  +E AR IF+++++   +S+N +I
Sbjct: 200 ESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLI 259

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
             Y+RS+  NEA +LF E+  + L+P  VTM   L + A L SL+ G+ +H Y  + G  
Sbjct: 260 GGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYL 318

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
           +   V  AL+DM+ KCG L  A  +FD ++ K+  +W+ MI  Y  HG+G  +I +FE+M
Sbjct: 319 EDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQM 378

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
             + + PD  +F  +LYACSH+GL DEGW +F +MR+++ I P +KHY CMVDLL   G 
Sbjct: 379 KGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGN 438

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437
           L EAY FI+ +PI+    +W +LL  C  H N+ LA++V E +FEL+  + G YV+L+N+
Sbjct: 439 LKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELEPENTGYYVLLANI 498

Query: 438 CARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDEL 497
            A A RWE V  L+  +  RG+ +  GCS IEV      FF+ +  H     + + LD++
Sbjct: 499 YAEAERWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAHIFFAENRNHPQGMRIAEFLDDV 558

Query: 498 VKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRV 557
            + ++  G+ P       G  +D   + AL  HS KLA+ FG+LN   G  IRV KN RV
Sbjct: 559 ARRMQEEGHDPKKKYALMG-ADDAVHDEALCGHSSKLAVAFGVLNLSQGRPIRVTKNSRV 617

Query: 558 C 558
           C
Sbjct: 618 C 618



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 195/369 (52%), Gaps = 10/369 (2%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           +H   +K        V   LI+F  +   ++ +E A ++FD +P+ DI+ +N++  G + 
Sbjct: 6   VHGYLVKYGFGAQCAVCNALISFYAK---SNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
           +    +A+ LFV +   G   D  +  S++   ACV +     G  +H ++++ GL S  
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMP--ACVQSHYSFIGGVVHGYSVRTGLISET 120

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
            +   L+++Y+ CSD  +  +IF N+ +  VVS+ A+IT+Y R+   ++   LF+E+   
Sbjct: 121 SLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLE 180

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
            ++P    + SAL + A   SL  GK +H Y  + G+++ + V  AL++M+ KCG +++A
Sbjct: 181 GIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEA 240

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
             +FD+++ KDT +W+ +I  Y+     +++  +F EM+  Q+ P+ +T   +L A +  
Sbjct: 241 RFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEML-LQLRPNAVTMACILPAAASL 299

Query: 340 GLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
             ++ G   + Y++R  Y     + +   +VD+  + G L  A R  D L  K+  I W 
Sbjct: 300 SSLERGREMHAYAVRRGYLEDNFVAN--ALVDMYVKCGALLLARRLFDMLTNKNL-ISWT 356

Query: 399 TLLSSCSSH 407
            +++    H
Sbjct: 357 IMIAGYGMH 365



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 129/268 (48%), Gaps = 4/268 (1%)

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           +G  +H + +K G  +   VC  LI+ YA+ + +E A  +F+ + +  ++S+N+II   A
Sbjct: 2   DGLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCA 61

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
            +   ++A+ LF  +     +    T+LS + +C       +G  +H Y  + GL     
Sbjct: 62  SNGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETS 121

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           +  AL+DM++ C        +F NM  K+  +W+AMI +Y   G   K   +F+EM    
Sbjct: 122 LGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEG 181

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
           + PD       L A +    +  G + + Y++R+  GI   +     ++++  + G ++E
Sbjct: 182 IRPDVFAITSALDAFAGNESLKHGKSVHGYAIRN--GIEEVLPVANALMEMYVKCGYMEE 239

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHN 408
           A RFI +   K   I W TL+   S  N
Sbjct: 240 A-RFIFDHVTKKDTISWNTLIGGYSRSN 266


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 188/484 (38%), Positives = 284/484 (58%), Gaps = 16/484 (3%)

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +P P  V +  +   Y  +   + AI +      SG+ PD ++   +L ACA V    LE
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVAD--LE 58

Query: 142 EGKQLHCFAIKL-GLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY 200
            G+ +   A +  G+  +++V T  ++LY +C ++E AR +F+ +     V++ A++  Y
Sbjct: 59  TGEAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGY 118

Query: 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
           A +  P EAL LF  +Q    KP   T++ ALS+C  LG+LDLG+      +  G+  + 
Sbjct: 119 ASNGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGR------QAVGMVHWD 172

Query: 261 KV------NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
           +V       TALIDM+AKCG   +A  VF  M  +D   W+AMI+     G    +  + 
Sbjct: 173 EVLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALV 232

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
            +M K+ V  ++ TF+GLL +C+HTGLV++G  YF++M   Y I P I+HYGCMVDL  R
Sbjct: 233 GQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSR 292

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
           AG L+EA++ I ++P+ +  ++W  LL  C  H N  LA+  ++++  L+  + G+YV+L
Sbjct: 293 AGLLEEAHQLIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGNYVML 352

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
           SN+ + +GRWED   LR  MK +G+ KVP  S +E++  V +F+ GD  H  S  +   L
Sbjct: 353 SNIYSNSGRWEDAAKLRLEMKAKGIEKVPASSWVELDGKVHKFYVGDDSHPLSDKIYAKL 412

Query: 495 DELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
           DEL  E+K +GY P T +V   D+E+EEKE  L +HSEK+AI F L+ T PG TIRV KN
Sbjct: 413 DELGMEMKAMGYEPTTEVVMF-DVENEEKENTLVHHSEKIAIAFSLITTEPGETIRVTKN 471

Query: 555 LRVC 558
           LRVC
Sbjct: 472 LRVC 475



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 109/235 (46%), Gaps = 4/235 (1%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           ME A  +FD +   D V +  M  GY+ +  P  A+ LF  +   G  PD Y+    L A
Sbjct: 93  MEKARSVFDEMKNRDAVAWGAMVGGYASNGHPREALDLFFAMQMEGAKPDCYTVVGALSA 152

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C  +G  AL+ G+Q         +  N  + T LI++YA+C     A  +F+ + E  ++
Sbjct: 153 CTRLG--ALDLGRQAVGMVHWDEVLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDII 210

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK-WIHEY 250
            +NA+I     +     A +L  ++++  +K  D T +  L SC   G ++ G+ + H  
Sbjct: 211 VWNAMILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNM 270

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG-KDTQAWSAMIVAYATH 304
              Y +   ++    ++D+ ++ G L++A  +  +M    +   W A++     H
Sbjct: 271 THVYRISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIH 325


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 162/396 (40%), Positives = 261/396 (65%), Gaps = 1/396 (0%)

Query: 163 TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK 222
            T+I+ YA   +V+ AR +F  + +    S++++++AY +  R  +AL L+RE++   + 
Sbjct: 141 NTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVN 200

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
           P   TM+S LS+C+ +G+L +G  +H++++  G++  VK+ TALIDM+AKCG ++++V V
Sbjct: 201 PDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRV 260

Query: 283 FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342
           F +M  KD   WS+MI+  A HG GH ++ +F  M+   + P+E+TF+G+L +C+H GLV
Sbjct: 261 FHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLV 320

Query: 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
            +G  YF SM   +G+ P ++HYGCMVDLLGR+G ++EA + I ++P +   ++WR LL 
Sbjct: 321 SDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLG 380

Query: 403 SCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKV 462
           +C  + N+ +A++ + ++  LD    G YV+LSN+ A+A  WE V  +R+ ++   + ++
Sbjct: 381 ACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRI 440

Query: 463 PGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEE 522
           PG SSIE  N + EF SGD  H  S ++ K L E++  L+  GY P T LV   D++++ 
Sbjct: 441 PGRSSIEWQNTIHEFISGDRSHPRSKEIYKMLGEMMDRLRQAGYKPMTGLVLQ-DIDEQS 499

Query: 523 KEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           KE AL  HSEKLA+ FGLL TP G+T+R+ KNLR C
Sbjct: 500 KERALAEHSEKLAVAFGLLTTPAGSTLRITKNLRAC 535



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 131/246 (53%), Gaps = 8/246 (3%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +F+ + + D   +++M   Y++ +    A+ L+ E+  + + PD  +  S+L AC+ 
Sbjct: 156 AREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSD 215

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           +GA A+  G ++H F    G+  ++ + T LI++YA+C D+E + R+F ++    V++++
Sbjct: 216 MGALAV--GAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWS 273

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEYIKK 253
           ++I   A     ++ALSLF  +    L+P +VT +  L SC  LG +  G K+       
Sbjct: 274 SMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVV 333

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHGQGHKSIL 312
           +G+   V+    ++D+  + G +++A  +  +M  + D   W A++ A       +K++ 
Sbjct: 334 HGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRI----YKNVE 389

Query: 313 MFEEMM 318
           + EE M
Sbjct: 390 VAEEAM 395


>gi|297743485|emb|CBI36352.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 208/603 (34%), Positives = 323/603 (53%), Gaps = 87/603 (14%)

Query: 2   ATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLIN 61
           ATT SPP T  P       TP  LSL+  C S   LKQIH+ TI T L ++  V  ++I 
Sbjct: 4   ATTLSPPPTHLPS---LPQTP-PLSLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIA 59

Query: 62  FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPD 121
           FC ++     ME+A ++FD +P P+  ++N M +GYSR   P  A+ ++ E+L  G++PD
Sbjct: 60  FCCKH-ELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPD 118

Query: 122 DYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRI 181
           +Y++P LLK        A++ G++LH   +KLG +SN++V   LI+LY+   +V  AR +
Sbjct: 119 EYTYPFLLKRFT--RDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGV 176

Query: 182 FENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSL 241
           F+  S+  VV++N +I+ Y RS + +E++ LF E++   + P+ +T++S LS+C+ L  L
Sbjct: 177 FDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDL 236

Query: 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
           ++GK +H                                + FD M  +D  +W+AMI  Y
Sbjct: 237 NVGKRVHR-------------------------------NYFDKMPERDFVSWTAMIDGY 265

Query: 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVP 360
               +  + + +F EM  A + PDE T + +L AC+H G ++ G W   Y  +++  I  
Sbjct: 266 LQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDS 325

Query: 361 GIKHYGCMVDLLGRAGRLDEAYRF------------------------------------ 384
            + +   ++D+    G +++A R                                     
Sbjct: 326 FVGN--ALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQML 383

Query: 385 ---------IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
                    I  +P+K   I+W +LL +C  H +  +A+   ++I EL+  +G  YV+L 
Sbjct: 384 KASITPDEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLC 443

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           N+ A   RWE +  +RKLM DRG+ K PGCS IE+N  V EF +GD VH  S ++   LD
Sbjct: 444 NIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKEIYSKLD 503

Query: 496 ELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNL 555
           E+  +LK  GY PDTS V   D+ +EEKE A+  HSEKLAI FGL+++ PG TIR+VKNL
Sbjct: 504 EMSVDLKFAGYSPDTSEVFL-DIGEEEKESAVYRHSEKLAIAFGLISSGPGVTIRIVKNL 562

Query: 556 RVC 558
           R+C
Sbjct: 563 RMC 565


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 192/543 (35%), Positives = 316/543 (58%), Gaps = 11/543 (2%)

Query: 21  TPNALSLLPRCTSFRGLKQI----HAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           +P  ++ L +     GLK++    H+  +   + ND+ VLT L++  +    T S   A 
Sbjct: 245 SPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGS---AA 301

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
           L+FD +    ++ +N M  GY ++     +  LF  L+ SG   D  +  SL++ C+   
Sbjct: 302 LVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCS--Q 359

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
              LE G+ LH   I+  L S+L + T ++++Y++C  ++ A  +F  + +  V+++ A+
Sbjct: 360 TSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAM 419

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           +   +++    +AL LF ++QE  +    VT++S +  CA LGSL  G+ +H +  ++G 
Sbjct: 420 LVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGY 479

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDN-MSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
                + +ALIDM+AKCG++  A  +F+N    KD    ++MI+ Y  HG G  ++ ++ 
Sbjct: 480 AFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYS 539

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
            M++ ++ P++ TF+ LL ACSH+GLV+EG   F+SM   + + P  KHY C+VDL  RA
Sbjct: 540 RMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRA 599

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
           GRL+EA   + ++P + +  +   LLS C +H N  +  Q+ +R+  LD  + G YV+LS
Sbjct: 600 GRLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIADRLISLDYLNSGIYVMLS 659

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           N+ A A +WE V+Y+R LM+ +G+ K+PG S IEV N V  FF+ D  H    D+ + L+
Sbjct: 660 NIYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVYTFFASDDSHPSWADIYQLLE 719

Query: 496 ELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNL 555
            L  E++  GY+PDTS V   D+ +  K   L  HSE+LAI FGLL+TP G+ I++ KNL
Sbjct: 720 NLRLEVEAEGYIPDTSCVLR-DVNEPMKVKLLWGHSERLAIAFGLLSTPCGSLIKITKNL 778

Query: 556 RVC 558
           RVC
Sbjct: 779 RVC 781



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 176/369 (47%), Gaps = 7/369 (1%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           +K IHA  IK  +  +  +  KLI   +       + HA  +FD+   P+  + N M  G
Sbjct: 63  VKSIHAQIIKNWVSTESFLAAKLIRVYSD---LGFLGHARNVFDQCSLPETAVCNAMIAG 119

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           + R++  +    LF  + +  +  + Y+    LKAC  +  +  E G ++   A++ G +
Sbjct: 120 FLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDD--EVGMEIIRAAVRRGFH 177

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            +LYV ++++N   +   +  A+++F+ + E  VV +N+II  Y +     E++ +F E+
Sbjct: 178 LHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEM 237

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
               L+P+ VTM + L +C   G   +G   H Y+   G+   V V T+L+DM++  G  
Sbjct: 238 IGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDT 297

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
             A  VFD+M  +   +W+AMI  Y  +G   +S  +F  ++++    D  T + L+  C
Sbjct: 298 GSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGC 357

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           S T  ++ G    +S   +  +   +     +VD+  + G + +A      +  K   I 
Sbjct: 358 SQTSDLENG-RILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMG-KKNVIT 415

Query: 397 WRTLLSSCS 405
           W  +L   S
Sbjct: 416 WTAMLVGLS 424



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 105/220 (47%)

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
           PS+  +     +  L   K +H   IK  +++  ++   LI +Y++   +  AR +F+  
Sbjct: 46  PSVFSSLLHQFSNTLIHVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQC 105

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245
           S P     NA+I  + R+ +  E   LFR +   +++    T + AL +C  L   ++G 
Sbjct: 106 SLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGM 165

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
            I     + G   ++ V +++++   K G L DA  VFD M  KD   W+++I  Y   G
Sbjct: 166 EIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKG 225

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
              +SI MF EM+   + P  +T   LL AC  +GL   G
Sbjct: 226 LFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVG 265


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 183/492 (37%), Positives = 282/492 (57%), Gaps = 56/492 (11%)

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179
           PD  S  ++L ACA +GA     GK +H  A++ G   +L+V   L+++YA+C  V+ A 
Sbjct: 11  PDVVSLVNVLPACASMGAWL--HGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEAS 68

Query: 180 RIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNL------------------ 221
           ++F+ I E  VVS+NA++  Y++  R  +AL LF +++E N+                  
Sbjct: 69  KVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRG 128

Query: 222 ----------------------------------KPTDVTMLSALSSCALLGSLDLGKWI 247
                                             KP   T+  AL +CA L +L LG+ I
Sbjct: 129 LGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQI 188

Query: 248 HEYIKKYGLDK-YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ 306
           H YI +   D  ++ V   LIDM+AK G +D A  VFDN+  K+  +W++++  Y  HG+
Sbjct: 189 HAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGR 248

Query: 307 GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG 366
           G +++ +F+EM +  + PD +T L +LYACSH+G++D+G  +F SM  ++G++PG +HY 
Sbjct: 249 GKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYA 308

Query: 367 CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
           CMVDLLGRAGRL+EA   I+ + ++ + I+W  LLS C  H N+ L +   +++ EL+  
Sbjct: 309 CMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSE 368

Query: 427 HGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSY 486
           + G Y +LSN+ A A RW+DV  +R LMK+ G+ K PGCS ++       F+  D  H  
Sbjct: 369 NDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKTHPQ 428

Query: 487 STDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPG 546
           S  + + L  L + +K++GYVP+TS   H D++DEEK   L  HSEKLA+ +G+L + PG
Sbjct: 429 SKQIYEILRSLTQRIKVLGYVPETSFALH-DVDDEEKVDLLFEHSEKLALAYGILISAPG 487

Query: 547 TTIRVVKNLRVC 558
             IR+ KNLRVC
Sbjct: 488 APIRITKNLRVC 499



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 154/342 (45%), Gaps = 62/342 (18%)

Query: 22  PNALSL---LPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           P+ +SL   LP C S       K +H + +++    DL V   L++   +      ++ A
Sbjct: 11  PDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAK---CGMVDEA 67

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA---- 131
             +FDRI E D+V +N M  GYS+      A+ LF ++    +  +  S+ +++ A    
Sbjct: 68  SKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQR 127

Query: 132 ----------------------------------------------CACVGAEALEEGKQ 145
                                                          AC    AL  G+Q
Sbjct: 128 GLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQ 187

Query: 146 LHCFAIKLGLNSN-LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           +H + ++   +S  LYV   LI++YA+  D++ AR +F+N+ +   VS+ +++T Y    
Sbjct: 188 IHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHG 247

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEYIKKYGLDKYVKVN 263
           R  EAL +F E++   L+P  VT+L  L +C+  G +D G ++ +   K++G+    +  
Sbjct: 248 RGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHY 307

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQ-AWSAMIVAYATH 304
             ++D+  + GRL++A+ + + M  + +   W A++     H
Sbjct: 308 ACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIH 349



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 82/139 (58%)

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
           +L + +++P  V++++ L +CA +G+   GK +H    + G  + + V  AL+DM+AKCG
Sbjct: 3   KLGDIDMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCG 62

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
            +D+A  VFD +  KD  +W+AM+  Y+  G+   ++ +FE+M +  +  + +++  ++ 
Sbjct: 63  MVDEASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIA 122

Query: 335 ACSHTGLVDEGWNYFYSMR 353
           A +  GL  E  + F  M+
Sbjct: 123 AFAQRGLGCETLDVFREMQ 141



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 93/234 (39%), Gaps = 49/234 (20%)

Query: 18  CTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQND-LNVLTKLINFCTQNPTTSSMEHAH 76
           C     AL    R  + R  +QIHA  ++ H  +  L V   LI+   +   +  ++ A 
Sbjct: 166 CFTISCALIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAK---SGDIDVAR 222

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +FD + + + V + ++  GY        A+ +F E+   GL PD  +   +L AC+   
Sbjct: 223 FVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACS--- 279

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE-----PCVV 191
                     H   I  G+                          F ++S+     P   
Sbjct: 280 ----------HSGMIDQGI------------------------EFFNSMSKEFGVIPGQE 305

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245
            Y  ++    R+ R NEA+ L   +Q   ++P+ +  ++ LS C +  +++LG+
Sbjct: 306 HYACMVDLLGRAGRLNEAMELIEGMQ---MEPSSIVWVALLSGCRIHANVELGE 356


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 194/537 (36%), Positives = 307/537 (57%), Gaps = 39/537 (7%)

Query: 54  NVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVEL 113
           N+L ++   C + P      +A  LF+ +P  ++  +      +S +     A+  F  +
Sbjct: 101 NLLIEMYGKCGRLP------YARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRM 154

Query: 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
             SG  PD  +F  +L A A +GA A+++G+++H +A   GL  N+ V T +I++Y +C 
Sbjct: 155 YQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTAVISMYGKCG 214

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE--------------- 218
            ++ AR  FE +     V++NA++T Y    R  EAL LFRE+ +               
Sbjct: 215 RLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQ 274

Query: 219 -----------------RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
                             +L P   T ++ +  CA L +L  G+ IH  ++    D  + 
Sbjct: 275 HGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLL 334

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V+ AL+ M+ KCG LD+A+ VF +M  KD  +W+ +I +YA HG   +++L+++EM    
Sbjct: 335 VSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQG 394

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           V P E+TF+GLL ACSH GLV +G +YFY M+D + I P + H+GC++DLLGR GRL EA
Sbjct: 395 VKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEA 454

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
              +  +PI++  + W +LL +C +H +L    +  +++ +      G YV+LSN+ A A
Sbjct: 455 ELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAA 514

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           GRW+DV+ +RK+M  RGV K PG S IE+ +VV EF SGD  H    ++   L ++V+E+
Sbjct: 515 GRWKDVEKIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDSSHPQGEEIYVELGKMVEEM 574

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K +GYVPDTS V H   E+E++++ +  HSEKLAI +G +  P  + +R+VKNLRVC
Sbjct: 575 KGLGYVPDTSSVFHDLEEEEKEDLLV-CHSEKLAIVYGNMVVPGKSMLRIVKNLRVC 630



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 177/388 (45%), Gaps = 49/388 (12%)

Query: 111 VELLNSGLLP-DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL--YVCTTLIN 167
           ++LL S  L  D   + +L++ C    A A+   ++LH   + L  +++   ++   LI 
Sbjct: 48  IQLLESRELELDPVGYAALIRRCG--AANAISAARRLHSHILSLPHSNSQPPFLANLLIE 105

Query: 168 LYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT 227
           +Y +C  +  AR +FE++    V ++   + A++ +   +EAL  FR + +   +P  VT
Sbjct: 106 MYGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPDRVT 165

Query: 228 MLSAL--SSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285
               L   +     ++D G+ IH Y +  GL   V V TA+I M+ KCGRLDDA + F+ 
Sbjct: 166 FSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEE 225

Query: 286 MS-----------------GKDTQA--------------WSAMIVAYATHGQGHKSILMF 314
           +                  G+D +A              W+AMI AYA HG+G +++ ++
Sbjct: 226 LQWKNSVTWNAMMTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQALDLY 285

Query: 315 EEMMK-AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
             M     ++P + TF+ ++  C+    + +G      +R        +     +V + G
Sbjct: 286 RSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVR-ATNFDANLLVSNALVHMYG 344

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD----DSHGG 429
           + G LDEA      + +K   I W T++SS + H   G + Q +    E+D         
Sbjct: 345 KCGCLDEALDVFHSMKLKDE-ISWNTIISSYAYH---GHSDQALLLYQEMDLQGVKPTEV 400

Query: 430 DYVILSNLCARAGRWED-VDYLRKLMKD 456
            +V L + C+  G   D +DY  ++  D
Sbjct: 401 TFVGLLSACSHGGLVADGLDYFYRMQDD 428


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 196/519 (37%), Positives = 294/519 (56%), Gaps = 40/519 (7%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           IH   +K  L  +L V   LI    +      +  A  +FD +   D+V +N+M  GY+ 
Sbjct: 141 IHGDVLKVGLDFNLFVGNGLIAMYGK---CGCLFEARRVFDEMIWKDVVSWNSMVAGYAH 197

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
           +     A+ +  E+ + G  PD  +  SL+ A A   +E +                   
Sbjct: 198 NMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENV------------------- 238

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
                   LY E        +IF N+    ++S+N +I  Y ++S P +A+ L+ ++++ 
Sbjct: 239 --------LYVE--------KIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKC 282

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
            ++P  +T  S L +C  L +L LG+ IHEY++K  L   + +  +LIDM+A+CG LDDA
Sbjct: 283 RVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDA 342

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
             VFD M  +D  +W+++I AY   GQG  ++ +F EM+ +  +PD I F+ +L ACSH+
Sbjct: 343 KRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHS 402

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRT 399
           GL+DEG  YF  M D Y I P I+HY C+VDLLGRAGR+DEAY  I ++PI+    +W T
Sbjct: 403 GLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWAT 462

Query: 400 LLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459
           LLSSC    N+ +     + + +L     G YV+LSN+ A+AGRW++V  +R +MK + +
Sbjct: 463 LLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKI 522

Query: 460 LKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDME 519
            K PG S++E+NN V  F +GD  H  S ++ + L  LV ++K +GYVP+T    H D+E
Sbjct: 523 RKTPGISNVELNNQVHTFLAGDTSHPQSKEIYEELGVLVAKMKELGYVPETDSALH-DVE 581

Query: 520 DEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +E+KE  L  HSEKLAI F LLNT     IR+ KNLRVC
Sbjct: 582 EEDKEGHLAVHSEKLAIVFALLNTQE-YQIRITKNLRVC 619



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 163/326 (50%), Gaps = 37/326 (11%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           +FD + + ++V +N M R Y  +      + +F E++N G  PD+Y++P +LKAC+C  +
Sbjct: 75  VFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSC--S 132

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
           E L  G  +H   +K+GL+ NL+V   LI +Y +C  +  ARR+F+ +    VVS+N+++
Sbjct: 133 ENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMV 192

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
             YA + R ++AL + RE+++   KP   TM S + + A   S ++      Y++K    
Sbjct: 193 AGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENV-----LYVEK---- 243

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
                                   +F N+  K+  +W+ MI  Y  +    +++ ++ +M
Sbjct: 244 ------------------------IFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQM 279

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
            K +V PD ITF  +L AC     +  G    +   +K  + P +     ++D+  R G 
Sbjct: 280 EKCRVEPDAITFASVLPACGDLSALLLG-RRIHEYVEKKKLCPNLLLENSLIDMYARCGC 338

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSS 403
           LD+A R  D +  +     W +L+S+
Sbjct: 339 LDDAKRVFDRMKFRDVAS-WTSLISA 363



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 100/196 (51%)

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
           K+LH     L  + N  +   L+  YA C +    R++F+ +S+  VV YN +I +Y  +
Sbjct: 38  KKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNN 97

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
            R ++ L +FRE+     +P + T    L +C+   +L  G  IH  + K GLD  + V 
Sbjct: 98  HRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVG 157

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
             LI M+ KCG L +A  VFD M  KD  +W++M+  YA + +   ++ +  EM      
Sbjct: 158 NGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQK 217

Query: 324 PDEITFLGLLYACSHT 339
           PD  T   L+ A ++T
Sbjct: 218 PDGCTMASLMPAVANT 233



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 125/296 (42%), Gaps = 51/296 (17%)

Query: 3   TTPSPPITQSPPPKLCTNTPNAL---SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVL 56
           + P+  +      + C   P+A+   S+LP C     L   ++IH    K  L  +L + 
Sbjct: 267 SLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLE 326

Query: 57  TKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS 116
             LI+   +      ++ A  +FDR+   D+  + ++   Y  +     A+ LF E+LNS
Sbjct: 327 NSLIDMYAR---CGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNS 383

Query: 117 GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVE 176
           G  PD  +F ++L AC+  G   L+EG+      I     ++ Y  T             
Sbjct: 384 GQAPDSIAFVAILSACSHSG--LLDEGR------IYFKQMTDDYRIT------------- 422

Query: 177 AARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236
                      P +  Y  ++    R+ R +EA ++ +++    ++P +    + LSSC 
Sbjct: 423 -----------PRIEHYACLVDLLGRAGRVDEAYNIIKQMP---IEPNERVWATLLSSCR 468

Query: 237 LLGSLDLGKWIHEYIKKYGLDK---YVKVNTALIDMHAKCGRLDDAVSVFDNMSGK 289
           +  ++D+G    + + +   ++   YV     L +++AK GR  +   +   M  K
Sbjct: 469 VFTNMDIGILAADNLLQLAPEQSGYYV----LLSNIYAKAGRWKEVTEIRSVMKRK 520


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 199/553 (35%), Positives = 305/553 (55%), Gaps = 36/553 (6%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K++HA  IK  L     +   L+N   +      ++ A  LFD +P  D V + ++    
Sbjct: 23  KKLHAQIIKAGLNQHEPIPNTLLNAYGK---CGLIQDALQLFDALPRRDPVAWASLLTAC 79

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           + S  P RA+ +   LL++G  PD + F SL+KACA +G   +++GKQ+H        + 
Sbjct: 80  NLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSD 139

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           +  V ++LI++YA+    +  R +F++IS    +S+  +I+ YARS R  EA  LFR+  
Sbjct: 140 DDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTP 199

Query: 218 ERNL-------------------------------KPTDVTMLSAL-SSCALLGSLDLGK 245
            RNL                                 TD  +LS++  +CA L   +LGK
Sbjct: 200 YRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGK 259

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
            +H  +   G +  + ++ ALIDM+AKC  L  A  +F  M  KD  +W+++IV  A HG
Sbjct: 260 QMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHG 319

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY 365
           Q  +++ +++EM+ A V P+E+TF+GL++ACSH GLV +G   F +M + +GI P ++HY
Sbjct: 320 QAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHY 379

Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
            C++DL  R+G LDEA   I  +P+      W  LLSSC  H N  +A ++ + +  L  
Sbjct: 380 TCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKP 439

Query: 426 SHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHS 485
                Y++LSN+ A AG WEDV  +RKLM      K PG S I++      F++G+  H 
Sbjct: 440 EDPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCIDLGKGSHVFYAGETSHP 499

Query: 486 YSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPP 545
              ++   + EL +E++  GY PDTS V H DM+ +EKE  L +HSE+LA+ +GLL   P
Sbjct: 500 MRDEIIGLMRELDEEMRKRGYAPDTSSVLH-DMDQQEKERQLFWHSERLAVAYGLLKAVP 558

Query: 546 GTTIRVVKNLRVC 558
           GT IR+VKNLRVC
Sbjct: 559 GTVIRIVKNLRVC 571



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 34/215 (15%)

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
           ++ S L S A    L L K +H  I K GL+++  +   L++ + KCG + DA+ +FD +
Sbjct: 6   SLQSQLCSAARQSPL-LAKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDAL 64

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL--VDE 344
             +D  AW++++ A     + H+++ +   ++     PD   F  L+ AC++ G+  V +
Sbjct: 65  PRRDPVAWASLLTACNLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQ 124

Query: 345 GWN----YFYSMRDKYGIVP----------GIKHYG----------------CMVDLLGR 374
           G      +F S      +V           G+  YG                 M+    R
Sbjct: 125 GKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYAR 184

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
           +GR  EA+R   + P ++    W  L+S      N
Sbjct: 185 SGRKFEAFRLFRQTPYRNL-FAWTALISGLVQSGN 218


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 190/490 (38%), Positives = 295/490 (60%), Gaps = 12/490 (2%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           LF+   + D+V +NTM   +S+S     A+  F  ++  G+  D  +  S+L AC+ +  
Sbjct: 170 LFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHL-- 227

Query: 138 EALEEGKQLHCFAIKLG-LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
           E L+ GK++H + ++   L  N +V + L+++Y  C  VE+ RR+F++I    +  +NA+
Sbjct: 228 ERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAM 287

Query: 197 ITAYARSSRPNEALSLFREL-QERNLKPTDVTMLSALSSCA-LLGSLDLGKWIHEYIKKY 254
           I+ YAR+    +AL LF E+ +   L P   TM S + +C   L ++  GK IH Y  + 
Sbjct: 288 ISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRN 347

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
            L   + V +AL+DM+AKCG L+ +  VF+ M  K+   W+ +I+A   HG+G +++ +F
Sbjct: 348 MLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELF 407

Query: 315 EEMMK-----AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369
           + M+       +  P+E+TF+ +  ACSH+GL+ EG N FY M+  +G+ P   HY C+V
Sbjct: 408 KNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVV 467

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPI-LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428
           DLLGRAG+L+EAY  ++ +P +   +  W +LL +C  H N+ L +   + +  L+ +  
Sbjct: 468 DLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVA 527

Query: 429 GDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYST 488
             YV+LSN+ + AG W     +RK M+  GV K PGCS IE  + V +F +GD  H  S 
Sbjct: 528 SHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSE 587

Query: 489 DLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTT 548
            L   L+ L ++++  GYVPDTS V H +++++EKE  L  HSEKLAI FG+LNTPPGTT
Sbjct: 588 QLHGFLETLSEKMRKEGYVPDTSCVLH-NVDEDEKENLLCGHSEKLAIAFGILNTPPGTT 646

Query: 549 IRVVKNLRVC 558
           IRV KNLRVC
Sbjct: 647 IRVAKNLRVC 656



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 201/374 (53%), Gaps = 47/374 (12%)

Query: 95  RGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
           R  +RS     AI  ++E+  SG  PD+++FP++LKA +  G + L+ G+Q+H  A+K G
Sbjct: 65  RSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVS--GLQDLKTGEQIHAAAVKFG 122

Query: 155 L-NSNLYVCTTLINLYAECSD--------------------VEAARRIFENISEPCVVSY 193
             +S++ V  TL+N+Y +C                      V+ ++ +FE+  +  +VS+
Sbjct: 123 YGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSW 182

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI-K 252
           N +I+++++S R +EAL+ FR +    ++   VT+ S L +C+ L  LD+GK IH Y+ +
Sbjct: 183 NTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLR 242

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
              L +   V +AL+DM+  C +++    VFD++ G+  + W+AMI  YA +G   K+++
Sbjct: 243 NNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALI 302

Query: 313 MFEEMMK-AQVSPDEITFLGLLYACSHT-GLVDEGWN-YFYSMRDKYGIVPGIKHYGCMV 369
           +F EM+K A + P+  T   ++ AC H+   + +G   + Y++R+   +   I     +V
Sbjct: 303 LFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNM--LASDITVGSALV 360

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429
           D+  + G L+ + R  +E+P K+  I W  L+ +C  H   G  ++ +E           
Sbjct: 361 DMYAKCGCLNLSRRVFNEMPNKNV-ITWNVLIMACGMH---GKGEEALE----------- 405

Query: 430 DYVILSNLCARAGR 443
              +  N+ A AGR
Sbjct: 406 ---LFKNMVAEAGR 416


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 203/554 (36%), Positives = 315/554 (56%), Gaps = 14/554 (2%)

Query: 16  KLCTNTPNALSLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLIN-------FCTQ 65
           +L  N    ++LLP       L Q   +HA  I+  L ++ N  +KL +           
Sbjct: 223 RLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDM 282

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL-LPDDYS 124
                S+ +A  +FD +P  + V ++ +  G+       +A  LF  +L  GL      S
Sbjct: 283 YAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS 342

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
             S L+ACA +  + L  G+QLH    K G++++L    +L+++YA+   ++ A  +F+ 
Sbjct: 343 IASALRACASL--DHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDE 400

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
           ++    VSY+A+++ Y ++ R  EA  +F+++Q  N++P   TM+S + +C+ L +L  G
Sbjct: 401 MAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHG 460

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
           +  H  +   GL     +  ALIDM+AKCGR+D +  VF+ M  +D  +W+ MI  Y  H
Sbjct: 461 RCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIH 520

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364
           G G ++  +F EM      PD +TF+ LL ACSH+GLV EG ++F+ MR  YG+ P ++H
Sbjct: 521 GLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEH 580

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
           Y CMVDLL R G LDEAY FI  +P+++   +W  LL +C  + N+ L K+V   I EL 
Sbjct: 581 YICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELG 640

Query: 425 DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVH 484
               G++V+LSN+ + AGR+++   +R + K +G  K PGCS IE+N  +  F  GD  H
Sbjct: 641 PEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSH 700

Query: 485 SYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTP 544
             S ++ + LD ++  +K +GY PDTS V   D+E+EEKE AL  HSEKLAI +G+L+  
Sbjct: 701 PQSPEIYRELDNILVGIKKLGYQPDTSFVLQ-DLEEEEKEKALICHSEKLAIAYGILSLS 759

Query: 545 PGTTIRVVKNLRVC 558
              TI V KNLRVC
Sbjct: 760 EDKTIFVTKNLRVC 773



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 174/344 (50%), Gaps = 24/344 (6%)

Query: 68  TTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRA---IFLFVELLNSGLLPDDYS 124
            +  +  AH LFD+IP PD+  +N + R YS S +P  A   + L+  +L   + P++Y+
Sbjct: 69  ASGHLSRAHHLFDQIPSPDVRTYNDLIRAYS-SSSPTAAADGLHLYRRMLRHRVAPNNYT 127

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
           FP  LKAC+ +       G+ +H  AI  GL ++L+V T L+++Y +C+ +  A  IF  
Sbjct: 128 FPFALKACSALADH--HCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFAT 185

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALS--LFRELQERNLKPTDVTMLSALSSCALLGSLD 242
           +    +V++NA++  YA     + A++  L  ++Q   L+P   T+++ L   A  G+L 
Sbjct: 186 MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALA 245

Query: 243 LGKWIHEYI----------KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ 292
            G  +H Y            K  L   V + TAL+DM+AKCG L  A  VFD M  ++  
Sbjct: 246 QGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV 305

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQ---VSPDEITFLGLLYACSHTGLVDEGWNYF 349
            WSA+I  +    +  ++ L+F+ M+      +SP  I     L AC+    +  G    
Sbjct: 306 TWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMG-EQL 362

Query: 350 YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
           +++  K G+   +     ++ +  +AG +D+A    DE+ +K T
Sbjct: 363 HALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDT 406



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 117/237 (49%), Gaps = 14/237 (5%)

Query: 178 ARRIFENISEPCVVSYNAIITAYARSS--RPNEALSLFRELQERNLKPTDVTMLSALSSC 235
           A  +F+ I  P V +YN +I AY+ SS     + L L+R +    + P + T   AL +C
Sbjct: 76  AHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKAC 135

Query: 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWS 295
           + L     G+ IH +    GL   + V+TAL+DM+ KC  L DA  +F  M  +D  AW+
Sbjct: 136 SALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWN 195

Query: 296 AMIVAYATHGQGHKSI--LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSM 352
           AM+  YA HG  H ++  L+  +M   ++ P+  T + LL   +  G + +G + + Y +
Sbjct: 196 AMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRI 255

Query: 353 R--------DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
           R         K  +  G+     ++D+  + G L  A R  D +P ++  + W  L+
Sbjct: 256 RACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNE-VTWSALI 311


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 199/577 (34%), Positives = 327/577 (56%), Gaps = 46/577 (7%)

Query: 21  TPNALSL---LPRCTSFRGLK---QIHAVTIKTHLQ-NDLNVLTKLINFCTQNPTTSSME 73
           TPN++++   +  C     L+   +++A    + ++ NDL +++ L++   +    ++++
Sbjct: 233 TPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDL-MVSALVDMYMK---CNAID 288

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
            A  LFD     ++ L N MA  Y R      A+ +F  +++SG+ PD  S  S + +C+
Sbjct: 289 VAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCS 348

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
            +    +  GK  H + ++ G  S   +C  LI++Y +C   + A RIF+ +S   VV++
Sbjct: 349 QL--RNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTW 406

Query: 194 NAIITAYARSSRPNEALSLFRELQERNL-------------------------------- 221
           N+I+  Y  +   + A   F  + E+N+                                
Sbjct: 407 NSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGV 466

Query: 222 KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVS 281
               VTM+S  S+C  LG+LDL KWI+ YI+K G+   V++ T L+DM ++CG  + A+S
Sbjct: 467 NADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMS 526

Query: 282 VFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341
           +F++++ +D  AW+A I A A  G   ++I +F++M++  + PD + F+G L ACSH GL
Sbjct: 527 IFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGL 586

Query: 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
           V +G   FYSM   +G+ P   HYGCMVDLLGRAG L+EA + I+++P++   ++W +LL
Sbjct: 587 VQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLL 646

Query: 402 SSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLK 461
           ++C    N+ +A    E+I  L     G YV+LSN+ A AGRW D+  +R  MK++G+ K
Sbjct: 647 AACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRK 706

Query: 462 VPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDE 521
            PG SSI++     EF SGD  H    +++  LDE+ +    +G+VPD S V   D++++
Sbjct: 707 PPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLM-DVDEK 765

Query: 522 EKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           EK   L  HSEKLA+ +GL+++  GTTIR+VKNLRVC
Sbjct: 766 EKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVC 802



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 223/425 (52%), Gaps = 11/425 (2%)

Query: 1   MATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLI 60
           +ATT +   +     K    TP++L     C +   LK  H    K  L ND++ +TKL+
Sbjct: 15  LATTTTTKPSLLNQSKCTKATPSSL---KNCKTIDELKMFHRSLTKQGLDNDVSTITKLV 71

Query: 61  NFCTQNPTTSSMEHAHLLFDRIPE-PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLL 119
               +  T  S+  A  +F+         ++N++ RGY+ S     AI LF+ ++NSG+ 
Sbjct: 72  ARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGIS 131

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179
           PD Y+FP  L ACA   + A   G Q+H   +K+G   +L+V  +L++ YAEC ++++AR
Sbjct: 132 PDKYTFPFGLSACA--KSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSAR 189

Query: 180 RIFENISEPCVVSYNAIITAYARSSRPNEALSL-FRELQERNLKPTDVTMLSALSSCALL 238
           ++F+ +SE  VVS+ ++I  YAR     +A+ L FR +++  + P  VTM+  +S+CA L
Sbjct: 190 KVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKL 249

Query: 239 GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMI 298
             L+ G+ ++ +I+  G++    + +AL+DM+ KC  +D A  +FD     +    +AM 
Sbjct: 250 EDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMA 309

Query: 299 VAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYG 357
             Y   G   +++ +F  MM + V PD I+ L  + +CS    +  G + + Y +R+ + 
Sbjct: 310 SNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFE 369

Query: 358 IVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
               I +   ++D+  +  R D A+R  D +  K T + W ++++    +  +  A +  
Sbjct: 370 SWDNICN--ALIDMYMKCHRQDTAFRIFDRMSNK-TVVTWNSIVAGYVENGEVDAAWETF 426

Query: 418 ERIFE 422
           E + E
Sbjct: 427 ETMPE 431



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 187/384 (48%), Gaps = 41/384 (10%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           QIH + +K     DL V   L++F  +      ++ A  +FD + E ++V + +M  GY+
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAE---CGELDSARKVFDEMSERNVVSWTSMICGYA 211

Query: 99  RSKTPIRAIFLFVELL-NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           R      A+ LF  ++ +  + P+  +   ++ ACA +  E LE G++++ F    G+  
Sbjct: 212 RRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKL--EDLETGEKVYAFIRNSGIEV 269

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           N  + + L+++Y +C+ ++ A+R+F+      +   NA+ + Y R     EAL +F  + 
Sbjct: 270 NDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMM 329

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           +  ++P  ++MLSA+SSC+ L ++  GK  H Y+ + G + +  +  ALIDM+ KC R D
Sbjct: 330 DSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQD 389

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM-------------------- 317
            A  +FD MS K    W++++  Y  +G+   +   FE M                    
Sbjct: 390 TAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSL 449

Query: 318 ----------MKAQ--VSPDEITFLGLLYACSHTGLVD-EGWNYFYSMRDKYGIVPGIKH 364
                     M++Q  V+ D +T + +  AC H G +D   W Y+Y   +K GI   ++ 
Sbjct: 450 FEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYI--EKNGIQLDVRL 507

Query: 365 YGCMVDLLGRAGRLDEAYRFIDEL 388
              +VD+  R G  + A    + L
Sbjct: 508 GTTLVDMFSRCGDPESAMSIFNSL 531


>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
 gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
          Length = 1530

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 178/476 (37%), Positives = 288/476 (60%), Gaps = 11/476 (2%)

Query: 4    TPSPPITQ----SPPPKLCTNTPNAL-SLLPRCTSFRGLKQIHA-VTIKTHLQNDLNVLT 57
            T  PP+TQ    S P       PN L S L  C +   +KQ+HA +T  + L N+L V  
Sbjct: 1060 TIDPPVTQILKISNPDFSFFMDPNCLISTLLNCKNICQIKQLHALITTNSVLYNNLTVAN 1119

Query: 58   KLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSG 117
            KL+     +   +    A+ LFD +P+ + V ++ M  G+ +    ++    F EL+ +G
Sbjct: 1120 KLLYVYVHHKCLTD---AYALFDEMPQKNPVSWSIMIGGFVKVGEFMQCYKTFKELIRNG 1176

Query: 118  LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEA 177
            + PD+Y+ P ++KAC      AL+ G+ +HC  +K GL+ + +VC  L+++YA+C  +E 
Sbjct: 1177 VQPDNYTLPFVIKACR--DTVALDMGRLIHCVVLKYGLHLDHFVCAALVDMYAKCKVIED 1234

Query: 178  ARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL 237
            A+ +F+ +    +V++  +I  YA      E+L LF  L+E    P  + M+S +++CA 
Sbjct: 1235 AKLLFDVMPSKDLVTWTVMIGGYAECGNAKESLVLFDHLREEGFVPDKIAMVSIVNACAK 1294

Query: 238  LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297
            LG+++  +++HEY+ +      V + TA+IDM+AKCG +D A  +FDNM  K+  +WSAM
Sbjct: 1295 LGAMNKARFVHEYVNRNRFSLDVILGTAMIDMYAKCGDVDSAREIFDNMHHKNVISWSAM 1354

Query: 298  IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG 357
            I AY  HGQG K++ +F  M+ + + P+ ITF+ LLYACSH GLV++G      M + +G
Sbjct: 1355 IAAYGYHGQGKKALELFPMMLSSGILPNNITFVSLLYACSHAGLVEDGLTLLSLMWESFG 1414

Query: 358  IVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
            + P IKH+ CMVDLLGRAG+L EA+RFI+ + ++    LW +LL +C  H  + LA++  
Sbjct: 1415 VRPDIKHHTCMVDLLGRAGQLTEAFRFIENMTVEKDEGLWSSLLGACRIHKRIDLAEKAA 1474

Query: 418  ERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNV 473
            + + EL   + G+Y++LSN+ A AG+W+DV  +R LM  R + K+PG + IE+ ++
Sbjct: 1475 KSLLELQPQNPGNYILLSNIYANAGQWKDVAKIRDLMTKRKLKKIPGYTWIELKSI 1530


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 193/547 (35%), Positives = 311/547 (56%), Gaps = 11/547 (2%)

Query: 13  PPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSM 72
           P      +  +AL  L R  + R   + HA  IK  L  DL V   L++   +     S+
Sbjct: 365 PDHACVVSLSSALGHLSRLNNGR---EFHAYAIKQRLHTDLQVGNTLMDMYIK---CGSI 418

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
           E +  +F+ +   D + + T+   +++S     A+ + +EL   G++ D     S+L+ C
Sbjct: 419 ECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETC 478

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
              G +++   KQ+HC+AI+ GL  +L +   LI++Y EC + + +  +F+ + +  +VS
Sbjct: 479 C--GLKSISLLKQVHCYAIRNGL-LDLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVS 535

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           + ++I     + R N A+ LF E+Q+ N++P  V ++S L + A L SL  GK +H ++ 
Sbjct: 536 WTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLI 595

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           +        V ++L+DM++ CG ++ A+ VF+    KD   W+AMI A   HG G ++I 
Sbjct: 596 RRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAID 655

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           +F+ M++  ++PD ++FL LLYACSH+ LV+EG +Y   M  KY + P  +HY C+VD+L
Sbjct: 656 LFKRMLQTGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDIL 715

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432
           GR+G+ +EAY FI  +P+     +W  LL +C  H N GLA     ++ EL+  + G+Y+
Sbjct: 716 GRSGQTEEAYEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDNPGNYI 775

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
           ++SN+ A  G+W +    R  M +RG+ K P CS IE+ N +  F SGD  H  S  +  
Sbjct: 776 LVSNVFAEMGKWNNAKETRTRMAERGLRKNPACSWIEIGNNIHTFTSGDYCHRDSEAIHL 835

Query: 493 ALDELVKELKMV-GYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
            L E+ + L+   GYV DT  V H D  +EEK   L  HSE++AI FGL++T PG  IR+
Sbjct: 836 KLSEITEMLRREGGYVEDTRFVLH-DTSEEEKIDMLHKHSERIAIAFGLISTRPGMPIRI 894

Query: 552 VKNLRVC 558
            KNLRVC
Sbjct: 895 AKNLRVC 901



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 210/424 (49%), Gaps = 23/424 (5%)

Query: 10  TQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQN---DLNVLTKLINFCTQN 66
           T++PP +   +    L L+    +    +Q+HA  + T   N   D  + TKL+    + 
Sbjct: 51  TRAPPAR--EHYGWVLDLVAARRAAAEGRQVHAHAVTTGSLNEDDDGFLATKLVFMYGR- 107

Query: 67  PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS---GLLPDDY 123
                ++ A  LF+ +P   +  +N +   Y  S +   A+ ++  +  S   G  PD  
Sbjct: 108 --CGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGC 165

Query: 124 SFPSLLKACACVGAEALEE-GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF 182
           +  S+LKAC   GAE     G ++H  A+K+GL+ +  V   LI +YA+C  +++A R+F
Sbjct: 166 TLASVLKAC---GAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRVF 222

Query: 183 ENISEPC--VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
           E + +    V S+N++++   ++ R  EAL+LFR +Q         T ++ L  CA LG 
Sbjct: 223 EWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGL 282

Query: 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVA 300
           L LG+ +H  + K G +  ++ N AL+ M+AK GR+D A+ VF  ++ KD  +W++M+  
Sbjct: 283 LSLGRELHAALLKCGSELNIQCN-ALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSC 341

Query: 301 YATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP 360
           Y  +    ++I  F EM++    PD    + L  A  H   ++ G   F++   K  +  
Sbjct: 342 YVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNG-REFHAYAIKQRLHT 400

Query: 361 GIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
            ++    ++D+  + G ++ + +  + + I+   I W T+L+  +  +      + +E I
Sbjct: 401 DLQVGNTLMDMYIKCGSIECSAKVFESMGIRD-HISWTTILACFAQSSR---HSEALEMI 456

Query: 421 FELD 424
            EL 
Sbjct: 457 LELQ 460



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 188/377 (49%), Gaps = 17/377 (4%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP--DIVLFNTMARG 96
           ++H + +K  L     V   LI    +      ++ A  +F+ + +   D+  +N++  G
Sbjct: 185 EVHGLAVKVGLDKSTLVANALIGMYAK---CGLLDSALRVFEWLQQDARDVASWNSVVSG 241

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
             ++   + A+ LF  + ++G   + Y+  ++L+ CA +G  +L  G++LH   +K G  
Sbjct: 242 CVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSL--GRELHAALLKCGSE 299

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            N+  C  L+ +YA+   V++A R+F  I+E   +S+N++++ Y ++S   EA+  F E+
Sbjct: 300 LNIQ-CNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEM 358

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
            +   +P    ++S  S+   L  L+ G+  H Y  K  L   ++V   L+DM+ KCG +
Sbjct: 359 LQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSI 418

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           + +  VF++M  +D  +W+ ++  +A   +  +++ M  E+ K  +  D +    +L  C
Sbjct: 419 ECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETC 478

Query: 337 ---SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
                  L+ +   + Y++R+  G++  I     ++D+ G  G  D +      +  K  
Sbjct: 479 CGLKSISLLKQ--VHCYAIRN--GLLDLILENR-LIDIYGECGEFDHSLNLFQRVE-KKD 532

Query: 394 PILWRTLLSSCSSHNNL 410
            + W ++++ C+++  L
Sbjct: 533 IVSWTSMINCCTNNGRL 549


>gi|224123200|ref|XP_002330363.1| predicted protein [Populus trichocarpa]
 gi|222871567|gb|EEF08698.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 192/534 (35%), Positives = 306/534 (57%), Gaps = 8/534 (1%)

Query: 28  LPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDI 87
           L  C  F      HA   K  L ND      L+N   +      +++AH LFD + EP++
Sbjct: 16  LKNCKDFIFAISTHANLFKFGLLNDTITTNHLLNSYLR---FRRIQYAHHLFDEMHEPNV 72

Query: 88  VLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLH 147
           V + ++  GY     P  A++L+ ++  S + P+ ++  +++ +C+ +    L+ GK +H
Sbjct: 73  VSWTSLMSGYVNMGRPQSALWLYTKMSESEVSPNGFTLATVINSCSILAD--LKTGKMVH 130

Query: 148 CFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPN 207
                LGL  NL VC++L+++Y +C+DV+ AR +F+++S   VVS+ A+I  YA++ +  
Sbjct: 131 AHVQILGLQGNLVVCSSLVDMYGKCNDVDGARMVFDSMSCRNVVSWTAMIAGYAQNGKGY 190

Query: 208 EALSLFRELQERNL-KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
           EAL +FRE     + +P    + S +++CA LG L  GK  H  + + G +    V +AL
Sbjct: 191 EALEVFREFSSYMMERPNHFMLASVINACASLGRLVSGKVTHGAVIRGGYELNDVVASAL 250

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           +DM+AKCG    +  VF  +       +++MIV  A +G G  S+ +FEEM   +V P++
Sbjct: 251 VDMYAKCGSFLYSEKVFRRIRNPSVIPYTSMIVGAAKYGLGKLSLNLFEEMTDRKVMPND 310

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
           +TF+G+L+ACSH+GLVDEG     SM +K+G++P ++HY C+VD+L R GRLDEAY+   
Sbjct: 311 VTFVGILHACSHSGLVDEGLRLLNSMHEKHGVMPDVRHYTCVVDMLSRVGRLDEAYKLAK 370

Query: 387 ELPI--KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444
            + +      +LW TLLSS   H  + +A +  + + E +    G YV LSN    AG W
Sbjct: 371 SIRVNPNEGALLWGTLLSSSRLHGRVDMAVEASKWLIEYNQQVAGAYVTLSNTYTLAGEW 430

Query: 445 EDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMV 504
           E+   LR  M+  GV K PGCS IE+ + +  F++GD       ++   L EL + +   
Sbjct: 431 ENAHSLRTEMELVGVHKEPGCSWIEIKDSIYVFYAGDLSCERGDEVISLLRELERRMMER 490

Query: 505 GYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           G V  ++ +   D+E E KE  +  HSE+LA+ FGL++ P G TIRV+KNLR+C
Sbjct: 491 GCVGGSTGLVFVDVEQEVKEKIVGLHSERLALAFGLISIPKGVTIRVMKNLRIC 544


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 186/478 (38%), Positives = 285/478 (59%), Gaps = 7/478 (1%)

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
           D V +N M     + +  + A+ LF E++  GL  D ++  S+L A  CV  + L  G+Q
Sbjct: 207 DEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCV--KDLVGGRQ 264

Query: 146 LHCFAIKLGLNSNLYVCTTLINLYAECS-DVEAARRIFENISEPCVVSYNAIITAYARSS 204
            H   IK G + N +V + LI+LY++C+  +   R++FE I+ P +V +N +I+ ++   
Sbjct: 265 FHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGFSLYE 324

Query: 205 RPNE-ALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD-KYVKV 262
             +E  L  FRE+Q    +P D + +   S+C+ L S  LGK +H    K  +    V V
Sbjct: 325 DLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSV 384

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
           N AL+ M++KCG + DA  VFD M   +T + ++MI  YA HG   +S+ +FE M++  +
Sbjct: 385 NNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDI 444

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
           +P+ ITF+ +L AC HTG V+EG  YF  M++++ I P  +HY CM+DLLGRAG+L EA 
Sbjct: 445 APNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEAE 504

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
           R I+ +P     I W TLL +C  H N+ LA +       L+  +   YV+LSN+ A A 
Sbjct: 505 RIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPYNAAPYVMLSNMYASAA 564

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           RWE+   +++LM++RGV K PGCS IE++  V  F + D  H    ++   + +++K++K
Sbjct: 565 RWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGKMLKKMK 624

Query: 503 MVGYVPDT--SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             GYVPD   +LV   ++E +E+E  L YHSEKLA+ FGL++T  G  I VVKNLR+C
Sbjct: 625 QAGYVPDIRWALVKDEEVEPDERERRLLYHSEKLAVAFGLISTEEGVPILVVKNLRIC 682



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 115/454 (25%), Positives = 204/454 (44%), Gaps = 27/454 (5%)

Query: 14  PPKLCTNTPNALSLL-PRCTSFRGLKQIHAVTIKTHLQNDLNVLT--KLINFCTQNPTTS 70
           PP   T   N  +LL  +C S      +H      HL    NV +   LIN   ++   S
Sbjct: 41  PPS--TYLSNHFTLLYSKCGS------LHNAQTSFHLTQYPNVFSYNTLINAYAKH---S 89

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130
            +  A  +FD IP+PDIV +NT+   Y+        + LF E+    L  D ++   ++ 
Sbjct: 90  LIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRELRLGLDGFTLSGVIT 149

Query: 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC- 189
           AC     + +   +QLHCF +  G +    V   ++  Y+    +  ARR+F  + E   
Sbjct: 150 AC----GDDVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFREMGEGGG 205

Query: 190 --VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
              VS+NA+I A  +     EA+ LFRE+  R LK    TM S L++   +  L  G+  
Sbjct: 206 RDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGRQF 265

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKC-GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ 306
           H  + K G      V + LID+++KC G + +   VF+ ++  D   W+ MI  ++ +  
Sbjct: 266 HGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGFSLYED 325

Query: 307 -GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGI-VPGIKH 364
                +  F EM +    PD+ +F+ +  ACS+      G    +++  K  +    +  
Sbjct: 326 LSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLG-KQVHALAIKSDVPYNRVSV 384

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
              +V +  + G + +A R  D +P  +T  L  ++++  + H     + ++ E + E D
Sbjct: 385 NNALVAMYSKCGNVHDARRVFDTMPEHNTVSL-NSMIAGYAQHGVEVESLRLFELMLEKD 443

Query: 425 DSHGG-DYVILSNLCARAGRWEDVDYLRKLMKDR 457
            +     ++ + + C   G+ E+      +MK+R
Sbjct: 444 IAPNSITFIAVLSACVHTGKVEEGQKYFNMMKER 477



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 160/358 (44%), Gaps = 53/358 (14%)

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           +F +LLKAC  +    L  GK LH    K  +  + Y+      LY++C  +  A+  F 
Sbjct: 11  TFRNLLKAC--IAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFH 68

Query: 184 NISEPCVVSYNAIITAYARSS-------------RPN------------------EALSL 212
               P V SYN +I AYA+ S             +P+                    L L
Sbjct: 69  LTQYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRL 128

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           F E++E  L     T+   +++C     + L + +H ++   G D Y  VN A++  +++
Sbjct: 129 FEEVRELRLGLDGFTLSGVITACG--DDVGLVRQLHCFVVVCGHDCYASVNNAVLACYSR 186

Query: 273 CGRLDDAVSVFDNM---SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITF 329
            G L +A  VF  M    G+D  +W+AMIVA   H +G +++ +F EM++  +  D  T 
Sbjct: 187 KGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTM 246

Query: 330 LGLLYACSHTGLVD-EGWNYFYSMRDKYGIVPGIKHYGC-MVDLLGR-AGRLDEAYRFID 386
             +L A   T + D  G   F+ M  K G   G  H G  ++DL  + AG + E  +  +
Sbjct: 247 ASVLTA--FTCVKDLVGGRQFHGMMIKSGF-HGNSHVGSGLIDLYSKCAGSMVECRKVFE 303

Query: 387 ELPIKSTPILWRTLLSSCS-----SHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439
           E+      +LW T++S  S     S + L   +++    F  DD     +V +++ C+
Sbjct: 304 EITAPDL-VLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDC---SFVCVTSACS 357



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 108/249 (43%), Gaps = 46/249 (18%)

Query: 38  KQIHAVTIKTHL-QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           KQ+HA+ IK+ +  N ++V   L+   ++     ++  A  +FD +PE + V  N+M  G
Sbjct: 366 KQVHALAIKSDVPYNRVSVNNALVAMYSK---CGNVHDARRVFDTMPEHNTVSLNSMIAG 422

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           Y++    + ++ LF  +L   + P+  +F ++L AC   G   +EEG++           
Sbjct: 423 YAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTG--KVEEGQK----------- 469

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
                     N+  E               EP    Y+ +I    R+ +  EA    R +
Sbjct: 470 --------YFNMMKE-----------RFCIEPEAEHYSCMIDLLGRAGKLKEAE---RII 507

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEYIK--KYGLDKYVKVNTALIDMHAKC 273
           +     P  +   + L +C   G+++L  K  +E+++   Y    YV     L +M+A  
Sbjct: 508 ETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPYNAAPYV----MLSNMYASA 563

Query: 274 GRLDDAVSV 282
            R ++A +V
Sbjct: 564 ARWEEAATV 572


>gi|356570490|ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Glycine max]
          Length = 582

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 196/544 (36%), Positives = 313/544 (57%), Gaps = 11/544 (2%)

Query: 18  CTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHL 77
           C +    L       S R   Q+H   IK   +    V   LINF ++    +++ H+ L
Sbjct: 7   CRDICKVLVWFTHTRSLRKGLQLHGQVIKLGFEAIPLVCHHLINFYSK----TNLPHSSL 62

Query: 78  -LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            LFD  P      ++++   ++++  P+ A+  F  +L  GLLPDD++ P+  K+ A + 
Sbjct: 63  KLFDSFPHKSATTWSSVISSFAQNDLPLPALRFFRRMLRHGLLPDDHTLPTAAKSVAALS 122

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
           +  L         ++K   + +++V ++L++ YA+C DV  AR++F+ +    VVS++ +
Sbjct: 123 SLPLALSLHA--LSLKTAHHHDVFVGSSLVDTYAKCGDVNLARKVFDEMPHKNVVSWSGM 180

Query: 197 ITAYARSSRPNEALSLFREL--QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           I  Y++     EAL+LF+    Q+ +++  D T+ S L  C+     +LGK +H    K 
Sbjct: 181 IYGYSQMGLDEEALNLFKRALEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKT 240

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
             D    V ++LI +++KCG ++    VF+ +  ++   W+AM++A A H    ++  +F
Sbjct: 241 SFDSSCFVASSLISLYSKCGVVEGGYKVFEEVKVRNLGMWNAMLIACAQHAHTGRTFELF 300

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
           EEM +  V P+ ITFL LLYACSH GLV++G + F  M++ +GI PG +HY  +VDLLGR
Sbjct: 301 EEMERVGVKPNFITFLCLLYACSHAGLVEKGEHCFGLMKE-HGIEPGSQHYATLVDLLGR 359

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
           AG+L+EA   I E+P++ T  +W  LL+ C  H N  LA  V +++FE+     G  V+L
Sbjct: 360 AGKLEEAVLVIKEMPMQPTESVWGALLTGCRIHGNTELASFVADKVFEMGAVSSGIQVLL 419

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
           SN  A AGRWE+    RK+M+D+G+ K  G S +E  N V  F +GD  H  + ++ + L
Sbjct: 420 SNAYAAAGRWEEAARARKMMRDQGIKKETGLSWVEEGNRVHTFAAGDRSHGKTREIYEKL 479

Query: 495 DELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
           +EL +E+   GYV DTS V   +++ +EK   +RYHSE+LAI FGL+  PP   IRV+KN
Sbjct: 480 EELGEEMAKAGYVADTSFVLK-EVDGDEKSQTIRYHSERLAIAFGLITFPPEWPIRVMKN 538

Query: 555 LRVC 558
           LRVC
Sbjct: 539 LRVC 542


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 186/537 (34%), Positives = 309/537 (57%), Gaps = 17/537 (3%)

Query: 26  SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S++  CT    ++   Q+H++ ++    +D  V   L++   ++    +M++A+ +F+R+
Sbjct: 259 SMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERM 318

Query: 83  PEPDIVLFNTMARGYSRSKTPI-RAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
            + D++ +  +  GY +S     + + LF E+LN  + P+  ++ S+LKACA +     +
Sbjct: 319 RKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDH--D 376

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G+Q+H   IK    +   V   L+++YAE   +E ARR+F  + E  ++S    IT   
Sbjct: 377 SGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIS---CIT--- 430

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
                     L   +   ++  +  T  S +S+ A +G L  G+ +H    K G      
Sbjct: 431 ----EGRDAPLDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRF 486

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V+ +L+ M+++CG L+DA   F+ +  ++  +W++MI   A HG   +++ +F +M+   
Sbjct: 487 VSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTG 546

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           V P+++T++ +L ACSH GLV EG  YF SM+  +G++P ++HY CMVDLL R+G + EA
Sbjct: 547 VKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEA 606

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
             FI+E+P+K+  ++W+TLL +C SH+N+ + +   + + EL+      YV+LSNL A A
Sbjct: 607 LEFINEMPLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYADA 666

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           G W++V  +R  M+D  + K  G S +EV N   EF +GD  H  + D+   LD LV E+
Sbjct: 667 GLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVGEI 726

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K +GYVPDTS+V H DM DE KE  L  HSEK+A+ FGL+ T     IR+ KNLRVC
Sbjct: 727 KGMGYVPDTSIVLH-DMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVC 782



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 196/414 (47%), Gaps = 40/414 (9%)

Query: 2   ATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDL-------- 53
           +T P  P + +  P L ++ P+ +S L    +  G  ++     +  L+ DL        
Sbjct: 28  STFPRYPKSLAAHPALSSSHPSDVSALLAAAARAGDLRLGRALHRRLLRGDLLDRDAVVA 87

Query: 54  NVLTKLINFCTQNPTTSSMEHAHLLFDRIPE-PDIVLFNTMARGYSRSKTPIRAIFLFVE 112
           N L  L + C       ++  A  +FD +    DIV +  MA   +R+     ++ L  E
Sbjct: 88  NSLLTLYSRC------GAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLIGE 141

Query: 113 LLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAI--------KLGL-NSNLYVCT 163
           +L SGLLP+ Y+  ++  AC            +L+C           K+GL  +++ V +
Sbjct: 142 MLESGLLPNAYTLCAVAHACF---------PHELYCLVGGVVLGLVHKMGLWGTDIAVGS 192

Query: 164 TLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKP 223
            LI++ A   D+ +AR++F+ + E  VV +  +I+ Y +     EA+ +F +  E   +P
Sbjct: 193 ALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEP 252

Query: 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG---RLDDAV 280
              TM S +S+C  LGS+ LG  +H    + G      V+  L+DM+AK      +D A 
Sbjct: 253 DRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYAN 312

Query: 281 SVFDNMSGKDTQAWSAMIVAYATHG-QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
            VF+ M   D  +W+A+I  Y   G Q +K +++F EM+   + P+ IT+  +L AC++ 
Sbjct: 313 KVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANI 372

Query: 340 GLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
              D G   + + ++        + +   +V +   +G ++EA R  ++L  +S
Sbjct: 373 SDHDSGRQVHAHVIKSNQAAAHTVGN--ALVSMYAESGCMEEARRVFNQLYERS 424


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 199/577 (34%), Positives = 327/577 (56%), Gaps = 46/577 (7%)

Query: 21  TPNALSL---LPRCTSFRGLK---QIHAVTIKTHLQ-NDLNVLTKLINFCTQNPTTSSME 73
           TPN++++   +  C     L+   +++A    + ++ NDL +++ L++   +    ++++
Sbjct: 233 TPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDL-MVSALVDMYMK---CNAID 288

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
            A  LFD     ++ L N MA  Y R      A+ +F  +++SG+ PD  S  S + +C+
Sbjct: 289 VAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCS 348

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
            +    +  GK  H + ++ G  S   +C  LI++Y +C   + A RIF+ +S   VV++
Sbjct: 349 QL--RNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTW 406

Query: 194 NAIITAYARSSRPNEALSLFRELQERNL-------------------------------- 221
           N+I+  Y  +   + A   F  + E+N+                                
Sbjct: 407 NSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGV 466

Query: 222 KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVS 281
               VTM+S  S+C  LG+LDL KWI+ YI+K G+   V++ T L+DM ++CG  + A+S
Sbjct: 467 NADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMS 526

Query: 282 VFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341
           +F++++ +D  AW+A I A A  G   ++I +F++M++  + PD + F+G L ACSH GL
Sbjct: 527 IFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGL 586

Query: 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
           V +G   FYSM   +G+ P   HYGCMVDLLGRAG L+EA + I+++P++   ++W +LL
Sbjct: 587 VQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLL 646

Query: 402 SSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLK 461
           ++C    N+ +A    E+I  L     G YV+LSN+ A AGRW D+  +R  MK++G+ K
Sbjct: 647 AACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRK 706

Query: 462 VPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDE 521
            PG SSI++     EF SGD  H    +++  LDE+ +    +G+VPD S V   D++++
Sbjct: 707 PPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLM-DVDEK 765

Query: 522 EKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           EK   L  HSEKLA+ +GL+++  GTTIR+VKNLRVC
Sbjct: 766 EKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVC 802



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 223/425 (52%), Gaps = 11/425 (2%)

Query: 1   MATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLI 60
           +ATT +   +     K    TP++L     C +   LK  H    K  L ND++ +TKL+
Sbjct: 15  LATTTTTKPSLLNQSKCTKATPSSL---KNCKTIDELKMFHRSLTKQGLDNDVSTITKLV 71

Query: 61  NFCTQNPTTSSMEHAHLLFDRIPE-PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLL 119
               +  T  S+  A  +F+         ++N++ RGY+ S     AI LF+ ++NSG+ 
Sbjct: 72  ARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGIS 131

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179
           PD Y+FP  L ACA   + A   G Q+H   +K+G   +L+V  +L++ YAEC ++++AR
Sbjct: 132 PDKYTFPFGLSACA--KSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSAR 189

Query: 180 RIFENISEPCVVSYNAIITAYARSSRPNEALSL-FRELQERNLKPTDVTMLSALSSCALL 238
           ++F+ +SE  VVS+ ++I  YAR     +A+ L FR +++  + P  VTM+  +S+CA L
Sbjct: 190 KVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKL 249

Query: 239 GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMI 298
             L+ G+ ++ +I+  G++    + +AL+DM+ KC  +D A  +FD     +    +AM 
Sbjct: 250 EDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMA 309

Query: 299 VAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYG 357
             Y   G   +++ +F  MM + V PD I+ L  + +CS    +  G + + Y +R+ + 
Sbjct: 310 SNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFE 369

Query: 358 IVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
               I +   ++D+  +  R D A+R  D +  K T + W ++++    +  +  A +  
Sbjct: 370 SWDNICN--ALIDMYMKCHRQDTAFRIFDRMSNK-TVVTWNSIVAGYVENGEVDAAWETF 426

Query: 418 ERIFE 422
           E + E
Sbjct: 427 ETMPE 431



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 187/384 (48%), Gaps = 41/384 (10%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           QIH + +K     DL V   L++F  +      ++ A  +FD + E ++V + +M  GY+
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAE---CGELDSARKVFDEMSERNVVSWTSMICGYA 211

Query: 99  RSKTPIRAIFLFVELL-NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           R      A+ LF  ++ +  + P+  +   ++ ACA +  E LE G++++ F    G+  
Sbjct: 212 RRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKL--EDLETGEKVYAFIRNSGIEV 269

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           N  + + L+++Y +C+ ++ A+R+F+      +   NA+ + Y R     EAL +F  + 
Sbjct: 270 NDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMM 329

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           +  ++P  ++MLSA+SSC+ L ++  GK  H Y+ + G + +  +  ALIDM+ KC R D
Sbjct: 330 DSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQD 389

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM-------------------- 317
            A  +FD MS K    W++++  Y  +G+   +   FE M                    
Sbjct: 390 TAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSL 449

Query: 318 ----------MKAQ--VSPDEITFLGLLYACSHTGLVD-EGWNYFYSMRDKYGIVPGIKH 364
                     M++Q  V+ D +T + +  AC H G +D   W Y+Y   +K GI   ++ 
Sbjct: 450 FEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYI--EKNGIQLDVRL 507

Query: 365 YGCMVDLLGRAGRLDEAYRFIDEL 388
              +VD+  R G  + A    + L
Sbjct: 508 GTTLVDMFSRCGDPESAMSIFNSL 531


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 192/544 (35%), Positives = 315/544 (57%), Gaps = 11/544 (2%)

Query: 20  NTPNALSLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           +T    S+LP C     +     IH   +K  L +D+ V   LIN  ++      ++ A 
Sbjct: 221 DTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSK---FGRLQDAQ 277

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
           ++FD++   D+V +N++   Y ++  P  A+  F  +   G+ PD  +  SL    + + 
Sbjct: 278 MVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLS 337

Query: 137 AEALEEGKQLHCFAIKL-GLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
            + +   + +  F I+   L+ ++ +   L+N+YA+   +  A  +F+ +     +S+N 
Sbjct: 338 DQRIS--RSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNT 395

Query: 196 IITAYARSSRPNEALSLFRELQE-RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           ++T Y ++   +EA+  +  ++E R+  P   T +S + + + +G+L  G  IH  + K 
Sbjct: 396 LVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKN 455

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
            L   V V T LID++ KCGRL+DA+S+F  +    +  W+A+I +   HG+G +++ +F
Sbjct: 456 SLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLF 515

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
           ++M+  +V  D ITF+ LL ACSH+GLVDEG   F  M+ +YGI P +KHYGCMVDLLGR
Sbjct: 516 KDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGR 575

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
           AG L++AY  +  +PI+    +W  LLS+C  + N  L     +R+ E+D  + G YV+L
Sbjct: 576 AGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLL 635

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
           SN+ A   +WE V  +R L +DRG+ K PG SS+ V +    F++G+  H   T++ K L
Sbjct: 636 SNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKEL 695

Query: 495 DELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
             L  ++K +GYVPD S V+  D+E++EKE  L  HSE+LAI FG+++TPP + IR+ KN
Sbjct: 696 KVLSAKMKSLGYVPDYSFVYQ-DIEEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKN 754

Query: 555 LRVC 558
           LRVC
Sbjct: 755 LRVC 758



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/404 (28%), Positives = 202/404 (50%), Gaps = 30/404 (7%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP 85
           +L   C +    K++HA+ +      ++ + TKLIN      T   +  +   FD I + 
Sbjct: 27  ALFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYV---THGDISLSRSTFDYIHKK 83

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLN----SGLLPDDYSFPSLLKACACVGAEALE 141
           +I  +N++   Y R      A+    +L +      L PD Y+FP +LKAC      +L 
Sbjct: 84  NIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV-----SLV 138

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           +GK++HC   K+G   +++V  +L++LY+    ++ A ++F ++    V S+NA+I+ + 
Sbjct: 139 DGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFC 198

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++     AL +   ++   +K   +T+ S L  CA    +  G  IH ++ K+GLD  V 
Sbjct: 199 QNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVF 258

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V+ ALI+M++K GRL DA  VFD M  +D  +W+++I AY  +     ++  F+ M    
Sbjct: 259 VSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGG 318

Query: 322 VSPDEITFLGLLYACSHTGLVDE-------GWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
           + PD +T + L    S   L D+       G+       DK  +V G      +V++  +
Sbjct: 319 IRPDLLTVVSLTSIFSQ--LSDQRISRSILGFVIRREWLDK-DVVIG----NALVNMYAK 371

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
            G ++ A+   D+LP K T I W TL++  + +   GLA + I+
Sbjct: 372 LGYMNCAHTVFDQLPRKDT-ISWNTLVTGYTQN---GLASEAID 411


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 192/544 (35%), Positives = 315/544 (57%), Gaps = 11/544 (2%)

Query: 20  NTPNALSLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           +T    S+LP C     +     IH   +K  L +D+ V   LIN  ++      ++ A 
Sbjct: 221 DTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSK---FGRLQDAQ 277

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
           ++FD++   D+V +N++   Y ++  P  A+  F  +   G+ PD  +  SL    + + 
Sbjct: 278 MVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLS 337

Query: 137 AEALEEGKQLHCFAIKL-GLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
            + +   + +  F I+   L+ ++ +   L+N+YA+   +  A  +F+ +     +S+N 
Sbjct: 338 DQRIS--RSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNT 395

Query: 196 IITAYARSSRPNEALSLFRELQE-RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           ++T Y ++   +EA+  +  ++E R+  P   T +S + + + +G+L  G  IH  + K 
Sbjct: 396 LVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKN 455

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
            L   V V T LID++ KCGRL+DA+S+F  +    +  W+A+I +   HG+G +++ +F
Sbjct: 456 SLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLF 515

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
           ++M+  +V  D ITF+ LL ACSH+GLVDEG   F  M+ +YGI P +KHYGCMVDLLGR
Sbjct: 516 KDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGR 575

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
           AG L++AY  +  +PI+    +W  LLS+C  + N  L     +R+ E+D  + G YV+L
Sbjct: 576 AGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLL 635

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
           SN+ A   +WE V  +R L +DRG+ K PG SS+ V +    F++G+  H   T++ K L
Sbjct: 636 SNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKEL 695

Query: 495 DELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
             L  ++K +GYVPD S V+  D+E++EKE  L  HSE+LAI FG+++TPP + IR+ KN
Sbjct: 696 KVLSAKMKSLGYVPDYSFVYQ-DIEEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKN 754

Query: 555 LRVC 558
           LRVC
Sbjct: 755 LRVC 758



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/404 (28%), Positives = 202/404 (50%), Gaps = 30/404 (7%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP 85
           +L   C +    K++HA+ +      ++ + TKLIN      T   +  +   FD I + 
Sbjct: 27  ALFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYV---THGDISLSRSTFDYIHKK 83

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLN----SGLLPDDYSFPSLLKACACVGAEALE 141
           +I  +N++   Y R      A+    +L +      L PD Y+FP +LKAC      +L 
Sbjct: 84  NIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV-----SLV 138

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           +GK++HC   K+G   +++V  +L++LY+    ++ A ++F ++    V S+NA+I+ + 
Sbjct: 139 DGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFC 198

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++     AL +   ++   +K   +T+ S L  CA    +  G  IH ++ K+GLD  V 
Sbjct: 199 QNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVF 258

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V+ ALI+M++K GRL DA  VFD M  +D  +W+++I AY  +     ++  F+ M    
Sbjct: 259 VSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGG 318

Query: 322 VSPDEITFLGLLYACSHTGLVDE-------GWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
           + PD +T + L    S   L D+       G+       DK  +V G      +V++  +
Sbjct: 319 IRPDLLTVVSLTSIFSQ--LSDQRISRSILGFVIRREWLDK-DVVIG----NALVNMYAK 371

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
            G ++ A+   D+LP K T I W TL++  + +   GLA + I+
Sbjct: 372 LGYMNCAHTVFDQLPRKDT-ISWNTLVTGYTQN---GLASEAID 411


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 197/545 (36%), Positives = 303/545 (55%), Gaps = 19/545 (3%)

Query: 23  NALSLLP--RCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFD 80
           NA S+LP    T+F  L+Q  A+ + +  ++++   T L  +   N     +  A   FD
Sbjct: 227 NACSMLPVGSATAFV-LEQ--AMEVVSATRDNVLGTTLLTTYARSN----DLSRARATFD 279

Query: 81  RIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEAL 140
            I  PD+V +N MA  Y +   P  A+ LF  +L  G+ P   +F + L ACA    +  
Sbjct: 280 AIQSPDVVSWNAMAAAYLQHHRPREALVLFERMLLEGVRPSVATFITALTACAAYPPQTA 339

Query: 141 EE-GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS---EPCVVSYNAI 196
              GK++     + GL  +  V    +N+YA+C  +  AR +FE IS     C+ ++N++
Sbjct: 340 SAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPTRRDCI-TWNSM 398

Query: 197 ITAYARSSRPNEALSLFRELQ-ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           + AY       EA  LF+ ++ E+ +KP  VT ++ L +     S+  G+ IH  +   G
Sbjct: 399 LAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNG 458

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG--KDTQAWSAMIVAYATHGQGHKSILM 313
            +    +  AL++M+AKCG LDDA ++FD  S   +D  AW++++  YA +GQ  +++ +
Sbjct: 459 FESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLVAGYAQYGQAERALKL 518

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           F  M +  V P+ ITF+  L AC+H G +++G      M   +GIVP  KH+ C+VDLLG
Sbjct: 519 FWTMQQQGVRPNHITFISALTACNHGGKLEQGCELLSGMTPDHGIVPASKHFSCIVDLLG 578

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI 433
           R GRLDEA + + E   ++  I W  LL +C +   L   ++  ERI +LD      Y++
Sbjct: 579 RCGRLDEAEKLL-ERTSQADVITWMALLDACKNSKELERGERCAERIMQLDPEVASSYIV 637

Query: 434 LSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKA 493
           L+++ A AGRW +   +RK M D+G+   PGCS++EVN  +  F +GD  H  S ++   
Sbjct: 638 LASMYAAAGRWNEAATIRKTMLDKGIRADPGCSAVEVNQELHSFSAGDKSHPKSEEIYLE 697

Query: 494 LDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVK 553
           L+ L   +K  GYV DT LV H D+  E KE  L  HSEKLAI FGL++TP G+ +RV+K
Sbjct: 698 LERLHWSIKAAGYVADTGLVLH-DVSQEHKERLLMRHSEKLAIAFGLMSTPSGSPLRVIK 756

Query: 554 NLRVC 558
           NLRVC
Sbjct: 757 NLRVC 761



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 174/360 (48%), Gaps = 15/360 (4%)

Query: 71  SMEHAHLLFDRIPEP---DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP-DDYSFP 126
           S+  A   FDR+P     D+V +N M   + R+ +   A+ LF ++ + G  P +  +F 
Sbjct: 57  SLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFV 116

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF--EN 184
           S+L +C   G  +LE+ + +H   +  G+    +V T L++ Y +   ++ A  +F  ++
Sbjct: 117 SVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKS 176

Query: 185 ISEPC--VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242
             EP   +V+ +A+I+A  ++  P E+L LF  +     KP+ VT++S L++C++L    
Sbjct: 177 DEEPSTSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACSMLPVGS 236

Query: 243 LGKWIHEY-IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
              ++ E  ++     +   + T L+  +A+   L  A + FD +   D  +W+AM  AY
Sbjct: 237 ATAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAY 296

Query: 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH--TGLVDEGWNYFYSMRDKYGIV 359
             H +  +++++FE M+   V P   TF+  L AC+               S+ ++ G+ 
Sbjct: 297 LQHHRPREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLE 356

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
                    +++  + G L +A    + + P +   I W ++L++   H   GL K+  E
Sbjct: 357 GDTAVANATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHH---GLGKEAFE 413



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 12/228 (5%)

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179
           P+ ++  +L+ AC+C+G   L  G+++H          N  +   LI++Y++C  +  A+
Sbjct: 5   PNCHALIALVNACSCLGN--LAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAK 62

Query: 180 RIFENI---SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTD-VTMLSALSSC 235
           + F+ +   S+  VV++NA+I+A+ R+    EAL LFR++      P + VT +S L SC
Sbjct: 63  QAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSC 122

Query: 236 ALLG--SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ- 292
              G  SL+  + IH  I   G+++   V TAL+D + K G LDDA  VF   S ++   
Sbjct: 123 VEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPST 182

Query: 293 ---AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
                SAMI A   +G   +S+ +F  M      P  +T + +L ACS
Sbjct: 183 SLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACS 230



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 101/198 (51%), Gaps = 20/198 (10%)

Query: 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV 280
           ++P    +++ +++C+ LG+L  G+ IH  I     ++   +  ALI M++KCG L DA 
Sbjct: 3   VRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAK 62

Query: 281 SVFDNM---SGKDTQAWSAMIVAYATHGQGHKSILMFEEM-MKAQVSPDEITFLGLLYAC 336
             FD +   S +D   W+AMI A+  +G   +++ +F +M       P+ +TF+ +L +C
Sbjct: 63  QAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSC 122

Query: 337 SHTGLVDEGWNYFYSMRDKYG--IVPGIKHYG----CMVDLLGRAGRLDEAY----RFID 386
              GL+         +R  +G  +  GI+        +VD  G+ G LD+A+    R  D
Sbjct: 123 VEAGLLS-----LEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSD 177

Query: 387 ELPIKSTPILWRTLLSSC 404
           E P  ++ +    ++S+C
Sbjct: 178 EEP-STSLVTCSAMISAC 194


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 178/512 (34%), Positives = 298/512 (58%), Gaps = 9/512 (1%)

Query: 50  QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFL 109
           Q D      +I  C Q+     +  A  LFD     D+  +NT+  G  R      A+  
Sbjct: 189 QKDATSWNIVIRACLQD---GDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGR 245

Query: 110 FVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLY 169
             +++ +G+   +Y++  +      + +  L  G+QLH   +   L  + +V  +L+++Y
Sbjct: 246 LQQMVRAGVTFSNYTYSMVFALAGLLSSRDL--GRQLHGRVVVAVLEEDAFVGCSLMDMY 303

Query: 170 AECSDVEAARRIFE---NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV 226
            +C ++E+A  IF+   + +E    +++ ++  Y ++ R  EAL  FR +    +     
Sbjct: 304 CKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQF 363

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
            + S  S+CA  G ++ G+ +H +++K G      + +A++DM++K G L+DA  +F + 
Sbjct: 364 ILTSVASACANAGMVEQGRQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSA 423

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
             K+   W+ M+ +YA+HGQG  ++ +F  M   ++ P+EIT + +L ACSH+GLV +G+
Sbjct: 424 QTKNVALWTTMLCSYASHGQGRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGY 483

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
           +YF  M+++YGIVP  +HY CMVDL GRAG LD+A  FI+E  I    ++W+TLLS+C  
Sbjct: 484 HYFNLMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKTLLSACRL 543

Query: 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCS 466
           H ++  A+   E++ +L+    G YV++SN+ A   +W D   LR  MK+R V K PG S
Sbjct: 544 HKHIEYAQLASEKLVQLEQYDAGSYVLMSNMYATNNKWLDTFKLRSSMKERRVRKQPGQS 603

Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
            I + NVV  F + D  H  S ++   L++L++ LK +GY   T LV H D+E+E++E +
Sbjct: 604 WIHLKNVVHRFVALDTSHPRSAEIYAYLEKLMERLKEMGYTSRTDLVVH-DIEEEQRETS 662

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           L++HSEKLAI FG+++TP GT +R+ KNLRVC
Sbjct: 663 LKFHSEKLAIAFGIISTPVGTALRIFKNLRVC 694



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 182/391 (46%), Gaps = 52/391 (13%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN--SGLLPDDYSFPSLL 129
           + +AH +FD  P   +  + ++  G +R       +  F E+L+      P+ +    +L
Sbjct: 74  LHNAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVL 133

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE-- 187
           + CA +G   +E G+++H + ++ G+  ++ +C  ++++YA+C D   ARR F  +++  
Sbjct: 134 RCCAGLGD--VESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKD 191

Query: 188 ---------PC--------------------VVSYNAIITAYARSSRPNEALSLFRELQE 218
                     C                    V S+N I++   R     EAL   +++  
Sbjct: 192 ATSWNIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVR 251

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
             +  ++ T     +   LL S DLG+ +H  +    L++   V  +L+DM+ KCG ++ 
Sbjct: 252 AGVTFSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMES 311

Query: 279 AVSVFDNMSG--KDTQ-AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           A+S+FD  S   +D Q AWS M+  Y  +G+  +++  F  M++  V   +     +  A
Sbjct: 312 ALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASA 371

Query: 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHY------GCMVDLLGRAGRLDEAYRFIDELP 389
           C++ G+V++G       R  +G V  + H         +VD+  ++G L++A R      
Sbjct: 372 CANAGMVEQG-------RQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQ 424

Query: 390 IKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
            K+   LW T+L S +SH    +A ++  R+
Sbjct: 425 TKNVA-LWTTMLCSYASHGQGRMALEIFSRM 454


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 167/398 (41%), Positives = 257/398 (64%), Gaps = 1/398 (0%)

Query: 161 VCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN 220
           V   L+++YA+    + A  +FE +++  V+S+ +++T    +    EAL LF E++   
Sbjct: 4   VNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMG 63

Query: 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV 280
           + P  + + + LS+CA L  L+ GK +H    K GL   + V+ +L+ M+AKCG ++DA 
Sbjct: 64  IHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDAN 123

Query: 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG 340
            VFD+M  +D   W+A+IV YA +G+G +S+  + +M+ + V PD ITF+GLL+ACSH G
Sbjct: 124 KVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAG 183

Query: 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400
           LV+ G +YF SM + YGI PG +HY CM+DLLGR+G+L EA   ++++ ++    +W+ L
Sbjct: 184 LVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKAL 243

Query: 401 LSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460
           L++C  H N+ L ++    +FEL+  +   YV+LSNL + AG+WE+    R+LMK RGV 
Sbjct: 244 LAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVS 303

Query: 461 KVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMED 520
           K PGCS IE+++ V  F S D  H  + ++   +DE++  +K  GYVPD +   H DM++
Sbjct: 304 KEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALH-DMDE 362

Query: 521 EEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           E KE+ L YHSEKLA+ FGLL  PPG  IR+ KNLR+C
Sbjct: 363 EGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRIC 400



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 133/237 (56%), Gaps = 4/237 (1%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
            ++A  +F+++ + D++ + ++  G   + +   A+ LF E+   G+ PD     ++L A
Sbjct: 18  FDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSA 77

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           CA +    LE GKQ+H   +K GL S+L V  +L+++YA+C  +E A ++F+++    V+
Sbjct: 78  CAEL--TVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVI 135

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           ++ A+I  YA++ R  E+L+ + ++    +KP  +T +  L +C+  G ++ G+   + +
Sbjct: 136 TWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSM 195

Query: 252 KK-YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHGQ 306
           ++ YG+    +    +ID+  + G+L +A  + + M+ + D   W A++ A   HG 
Sbjct: 196 EEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGN 252



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 102/231 (44%), Gaps = 27/231 (11%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           LS     T     KQ+HA  +K+ L + L+V   L++   +      +E A+ +FD +  
Sbjct: 75  LSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAK---CGCIEDANKVFDSMEI 131

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
            D++ +  +  GY+++     ++  + +++ SG+ PD  +F  LL AC+  G   +E G+
Sbjct: 132 QDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAG--LVEHGR 189

Query: 145 QL-----HCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS-EPCVVSYNAIIT 198
                    + IK G     Y C  +I+L      +  A+ +   ++ +P    + A++ 
Sbjct: 190 SYFQSMEEVYGIKPG--PEHYAC--MIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLA 245

Query: 199 A---YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW 246
           A   +        A +   EL+ +N  P    +LS L S A       GKW
Sbjct: 246 ACRVHGNVELGERAANNLFELEPKNAVP--YVLLSNLYSAA-------GKW 287


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 187/515 (36%), Positives = 287/515 (55%), Gaps = 38/515 (7%)

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
           F+ I     V++N M  GY +S     A  LF  +++  + PD+++F SLL ACA  G  
Sbjct: 253 FEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGF- 311

Query: 139 ALEEGKQLHCFAIKLGLN----SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
               GK +H   I+L  +    + L V   L+ LY++   +  A +IF++++   VVS+N
Sbjct: 312 -FLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWN 370

Query: 195 AIITAYARSS-------------------------------RPNEALSLFRELQERNLKP 223
            I++ Y  S                                   +AL LF +++  ++KP
Sbjct: 371 TILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKP 430

Query: 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVF 283
            D T   A+++C  LG+L  GK +H ++ + G +       AL+ M+A+CG + DA  VF
Sbjct: 431 CDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVF 490

Query: 284 DNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVD 343
             M   D+ +W+AMI A   HG G +++ +F++M+   + PD I+FL +L AC+H GLVD
Sbjct: 491 LVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVD 550

Query: 344 EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
           +G+ YF SM   +GI PG  HY  ++DLLGRAGR+ EA   I  +P + TP +W  +LS 
Sbjct: 551 DGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSG 610

Query: 404 CSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVP 463
           C  + ++ L     +++F++   H G Y++LSN  + AGRW D   +RKLM+DRGV K P
Sbjct: 611 CRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEP 670

Query: 464 GCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEK 523
           GCS IEV N V  F  GD  H  + ++ + L+ +  +++ +GYVPDT      DM   EK
Sbjct: 671 GCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVPDTKFALQ-DMAPHEK 729

Query: 524 EIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           E  L  HSE+LA++FGLL  P G T+ V+KNL++C
Sbjct: 730 EYVLFAHSERLAVSFGLLKLPAGATVTVLKNLKIC 764



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 132/490 (26%), Positives = 198/490 (40%), Gaps = 118/490 (24%)

Query: 78  LFDRIP--EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS--GLLPDDYSFPSLLKACA 133
            FD +P    D VL N M   ++R+     A+ +F  LL S   L PDDYSF SLL A  
Sbjct: 111 FFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVG 170

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC--------------------- 172
            +   A+    QLHC   KLG  + L V   LI LY +C                     
Sbjct: 171 QMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDE 230

Query: 173 -------------SDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
                         DV AAR  FE I     V +NA+I+ Y +S    EA  LFR +  +
Sbjct: 231 LTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSK 290

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIH-EYIK---KYGLDKYVKVNTALIDMHAKCGR 275
            + P + T  S LS+CA  G    GK +H ++I+    +  +  + VN AL+ +++K G+
Sbjct: 291 RIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGK 350

Query: 276 LDDAVSVFDNMSGKDTQAWS-------------------------------AMIVAYATH 304
           +  A  +FD+M+ KD  +W+                                M+  Y   
Sbjct: 351 IAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHG 410

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG------------------W 346
           G    ++ +F +M    V P + T+ G + AC   G +  G                   
Sbjct: 411 GLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAG 470

Query: 347 NYFYSMRDKYG----------IVPGIK--HYGCMVDLLGRAGRLDEAYRFIDEL---PIK 391
           N   +M  + G          ++P +    +  M+  LG+ G   EA    D++    I 
Sbjct: 471 NALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIY 530

Query: 392 STPILWRTLLSSCSSHNNLGLAK------QVIERIFELDDSHGGD-YVILSNLCARAGRW 444
              I + T+L++C   N+ GL        + +ER F +  S G D Y  L +L  RAGR 
Sbjct: 531 PDRISFLTILTAC---NHAGLVDDGFQYFESMERDFGI--SPGEDHYARLIDLLGRAGRI 585

Query: 445 EDVDYLRKLM 454
            +   L K M
Sbjct: 586 GEARDLIKTM 595



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 152/337 (45%), Gaps = 22/337 (6%)

Query: 69  TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSL 128
           +  +++A  +F  +P    + +  M  GY        A+ LF ++ +  + P DY++   
Sbjct: 379 SGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGA 438

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP 188
           + AC  +GA  L+ GKQLH   ++ G  ++      L+ +YA C  V+ AR +F  +   
Sbjct: 439 VAACGELGA--LKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNV 496

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWI 247
             VS+NA+I+A  +     EAL LF ++  + + P  ++ L+ L++C   G +D G ++ 
Sbjct: 497 DSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYF 556

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA-WSAMIVAYATHGQ 306
               + +G+         LID+  + GR+ +A  +   M  + T A W A++     +G 
Sbjct: 557 ESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGD 616

Query: 307 GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY- 365
                   +++ K  V   + T++ L    S  G   +       MRD+     G+K   
Sbjct: 617 MELGAYAADQLFK-MVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDR-----GVKKEP 670

Query: 366 GC---------MVDLLGRAGRLD--EAYRFIDELPIK 391
           GC          V L+G     D  E YRF++ +  K
Sbjct: 671 GCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAK 707



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 126/283 (44%), Gaps = 44/283 (15%)

Query: 163 TTLINLYAECSDVEAARRIFENI--SEPCVVSYNAIITAYARSSRPNEALSLFREL--QE 218
           T+L++ YA    +  +   F+++  +    V +NA+I+A+AR+S    A+S+FR L   +
Sbjct: 93  TSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASD 152

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGK--WIHEYIKKYGLDKYVKVNTALIDMHAKC--- 273
            +L+P D +  S LS+   +  L +     +H  + K G    + V+ ALI ++ KC   
Sbjct: 153 DSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAP 212

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE----------------- 316
           G   DA  V D M  KD   W+ ++V +   G  H +   FEE                 
Sbjct: 213 GVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYV 272

Query: 317 --------------MMKAQVSPDEITFLGLLYACSHTGLVDEGWNY---FYSMRDKYGIV 359
                         M+  ++ PDE TF  LL AC++ G    G +    F  ++  +   
Sbjct: 273 QSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPE 332

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
             +     +V L  ++G++  A +  D + +K   + W T+LS
Sbjct: 333 AALPVNNALVTLYSKSGKIAVATKIFDSMTLKDV-VSWNTILS 374



 Score = 45.4 bits (106), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 65/297 (21%), Positives = 116/297 (39%), Gaps = 52/297 (17%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           KQ+HA  ++   +   +    L+   T      +++ A L+F  +P  D V +N M    
Sbjct: 452 KQLHAHLVQCGFEASNSAGNALL---TMYARCGAVKDARLVFLVMPNVDSVSWNAMISAL 508

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            +      A+ LF +++  G+ PD  SF ++L AC   G   +++G Q            
Sbjct: 509 GQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAG--LVDDGFQY----------- 555

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
                             E+  R F  IS P    Y  +I    R+ R  EA  L + + 
Sbjct: 556 -----------------FESMERDF-GIS-PGEDHYARLIDLLGRAGRIGEARDLIKTMP 596

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
               +PT     + LS C + G ++LG +  + + K  + ++      L + ++  GR  
Sbjct: 597 ---FEPTPAIWEAILSGCRINGDMELGAYAADQLFKM-VPEHDGTYILLSNTYSAAGRWV 652

Query: 278 DAVSVFDNMSGKDTQ-----AW-------SAMIVAYATHGQGHKSILMFEEMMKAQV 322
           DA  V   M  +  +     +W          +V    H   H+ +  F EM+ A++
Sbjct: 653 DAARVRKLMRDRGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHE-VYRFLEMVGAKM 708


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 193/520 (37%), Positives = 299/520 (57%), Gaps = 39/520 (7%)

Query: 39   QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
            QIHA  ++  L  ++ V   LI+   +      +  A  + D +P  D+V +N++  G +
Sbjct: 1147 QIHAAVVRVGLDLNVFVGNGLISMYGK---CGCLVEACRVLDZMPCRDVVSWNSLVAGCA 1203

Query: 99   RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
            R+     A+ +  E+   GL PD  +  SLL A                           
Sbjct: 1204 RNGQFDDALEVCKEMELLGLKPDAGTMASLLPA--------------------------- 1236

Query: 159  LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
              V  T ++      +V   + +F  ++   +VS+N +I  Y  +S P EA+ +F ++++
Sbjct: 1237 --VTNTCLD------NVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMED 1288

Query: 219  RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
              + P  +++ S L +C  L +L LG+ IHEY+ +  L   + +  ALIDM+AKCG L+ 
Sbjct: 1289 HAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEY 1348

Query: 279  AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
            A  VFD M  +D  +W++MI AY  +G+G  ++ +F  M    ++PD I F+ +L ACSH
Sbjct: 1349 AREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSH 1408

Query: 339  TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
             GL+DEG  YF  M ++  IVP I+H+ CMVDLLGRAG++DEAY FI ++P++    +W 
Sbjct: 1409 AGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWG 1468

Query: 399  TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458
             LLS+C  ++N+ +     +++F+L     G YV+LSN+ A+AGRWEDV  +R +MK +G
Sbjct: 1469 ALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKG 1528

Query: 459  VLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDM 518
            + K+PG S+ E++N V  F +GD  H  S  + + LD LV ++K  GYVP+T    H D+
Sbjct: 1529 IKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVLVGKMKEAGYVPETDSALH-DV 1587

Query: 519  EDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            E+E+KE  L  HSEKLAI F +LNT PG+ IR+ KNLRVC
Sbjct: 1588 EEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVC 1627



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 204/440 (46%), Gaps = 56/440 (12%)

Query: 27   LLPRCTSFRGLKQIHA-VTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP 85
            +L +    + LK++H+ + I   L ++ ++  KL+          S  H   +FD IP+ 
Sbjct: 1033 ILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRH---IFDEIPKK 1089

Query: 86   DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
            ++V FN M R Y  +     A+ +F  +   G+ PD Y++P +LKA +  G+E L  G Q
Sbjct: 1090 NVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASS--GSEDLWVGMQ 1147

Query: 146  LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC--VVSYNAIITAYARS 203
            +H   +++GL+ N++V   LI++Y +C  +  A R+ + +  PC  VVS+N+++   AR+
Sbjct: 1148 IHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZM--PCRDVVSWNSLVAGCARN 1205

Query: 204  SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
             + ++AL + +E++   LKP   TM S L +                            N
Sbjct: 1206 GQFDDALEVCKEMELLGLKPDAGTMASLLPAV--------------------------TN 1239

Query: 264  TALIDMHAKCGRLDDAVS----VFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
            T L           D VS    +F  ++ K   +W+ MI  Y  +    +++ +F +M  
Sbjct: 1240 TCL-----------DNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMED 1288

Query: 320  AQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
              V PD I+   +L AC     +  G   + Y +R +  + P +     ++D+  + G L
Sbjct: 1289 HAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKR--LQPNLLLENALIDMYAKCGCL 1346

Query: 379  DEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD-DSHGGDYVILSNL 437
            + A    D++  +   + W +++S+   +     A  +  R+ +L  +     +V + + 
Sbjct: 1347 EYAREVFDQMKFRDV-VSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSA 1405

Query: 438  CARAGRWEDVDYLRKLMKDR 457
            C+ AG  ++  Y  KLM + 
Sbjct: 1406 CSHAGLLDEGRYYFKLMTEE 1425



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 122/277 (44%), Gaps = 51/277 (18%)

Query: 22   PNALSL---LPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
            P+A+S+   LP C     L   ++IH   ++  LQ +L +   LI+   +      +E+A
Sbjct: 1293 PDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAK---CGCLEYA 1349

Query: 76   HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
              +FD++   D+V + +M   Y  +     A+ LF  + + GL PD  +F S+L AC+  
Sbjct: 1350 REVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHA 1409

Query: 136  GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
            G   L+EG+    +  KL              +  EC  V            P +  +  
Sbjct: 1410 G--LLDEGR----YYFKL--------------MTEECKIV------------PRIEHFVC 1437

Query: 196  IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
            ++    R+ + +EA    +++    ++P +    + LS+C +  ++ +G    + + +  
Sbjct: 1438 MVDLLGRAGQVDEAYGFIKQMP---MEPNERVWGALLSACRVYSNMIIGLLAADQLFQLC 1494

Query: 256  LDK---YVKVNTALIDMHAKCGRLDDAVSVFDNMSGK 289
             ++   YV     L +++AK GR +D  +V   M  K
Sbjct: 1495 PEQSGYYV----LLSNIYAKAGRWEDVTTVRSIMKTK 1527


>gi|297820424|ref|XP_002878095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323933|gb|EFH54354.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 651

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 188/544 (34%), Positives = 304/544 (55%), Gaps = 5/544 (0%)

Query: 17  LCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           +C      + +L  C S   L++IH+  I   L +  ++   L+ FC  +    S+ +A 
Sbjct: 1   MCEKARVIVRMLQGCNSMNKLRKIHSHVIINGLHHHPSIFNHLLRFCAVS-VNGSLSYAQ 59

Query: 77  LLFDRI-PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL-LPDDYSFPSLLKACAC 134
           LLFDR   +P    +N + RG+S S +P+  I  +  +L S +  PD ++F   LKAC  
Sbjct: 60  LLFDRFDSDPSTSAWNYLIRGFSISSSPLYTILYYNRMLLSSVSRPDIFTFSFALKACER 119

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           +    + +  +LH   I+ G  ++  V T L+  Y+    VE A ++F+ +    +VS+N
Sbjct: 120 I--RLIPKCLELHGSVIRSGFLADAIVSTNLVRCYSANGSVEIASKVFDEMPVRDLVSWN 177

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           A+I+ ++ +   ++A S++  +    +     T+++ LSSCA + +L++G  +H      
Sbjct: 178 AMISCFSHAGLHHQAFSMYSRMANEGVCVDAYTIVALLSSCAHVSALNMGVMLHRIACDI 237

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
             +  V V  ALIDM+AKCG L++AV VF  M  +D   W++MI+ Y  HG G ++I  F
Sbjct: 238 RCESSVFVCNALIDMYAKCGSLENAVGVFKGMRKRDVLTWNSMIIGYGVHGHGVEAISFF 297

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
            +M+ + V P+ +TFLGLL  CSH GLV EG  +F  M  ++ + P +KHYGCMVDL GR
Sbjct: 298 RKMVASGVRPNAVTFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLFGR 357

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
           AG+L++A   I        P+LWRTLL SC  H NL L +  ++++ +L+  + GDYV++
Sbjct: 358 AGQLEKALEMIHTSSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLM 417

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
           +++ + A   +    +RKL++   +  +PG S IE+ + V +F   D +H  S  +   L
Sbjct: 418 TSIYSAANDAQGFASMRKLIRSHDLRTIPGWSWIEIGDQVHKFVIDDKMHPESALIYSEL 477

Query: 495 DELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
            E++    + GY P+ S      + D   E A   HSEKLAI +GL+ T  GTT+R+ KN
Sbjct: 478 GEVINRAILAGYKPEDSNRTAHTLSDRCLESADTSHSEKLAIAYGLMRTTAGTTLRITKN 537

Query: 555 LRVC 558
           LRVC
Sbjct: 538 LRVC 541


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 188/522 (36%), Positives = 309/522 (59%), Gaps = 8/522 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K++HA  I+  L +++ +   LI+   +      M +A   F+ + E D++ + T+  GY
Sbjct: 369 KEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYA---FECMHEKDLISWTTIIAGY 425

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           ++++  + AI LF ++   G+  D     S+L+AC+  G ++    +++H +  K  L +
Sbjct: 426 AQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACS--GLKSRNFIREIHGYVFKRDL-A 482

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           ++ +   ++N+Y E    + ARR FE+I    +VS+ ++IT    +  P EAL LF  L+
Sbjct: 483 DIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLK 542

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           + N++P  + ++SALS+ A L SL  GK IH ++ + G      + ++L+DM+A CG ++
Sbjct: 543 QTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVE 602

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           ++  +F ++  +D   W++MI A   HG G+++I +F++M    V PD ITFL LLYACS
Sbjct: 603 NSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACS 662

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H+GL+ EG  +F  M+  Y + P  +HY CMVDLL R+  L+EAY+F+  +PIK +  +W
Sbjct: 663 HSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVW 722

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             LL +C  H+N  L +   + + + D  + G Y ++SN+ A  GRW DV+ +R  MK  
Sbjct: 723 CALLGACHIHSNKELGELAAKELLQSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGN 782

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL-KMVGYVPDTSLVHHG 516
           G+ K PGCS IEV+N +  F + D  H  + D+   L +  K L K  GY+  T  V H 
Sbjct: 783 GLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLGKKGGYIAQTKFVFH- 841

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           ++ +EEK   L  HSE+LA+ +GLL TP GT+IR+ KNLR+C
Sbjct: 842 NVSEEEKTQMLYRHSERLALGYGLLVTPKGTSIRITKNLRIC 883



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 126/436 (28%), Positives = 209/436 (47%), Gaps = 45/436 (10%)

Query: 27  LLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           LL  C + + L   +Q+HA  +K+HL   L   TKL++   +     S++ A  +FD + 
Sbjct: 52  LLDLCVAVKALPQGQQLHARLLKSHLSAFL--ATKLLHMYEK---CGSLKDAVKVFDEMT 106

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
           E  I  +N M   +  S   + AI L+ E+   G+  D  +FPS+LKAC  +G   L  G
Sbjct: 107 ERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRL--G 164

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI--SEPCVVSYNAIITAYA 201
            ++H  A+K G    ++VC  LI +Y +C D+  AR +F+ I   +   VS+N+II+A+ 
Sbjct: 165 AEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHV 224

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
              +  EALSLFR +QE  +     T ++AL        + LG  IH    K      V 
Sbjct: 225 TEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVY 284

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V  ALI M+AKCGR++DA  VF +M  +D  +W+ ++     +     ++  F +M  + 
Sbjct: 285 VANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSA 344

Query: 322 VSPDEITFLGLLYACSHTG-LVDEGWNYFYSMR--------------DKYGIVPGIKHYG 366
             PD+++ L L+ A   +G L++    + Y++R              D Y     +KH G
Sbjct: 345 QKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMG 404

Query: 367 ----CM--VDLLGR----AGRLD-----EAYRFIDELPIKST---PILWRTLLSSCSSHN 408
               CM   DL+      AG        EA     ++ +K     P++  ++L +CS   
Sbjct: 405 YAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLK 464

Query: 409 NLGLAKQVIERIFELD 424
           +    +++   +F+ D
Sbjct: 465 SRNFIREIHGYVFKRD 480



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 188/396 (47%), Gaps = 23/396 (5%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI--PEPDIVLFNTMARG 96
           +IH V +K      + V   LI           +  A +LFD I   + D V +N++   
Sbjct: 166 EIHGVAVKCGFGEFVFVCNALI---AMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISA 222

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           +      + A+ LF  +   G+  + Y+F + L+         ++ G  +H  A+K    
Sbjct: 223 HVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVE--DPSFVKLGMGIHGAALKSNHF 280

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
           +++YV   LI +YA+C  +E A R+F ++     VS+N +++   ++    +AL+ FR++
Sbjct: 281 ADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDM 340

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           Q    KP  V++L+ +++    G+L  GK +H Y  + GLD  +++   LIDM+AKC  +
Sbjct: 341 QNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCV 400

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
                 F+ M  KD  +W+ +I  YA +    ++I +F ++    +  D +    +L AC
Sbjct: 401 KHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRAC 460

Query: 337 SHTGLVDEGWNYFYSMRDKYGIV-----PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIK 391
           S  GL    +     +R+ +G V       I     +V++ G  G  D A R  +   I+
Sbjct: 461 S--GLKSRNF-----IREIHGYVFKRDLADIMLQNAIVNVYGEVGHRDYARRAFE--SIR 511

Query: 392 STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
           S  I+  T + +C  HN  GL  + +E  + L  ++
Sbjct: 512 SKDIVSWTSMITCCVHN--GLPVEALELFYSLKQTN 545



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 157/313 (50%), Gaps = 10/313 (3%)

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
           CV  +AL +G+QLH   +K  L++  ++ T L+++Y +C  ++ A ++F+ ++E  + ++
Sbjct: 56  CVAVKALPQGQQLHARLLKSHLSA--FLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTW 113

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           NA++ A+  S +  EA+ L++E++   +     T  S L +C  LG   LG  IH    K
Sbjct: 114 NAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVK 173

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN--MSGKDTQAWSAMIVAYATHGQGHKSI 311
            G  ++V V  ALI M+ KCG L  A  +FD   M  +DT +W+++I A+ T G+  +++
Sbjct: 174 CGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEAL 233

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +F  M +  V+ +  TF+  L        V  G    +    K      +     ++ +
Sbjct: 234 SLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMG-IHGAALKSNHFADVYVANALIAM 292

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS-HGGD 430
             + GR+++A R    +  +   + W TLLS    +    L +  +    ++ +S    D
Sbjct: 293 YAKCGRMEDAERVFASMLCRDY-VSWNTLLSGLVQNE---LYRDALNYFRDMQNSAQKPD 348

Query: 431 YVILSNLCARAGR 443
            V + NL A +GR
Sbjct: 349 QVSVLNLIAASGR 361


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 183/487 (37%), Positives = 286/487 (58%), Gaps = 3/487 (0%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +E A  +F+ + + D + + TM  G +++     A+ +F  +   G+  D Y+F S+L A
Sbjct: 231 VEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTA 290

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C  + A   EEGKQ+H + I+   + N++V + L+++Y++C  +  A  +F  ++   ++
Sbjct: 291 CGALAAS--EEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNII 348

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+ A+I  Y ++    EA+ +F E+Q   +KP D T+ S +SSCA L SL+ G   H   
Sbjct: 349 SWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMA 408

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
              GL  Y+ V++AL+ ++ KCG ++DA  +FD M   D  +++A++  YA  G+  ++I
Sbjct: 409 LVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETI 468

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +FE+M+   V P+ +TF+G+L ACS +GLV++G +YF+SM+  +GIV    HY CM+DL
Sbjct: 469 DLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDL 528

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
             R+GRL EA  FI ++P     I W TLLS+C    ++ + K   E + + D  +   Y
Sbjct: 529 YSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPASY 588

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           V+L ++ A  G W +V  LR+ M+DR V K PGCS I+  N V  F + D  H +S  + 
Sbjct: 589 VLLCSMHASKGEWSEVALLRRGMRDRQVKKEPGCSWIKYKNRVHIFSADDQSHPFSGTIY 648

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
           + L  L  ++   GY PD S V H D+ D EK   L  HSEKLAI FGL+  P    IRV
Sbjct: 649 EKLQWLNSKMAEEGYKPDVSSVLH-DVADAEKVHMLSNHSEKLAIAFGLIFVPEEMPIRV 707

Query: 552 VKNLRVC 558
           VKNLRVC
Sbjct: 708 VKNLRVC 714



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 116/450 (25%), Positives = 217/450 (48%), Gaps = 58/450 (12%)

Query: 61  NFCTQNPTTSSMEHAHLL------FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL 114
           N  T+N   S++ HA LL      F  +P+ D V +N +  G+S +  P RA   +  LL
Sbjct: 75  NLFTRNALLSALAHARLLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALL 134

Query: 115 -------NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLIN 167
                   + + P   +   ++ A + +G  AL  G+Q+HC  ++LG  +  +  + L++
Sbjct: 135 REEAVVDGARVRPSRITMSGMVMAASALGDRAL--GRQVHCQIMRLGFGAYAFTWSPLVD 192

Query: 168 LYAE-------------------------------CSDVEAARRIFENISEPCVVSYNAI 196
           +YA+                               C  VE AR +FE + +   +++  +
Sbjct: 193 MYAKMGLIGDAKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTM 252

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           +T   ++   +EAL +FR ++   +     T  S L++C  L + + GK IH Y  +   
Sbjct: 253 VTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLY 312

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
           D  + V +AL+DM++KC  +  A +VF  M+ K+  +W+AMIV Y  +G G +++ +F E
Sbjct: 313 DGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSE 372

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M    + P++ T   ++ +C++   ++EG   F+ M    G+ P I     +V L G+ G
Sbjct: 373 MQTDGIKPNDFTLGSVISSCANLASLEEGAQ-FHCMALVSGLRPYITVSSALVTLYGKCG 431

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL-----DDSHGGDY 431
            +++A+R  DE+P     + +  L+   S +   G AK+ I+ +FE         +G  +
Sbjct: 432 SIEDAHRLFDEMPFHDQ-VSYTALV---SGYAQFGKAKETID-LFEKMLLKGVKPNGVTF 486

Query: 432 VILSNLCARAGRWED-VDYLRKLMKDRGVL 460
           + + + C+R+G  E    Y   + +D G++
Sbjct: 487 IGVLSACSRSGLVEKGCSYFHSMQQDHGIV 516



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 147/284 (51%), Gaps = 7/284 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           KQIHA TI+T    ++ V + L++  ++     S+  A  +F R+   +I+ +  M  GY
Sbjct: 301 KQIHAYTIRTLYDGNIFVGSALVDMYSK---CRSIRLAEAVFRRMTCKNIISWTAMIVGY 357

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            ++     A+ +F E+   G+ P+D++  S++ +CA +   +LEEG Q HC A+  GL  
Sbjct: 358 GQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLA--SLEEGAQFHCMALVSGLRP 415

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            + V + L+ LY +C  +E A R+F+ +     VSY A+++ YA+  +  E + LF ++ 
Sbjct: 416 YITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKML 475

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
            + +KP  VT +  LS+C+  G ++ G  + H   + +G+       T +ID++++ GRL
Sbjct: 476 LKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRL 535

Query: 277 DDAVSVFDNM-SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
            +A      M    D   W+ ++ A    G         E ++K
Sbjct: 536 KEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAAENLLK 579



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 41/231 (17%)

Query: 26  SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S++  C +   L+   Q H + + + L+  + V + L+   T      S+E AH LFD +
Sbjct: 387 SVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALV---TLYGKCGSIEDAHRLFDEM 443

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           P  D V +  +  GY++       I LF ++L  G+ P+  +F  +L AC+  G   +E+
Sbjct: 444 PFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSG--LVEK 501

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G                  C+   ++  +   V     + ++        Y  +I  Y+R
Sbjct: 502 G------------------CSYFHSMQQDHGIV-----LLDD-------HYTCMIDLYSR 531

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           S R  EA    R++      P  +   + LS+C L G +++GKW  E + K
Sbjct: 532 SGRLKEAEEFIRQMPR---CPDAIGWATLLSACRLRGDMEIGKWAAENLLK 579



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 100/239 (41%), Gaps = 50/239 (20%)

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           N ++TAYARS R   A  LF  + + NL  T   +LSAL+   LL  +D           
Sbjct: 49  NHLLTAYARSGRLPLARRLFDAMPDPNLF-TRNALLSALAHARLLPDMD----------- 96

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI-- 311
                                       +F +M  +D  +++A+I  ++  G   ++   
Sbjct: 97  ---------------------------RLFASMPQRDAVSYNALIAGFSGAGAPARAAGA 129

Query: 312 ---LMFEEMM--KAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHY 365
              L+ EE +   A+V P  IT  G++ A S  G    G   +   MR  +G       +
Sbjct: 130 YRALLREEAVVDGARVRPSRITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFT--W 187

Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
             +VD+  + G + +A R  DE+ +K+  +++ T+++       +  A+ V E + + D
Sbjct: 188 SPLVDMYAKMGLIGDAKRVFDEMVVKNV-VMYNTMITGLLRCKMVEEARGVFEAMVDRD 245


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  348 bits (892), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 203/607 (33%), Positives = 316/607 (52%), Gaps = 76/607 (12%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           PN   +    ++F+  KQIH V+  + L  D  V   + +   +      M  A  +FDR
Sbjct: 120 PNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMR---CGRMGDARKVFDR 176

Query: 82  IPEPD-----------------------------------IVLFNTMARGYSRSKTPIRA 106
           + + D                                   IV +N +  G++RS     A
Sbjct: 177 MSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEA 236

Query: 107 IFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI 166
           + +F ++ + G  PD  +  S+L +     +E L  G+ +H + IK GL  +  V + +I
Sbjct: 237 VVMFQKIHHLGFCPDQVTVSSVLPSVG--DSEMLNMGRLIHGYVIKQGLLKDKCVISAMI 294

Query: 167 NLYAECSDV-------------------------------EAARRIFENISEPC----VV 191
           ++Y +   V                               + A  +FE   E      VV
Sbjct: 295 DMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVV 354

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+ +II   A++ +  EAL LFRE+Q   +KP  VT+ S L +C  + +L  G+  H + 
Sbjct: 355 SWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFA 414

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            +  L   V V +ALIDM+AKCGR++ +  VF+ M  K+   W++++  ++ HG+  + +
Sbjct: 415 VRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVM 474

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +FE +M+ ++ PD I+F  LL AC   GL DEGW YF  M ++YGI P ++HY CMV+L
Sbjct: 475 SIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNL 534

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
           LGRAG+L EAY  I E+P +    +W  LL+SC   NN+ LA+   E++F L+  + G Y
Sbjct: 535 LGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTY 594

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           V+LSN+ A  G W +VD +R  M+  G+ K PGCS I+V N V    +GD  H     + 
Sbjct: 595 VLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQIT 654

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
           + +DE+ KE++  G+ P+     H D+E++E+E  L  HSEKLA+ FGLLNTP GT ++V
Sbjct: 655 EKMDEISKEMRKSGHRPNLDFALH-DVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQV 713

Query: 552 VKNLRVC 558
           +KNLR+C
Sbjct: 714 IKNLRIC 720



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 119/503 (23%), Positives = 223/503 (44%), Gaps = 99/503 (19%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           Q HA  +K+  QND  +  KLI         +    A L+   IP+P I  F+++    +
Sbjct: 36  QAHARILKSGAQNDGYISAKLI---ASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALT 92

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
           ++K   ++I +F  + + GL+PD +  P+L K CA +   A + GKQ+HC +   GL+ +
Sbjct: 93  KAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAEL--SAFKVGKQIHCVSCVSGLDMD 150

Query: 159 LYVCTTLINLYAECSDVEAARRIFENIS-------------------------------- 186
            +V  ++ ++Y  C  +  AR++F+ +S                                
Sbjct: 151 AFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMES 210

Query: 187 ---EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
              E  +VS+N I++ + RS    EA+ +F+++      P  VT+ S L S      L++
Sbjct: 211 SGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNM 270

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ----------- 292
           G+ IH Y+ K GL K   V +A+IDM+ K G +   +S+F+     +             
Sbjct: 271 GRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSR 330

Query: 293 ------------------------AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT 328
                                   +W+++I   A +G+  +++ +F EM  A V P+ +T
Sbjct: 331 NGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVT 390

Query: 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK-----HYG-CMVDLLGRAGRLDEAY 382
              +L AC +   +  G       R  +G    +      H G  ++D+  + GR++ + 
Sbjct: 391 IPSMLPACGNIAALGHG-------RSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQ 443

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE--LDDSHGGDYVILSNLCAR 440
              + +P K+  + W +L++  S H   G AK+V+  IFE  +      D++  ++L + 
Sbjct: 444 IVFNMMPTKNL-VCWNSLMNGFSMH---GKAKEVMS-IFESLMRTRLKPDFISFTSLLSA 498

Query: 441 AGRW----EDVDYLRKLMKDRGV 459
            G+     E   Y + + ++ G+
Sbjct: 499 CGQVGLTDEGWKYFKMMSEEYGI 521


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 180/454 (39%), Positives = 276/454 (60%), Gaps = 5/454 (1%)

Query: 32  TSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFN 91
           ++ R  K++H   +K    +D+ V + L+   +Q+  T  ME   L+F  +   +IV + 
Sbjct: 142 SALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGME---LVFGEMVVRNIVSWT 198

Query: 92  TMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAI 151
            +  GY +++     + +F E++ SG  P+  +  S+L ACA  G E L  GK +H + I
Sbjct: 199 AVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACA--GLEFLNLGKLIHGYGI 256

Query: 152 KLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALS 211
           KLG++ ++ +   LI LY +C +VE AR +F+ +    +VS+NA+I AY +++    A+ 
Sbjct: 257 KLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVK 316

Query: 212 LFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271
           LFR +Q   +    +TM+S +S+CA LG+L+ G+W+HE +K+ GL+  V +  ALIDM+A
Sbjct: 317 LFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYA 376

Query: 272 KCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLG 331
           KCG +D A  VF+ +  +   +W++MI A A+HG G  ++ +F  M    V P+  TF  
Sbjct: 377 KCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAA 436

Query: 332 LLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIK 391
           +  AC H+GLV+EG  +F SM   Y I+PG++H  CMVDLLGRAG L EAY FID++P++
Sbjct: 437 VFTACRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVE 496

Query: 392 STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLR 451
               +W  LL SC  H+NL LA+ V E++F LD      YV++SN+ A AGRWED   LR
Sbjct: 497 PDVSVWGALLGSCRIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLR 556

Query: 452 KLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHS 485
           KLM++R + K+PG S +EVN     F SG    S
Sbjct: 557 KLMEERELKKIPGHSLVEVNRRFHTFLSGSRSQS 590



 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 124/395 (31%), Positives = 225/395 (56%), Gaps = 8/395 (2%)

Query: 27  LLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLI-NFCTQNPTTSSMEHAHLLFDRIPEP 85
           LL  C+S   L +IHA+ +      +L + TKLI   C   PT   M++A  +FD++P+ 
Sbjct: 35  LLNCCSSLPDLSRIHALVVTNGCGQNLLLSTKLIITACCLAPT---MDYARKMFDQMPKR 91

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
           D+ L+NT+ RGY+ +     A+ L+  +  +GL PD+Y+FP ++++CA +   AL EGK+
Sbjct: 92  DVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVL--SALREGKE 149

Query: 146 LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSR 205
           +HC  +K G +S+++V ++L+ +Y++  +      +F  +    +VS+ A+I  Y ++  
Sbjct: 150 VHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRY 209

Query: 206 PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTA 265
             E L +FRE+     +P  VT++S L +CA L  L+LGK IH Y  K G+D  V +  A
Sbjct: 210 FKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNA 269

Query: 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
           LI ++ KCG ++ A S+FD M  ++  +W+AMI AY  +  G  ++ +F  M   +V  D
Sbjct: 270 LIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFD 329

Query: 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI 385
            IT + ++ AC+  G ++ G  + + +  + G+   +     ++D+  + G +D A    
Sbjct: 330 YITMVSVISACASLGALNTG-RWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVF 388

Query: 386 DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
           + LP +S  + W +++ +C+SH +   A ++  R+
Sbjct: 389 ERLPCRSV-VSWTSMIGACASHGHGEDALKLFSRM 422


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 192/520 (36%), Positives = 299/520 (57%), Gaps = 39/520 (7%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           QIHA  ++  L  ++ V   LI+   +      +  A  + D++P  D+V +N++  G +
Sbjct: 158 QIHAAVVRVGLDLNVFVGNGLISMYGK---CGCLVEACRVLDQMPCRDVVSWNSLVAGCA 214

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
           R+     A+ +  E+   GL PD  +  SLL A                           
Sbjct: 215 RNGQFDDALEVCKEMELLGLKPDAGTMASLLPA--------------------------- 247

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
             V  T ++      +V   + +F  ++   +VS+N +I  Y  +S P EA+ +F ++++
Sbjct: 248 --VTNTCLD------NVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMED 299

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
             + P  +++ S L +C  L +L LG+ IHEY+ +  L   + +  ALIDM+AKCG L+ 
Sbjct: 300 HAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEY 359

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A  VFD M  +D  +W++MI AY  +G+G  ++ +F  M    ++PD I F+ +L ACSH
Sbjct: 360 AREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSH 419

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
            GL+DEG  YF  M ++  IVP I+H+ CMVDLLGRAG++DEAY FI ++P++    +W 
Sbjct: 420 AGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWG 479

Query: 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458
            LLS+C  ++N+ +     +++F+L     G YV+LSN+ A+AGRWEDV  +R +MK +G
Sbjct: 480 ALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKG 539

Query: 459 VLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDM 518
           + K+PG S+ E++N V  F +GD  H  S  + + LD  V ++K  GYVP+T    H D+
Sbjct: 540 IKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVSVGKMKEAGYVPETDSALH-DV 598

Query: 519 EDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           E+E+KE  L  HSEKLAI F +LNT PG+ IR+ KNLRVC
Sbjct: 599 EEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVC 638



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 104/437 (23%), Positives = 204/437 (46%), Gaps = 48/437 (10%)

Query: 26  SLLPRCTSFRGLKQIHA-VTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
            +L +    + LK++H+ + I   L ++ ++  KL+          S  H   +FD IP+
Sbjct: 43  QILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRH---IFDEIPK 99

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
            ++V FN M R Y  +     A+ +F  +   G+ PD Y++P +LKA +  G+E L  G 
Sbjct: 100 KNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASS--GSEDLWVGM 157

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC--VVSYNAIITAYAR 202
           Q+H   +++GL+ N++V   LI++Y +C  +  A R+ + +  PC  VVS+N+++   AR
Sbjct: 158 QIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQM--PCRDVVSWNSLVAGCAR 215

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
           + + ++AL + +E++   LKP   TM S L +                +    LD     
Sbjct: 216 NGQFDDALEVCKEMELLGLKPDAGTMASLLPA----------------VTNTCLD----- 254

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
           N + +              +F  ++ K   +W+ MI  Y  +    +++ +F +M    V
Sbjct: 255 NVSFVK------------EMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAV 302

Query: 323 SPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
            PD I+   +L AC     +  G   + Y +R +  + P +     ++D+  + G L+ A
Sbjct: 303 DPDAISIASVLPACGDLSALLLGRRIHEYVVRKR--LQPNLLLENALIDMYAKCGCLEYA 360

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD-DSHGGDYVILSNLCAR 440
               D++  +   + W +++S+   +     A  +  R+ +L  +     +V + + C+ 
Sbjct: 361 REVFDQMKFRDV-VSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSH 419

Query: 441 AGRWEDVDYLRKLMKDR 457
           AG  ++  Y  KLM + 
Sbjct: 420 AGLLDEGRYYFKLMTEE 436



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 122/277 (44%), Gaps = 51/277 (18%)

Query: 22  PNALSL---LPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           P+A+S+   LP C     L   ++IH   ++  LQ +L +   LI+   +      +E+A
Sbjct: 304 PDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAK---CGCLEYA 360

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
             +FD++   D+V + +M   Y  +     A+ LF  + + GL PD  +F S+L AC+  
Sbjct: 361 REVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHA 420

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
           G   L+EG+    +  KL              +  EC  V            P +  +  
Sbjct: 421 G--LLDEGR----YYFKL--------------MTEECKIV------------PRIEHFVC 448

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
           ++    R+ + +EA    +++    ++P +    + LS+C +  ++ +G    + + +  
Sbjct: 449 MVDLLGRAGQVDEAYGFIKQMP---MEPNERVWGALLSACRVYSNMIIGLLAADQLFQLC 505

Query: 256 LDK---YVKVNTALIDMHAKCGRLDDAVSVFDNMSGK 289
            ++   YV     L +++AK GR +D  +V   M  K
Sbjct: 506 PEQSGYYV----LLSNIYAKAGRWEDVTTVRSIMKTK 538


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 193/509 (37%), Positives = 297/509 (58%), Gaps = 9/509 (1%)

Query: 51  NDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLF 110
           ND+ V + ++N   +     +M+ A  +FDR+ + D V ++TM  G+  +  P++AI ++
Sbjct: 136 NDIFVCSSVLNLYAK---CGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQAIEMY 192

Query: 111 VELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA 170
           + +   GL  D+     +++ACA  G   +  G  +H + ++  +  ++ + T+L+++YA
Sbjct: 193 MRMRRDGLEADEVVIVGVMQACAATGDARM--GASVHGYLLRHAMQMDVVISTSLVDMYA 250

Query: 171 ECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLS 230
           +    + ARR+FE +     VS++A+I+  A+    +EAL LFR +Q   L P    ++ 
Sbjct: 251 KNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALGLFRMMQVSGLHPNSGPVVG 310

Query: 231 ALSSCALLGSLDLGKWIHEYI-KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK 289
           AL +C+ LG L LGK IH +I +   LD+ V   TA+IDM++KCG L  A  +FD +  +
Sbjct: 311 ALLACSDLGLLKLGKSIHGFILRTLELDRMV--GTAVIDMYSKCGSLSSAQMLFDKVVSR 368

Query: 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYF 349
           D  +W+ MI     HG+G  ++ +F+EM + +V PD  TF  LL A SH+GLV+EG  +F
Sbjct: 369 DLISWNVMIACCGAHGRGRDALSLFQEMKRNEVRPDHATFASLLSALSHSGLVEEGKFWF 428

Query: 350 YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
             M ++YGI PG KH  C+VDLL R+G ++EA   +  L  K T  +   LLS C ++N 
Sbjct: 429 NCMVNEYGIEPGEKHLVCIVDLLARSGLVEEANGLVASLHSKPTISILVALLSGCLNNNK 488

Query: 410 LGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIE 469
           L L +   E+I EL     G   ++SNL A A  W  V  +RKLMKD G  K PGCSSIE
Sbjct: 489 LELGESTAEKILELQPGDVGVLALVSNLYAAAKNWYKVREVRKLMKDHGSKKAPGCSSIE 548

Query: 470 VNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRY 529
           +   +  F   D  H     + + + +L  E++ +GY+P T  V+H D+E+  KE  L  
Sbjct: 549 IRGALHTFVMEDQSHPQHRQILQMVMKLDSEMRKMGYIPKTEFVYH-DLEEGVKEQLLSR 607

Query: 530 HSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           HSE+LA  FGLLNT PGT + V+KNLRVC
Sbjct: 608 HSERLATAFGLLNTSPGTRLVVIKNLRVC 636



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 189/387 (48%), Gaps = 16/387 (4%)

Query: 27  LLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPD 86
           LL  C + R L ++HA+ I +   +  ++L+  +          +   + L         
Sbjct: 9   LLSSCAALRTLTRLHALLIVSSSASCHHILSSCLATAYARAGDLAAAESTLATAPTSPSS 68

Query: 87  IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQL 146
           I  +N +   +SR  +P  A+ +F   L     PD  +F   L ACA +G   L  G+ +
Sbjct: 69  IPAWNALLAAHSRGASPHEALRVF-RALPPAARPDSTTFTLALSACARLGD--LATGEVV 125

Query: 147 HCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRP 206
              A   G  ++++VC++++NLYA+C  ++ A ++F+ + +   V+++ ++T +  + +P
Sbjct: 126 TDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQP 185

Query: 207 NEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
            +A+ ++  ++   L+  +V ++  + +CA  G   +G  +H Y+ ++ +   V ++T+L
Sbjct: 186 VQAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVVISTSL 245

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           +DM+AK G  D A  VF+ M  ++  +WSA+I   A +G   +++ +F  M  + + P+ 
Sbjct: 246 VDMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALGLFRMMQVSGLHPNS 305

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV-----DLLGRAGRLDEA 381
              +G L ACS  GL+  G       +  +G +        MV     D+  + G L  A
Sbjct: 306 GPVVGALLACSDLGLLKLG-------KSIHGFILRTLELDRMVGTAVIDMYSKCGSLSSA 358

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHN 408
               D++ +    I W  +++ C +H 
Sbjct: 359 QMLFDKV-VSRDLISWNVMIACCGAHG 384


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 202/547 (36%), Positives = 308/547 (56%), Gaps = 14/547 (2%)

Query: 15  PKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSS 71
           P L T T    S+L  C     L   K +H   I +  + D      LIN   +     +
Sbjct: 314 PDLLTIT----SILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAK---CGN 366

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +  +  +F  +   D V +N+M   Y ++ +   A+ LF +++ + + PD  ++  LL  
Sbjct: 367 LLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSM 425

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
              +G   L  GK+LHC   K+G NSN+ V  TL+++YA+C ++  + ++FEN+    ++
Sbjct: 426 STQLGD--LHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDII 483

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           ++N II +   S   N  L +   ++   + P   TMLS L  C+LL +   GK IH  I
Sbjct: 484 TWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCI 543

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            K GL+  V V   LI+M++KCG L ++  VF  M  KD   W+A+I A   +G+G K++
Sbjct: 544 FKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAV 603

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
             F EM  A + PD + F+ +++ACSH+GLV+EG NYF+ M+  Y I P I+HY C+VDL
Sbjct: 604 RAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDL 663

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
           L R+  LD+A  FI  +P+K    +W  LLS+C    +  +A++V ERI EL+    G Y
Sbjct: 664 LSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYY 723

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           V++SN+ A  G+W+ V  +RK +K RG+ K PGCS +E+ N V  F +G        ++ 
Sbjct: 724 VLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVN 783

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
           K L  L   +   GY+ +   V H   EDE+++I L  HSE+LAI FGLLNT PGT ++V
Sbjct: 784 KLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDI-LCGHSERLAIAFGLLNTKPGTPLQV 842

Query: 552 VKNLRVC 558
           +KNLRVC
Sbjct: 843 MKNLRVC 849



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/413 (29%), Positives = 198/413 (47%), Gaps = 39/413 (9%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLI-NFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMAR 95
           L ++H++ I   L + +    KLI  +      TSS     L     P  ++ L+N++ R
Sbjct: 32  LHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRL---ASPSNNVYLWNSIIR 88

Query: 96  GYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155
             + +     A+ L+ E     L PD Y+FPS++ ACA  G    E  K +H   + +G 
Sbjct: 89  ALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACA--GLLDFEMAKSIHDRVLDMGF 146

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
            S+LY+   LI++Y   +D++ AR++FE +    VVS+N++I+ Y  +   NEAL ++  
Sbjct: 147 GSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYR 206

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
            +   + P   TM S L +C  LGS++ G  IH  I+K G+ K V VN  L+ M+ K   
Sbjct: 207 FRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNG 266

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           L D   +FD M  +D  +W+ MI  Y+  G   +SI +F EM+  Q  PD +T   +L A
Sbjct: 267 LIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVN-QFKPDLLTITSILQA 325

Query: 336 CSHTG-----------LVDEGW-------NYFYSMRDKYG-------IVPGIK-----HY 365
           C H G           ++  G+       N   +M  K G       +  G+K      +
Sbjct: 326 CGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSW 385

Query: 366 GCMVDLLGRAGRLDEAYRFIDELP--IKSTPILWRTLLSSCSSHNNLGLAKQV 416
             M+++  + G  DEA +    +   +K   + +  LLS  +   +L L K++
Sbjct: 386 NSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKEL 438



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 160/327 (48%), Gaps = 10/327 (3%)

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
           F S+ +A A   A    +  +LH   I LGL+ ++     LI  YA   D  ++  +F  
Sbjct: 16  FSSISRALA--SAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFR- 72

Query: 185 ISEPC--VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242
           ++ P   V  +N+II A   +   +EALSL+ E Q   L+P   T  S +++CA L   +
Sbjct: 73  LASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFE 132

Query: 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYA 302
           + K IH+ +   G    + +  ALIDM+ +   LD A  VF+ M  +D  +W+++I  Y 
Sbjct: 133 MAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYN 192

Query: 303 THGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI 362
            +G  ++++ ++       V PD  T   +L AC   G V+EG +  + + +K GI   +
Sbjct: 193 ANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG-DIIHGLIEKIGIKKDV 251

Query: 363 KHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
                ++ +  +   L +  R  D++ ++   + W T++     ++ +GL ++ I+   E
Sbjct: 252 IVNNGLLSMYCKFNGLIDGRRIFDKMVLRD-AVSWNTMI---CGYSQVGLYEESIKLFME 307

Query: 423 LDDSHGGDYVILSNLCARAGRWEDVDY 449
           + +    D + ++++    G   D+++
Sbjct: 308 MVNQFKPDLLTITSILQACGHLGDLEF 334


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 184/545 (33%), Positives = 307/545 (56%), Gaps = 15/545 (2%)

Query: 20  NTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDL---NVLTKLINFCTQNPTTSSME 73
            T +   L+ RC   + L   ++IH       L       N+L  +   C       S+ 
Sbjct: 40  GTGDLEQLIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKC------GSLV 93

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
            A  +FD +   ++  +  +  G+ +S   + AI LF  +   G LPD  +    + +C 
Sbjct: 94  EAKRVFDAMQHKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCG 153

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
              A+AL +G+++H  A   G++S+L     +IN+Y +C  +  A  +F  + E  V+S+
Sbjct: 154 --AAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISW 211

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           + +I A+ ++   +EAL  F+ +Q+  ++   +T +S L +   +G+L+LGK +H  I  
Sbjct: 212 STMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVY 271

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
            GLD  + V   L++M+ KCG  DDA  VFD+M  K+  +W+AM+ AY  +G+  +++ +
Sbjct: 272 AGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQNGRSREALAL 331

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           F+ M    V P++ITF+ +LY CSH+G   +  ++F  MR  +GI P   H+GC++D+LG
Sbjct: 332 FDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVSHFVEMRQDFGITPREVHFGCLIDMLG 391

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI 433
           R+G+L+EA   I  +P+ +  +LW +LL +C +H +   A +  E  F+ +      Y++
Sbjct: 392 RSGKLEEAEELIQAMPVPADAVLWTSLLCACVTHKDEDRAARAAEEAFQREPRCAAAYIM 451

Query: 434 LSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKA 493
           LSNL A   +W++   +RK M+  GV K  G S IE++  V EF +GD +H   + + K 
Sbjct: 452 LSNLYAALKKWDEAAKVRKRMEQAGVRKQAGRSWIEIDKQVHEFVAGDSIHPDKSRIFKT 511

Query: 494 LDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVK 553
           L  L+ E+++ GY PD  +V H  ME+EEK+  L YHSEKLA+ FG+ +TPP T + +VK
Sbjct: 512 LQRLMSEMRIKGYEPDRKVVIH-SMEEEEKDEVLFYHSEKLAVAFGIASTPPRTPLCIVK 570

Query: 554 NLRVC 558
           NLRVC
Sbjct: 571 NLRVC 575



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 183/364 (50%), Gaps = 17/364 (4%)

Query: 104 IRAIFLFVELL-NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVC 162
           + AI   V+LL  SG          L++ CA  GA+ALEEG+++H +     L+   ++ 
Sbjct: 22  VDAIREAVDLLEQSGAAGGTGDLEQLIRRCA--GAKALEEGRRIHRWMDSGTLDRPRFLS 79

Query: 163 TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK 222
             L+++Y +C  +  A+R+F+ +    V S+  ++  + +S R  EA+ LF  + +    
Sbjct: 80  NLLVDMYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGEL 139

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
           P  V +L  + SC    +L  G+ IH      G+D  +    A+I+M+ KCG + +A +V
Sbjct: 140 PDRVALLKFIDSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAV 199

Query: 283 FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342
           F  M  K+  +WS MI A+  +    +++L F+ M +  +  D IT++ +L A +  G +
Sbjct: 200 FTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGAL 259

Query: 343 DEGWNYFYSMRDKY-GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
           + G      +R  Y G+   I     +V++ G+ G  D+A    D + ++   + W  +L
Sbjct: 260 ELG--KALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSM-VEKNVVSWNAML 316

Query: 402 SSCSSHNNLGLAKQVIERIFELDDSHGG-----DYVILSNLCARAGRWED-VDYLRKLMK 455
              +++   G +++ +  +F+  D  G       +V +   C+ +G+++D V +  ++ +
Sbjct: 317 ---AAYGQNGRSREALA-LFDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVSHFVEMRQ 372

Query: 456 DRGV 459
           D G+
Sbjct: 373 DFGI 376


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 192/522 (36%), Positives = 309/522 (59%), Gaps = 8/522 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +++HA  +K  L +DL +   L++   +     S+E +  +FDR+   D V + T+   Y
Sbjct: 385 REVHAYAVKQRLDSDLQIANTLMDMYIK---CYSVECSARVFDRMRIKDHVSWTTIIACY 441

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           ++S     AI  F      G+  D     S+L+AC+  G +++   KQ+H +AI+ GL  
Sbjct: 442 AQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACS--GLKSISLLKQVHSYAIRNGL-L 498

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           +L +   +I++Y EC +V  A  IFE + +  +V++ +++  +A +   +EA++LF ++ 
Sbjct: 499 DLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKML 558

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              ++P  V ++  L + A L SL  GK IH ++ +        V ++L+DM++ CG ++
Sbjct: 559 NAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMN 618

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            A+ VFD    KD   W+AMI A   HG G ++I +F+ M++  VSPD ++FL LLYACS
Sbjct: 619 YALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACS 678

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H+ LVDEG  Y   M  KY + P  +HY C+VDLLGR+G+ +EAY+FI  +P++   ++W
Sbjct: 679 HSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVW 738

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             LL +C  H N  LA    +++ EL+  + G+YV++SN+ A  G+W +V  +R  M ++
Sbjct: 739 CALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQ 798

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVG-YVPDTSLVHHG 516
           G+ K P CS IE+ N V  F + D  H  S  +   L E+ ++L+  G YV DTS V H 
Sbjct: 799 GLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEITEKLRREGQYVEDTSFVLH- 857

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           D+ +EEK   L  HSE+LAI+FGL++T  GT +R+ KNLRVC
Sbjct: 858 DVSEEEKIDLLHRHSERLAISFGLISTASGTPLRIAKNLRVC 899



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 103/399 (25%), Positives = 189/399 (47%), Gaps = 16/399 (4%)

Query: 11  QSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTS 70
           ++PPP    +    L L+    +    +Q+HA  + T    D +                
Sbjct: 50  RAPPPT--DHYGWVLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCG 107

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS----GLLPDDYSFP 126
            +  AH LFD +P   +  +N +      S     A+ ++  +  S    G  PD  +  
Sbjct: 108 RLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLA 167

Query: 127 SLLKACACVGAEALEE-GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
           S+LKAC   GAE     G ++H  A+K GL+ +  V   L+ +YA+C  +++A R+FE +
Sbjct: 168 SVLKAC---GAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWM 224

Query: 186 SEPC-VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
            +   V S+N+ I+   ++    EAL LFR +Q         T +  L  CA L  L+ G
Sbjct: 225 RDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHG 284

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
           + +H  + K G +  ++ N AL+ M+A+CG +D A+ VF  +  KD  +W++M+  Y  +
Sbjct: 285 RELHAALLKCGTEFNIQCN-ALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQN 343

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIK 363
               ++I  F EM++   +PD    + LL A  H G +  G   + Y+++ +  +   ++
Sbjct: 344 RLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQR--LDSDLQ 401

Query: 364 HYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
               ++D+  +   ++ + R  D + IK   + W T+++
Sbjct: 402 IANTLMDMYIKCYSVECSARVFDRMRIKD-HVSWTTIIA 439



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 162/340 (47%), Gaps = 15/340 (4%)

Query: 2   ATTPSPPITQSPPPKLCTNTPNALSLLPRCTS---FRGLKQIHAVTIKTHLQNDLNVLTK 58
           A   S P+  + P   CT      S+L  C +    R   ++H + +K+ L     V   
Sbjct: 149 AMRASEPVAGAAPDG-CTLA----SVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANA 203

Query: 59  LINFCTQNPTTSSMEHAHLLFDRIPEP-DIVLFNTMARGYSRSKTPIRAIFLFVELLNSG 117
           L+    +      ++ A  +F+ + +  D+  +N+   G  ++   + A+ LF  + + G
Sbjct: 204 LVGMYAK---CGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDG 260

Query: 118 LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEA 177
              + Y+   +L+ CA +    L  G++LH   +K G   N+  C  L+ +YA C  V++
Sbjct: 261 FSMNSYTTVGVLQVCAELAQ--LNHGRELHAALLKCGTEFNIQ-CNALLVMYARCGWVDS 317

Query: 178 ARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL 237
           A R+F  I +   +S+N++++ Y ++    EA+  F E+ +    P    ++S LS+   
Sbjct: 318 ALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGH 377

Query: 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297
           LG L  G+ +H Y  K  LD  +++   L+DM+ KC  ++ +  VFD M  KD  +W+ +
Sbjct: 378 LGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTI 437

Query: 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           I  YA   +  ++I  F    K  +  D +    +L ACS
Sbjct: 438 IACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACS 477



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 135/281 (48%), Gaps = 12/281 (4%)

Query: 138 EALEEGKQLHCFAIK---LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
            A+ EG+QLH  A+    LG +   ++ T L+ +Y +C  +  A R+F+ +    V S+N
Sbjct: 69  RAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWN 128

Query: 195 AIITAYARSSRPNEALSLFRELQER----NLKPTDVTMLSALSSCALLGSLDLGKWIHEY 250
           A+I A   S    EA+ ++R ++         P   T+ S L +C   G    G  +H  
Sbjct: 129 ALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGL 188

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM-SGKDTQAWSAMIVAYATHGQGHK 309
             K GLD+   V  AL+ M+AKCG LD A+ VF+ M  G+D  +W++ I     +G   +
Sbjct: 189 AVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLE 248

Query: 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369
           ++ +F  M     S +  T +G+L  C+    ++ G    ++   K G    I+    +V
Sbjct: 249 ALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHG-RELHAALLKCGTEFNIQCNALLV 307

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410
            +  R G +D A R   E+  K   I W ++L SC   N L
Sbjct: 308 -MYARCGWVDSALRVFREIGDKDY-ISWNSML-SCYVQNRL 345


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 197/575 (34%), Positives = 317/575 (55%), Gaps = 33/575 (5%)

Query: 9   ITQSPPPKLCTNT-PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNP 67
           I QSP P L   T  + L L     S +  ++IH++     ++ D  + +KL+       
Sbjct: 91  INQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYV--- 147

Query: 68  TTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP------- 120
           T   +     +FD++    + L+N +  GY++      ++ LF  +   G+         
Sbjct: 148 TCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKL 207

Query: 121 -------DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTT--------L 165
                  D  S+ S++      G    E+G  L    + LG+N++L    +        L
Sbjct: 208 FDELGDRDVISWNSMISGYVSNGLS--EKGLDLFEQMLLLGINTDLATMVSVELTLNNCL 265

Query: 166 INLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTD 225
           +++Y++  ++ +A ++FE + E  VVS+ ++I  YAR    + ++ LF E+++ +L P  
Sbjct: 266 LDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNS 325

Query: 226 VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285
           +TM   L +CA L +L+ G+ IH +I + G      V  AL+DM+ KCG L  A  +FD 
Sbjct: 326 ITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDM 385

Query: 286 MSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
           +  KD  +W+ MI  Y  HG G ++I  F EM  + + PDE++F+ +LYACSH+GL+DEG
Sbjct: 386 IPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEG 445

Query: 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS 405
           W +F  MR+   I P  +HY C+VDLL RAG L +AY+FI  +PI+    +W  LL  C 
Sbjct: 446 WGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCR 505

Query: 406 SHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGC 465
            ++++ LA++V E +FEL+  + G YV+L+N+ A A +WE+V  LR+ +  RG+ K PGC
Sbjct: 506 IYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGC 565

Query: 466 SSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT--SLVHHGDMEDEEK 523
           S IE+   V  F +GD  H  +  ++  L +    +K  G+ P    +L+     +D EK
Sbjct: 566 SWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALI---KADDTEK 622

Query: 524 EIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           E+AL  HSEK+A+ FG+L+ PPG T+RV KNLRVC
Sbjct: 623 EMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVC 657


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 202/547 (36%), Positives = 308/547 (56%), Gaps = 14/547 (2%)

Query: 15  PKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSS 71
           P L T T    S+L  C     L   K +H   I +  + D      LIN   +     +
Sbjct: 373 PDLLTIT----SILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAK---CGN 425

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +  +  +F  +   D V +N+M   Y ++ +   A+ LF +++ + + PD  ++  LL  
Sbjct: 426 LLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSM 484

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
              +G   L  GK+LHC   K+G NSN+ V  TL+++YA+C ++  + ++FEN+    ++
Sbjct: 485 STQLGDLXL--GKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDII 542

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           ++N II +   S   N  L +   ++   + P   TMLS L  C+LL +   GK IH  I
Sbjct: 543 TWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCI 602

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            K GL+  V V   LI+M++KCG L ++  VF  M  KD   W+A+I A   +G+G K++
Sbjct: 603 FKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAV 662

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
             F EM  A + PD + F+ +++ACSH+GLV+EG NYF+ M+  Y I P I+HY C+VDL
Sbjct: 663 RAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDL 722

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
           L R+  LD+A  FI  +P+K    +W  LLS+C    +  +A++V ERI EL+    G Y
Sbjct: 723 LSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYY 782

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           V++SN+ A  G+W+ V  +RK +K RG+ K PGCS +E+ N V  F +G        ++ 
Sbjct: 783 VLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEVN 842

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
           K L  L   +   GY+ +   V H   EDE+++I L  HSE+LAI FGLLNT PGT ++V
Sbjct: 843 KLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDI-LCGHSERLAIAFGLLNTKPGTPLQV 901

Query: 552 VKNLRVC 558
           +KNLRVC
Sbjct: 902 MKNLRVC 908



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 119/413 (28%), Positives = 197/413 (47%), Gaps = 39/413 (9%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLI-NFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMAR 95
           L ++H++ I   L + +    KLI  +      TSS     L     P  ++  +N++ R
Sbjct: 91  LHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRL---ASPSNNVYXWNSIIR 147

Query: 96  GYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155
             + +     A+ L+ E     L PD Y+FPS++ ACA  G    E  K +H   + +G 
Sbjct: 148 ALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACA--GLLDFEMAKSIHDRVLXMGF 205

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
            S+LY+   LI++Y   +D++ AR++FE +    VVS+N++I+ Y  +   NEAL ++  
Sbjct: 206 GSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYR 265

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
            +   + P   TM S L +C  LGS++ G  IH  I+K G+ K V VN  L+ M+ K   
Sbjct: 266 FRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNG 325

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           L D   +FD M  +D  +W+ MI  Y+  G   +SI +F EM+  Q  PD +T   +L A
Sbjct: 326 LIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVN-QFKPDLLTITSILQA 384

Query: 336 CSHTG-----------LVDEGW-------NYFYSMRDKYG-------IVPGIK-----HY 365
           C H G           ++  G+       N   +M  K G       +  G+K      +
Sbjct: 385 CGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSW 444

Query: 366 GCMVDLLGRAGRLDEAYRFIDELP--IKSTPILWRTLLSSCSSHNNLGLAKQV 416
             M+++  + G  DEA +    +   +K   + +  LLS  +   +L L K++
Sbjct: 445 NSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKEL 497



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 160/327 (48%), Gaps = 10/327 (3%)

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
           F S+ +A A   A    +  +LH   I LGL+ ++     LI  YA   D  ++  +F  
Sbjct: 75  FSSISRALA--SAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFR- 131

Query: 185 ISEPC--VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242
           ++ P   V  +N+II A   +   +EALSL+ E Q   L+P   T  S +++CA L   +
Sbjct: 132 LASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFE 191

Query: 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYA 302
           + K IH+ +   G    + +  ALIDM+ +   LD A  VF+ M  +D  +W+++I  Y 
Sbjct: 192 MAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYN 251

Query: 303 THGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI 362
            +G  ++++ ++       V PD  T   +L AC   G V+EG +  + + +K GI   +
Sbjct: 252 ANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG-DIIHGLIEKIGIKKDV 310

Query: 363 KHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
                ++ +  +   L +  R  D++ ++   + W T++     ++ +GL ++ I+   E
Sbjct: 311 IVNNGLLSMYCKFNGLIDGRRIFDKMVLRD-AVSWNTMI---CGYSQVGLYEESIKLFME 366

Query: 423 LDDSHGGDYVILSNLCARAGRWEDVDY 449
           + +    D + ++++    G   D+++
Sbjct: 367 MVNQFKPDLLTITSILQACGHLGDLEF 393


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  347 bits (890), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 193/550 (35%), Positives = 312/550 (56%), Gaps = 37/550 (6%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           IHA   K   +++  V T LI+          ++ A  +FD I   D+V +  M   ++ 
Sbjct: 161 IHACIFKLGHESNAFVGTALID---AYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAE 217

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
           +     A+ LF ++   G  P++++F S+ KAC  +G EA + GK +H  A+K     +L
Sbjct: 218 NDCFKEALKLFSQMRMVGFKPNNFTFASVFKAC--LGLEAFDVGKSVHGCALKSRYELDL 275

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER 219
           YV   L++LY +  D++ ARR FE I +  V+ ++ +I  YA+S +  EA+ +F ++++ 
Sbjct: 276 YVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQA 335

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
            + P   T  S L +CA +  L+LG  IH ++ K GL   V V+ AL+D++AKCGR++++
Sbjct: 336 LVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENS 395

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS---------------- 323
           + +F     ++   W+ +IV +   G G K++ +F  M++ +V                 
Sbjct: 396 MELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASL 455

Query: 324 ---------------PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
                          PD++TF+G+L AC++ GL+D+G  YF SM   +GI P I+HY CM
Sbjct: 456 AALEPGLQIHSLTVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCM 515

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428
           V LLGR G LD+A + IDE+P + + ++WR LL +C  HN++ L +   +R+ E++    
Sbjct: 516 VWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDK 575

Query: 429 GDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYST 488
             +V+LSN+ A A RW++V  +RK MK +GV K PG S IE    V  F  GD  H    
Sbjct: 576 ATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVR 635

Query: 489 DLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTT 548
            +   L+ L  + K  GY+P+ ++V   D+EDEEKE  L  HSE+LA++FG++ TP G+ 
Sbjct: 636 VINGMLEWLHMKTKKAGYIPNYNVVLL-DVEDEEKERLLWVHSERLALSFGIIRTPSGSP 694

Query: 549 IRVVKNLRVC 558
           IR++KNLR+C
Sbjct: 695 IRIMKNLRIC 704



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/349 (31%), Positives = 181/349 (51%), Gaps = 12/349 (3%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  LFD +PE + + F T+ +GY+ S   + AI LFV L   G   + + F ++LK    
Sbjct: 92  ASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLL-- 149

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           V  +  E G  +H    KLG  SN +V T LI+ Y+ C  V+ AR +F+ I    +VS+ 
Sbjct: 150 VSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWT 209

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH--EYIK 252
            ++T +A +    EAL LF +++    KP + T  S   +C  L + D+GK +H      
Sbjct: 210 GMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKS 269

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
           +Y LD YV V  AL+D++ K G +DDA   F+ +  KD   WS MI  YA   Q  +++ 
Sbjct: 270 RYELDLYVGV--ALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVE 327

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           MF +M +A V P++ TF  +L AC+    ++ G N  +    K G+   +     ++D+ 
Sbjct: 328 MFFQMRQALVLPNQFTFASVLQACATMEGLNLG-NQIHCHVIKIGLHSDVFVSNALMDVY 386

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421
            + GR++ +     E P ++  + W T++     H  LG  ++ + R+F
Sbjct: 387 AKCGRMENSMELFAESPHRN-DVTWNTVI---VGHVQLGDGEKAL-RLF 430



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 143/295 (48%), Gaps = 15/295 (5%)

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
           C+  +    GK LHC  +K G   +L+    L+N+Y +   +  A ++F+ + E   +S+
Sbjct: 48  CIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISF 107

Query: 194 NAIITAYARSSRPNEALSLFRELQERN--LKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
             +I  YA S R  EA+ LF  L      L P   T +  L      G L  G  IH  I
Sbjct: 108 VTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDCGELGWG--IHACI 165

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            K G +    V TALID ++ CGR+D A  VFD +  KD  +W+ M+  +A +    +++
Sbjct: 166 FKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEAL 225

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKY--GIVPGIKHYGCM 368
            +F +M      P+  TF  +  AC      D G + +  +++ +Y   +  G+     +
Sbjct: 226 KLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVA----L 281

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
           +DL  ++G +D+A R  +E+P K   I W  +++  +  +    +K+ +E  F++
Sbjct: 282 LDLYTKSGDIDDARRAFEEIP-KKDVIPWSFMIARYAQSDQ---SKEAVEMFFQM 332


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  347 bits (890), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 194/557 (34%), Positives = 307/557 (55%), Gaps = 42/557 (7%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           ++IHA  +     +DL V T LIN   +     S   A  +FD++ + D+V +N M   Y
Sbjct: 227 RKIHAEIVANGFDSDLVVATALINMYGK---CGSSHEAREVFDKMKKRDMVSWNVMIGCY 283

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            ++     A+ L+ +L   G      +F S+L AC+ V  +AL +G+ +H   ++ GL+S
Sbjct: 284 VQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSV--KALAQGRLVHSHILERGLDS 341

Query: 158 NLYVCTTLINLYAECS----------------------------------DVEAARRIFE 183
            + V T L+N+YA+C                                   D   AR++F+
Sbjct: 342 EVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFD 401

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQ-ERNLKPTDVTMLSALSSCALLGSLD 242
            +     + +NA+IT Y ++     A+ +FRE+     LKP  VT ++ L +CA LG L 
Sbjct: 402 RLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLS 461

Query: 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYA 302
             K +H  I +  L+  V V   LI+M+A+CG L++A  +F     K   +W+AM+ A++
Sbjct: 462 EVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFS 521

Query: 303 THGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI 362
            +G+  +++ +F+EM    V PD++T+  +L+ C+H G +++GW YF  M + +G+ P  
Sbjct: 522 QYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTA 581

Query: 363 KHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
            H+  MVDLLGR+GRL +A   ++ +P +  P+ W T L++C  H  L L +   ER++E
Sbjct: 582 DHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYE 641

Query: 423 LDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDG 482
           LD S    Y+ +SN+ A  G WE V  +RK M++RG+ K+PG S IEV+  + EF SG  
Sbjct: 642 LDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGK 701

Query: 483 VHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLN 542
            H  + ++ + L  L   ++  GYVPDT  V H D+ + EKE  L YHSEK+AI FGL++
Sbjct: 702 YHPRTDEICEELTRLHGLMRAAGYVPDTKAVLH-DVSEGEKETMLLYHSEKMAIAFGLVS 760

Query: 543 T-PPGTTIRVVKNLRVC 558
           +   G  IRVVKNLRVC
Sbjct: 761 SRGSGEPIRVVKNLRVC 777



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 112/439 (25%), Positives = 209/439 (47%), Gaps = 43/439 (9%)

Query: 17  LCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           L T+    +S+L  C+S    ++IH     + L +  ++   L+   T      S+  A 
Sbjct: 106 LGTDHVTFVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALV---TMYARFGSVGDAK 162

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +F  +   D   +N +   +S+S     A+ +F E+    + P+  ++ +++   +   
Sbjct: 163 RMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM-KCDMKPNSTTYINVISGFST-- 219

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
            E L EG+++H   +  G +S+L V T LIN+Y +C     AR +F+ + +  +VS+N +
Sbjct: 220 PEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVM 279

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           I  Y ++   +EAL L+++L     K T  T +S L +C+ + +L  G+ +H +I + GL
Sbjct: 280 IGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGL 339

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH-------- 308
           D  V V TAL++M+AKCG L++A  VF+ M  +D  AWS +I AYA++G G         
Sbjct: 340 DSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKV 399

Query: 309 --------------------------KSILMFEEMMKAQ-VSPDEITFLGLLYACSHTGL 341
                                      ++ +F EM  A  + PD +TF+ +L AC+  G 
Sbjct: 400 FDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGR 459

Query: 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
           + E     ++   +  +   +     ++++  R G L+EA R       K T + W  ++
Sbjct: 460 LSEV-KALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEK-TVVSWTAMV 517

Query: 402 SSCSSHNNLGLAKQVIERI 420
           ++ S +     A  + + +
Sbjct: 518 AAFSQYGRYAEALDLFQEM 536



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 176/339 (51%), Gaps = 9/339 (2%)

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
           + ++V +N M   Y+++     A+ L+  +   GL  D  +F S+L AC+     +L +G
Sbjct: 72  QRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS-----SLAQG 126

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
           +++H      GL+S   +   L+ +YA    V  A+R+F+++      S+NA+I A+++S
Sbjct: 127 REIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQS 186

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
              + AL +F+E++  ++KP   T ++ +S  +    L  G+ IH  I   G D  + V 
Sbjct: 187 GDWSGALRIFKEMK-CDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVA 245

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
           TALI+M+ KCG   +A  VFD M  +D  +W+ MI  Y  +G  H+++ +++++      
Sbjct: 246 TALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFK 305

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
             + TF+ +L ACS    + +G    +S   + G+   +     +V++  + G L+EA +
Sbjct: 306 RTKATFVSILGACSSVKALAQG-RLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARK 364

Query: 384 FIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
             + +  +   + W TL+ + +S N  G   +   ++F+
Sbjct: 365 VFNAMKNRD-AVAWSTLIGAYAS-NGYGKDARKARKVFD 401



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 175/374 (46%), Gaps = 42/374 (11%)

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179
           PD+ +F ++L  C+C     + EG+ LH          +  V   LI++Y +C  +  AR
Sbjct: 5   PDNVTFLTVL--CSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDAR 62

Query: 180 RIFENIS--EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL 237
            +FE++   +  VVS+NA+I AYA++    EAL L+  +  + L    VT +S L +C+ 
Sbjct: 63  SVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS- 121

Query: 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297
             SL  G+ IH  +   GLD +  +  AL+ M+A+ G + DA  +F ++  +D  +W+A+
Sbjct: 122 --SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAV 179

Query: 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS-----------HTGLVDEGW 346
           I+A++  G    ++ +F+E MK  + P+  T++ ++   S           H  +V  G+
Sbjct: 180 ILAHSQSGDWSGALRIFKE-MKCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGF 238

Query: 347 N-------YFYSMRDKYG-------IVPGIKH-----YGCMVDLLGRAGRLDEA---YRF 384
           +          +M  K G       +   +K      +  M+    + G   EA   Y+ 
Sbjct: 239 DSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQK 298

Query: 385 IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD-DSHGGDYVILSNLCARAGR 443
           +D    K T   + ++L +CSS   L   + V   I E   DS       L N+ A+ G 
Sbjct: 299 LDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGS 358

Query: 444 WEDVDYLRKLMKDR 457
            E+   +   MK+R
Sbjct: 359 LEEARKVFNAMKNR 372



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 8/173 (4%)

Query: 222 KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVS 281
           +P +VT L+ L SC+  G +  G+ +HE I+    ++   V  ALI M+ KC  L DA S
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 282 VFDNMS--GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
           VF++M    ++  +W+AMI AYA +G   ++++++  M    +  D +TF+ +L ACS  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 340 GLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIK 391
               E  N  FYS  D +  +        +V +  R G + +A R    L  +
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLA-----NALVTMYARFGSVGDAKRMFQSLQTR 171


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  347 bits (890), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 195/557 (35%), Positives = 305/557 (54%), Gaps = 47/557 (8%)

Query: 39   QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
            Q+    I+   ++ ++V   LI+  +   + SS+E A  +FD + E DI+ +N M   Y+
Sbjct: 497  QVLGHIIQYGFEDSVSVANSLISMFS---SFSSVEEACYVFDHMNECDIISWNAMISAYA 553

Query: 99   RS---KTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155
                 +  +R       L N     +  S         C   + L+ G+ +H   +KLGL
Sbjct: 554  HHGLCRESLRCFHWMRHLHN-----ETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGL 608

Query: 156  NSNLYVCTTLINLYAECSDVEAARRIFENISE---------------------------- 187
            +SN+ +C TL+ LY+E    E A  +F+ ++E                            
Sbjct: 609  DSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAE 668

Query: 188  ------PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSL 241
                  P  V++NA+I  +A +  PNEA+  ++ ++E+ +    +TM+S L++ A L  L
Sbjct: 669  LLQMGKPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVS-LAATANLAVL 727

Query: 242  DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
            + G+ +H  + K G +  + V  A +DM+ KCG + D + +      +   +W+ +I A+
Sbjct: 728  EEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAF 787

Query: 302  ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG 361
            A HG   K+   F EM+K    PD +TF+ LL AC+H GLVDEG  Y+ SM  ++G+ PG
Sbjct: 788  ARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPG 847

Query: 362  IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421
            I+H  C++DLLGR+GRL  A  FI E+P+    + WR+LL++C  H NL LA++  E + 
Sbjct: 848  IEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLL 907

Query: 422  ELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGD 481
            ELD S    YV+ SN+CA +G+WEDV+ LRK M    + K P CS +++ + V  F  G+
Sbjct: 908  ELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGE 967

Query: 482  GVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLL 541
              H  ++ +   L EL+K  K  GYVPDTS   H DM++E+KE  L  HSE+LA+ FGL+
Sbjct: 968  KYHPQASRISAKLGELMKMTKEAGYVPDTSFALH-DMDEEQKEYNLWNHSERLALAFGLI 1026

Query: 542  NTPPGTTIRVVKNLRVC 558
            NTP  +T+R+ KNLRVC
Sbjct: 1027 NTPESSTLRIFKNLRVC 1043



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 134/246 (54%), Gaps = 1/246 (0%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           M HA  +FD +   +   ++TM  GY R      A+ LF ++   G+ P+ +   SL+ A
Sbjct: 324 MAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITA 383

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C+  G  A +EG Q+H F +K G+  ++YV T L++ Y     V  A+++FE + +  VV
Sbjct: 384 CSRSGYMA-DEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVV 442

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+ +++  Y+ S  P E L++++ +++  +     T  +  SSC LL    LG  +  +I
Sbjct: 443 SWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHI 502

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            +YG +  V V  +LI M +    +++A  VFD+M+  D  +W+AMI AYA HG   +S+
Sbjct: 503 IQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESL 562

Query: 312 LMFEEM 317
             F  M
Sbjct: 563 RCFHWM 568



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/419 (22%), Positives = 200/419 (47%), Gaps = 42/419 (10%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           Q+H   +KT +  D+ V T L++F     +   + +A  LF+ +P+ ++V + ++  GYS
Sbjct: 396 QVHGFVVKTGILGDVYVGTALVHF---YGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYS 452

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
            S  P   + ++  +   G+  +  +F ++  +C  +  + L  G Q+    I+ G   +
Sbjct: 453 DSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVL--GYQVLGHIIQYGFEDS 510

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
           + V  +LI++++  S VE A  +F++++E  ++S+NA+I+AYA      E+L  F  ++ 
Sbjct: 511 VSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRH 570

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
            + +    T+ S LS C+ + +L  G+ IH  + K GLD  V +   L+ ++++ GR +D
Sbjct: 571 LHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSED 630

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL------ 332
           A  VF  M+ +D  +W++M+  Y   G+    + +  E+++    PD +T+  L      
Sbjct: 631 AELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMG-KPDRVTWNALIGGHAE 689

Query: 333 ----------------------------LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364
                                       L A ++  +++EG    + +  K G    +  
Sbjct: 690 NEEPNEAVKAYKLIREKGIPANYITMVSLAATANLAVLEEG-QQLHGLVIKLGFESDLHV 748

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
               +D+ G+ G + +  + + + PI  + + W  L+S+ + H     A++    + +L
Sbjct: 749 TNAAMDMYGKCGEMHDVLKMLPQ-PINRSRLSWNILISAFARHGCFQKARETFHEMLKL 806



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 112/480 (23%), Positives = 184/480 (38%), Gaps = 130/480 (27%)

Query: 25  LSLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           L +L  C   +  KQ   IH   I     +DL++ TKLI F  +      +  A  +FD 
Sbjct: 34  LKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVK---VGDVIAARNVFDG 90

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +PE  +V +  M  GYS++    +A  LF ++                            
Sbjct: 91  MPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMR--------------------------- 123

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
                HC     G+ +N      L++ +++C  +E A  +F  + E  VVS+NA+I  YA
Sbjct: 124 -----HC-----GVKAN----HALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYA 169

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG------ 255
                +++  +FR +    L P   T+ S L + A  G L +   IH  I + G      
Sbjct: 170 VQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDI 229

Query: 256 -----LDKYVK------------------------------------VNTALIDMHAKCG 274
                ++ Y K                                    +  ALIDM+AK G
Sbjct: 230 VTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSG 289

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH-------------------------- 308
            ++DA   FD M  K+  +W+++I  YA HG GH                          
Sbjct: 290 EIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGY 349

Query: 309 -------KSILMFEEMMKAQVSPDEITFLGLLYACSHTG-LVDEGWNYFYSMRDKYGIVP 360
                  +++ +F +M    V P+      L+ ACS +G + DEG+   +    K GI+ 
Sbjct: 350 VRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQ-VHGFVVKTGILG 408

Query: 361 GIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
            +     +V   G  G +  A +  +E+P  +  + W +L+   S   N G    V +R+
Sbjct: 409 DVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNV-VSWTSLMVGYSDSGNPGEVLNVYQRM 467


>gi|302804779|ref|XP_002984141.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
 gi|300147990|gb|EFJ14651.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
          Length = 487

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 183/450 (40%), Positives = 270/450 (60%), Gaps = 7/450 (1%)

Query: 113 LLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172
           +   G+LPD   F + L AC    A+ L  GK +H   ++ GL SN  V T L+N+Y + 
Sbjct: 1   MQQEGVLPDKICFVATLNACGGALAD-LRLGKLIHSCVLEAGLESNTVVATALVNMYGKA 59

Query: 173 SDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNL---KPTDVTML 229
             ++ A R+F  +    +VS+ A+++AY+R     EAL LFRE+    L   KP      
Sbjct: 60  GCLDEATRVFRGLGRKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFA 119

Query: 230 SALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV-NTALIDMHAKCGRLDDAVSVFDNMSG 288
             L +CA L +   G+  H  I++ G D    V    +I+M+ KCG L  A  VFD MS 
Sbjct: 120 FLLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSE 179

Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNY 348
           +DT AW+ +I  YA HG   +S+LMF  M +    PD ++ L +L  CSH GLV++GW++
Sbjct: 180 RDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDF 239

Query: 349 FYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408
           F  +  ++G+ PG KHYGCM+DLLGR+G L+ A   I  +P ++T + W   L++C  H+
Sbjct: 240 FLDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACKVHS 299

Query: 409 NLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSI 468
           +    K+  E++ EL+      YV LSN+ A AG W+ VD +R  MK  G+ K PG SSI
Sbjct: 300 DTERGKRAAEKVLELEPVPAA-YVSLSNIYAAAGEWDQVDRVRSAMKAMGLQKDPGRSSI 358

Query: 469 EVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALR 528
           EVN+ V EF++GD  H  + ++   L+ L ++++  GYVPDT LV   ++ +E+KE  L 
Sbjct: 359 EVNSRVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVPDTKLVLL-NVSEEQKERLLC 417

Query: 529 YHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +HSEKLAI FGLL+TP G+++R++KNLRVC
Sbjct: 418 FHSEKLAIAFGLLSTPAGSSLRIIKNLRVC 447



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 155/331 (46%), Gaps = 14/331 (4%)

Query: 14  PPKLC-TNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSM 72
           P K+C   T NA          R  K IH+  ++  L+++  V T L+N   +      +
Sbjct: 8   PDKICFVATLNACG--GALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGK---AGCL 62

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL---LPDDYSFPSLL 129
           + A  +F  +   D+V +  +   YSR      A+ LF E+   GL    PD   F  LL
Sbjct: 63  DEATRVFRGLGRKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAFLL 122

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCT-TLINLYAECSDVEAARRIFENISEP 188
           +ACA + A A  EG+  H    + G +S+  V    +IN+Y +C ++ AA  +F+ +SE 
Sbjct: 123 QACATLSAAA--EGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSER 180

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWI 247
             V++  II+ YA      E+L +F  +Q+   KP  V++L  LS C+  G ++ G  + 
Sbjct: 181 DTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFF 240

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA-WSAMIVAYATHGQ 306
            +  K++G++   K    +ID+  + G L+ A  +   M  + T   W+  + A   H  
Sbjct: 241 LDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACKVHSD 300

Query: 307 GHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
             +     E++++ +  P     L  +YA +
Sbjct: 301 TERGKRAAEKVLELEPVPAAYVSLSNIYAAA 331



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 76/198 (38%), Gaps = 20/198 (10%)

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
            ++  AH +FD + E D V + T+  GY+       ++ +F  +   G  PD  S   +L
Sbjct: 165 GNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVL 224

Query: 130 KACACVGAEALEEGKQLHC-----FAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
             C+  G   +E+G          F ++ G     Y C  +I+L     D+EAA  +   
Sbjct: 225 SVCSHAG--LVEQGWDFFLDITKEFGVEPG--EKHYGC--MIDLLGRSGDLEAAEVMIRR 278

Query: 185 ISEPCVVSYNAIITA----YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
           +         AI  A    ++ + R   A     EL+     P     +S  +  A  G 
Sbjct: 279 MPFQATAMNWAIFLAACKVHSDTERGKRAAEKVLELE-----PVPAAYVSLSNIYAAAGE 333

Query: 241 LDLGKWIHEYIKKYGLDK 258
            D    +   +K  GL K
Sbjct: 334 WDQVDRVRSAMKAMGLQK 351


>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 553

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 193/532 (36%), Positives = 297/532 (55%), Gaps = 48/532 (9%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
            SLL  C + + LKQIH   I         +L KL++F     T+ ++ +AH +F+RI  
Sbjct: 22  FSLLQTCDTIKKLKQIHTQIIVNGFSQKNFLLVKLLSFYI---TSGNLLNAHKVFERIEN 78

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
           P   ++N M RG+S+S+TP + + L+  ++ +   P+++++  L+  CA   +  L EG+
Sbjct: 79  PSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCA--RSRLLREGE 136

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYA---------------------------------- 170
           Q+H   +  G  +N++V T+L+NLYA                                  
Sbjct: 137 QVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYV 196

Query: 171 ECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLS 230
            C DV+ ARRIF+ + E  VVS+  +I   A+  R  +AL LF E++   +K   V +++
Sbjct: 197 RCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVA 256

Query: 231 ALSSCALLGSLDLGKWIHEYIKKY----GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
           ALS+CA LG L LG WIH YI +          V +N +LI M+A CG +D A  VF  M
Sbjct: 257 ALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGM 316

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA---QVSPDEITFLGLLYACSHTGLVD 343
             + T +W++MI  +A  G   +++ +F+ M +    +  PD ITF+G+L ACSH G VD
Sbjct: 317 QQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVD 376

Query: 344 EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
           +G ++F  M  K+GIVP I+HYGCMVDLL RAG LDEA+R I+ +P+K    +W  LL  
Sbjct: 377 QGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGG 436

Query: 404 CSSHNNLGLAKQVIERI-FELD-DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLK 461
           C  H N  LA  V +++  EL  D   G  V+LSN+ A A RW+DV  +R+ M + GV K
Sbjct: 437 CRIHKNAELASHVAQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRK 496

Query: 462 VPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLV 513
             G S +++N VV +F +GD  H +++ + + L ++ ++ K+ GY  D S V
Sbjct: 497 PAGRSWVQINGVVHDFVAGDWTHKHASSVYEMLSKITRQAKLEGYKLDISEV 548


>gi|302780908|ref|XP_002972228.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
 gi|300159695|gb|EFJ26314.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
          Length = 487

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 183/450 (40%), Positives = 270/450 (60%), Gaps = 7/450 (1%)

Query: 113 LLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172
           +   G+LPD   F + L AC    A+ L  GK +H   ++ GL SN  V T L+N+Y + 
Sbjct: 1   MQQEGVLPDKICFVATLNACGGALAD-LRLGKLIHSCVLEAGLESNTVVATALVNMYGKA 59

Query: 173 SDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNL---KPTDVTML 229
             ++ A R+F  +    +VS+ A+++AY+R     EAL LFRE+    L   KP      
Sbjct: 60  GCLDEATRVFRGLERKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFA 119

Query: 230 SALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV-NTALIDMHAKCGRLDDAVSVFDNMSG 288
             L +CA L +   G+  H  I++ G D    V    +I+M+ KCG L  A  VFD MS 
Sbjct: 120 FLLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSE 179

Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNY 348
           +DT AW+ +I  YA HG   +S+LMF  M +    PD ++ L +L  CSH GLV++GW++
Sbjct: 180 RDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDF 239

Query: 349 FYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408
           F  +  ++G+ PG KHYGCM+DLLGR+G L+ A   I  +P ++T + W   L++C  H+
Sbjct: 240 FLDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACKVHS 299

Query: 409 NLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSI 468
           +    K+  E++ EL+      YV LSN+ A AG W+ VD +R  MK  G+ K PG SSI
Sbjct: 300 DTERGKRAAEKVLELEPVPAA-YVSLSNIYAAAGEWDQVDRVRSAMKAMGLQKDPGRSSI 358

Query: 469 EVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALR 528
           EVN+ V EF++GD  H  + ++   L+ L ++++  GYVPDT LV   ++ +E+KE  L 
Sbjct: 359 EVNSRVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVPDTKLVLL-NVSEEQKERLLC 417

Query: 529 YHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +HSEKLAI FGLL+TP G+++R++KNLRVC
Sbjct: 418 FHSEKLAIAFGLLSTPAGSSLRIIKNLRVC 447



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 155/331 (46%), Gaps = 14/331 (4%)

Query: 14  PPKLC-TNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSM 72
           P K+C   T NA          R  K IH+  ++  L+++  V T L+N   +      +
Sbjct: 8   PDKICFVATLNACG--GALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGK---AGCL 62

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL---LPDDYSFPSLL 129
           + A  +F  +   D+V +  +   YSR      A+ LF E+   GL    PD   F  LL
Sbjct: 63  DEATRVFRGLERKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAFLL 122

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCT-TLINLYAECSDVEAARRIFENISEP 188
           +ACA + A A  EG+  H    + G +S+  V    +IN+Y +C ++ AA  +F+ +SE 
Sbjct: 123 QACATLSAAA--EGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSER 180

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWI 247
             V++  II+ YA      E+L +F  +Q+   KP  V++L  LS C+  G ++ G  + 
Sbjct: 181 DTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFF 240

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA-WSAMIVAYATHGQ 306
            +  K++G++   K    +ID+  + G L+ A  +   M  + T   W+  + A   H  
Sbjct: 241 LDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACKVHSD 300

Query: 307 GHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
             +     E++++ +  P     L  +YA +
Sbjct: 301 TERGKRAAEKVLELEPVPAAYVSLSNIYAAA 331



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 76/198 (38%), Gaps = 20/198 (10%)

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
            ++  AH +FD + E D V + T+  GY+       ++ +F  +   G  PD  S   +L
Sbjct: 165 GNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVL 224

Query: 130 KACACVGAEALEEGKQLHC-----FAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
             C+  G   +E+G          F ++ G     Y C  +I+L     D+EAA  +   
Sbjct: 225 SVCSHAG--LVEQGWDFFLDITKEFGVEPG--EKHYGC--MIDLLGRSGDLEAAEVMIRR 278

Query: 185 ISEPCVVSYNAIITA----YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
           +         AI  A    ++ + R   A     EL+     P     +S  +  A  G 
Sbjct: 279 MPFQATAMNWAIFLAACKVHSDTERGKRAAEKVLELE-----PVPAAYVSLSNIYAAAGE 333

Query: 241 LDLGKWIHEYIKKYGLDK 258
            D    +   +K  GL K
Sbjct: 334 WDQVDRVRSAMKAMGLQK 351


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 190/553 (34%), Positives = 304/553 (54%), Gaps = 9/553 (1%)

Query: 9   ITQSPPPKLCTNTPNALSLLPRCT---SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQ 65
           + Q     L  N     S+L  C    +F   +QIH   +K +  +D  +   L++   +
Sbjct: 291 LLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAK 350

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSF 125
           +     ++ A  +FD IP+ D+VL+N +  G S       A+ LF  +   G   +  + 
Sbjct: 351 HGL---LDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTL 407

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
            ++LK+ A +  EA+ + +Q+H  A KLG  S+ +V   LI+ Y +C  +  A R+FE  
Sbjct: 408 AAVLKSTASL--EAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKH 465

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245
               ++++ ++ITA ++     +A+ LF E+  + L P    + S L++CA L + + GK
Sbjct: 466 GSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGK 525

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
            +H ++ K      V    AL+  +AKCG ++DA   F  +  K   +WSAMI   A HG
Sbjct: 526 QVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHG 585

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY 365
            G +++ +F  M+   +SP+ IT   +L AC+H GLVDE   YF SM++ +GI    +HY
Sbjct: 586 HGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHY 645

Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
            CM+DLLGRAG+LD+A   ++ +P ++   +W  LL++   H +  L +   E++F L+ 
Sbjct: 646 ACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEP 705

Query: 426 SHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHS 485
              G +V+L+N  A AG W+DV  +RKLMKD  V K P  S +E+ + V  F  GD  H 
Sbjct: 706 EKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHTFIVGDKSHP 765

Query: 486 YSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPP 545
            + D+   LDEL   +   GYVP+  +  H D++  EKE+ L +HSE+LA+ F L++TP 
Sbjct: 766 RARDIYAKLDELGDLMTKAGYVPNVEVDLH-DVDKNEKELLLSHHSERLAVAFALISTPA 824

Query: 546 GTTIRVVKNLRVC 558
           G  IRV KNLR+C
Sbjct: 825 GAPIRVKKNLRIC 837



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 125/477 (26%), Positives = 221/477 (46%), Gaps = 51/477 (10%)

Query: 25  LSLLPRCTSFRGL-KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           L ++ +C    G   Q+HA+ + T L  D+ V   L+           ++ A ++FD   
Sbjct: 106 LPVVLKCAPDAGFGTQLHALAMATGLGGDIFVANALV---AMYGGFGFVDEARMVFDEAG 162

Query: 84  -EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
            E + V +N +   Y ++     A+ +F E++  G+ P+++ F  ++ AC   G+  LE 
Sbjct: 163 CERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNAC--TGSRDLEA 220

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G+++H   I+ G + +++    L+++Y++  D+  A  +F  + E  VVS+NA I+    
Sbjct: 221 GRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVL 280

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
                 AL L  +++   L P   T+ S L +CA  G+ +LG+ IH ++ K   D    +
Sbjct: 281 HGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYI 340

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL-MFEEMMKAQ 321
              L+DM+AK G LDDA  VFD +  +D   W+A+I    +HG  H   L +F  M K  
Sbjct: 341 AFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISG-CSHGAQHAEALSLFCRMRKEG 399

Query: 322 VSPDEITFLGLLYAC------------------------SHT--GLVDEGW-----NYFY 350
              +  T   +L +                         SH   GL+D  W     NY Y
Sbjct: 400 FDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAY 459

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS---TPILWRTLLSSCSSH 407
            + +K+G    I  +  M+  L +    ++A +   E+  K     P +  +LL++C+S 
Sbjct: 460 RVFEKHGSYDIIA-FTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASL 518

Query: 408 NNLGLAKQV----IERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460
           +     KQV    I+R F + D   G+ ++ +   A+ G  ED D     + ++GV+
Sbjct: 519 SAYEQGKQVHAHLIKRQF-MSDVFAGNALVYTY--AKCGSIEDADLAFSGLPEKGVV 572



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 182/383 (47%), Gaps = 16/383 (4%)

Query: 27  LLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           LL R  + + L Q   IHA  +K+ L         L++F ++     S   A  +FD IP
Sbjct: 10  LLTRYAATQSLLQGAHIHAHLLKSGLFAVFR--NHLLSFYSKCRLPGS---ARRVFDEIP 64

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
           +P  V ++++   YS +  P  A+  F  + +  +  +++  P +LK     G      G
Sbjct: 65  DPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAGF-----G 119

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS-EPCVVSYNAIITAYAR 202
            QLH  A+  GL  +++V   L+ +Y     V+ AR +F+    E   VS+N +++AY +
Sbjct: 120 TQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVK 179

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
           + R + A+ +F E+    ++P +      +++C     L+ G+ +H  + + G DK V  
Sbjct: 180 NDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFT 239

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
             AL+DM++K G +  A  VF  +   D  +W+A I     HG    ++ +  +M  + +
Sbjct: 240 ANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGL 299

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            P+  T   +L AC+ +G  + G      M            +G +VD+  + G LD+A 
Sbjct: 300 VPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFG-LVDMYAKHGLLDDAK 358

Query: 383 RFIDELPIKSTPILWRTLLSSCS 405
           +  D +P +   +LW  L+S CS
Sbjct: 359 KVFDWIPQRDL-VLWNALISGCS 380



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 144/290 (49%), Gaps = 11/290 (3%)

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
           ++L +G  +H   +K GL +       L++ Y++C    +ARR+F+ I +PC VS+++++
Sbjct: 18  QSLLQGAHIHAHLLKSGLFAVFR--NHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLV 75

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
           TAY+ ++ P +AL  FR ++  +++  +  +   L      G    G  +H      GL 
Sbjct: 76  TAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAG---FGTQLHALAMATGLG 132

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQGHKSILMFEE 316
             + V  AL+ M+   G +D+A  VFD     ++T +W+ ++ AY  + +   ++ +F E
Sbjct: 133 GDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGE 192

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M+   V P+E  F  ++ AC+ +  ++ G    ++M  + G    +     +VD+  + G
Sbjct: 193 MVWGGVQPNEFGFSCVVNACTGSRDLEAG-RKVHAMVIRTGYDKDVFTANALVDMYSKLG 251

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
            +  A     ++P ++  + W   +S C  H   G  +  +E + ++  S
Sbjct: 252 DIRMAAVVFGKVP-ETDVVSWNAFISGCVLH---GHDQHALELLLQMKSS 297


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 177/502 (35%), Positives = 301/502 (59%), Gaps = 34/502 (6%)

Query: 88  VLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLH 147
           V++N +  G++RS     +   FV+++ +  +    ++ S+L AC     + L  G Q+H
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACG--KGKDLLLGMQVH 184

Query: 148 CFAIKLGLNSNLYVCTTLINLYAECSDVEAA----------------------------- 178
              ++ G+  +  V   L+++YAEC D++AA                             
Sbjct: 185 KRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVD 244

Query: 179 --RRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236
             R +F+++ E   +++ A+I  Y +  R  +AL  FR +Q   ++  + TM+S +++CA
Sbjct: 245 RARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACA 304

Query: 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSA 296
            LG+L+ G+W   Y+ + G+   V V  ALIDM++KCG ++ A+ VF +M  +D   W+A
Sbjct: 305 QLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTA 364

Query: 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKY 356
           +I+  A +G+G ++I MF  M++A  +PDE+TF+G+L AC+H GLVD+G  +F SM + Y
Sbjct: 365 IILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAY 424

Query: 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQV 416
            I P + HYGC++D+LGRAG+L EA   ID++P+K    +W TLL+SC  + N  + +  
Sbjct: 425 NISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELA 484

Query: 417 IERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVRE 476
            ER+ ELD  +   Y++LSN+ A++ RW+DV  +R+++ ++G+ K PGCS IE+N ++ E
Sbjct: 485 AERLLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHE 544

Query: 477 FFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAI 536
           F + D  H  + ++   L+ ++ +L+  GYVPD + V     E+E++++ L +HSEKLA+
Sbjct: 545 FVAADRSHPMNKEIYSKLENVLTDLRNAGYVPDVTEVLVEVTEEEKQKV-LYWHSEKLAV 603

Query: 537 TFGLLNTPPGTTIRVVKNLRVC 558
           TF LL +     IR+VKNLR+C
Sbjct: 604 TFALLTSESNVIIRIVKNLRMC 625



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 157/350 (44%), Gaps = 45/350 (12%)

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130
           ++  A  L D IP       ++   G+   +    A+  +V +L  G  PD Y+FPSLLK
Sbjct: 4   ALSRARSLLDGIPHRRGRAASSSVSGHGAEE----AVAGYVRMLAGGARPDAYTFPSLLK 59

Query: 131 ACACVGAEALEEGKQ---LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN--- 184
           A A     A+        +H   +K G+ SN +  ++LI +YA   D  AAR + E    
Sbjct: 60  AAAAARGAAVAAASVGGAIHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACL 119

Query: 185 -ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
                  V +NA+I+ + RS R   +   F ++   +   T VT +S LS+C     L L
Sbjct: 120 ATGGGAPVMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLL 179

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKC------------------------------ 273
           G  +H+ + + G+    +V  AL+DM+A+C                              
Sbjct: 180 GMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVR 239

Query: 274 -GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
            G++D A  +FD+M  +DT AW+AMI  Y   G+   ++  F  M   +V  DE T + +
Sbjct: 240 SGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSV 299

Query: 333 LYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           + AC+  G ++ G W   Y  R   GI   +     ++D+  + G ++ A
Sbjct: 300 VTACAQLGALETGEWARIYMGR--LGIKMDVFVGNALIDMYSKCGSIERA 347



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 134/275 (48%), Gaps = 9/275 (3%)

Query: 69  TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSL 128
           +  ++ A  LFD +PE D + +  M  GY +      A+  F  +    +  D+++  S+
Sbjct: 240 SGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSV 299

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP 188
           + ACA +G  ALE G+    +  +LG+  +++V   LI++Y++C  +E A  +F+++   
Sbjct: 300 VTACAQLG--ALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNR 357

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK-WI 247
              ++ AII   A + R  EA+ +F  +      P +VT +  L++C   G +D G+ + 
Sbjct: 358 DKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFF 417

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHGQ 306
               + Y +   V     LID+  + G+L +A+   D M  K ++  W  ++ +   +G 
Sbjct: 418 LSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGN 477

Query: 307 GHKSILMFEEMMKAQVSPDEIT---FLGLLYACSH 338
                L  E ++  ++ PD  T    L  +YA S+
Sbjct: 478 SEIGELAAERLL--ELDPDNSTAYILLSNMYAKSN 510


>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
 gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 181/502 (36%), Positives = 290/502 (57%), Gaps = 43/502 (8%)

Query: 27  LLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPD 86
           +L  C +   LK IHA  IK  L     ++TK+++ C +   T  + +A LLF ++ EP+
Sbjct: 20  ILQNCKNIVELKSIHAHVIKYSLSQSSFLVTKMVDVCDK---TEDLGYASLLFKQVKEPN 76

Query: 87  IVLFNTMARGYSRSKTPIRAIFLFVELL-------NSGLLPDDYSFPSLLKACACVGAEA 139
             L+N M R ++ +K    AI  + E+L        + + PD ++FP ++K+C+  G   
Sbjct: 77  GYLYNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCS--GLVC 134

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP----------- 188
              GKQ+H    K G  SN+ +   LI++Y +C+ +  A ++F+ + E            
Sbjct: 135 YNLGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISG 194

Query: 189 --------------------CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTM 228
                                +VS+ A+I+ Y R     +AL +FR++Q   ++P ++++
Sbjct: 195 HVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISI 254

Query: 229 LSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG 288
           +S L +CA LG+L++GKWIH Y  + GL +   +  AL++M++KCG +  A  +FD MS 
Sbjct: 255 ISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSK 314

Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNY 348
            D  +WS MI   A HG+  ++I +F+ M KA++ P+ ITFLGLL AC+H G  +EG  Y
Sbjct: 315 GDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLAY 374

Query: 349 FYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408
           F SM   Y I P ++HYGC+VD+LGRAGRL +A   I+++P+K    +W +LLSSC +H+
Sbjct: 375 FDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLSSCRTHS 434

Query: 409 NLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSI 468
           NL +A   +E + EL+    G+YV+LSN+ A   +W+ V  +RKL+K + + K PG S I
Sbjct: 435 NLDIAIIAMEHLEELEPDDTGNYVLLSNIYADLAKWDGVSRMRKLIKSKSMKKTPGSSLI 494

Query: 469 EVNNVVREFFSGDGVHSYSTDL 490
           ++NNVV+EF S D    +S D+
Sbjct: 495 DINNVVQEFVSWDDSKPFSRDI 516


>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
          Length = 1866

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 195/522 (37%), Positives = 306/522 (58%), Gaps = 8/522 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +Q+H++  K     ++ V++ L++   +      M  A  +F+ +P  ++V +NTM  G+
Sbjct: 150 EQMHSLVWKHGFLAEVFVVSALVDMYAK---CCDMLMAEKVFEEMPVRNLVSWNTMIVGF 206

Query: 98  SRSKTPIRAIFLFVELLNSGLLP-DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
            ++K   +AIF F  LL   L   D+ SF S+  ACA  G   LE GKQ+H  A+KLG+ 
Sbjct: 207 LQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGN--LEFGKQVHGVALKLGVW 264

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
           + +Y+  +L ++Y +C       ++F N     VV++N +I AY  +    +A + F  +
Sbjct: 265 NLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMM 324

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           + +   P + +  S L SCA L +L  G  IH  I + G  K ++V ++LI M+AKCG L
Sbjct: 325 RRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSL 384

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
            DA  +F+    ++   W+A+I A   HG  +  + +FE+M++  + PD ITF+ +L AC
Sbjct: 385 VDAFQIFEETEDRNVVCWTAIIAACQQHGHANWVVELFEQMLREGIKPDYITFVSVLSAC 444

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           SHTG V+EG+ YF SM   +GI PG +HY C+VDLL RAG LD A RFI+ +PIK    +
Sbjct: 445 SHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVDLLSRAGELDRAKRFIELMPIKPDASV 504

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
           W  LLS+C +H+NL + K+V  ++F+L+  + G+YV+L N+  R G   + D +R+ M+ 
Sbjct: 505 WGALLSACRNHSNLIMGKEVALKLFDLEPDNPGNYVLLCNILTRNGMLNEADEVRRKMES 564

Query: 457 RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHG 516
            GV K PGCS I++ N    F   D  H  + ++ + L++L + +K  GYV +T      
Sbjct: 565 IGVRKEPGCSWIDIKNSTYVFTVHDKSHEKTKEIYEMLEKLKELVKKKGYVAETEFA--I 622

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +  +E KE +L YHSEK+A+ FGLL+ P G  IR+ KNLR C
Sbjct: 623 NTAEEYKEQSLWYHSEKIALAFGLLSLPAGAPIRIKKNLRTC 664



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 119/448 (26%), Positives = 224/448 (50%), Gaps = 22/448 (4%)

Query: 26  SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE- 84
           SLL    + +   QIH+  I T L +   +   L+N   +     S++   LLF   P+ 
Sbjct: 35  SLLNCSRTSKHATQIHSQLITTALLSLPFLFNNLLNLYAK---CGSVDQTLLLFSSAPDD 91

Query: 85  -PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
             ++V + ++    +R K P +A+  F  +  SG+ P+ Y+F ++L AC    A     G
Sbjct: 92  SKNVVSWTSLITQLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSACTDTTASV--HG 149

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
           +Q+H    K G  + ++V + L+++YA+C D+  A ++FE +    +VS+N +I  + ++
Sbjct: 150 EQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFLQN 209

Query: 204 SRPNEALSLFRELQERNLKPTD-VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
              ++A+  F+ L   NL   D V+  S  S+CA  G+L+ GK +H    K G+   V +
Sbjct: 210 KLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNLVYI 269

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
           N +L DM+ KCG  +D   +F N   +D   W+ MI+AY  +     +   F  M +   
Sbjct: 270 NNSLSDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGS 329

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            PDE ++  +L++C++   + +G    ++   + G V  ++    ++ +  + G L +A+
Sbjct: 330 IPDEASYSSVLHSCANLAALYQG-TLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAF 388

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE--LDDSHGGDYVILSNL--- 437
           +  +E   ++  + W  ++++C  H   G A  V+E +FE  L +    DY+   ++   
Sbjct: 389 QIFEETEDRNV-VCWTAIIAACQQH---GHANWVVE-LFEQMLREGIKPDYITFVSVLSA 443

Query: 438 CARAGRWED-VDYLRKLMKDRGVLKVPG 464
           C+  GR E+   Y   ++K  G+   PG
Sbjct: 444 CSHTGRVEEGFFYFNSMIKVHGIY--PG 469


>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 500

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 189/498 (37%), Positives = 291/498 (58%), Gaps = 37/498 (7%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K++HA  I + L    N L KLI   T + ++SS+ HA LLFD I  P   L+NTM R Y
Sbjct: 5   KRLHAHLITSGLHQQENHLRKLITLYTSS-SSSSLHHARLLFDAIHHPSTYLYNTMFRVY 63

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           + S TP+ A+ L   +L  G  PD Y+FP LLKAC+ +    L +G++LHC A+K GL  
Sbjct: 64  AASPTPLHALLLHRHMLRHGPPPDTYTFPFLLKACSALAH--LPKGQELHCQALKFGLGG 121

Query: 158 NLYV-------------------------------CTTLINLYAECSDVEAARRIFENIS 186
           +++V                                TTL+  YA    V+AAR++F+ + 
Sbjct: 122 HVFVENSLIHLYGSNSGMDSARRVFDGMGYRDIASWTTLLACYANSCSVKAARKVFDEMP 181

Query: 187 EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW 246
           E  V+SY+A+I AY R +R  EAL LFREL    ++P+D  ++S L +CA LG+LD+G+W
Sbjct: 182 ERSVISYSAMIAAYVRGNRFREALDLFRELFSVKIEPSDSCVMSVLCACANLGALDVGRW 241

Query: 247 IHEYIKKYGLDKYV--KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
           ++ Y+ +   D YV  ++ TALIDM  KCG ++ A+ VF+    K    W+AM+   A H
Sbjct: 242 VYSYVCQSKGD-YVDSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAMH 300

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364
           G G + I  FE+M+ + V P+ +TF+ LL  CSH+GLV+EG  YF  M   +G+ P ++H
Sbjct: 301 GLGEQLIEAFEKMVDSGVKPNGVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVEH 360

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
           +GC+VDLLGRAG +D+A + I E+P +    +W +LL++C  + N+ + +   + + + +
Sbjct: 361 FGCVVDLLGRAGLIDQAMQLISEMPFEPNAAIWGSLLNACRVYKNVEIGELAAQWLIKDE 420

Query: 425 DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVH 484
             +G  Y+ L +L   AGRW++V+ ++  MK+ G  K PGCS IEV  +  EF  GD  H
Sbjct: 421 PWNGALYMTLLSLYREAGRWDEVEKVKLKMKEVGCRKGPGCSLIEVGGICYEFVVGDKSH 480

Query: 485 SYSTDLQKALDELVKELK 502
             + ++   L + ++E +
Sbjct: 481 PCAVEICLNLSKAIREFQ 498



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 153/359 (42%), Gaps = 44/359 (12%)

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYA--ECSDVEAARRIFENISEPCVVSYNAII 197
           ++E K+LH   I  GL+        LI LY     S +  AR +F+ I  P    YN + 
Sbjct: 1   MQEAKRLHAHLITSGLHQQENHLRKLITLYTSSSSSSLHHARLLFDAIHHPSTYLYNTMF 60

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
             YA S  P  AL L R +      P   T    L +C+ L  L  G+ +H    K+GL 
Sbjct: 61  RVYAASPTPLHALLLHRHMLRHGPPPDTYTFPFLLKACSALAHLPKGQELHCQALKFGLG 120

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAW----------------------- 294
            +V V  +LI ++     +D A  VFD M  +D  +W                       
Sbjct: 121 GHVFVENSLIHLYGSNSGMDSARRVFDGMGYRDIASWTTLLACYANSCSVKAARKVFDEM 180

Query: 295 --------SAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG- 345
                   SAMI AY    +  +++ +F E+   ++ P +   + +L AC++ G +D G 
Sbjct: 181 PERSVISYSAMIAAYVRGNRFREALDLFRELFSVKIEPSDSCVMSVLCACANLGALDVGR 240

Query: 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS 405
           W Y Y  + K   V   +    ++D+  + G ++ A    +    K     W  +LS  +
Sbjct: 241 WVYSYVCQSKGDYVDS-RIATALIDMFFKCGSIEHALLVFEGAKEKHVG-EWTAMLSGLA 298

Query: 406 SHNNLGLAKQVIERIFELDDS----HGGDYVILSNLCARAGRW-EDVDYLRKLMKDRGV 459
            H   GL +Q+IE   ++ DS    +G  +V L + C+ +G   E + Y  ++  D GV
Sbjct: 299 MH---GLGEQLIEAFEKMVDSGVKPNGVTFVALLSGCSHSGLVNEGLYYFDRMESDFGV 354


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 187/495 (37%), Positives = 285/495 (57%), Gaps = 11/495 (2%)

Query: 64  TQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDY 123
           T    +  ++ A  LFD  P  D+  +  M  GY +++    A  LF ++       ++ 
Sbjct: 258 TGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPER----NEV 313

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           S+ ++L     V  E +E  K+L      +    N+    T+I  YA+C  +  A+ +F+
Sbjct: 314 SWNAML--AGYVQGERMEMAKEL----FDVMPCRNVSTWNTMITGYAQCGKISEAKNLFD 367

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
            + +   VS+ A+I  Y++S    EAL LF +++    +    +  SALS+CA + +L+L
Sbjct: 368 KMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALEL 427

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303
           GK +H  + K G +    V  AL+ M+ KCG +++A  +F  M+GKD  +W+ MI  Y+ 
Sbjct: 428 GKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSR 487

Query: 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK 363
           HG G  ++  FE M +  + PD+ T + +L ACSHTGLVD+G  YFY+M   YG++P  +
Sbjct: 488 HGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQ 547

Query: 364 HYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
           HY CMVDLLGRAG L++A+  +  +P +    +W TLL +   H N  LA+   ++IF +
Sbjct: 548 HYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAM 607

Query: 424 DDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGV 483
           +  + G YV+LSNL A +GRW DV  LR  M+D+GV KVPG S IE+ N    F  GD  
Sbjct: 608 EPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEF 667

Query: 484 HSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNT 543
           H    ++   L+EL   +K  GYV  TS+V H D+E+EEKE  +RYHSE+LA+ +G++  
Sbjct: 668 HPEKDEIFAFLEELDLRMKKAGYVSKTSVVLH-DVEEEEKERMVRYHSERLAVAYGIMRV 726

Query: 544 PPGTTIRVVKNLRVC 558
             G  IRV+KNLRVC
Sbjct: 727 SSGRPIRVIKNLRVC 741



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/340 (21%), Positives = 148/340 (43%), Gaps = 69/340 (20%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
            E A  LFD +PE D+V +N M +GY R++   +A  LF       ++P+          
Sbjct: 111 FELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFE------IMPE---------- 154

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
                                     ++    T+++ YA+   V+ AR +F+ + E   V
Sbjct: 155 -------------------------RDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDV 189

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI---H 248
           S+NA+++AY ++S+  EA  LF+  +   L          +S   LLG     K I    
Sbjct: 190 SWNALLSAYVQNSKMEEACMLFKSRENWAL----------VSWNCLLGGFVKKKKIVEAR 239

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
           ++     +   V  NT +I  +A+ G++D+A  +FD    +D   W+AM+  Y  +    
Sbjct: 240 QFFDSMNVRDVVSWNT-IITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVE 298

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP--GIKHYG 366
           ++  +F++M +     +E+++  +L        ++         ++ + ++P   +  + 
Sbjct: 299 EARELFDKMPE----RNEVSWNAMLAGYVQGERMEMA-------KELFDVMPCRNVSTWN 347

Query: 367 CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
            M+    + G++ EA    D++P K  P+ W  +++  S 
Sbjct: 348 TMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAGYSQ 386



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 128/270 (47%), Gaps = 18/270 (6%)

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
           +S++      I+ Y        A R+F+ +     VSYN +I+ Y R+     A  LF E
Sbjct: 61  DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
           + ER+L   +V +   + +  L  + +L + + E        + V     ++  +A+ G 
Sbjct: 121 MPERDLVSWNVMIKGYVRNRNLGKARELFEIMPE--------RDVCSWNTMLSGYAQNGC 172

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           +DDA SVFD M  K+  +W+A++ AY  + +  ++ ++F    K++ +   +++  LL  
Sbjct: 173 VDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLF----KSRENWALVSWNCLLGG 228

Query: 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
                 + E   +F SM      V  +  +  ++    ++G++DEA +  DE P++    
Sbjct: 229 FVKKKKIVEARQFFDSMN-----VRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDV-F 282

Query: 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
            W  ++S    +  +  A+++ +++ E ++
Sbjct: 283 TWTAMVSGYIQNRMVEEARELFDKMPERNE 312


>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
          Length = 1113

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 190/536 (35%), Positives = 305/536 (56%), Gaps = 12/536 (2%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+   C     L   KQ+H+  I++ L +D  V   L++   +     S++    +FDR+
Sbjct: 274 SVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRM 331

Query: 83  PEPDIVLFNTMARGYSRS-KTPIRAIFLFVELLNSG-LLPDDYSFPSLLKACACVGAEAL 140
            +  ++ +  +  GY ++      AI LF E++  G + P+ ++F S  KAC  +    +
Sbjct: 332 EDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRV 391

Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY 200
             GKQ+   A K GL SN  V  ++I+++ +   +E A+R FE++SE  +VSYN  +   
Sbjct: 392 --GKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGT 449

Query: 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
            R+    +A  L  E+ ER L  +  T  S LS  A +GS+  G+ IH  + K GL    
Sbjct: 450 CRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQ 509

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            V  ALI M++KCG +D A  VF+ M  ++  +W++MI  +A HG   + +  F +M++ 
Sbjct: 510 PVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEE 569

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
            V P+E+T++ +L ACSH GLV EGW +F SM + + I P ++HY CMVDLL RAG L +
Sbjct: 570 GVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTD 629

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           A+ FI+ +P ++  ++WRT L +C  H+N  L K    +I ELD +    Y+ LSN+ A 
Sbjct: 630 AFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYAC 689

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
           AG+WE+   +R+ MK+R ++K  GCS IEV + + +F+ GD  H  +  +   LD L+ E
Sbjct: 690 AGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITE 749

Query: 501 LKMVGYVPDTSLVHHGDMEDEEKEIALR---YHSEKLAITFGLLNTPPGTTIRVVK 553
           +K  GYVPDT LV H   E+ ++    R    HSEK+A+ FGL++T     +++++
Sbjct: 750 IKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPLKMIQ 805



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 194/400 (48%), Gaps = 13/400 (3%)

Query: 30  RCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVL 89
           R   FR  K +HA  I+  ++ D  +   LI+  +++  ++  E       R  + D+V 
Sbjct: 74  RARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVS 133

Query: 90  FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCF 149
           ++ M   Y  +   + AI +FVE L  GL+P+DY + ++++AC+   ++ +  G+    F
Sbjct: 134 WSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACS--NSDFVGVGRVTLGF 191

Query: 150 AIKLG-LNSNLYVCTTLINLYAECSD-VEAARRIFENISEPCVVSYNAIITAYARSSRPN 207
            +K G   S++ V  +LI+++ +  +  E A ++F+ +SE  VV++  +IT   +   P 
Sbjct: 192 LMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPR 251

Query: 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267
           EA+  F ++     +    T+ S  S+CA L +L LGK +H +  + GL     V  +L+
Sbjct: 252 EAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVD--DVECSLV 309

Query: 268 DMHAKC---GRLDDAVSVFDNMSGKDTQAWSAMIVAYATH-GQGHKSILMFEEMM-KAQV 322
           DM+AKC   G +DD   VFD M      +W+A+I  Y  +     ++I +F EM+ +  V
Sbjct: 310 DMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHV 369

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            P+  TF     AC +      G         K G+         ++ +  ++ R+++A 
Sbjct: 370 EPNHFTFSSAFKACGNLSDPRVG-KQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQ 428

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
           R  + L  K+  + + T L     + N   A +++  I E
Sbjct: 429 RAFESLSEKNL-VSYNTFLDGTCRNLNFEQAFKLLSEITE 467



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 106/459 (23%), Positives = 198/459 (43%), Gaps = 30/459 (6%)

Query: 59  LINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118
           +I+F   +P    ++    + +RI   D ++   +  G  R      A+     +   G+
Sbjct: 3   MISFSFPSPAKLPIKSQPSVSNRINVADRLILRHLNAGDLRG-----AVSALDLMARDGI 57

Query: 119 LP-DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEA 177
            P D  +F SLLK+C  + A     GK +H   I+  +  +  +  +LI+LY++  D   
Sbjct: 58  RPMDSVTFSSLLKSC--IRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAK 115

Query: 178 ARRIFENI---SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSS 234
           A  +FE +    +  VVS++A++  Y  + R  +A+ +F E  E  L P D    + + +
Sbjct: 116 AEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRA 175

Query: 235 CALLGSLDLGKWIHEYIKKYG-LDKYVKVNTALIDMHAKC-GRLDDAVSVFDNMSGKDTQ 292
           C+    + +G+    ++ K G  +  V V  +LIDM  K     ++A  VFD MS  +  
Sbjct: 176 CSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVV 235

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352
            W+ MI      G   ++I  F +M+ +    D+ T   +  AC+    +  G    +S 
Sbjct: 236 TWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLG-KQLHSW 294

Query: 353 RDKYGIVPGIKHYGCMVDLLGRA---GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
             + G+V  ++    +VD+  +    G +D+  +  D +   S  + W  L++      N
Sbjct: 295 AIRSGLVDDVE--CSLVDMYAKCSADGSVDDCRKVFDRMEDHSV-MSWTALIT--GYMKN 349

Query: 410 LGLAKQVIERIFEL-DDSH-GGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSS 467
             LA + I    E+    H   ++   S+     G   D    ++++       +   SS
Sbjct: 350 CNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSS 409

Query: 468 IEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGY 506
           +  N+V+  F   D +     D Q+A + L  E  +V Y
Sbjct: 410 V-ANSVISMFVKSDRME----DAQRAFESL-SEKNLVSY 442


>gi|357141490|ref|XP_003572243.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Brachypodium distachyon]
          Length = 884

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 188/477 (39%), Positives = 274/477 (57%), Gaps = 13/477 (2%)

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
           P     N++ R  S S     A+     +   G   + +S   LLK C       L   +
Sbjct: 378 PSTFCCNSILRCLSESD----ALSFLRRMRTLGRRGNAFSLAILLKPC-----RTLSHAR 428

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           QLH   +  G   +  + T+L+  YA C   + AR++F+ +     V++N +IT YAR+ 
Sbjct: 429 QLHANVVIEGHLRDSLLATSLMRSYAICGVGDCARKVFDEMVMKDTVAWNVLITCYARNK 488

Query: 205 RPNEALSLFRELQ--ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
           R  + L LF E++  E  +KP +VT +  L +C  LG+LD G+ I EY  ++G    +KV
Sbjct: 489 RTKDTLWLFDEMRRGESEVKPDEVTCILLLQACTSLGALDFGEQIWEYAVEHGYGCELKV 548

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
             ++I M+ +CG ++ A  VF +   K    WSAMI+  A +G G  +I  FEEM ++ V
Sbjct: 549 RNSVITMYTRCGCVEKAYQVFCHTPQKSVVTWSAMIMGLAANGFGEDAISAFEEMSRSGV 608

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            PD  TF G+L ACSH+GLVDEG+ +F  MR +Y ++P ++HYGC+VDL+GRAG LDEAY
Sbjct: 609 VPDGQTFTGVLSACSHSGLVDEGFRFFDMMRYEYKMMPNVRHYGCIVDLMGRAGLLDEAY 668

Query: 383 RF-IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
              + E+ +     +WRTLL +C  H ++ L ++VI  + EL     GDYV+L N  A A
Sbjct: 669 ELVVKEMKVAPDATIWRTLLGACRIHGHVDLGEKVISHLIELKAQQAGDYVLLLNTYAAA 728

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           G WE V  +RKLM++  +   PGC+++E+N  + EF + D  H    ++   LDE+ + L
Sbjct: 729 GDWEKVAEVRKLMRENEIQTTPGCTTVELNGELHEFIADDASHPRKAEIYGKLDEINRHL 788

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           ++ GYVP  S   H D++ E KE AL YHSEKLAI F LL  P    IR+ KNLRVC
Sbjct: 789 RIAGYVPHVSSDLH-DLDSEGKECALTYHSEKLAIAFALLVMPQRRPIRLAKNLRVC 844



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 157/325 (48%), Gaps = 19/325 (5%)

Query: 23  NALSL---LPRCTSFRGLKQIHA-VTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLL 78
           NA SL   L  C +    +Q+HA V I+ HL++ L   + + ++          + A  +
Sbjct: 410 NAFSLAILLKPCRTLSHARQLHANVVIEGHLRDSLLATSLMRSYAI----CGVGDCARKV 465

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL--NSGLLPDDYSFPSLLKACACVG 136
           FD +   D V +N +   Y+R+K     ++LF E+    S + PD+ +   LL+AC  +G
Sbjct: 466 FDEMVMKDTVAWNVLITCYARNKRTKDTLWLFDEMRRGESEVKPDEVTCILLLQACTSLG 525

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
             AL+ G+Q+  +A++ G    L V  ++I +Y  C  VE A ++F +  +  VV+++A+
Sbjct: 526 --ALDFGEQIWEYAVEHGYGCELKVRNSVITMYTRCGCVEKAYQVFCHTPQKSVVTWSAM 583

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK-KYG 255
           I   A +    +A+S F E+    + P   T    LS+C+  G +D G    + ++ +Y 
Sbjct: 584 IMGLAANGFGEDAISAFEEMSRSGVVPDGQTFTGVLSACSHSGLVDEGFRFFDMMRYEYK 643

Query: 256 LDKYVKVNTALIDMHAKCGRLDDA--VSVFDNMSGKDTQAWSAMIVAYATHGQ---GHKS 310
           +   V+    ++D+  + G LD+A  + V +     D   W  ++ A   HG    G K 
Sbjct: 644 MMPNVRHYGCIVDLMGRAGLLDEAYELVVKEMKVAPDATIWRTLLGACRIHGHVDLGEKV 703

Query: 311 ILMFEEMMKAQVSPDEITFLGLLYA 335
           I    E +KAQ + D +  L    A
Sbjct: 704 ISHLIE-LKAQQAGDYVLLLNTYAA 727


>gi|297733959|emb|CBI15206.3| unnamed protein product [Vitis vinifera]
          Length = 416

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 171/399 (42%), Positives = 258/399 (64%), Gaps = 4/399 (1%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           M++A  +F +I  PD  L+NTM RG  R++ P +A   +  +   G + D++++  L+K 
Sbjct: 1   MDYALRVFGKIENPDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKV 60

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C  +G++ L  GKQ+HC  +K GL  +++V  TL+++Y    D+EAA  +FE + +  +V
Sbjct: 61  CGQLGSDLL--GKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLV 118

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           ++N II       R  EA+ LF  + +  LKP D T +  LS+CA LG LD+G+ +H  I
Sbjct: 119 AWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGRRVHSCI 178

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
              GL   V V+ +LIDM+AKCG ++ A  +F+ M G++  +W+ MI+  A HG G +++
Sbjct: 179 DHTGLGNVVSVSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEAL 238

Query: 312 LMFEEMMKAQV-SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370
            +F +M++ ++ +P+E+TFLG+L ACSH G+V+EG  YF  MR  Y I P IKHYG MVD
Sbjct: 239 ELFSKMLEEKLATPNEVTFLGVLCACSHGGMVEEGRRYFDIMRRDYNIQPTIKHYGSMVD 298

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430
           +LGRAG ++EAYR I  +PI+S  I+WRTLL++C  H NL LA+QV +++ EL+  H  D
Sbjct: 299 ILGRAGLVEEAYRLIKSMPIESNSIVWRTLLAACRVHGNLELAEQVRQQLLELEPDHSSD 358

Query: 431 YVILSNLCARAGRWEDVDYLRKLMKDRGVLK-VPGCSSI 468
           YV+L+N+ A AG+W  V  +RK M  RGV K  PG S I
Sbjct: 359 YVLLANMYASAGQWNKVVRVRKSMHIRGVQKPKPGNSYI 397


>gi|449441061|ref|XP_004138302.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
 gi|449477575|ref|XP_004155061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 506

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 177/477 (37%), Positives = 286/477 (59%), Gaps = 15/477 (3%)

Query: 7   PPITQSPPPKLCTNT-PNA---------LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVL 56
           P    S   K  T+T PN          + L  +C++ + L Q+HA  I+     +L V+
Sbjct: 31  PRFIWSSGLKTATDTIPNGGYFAKEQKFMFLFKQCSTLKDLNQLHASIIRLGFDQNLFVI 90

Query: 57  TKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS 116
            KLI+FC  +     M +A ++FDRI   D  L+NTM RG+ R++  + A   +  +L  
Sbjct: 91  GKLIDFCAVSDH-GDMNYAVVVFDRIENADGFLWNTMIRGFGRNRKLLMAFEFYKRMLEK 149

Query: 117 GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVE 176
           G+  D+++F  LLK    +G+  L  GKQLH   +KLGL+S++YV  TLI++Y    DV 
Sbjct: 150 GIAADNFTFSFLLKMTGQLGSIML--GKQLHVNILKLGLDSHVYVRNTLIHMYGRLKDVN 207

Query: 177 AARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236
            AR +F+ + +  +V++NA+I  +      NEAL LF ++ +  ++P + T++  +S+C+
Sbjct: 208 IARNLFDELPKTDLVAWNAVIDCHVSCGMYNEALDLFVQMLQSGVEPDEATLVVTISACS 267

Query: 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSA 296
            LG+LD G+W+H ++      K + V  +LIDM+AKCG ++ A  +F+ +SGK+   W+ 
Sbjct: 268 ALGALDCGRWVHSHVNSNDRGKTIAVFNSLIDMYAKCGAVEYAREMFNAVSGKNIVTWNT 327

Query: 297 MIVAYATHGQGHKSILMFEEMMKAQV-SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355
           MI+  ATHG    ++ +F  M+  +V +PD +TFL +L AC++ G V+EG  YF  M   
Sbjct: 328 MIMGLATHGDAEDALTLFSNMLAERVETPDGVTFLAVLCACNYGGKVEEGRRYFDLMTKH 387

Query: 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQ 415
           + I P +KHYG MVD+LGRAG ++EAY+ I  +P++   ++WRTLL++C  H N+ L ++
Sbjct: 388 FNIQPTLKHYGSMVDILGRAGFVEEAYQLIKSMPMECNAVIWRTLLAACQMHGNVELGER 447

Query: 416 VIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLK-VPGCSSIEVN 471
           V   + E+   H  DYV+L+N+ A +G+W ++   RK M  +GV K  PG S +E+N
Sbjct: 448 VSSHVLEIVADHSSDYVLLANMYASSGQWNEMIKTRKSMHRKGVEKPEPGNSYLEIN 504


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 203/550 (36%), Positives = 318/550 (57%), Gaps = 17/550 (3%)

Query: 20  NTPNA---LSLLPRCTSFRGLKQ---IHAVTIKT---HLQND-LNVLTKLINFCTQNPTT 69
           + PNA   ++LLP       L Q   +HA +++    H   D + V T L++   +    
Sbjct: 225 HAPNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAK---C 281

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL-LPDDYSFPSL 128
             + +A  +F+ +   + V ++ +  G+      + A  LF ++L  GL      S  S 
Sbjct: 282 GHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASA 341

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP 188
           L+ACA +    L  GKQLH    K GL+++L    +L+++YA+   ++ A  +F+ +   
Sbjct: 342 LRACANLSDLCL--GKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVK 399

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
             VSY+A+++ Y ++ + +EA  +FR++Q  N++P   TM+S + +C+ L +L  GK  H
Sbjct: 400 DTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGH 459

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
             +   G+     +  ALIDM+AKCGR+D +  +FD M  +D  +W+ MI  Y  HG G 
Sbjct: 460 GSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGK 519

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
           ++  +F +M      PD++TF+ L+ ACSH+GLV EG  +F+ M  KYGI P ++HY  M
Sbjct: 520 EATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGM 579

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428
           VDLL R G LDEAY+FI  +P+K+   +W  LL +C  H N+ L KQV   I +L     
Sbjct: 580 VDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQLGPEGT 639

Query: 429 GDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYST 488
           G++V+LSN+ + AGR+++   +R + K++G  K PGCS IE+N  +  F  GD  H+ S+
Sbjct: 640 GNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLHAFIGGDRSHAQSS 699

Query: 489 DLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTT 548
           ++ + LD ++ ++  +GY  DTS V   D+E+EEKE AL YHSEKLAI FG+L      T
Sbjct: 700 EIYQELDNILVDINKLGYRADTSFVLQ-DVEEEEKEKALLYHSEKLAIAFGVLTLSEDKT 758

Query: 549 IRVVKNLRVC 558
           I V KNLRVC
Sbjct: 759 IFVTKNLRVC 768



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 207/431 (48%), Gaps = 36/431 (8%)

Query: 34  FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM 93
            R  + +H    +  L  DL V T L++   +    +S  HA  +F R+P  D+V +N M
Sbjct: 145 LRSARAVHCHAARAGLHADLFVSTALVDVYAK---CASFRHAATVFRRMPARDVVAWNAM 201

Query: 94  ARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL 153
             GY+        I   + L+     P+  +  +LL   A  G  AL +G+ +H ++++ 
Sbjct: 202 LAGYALHGKYSDTIACLL-LMQDDHAPNASTLVALLPLLAQHG--ALSQGRAVHAYSVRA 258

Query: 154 ----GLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEA 209
                    + V T L+++YA+C  +  A R+FE ++    V+++A++  +    R  EA
Sbjct: 259 CSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEA 318

Query: 210 LSLFRELQERN---LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
            SLF+++  +    L PT V   SAL +CA L  L LGK +H  + K GL   +    +L
Sbjct: 319 FSLFKDMLAQGLCFLSPTSVA--SALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSL 376

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           + M+AK G +D A ++FD M  KDT ++SA++  Y  +G+  ++  +F +M    V PD 
Sbjct: 377 LSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDV 436

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
            T + L+ ACSH   +  G     S+  + GI         ++D+  + GR+D + +  D
Sbjct: 437 ATMVSLIPACSHLAALQHGKCGHGSVIVR-GIASETSICNALIDMYAKCGRIDLSRQIFD 495

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL-------DDSHGGDYVILSNLCA 439
            +P +   + W T+++    H   GL K+      ++       DD     ++ L + C+
Sbjct: 496 VMPARDI-VSWNTMIAGYGIH---GLGKEATALFLDMKHQACEPDDV---TFICLISACS 548

Query: 440 RAG------RW 444
            +G      RW
Sbjct: 549 HSGLVTEGKRW 559



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 168/323 (52%), Gaps = 13/323 (4%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           LFD+IP P I  +N + R YS     +               P++Y+FP +LKAC+ +  
Sbjct: 85  LFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVLKACSAL-- 142

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
             L   + +HC A + GL+++L+V T L+++YA+C+    A  +F  +    VV++NA++
Sbjct: 143 LDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVVAWNAML 202

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY-IKKYGL 256
             YA   + ++ ++    +Q+ +  P   T+++ L   A  G+L  G+ +H Y ++   L
Sbjct: 203 AGYALHGKYSDTIACLLLMQDDH-APNASTLVALLPLLAQHGALSQGRAVHAYSVRACSL 261

Query: 257 DKY---VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
             +   V V TAL+DM+AKCG L  A  VF+ M+ ++   WSA++  +   G+  ++  +
Sbjct: 262 HDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSL 321

Query: 314 FEEMMKAQ---VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370
           F++M+      +SP  +     L AC++   +  G    +++  K G+   +     ++ 
Sbjct: 322 FKDMLAQGLCFLSPTSVA--SALRACANLSDLCLG-KQLHALLAKSGLHTDLTAGNSLLS 378

Query: 371 LLGRAGRLDEAYRFIDELPIKST 393
           +  +AG +D+A    D++ +K T
Sbjct: 379 MYAKAGLIDQATTLFDQMVVKDT 401



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 114/237 (48%), Gaps = 13/237 (5%)

Query: 172 CSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSA 231
           C D+  AR +F+ I  P +  YNA+I AY+               + R  +P + T    
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 232 LSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDT 291
           L +C+ L  L   + +H +  + GL   + V+TAL+D++AKC     A +VF  M  +D 
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDV 195

Query: 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFY 350
            AW+AM+  YA HG+   +I     +M+   +P+  T + LL   +  G + +G   + Y
Sbjct: 196 VAWNAMLAGYALHGKYSDTIACL-LLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAY 254

Query: 351 SMR------DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
           S+R       K G++ G      ++D+  + G L  A R  + + +++  + W  L+
Sbjct: 255 SVRACSLHDHKDGVLVGTA----LLDMYAKCGHLVYASRVFEAMAVRNE-VTWSALV 306


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 206/602 (34%), Positives = 319/602 (52%), Gaps = 82/602 (13%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINF---CTQNPTTSSMEHAHLL 78
           P+A+      ++ +  +Q+H +   +   +D  V + L++    C Q      +  AH +
Sbjct: 118 PSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQ------IRDAHRV 171

Query: 79  FDRIPEPDIV--------------------LF---------------NTMARGYSRSKTP 103
           FDR+ EPD+V                    LF               N M  G++ S   
Sbjct: 172 FDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLY 231

Query: 104 IRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCT 163
             A+ +F+++   G  PD  +  S+L A   +  E L  G  +H + IK GL S+  V +
Sbjct: 232 SEAVLMFLDMHLRGFEPDGTTISSVLPAVGDL--EDLVMGILIHGYVIKQGLVSDKCVSS 289

Query: 164 TLINLYAECS-------------------------------DVEAARRIFENIS----EP 188
            LI++Y +CS                                VE++ R+F  +     E 
Sbjct: 290 ALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMEL 349

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
            VVS+ ++I   +++ R  EAL LFRE+Q   +KP  VT+   L +C  + +L  GK  H
Sbjct: 350 NVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAH 409

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
            +  + G+   V V +ALIDM+AKCGR+  +   FD +  K+   W+A+I  YA HG+  
Sbjct: 410 CFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAK 469

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
           +++ +F+ M ++   PD I+F  +L ACS +GL +EG  YF SM  KYGI   ++HY CM
Sbjct: 470 EAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACM 529

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428
           V LL RAG+L++AY  I  +P+     +W  LLSSC  HNN+ L +   E++FEL+ S+ 
Sbjct: 530 VTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNP 589

Query: 429 GDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYST 488
           G+Y++LSN+ A  G W +V+ +R +MK++G+ K PGCS IEV N V    +GD  H   T
Sbjct: 590 GNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMT 649

Query: 489 DLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTT 548
            + + LD+L  E+K +GY P+ + V   D+E+++KE  L  HSEKLA+ FGLLNTPPG  
Sbjct: 650 QIIENLDKLSMEMKKLGYFPEINFVLQ-DVEEQDKEQILCGHSEKLAVVFGLLNTPPGYP 708

Query: 549 IR 550
           ++
Sbjct: 709 LQ 710



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 135/502 (26%), Positives = 232/502 (46%), Gaps = 88/502 (17%)

Query: 32  TSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFN 91
            S    +Q HA  +KT L ND ++ TKL++    N   +    A L+ D +PEP++  F+
Sbjct: 27  ASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFAD---ATLVLDLVPEPNVFSFS 83

Query: 92  TMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAI 151
           T+   +S+      A+  F ++L  GL+PD+   PS +KACA  G  AL+  +Q+H  A 
Sbjct: 84  TLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACA--GLSALKPARQVHGIAS 141

Query: 152 KLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS------- 204
             G +S+ +V ++L+++Y +C+ +  A R+F+ + EP VVS++A++ AYAR         
Sbjct: 142 VSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKR 201

Query: 205 ----------RPN------------------EALSLFRELQERNLKPTDVTMLSALSSCA 236
                     +PN                  EA+ +F ++  R  +P   T+ S L +  
Sbjct: 202 LFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVG 261

Query: 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ---- 292
            L  L +G  IH Y+ K GL     V++ALIDM+ KC    +   VFD M   D      
Sbjct: 262 DLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNA 321

Query: 293 -------------------------------AWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
                                          +W++MI   + +G+  +++ +F EM  A 
Sbjct: 322 FIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAG 381

Query: 322 VSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
           V P+ +T   LL AC +   +  G   + +S+R   GI   +     ++D+  + GR+  
Sbjct: 382 VKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRR--GISTDVYVGSALIDMYAKCGRIQA 439

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS----- 435
           +    D +P K+  + W  +++  + H   G AK+ +E IF+L    G    I+S     
Sbjct: 440 SRICFDGIPTKNL-VCWNAVIAGYAMH---GKAKEAME-IFDLMQRSGQKPDIISFTCVL 494

Query: 436 NLCARAGRWEDVDYLRKLMKDR 457
           + C+++G  E+  Y    M  +
Sbjct: 495 SACSQSGLTEEGSYYFNSMSSK 516


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 202/554 (36%), Positives = 313/554 (56%), Gaps = 14/554 (2%)

Query: 16  KLCTNTPNALSLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLIN-------FCTQ 65
           +L  N    ++LLP       L Q   +HA  I+  L  + N  +KL +           
Sbjct: 223 RLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDM 282

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL-LPDDYS 124
                S+ +A  +FD +P  + V ++ +  G+       +A  LF  +L  GL      S
Sbjct: 283 YAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS 342

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
             S L+ACA +  + L  G+QLH    K G++++L    +L+++YA+   ++ A  +F+ 
Sbjct: 343 IASALRACASL--DHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDE 400

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
           ++    VSY+A+++ Y ++ R  EA  +F+++Q  N++P   TM+S + +C+ L +L  G
Sbjct: 401 MAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHG 460

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
           +  H  +   GL     +  ALIDM+AKCGR+D +  VF+ M  +D  +W+ MI  Y  H
Sbjct: 461 RCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIH 520

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364
           G G ++  +F EM      PD +TF+ LL ACSH+GLV EG ++F+ M   YG+ P ++H
Sbjct: 521 GLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEH 580

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
           Y CMVDLL R G LDEAY FI  +P+++   +W  LL +C  + N+ L K+V   I EL 
Sbjct: 581 YICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELG 640

Query: 425 DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVH 484
               G++V+LSN+ + AGR+++   +R + K +G  K PGCS IE+N  +  F  GD  H
Sbjct: 641 PEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSH 700

Query: 485 SYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTP 544
             S ++ + LD ++  +K +GY PDTS V   D+E+EEKE AL  HSEKLAI +G+L+  
Sbjct: 701 PQSPEIYRELDNILVGIKKLGYQPDTSFVLQ-DLEEEEKEKALICHSEKLAIAYGILSLS 759

Query: 545 PGTTIRVVKNLRVC 558
              TI V KNLRVC
Sbjct: 760 EDKTIFVTKNLRVC 773



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 172/343 (50%), Gaps = 22/343 (6%)

Query: 68  TTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRA--IFLFVELLNSGLLPDDYSF 125
            +  +  AH LFD+IP PD+  +N + R YS S     A  + L+  +L   + P++Y+F
Sbjct: 69  ASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTF 128

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
           P  LKAC+ +       G+ +H  AI  GL ++L+V T L+++Y +C+ +  A  IF  +
Sbjct: 129 PFALKACSALADH--HCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 186 SEPCVVSYNAIITAYARSSRPNEALS--LFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
               +V++NA++  YA     + A++  L  ++Q   L+P   T+++ L   A  G+L  
Sbjct: 187 PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 246

Query: 244 GKWIHEYI----------KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
           G  +H Y            K  L   V + TAL+DM+AKCG L  A  VFD M  ++   
Sbjct: 247 GTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVT 306

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQ---VSPDEITFLGLLYACSHTGLVDEGWNYFY 350
           WSA+I  +    +  ++ L+F+ M+      +SP  I     L AC+    +  G    +
Sbjct: 307 WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMG-EQLH 363

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
           ++  K G+   +     ++ +  +AG +D+A    DE+ +K T
Sbjct: 364 ALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDT 406



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 117/237 (49%), Gaps = 14/237 (5%)

Query: 178 ARRIFENISEPCVVSYNAIITAYARSS--RPNEALSLFRELQERNLKPTDVTMLSALSSC 235
           A  +F+ I  P V +YN +I AY+ SS     + L L+R +    + P + T   AL +C
Sbjct: 76  AHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKAC 135

Query: 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWS 295
           + L     G+ IH +    GL   + V+TAL+DM+ KC  L DA  +F  M  +D  AW+
Sbjct: 136 SALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWN 195

Query: 296 AMIVAYATHGQGHKSI--LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSM 352
           AM+  YA HG  H ++  L+  +M   ++ P+  T + LL   +  G + +G + + Y +
Sbjct: 196 AMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCI 255

Query: 353 R--------DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
           R         K  +  G+     ++D+  + G L  A R  D +P ++  + W  L+
Sbjct: 256 RACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNE-VTWSALI 311


>gi|297794613|ref|XP_002865191.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311026|gb|EFH41450.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 187/482 (38%), Positives = 279/482 (57%), Gaps = 6/482 (1%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           LF ++P  +++ + TM  G  +++    A+ LF  +L   +     +F  ++ ACA   A
Sbjct: 181 LFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCCIKSTSRTFTCVITACA--NA 238

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
            A   G Q+H F IK G     YV  +LI LYA C   E +R++F  +    V  + A++
Sbjct: 239 PAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRKVFGEMVHEKVAVWTALL 298

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
           + Y+ + +  +AL++F E+   ++ P   T  S L+SC+ LG+LD GK IH    K GL 
Sbjct: 299 SGYSLNRKHEDALNVFSEMIRNSILPNQSTFASGLNSCSALGTLDWGKEIHGVAVKLGLG 358

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
               V  +L+ M++  G ++DAVSVF  +  K   +W+++IV  A HG+G  + ++F +M
Sbjct: 359 TVAFVGNSLVVMYSDSGNVNDAVSVFIEIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQM 418

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG-IVPGIKHYGCMVDLLGRAG 376
           ++    PDEITF GLL ACSH G + +G   FY +      I   I+HY CMVD+LGR G
Sbjct: 419 IRLNKEPDEITFTGLLSACSHCGFLQKGRKLFYYISSGLNHIDRKIQHYTCMVDILGRCG 478

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSN 436
            L EA + I+ + +K   ++W  LLS+C  H+++   ++    IF LD      YV+LSN
Sbjct: 479 ELKEAEKLIESMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKSSAAYVLLSN 538

Query: 437 LCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDE 496
           + A AGRW  V  LR  MK +G++K PG S + +     EFFSGD  H     + + L+ 
Sbjct: 539 IYASAGRWSSVSKLRVKMKQKGIMKKPGSSWVVIRGKKHEFFSGDRPHCLR--IFEKLEF 596

Query: 497 LVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLR 556
           L ++LK +GYVPD     H D+EDE+KE  L YHSE+LAI FGL+NT  G+T+ V+KNLR
Sbjct: 597 LREKLKELGYVPDYRSALH-DVEDEQKEEMLWYHSERLAIAFGLINTVEGSTVTVMKNLR 655

Query: 557 VC 558
           VC
Sbjct: 656 VC 657



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 171/382 (44%), Gaps = 39/382 (10%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           ++ A  +FD++P P + L+  M  GY+RS   + A+ LF E+     L D  S+ S++  
Sbjct: 51  LDEAREVFDQVPSPHVSLYTKMISGYTRSNRLVDALNLFDEMP----LRDVVSWNSMISG 106

Query: 132 C-------------------ACVGAEALEEGKQLHCFAIKLGLNSNLYVC---------- 162
           C                   + V   A+  G    CF   +   +    C          
Sbjct: 107 CVECGDIDTAVKMFDEMPERSVVSWTAMVNG----CFRFGMVDQAERLFCQMPVKDIAAW 162

Query: 163 TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK 222
             +++ Y +   V+ A ++F+ +    V+S+  +I    ++ R  EAL+LF+ +    +K
Sbjct: 163 NAMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCCIK 222

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
            T  T    +++CA   +  +G  +H +I K G      V  +LI ++A C R +D+  V
Sbjct: 223 STSRTFTCVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRKV 282

Query: 283 FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342
           F  M  +    W+A++  Y+ + +   ++ +F EM++  + P++ TF   L +CS  G +
Sbjct: 283 FGEMVHEKVAVWTALLSGYSLNRKHEDALNVFSEMIRNSILPNQSTFASGLNSCSALGTL 342

Query: 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
           D G    + +  K G+         +V +   +G +++A     E+  K + + W +++ 
Sbjct: 343 DWG-KEIHGVAVKLGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEI-FKKSIVSWNSIIV 400

Query: 403 SCSSHNNLGLAKQVIERIFELD 424
            C+ H     A  +  ++  L+
Sbjct: 401 GCAQHGRGKWAFVIFGQMIRLN 422



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 93/191 (48%), Gaps = 14/191 (7%)

Query: 143 GKQLHCFAIKLGL-NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           GK    +++ +   N  + +C  L+N       ++ AR +F+ +  P V  Y  +I+ Y 
Sbjct: 23  GKSFRSYSVTVEFQNREVLICNHLLN-----RRLDEAREVFDQVPSPHVSLYTKMISGYT 77

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           RS+R  +AL+LF E+  R++    V+  S +S C   G +D    + + + +  +  +  
Sbjct: 78  RSNRLVDALNLFDEMPLRDV----VSWNSMISGCVECGDIDTAVKMFDEMPERSVVSW-- 131

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
             TA+++   + G +D A  +F  M  KD  AW+AM+  Y   G+   ++ +F++M +  
Sbjct: 132 --TAMVNGCFRFGMVDQAERLFCQMPVKDIAAWNAMVHGYLQFGKVDDALKLFKQMPRKN 189

Query: 322 VSPDEITFLGL 332
           V        GL
Sbjct: 190 VISWTTMICGL 200



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 89/187 (47%), Gaps = 13/187 (6%)

Query: 20  NTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N     S L  C++   L   K+IH V +K  L     V   L+        + ++  A 
Sbjct: 325 NQSTFASGLNSCSALGTLDWGKEIHGVAVKLGLGTVAFVGNSLV---VMYSDSGNVNDAV 381

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +F  I +  IV +N++  G ++      A  +F +++     PD+ +F  LL AC+  G
Sbjct: 382 SVFIEIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCG 441

Query: 137 AEALEEGKQLHCFAIKLGLN---SNLYVCTTLINLYAECSDVEAARRIFEN-ISEPCVVS 192
              L++G++L  + I  GLN     +   T ++++   C +++ A ++ E+ + +P  + 
Sbjct: 442 --FLQKGRKLF-YYISSGLNHIDRKIQHYTCMVDILGRCGELKEAEKLIESMVVKPNEMV 498

Query: 193 YNAIITA 199
           + A+++A
Sbjct: 499 WLALLSA 505


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 200/522 (38%), Positives = 296/522 (56%), Gaps = 38/522 (7%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLL-PDDYSFPSLLK 130
           M+ A   F+++ E DIV +N+M  G+++    +RA+ +F ++L   LL PD ++  S+L 
Sbjct: 228 MDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLS 287

Query: 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR---------- 180
           ACA +  E L  GKQ+H   +  G + +  V   LI++Y+ C  VE ARR          
Sbjct: 288 ACANL--EKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDL 345

Query: 181 -----------------------IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
                                  IF ++ +  VV++ A+I  Y +     EA++LFR + 
Sbjct: 346 KIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMV 405

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
               +P   T+ + LS  + L SL  GK IH    K G    V V+ ALI M+AK G + 
Sbjct: 406 GGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNIT 465

Query: 278 DAVSVFDNMS-GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
            A   FD +   +DT +W++MI+A A HG   +++ +FE M+   + PD IT++G+  AC
Sbjct: 466 SASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSAC 525

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           +H GLV++G  YF  M+D   I+P + HY CMVDL GRAG L EA  FI+++PI+   + 
Sbjct: 526 THAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVT 585

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
           W +LLS+C  H N+ L K   ER+  L+  + G Y  L+NL +  G+WE+   +RK MKD
Sbjct: 586 WGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKD 645

Query: 457 RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHG 516
             V K  G S IEV + V  F   DG H    ++   + ++  E+K +GYVPDT+ V H 
Sbjct: 646 GRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLH- 704

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           D+E+E KE  LR+HSEKLAI FGL++TP  TT+R++KNLRVC
Sbjct: 705 DLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVC 746



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 109/449 (24%), Positives = 194/449 (43%), Gaps = 77/449 (17%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
            FD++P+ D V + TM  GY       +AI +  +++  G+ P  ++  ++L + A    
Sbjct: 102 FFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVA--AT 159

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
             +E GK++H F +KLGL  N+ V  +L+N+YA+C D   A+ +F+ +    + S+NA+I
Sbjct: 160 RCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMI 219

Query: 198 TAYARSSRPNEALSLFRELQERN--------------------------------LKPTD 225
             + +  + + A++ F ++ ER+                                L P  
Sbjct: 220 ALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDR 279

Query: 226 VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC------------ 273
            T+ S LS+CA L  L +GK IH +I   G D    V  ALI M+++C            
Sbjct: 280 FTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQ 339

Query: 274 ---------------------GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
                                G ++ A ++F ++  +D  AW+AMIV Y  HG   ++I 
Sbjct: 340 RGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAIN 399

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           +F  M+     P+  T   +L   S    +  G    +    K G +  +     ++ + 
Sbjct: 400 LFRSMVGGGQRPNSYTLAAMLSVASSLASLSHG-KQIHGSAVKSGEIYSVSVSNALITMY 458

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG---- 428
            +AG +  A R  D +  +   + W +++ + + H   G A++ +E +FE     G    
Sbjct: 459 AKAGNITSASRAFDLIRCERDTVSWTSMIIALAQH---GHAEEALE-LFETMLMEGLRPD 514

Query: 429 -GDYVILSNLCARAGRWEDVDYLRKLMKD 456
              YV + + C  AG          +MKD
Sbjct: 515 HITYVGVFSACTHAGLVNQGRQYFDMMKD 543



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 168/388 (43%), Gaps = 77/388 (19%)

Query: 120 PDDYSFPSLLKACACVGAEALEE------GKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
           P   S  +LL+ C  +  +++ +       + +HC  IK GL  ++Y+   L+N+Y++  
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN------------- 220
               AR++F+ +      S+N +++AY++    +     F +L +R+             
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKN 123

Query: 221 ------------------LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
                             ++PT  T+ + L+S A    ++ GK +H +I K GL   V V
Sbjct: 124 IGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSV 183

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
           + +L++M+AKCG    A  VFD M  +D  +W+AMI  +   GQ   ++  FE+M +  +
Sbjct: 184 SNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDI 243

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
                                  WN          ++ G    G   DL  RA  LD   
Sbjct: 244 VT---------------------WN---------SMISGFNQRG--YDL--RA--LDIFS 267

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
           + + +  +        ++LS+C++   L + KQ+   I        G  ++L+ L +   
Sbjct: 268 KMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISG--IVLNALISMYS 325

Query: 443 RWEDVDYLRKLMKDRGV--LKVPGCSSI 468
           R   V+  R+L++ RG   LK+ G +++
Sbjct: 326 RCGGVETARRLIEQRGTKDLKIEGFTAL 353


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 202/554 (36%), Positives = 313/554 (56%), Gaps = 14/554 (2%)

Query: 16  KLCTNTPNALSLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLIN-------FCTQ 65
           +L  N    ++LLP       L Q   +HA  I+  L  + N  +KL +           
Sbjct: 108 RLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDM 167

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL-LPDDYS 124
                S+ +A  +FD +P  + V ++ +  G+       +A  LF  +L  GL      S
Sbjct: 168 YAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS 227

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
             S L+ACA +  + L  G+QLH    K G++++L    +L+++YA+   ++ A  +F+ 
Sbjct: 228 IASALRACASL--DHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDE 285

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
           ++    VSY+A+++ Y ++ R  EA  +F+++Q  N++P   TM+S + +C+ L +L  G
Sbjct: 286 MAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHG 345

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
           +  H  +   GL     +  ALIDM+AKCGR+D +  VF+ M  +D  +W+ MI  Y  H
Sbjct: 346 RCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIH 405

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364
           G G ++  +F EM      PD +TF+ LL ACSH+GLV EG ++F+ M   YG+ P ++H
Sbjct: 406 GLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEH 465

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
           Y CMVDLL R G LDEAY FI  +P+++   +W  LL +C  + N+ L K+V   I EL 
Sbjct: 466 YICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELG 525

Query: 425 DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVH 484
               G++V+LSN+ + AGR+++   +R + K +G  K PGCS IE+N  +  F  GD  H
Sbjct: 526 PEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSH 585

Query: 485 SYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTP 544
             S ++ + LD ++  +K +GY PDTS V   D+E+EEKE AL  HSEKLAI +G+L+  
Sbjct: 586 PQSPEIYRELDNILVGIKKLGYQPDTSFVLQ-DLEEEEKEKALICHSEKLAIAYGILSLS 644

Query: 545 PGTTIRVVKNLRVC 558
              TI V KNLRVC
Sbjct: 645 EDKTIFVTKNLRVC 658



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 209/424 (49%), Gaps = 31/424 (7%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           + IH   I   LQ DL V T L++   +        H   +F  +P  D+V +N M  GY
Sbjct: 30  RAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAH---IFATMPARDLVAWNAMLAGY 86

Query: 98  SRSKTPIRAI--FLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155
           +       A+   L +++    L P+  +  +LL   A  G  AL +G  +H + I+  L
Sbjct: 87  AHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQG--ALAQGTSVHAYCIRACL 144

Query: 156 NSN----------LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSR 205
           + N          + + T L+++YA+C  +  ARR+F+ +     V+++A+I  +   SR
Sbjct: 145 HPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSR 204

Query: 206 PNEALSLFRELQERN---LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
             +A  LF+ +  +    L PT +   SAL +CA L  L +G+ +H  + K G+   +  
Sbjct: 205 MTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQLHALLAKSGVHADLTA 262

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
             +L+ M+AK G +D A+++FD M+ KDT ++SA++  Y  +G+  ++ L+F++M    V
Sbjct: 263 GNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNV 322

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            PD  T + L+ ACSH   +  G     S+  + G+         ++D+  + GR+D + 
Sbjct: 323 EPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASETSICNALIDMYAKCGRIDLSR 381

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD----SHGGDYVILSNLC 438
           +  + +P +   + W T+++    H   GL K+      E+++      G  ++ L + C
Sbjct: 382 QVFNMMPSRDI-VSWNTMIAGYGIH---GLGKEATALFLEMNNLGFPPDGVTFICLLSAC 437

Query: 439 ARAG 442
           + +G
Sbjct: 438 SHSG 441



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 148/296 (50%), Gaps = 20/296 (6%)

Query: 113 LLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172
           +L   + P++Y+FP  LKAC+ +       G+ +H  AI  GL ++L+V T L+++Y +C
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADH--HCGRAIHRHAIHAGLQADLFVSTALLDMYVKC 58

Query: 173 SDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALS--LFRELQERNLKPTDVTMLS 230
           + +  A  IF  +    +V++NA++  YA     + A++  L  ++Q   L+P   T+++
Sbjct: 59  ACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVA 118

Query: 231 ALSSCALLGSLDLGKWIHEYI----------KKYGLDKYVKVNTALIDMHAKCGRLDDAV 280
            L   A  G+L  G  +H Y            K  L   V + TAL+DM+AKCG L  A 
Sbjct: 119 LLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYAR 178

Query: 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ---VSPDEITFLGLLYACS 337
            VFD M  ++   WSA+I  +    +  ++ L+F+ M+      +SP  I     L AC+
Sbjct: 179 RVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACA 236

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
               +  G    +++  K G+   +     ++ +  +AG +D+A    DE+ +K T
Sbjct: 237 SLDHLRMG-EQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDT 291



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 12/195 (6%)

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              + P + T   AL +C+ L     G+ IH +    GL   + V+TAL+DM+ KC  L 
Sbjct: 3   RHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLP 62

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI--LMFEEMMKAQVSPDEITFLGLLYA 335
           DA  +F  M  +D  AW+AM+  YA HG  H ++  L+  +M   ++ P+  T + LL  
Sbjct: 63  DAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPL 122

Query: 336 CSHTGLVDEGWN-YFYSMR--------DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
            +  G + +G + + Y +R         K  +  G+     ++D+  + G L  A R  D
Sbjct: 123 LAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFD 182

Query: 387 ELPIKSTPILWRTLL 401
            +P ++  + W  L+
Sbjct: 183 AMPARN-EVTWSALI 196


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 192/528 (36%), Positives = 295/528 (55%), Gaps = 9/528 (1%)

Query: 31  CTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLF 90
           C S    ++IHA   K+ L  D  +  +L+   T        E A  LFD +P  D+V +
Sbjct: 52  CPSISNCREIHARVFKSLLYRDGFIGDQLV---TCYNKLGYAEDALKLFDDMPHKDLVSW 108

Query: 91  NTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFA 150
           N++  G+SR        F  ++   S + P++ +  S++ AC+     AL+ GK +H F 
Sbjct: 109 NSLISGFSRCLHMSLTAFYTMKFEMS-VKPNEVTILSMISACS----GALDAGKYIHGFG 163

Query: 151 IKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEAL 210
           IK+G    + V  +LIN+Y +  D+ +A R+FE I +P  VS+N+II A   +    E +
Sbjct: 164 IKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGI 223

Query: 211 SLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270
             F +++   ++  + T+L+ L +C  LG   L + IH  +   G    + + TAL+D +
Sbjct: 224 DYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTY 283

Query: 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           AK GRL  +  VF  +   D  AW+AM+  YA HG G ++I +FE M    + PD +TF 
Sbjct: 284 AKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFT 343

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
            LL ACSH+GLV+EG +YF  M + YGI P + HY CMVDLLGR G L++AY  I  +P+
Sbjct: 344 HLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPM 403

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL 450
           +    +W  LL +C  H N+ L K+V E +  ++     +Y++LSN+ + +  W+D   +
Sbjct: 404 EPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKV 463

Query: 451 RKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT 510
           R L+K+RG+ + PG SSIE  N    FF GD  H  +  +   L+EL+ +++  GY   T
Sbjct: 464 RALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKT 523

Query: 511 SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             V   D+E+E KE  +  HSEKLAI FGLL +  G  + + KNLR+C
Sbjct: 524 EYVLQ-DVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRIC 570


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 194/557 (34%), Positives = 305/557 (54%), Gaps = 42/557 (7%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           ++IHA  +      DL V T LIN   +     S   A  +FD++ + D+V +N M   Y
Sbjct: 227 RKIHAEIVANGFDTDLVVATALINMYGK---CGSSHEAREVFDKMKKRDMVSWNVMIGCY 283

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
             +     A+ L+ +L   G      +F S+L AC+ V  +AL +G+ +H   ++ GL+S
Sbjct: 284 VLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSV--KALAQGRLVHSHILERGLDS 341

Query: 158 NLYVCTTLINLYAECS----------------------------------DVEAARRIFE 183
            + V T L+N+YA+C                                   D   AR++F+
Sbjct: 342 EVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFD 401

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQ-ERNLKPTDVTMLSALSSCALLGSLD 242
            +     +S+NA+IT Y ++     A+ +FRE+     LKP  VT ++ L +CA LG L 
Sbjct: 402 RLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLS 461

Query: 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYA 302
             K +H  I +  L+  V V   LI+M+A+CG L++A  +F     K   +W+AM+ A++
Sbjct: 462 EVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFS 521

Query: 303 THGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI 362
            +G+  +++ +F+EM    V PD++T+  +L+ C+H G +++GW YF  M + + + P  
Sbjct: 522 QYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTA 581

Query: 363 KHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
            H+  MVDLLGR+GRL +A   ++ +P +  P+ W T L++C  H  L L +   ER++E
Sbjct: 582 DHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYE 641

Query: 423 LDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDG 482
           LD S    Y+ +SN+ A  G WE V  +RK M++RG+ K+PG S IEV+  + EF SG  
Sbjct: 642 LDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGK 701

Query: 483 VHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLN 542
            H  + ++ + L  L   ++  GYVPDT  V H D+ + EKE  L YHSEK+AI FGL++
Sbjct: 702 YHPRTDEICEELTRLHGLMRAAGYVPDTKAVLH-DVSEGEKETMLLYHSEKMAIAFGLVS 760

Query: 543 T-PPGTTIRVVKNLRVC 558
           +   G  IRVVKNLRVC
Sbjct: 761 SRGSGEPIRVVKNLRVC 777



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 208/439 (47%), Gaps = 43/439 (9%)

Query: 17  LCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           L T+    +S+L  C+S    ++IH     + L +  ++   L+   T      S+  A 
Sbjct: 106 LGTDHVTFVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALV---TMYARFGSVGDAK 162

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +F  +   D   +N +   +S+S     A+ +F E+    + P+  ++ +++   +   
Sbjct: 163 RMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM-KCDVKPNSTTYINVISGFST-- 219

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
            E L EG+++H   +  G +++L V T LIN+Y +C     AR +F+ + +  +VS+N +
Sbjct: 220 PEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVM 279

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           I  Y  +   +EAL L+++L     K T  T +S L +C+ + +L  G+ +H +I + GL
Sbjct: 280 IGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGL 339

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH-------- 308
           D  V V TAL++M+AKCG L++A  VF+ M  +D  AWS +I AYA++G G         
Sbjct: 340 DSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKV 399

Query: 309 --------------------------KSILMFEEMMKAQ-VSPDEITFLGLLYACSHTGL 341
                                      ++ +F EM  A  + PD +TF+ +L AC+  G 
Sbjct: 400 FDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGR 459

Query: 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
           + E     ++   +  +   +     ++++  R G L+EA R       K T + W  ++
Sbjct: 460 LSEV-KALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEK-TVVSWTAMV 517

Query: 402 SSCSSHNNLGLAKQVIERI 420
           ++ S +     A  + + +
Sbjct: 518 AAFSQYGRYAEALDLFQEM 536



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 176/339 (51%), Gaps = 9/339 (2%)

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
           + ++V +N M   Y+++     A+ L+  +   GL  D  +F S+L AC+     +L +G
Sbjct: 72  QRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS-----SLAQG 126

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
           +++H      GL+S   +   L+ +YA    V  A+R+F+++      S+NA+I A+++S
Sbjct: 127 REIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQS 186

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
              + AL +F+E++  ++KP   T ++ +S  +    L  G+ IH  I   G D  + V 
Sbjct: 187 GDWSGALRIFKEMK-CDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVA 245

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
           TALI+M+ KCG   +A  VFD M  +D  +W+ MI  Y  +G  H+++ +++++      
Sbjct: 246 TALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFK 305

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
             + TF+ +L ACS    + +G    +S   + G+   +     +V++  + G L+EA +
Sbjct: 306 RTKATFVSILGACSSVKALAQG-RLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARK 364

Query: 384 FIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
             + +  +   + W TL+ + +S N  G   +   ++F+
Sbjct: 365 VFNAMKNRD-AVAWSTLIGAYAS-NGYGKDARKARKVFD 401



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 173/376 (46%), Gaps = 46/376 (12%)

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179
           PD+ +F ++L  C+C     + EG+ LH          +  V   LI++Y +C  +  AR
Sbjct: 5   PDNVTFLTVL--CSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDAR 62

Query: 180 RIFENIS--EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL 237
            +FE++   +  VVS+NA+I AYA++    EAL L+  +  + L    VT +S L +C+ 
Sbjct: 63  SVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS- 121

Query: 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297
             SL  G+ IH  +   GLD +  +  AL+ M+A+ G + DA  +F ++  +D  +W+A+
Sbjct: 122 --SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAV 179

Query: 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS-----------HTGLVDEGW 346
           I+A++  G    ++ +F+E MK  V P+  T++ ++   S           H  +V  G+
Sbjct: 180 ILAHSQSGDWSGALRIFKE-MKCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGF 238

Query: 347 N------------------------YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
           +                         F  M+ K  +V      GC V L G      E Y
Sbjct: 239 DTDLVVATALINMYGKCGSSHEAREVFDKMK-KRDMVSWNVMIGCYV-LNGDFHEALELY 296

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD-DSHGGDYVILSNLCARA 441
           + +D    K T   + ++L +CSS   L   + V   I E   DS       L N+ A+ 
Sbjct: 297 QKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKC 356

Query: 442 GRWEDVDYLRKLMKDR 457
           G  E+   +   MK+R
Sbjct: 357 GSLEEARKVFNAMKNR 372



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 8/173 (4%)

Query: 222 KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVS 281
           +P +VT L+ L SC+  G +  G+ +HE I+    ++   V  ALI M+ KC  L DA S
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 282 VFDNMS--GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
           VF++M    ++  +W+AMI AYA +G   ++++++  M    +  D +TF+ +L ACS  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 340 GLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIK 391
               E  N  FYS  D +  +        +V +  R G + +A R    L  +
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLA-----NALVTMYARFGSVGDAKRMFQSLQTR 171


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 182/491 (37%), Positives = 289/491 (58%), Gaps = 15/491 (3%)

Query: 72  MEHAHLLFDRIPEPDIVLFNT----MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPS 127
           ++ A  LFDR+PE ++V + T    +A    R +  +R     V +   G+ P+ Y+F S
Sbjct: 131 LDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALR---FLVAMWRDGVAPNAYTFSS 187

Query: 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE 187
           +L AC   G  A      LH   +K+GL+S+++V ++LI+ Y +  D++  RR+F+ +  
Sbjct: 188 VLGACGTPGVLA-----ALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVT 242

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
             +V +N+II  +A+S     A+ LF  +++        T+ S L +C  +  L+ G+ +
Sbjct: 243 RDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQV 302

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQG 307
           H ++ KY  D  + ++ AL+DM+ KCG L+DA ++F  M  +D  +WS MI   A +G+ 
Sbjct: 303 HAHVLKYERD--LILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKS 360

Query: 308 HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367
            +++ +F+ M    V+P+ IT +G+L+ACSH GLV++GW YF SM+  +GI P  +H+ C
Sbjct: 361 AEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHHNC 420

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
           MVDLLGRAG+LDEA  FI ++ ++   ++WRTLL +C  H +  LA      I +L+   
Sbjct: 421 MVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYAAREILKLEPDD 480

Query: 428 GGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYS 487
            G  V+LSN  A   +W D +   K M+DRG+ K PG S IE+   V  F +GD  H  S
Sbjct: 481 QGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHVHVFIAGDLSHPCS 540

Query: 488 TDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGT 547
             + + L+ L+  +  +GYVP T  V   D+  E+KE  L+YHSEK+AI FG ++   G 
Sbjct: 541 DTIVQELNRLIGRISALGYVPQTEFVLQ-DLAIEQKEDLLKYHSEKMAIAFGTMHAVGGK 599

Query: 548 TIRVVKNLRVC 558
            IR++KNLR+C
Sbjct: 600 PIRIMKNLRIC 610



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 164/311 (52%), Gaps = 14/311 (4%)

Query: 21  TPNAL---SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHL 77
            PNA    S+L  C +   L  +HA T+K  L +D+ V + LI+   +      ++    
Sbjct: 179 APNAYTFSSVLGACGTPGVLAALHASTVKVGLDSDVFVRSSLIDAYMK---LGDLDGGRR 235

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           +FD +   D+V++N++  G+++S   + AI LF+ + ++G   +  +  S+L+  AC G 
Sbjct: 236 VFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLR--ACTGM 293

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
             LE G+Q+H   +K     +L +   L+++Y +C  +E A  +F  + +  V+S++ +I
Sbjct: 294 VMLEAGRQVHAHVLK--YERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMI 351

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK-YGL 256
           +  A++ +  EAL +F  ++   + P  +TM+  L +C+  G ++ G +    +KK +G+
Sbjct: 352 SGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGI 411

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHGQGHKSILMFE 315
               + +  ++D+  + G+LD+AV    +M+ + D   W  ++ A   H  G+ +     
Sbjct: 412 QPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYAAR 471

Query: 316 EMMKAQVSPDE 326
           E++K  + PD+
Sbjct: 472 EILK--LEPDD 480



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 178/409 (43%), Gaps = 45/409 (11%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP----------------D 121
           LF R P   +      +R       P  ++ +F  L   G  P                D
Sbjct: 12  LFKRPPRNRLAATRRSSRPVHTQPPPHPSLAIFSRLCVEGPFPAALALLPDLAAAGLRAD 71

Query: 122 DYSFPSLLKACACVGAEA--------LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
             S   L+K C   G           +E   QL  ++   G    ++V  +L+++YA+  
Sbjct: 72  PVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSG--GAGGGIFVSNSLVSMYAKFG 129

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARS-SRPNEALSLFRELQERNLKPTDVTMLSAL 232
            ++ A R+F+ + E  VV++  ++ A A +  R  EAL     +    + P   T  S L
Sbjct: 130 LLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSVL 189

Query: 233 SSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ 292
            +C   G L     +H    K GLD  V V ++LID + K G LD    VFD M  +D  
Sbjct: 190 GACGTPGVLAA---LHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLV 246

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYS 351
            W+++I  +A  G G  +I +F  M  A  S ++ T   +L AC+   +++ G   + + 
Sbjct: 247 VWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHV 306

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
           ++ +  ++     +  ++D+  + G L++A      +P +   I W T++S  + +   G
Sbjct: 307 LKYERDLIL----HNALLDMYCKCGSLEDAEALFHRMPQRDV-ISWSTMISGLAQN---G 358

Query: 412 LAKQVIERIFELDDSHG--GDYVILSNL---CARAGRWEDVDYLRKLMK 455
            + + + R+F+L  S G   + + +  +   C+ AG  ED  Y  + MK
Sbjct: 359 KSAEAL-RVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMK 406



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 102/239 (42%), Gaps = 45/239 (18%)

Query: 19  TNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEH 74
            N     S+L  CT    L   +Q+HA  +K   + DL +   L++ +C       S+E 
Sbjct: 278 ANQGTLTSVLRACTGMVMLEAGRQVHAHVLK--YERDLILHNALLDMYCK----CGSLED 331

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  LF R+P+ D++ ++TM  G +++     A+ +F  + + G+ P+  +   +L AC+ 
Sbjct: 332 AEALFHRMPQRDVISWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSH 391

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
            G   +E+G                Y   ++  L+                 +P    +N
Sbjct: 392 AG--LVEDG---------------WYYFRSMKKLFG---------------IQPEREHHN 419

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
            ++    R+ + +EA+   R++   NL+P  V   + L +C +  S +L  +    I K
Sbjct: 420 CMVDLLGRAGKLDEAVEFIRDM---NLEPDAVIWRTLLGACRMHKSGNLAAYAAREILK 475


>gi|242069679|ref|XP_002450116.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
 gi|241935959|gb|EES09104.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
          Length = 597

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 189/508 (37%), Positives = 294/508 (57%), Gaps = 7/508 (1%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP-DIVLFNTMARGY 97
           Q+HA ++K    ++ +VLT L+N   +      +  A   FD + +P   V +  +   Y
Sbjct: 96  QLHARSLKLPSHSNPHVLTSLLNLYAR---CGRLHDAQKAFDEMRQPPSTVSWTALITAY 152

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
             +   + AI +      SG+ PD ++   +L ACA V    L  G+++   A K G+  
Sbjct: 153 MDAGRGLEAIGVARSAFASGVRPDSFTAVRVLTACARVAD--LVTGEEVWTAAEKEGIAG 210

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           N++V T  ++LY +C +++ AR +F+ +    VV++ A++  YA +  P EAL LF  +Q
Sbjct: 211 NVFVATAAVDLYVKCGEMDKARGVFDKMKNKDVVAWGAMVGGYASNGHPREALELFFAMQ 270

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              ++P   T+  ALS+C  LG+LDLG+ +   ++   +     + TALIDM+AKCG   
Sbjct: 271 VEGMRPDCYTVAGALSACTRLGALDLGRRVVGMLQWDEVLGNPVLGTALIDMYAKCGSTG 330

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           +A  VF  M  +D   W+AMI+     G    +  +  +M K+ ++ ++ TF+GLL +C+
Sbjct: 331 EAWMVFQKMRNRDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGMTLNDNTFIGLLCSCT 390

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           HTGLV +G  YF +M   Y I P I+HYG MVDLL RAG L EA++ I ++P+++  ++W
Sbjct: 391 HTGLVKDGRRYFRNMTQLYHIRPRIEHYGIMVDLLSRAGLLQEAHQLIQDMPMEANAVVW 450

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             LL  C  H N  LA+ V++++ +L+  + G+YV+LSN+ + +GRWED   LR  MK +
Sbjct: 451 GALLGGCKIHRNADLAEHVLKQLIQLEPWNSGNYVVLSNIYSNSGRWEDAAKLRLEMKAK 510

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           GV KVP  S +E++  V EF  GD  H  S  +   LDEL  E+K +GY P T +V   D
Sbjct: 511 GVEKVPASSWVELDGKVHEFHVGDKSHPLSDQIYAKLDELGMEMKAMGYKPSTEVVMF-D 569

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPP 545
           +E+EEKE  L +HSEK+AI F LL T P
Sbjct: 570 IENEEKEHTLVHHSEKIAIAFSLLTTEP 597



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 149/284 (52%), Gaps = 6/284 (2%)

Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179
           P   +FP  +K+ + +  + L  G QLH  ++KL  +SN +V T+L+NLYA C  +  A+
Sbjct: 72  PSHLTFPFAIKSASRL-PDPLTAGAQLHARSLKLPSHSNPHVLTSLLNLYARCGRLHDAQ 130

Query: 180 RIFENISE-PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL 238
           + F+ + + P  VS+ A+ITAY  + R  EA+ + R      ++P   T +  L++CA +
Sbjct: 131 KAFDEMRQPPSTVSWTALITAYMDAGRGLEAIGVARSAFASGVRPDSFTAVRVLTACARV 190

Query: 239 GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMI 298
             L  G+ +    +K G+   V V TA +D++ KCG +D A  VFD M  KD  AW AM+
Sbjct: 191 ADLVTGEEVWTAAEKEGIAGNVFVATAAVDLYVKCGEMDKARGVFDKMKNKDVVAWGAMV 250

Query: 299 VAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGI 358
             YA++G   +++ +F  M    + PD  T  G L AC+  G +D G      +  ++  
Sbjct: 251 GGYASNGHPREALELFFAMQVEGMRPDCYTVAGALSACTRLGALDLGRRVVGML--QWDE 308

Query: 359 VPGIKHYG-CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
           V G    G  ++D+  + G   EA+    ++  +   I+W  ++
Sbjct: 309 VLGNPVLGTALIDMYAKCGSTGEAWMVFQKMRNRDI-IVWNAMI 351


>gi|222632633|gb|EEE64765.1| hypothetical protein OsJ_19621 [Oryza sativa Japonica Group]
          Length = 656

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 177/425 (41%), Positives = 268/425 (63%), Gaps = 1/425 (0%)

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
           C   + +  G Q+H  A+K  L  N+YV + L+++Y +C     A R+FE + E  +VS+
Sbjct: 193 CASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSW 252

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
            AI+TAY ++    +AL LF +++   ++P + T   AL+SCA L +L  G  +     K
Sbjct: 253 TAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGACTMK 312

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
            G    + V  AL++M++K G ++DA  VF +M  +D  +W+++I+ YA HG+  +++  
Sbjct: 313 TGHWGLLPVCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEA 372

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           F +M+ A+  P  +TF+G+L AC+  GLVDEG+ Y   M  + G+ PG +HY CMV LL 
Sbjct: 373 FHDMLFAEEVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMVGLLC 432

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI 433
           R GRLDEA RFI+   I +  + WR+LLSSC  + N GL  +V E+IF+L     G YV+
Sbjct: 433 RVGRLDEAERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQLKPKDVGTYVL 492

Query: 434 LSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKA 493
           LSN+ A+A RW+ V  +R+LM++ GV K PG S I+V + V  F S D  H Y   + K 
Sbjct: 493 LSNMYAKANRWDGVVKVRRLMRELGVRKEPGVSWIQVGSEVHVFTSEDKKHPYMEQITKK 552

Query: 494 LDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVK 553
           L EL+ ++K++GYVP+ ++  H D+EDE+KE  L YHSEKLA+ FGL+ TP G  IR++K
Sbjct: 553 LQELIDKIKVIGYVPNIAVALH-DVEDEQKEEHLMYHSEKLALAFGLIRTPKGEAIRIMK 611

Query: 554 NLRVC 558
           N+R+C
Sbjct: 612 NVRIC 616



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 155/293 (52%), Gaps = 17/293 (5%)

Query: 27  LLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           +L  C S + +    Q+H   +K  L+ ++ V + L++   +         A+ +F+ +P
Sbjct: 189 VLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFP---HEANRVFEVLP 245

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
           E +IV +  +   Y++++    A+ LF+++   G+ P+++++   L +CA  G   L+ G
Sbjct: 246 EKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCA--GLATLKNG 303

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC--VVSYNAIITAYA 201
             L    +K G    L VC  L+N+Y++   VE ARR+F  +S PC  VVS+N+II  YA
Sbjct: 304 NALGACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVF--LSMPCRDVVSWNSIIIGYA 361

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEYIKKYGLDKYV 260
              R  EA+  F ++      P+ VT +  LS+CA LG +D G  +++  +K+ G+    
Sbjct: 362 HHGRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGK 421

Query: 261 KVNTALIDMHAKCGRLDDAVSVFD-NMSGKDTQAWSAMIVA---YATHGQGHK 309
           +  T ++ +  + GRLD+A    + N  G D  AW +++ +   Y  +G GH+
Sbjct: 422 EHYTCMVGLLCRVGRLDEAERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHR 474



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 176/396 (44%), Gaps = 58/396 (14%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +FD +P  + V  N +  GY+ S     A+ L   + + GL  ++Y   S + A A 
Sbjct: 69  ARQVFDAMPSRNPVSGNLLMSGYASSGRHRDALALL-RVADFGL--NEYVLSSAVAATAH 125

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           V   + + G+Q H +AIK GL  + YVC+ ++++Y +C+ ++ A +  +   E C    +
Sbjct: 126 V--RSYDMGRQCHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKYSKKHGEKCRAMGS 183

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
            +I                                  L  CA    + LG  +H    K 
Sbjct: 184 CVIC-------------------------------RVLGHCASTKEVVLGSQVHTQALKR 212

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
            L+  V V +AL+DM+ KC    +A  VF+ +  K+  +W+A++ AY  +     ++ +F
Sbjct: 213 RLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLF 272

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG------CM 368
            +M    V P+E T+   L +C+    +  G N   +   K G      H+G       +
Sbjct: 273 LDMEMEGVRPNEFTYAVALNSCAGLATLKNG-NALGACTMKTG------HWGLLPVCNAL 325

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIER----IFELD 424
           +++  ++G +++A R    +P +   + W +++   + H   G A++ +E     +F  +
Sbjct: 326 MNMYSKSGSVEDARRVFLSMPCRDV-VSWNSIIIGYAHH---GRAREAMEAFHDMLFAEE 381

Query: 425 DSHGGDYVILSNLCARAGRW-EDVDYLRKLMKDRGV 459
                 ++ + + CA+ G   E   YL  +MK+ GV
Sbjct: 382 VPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGV 417



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 83/160 (51%), Gaps = 5/160 (3%)

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
           L  GK +H   ++     ++     LI LY +C  +  AR++F+ +     VS N +++ 
Sbjct: 32  LSLGKAVHARVVRAA-RFDVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSG 90

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
           YA S R  +AL+L R     +    +  + SA+++ A + S D+G+  H Y  K GL ++
Sbjct: 91  YASSGRHRDALALLRVA---DFGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEH 147

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIV 299
             V +A++ M+ +C  +D+AV  +    G+  +A  + ++
Sbjct: 148 PYVCSAVLHMYCQCAHMDEAVK-YSKKHGEKCRAMGSCVI 186


>gi|357455473|ref|XP_003598017.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355487065|gb|AES68268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 479

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 180/456 (39%), Positives = 277/456 (60%), Gaps = 16/456 (3%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           ++L   C++   LKQIHA    T   ++L +  K+I FC     + +M +A  +FD+IP+
Sbjct: 16  MNLFNHCSTLNHLKQIHARIFLTGFNHNLILSGKIIMFCA---VSQNMNYALNVFDKIPK 72

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
           PD  L+NTM RG+  S T       F + +     PD+++F  +LK  A +    L  GK
Sbjct: 73  PDSFLWNTMIRGFGNSTTHSHNAIHFFKRMQLAHRPDNFTFSFILKIIARLRFVNL--GK 130

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           QLHC   K G  ++ YV  +LI++Y    D+E A ++FE + +P +VS+N+II  +    
Sbjct: 131 QLHCSLFKFGFENHTYVRNSLIHMYGMLKDIEIAHQLFEEMYQPNLVSWNSIIDCHVYCG 190

Query: 205 RPNEALSLFREL--QERN---LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
           + NEA+ LF ++  Q+ N   L+P   T++  LS+C  +GSLD G+ +H +++  G++ +
Sbjct: 191 KYNEAIDLFTKMVQQQHNGMELQPDHATLVVTLSACGAIGSLDFGRKVHSFVRD-GVNSF 249

Query: 260 ---VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
              + V  AL+DM+AKCG +++A   F NM  K+  +W+ MI+ +A+HG G +++ +F  
Sbjct: 250 GESISVFNALVDMYAKCGAVEEAYETFSNMKRKNVVSWNVMILGFASHGNGEEALALFTR 309

Query: 317 MMKAQVS-PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
           M+   V  PDEITFL +L ACSH GLVDEG  YF  M   Y I P IKHYGCMVDLLGRA
Sbjct: 310 MLHENVERPDEITFLCVLCACSHGGLVDEGRRYFEIMNRDYNIKPTIKHYGCMVDLLGRA 369

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
           G   EAY  I  +P++   I+WRTLL++C ++ N+ L ++V + + EL+  H  DYV+L+
Sbjct: 370 GLFVEAYELIKSMPVECNAIIWRTLLAACRNYGNVELGEKVRKHLMELEPDHSSDYVLLA 429

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLK-VPGCSSIEV 470
           N+ A  G+W ++   R+ M++R V K  PG S I +
Sbjct: 430 NMYASTGQWNEMSKERRSMQERRVRKPEPGNSFIGI 465


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 193/485 (39%), Positives = 287/485 (59%), Gaps = 36/485 (7%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           AH +FD     ++V +N M  GY+R K      F   ++L              L   AC
Sbjct: 161 AHKVFDMGDACEVVTWNIMLSGYNRVKQ-----FKISKML--------------LVLSAC 201

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI-NLYAECSDVEAARRIFENISEPCVVSY 193
              + LE GK  H F          Y+   ++ +++A C +++ A+ +F+N+    VVS+
Sbjct: 202 SKLKDLEWGK--HIFK---------YINGGIVEHMFAACGEMDEAQGVFDNMKTRDVVSW 250

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
            A+I  Y R +    AL+LFRE+Q  N+KP + TM+S L +CALLG+L+LG+W+   I K
Sbjct: 251 TAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGEWVKTCIDK 310

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
                   V  AL+DM+ KCG +  A  VF  M  KD   W+ MIV  A +G G +++ M
Sbjct: 311 NSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAM 370

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           F  M++A V+PDEIT++G+L AC    +VD+G ++F +M  ++GI P + HYGCMVDLLG
Sbjct: 371 FSNMIEASVTPDEITYIGVLCAC----MVDKGKSFFTNMTMQHGIKPTVTHYGCMVDLLG 426

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI 433
             G L+EA   I  +P+K   I+W + L +C  H N+ LA    ++I EL+  +G  YV+
Sbjct: 427 CVGCLEEALEVIVNMPVKPNSIVWGSPLGACRVHKNVQLADMAAKQILELEPENGAVYVL 486

Query: 434 LSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKA 493
           L N+ A + +WE++  +RKLM +RG+ K PGCS +E+N  V EF +GD  H  S ++   
Sbjct: 487 LCNIYAASKKWENLCQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAK 546

Query: 494 LDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVK 553
           L+ +++ L   GY PDTS V   D+ +E+KE AL  HSEKLAI + L+++ PG TIR+VK
Sbjct: 547 LENMMQGLIKAGYSPDTSEVFL-DLGEEDKETALYRHSEKLAIAYALISSGPGVTIRIVK 605

Query: 554 NLRVC 558
           NLR+C
Sbjct: 606 NLRMC 610



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/379 (31%), Positives = 196/379 (51%), Gaps = 36/379 (9%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           +SLL +C S   LKQIH+ TIK  L +D     ++I FC  + +  +M +AH +FD IP 
Sbjct: 11  ISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHES-GNMNYAHQVFDTIPH 69

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
           P + ++NTM +GYS+   P   + +++ +L S + PD ++FP  LK        AL+ GK
Sbjct: 70  PSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFT--RDMALQHGK 127

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC-VVSYNAIITAYARS 203
           +L   A+K G +SNL+V    I++++ C  V+ A ++F+ + + C VV++N +++ Y R 
Sbjct: 128 ELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFD-MGDACEVVTWNIMLSGYNRV 186

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
                          +  K +   ML  LS+C+ L  L+ GK I +YI           N
Sbjct: 187 ---------------KQFKISK--MLLVLSACSKLKDLEWGKHIFKYI-----------N 218

Query: 264 TALID-MHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
             +++ M A CG +D+A  VFDNM  +D  +W+AMI  Y        ++ +F EM  + V
Sbjct: 219 GGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNV 278

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            PDE T + +L AC+  G ++ G  +  +  DK            +VD+  + G + +A 
Sbjct: 279 KPDEFTMVSILIACALLGALELG-EWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAK 337

Query: 383 RFIDELPIKSTPILWRTLL 401
           +   E+  K     W T++
Sbjct: 338 KVFKEMYQKD-KFTWTTMI 355



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 140/329 (42%), Gaps = 39/329 (11%)

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA--ECSDVEAARRIFEN 184
           SLL+ C     +++ + KQ+H   IK+GL+S+      +I      E  ++  A ++F+ 
Sbjct: 12  SLLEKC-----KSMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDT 66

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
           I  P +  +N +I  Y++ S P   +S++  +   N+KP   T   +L       +L  G
Sbjct: 67  IPHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHG 126

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
           K +  +  K+G D  + V  A I M + CG +D A  VFD     +   W+ M+  Y   
Sbjct: 127 KELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNRV 186

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364
            Q   S ++                  +L ACS    ++ G + F     KY I  GI  
Sbjct: 187 KQFKISKMLL-----------------VLSACSKLKDLEWGKHIF-----KY-INGGIVE 223

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
           +     +    G +DEA    D +  +   + W  ++      N+  +    + R  ++ 
Sbjct: 224 H-----MFAACGEMDEAQGVFDNMKTRDV-VSWTAMIDGYLRMNHF-IGALALFREMQMS 276

Query: 425 DSHGGDYVILSNL--CARAGRWEDVDYLR 451
           +    ++ ++S L  CA  G  E  ++++
Sbjct: 277 NVKPDEFTMVSILIACALLGALELGEWVK 305


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 202/554 (36%), Positives = 313/554 (56%), Gaps = 14/554 (2%)

Query: 16  KLCTNTPNALSLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLIN-------FCTQ 65
           +L  N    ++LLP       L Q   +HA  I+  L  + N  +KL +           
Sbjct: 108 RLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDM 167

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL-LPDDYS 124
                S+ +A  +FD +P  + V ++ +  G+       +A  LF  +L  GL      S
Sbjct: 168 YAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS 227

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
             S L+ACA +  + L  G+QLH    K G++++L    +L+++YA+   ++ A  +F+ 
Sbjct: 228 IASALRACASL--DHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDE 285

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
           ++    VSY+A+++ Y ++ R  EA  +F+++Q  N++P   TM+S + +C+ L +L  G
Sbjct: 286 MAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHG 345

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
           +  H  +   GL     +  ALIDM+AKCGR+D +  VF+ M  +D  +W+ MI  Y  H
Sbjct: 346 RCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIH 405

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364
           G G ++  +F EM      PD +TF+ LL ACSH+GLV EG ++F+ M   YG+ P ++H
Sbjct: 406 GLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEH 465

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
           Y CMVDLL R G LDEAY FI  +P+++   +W  LL +C  + N+ L K+V   I EL 
Sbjct: 466 YICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELG 525

Query: 425 DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVH 484
               G++V+LSN+ + AGR+++   +R + K +G  K PGCS IE+N  +  F  GD  H
Sbjct: 526 PEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSH 585

Query: 485 SYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTP 544
             S ++ + LD ++  +K +GY PDTS V   D+E+EEKE AL  HSEKLAI +G+L+  
Sbjct: 586 PQSPEIYRELDNILVGIKKLGYQPDTSFVLQ-DLEEEEKEKALICHSEKLAIAYGILSLS 644

Query: 545 PGTTIRVVKNLRVC 558
              TI V KNLRVC
Sbjct: 645 EDKTIFVTKNLRVC 658



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 209/424 (49%), Gaps = 31/424 (7%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           + IH   I   LQ DL V T L++   +        H   +F  +P  D+V +N M  GY
Sbjct: 30  RAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAH---IFATMPARDLVAWNAMLAGY 86

Query: 98  SRSKTPIRAI--FLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155
           +       A+   L +++    L P+  +  +LL   A  G  AL +G  +H + I+  L
Sbjct: 87  AHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQG--ALAQGTSVHAYCIRACL 144

Query: 156 NSN----------LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSR 205
           + N          + + T L+++YA+C  +  ARR+F+ +     V+++A+I  +   SR
Sbjct: 145 HPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSR 204

Query: 206 PNEALSLFRELQERN---LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
             +A  LF+ +  +    L PT +   SAL +CA L  L +G+ +H  + K G+   +  
Sbjct: 205 MTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQLHALLAKSGVHADLTA 262

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
             +L+ M+AK G +D A+++FD M+ KDT ++SA++  Y  +G+  ++ L+F++M    V
Sbjct: 263 GNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNV 322

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            PD  T + L+ ACSH   +  G     S+  + G+         ++D+  + GR+D + 
Sbjct: 323 EPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASETSICNALIDMYAKCGRIDLSR 381

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD----SHGGDYVILSNLC 438
           +  + +P +   + W T+++    H   GL K+      E+++      G  ++ L + C
Sbjct: 382 QVFNMMPSRDI-VSWNTMIAGYGIH---GLGKEATALFLEMNNLGFPPDGVTFICLLSAC 437

Query: 439 ARAG 442
           + +G
Sbjct: 438 SHSG 441



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 148/296 (50%), Gaps = 20/296 (6%)

Query: 113 LLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172
           +L   + P++Y+FP  LKAC+ +       G+ +H  AI  GL ++L+V T L+++Y +C
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADH--HCGRAIHRHAIHAGLQADLFVSTALLDMYVKC 58

Query: 173 SDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALS--LFRELQERNLKPTDVTMLS 230
           + +  A  IF  +    +V++NA++  YA     + A++  L  ++Q   L+P   T+++
Sbjct: 59  ACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVA 118

Query: 231 ALSSCALLGSLDLGKWIHEYI----------KKYGLDKYVKVNTALIDMHAKCGRLDDAV 280
            L   A  G+L  G  +H Y            K  L   V + TAL+DM+AKCG L  A 
Sbjct: 119 LLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYAR 178

Query: 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ---VSPDEITFLGLLYACS 337
            VFD M  ++   WSA+I  +    +  ++ L+F+ M+      +SP  I     L AC+
Sbjct: 179 RVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACA 236

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
               +  G    +++  K G+   +     ++ +  +AG +D+A    DE+ +K T
Sbjct: 237 SLDHLRMG-EQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDT 291



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 12/195 (6%)

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              + P + T   AL +C+ L     G+ IH +    GL   + V+TAL+DM+ KC  L 
Sbjct: 3   RHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLP 62

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI--LMFEEMMKAQVSPDEITFLGLLYA 335
           DA  +F  M  +D  AW+AM+  YA HG  H ++  L+  +M   ++ P+  T + LL  
Sbjct: 63  DAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPL 122

Query: 336 CSHTGLVDEGWN-YFYSMR--------DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
            +  G + +G + + Y +R         K  +  G+     ++D+  + G L  A R  D
Sbjct: 123 LAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFD 182

Query: 387 ELPIKSTPILWRTLL 401
            +P ++  + W  L+
Sbjct: 183 AMPARN-EVTWSALI 196


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  345 bits (884), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 176/486 (36%), Positives = 282/486 (58%), Gaps = 11/486 (2%)

Query: 31  CTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLF 90
           C     +K+IH +  K  L+ D+ + + L+N   +      MEHA + F+ +P  D+VL+
Sbjct: 149 CLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLK---FGLMEHAQVAFEELPIRDVVLW 205

Query: 91  NTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFA 150
           N M  GY++       +  F  + +  ++P  ++   +L   A +G   L  G+ +H FA
Sbjct: 206 NAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGD--LNNGRIIHGFA 263

Query: 151 IKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEAL 210
           +K+G +S + V  +LI++Y +C  +E A  IFE + E  + S+N+I++ + +    +  L
Sbjct: 264 MKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTL 323

Query: 211 SLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK------VNT 264
            L   +    ++P  VT+ + L +C+ L +L  G+ IH Y+   GL K  K      +  
Sbjct: 324 RLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKN 383

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
           A+IDM+AKCG + DA  VF+ MS KD  +W+ MI+ Y  HG G++++ MF  M + Q+ P
Sbjct: 384 AVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKP 443

Query: 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF 384
           DE+TF+G+L ACSH G V +G N+   M+ KY + P I+HY C++D+LGRAG+LDEAY  
Sbjct: 444 DEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYEL 503

Query: 385 IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444
              +PI++ P++WR LL++C  H +  LA+   +R+FEL+  H G YV++SN+    GR+
Sbjct: 504 ALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRY 563

Query: 445 EDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMV 504
           E+V  +R  M+ + V K PGCS IE+ N V  F S D  H  +  +   L+ L   L+  
Sbjct: 564 EEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRAHPEAHSIYAGLNSLTARLREH 623

Query: 505 GYVPDT 510
           GYVPD 
Sbjct: 624 GYVPDV 629



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/400 (26%), Positives = 194/400 (48%), Gaps = 29/400 (7%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLF-DRIPEPDIVLFNTMARG 96
           K+IH+  +     N    +T LIN  ++    + M  A  +F D   E ++  FN +  G
Sbjct: 57  KEIHSYMLINGFLNSPLSITSLINMYSK---CNQMNFALSIFSDPTHEINVFAFNAIISG 113

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           +  +  P      + ++ N G++PD ++FP  +KAC  V      E K++H    K GL 
Sbjct: 114 FITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDV-----LEIKKIHGLLFKFGLE 168

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            ++++ + L+N Y +   +E A+  FE +    VV +NA++  YA+  +    L  FR +
Sbjct: 169 LDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRM 228

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
            + ++ P+  T+   LS  A++G L+ G+ IH +  K G D  V V+ +LIDM+ KC  +
Sbjct: 229 NDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCI 288

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           +DA+ +F+ M  KD  +W++++  +   G    ++ + + M+ A + PD +T   +L AC
Sbjct: 289 EDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPAC 348

Query: 337 SHTGLVDEGWNYFYSMRDKYG--IVPGIKHYG----------CMVDLLGRAGRLDEAYRF 384
           SH   +  G       R+ +G  IV G+   G           ++D+  + G + +A+  
Sbjct: 349 SHLAALMHG-------REIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLV 401

Query: 385 IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
            + +  K     W  ++     H     A ++  R+ E+ 
Sbjct: 402 FERMSNKDVAS-WNIMIMGYGMHGYGNEALEMFSRMCEVQ 440



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 137/274 (50%), Gaps = 11/274 (4%)

Query: 140 LEEGKQLHCFAIKLG-LNSNLYVCTTLINLYAECSDVEAARRIFEN-ISEPCVVSYNAII 197
           L +GK++H + +  G LNS L + T+LIN+Y++C+ +  A  IF +   E  V ++NAII
Sbjct: 53  LSKGKEIHSYMLINGFLNSPLSI-TSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAII 111

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
           + +  +  P E    +++++   + P   T   A+ +C  L  L++ K IH  + K+GL+
Sbjct: 112 SGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKAC--LDVLEIKK-IHGLLFKFGLE 168

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
             V + +AL++ + K G ++ A   F+ +  +D   W+AM+  YA  GQ    +  F  M
Sbjct: 169 LDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRM 228

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
               V P   T  G+L   +  G ++ G    +    K G   G+     ++D+ G+   
Sbjct: 229 NDESVVPSRFTVTGVLSVFAVMGDLNNG-RIIHGFAMKMGYDSGVAVSNSLIDMYGKCKC 287

Query: 378 LDEAYRFIDELPIKSTPILWRTLLS---SCSSHN 408
           +++A   I E+  +     W +++S    C  H+
Sbjct: 288 IEDALE-IFEMMREKDIFSWNSIVSVHEQCGDHD 320


>gi|242096366|ref|XP_002438673.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
 gi|241916896|gb|EER90040.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
          Length = 588

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 185/534 (34%), Positives = 309/534 (57%), Gaps = 30/534 (5%)

Query: 28  LPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           +  C   R L+   Q+HA  +    +  L + T+L+          ++E A  + D +PE
Sbjct: 42  ITECVERRALREGRQVHARMVAAGYRPALYLATRLV---IMYARCGALEDARNVLDGMPE 98

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
            ++V +  M  GYS+++ P +A  LF+ +L +G+                       + K
Sbjct: 99  RNVVSWTAMISGYSQNERPDQAWELFIMMLRAGI----------------------HQVK 136

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           Q+H FA+K     +++V ++L+++YA+  +++ ARR+F+ +    VVSY AI++ Y +  
Sbjct: 137 QVHAFAVKTNFELHMFVGSSLLDMYAKSENIQEARRVFDMLPARDVVSYTAILSGYTQLG 196

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
              EAL LFR L    ++   VT  + L++ + L S+D GK +H  I +  L  ++ +  
Sbjct: 197 LDEEALDLFRLLYNEGMQCNQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMALQN 256

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
           +LIDM++KCG+L  +  VFD+M  +   +W+AM++ Y  HG  H+ + +F  M   +V P
Sbjct: 257 SLIDMYSKCGKLLYSRRVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSMCD-EVKP 315

Query: 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF 384
           D +T L +L   SH GLVDEG + F  +  +   +   +HYGC++DLLGR+G+L +A   
Sbjct: 316 DSVTLLAVLSGYSHGGLVDEGLDMFDHIVKEQSTLLNTEHYGCVIDLLGRSGQLQKALNL 375

Query: 385 IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444
           I+++P + T  +W +LL +C  H N+ + + V +++ +++  + G+YVILSN+ A AG W
Sbjct: 376 IEKMPFQPTRAIWGSLLGACRVHTNVHVGEFVAQKLLDIEPENAGNYVILSNIYAAAGMW 435

Query: 445 EDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMV 504
           +DV  +RKLM  + V+K PG S + ++ V+  F S +  H    D+   + E+   +K  
Sbjct: 436 KDVFRVRKLMLKKTVIKEPGRSWMILDKVIHTFHSCERFHPRKEDINAKIKEIYVAIKAA 495

Query: 505 GYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           G+VPD S V H D++DE+KE  L  HSEKLAITFGL++TP   TI+V+KNLR+C
Sbjct: 496 GFVPDLSCVLH-DVDDEQKERMLLGHSEKLAITFGLMSTPSDLTIQVMKNLRIC 548



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 52/92 (56%)

Query: 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290
           A++ C    +L  G+ +H  +   G    + + T L+ M+A+CG L+DA +V D M  ++
Sbjct: 41  AITECVERRALREGRQVHARMVAAGYRPALYLATRLVIMYARCGALEDARNVLDGMPERN 100

Query: 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
             +W+AMI  Y+ + +  ++  +F  M++A +
Sbjct: 101 VVSWTAMISGYSQNERPDQAWELFIMMLRAGI 132


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 196/523 (37%), Positives = 295/523 (56%), Gaps = 12/523 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE-PDIVLFNTMARG 96
           KQ+H   IK     DLN+ T L+         S ++ A  LF  +    ++V +  +  G
Sbjct: 314 KQLHCQVIKNGSDFDLNIKTALM---VAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISG 370

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           Y ++    RA+ LF ++   G+ P+ +++ ++L A A V         Q+H   +K    
Sbjct: 371 YVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPS------QIHALVVKTNYE 424

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
           ++  V T L + Y++  D   A +IFE I E  +V+++A+++ YA+      A+ +F +L
Sbjct: 425 NSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQL 484

Query: 217 QERNLKPTDVTMLSALSSCAL-LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
            +  ++P + T  S L++CA    S++ GK  H    K G    + V++AL+ M+AK G 
Sbjct: 485 AKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGN 544

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           ++ A  VF     +D  +W++MI  YA HG G KS+ +FEEM    +  D ITF+G++ A
Sbjct: 545 IESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISA 604

Query: 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
           C+H GLV+EG  YF  M   Y IVP ++HY CMVDL  RAG L++A   I+++P  +   
Sbjct: 605 CTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGAT 664

Query: 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455
           +WRTLL++C  H N+ L +   E++  L       YV+LSN+ A AG W++   +RKLM 
Sbjct: 665 IWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMD 724

Query: 456 DRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHH 515
            + V K  G S IEV N    F +GD  H  S  +   L+EL   LK  GY PDT  V H
Sbjct: 725 MKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLH 784

Query: 516 GDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            D+E+E KE+ L  HSE+LAI FGL+ TPPGT I++VKNLRVC
Sbjct: 785 -DVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVC 826



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 195/393 (49%), Gaps = 26/393 (6%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           KQ+H   IK     D++V T L++   +   T S+E    +FD +   ++V + ++  GY
Sbjct: 112 KQVHCQCIKCGFVEDVSVGTSLVDMYMK---TESVEDGERVFDEMRVKNVVSWTSLLAGY 168

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
            ++    +A+ LF ++   G+ P+ ++F ++L   A  GA  +E+G Q+H   IK GL+S
Sbjct: 169 RQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGA--VEKGVQVHTMVIKSGLDS 226

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            ++V  +++N+Y++   V  A+ +F+++     VS+N++I  +  +    EA  LF  ++
Sbjct: 227 TIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMR 286

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              +K T     + +  CA +  +   K +H  + K G D  + + TAL+  ++KC  +D
Sbjct: 287 LEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEID 346

Query: 278 DAVSVFDNMSG-KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           DA  +F  M G ++  +W+A+I  Y  +G+  +++ +F +M +  V P+  T+  +L A 
Sbjct: 347 DAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTA- 405

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA---YRFIDELPIKST 393
                V     +   ++  Y   P +     + D   + G  +EA   +  IDE  I   
Sbjct: 406 --NAAVSPSQIHALVVKTNYENSPSVGT--ALSDSYSKIGDANEAAKIFELIDEKDI--- 458

Query: 394 PILWRTLLSSCSSHNN--------LGLAKQVIE 418
            + W  +LS  +   +        L LAK+ +E
Sbjct: 459 -VAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVE 490



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 139/265 (52%), Gaps = 2/265 (0%)

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
           H+  LFD  P+  +   N +   +SR+     A+ LF+ L  SG   D  S   +LK C 
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCG 103

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
           C+    +  GKQ+HC  IK G   ++ V T+L+++Y +   VE   R+F+ +    VVS+
Sbjct: 104 CLFDRIV--GKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSW 161

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
            +++  Y ++    +AL LF ++Q   +KP   T  + L   A  G+++ G  +H  + K
Sbjct: 162 TSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIK 221

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
            GLD  + V  ++++M++K   + DA +VFD+M  ++  +W++MI  + T+G   ++  +
Sbjct: 222 SGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFEL 281

Query: 314 FEEMMKAQVSPDEITFLGLLYACSH 338
           F  M    V   +  F  ++  C++
Sbjct: 282 FYRMRLEGVKLTQTIFATVIKLCAN 306



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 117/226 (51%), Gaps = 4/226 (1%)

Query: 178 ARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLS-ALSSCA 236
           ++++F+   +  +   N ++  ++R+ +  EAL+LF  L+ R+  PTD + LS  L  C 
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLR-RSGSPTDGSSLSCVLKVCG 103

Query: 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSA 296
            L    +GK +H    K G  + V V T+L+DM+ K   ++D   VFD M  K+  +W++
Sbjct: 104 CLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTS 163

Query: 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKY 356
           ++  Y  +G   +++ +F +M    + P+  TF  +L   +  G V++G    ++M  K 
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKS 222

Query: 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
           G+   I     MV++  ++  + +A    D +  ++  + W ++++
Sbjct: 223 GLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNA-VSWNSMIA 267


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 186/495 (37%), Positives = 293/495 (59%), Gaps = 10/495 (2%)

Query: 26  SLLPRCTSFR---GLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L  C+      G KQIHA  ++   + D++V+  LI+F T+    + ++    LFD++
Sbjct: 257 SVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTK---CNRVKAGRKLFDQM 313

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
              +I+ + TM  GY ++     A+ LF E+   G  PD ++  S+L +C     EALE+
Sbjct: 314 VVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCG--SREALEQ 371

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G+Q+H + IK  L S+ +V   LI++YA+ + +  A+++F+ ++E  V+SYNA+I  Y+ 
Sbjct: 372 GRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSS 431

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
             + +EAL LF E++ R  KP + T  + +++ + L SL  G+  H  + K GLD    V
Sbjct: 432 QEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFV 491

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
             AL+DM+AKCG +++A  +F++   +D   W++MI  +A HG+  +++ MF EMMK  +
Sbjct: 492 TNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGI 551

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            P+ +TF+ +L ACSH G V++G N+F SM   +GI PG +HY C+V LLGR+G+L EA 
Sbjct: 552 QPNYVTFVAVLSACSHAGRVEDGLNHFNSM-PGFGIKPGTEHYACVVSLLGRSGKLFEAK 610

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
            FI+++PI+   I+WR+LLS+C    N+ L K   E     D    G Y++LSN+ A  G
Sbjct: 611 EFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKG 670

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
            W DV  +R  M    V+K PG S IEVNN V  F + D  H    D+   LD L++ +K
Sbjct: 671 MWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFIARDTTHR-EADIGSVLDILIQHIK 729

Query: 503 MVGYVPDTSLVHHGD 517
             GYVPD + +   D
Sbjct: 730 GAGYVPDATALLMND 744



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 117/435 (26%), Positives = 220/435 (50%), Gaps = 29/435 (6%)

Query: 1   MATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQ-------------IHAVTIKT 47
            +T+ SP      P   C   PN   L P+   F  L Q             IH   I +
Sbjct: 25  FSTSVSPQFLLQNP---CLQIPN---LRPKRREFANLLQLSISRNPIIHYKIIHGQIIVS 78

Query: 48  HLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAI 107
            LQ+D  +   LIN C++   +  +++A ++FD++P  +++ +++M   YS+      A+
Sbjct: 79  GLQSDTFLANILINVCSK---SDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEAL 135

Query: 108 FLFVELL-NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI 166
            +FV+L   SG  P+++   S+++AC  +G   +E+G QLH F ++ G + ++YV T+LI
Sbjct: 136 MVFVDLQRKSGEHPNEFVLASVIRACTQLGV--VEKGAQLHGFVVRSGFDQDVYVGTSLI 193

Query: 167 NLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV 226
           + Y++  ++E AR +F+ +SE   V++  II  Y +  R   +L LF +++E N+ P   
Sbjct: 194 DFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRY 253

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
            + S LS+C++L  L+ GK IH Y+ + G +  V V   LID + KC R+     +FD M
Sbjct: 254 VVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQM 313

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
             K+  +W+ MI  Y  +    +++ +F EM +    PD      +L +C     +++G 
Sbjct: 314 VVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGR 373

Query: 347 N-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS 405
             + Y+++        +K+   ++D+  ++  L +A +  D +  +   I +  ++   S
Sbjct: 374 QVHAYTIKANLESDEFVKN--GLIDMYAKSNLLIDAKKVFDVMA-EQNVISYNAMIEGYS 430

Query: 406 SHNNLGLAKQVIERI 420
           S   L  A ++   +
Sbjct: 431 SQEKLSEALELFHEM 445


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 178/481 (37%), Positives = 283/481 (58%), Gaps = 8/481 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K++H V ++   + D  + + L+NF         + +A  +FD     D+V +N +  GY
Sbjct: 125 KEVHGVIVRIGYELDGFLQSSLLNFYM---VCGEIGNAQQVFDEFDAKDVVFWNALITGY 181

Query: 98  SRSKTPIRAIFLFVELLN-SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK-LGL 155
           +R    + +  +F E++    + P++ +   L+   AC+ ++ L+ G+ +H + +K + L
Sbjct: 182 ARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLI--VACIESKNLKLGRAIHGYMMKDMVL 239

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
              + +   LINLY +C  ++ AR++F+ I E   V +N++I  Y +    NE + L RE
Sbjct: 240 REGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLRE 299

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
           +   NLKP   T+   LS+CA +G+ +LG W+H + +K G+   V + TALIDM+AKCG 
Sbjct: 300 MHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIWD-VFIGTALIDMYAKCGF 358

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           +  A  VFD M+ ++   W+A++  YA+HGQ   +I +F EM ++   PD ITFL +L+A
Sbjct: 359 IGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHA 418

Query: 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
           C+H+GLV+ G  YF  M   Y I P ++HYGCMVDLLGRAG L EA   I  + ++   +
Sbjct: 419 CAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVV 478

Query: 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455
           +W  LLS+CS H N+ + +     + +L+   GG YVIL+NL A A R+  V  +R++M 
Sbjct: 479 VWGALLSACSIHGNIEIGEWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMMV 538

Query: 456 DRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHH 515
           ++G+ K  GCS IE+ +VV EF   D +H  S ++   LDEL K+LKM GYVP  +L   
Sbjct: 539 EKGICKSHGCSMIEIGDVVHEFVVADKMHPRSEEIYSVLDELSKKLKMAGYVPLLALDEE 598

Query: 516 G 516
           G
Sbjct: 599 G 599



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 131/438 (29%), Positives = 241/438 (55%), Gaps = 19/438 (4%)

Query: 17  LCTNTPNA-LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           +   TP + L+L+  CT+ + LKQIHA +I + L     ++TK+IN      + + +++A
Sbjct: 1   MTIQTPKSVLALIETCTNIQQLKQIHAKSIISSLSYTQFIITKIIN---SFLSHACLDYA 57

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN-SGLLPDDYSFPSLLKACAC 134
             +F++  EPD  ++N M R YS S+TP  AI ++ ++     +L D Y++P + KACA 
Sbjct: 58  TQVFNQTQEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACA- 116

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
               A+E+GK++H   +++G   + ++ ++L+N Y  C ++  A+++F+      VV +N
Sbjct: 117 -SQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWN 175

Query: 195 AIITAYARSSRPNEALSLFRELQE-RNLKPTDVTMLSALSSCALLGSLDLGKWIHEY-IK 252
           A+IT YAR     ++  +F+E+ E + ++P + TM+  + +C    +L LG+ IH Y +K
Sbjct: 176 ALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMK 235

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
              L + VK+  ALI+++ KCG LD A  +FD +  K+T  W+++I  Y   G  ++ I 
Sbjct: 236 DMVLREGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIE 295

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           +  EM  + + PD  T  G+L AC+  G  + G N+ +   +K GI   +     ++D+ 
Sbjct: 296 LLREMHLSNLKPDRFTVSGVLSACAQMGAFNLG-NWVHRFAEKKGIWD-VFIGTALIDMY 353

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG--- 429
            + G +  A +  D++  ++    W  +LS  +SH   G A+  IE   E+ +S      
Sbjct: 354 AKCGFIGAARKVFDQMNERNVAT-WNAILSGYASH---GQAESAIELFSEMRESGARPDS 409

Query: 430 -DYVILSNLCARAGRWED 446
             ++ + + CA +G  E+
Sbjct: 410 ITFLAVLHACAHSGLVEN 427


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 186/537 (34%), Positives = 313/537 (58%), Gaps = 13/537 (2%)

Query: 26  SLLPRCT---SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S++  CT   S R  +Q+H+V ++  L +D  V   L++   +     SMEHA  +F  +
Sbjct: 251 SMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTM 310

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIF-LFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           P  +++ +  +  GY +S      +  LF E+LN  + P+  ++ +LLKACA +  +  +
Sbjct: 311 PRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQ--D 368

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
            G+Q+H   +K  +     V   L+++YAE   +E AR+ F+ + E  ++S +  +    
Sbjct: 369 SGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDV---- 424

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
            + R N + S   +++  +   +  T  S LS+ A +G L  G+ +H    K G      
Sbjct: 425 ETERNNASCS--SKIEGMDDGVSTFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQG 482

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           ++ +L+ M+A+CG L+DA   FD M   +  +W+++I   A HG   +++ MF +M+ A 
Sbjct: 483 ISNSLVSMYARCGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAG 542

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           V P+++T++ +L ACSH GLV EG  +F SM+  +G++P ++HY C+VDLL R+G ++EA
Sbjct: 543 VKPNDVTYIAVLSACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEA 602

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
            +FI+E+P K+  ++W+TLLS+C ++ N  + +     +  L+      YV+LSNL A A
Sbjct: 603 RQFINEMPCKADALVWKTLLSACRTYGNTEIGEIAANHVINLEPRDPAPYVLLSNLYADA 662

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           G W++V  +R LM+D+ + K  G S ++V N + EF +GD  H  + D+   L  L++E+
Sbjct: 663 GLWDEVARIRSLMRDKNLSKETGLSWMDVGNTIHEFRAGDTSHPLAIDIYAKLVTLIREI 722

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           K +GYVPDTS+V H DM +E KE  L  HSEK+A+ FGL+ T     +R+ KNLRVC
Sbjct: 723 KDIGYVPDTSIVLH-DMSEELKEQYLLQHSEKIAVAFGLITTSATKPMRIFKNLRVC 778



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 180/372 (48%), Gaps = 14/372 (3%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTH-LQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI- 82
           L+   R    R  + +H   +++  L  D  V   L+   T      ++E A  +FD++ 
Sbjct: 47  LTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLL---TMYSKCGAVEAARRVFDQMC 103

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
              D+V +  MA   +R+     ++ L  E+L  GL P+ ++  +  +AC       L  
Sbjct: 104 GVRDLVSWTAMASCLARNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAG 163

Query: 143 GKQLHCFAIKLGL-NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
           G  L  F +K G   +++ V   LI+++A   D+ AA+R+F+ + E   V +  +IT Y 
Sbjct: 164 GVVLG-FVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYV 222

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
           ++   ++ + LF  + +   +P   +M S +S+C  LGS+ LG+ +H    + GL     
Sbjct: 223 QAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSC 282

Query: 262 VNTALIDMHAKCG---RLDDAVSVFDNMSGKDTQAWSAMIVAYATHG-QGHKSILMFEEM 317
           V+  L+DM+AK      ++ A  VF  M   +  +W+A+I  Y   G Q +  + +F EM
Sbjct: 283 VSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREM 342

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           +   + P+ IT+  LL AC++    D G   + + ++     V  + +   +V +   +G
Sbjct: 343 LNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGN--ALVSMYAESG 400

Query: 377 RLDEAYRFIDEL 388
            ++EA +  D+L
Sbjct: 401 CMEEARKAFDQL 412


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 192/528 (36%), Positives = 294/528 (55%), Gaps = 9/528 (1%)

Query: 31  CTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLF 90
           C S    ++IHA   K+ L  D  +  +L+   T        E A  LFD +P  D+V +
Sbjct: 52  CPSISNCREIHARVFKSLLYRDGFIGDQLV---TCYNKLGYAEDALKLFDDMPHKDLVSW 108

Query: 91  NTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFA 150
           N++  G+SR        F  ++   S + P++ +  S++ AC      AL+ GK +H F 
Sbjct: 109 NSLISGFSRCLHMSLTAFYTMKFEMS-VKPNEVTILSMISACN----GALDAGKYIHGFG 163

Query: 151 IKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEAL 210
           IK+G    + V  +LIN+Y +  D+ +A R+FE I +P  VS+N+II A   +    E +
Sbjct: 164 IKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGI 223

Query: 211 SLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270
             F +++   ++  + T+L+ L +C  LG   L + IH  +   G    + + TAL+D +
Sbjct: 224 DYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTY 283

Query: 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           AK GRL  +  VF  +   D  AW+AM+  YA HG G ++I +FE M    + PD +TF 
Sbjct: 284 AKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFT 343

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
            LL ACSH+GLV+EG +YF  M + YGI P + HY CMVDLLGR G L++AY  I  +P+
Sbjct: 344 HLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPM 403

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL 450
           +    +W  LL +C  H N+ L K+V E +  ++     +Y++LSN+ + +  W+D   +
Sbjct: 404 EPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKV 463

Query: 451 RKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT 510
           R L+K+RG+ + PG SSIE  N    FF GD  H  +  +   L+EL+ +++  GY   T
Sbjct: 464 RALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKT 523

Query: 511 SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             V   D+E+E KE  +  HSEKLAI FGLL +  G  + + KNLR+C
Sbjct: 524 EYVLQ-DVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRIC 570


>gi|357487485|ref|XP_003614030.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515365|gb|AES96988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 181/495 (36%), Positives = 291/495 (58%), Gaps = 14/495 (2%)

Query: 19  TNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLL 78
           TN    L+LL    S   L Q+ A      L ND ++L++L+ F + +P  +      L+
Sbjct: 8   TNKQQCLNLLNSLHSITKLHQLQAQIHLNSLHNDTHILSQLVYFFSLSPFKNLSHARKLV 67

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
           F     P  + +N + RGY+ S +PI +I++F ++  +G+ P+  ++P + K+CA   A 
Sbjct: 68  FHFSNNPSPISWNILIRGYASSDSPIESIWVFKKMRENGVKPNKLTYPFIFKSCAM--AL 125

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
            L EGKQ+H   +K GL+S++YVC  +IN Y  C  +  AR++F+ +    +VS+N+++T
Sbjct: 126 VLCEGKQVHADLVKFGLDSDVYVCNNMINFYGCCKKIVYARKVFDEMCVRTIVSWNSVMT 185

Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
           A   +   ++ +  F ++++   +P + +M+  LS CA LG L LG+W+H  +   G+  
Sbjct: 186 ACVENVWLSDGIGYFFKMRDCAFEPDETSMVLLLSVCAELGYLSLGRWVHSQLILKGMVL 245

Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
            V + TAL+DM+ K G L  A  VF+ M  ++   WSAMI+  A HG   +++++F+ M 
Sbjct: 246 SVHLGTALVDMYGKSGALGYARVVFERMEKRNVWTWSAMIMGLAQHGFAEEALVLFDMMN 305

Query: 319 KAQ---VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
             +   +SP+ +T+LG+L ACSH G+VDEG+ YF  M   +GI P + HYG MVD+LGRA
Sbjct: 306 DKKSNNISPNYVTYLGVLCACSHAGMVDEGFRYFRDMEFVHGIKPMMVHYGAMVDVLGRA 365

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSH---NNLGLAKQVIERIFELDDSHGGDYV 432
           G L EAYRFI  +P    PI+WRTLLS+C+ H   +  G+  +V +R+ E++   GG+ V
Sbjct: 366 GHLGEAYRFIQSMPFAPDPIVWRTLLSACTVHDVCDRTGIGDKVRKRLLEMEPKRGGNLV 425

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
           I++N+ A  G WE    +R++M+D G+ K+ G S +++   +  FF+G   H    DL  
Sbjct: 426 IVANMYAEVGNWEKAANVRRVMRDGGLKKMAGESCVDLGGSMYRFFAG---HDSRPDLMP 482

Query: 493 A---LDELVKELKMV 504
               LD L   LKMV
Sbjct: 483 VYDLLDALNLHLKMV 497


>gi|79527297|ref|NP_198857.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171829|sp|Q9FND6.1|PP411_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g40410, mitochondrial; Flags: Precursor
 gi|10178153|dbj|BAB11598.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|17065126|gb|AAL32717.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|30725418|gb|AAP37731.1| At5g40410 [Arabidopsis thaliana]
 gi|332007162|gb|AED94545.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 608

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 183/487 (37%), Positives = 288/487 (59%), Gaps = 6/487 (1%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS--GLLPDDYSFPSLLKAC 132
           A  LFD +PE D+V +N++  GYS      +   +   ++ S  G  P++ +F S++ AC
Sbjct: 85  AEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISAC 144

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
              G++  EEG+ +H   +K G+   + V    IN Y +  D+ ++ ++FE++S   +VS
Sbjct: 145 VYGGSK--EEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVS 202

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +N +I  + ++    + L+ F   +    +P   T L+ L SC  +G + L + IH  I 
Sbjct: 203 WNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIM 262

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
             G      + TAL+D+++K GRL+D+ +VF  ++  D+ AW+AM+ AYATHG G  +I 
Sbjct: 263 FGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIK 322

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
            FE M+   +SPD +TF  LL ACSH+GLV+EG +YF +M  +Y I P + HY CMVDLL
Sbjct: 323 HFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLL 382

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432
           GR+G L +AY  I E+P++ +  +W  LL +C  + +  L  +  ER+FEL+   G +YV
Sbjct: 383 GRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYV 442

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
           +LSN+ + +G W+D   +R LMK +G+++  GCS IE  N + +F  GD  H  S  +QK
Sbjct: 443 MLSNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHPESEKIQK 502

Query: 493 ALDELVKELKM-VGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
            L E+ K++K  +GY   T  V H D+ ++ KE  +  HSEK+A+ FGLL   P   I +
Sbjct: 503 KLKEIRKKMKSEMGYKSKTEFVLH-DVGEDVKEEMINQHSEKIAMAFGLLVVSPMEPIII 561

Query: 552 VKNLRVC 558
            KNLR+C
Sbjct: 562 RKNLRIC 568



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 92/177 (51%), Gaps = 7/177 (3%)

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
           ++++A+ SC    S++L + +H  + K    ++  +   L+  + + G    A  +FD M
Sbjct: 36  SLIAAVKSCV---SIELCRLLHCKVVKSVSYRHGFIGDQLVGCYLRLGHDVCAEKLFDEM 92

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS--PDEITFLGLLYACSHTGLVDE 344
             +D  +W+++I  Y+  G   K   +   MM ++V   P+E+TFL ++ AC + G  +E
Sbjct: 93  PERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSKEE 152

Query: 345 GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
           G    + +  K+G++  +K     ++  G+ G L  + +  ++L IK+  + W T++
Sbjct: 153 G-RCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNL-VSWNTMI 207


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 187/490 (38%), Positives = 280/490 (57%), Gaps = 6/490 (1%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLL-PDDYSFPSLLK 130
           ++ A  +F+ I E  +V ++ M   Y+       A+ LF  + N G + P+  +F  +  
Sbjct: 36  LDEARAIFNGILERTVVSWSAMIGAYALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFN 95

Query: 131 ACACVGAEALEEGKQLHCFAIKLG--LNSNLYVCTTLINLYAECSDVEAARRIFENISEP 188
           AC  +  E LE+G+++H  A+  G   +SN  +   L+N+Y  C  +E AR++F+ +  P
Sbjct: 96  ACGVI--EDLEQGREIHALAMASGELKSSNAILENALLNMYVRCGSLEEARKVFDTMDHP 153

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
              S+ ++ITA   +    EAL LF  +    + PT VT+ S L++CA  G+L +GK IH
Sbjct: 154 DAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIH 213

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
             +   G    V   TAL+DM+AKCG L+ +  VF  M  +++ +W+AMI A A HGQG 
Sbjct: 214 SRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGD 273

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
           +++ +F+EM    +  D  TF+ +L ACSH GL+ E   +F+SM + Y I P   HY   
Sbjct: 274 EALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRA 333

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428
           +D +GRAGRL +A   I  +P     + W+TLL++C  H+    A +V E + +L     
Sbjct: 334 LDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAELLSKLAPEDS 393

Query: 429 GDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYST 488
             Y +L N+ A  GR+ D   +RK M DRG+ KVPG S IEV N V EF +GD  H    
Sbjct: 394 MAYTLLGNVYAATGRYGDQMRVRKGMTDRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRD 453

Query: 489 DLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTT 548
           ++   L++L   ++  GYVP+T  V H  + +EEKE  +  HSEKLAI FGL+ TPPGT 
Sbjct: 454 EILLELEKLGGRMREAGYVPNTKDVLHA-VNEEEKEQLIGLHSEKLAIAFGLIATPPGTP 512

Query: 549 IRVVKNLRVC 558
           + +VKNLRVC
Sbjct: 513 LLIVKNLRVC 522



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 162/328 (49%), Gaps = 13/328 (3%)

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
           +EEG+++H      G +        L+++YA+C  ++ AR IF  I E  VVS++A+I A
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGA 60

Query: 200 YARSSRPNEALSLFRELQ-ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
           YA   R  EAL LF  ++ +  ++P  +T     ++C ++  L+ G+ IH      G  K
Sbjct: 61  YALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELK 120

Query: 259 YVK--VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
                +  AL++M+ +CG L++A  VFD M   D  +W++MI A   + +  +++ +F  
Sbjct: 121 SSNAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHR 180

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M    + P  +T   +L AC+ +G +  G    +S  D  G    +     ++D+  + G
Sbjct: 181 MNLEGIPPTSVTLASVLNACACSGALKVG-KQIHSRLDASGFHSSVLAQTALLDMYAKCG 239

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD----DSHGGDYV 432
            L+ + +    +  +++ + W  ++++ + H   G   + +E   E++     +    ++
Sbjct: 240 SLECSSKVFTAMETRNS-VSWTAMIAALAQH---GQGDEALELFKEMNLEGMVADATTFI 295

Query: 433 ILSNLCARAGRW-EDVDYLRKLMKDRGV 459
            +   C+ AG   E +++   +++D  +
Sbjct: 296 CVLRACSHAGLIKESLEFFHSMVEDYAI 323



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 165/354 (46%), Gaps = 23/354 (6%)

Query: 22  PNALS---LLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTK--LINFCTQNPTTSSME 73
           PNA++   +   C     L+Q   IHA+ + +      N + +  L+N   +     S+E
Sbjct: 85  PNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSNAILENALLNMYVR---CGSLE 141

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
            A  +FD +  PD   + +M    + +   + A+ LF  +   G+ P   +  S+L ACA
Sbjct: 142 EARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACA 201

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
           C G  AL+ GKQ+H      G +S++   T L+++YA+C  +E + ++F  +     VS+
Sbjct: 202 CSG--ALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSW 259

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEYIK 252
            A+I A A+  + +EAL LF+E+    +     T +  L +C+  G +    ++ H  ++
Sbjct: 260 TAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVE 319

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQGHKSI 311
            Y +          +D   + GRL DA  +  +M    +T  W  ++ A   H Q  ++ 
Sbjct: 320 DYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERAT 379

Query: 312 LMFEEMMKAQVSPDE---ITFLGLLYACSHTGLVDEGWNYFYSMRDK-YGIVPG 361
            + E + K  ++P++    T LG +YA   TG   +       M D+    VPG
Sbjct: 380 KVAELLSK--LAPEDSMAYTLLGNVYAA--TGRYGDQMRVRKGMTDRGLKKVPG 429


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 197/522 (37%), Positives = 308/522 (59%), Gaps = 8/522 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K+IHA  +K  L ++L +   LI+  ++      + +A L+FD++   D++ + T+   Y
Sbjct: 233 KEIHAYAMKNWLDSNLRIGNTLIDMYSK---CCCVAYAGLVFDKMINKDLISWTTVIAAY 289

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           +++     A+ L  ++   G+  D     S L AC+  G   L   K++H + +K GL S
Sbjct: 290 AQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACS--GLRCLSHAKEVHGYTLKRGL-S 346

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           +L +   +I++YA+C ++  A R+FE+I    VVS+ ++I+ Y  +   NEAL +F  ++
Sbjct: 347 DLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMK 406

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           E +++P  +T++S LS+ A L +L+ GK IH +I + G         +L+DM+A CG L+
Sbjct: 407 ETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLE 466

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           +A  VF     K    W+ MI AY  HG+G  ++ +F  M   ++ PD ITFL LLYACS
Sbjct: 467 NAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACS 526

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H+GL++EG     +M+ KY + P  +HY C+VDLLGRA  L+EAY F+  + I+ T  +W
Sbjct: 527 HSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVW 586

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
              L +C  H+N  L +   +++ +LD    G YV++SN+ A +GRW+DV+ +R  MK  
Sbjct: 587 CAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGG 646

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL-KMVGYVPDTSLVHHG 516
           G+ K PGCS IEV N V  F   D  H  S  + + L ++ ++L K  GYVP T LV H 
Sbjct: 647 GLKKNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQKLAQITEKLEKEGGYVPQTKLVLH- 705

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           ++  EEK   L  HSE+LAI +GL++T  GT IR+ KNLRVC
Sbjct: 706 NVGKEEKVQMLYGHSERLAIAYGLMSTSEGTPIRITKNLRVC 747



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 202/384 (52%), Gaps = 20/384 (5%)

Query: 117 GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVE 176
           G+  D ++FP +LKAC  V  E +  G ++H   IK G +S ++V  +L+++YA+C+D+ 
Sbjct: 5   GVPFDSFTFPCVLKACGVV--EDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDIL 62

Query: 177 AARRIFENISEPC-VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSC 235
            AR++F+ ++E   VVS+N+II+AY+ + +  EAL LFRE+Q+  +     T+++AL +C
Sbjct: 63  GARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQAC 122

Query: 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWS 295
                  LG  IH  I K      V V  AL+ MH + G++  A  +FD +  KD   W+
Sbjct: 123 EDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWN 182

Query: 296 AMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRD 354
           +MI  +  +G  ++++  F  +  A + PDE++ + +L A    G +  G   + Y+M++
Sbjct: 183 SMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKN 242

Query: 355 KYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN----NL 410
              +   ++    ++D+  +   +  A    D++ I    I W T++++ + +N     L
Sbjct: 243 --WLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKM-INKDLISWTTVIAAYAQNNCHTEAL 299

Query: 411 GLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEV 470
            L ++V  +  ++D       +I S L A +G    +  L    +  G     G S + +
Sbjct: 300 KLLRKVQTKGMDVD-----TMMIGSTLLACSG----LRCLSHAKEVHGYTLKRGLSDLMM 350

Query: 471 NNVVREFFSGDGVHSYSTDLQKAL 494
            N++ + ++  G  +Y+T + +++
Sbjct: 351 QNMIIDVYADCGNINYATRMFESI 374



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 195/390 (50%), Gaps = 14/390 (3%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE-PDIVLFNTMARGY 97
           +IH + IK    + + V   L++   +    + +  A  LFDR+ E  D+V +N++   Y
Sbjct: 31  EIHGLIIKCGYDSIVFVANSLVSMYAK---CNDILGARKLFDRMNERNDVVSWNSIISAY 87

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           S +   + A+ LF E+  +G+  + Y+  + L+AC     + L  G ++H   +K     
Sbjct: 88  SLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKL--GMEIHAAILKSNQVL 145

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           ++YV   L+ ++     +  A RIF+ + E   +++N++I  + ++   NEAL  F  LQ
Sbjct: 146 DVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQ 205

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           + NLKP +V+++S L++   LG L  GK IH Y  K  LD  +++   LIDM++KC  + 
Sbjct: 206 DANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVA 265

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            A  VFD M  KD  +W+ +I AYA +    +++ +  ++    +  D +     L ACS
Sbjct: 266 YAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACS 325

Query: 338 HTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
               +      + Y+++     +  +     ++D+    G ++ A R  + +  K   + 
Sbjct: 326 GLRCLSHAKEVHGYTLKRG---LSDLMMQNMIIDVYADCGNINYATRMFESIKCKDV-VS 381

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
           W +++ SC  HN  GLA + +   + + ++
Sbjct: 382 WTSMI-SCYVHN--GLANEALGVFYLMKET 408


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 176/473 (37%), Positives = 277/473 (58%), Gaps = 5/473 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           KQIH + +K  L + ++V   L+   T      S++ A   F+   + + + ++ M  GY
Sbjct: 229 KQIHCIAVKNGLLSIVSVGNALV---TMYAKCGSLDDALQTFETSSDKNSITWSAMITGY 285

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           ++S    +A+ LF  +  SG+ P +++F  ++ AC+ +GA    EGKQ+H + +KLG  S
Sbjct: 286 AQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAW--EGKQVHDYLLKLGFES 343

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            +YV T L+++YA+CS +  AR+ F+ + EP +V + ++I  Y ++    +ALSL+  ++
Sbjct: 344 QIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRME 403

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              + P ++TM S L +C+ L +L+ GK IH    KYG    V + +AL  M+AKCG L 
Sbjct: 404 MEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLK 463

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           D   VF  M  +D  +W+AMI   + +G G +++ +FEEM      PD +TF+ +L ACS
Sbjct: 464 DGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACS 523

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H GLV+ GW YF  M D++G+ P ++HY CMVD+L RAG+L EA  F +   I     LW
Sbjct: 524 HMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTESATIDHGMCLW 583

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
           R +L +C ++ N  L     E++ EL       YV+LS++ +  GRWEDV+ +R++MK R
Sbjct: 584 RIILGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSSIYSALGRWEDVERVRRMMKLR 643

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT 510
           GV K PGCS IE+ + V  F   D +H    D+   L +L K++K  GY P T
Sbjct: 644 GVSKEPGCSWIELKSGVHVFVVKDQMHPQIGDIHVELRQLSKQMKDEGYEPAT 696



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 123/430 (28%), Positives = 214/430 (49%), Gaps = 17/430 (3%)

Query: 36  GLKQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMA 94
           G +  HAV IK     D+ V + L+N +C    T      A  +FD +PE + V + TM 
Sbjct: 126 GGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTP----EARKVFDTMPERNSVSWATMI 181

Query: 95  RGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
            GY+  K    A+ LF  +       +++ F S+L A      E +  GKQ+HC A+K G
Sbjct: 182 SGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTL--PELVNNGKQIHCIAVKNG 239

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           L S + V   L+ +YA+C  ++ A + FE  S+   ++++A+IT YA+S   ++AL LF 
Sbjct: 240 LLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFS 299

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
            +    ++P++ T +  +++C+ LG+   GK +H+Y+ K G +  + V TAL+DM+AKC 
Sbjct: 300 SMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCS 359

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
            + DA   FD +   D   W++MI  Y  +G+   ++ ++  M    + P+E+T   +L 
Sbjct: 360 SIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLK 419

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           ACS    +++G    ++   KYG    +     +  +  + G L +       +P +   
Sbjct: 420 ACSSLAALEQG-KQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDV- 477

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELD-DSHGGDYVILSNL---CARAGRWE-DVDY 449
           I W  ++S  S +   G  K+ +E   E+  +    DYV   N+   C+  G  E    Y
Sbjct: 478 ISWNAMISGLSQN---GCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGY 534

Query: 450 LRKLMKDRGV 459
            R +  + G+
Sbjct: 535 FRMMFDEFGM 544



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 179/371 (48%), Gaps = 10/371 (2%)

Query: 33  SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNT 92
           S +  K +HA  IK+   + + +   L+N   +      +  A  +F+RI   D+V +N 
Sbjct: 21  SLQKGKALHAQIIKSS-SSCVYIANSLVNLYAK---CQRLREAKFVFERIQNKDVVSWNC 76

Query: 93  MARGYSRS--KTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFA 150
           +  GYS+         + LF  +      P+ ++F  +  A + +   A   G+  H  A
Sbjct: 77  IINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAA--GGRLAHAVA 134

Query: 151 IKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEAL 210
           IK+    +++V ++L+N+Y +      AR++F+ + E   VS+  +I+ YA      EAL
Sbjct: 135 IKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEAL 194

Query: 211 SLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270
            LFR ++       +    S LS+  L   ++ GK IH    K GL   V V  AL+ M+
Sbjct: 195 GLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMY 254

Query: 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           AKCG LDDA+  F+  S K++  WSAMI  YA  G   K++ +F  M  + + P E TF+
Sbjct: 255 AKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFV 314

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
           G++ ACS  G   EG    +    K G    I     +VD+  +   + +A +  D L  
Sbjct: 315 GVINACSDLGAAWEG-KQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQ- 372

Query: 391 KSTPILWRTLL 401
           +   +LW +++
Sbjct: 373 EPDIVLWTSMI 383



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 141/286 (49%), Gaps = 7/286 (2%)

Query: 119 LPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAA 178
           LP + SF + L         +L++GK LH   IK   +S +Y+  +L+NLYA+C  +  A
Sbjct: 3   LPSNRSFFTAL--LQYTHNRSLQKGKALHAQIIKSS-SSCVYIANSLVNLYAKCQRLREA 59

Query: 179 RRIFENISEPCVVSYNAIITAYARS--SRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236
           + +FE I    VVS+N II  Y++   S  +  + LF+ ++  N  P   T     ++ +
Sbjct: 60  KFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAAS 119

Query: 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSA 296
            L     G+  H    K    + V V ++L++M+ K G   +A  VFD M  +++ +W+ 
Sbjct: 120 TLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWAT 179

Query: 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKY 356
           MI  YA+     +++ +F  M + +   +E  F  +L A +   LV+ G    + +  K 
Sbjct: 180 MISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNG-KQIHCIAVKN 238

Query: 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
           G++  +     +V +  + G LD+A +  +    K++ I W  +++
Sbjct: 239 GLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNS-ITWSAMIT 283


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 184/524 (35%), Positives = 304/524 (58%), Gaps = 12/524 (2%)

Query: 38  KQIHAVTIKTHLQND---LNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMA 94
           K  H + I   L  D    N+L  L   C +N        A L+FD +    IV +NTM 
Sbjct: 77  KSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDC------ARLVFDIMHVRSIVSWNTMI 130

Query: 95  RGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
            GY+ S   ++A+ LF  +   G    +++  S +  CAC    A+ E KQLH  A+KL 
Sbjct: 131 AGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTI--CACAAKYAINECKQLHTIALKLA 188

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           L+SN +V T ++++YA+C+ ++ A  +FE + E  +V+++++   Y ++    EAL LFR
Sbjct: 189 LDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFR 248

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
             Q   ++ T+ T+ + LS+CA L     G  +H  I K G      V  +L+D++A+CG
Sbjct: 249 CAQREGVELTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARCG 308

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
           +++ A ++F  M  K+   W+AMI +++ H    +++++FE+M +  + P+E+T+L +L 
Sbjct: 309 QIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLS 368

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
            CSH GLV++G +YF  +     + P + HY CMVD+LGR+G+ DEA+  ++++P + T 
Sbjct: 369 VCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMPFEPTA 428

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454
            +W +LL SC ++NN+ LA+   E++F+L+  +GG++V+LSN+ A +G WE+V   RK +
Sbjct: 429 SMWGSLLGSCRNYNNIRLARIAAEQLFQLEPDNGGNHVLLSNVYAASGNWENVLMARKYL 488

Query: 455 KDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVH 514
           KD G  K  G S IE    V  F  G+  H   TD+   L+E+  E++            
Sbjct: 489 KDSGAKKEMGRSWIEAKGKVHVFVVGERKHPRITDIYNKLEEIYHEMRKFARRTSIECDL 548

Query: 515 HGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           H D+  E+KE  L++HSEKLA++FGL++ P    I + KNLR+C
Sbjct: 549 H-DVHAEQKEELLKHHSEKLALSFGLISLPSNIPIIIHKNLRIC 591



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 158/328 (48%), Gaps = 4/328 (1%)

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
           C   ++L  GK  H  AI  GL ++   C  LINLY +C   + AR +F+ +    +VS+
Sbjct: 67  CAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSW 126

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           N +I  Y  S    +AL LF  +       ++ T+ S + +CA   +++  K +H    K
Sbjct: 127 NTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLHTIALK 186

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
             LD    V TA++D++AKC  + DA  VF+ M  +    WS++   Y  +G   +++ +
Sbjct: 187 LALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHL 246

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           F    +  V   E T   +L AC+   L  EG    +++  K G          +VD+  
Sbjct: 247 FRCAQREGVELTEFTLSAILSACASLALKIEGIQ-LHAVILKCGFHGNFFVAASLVDVYA 305

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD-SHGGDYV 432
           R G++++AY     +  K+  ++W  +++S S H +   A  + E++ +L    +   Y+
Sbjct: 306 RCGQIEKAYALFAYMEHKNV-VIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYL 364

Query: 433 ILSNLCARAGRWED-VDYLRKLMKDRGV 459
            + ++C+ AG  E    Y   LM DR V
Sbjct: 365 SVLSVCSHAGLVEKGRHYFSLLMSDRTV 392



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 5/186 (2%)

Query: 218 ERNLKPTDVTMLSA-LSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           +RNL   DV+ +S  L  CA   SL +GK  H     +GL         LI+++ KCGR 
Sbjct: 51  DRNL--IDVSAISQRLQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRN 108

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           D A  VFD M  +   +W+ MI  Y   G+  +++ +F  M +      E T    + AC
Sbjct: 109 DCARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICAC 168

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           +    ++E     +++  K  +         ++D+  +   + +A    +++P + T + 
Sbjct: 169 AAKYAINEC-KQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMP-ERTLVT 226

Query: 397 WRTLLS 402
           W +L +
Sbjct: 227 WSSLFA 232


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 188/535 (35%), Positives = 304/535 (56%), Gaps = 7/535 (1%)

Query: 24  ALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           ALS   R    RG + +         ++D+ V + L++   +     +M  A  +FDR+P
Sbjct: 114 ALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYAR---WGAMGDAVKVFDRMP 170

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
             D V ++TM  G+  +  P+ AI ++  +   G+  D+     +++AC    A  +  G
Sbjct: 171 RRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQAC--TAARNVRMG 228

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
             +H   ++ G+  ++   T+L+++YA+   ++ A R+F  +     VS++A+I+ +A++
Sbjct: 229 ASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQN 288

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
            + +EAL LFR +Q   ++P    ++SAL +C+ +G L LG+ +H +I +   D    + 
Sbjct: 289 GQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCILG 347

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
           TA IDM++KCG L  A  +F+ +S +D   W+AMI     HG+G  ++ +F+EM +  + 
Sbjct: 348 TAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMR 407

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
           PD  TF  LL A SH+GLV+EG  +F  M + + I P  KHY C+VDLL R+G ++EA  
Sbjct: 408 PDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVEEASD 467

Query: 384 FIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443
            +  +  + T  +W  LLS C ++  L L + + + I EL     G   ++SNL A   +
Sbjct: 468 LLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKK 527

Query: 444 WEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKM 503
           W+ V  +RKLMKD G  K+PGCSSIE+      F   D  H    ++   + +L  E++ 
Sbjct: 528 WDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSHPQREEIVSKVAKLDLEMRK 587

Query: 504 VGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +GY+P T  V+H D+E+E KE  L YHSEKLAI FGLLNT PGT + ++KNLRVC
Sbjct: 588 MGYIPRTEFVYH-DLEEEVKEQQLSYHSEKLAIAFGLLNTGPGTRLVIIKNLRVC 641



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 161/318 (50%), Gaps = 16/318 (5%)

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           +SR  +P  A+ +F   L     PD  +F   L ACA +G   L  G+ +   A   G  
Sbjct: 84  HSRRGSPASALRVF-RALPPAARPDSTTFTLALSACARLGD--LRGGESVRDRAFDAGYK 140

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            +++VC++L++LYA    +  A ++F+ +     V+++ ++  +  + +P +A+ ++R +
Sbjct: 141 DDVFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRM 200

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           +E  +K  +V M+  + +C    ++ +G  +H ++ ++G+   V   T+L+DM+AK G L
Sbjct: 201 REDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLL 260

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           D A  VF  M  ++  +WSAMI  +A +GQ  +++ +F  M  + + PD    +  L AC
Sbjct: 261 DVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLAC 320

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM-----VDLLGRAGRLDEAYRFIDELPIK 391
           S+ G +  G       R  +G +     + C+     +D+  + G L  A    + +  +
Sbjct: 321 SNIGFLKLG-------RSVHGFIVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDR 373

Query: 392 STPILWRTLLSSCSSHNN 409
              ILW  +++ C +H  
Sbjct: 374 DL-ILWNAMIACCGAHGR 390


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 201/572 (35%), Positives = 310/572 (54%), Gaps = 35/572 (6%)

Query: 19  TNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQND-------LNVLTKLINFCTQNPT 68
           TNT      +  CT+ + L   KQ+H + + +   +D       +++ +KL +F +    
Sbjct: 42  TNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAV 101

Query: 69  TSSME---------------------HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAI 107
              M                      +A  +FD +P+  +  +N M  G  + +     +
Sbjct: 102 YGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGL 161

Query: 108 FLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLIN 167
            LF E+   G  PD+Y+  S+    A  G  ++  G+Q+H + IK GL  +L V ++L +
Sbjct: 162 SLFREMHGLGFSPDEYTLGSVFSGSA--GLRSVSIGQQIHGYTIKYGLELDLVVNSSLAH 219

Query: 168 LYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT 227
           +Y     ++    +  ++    +V++N +I   A++  P   L L++ ++    +P  +T
Sbjct: 220 MYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKIT 279

Query: 228 MLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS 287
            ++ LSSC+ L     G+ IH    K G    V V ++LI M++KCG L DA   F    
Sbjct: 280 FVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSERE 339

Query: 288 GKDTQAWSAMIVAYATHGQGHKSILMFEEMM-KAQVSPDEITFLGLLYACSHTGLVDEGW 346
            +D   WS+MI AY  HGQG ++I +F  M  +  +  +E+ FL LLYACSH+GL D+G 
Sbjct: 340 DEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGL 399

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
             F  M +KYG  PG+KHY C+VDLLGRAG LD+A   I  +PIK+  ++W+TLLS+C+ 
Sbjct: 400 ELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNI 459

Query: 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCS 466
           H N  +A++V + I ++D +    YV+L+N+ A A RW DV  +RK M+D+ V K  G S
Sbjct: 460 HKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGIS 519

Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
             E    V +F  GD   S S ++   L EL  E+K+ GY PDT+ V H DM++EEKE  
Sbjct: 520 WFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLH-DMDEEEKESD 578

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           L  HSEKLA+ F L+  P G  IR++KNLRVC
Sbjct: 579 LVQHSEKLAVAFALMILPEGAPIRIIKNLRVC 610


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 186/512 (36%), Positives = 285/512 (55%), Gaps = 30/512 (5%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSR-----------SKTPIRAIFLFVELLN----S 116
           M  A  LFDR+P  D+V +N M  GY+R              P+R +F +  +++    +
Sbjct: 209 MSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQN 268

Query: 117 GLL----------PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI 166
           G+L          P+  +        A +    ++E K+L      +    N+    T++
Sbjct: 269 GMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKEL----FNMMPCRNVASWNTML 324

Query: 167 NLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV 226
             YA+   +E A+ +F+ + +   VS+ A++ AY++     E L LF E+          
Sbjct: 325 TGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRS 384

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
                LS+CA + +L+ G  +H  + + G      V  AL+ M+ KCG ++DA + F+ M
Sbjct: 385 AFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEM 444

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
             +D  +W+ MI  YA HG G +++ +F+ M      PD+IT +G+L ACSH+GLV++G 
Sbjct: 445 EERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGI 504

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
           +YFYSM   +G+    +HY CM+DLLGRAGRL EA+  + ++P +    +W  LL +   
Sbjct: 505 SYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRI 564

Query: 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCS 466
           H N  L +   E+IFEL+  + G YV+LSN+ A +G+W D   +R +M++RGV KVPG S
Sbjct: 565 HRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFS 624

Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
            IEV N V  F +GD VH     +   L++L   +K  GYV  T +V H D+E+EEKE  
Sbjct: 625 WIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLH-DVEEEEKEHM 683

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           L+YHSEKLA+ +G+LN PPG  IRV+KNLRVC
Sbjct: 684 LKYHSEKLAVAYGILNIPPGRPIRVIKNLRVC 715



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 102/437 (23%), Positives = 182/437 (41%), Gaps = 69/437 (15%)

Query: 68  TTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP--DDYSF 125
            +SS+  A  LFD +P  D V +N M   ++       A   F       L P  D  S+
Sbjct: 112 VSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYF------DLAPEKDAVSW 165

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
             +L A    G   +EE + L     +  + S       L++ Y +   +  AR +F+ +
Sbjct: 166 NGMLAAYVRNG--RVEEARGLFNSRTEWDVIS----WNALMSGYVQWGKMSEARELFDRM 219

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245
               VVS+N +++ YAR     EA  LF     R++     T  + +S  A  G L+  +
Sbjct: 220 PGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVVSGYAQNGMLEEAR 275

Query: 246 -------------W---IHEYIKKYGLD-----------KYVKVNTALIDMHAKCGRLDD 278
                        W   +  YI++  +D           + V     ++  +A+ G L++
Sbjct: 276 RVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEE 335

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A +VFD M  KD  +W+AM+ AY+  G   +++ +F EM +     +   F  +L  C+ 
Sbjct: 336 AKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCAD 395

Query: 339 TGLVDEGWNYFYSM-RDKYGIVPGIKHYGCMVD-----LLGRAGRLDEAYRFIDELPIKS 392
              ++ G      + R  YG+       GC V      +  + G +++A    +E+  + 
Sbjct: 396 IAALECGMQLHGRLIRAGYGV-------GCFVGNALLAMYFKCGNMEDARNAFEEMEERD 448

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFEL--DDSHGGDYVILSNL---CARAGRWED- 446
             + W T+++  + H   G  K+ +E IF++    S   D + L  +   C+ +G  E  
Sbjct: 449 V-VSWNTMIAGYARH---GFGKEALE-IFDMMRTTSTKPDDITLVGVLAACSHSGLVEKG 503

Query: 447 VDYLRKLMKDRGVLKVP 463
           + Y   +  D GV   P
Sbjct: 504 ISYFYSMHHDFGVTAKP 520



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 141/351 (40%), Gaps = 61/351 (17%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYS-RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
           A  LF  +P      +N M  GYS   + P+ A      L  +   PD+YS+ +LL A A
Sbjct: 57  AERLFAAMPRRSTSTYNAMLAGYSANGRLPLAA-----SLFRAIPRPDNYSYNTLLHALA 111

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
              + A   G       ++  +  N+     +I+ +A    V  AR  F+   E   VS+
Sbjct: 112 VSSSLADARG-LFDEMPVRDSVTYNV-----MISSHANHGLVSLARHYFDLAPEKDAVSW 165

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           N ++ AY R+ R  EA  LF    E                       D+  W       
Sbjct: 166 NGMLAAYVRNGRVEEARGLFNSRTE----------------------WDVISW------- 196

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
                      AL+  + + G++ +A  +FD M G+D  +W+ M+  YA  G   ++  +
Sbjct: 197 ----------NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRL 246

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           F+    A    D  T+  ++   +  G+++E    F +M ++  +      +  MV    
Sbjct: 247 FD----AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAV-----SWNAMVAAYI 297

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
           +   +DEA    + +P ++    W T+L+  +    L  AK V + + + D
Sbjct: 298 QRRMMDEAKELFNMMPCRNVAS-WNTMLTGYAQAGMLEEAKAVFDTMPQKD 347



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 113/259 (43%), Gaps = 22/259 (8%)

Query: 166 INLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTD 225
           I  +     V  A R+F  +      +YNA++  Y+ + R   A SLFR +     +P +
Sbjct: 45  ITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP----RPDN 100

Query: 226 VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285
            +  + L + A+  SL   + + + +    +   V  N  +I  HA  G +  A   FD 
Sbjct: 101 YSYNTLLHALAVSSSLADARGLFDEMP---VRDSVTYNV-MISSHANHGLVSLARHYFDL 156

Query: 286 MSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
              KD  +W+ M+ AY  +G+  ++  +F     ++   D I++  L+     +G V   
Sbjct: 157 APEKDAVSWNGMLAAYVRNGRVEEARGLF----NSRTEWDVISWNALM-----SGYVQ-- 205

Query: 346 WNYFYSMRDKYGIVPG--IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
           W      R+ +  +PG  +  +  MV    R G + EA R  D  P++     W  ++S 
Sbjct: 206 WGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV-FTWTAVVSG 264

Query: 404 CSSHNNLGLAKQVIERIFE 422
            + +  L  A++V + + E
Sbjct: 265 YAQNGMLEEARRVFDAMPE 283



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 14/180 (7%)

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130
           +ME A   F+ + E D+V +NTM  GY+R      A+ +F  +  +   PDD +   +L 
Sbjct: 433 NMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLA 492

Query: 131 ACACVGAEALEEG-KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS-EP 188
           AC+  G   +E+G    +      G+ +     T +I+L      +  A  + +++  EP
Sbjct: 493 ACSHSG--LVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEP 550

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQER--NLKPTDVTMLSALSSCALLGSLDLGKW 246
               + A++ A    SR +    L R   E+   L+P +  M   LS+         GKW
Sbjct: 551 DSTMWGALLGA----SRIHRNPELGRSAAEKIFELEPENAGMYVLLSNI----YASSGKW 602


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 184/524 (35%), Positives = 296/524 (56%), Gaps = 14/524 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPD--IVLFNTMAR 95
           KQ+H    KT    +  V T LI+   +    S +++A  LFD  P+     V +N++  
Sbjct: 30  KQLHCHVFKTGCLLEPFVQTSLISMYGK---CSLIDNARKLFDENPQSRKLTVCYNSLLS 86

Query: 96  GYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155
           GY+ +      + LF E+   G+  +  +   L++ C   G   L  G  +H F +K GL
Sbjct: 87  GYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGL--GMCVHGFCVKFGL 144

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
           + +  V   L+ +Y +  +++  R++F+ +    ++++NA+I  YA++   N  L L++E
Sbjct: 145 DMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKE 204

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
           ++ +   P  +T++  LSSCA LG+L +GK +   ++ +G      +N AL++M+A+CG 
Sbjct: 205 MESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGN 264

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           L  A  +FD M  K   +W+A+I  Y  HGQG  ++ +F+EM++  + PD   F+ +L A
Sbjct: 265 LKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSA 324

Query: 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
           CSH GL ++G +YF  M  KYG+ PG +HY CMVDLLGRAGRL+EA   I+ + +++   
Sbjct: 325 CSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGA 384

Query: 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455
           LW  LL +C  H N+ LA+   E++ EL+ ++ G YV+LSN+   AG  E +  +R LM+
Sbjct: 385 LWGALLGACKIHRNVELAELAFEQVIELEPTNTGYYVLLSNVYTEAGNLEGILRVRMLMR 444

Query: 456 DRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHH 515
            R + K PGCS +E    V  FF+GD  H  + ++ K L+EL         V D      
Sbjct: 445 KRKLKKDPGCSYVEFKGRVHLFFAGDRNHPQTNEIYKKLNELEN------LVKDLDGCKK 498

Query: 516 GDMEDEEKEI-ALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            D E  E+ + ++  HSEKLA+ F LLNT   T I ++KNLR+C
Sbjct: 499 NDHERREEYLNSMGVHSEKLAVAFALLNTRKETEIIIIKNLRIC 542



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 106/354 (29%), Positives = 181/354 (51%), Gaps = 14/354 (3%)

Query: 113 LLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172
           +L SG  P+ ++FP  +K+CA +       GKQLHC   K G     +V T+LI++Y +C
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPI--TGKQLHCHVFKTGCLLEPFVQTSLISMYGKC 58

Query: 173 SDVEAARRIFEN--ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLS 230
           S ++ AR++F+    S    V YN++++ YA +SR  + + LF E++E  ++   VTML 
Sbjct: 59  SLIDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLG 118

Query: 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290
            +  C + G+L LG  +H +  K+GLD    V   L+ M+ K G +D    +FD M  K 
Sbjct: 119 LVQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKG 178

Query: 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350
              W+AMI  YA +G  +  + +++EM      PD +T +G+L +C+H G +  G     
Sbjct: 179 LITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVER 238

Query: 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN- 409
            M + +G          +V++  R G L +A    D +P+KS  + W  ++     H   
Sbjct: 239 KM-EGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSV-VSWTAIIGGYGMHGQG 296

Query: 410 ---LGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW-EDVDYLRKLMKDRGV 459
              +GL  ++I    + D   G  +V + + C+ AG   + +DY   + +  G+
Sbjct: 297 EVAVGLFDEMIRGGIKPD---GTAFVSVLSACSHAGLTNKGLDYFGVMERKYGL 347


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 184/522 (35%), Positives = 294/522 (56%), Gaps = 9/522 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           +++HA    +    D  +   LI+ +C       S+  A  +FD +   D+V + ++  G
Sbjct: 71  RKVHAHLASSRFAGDAFLDNSLIHLYCK----CGSVLEARKVFDEMRRKDMVSWTSLIAG 126

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           Y+++  P  AI L   +L     P+ ++F SLLKA        +  G+Q+H  A+K   +
Sbjct: 127 YAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGI--GRQIHALAVKCDWH 184

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            ++YV + L+++YA C  ++ A  +F+ +     VS+NA+I+ +AR      AL  F E+
Sbjct: 185 EDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEM 244

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
                + T  T  S  SS A LG+L+ GKW+H ++ K            L+DM+AK G +
Sbjct: 245 LRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSM 304

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
            DA  VFD +  KD   W+ M+ A+A +G G +++  FEEM K+ +  +++TFL +L AC
Sbjct: 305 IDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTAC 364

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           SH GLV EG  YF  M++ Y + P I H+  +V LLGRAG L+ A  FI ++PI+ T  +
Sbjct: 365 SHGGLVKEGKRYFEMMKE-YDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAV 423

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
           W  LL++C  H N  + +   + +FELD    G  V+L N+ A  G+W+    +R++MK 
Sbjct: 424 WGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRRIMKT 483

Query: 457 RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHG 516
            GV K P CS +E+ N V  F + D  H  + ++ K   ++ K+++  GYVPD   V   
Sbjct: 484 TGVKKEPACSWVEMENSVHMFVANDDTHPRAEEIYKMWGQISKKIRKEGYVPDMDYVLL- 542

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            ++D+E+E  L+YHSEKLA+ F L+  P G TIR++KN+R+C
Sbjct: 543 RVDDQEREANLQYHSEKLALAFALIEMPAGATIRIMKNIRIC 584



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 176/348 (50%), Gaps = 14/348 (4%)

Query: 85  PDIVLFNTMARGY-SRSKTPI---RAIFLFVELLNSG-LLPDDYSFPSLLKACACVGAEA 139
           P+ +L     R Y S +  P+    A+   ++LL++G L P    + + + ACA   ++ 
Sbjct: 9   PNYLLLYRHTRPYTSTAANPVPAASAVLRDLDLLDAGELAPTPRVYHTFITACA--QSKN 66

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
           LE+ +++H          + ++  +LI+LY +C  V  AR++F+ +    +VS+ ++I  
Sbjct: 67  LEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAG 126

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
           YA++  P EA+ L   + +   KP   T  S L +        +G+ IH    K    + 
Sbjct: 127 YAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAVKCDWHED 186

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           V V +AL+DM+A+CG +D A +VFD +  K+  +W+A+I  +A  G G  +++ F EM++
Sbjct: 187 VYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLR 246

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
                   T+  +  + +  G +++G W + + ++ +  +     +   ++D+  ++G +
Sbjct: 247 NGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGN--TLLDMYAKSGSM 304

Query: 379 DEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
            +A +  D +  K   + W T+L++ + +   GL K+ +    E+  S
Sbjct: 305 IDARKVFDRVDDKDL-VTWNTMLTAFAQY---GLGKEAVSHFEEMRKS 348


>gi|413952609|gb|AFW85258.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
 gi|413952610|gb|AFW85259.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
 gi|413952611|gb|AFW85260.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
          Length = 630

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 217/551 (39%), Positives = 316/551 (57%), Gaps = 32/551 (5%)

Query: 27  LLPRCTSFRGLKQIHAVTIKTHLQNDLN----VLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           LLP  ++    KQ HA   + H    L+    +  + ++     P   ++ HA LL   +
Sbjct: 53  LLPHLSTLSHYKQFHA---RLHALGTLHSYPSLRARFLDRLALLPHADALPHALLLLRSL 109

Query: 83  PEPDIVLFNTMARGYSRSKTPIRA-----IFLFVELLNSGLLPDDYSFPSLLKACA-CVG 136
           P P    FN   RG + S  P R+       L           D  S    LKA A C  
Sbjct: 110 PSPATNDFNAALRGLAASPHPARSLLLLAGRLLPAPAPPRPRLDALSLSFALKATARCSD 169

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
           A A     QLH    +LG+ +++ + TTL++ YA+C DV +AR++F+ +    V ++NA+
Sbjct: 170 AFAT---LQLHATLFRLGVAADVRLMTTLLDSYAKCGDVASARKVFDEMPVRDVATWNAL 226

Query: 197 ITAYARSSRPNEALSL-------FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           +   A+ + PN AL L       FREL  R  +P  VT+++ALS+CA LG+L  G  +HE
Sbjct: 227 LAGLAQGTEPNLALLLFRRLAGSFRELPPRE-EPNAVTVVAALSACAQLGTLKDGLAVHE 285

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ--AWSAMIVAYATHGQG 307
           + +  G    V V  ALIDM++KCG L  A+ VF ++  +D    +++A I A + HG G
Sbjct: 286 FARTIGAVDNVCVGNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSIHGHG 345

Query: 308 HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367
             ++ +F+E M A++ PDEIT+L ++  C+H GLVD+G   F SMR    + P +KHYG 
Sbjct: 346 EDALKLFDE-MPARIEPDEITYLAVMGGCNHAGLVDDGRRVFDSMR----VPPNMKHYGT 400

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
           +VDLLGRAGRL EAY  I  +P  +  +LW+TLL +   H N+ LA+    ++ +L  + 
Sbjct: 401 IVDLLGRAGRLAEAYDMIMSMPFPADIVLWQTLLGAAKMHGNVDLAELAATKLADLGSNV 460

Query: 428 GGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYS 487
            GDYV+LSN+ A   RW DV  +R  M+   V KVPG S  E++ V+ +F +GD  H   
Sbjct: 461 DGDYVLLSNVYASKSRWVDVGRVRDTMRSNDVKKVPGFSYTEIDGVMHKFINGDKEHMRW 520

Query: 488 TDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGT 547
            ++ +ALDE+   +  +GY P+TS V H D+ +EEK+ AL YHSEKLAI FGL++TPPG 
Sbjct: 521 REIYRALDEIGSRICALGYEPETSNVLH-DIGEEEKQYALSYHSEKLAIAFGLISTPPGE 579

Query: 548 TIRVVKNLRVC 558
           TIRV+KNLR C
Sbjct: 580 TIRVIKNLRTC 590


>gi|242062828|ref|XP_002452703.1| hypothetical protein SORBIDRAFT_04g031000 [Sorghum bicolor]
 gi|241932534|gb|EES05679.1| hypothetical protein SORBIDRAFT_04g031000 [Sorghum bicolor]
          Length = 622

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 190/527 (36%), Positives = 305/527 (57%), Gaps = 9/527 (1%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           +++ HA  IK  +         L+  C  +     ME A  +F+ + EP+   +NT+ RG
Sbjct: 58  VRKAHARHIKLGVDRCPRHARPLLAACALSGWPGGMELAASIFESLVEPEAFDYNTLMRG 117

Query: 97  Y----SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
           +       + P  A+ L+V++L +G+ PD Y+FP +LKACA + +  L++G+QL     K
Sbjct: 118 HVGGGRGDREPAAALRLYVDMLEAGVGPDSYTFPFVLKACAQLAS--LQQGRQLQAHIEK 175

Query: 153 LGLNSNLYVCTTLINLYAECSDVEAARRIFENIS--EPCVVSYNAIITAYARSSRPNEAL 210
           LGL  + +V  +LI+ Y +C +   AR  F+ +   E    S++A++ AY ++    E L
Sbjct: 176 LGLQHDEHVQNSLISFYGKCGEPAMARLAFDRVEDEERTTASWSALLAAYTKAGLWGECL 235

Query: 211 SLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270
             F  +     +P + +M+SA+S+CA LG+ D+G+ IH  + +        + T+L+DM+
Sbjct: 236 ESFGAMVLDGWRPDESSMVSAISACAHLGAFDVGRSIHCALLRNTARLNTIMQTSLVDMY 295

Query: 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           AKCG ++ A +VFD M  K+  A+SAM+   A HG G K++ +F+ M++   +PD   ++
Sbjct: 296 AKCGSIEKAAAVFDAMDDKNAWAYSAMLSGLALHGDGRKALQVFDAMVREGHAPDAAAYV 355

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
           G+L ACS  GL+++G   F  MR ++   P  +HYGCMVDL+ RAGRLD+A   I  +P 
Sbjct: 356 GVLNACSRAGLLEDGLRCFDRMRLEHKFAPNAQHYGCMVDLMARAGRLDDARALIGSMPT 415

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL 450
             T   WR+LL++C  H +L LA+  +E +  L  ++ GDYVI++++ ARA  W      
Sbjct: 416 GPTDTAWRSLLNACRIHGDLDLAESALEELRSLGAANAGDYVIVADMHARAKNWAAAAAF 475

Query: 451 RKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT 510
           R    D G+ + PG S++EV   +  F S D  H  + D+ + L ++  +L+  GY PDT
Sbjct: 476 RTEAVDWGLAQSPGFSAVEVRGELHRFVSQDMSHPRTRDIYEMLHQMEWQLRFDGYRPDT 535

Query: 511 SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRV 557
           S V   D+ +EEK   +  HS+KLA+ FGLL+TP G  +RVV NLR+
Sbjct: 536 SEVAL-DVGEEEKRHVVAAHSQKLAMAFGLLSTPEGAPVRVVTNLRM 581



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 147/324 (45%), Gaps = 16/324 (4%)

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI---NLYAECSDVEAARRIFENISEPCVV 191
           V   +L+E ++ H   IKLG++        L+    L      +E A  IFE++ EP   
Sbjct: 50  VSVRSLDEVRKAHARHIKLGVDRCPRHARPLLAACALSGWPGGMELAASIFESLVEPEAF 109

Query: 192 SYNAIITAYARSSR----PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
            YN ++  +    R    P  AL L+ ++ E  + P   T    L +CA L SL  G+ +
Sbjct: 110 DYNTLMRGHVGGGRGDREPAAALRLYVDMLEAGVGPDSYTFPFVLKACAQLASLQQGRQL 169

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD--TQAWSAMIVAYATHG 305
             +I+K GL     V  +LI  + KCG    A   FD +  ++  T +WSA++ AY   G
Sbjct: 170 QAHIEKLGLQHDEHVQNSLISFYGKCGEPAMARLAFDRVEDEERTTASWSALLAAYTKAG 229

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY 365
              + +  F  M+     PDE + +  + AC+H G  D G +   ++      +  I   
Sbjct: 230 LWGECLESFGAMVLDGWRPDESSMVSAISACAHLGAFDVGRSIHCALLRNTARLNTIMQT 289

Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
             +VD+  + G +++A    D +  K+    +  +LS  + H +   A QV + +    +
Sbjct: 290 S-LVDMYAKCGSIEKAAAVFDAMDDKNA-WAYSAMLSGLALHGDGRKALQVFDAMVR--E 345

Query: 426 SHGGD---YVILSNLCARAGRWED 446
            H  D   YV + N C+RAG  ED
Sbjct: 346 GHAPDAAAYVGVLNACSRAGLLED 369



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 139/288 (48%), Gaps = 9/288 (3%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           P  L    +  S +  +Q+ A   K  LQ+D +V   LI+F  +    +    A L FDR
Sbjct: 151 PFVLKACAQLASLQQGRQLQAHIEKLGLQHDEHVQNSLISFYGKCGEPAM---ARLAFDR 207

Query: 82  IPEPD--IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEA 139
           + + +     ++ +   Y+++      +  F  ++  G  PD+ S  S + ACA +G  A
Sbjct: 208 VEDEERTTASWSALLAAYTKAGLWGECLESFGAMVLDGWRPDESSMVSAISACAHLG--A 265

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
            + G+ +HC  ++     N  + T+L+++YA+C  +E A  +F+ + +    +Y+A+++ 
Sbjct: 266 FDVGRSIHCALLRNTARLNTIMQTSLVDMYAKCGSIEKAAAVFDAMDDKNAWAYSAMLSG 325

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK-KYGLDK 258
            A      +AL +F  +      P     +  L++C+  G L+ G    + ++ ++    
Sbjct: 326 LALHGDGRKALQVFDAMVREGHAPDAAAYVGVLNACSRAGLLEDGLRCFDRMRLEHKFAP 385

Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNM-SGKDTQAWSAMIVAYATHG 305
             +    ++D+ A+ GRLDDA ++  +M +G    AW +++ A   HG
Sbjct: 386 NAQHYGCMVDLMARAGRLDDARALIGSMPTGPTDTAWRSLLNACRIHG 433


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 186/512 (36%), Positives = 285/512 (55%), Gaps = 30/512 (5%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSR-----------SKTPIRAIFLFVELLN----S 116
           M  A  LFDR+P  D+V +N M  GY+R              P+R +F +  +++    +
Sbjct: 209 MSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQN 268

Query: 117 GLL----------PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI 166
           G+L          P+  +        A +    ++E K+L      +    N+    T++
Sbjct: 269 GMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKEL----FNMMPCRNVASWNTML 324

Query: 167 NLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV 226
             YA+   +E A+ +F+ + +   VS+ A++ AY++     E L LF E+          
Sbjct: 325 TGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRS 384

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
                LS+CA + +L+ G  +H  + + G      V  AL+ M+ KCG ++DA + F+ M
Sbjct: 385 AFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEM 444

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
             +D  +W+ MI  YA HG G +++ +F+ M      PD+IT +G+L ACSH+GLV++G 
Sbjct: 445 EERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGI 504

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
           +YFYSM   +G+    +HY CM+DLLGRAGRL EA+  + ++P +    +W  LL +   
Sbjct: 505 SYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRI 564

Query: 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCS 466
           H N  L +   E+IFEL+  + G YV+LSN+ A +G+W D   +R +M++RGV KVPG S
Sbjct: 565 HRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFS 624

Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
            IEV N V  F +GD VH     +   L++L   +K  GYV  T +V H D+E+EEKE  
Sbjct: 625 WIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLH-DVEEEEKEHM 683

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           L+YHSEKLA+ +G+LN PPG  IRV+KNLRVC
Sbjct: 684 LKYHSEKLAVAYGILNIPPGRPIRVIKNLRVC 715



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 140/351 (39%), Gaps = 61/351 (17%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYS-RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
           A  LF  +P      +N M  GYS   + P+ A      L  +   PD+YS+ +LL A A
Sbjct: 57  AERLFAAMPRRSTSTYNAMLAGYSANGRLPLAA-----SLFRAIPRPDNYSYNTLLHALA 111

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
              + A   G       ++  +  N+     +I+ +A    V  AR  F+   E   VS+
Sbjct: 112 VSSSLADARG-LFDEMPVRDSVTYNV-----MISSHANHGLVSLARHYFDLAPEKDAVSW 165

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           N ++ AY R+ R  EA  LF    E                       D   W       
Sbjct: 166 NGMLAAYVRNGRVEEARGLFNSRTE----------------------WDAISW------- 196

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
                      AL+  + + G++ +A  +FD M G+D  +W+ M+  YA  G   ++  +
Sbjct: 197 ----------NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRL 246

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           F+    A    D  T+  ++   +  G+++E    F +M ++  +      +  MV    
Sbjct: 247 FD----AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAV-----SWNAMVAAYI 297

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
           +   +DEA    + +P ++    W T+L+  +    L  AK V + + + D
Sbjct: 298 QRRMMDEAKELFNMMPCRNVAS-WNTMLTGYAQAGMLEEAKAVFDTMPQKD 347



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 113/259 (43%), Gaps = 22/259 (8%)

Query: 166 INLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTD 225
           I  +     V  A R+F  +      +YNA++  Y+ + R   A SLFR +     +P +
Sbjct: 45  ITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP----RPDN 100

Query: 226 VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285
            +  + L + A+  SL   + + + +    +   V  N  +I  HA  G +  A   FD 
Sbjct: 101 YSYNTLLHALAVSSSLADARGLFDEMP---VRDSVTYNV-MISSHANHGLVSLARHYFDL 156

Query: 286 MSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
              KD  +W+ M+ AY  +G+  ++  +F     ++   D I++  L+     +G V   
Sbjct: 157 APEKDAVSWNGMLAAYVRNGRVEEARGLF----NSRTEWDAISWNALM-----SGYVQ-- 205

Query: 346 WNYFYSMRDKYGIVPG--IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
           W      R+ +  +PG  +  +  MV    R G + EA R  D  P++     W  ++S 
Sbjct: 206 WGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV-FTWTAVVSG 264

Query: 404 CSSHNNLGLAKQVIERIFE 422
            + +  L  A++V + + E
Sbjct: 265 YAQNGMLEEARRVFDAMPE 283



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 14/180 (7%)

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130
           +ME A   F+ + E D+V +NTM  GY+R      A+ +F  +  +   PDD +   +L 
Sbjct: 433 NMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLA 492

Query: 131 ACACVGAEALEEG-KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS-EP 188
           AC+  G   +E+G    +      G+ +     T +I+L      +  A  + +++  EP
Sbjct: 493 ACSHSG--LVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEP 550

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQER--NLKPTDVTMLSALSSCALLGSLDLGKW 246
               + A++ A    SR +    L R   E+   L+P +  M   LS+         GKW
Sbjct: 551 DSTMWGALLGA----SRIHRNPELGRSAAEKIFELEPENAGMYVLLSNI----YASSGKW 602


>gi|293334801|ref|NP_001169361.1| uncharacterized protein LOC100383228 [Zea mays]
 gi|224028917|gb|ACN33534.1| unknown [Zea mays]
          Length = 596

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 219/551 (39%), Positives = 319/551 (57%), Gaps = 32/551 (5%)

Query: 27  LLPRCTSFRGLKQIHAVTIKTHLQNDLN----VLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           LLP  ++    KQ HA   + H    L+    +  + ++     P   ++ HA LL   +
Sbjct: 19  LLPHLSTLSHYKQFHA---RLHALGTLHSYPSLRARFLDRLALLPHADALPHALLLLRSL 75

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP-----DDYSFPSLLKACA-CVG 136
           P P    FN   RG + S  P R++ L    L     P     D  S    LKA A C  
Sbjct: 76  PSPATNDFNAALRGLAASPHPARSLLLLAGRLLPAPAPPRPRLDALSLSFALKATARCSD 135

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
           A A     QLH    +LG+ +++ + TTL++ YA+C DV +AR++F+ +    V ++NA+
Sbjct: 136 AFAT---LQLHATLFRLGVAADVRLMTTLLDSYAKCGDVASARKVFDEMPVRDVATWNAL 192

Query: 197 ITAYARSSRPNEALSL-------FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           +   A+ + PN AL L       FREL  R  +P  VT+++ALS+CA LG+L  G  +HE
Sbjct: 193 LAGLAQGTEPNLALLLFRRLAGSFRELPPRE-EPNAVTVVAALSACAQLGTLKDGLAVHE 251

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ--AWSAMIVAYATHGQG 307
           + +  G    V V  ALIDM++KCG L  A+ VF ++  +D    +++A I A + HG G
Sbjct: 252 FARTIGAVDNVCVGNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSIHGHG 311

Query: 308 HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367
             ++ +F+EM  A++ PDEIT+L ++  C+H GLVD+G   F SMR    + P +KHYG 
Sbjct: 312 EDALKLFDEM-PARIEPDEITYLAVMGGCNHAGLVDDGRRVFDSMR----VPPNMKHYGT 366

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
           +VDLLGRAGRL EAY  I  +P  +  +LW+TLL +   H N+ LA+    ++ +L  + 
Sbjct: 367 IVDLLGRAGRLAEAYDMIMSMPFPADIVLWQTLLGAAKMHGNVDLAELAATKLADLGSNV 426

Query: 428 GGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYS 487
            GDYV+LSN+ A   RW DV  +R  M+   V KVPG S  E++ V+ +F +GD  H   
Sbjct: 427 DGDYVLLSNVYASKSRWVDVGRVRDTMRSNDVKKVPGFSYTEIDGVMHKFINGDKEHMRW 486

Query: 488 TDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGT 547
            ++ +ALDE+   +  +GY P+TS V H D+ +EEK+ AL YHSEKLAI FGL++TPPG 
Sbjct: 487 REIYRALDEIGSRICALGYEPETSNVLH-DIGEEEKQYALSYHSEKLAIAFGLISTPPGE 545

Query: 548 TIRVVKNLRVC 558
           TIRV+KNLR C
Sbjct: 546 TIRVIKNLRTC 556


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 186/512 (36%), Positives = 285/512 (55%), Gaps = 30/512 (5%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSR-----------SKTPIRAIFLFVELLN----S 116
           M  A  LFDR+P  D+V +N M  GY+R              P+R +F +  +++    +
Sbjct: 209 MSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQN 268

Query: 117 GLL----------PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI 166
           G+L          P+  +        A +    ++E K+L      +    N+    T++
Sbjct: 269 GMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKEL----FNMMPCRNVASWNTML 324

Query: 167 NLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV 226
             YA+   +E A+ +F+ + +   VS+ A++ AY++     E L LF E+          
Sbjct: 325 TGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRS 384

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
                LS+CA + +L+ G  +H  + + G      V  AL+ M+ KCG ++DA + F+ M
Sbjct: 385 AFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEM 444

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
             +D  +W+ MI  YA HG G +++ +F+ M      PD+IT +G+L ACSH+GLV++G 
Sbjct: 445 EERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGI 504

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
           +YFYSM   +G+    +HY CM+DLLGRAGRL EA+  + ++P +    +W  LL +   
Sbjct: 505 SYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRI 564

Query: 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCS 466
           H N  L +   E+IFEL+  + G YV+LSN+ A +G+W D   +R +M++RGV KVPG S
Sbjct: 565 HRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFS 624

Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
            IEV N V  F +GD VH     +   L++L   +K  GYV  T +V H D+E+EEKE  
Sbjct: 625 WIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLH-DVEEEEKEHM 683

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           L+YHSEKLA+ +G+LN PPG  IRV+KNLRVC
Sbjct: 684 LKYHSEKLAVAYGILNIPPGRPIRVIKNLRVC 715



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 102/437 (23%), Positives = 182/437 (41%), Gaps = 69/437 (15%)

Query: 68  TTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP--DDYSF 125
            +SS+  A  LFD +P  D V +N M   ++       A   F       L P  D  S+
Sbjct: 112 VSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYF------DLAPEKDAVSW 165

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
             +L A    G   +EE + L     +  + S       L++ Y +   +  AR +F+ +
Sbjct: 166 NGMLAAYVRNG--RVEEARGLFNSRTEWDVIS----WNALMSGYVQWGKMSEARELFDRM 219

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245
               VVS+N +++ YAR     EA  LF     R++     T  + +S  A  G L+  +
Sbjct: 220 PGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVVSGYAQNGMLEEAR 275

Query: 246 -------------W---IHEYIKKYGLD-----------KYVKVNTALIDMHAKCGRLDD 278
                        W   +  YI++  +D           + V     ++  +A+ G L++
Sbjct: 276 RVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEE 335

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A +VFD M  KD  +W+AM+ AY+  G   +++ +F EM +     +   F  +L  C+ 
Sbjct: 336 AKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCAD 395

Query: 339 TGLVDEGWNYFYSM-RDKYGIVPGIKHYGCMVD-----LLGRAGRLDEAYRFIDELPIKS 392
              ++ G      + R  YG+       GC V      +  + G +++A    +E+  + 
Sbjct: 396 IAALECGMQLHGRLIRAGYGV-------GCFVGNALLAMYFKCGNMEDARNAFEEMEERD 448

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFEL--DDSHGGDYVILSNL---CARAGRWED- 446
             + W T+++  + H   G  K+ +E IF++    S   D + L  +   C+ +G  E  
Sbjct: 449 V-VSWNTMIAGYARH---GFGKEALE-IFDMMRTTSTKPDDITLVGVLAACSHSGLVEKG 503

Query: 447 VDYLRKLMKDRGVLKVP 463
           + Y   +  D GV   P
Sbjct: 504 ISYFYSMHHDFGVTAKP 520



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 141/351 (40%), Gaps = 61/351 (17%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYS-RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
           A  LF  +P      +N M  GYS   + P+ A      L  +   PD+YS+ +LL A A
Sbjct: 57  AERLFAAMPRRSTSTYNAMLAGYSANGRLPLAA-----SLFRAIPRPDNYSYNTLLHALA 111

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
              + A   G       ++  +  N+     +I+ +A    V  AR  F+   E   VS+
Sbjct: 112 VSSSLADARG-LFDEMPVRDSVTYNV-----MISSHANHGLVSLARHYFDLAPEKDAVSW 165

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           N ++ AY R+ R  EA  LF    E                       D+  W       
Sbjct: 166 NGMLAAYVRNGRVEEARGLFNSRTE----------------------WDVISW------- 196

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
                      AL+  + + G++ +A  +FD M G+D  +W+ M+  YA  G   ++  +
Sbjct: 197 ----------NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRL 246

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           F+    A    D  T+  ++   +  G+++E    F +M ++  +      +  MV    
Sbjct: 247 FD----AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAV-----SWNAMVAAYI 297

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
           +   +DEA    + +P ++    W T+L+  +    L  AK V + + + D
Sbjct: 298 QRRMMDEAKELFNMMPCRNVAS-WNTMLTGYAQAGMLEEAKAVFDTMPQKD 347



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 113/259 (43%), Gaps = 22/259 (8%)

Query: 166 INLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTD 225
           I  +     V  A R+F  +      +YNA++  Y+ + R   A SLFR +     +P +
Sbjct: 45  ITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP----RPDN 100

Query: 226 VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285
            +  + L + A+  SL   + + + +    +   V  N  +I  HA  G +  A   FD 
Sbjct: 101 YSYNTLLHALAVSSSLADARGLFDEMP---VRDSVTYNV-MISSHANHGLVSLARHYFDL 156

Query: 286 MSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
              KD  +W+ M+ AY  +G+  ++  +F     ++   D I++  L+     +G V   
Sbjct: 157 APEKDAVSWNGMLAAYVRNGRVEEARGLF----NSRTEWDVISWNALM-----SGYVQ-- 205

Query: 346 WNYFYSMRDKYGIVPG--IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
           W      R+ +  +PG  +  +  MV    R G + EA R  D  P++     W  ++S 
Sbjct: 206 WGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV-FTWTAVVSG 264

Query: 404 CSSHNNLGLAKQVIERIFE 422
            + +  L  A++V + + E
Sbjct: 265 YAQNGMLEEARRVFDAMPE 283



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 14/180 (7%)

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130
           +ME A   F+ + E D+V +NTM  GY+R      A+ +F  +  +   PDD +   +L 
Sbjct: 433 NMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLA 492

Query: 131 ACACVGAEALEEG-KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS-EP 188
           AC+  G   +E+G    +      G+ +     T +I+L      +  A  + +++  EP
Sbjct: 493 ACSHSG--LVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEP 550

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQER--NLKPTDVTMLSALSSCALLGSLDLGKW 246
               + A++ A    SR +    L R   E+   L+P +  M   LS+         GKW
Sbjct: 551 DSTMWGALLGA----SRIHRNPELGRSAAEKIFELEPENAGMYVLLSNI----YASSGKW 602


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 198/522 (37%), Positives = 296/522 (56%), Gaps = 19/522 (3%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           +H   +K+  + D  +++ LI+         +   A  LF+     D+V +N M  GY +
Sbjct: 217 VHTHVVKSGFECDSYIVSSLIHLYANGKDLGA---AKQLFNLCSARDVVSWNAMIDGYVK 273

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
                 A  +F  ++      D  S+ +++   A VG   ++E K+L           NL
Sbjct: 274 HVEMGHARMVFDRMV----CRDVISWNTMINGYAIVGK--IDEAKRL----FDEMPERNL 323

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPC--VVSYNAIITAYARSSRPNEALSLFRELQ 217
               +++  + +C +VE A  +F  +  PC  VVS+N+++  YA+  +PNEAL+LF +++
Sbjct: 324 VSWNSMLAGFVKCGNVEDAFGLFSEM--PCRDVVSWNSMLACYAQCGKPNEALALFDQMR 381

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              +KPT+ T++S LS+CA LG+LD G  +H YI    ++    V TAL+DM+AKCG++ 
Sbjct: 382 AVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKIS 441

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            A  VF+ M  KD  AW+ +I   A HG   ++  +F+EM +A V P++ITF+ +L ACS
Sbjct: 442 LATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACS 501

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H G+VDEG      M   YGI P ++HYGC++DLL RAG L+EA   I  +P++  P   
Sbjct: 502 HAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSAL 561

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             LL  C  H N  L + V +R+  L   H G Y++LSN+ A A +W+D   +R LMK  
Sbjct: 562 GALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVN 621

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK-MVGYVPDTSLVHHG 516
           G+ KVPG S IE+  +V  F +GD  H  S  + + L+E+   LK  +GY  DT  V   
Sbjct: 622 GISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLL- 680

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           DME+E+KE AL  HSEKLAI +GLL+      IR+VKNLRVC
Sbjct: 681 DMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVC 722



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 129/455 (28%), Positives = 234/455 (51%), Gaps = 25/455 (5%)

Query: 1   MATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLI 60
           M+ TP+P    +PP     + P  LSL   C + R LKQ+HA  I  H  N    L+ L 
Sbjct: 83  MSRTPNP--LTNPP-----SNPQILSLFNPCKTLRHLKQVHAQIITHH--NSPFQLSALA 133

Query: 61  NFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP 120
           +    +P  + + +A  +F  +  P   L+N++ R  S SKTP+ A+ L+  +L SGL P
Sbjct: 134 SLSALSPFPTFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKP 193

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           D  ++P ++KAC    +     G  +H   +K G   + Y+ ++LI+LYA   D+ AA++
Sbjct: 194 DHMTYPFVIKACN--ESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQ 251

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
           +F   S   VVS+NA+I  Y +      A  +F  +  R++    ++  + ++  A++G 
Sbjct: 252 LFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDV----ISWNTMINGYAIVGK 307

Query: 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVA 300
           +D  K + + + +  L   V  N+ L     KCG ++DA  +F  M  +D  +W++M+  
Sbjct: 308 IDEAKRLFDEMPERNL---VSWNSMLAGF-VKCGNVEDAFGLFSEMPCRDVVSWNSMLAC 363

Query: 301 YATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP 360
           YA  G+ ++++ +F++M    V P E T + LL AC+H G +D+G +    + D    V 
Sbjct: 364 YAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVN 423

Query: 361 GIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
            I     +VD+  + G++  A +  + +  K   + W T+++  + H N+  A+Q+ + +
Sbjct: 424 SIVGTA-LVDMYAKCGKISLATQVFNAMESKDV-LAWNTIIAGMAIHGNVKEAQQLFKEM 481

Query: 421 FELD-DSHGGDYVILSNLCARAGRWEDVDYLRKLM 454
            E   + +   +V + + C+ AG    VD  +KL+
Sbjct: 482 KEAGVEPNDITFVAILSACSHAGM---VDEGQKLL 513



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/387 (22%), Positives = 163/387 (42%), Gaps = 61/387 (15%)

Query: 178 ARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL 237
           A+ IF ++  P    YN++I A + S  P EAL L+  + +  LKP  +T    + +C  
Sbjct: 148 AKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNE 207

Query: 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297
                 G  +H ++ K G +    + ++LI ++A    L  A  +F+  S +D  +W+AM
Sbjct: 208 SSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAM 267

Query: 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG 357
           I  Y  H +   + ++F+ M    V  D I++  ++   +  G +DE    F  M ++  
Sbjct: 268 IDGYVKHVEMGHARMVFDRM----VCRDVISWNTMINGYAIVGKIDEAKRLFDEMPER-- 321

Query: 358 IVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL---SSCSSHNN-LGLA 413
               +  +  M+    + G +++A+    E+P +   + W ++L   + C   N  L L 
Sbjct: 322 ---NLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDV-VSWNSMLACYAQCGKPNEALALF 377

Query: 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNV 473
            Q+  R   +  +      +LS  CA  G  +   +L   + D         + IEVN++
Sbjct: 378 DQM--RAVGVKPTEATVVSLLS-ACAHLGALDKGLHLHTYIND---------NRIEVNSI 425

Query: 474 VR----EFFSGDGVHSYSTDLQKALD------------------------ELVKELKMVG 505
           V     + ++  G  S +T +  A++                        +L KE+K  G
Sbjct: 426 VGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAG 485

Query: 506 YVPDT-------SLVHHGDMEDEEKEI 525
             P+        S   H  M DE +++
Sbjct: 486 VEPNDITFVAILSACSHAGMVDEGQKL 512


>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
          Length = 499

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 189/498 (37%), Positives = 286/498 (57%), Gaps = 38/498 (7%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K++HA  I + L    N L KLI   T   ++SS+ HA LLFD +  P   L+NTM R Y
Sbjct: 5   KRLHAHLITSGLHQQENHLRKLITLYTS--SSSSLHHARLLFDAVYHPSTYLYNTMFRVY 62

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           + S TP+ A+ L   +   G  PD Y+FP LLKAC+ +    L +G++LHC A+K GL  
Sbjct: 63  AASPTPLHALLLHRHMFRHGPPPDTYTFPFLLKACSALAH--LLKGQELHCQALKFGLGG 120

Query: 158 NLYV-------------------------------CTTLINLYAECSDVEAARRIFENIS 186
           +++V                                TTL+  YA    VEAAR++F+ + 
Sbjct: 121 HVFVENSLIHLYGSNSRMDSARRVFDGMGYRDIASWTTLLACYANSCSVEAARKVFDEMP 180

Query: 187 EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW 246
           E  VVSY+A++ AY R +R  EAL LFREL    ++P+D  ++S L +CA LG+LD+G+W
Sbjct: 181 ERSVVSYSAMLAAYVRGNRFREALELFRELFSVKIEPSDSCVMSVLCACANLGALDVGRW 240

Query: 247 IHEYIKKYGLDKYV--KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
           ++ ++     D YV  ++ TALIDM  KCG ++ A+ VF+    K    W+AM+   A H
Sbjct: 241 VYSFVCHSKGD-YVDSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAMH 299

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364
           G G + I  FE+M+ + + PDE+TF+ LL  CSH+GLV+EG  YF  M   +G+ P ++H
Sbjct: 300 GLGEQLIEAFEKMVDSGIKPDEVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVEH 359

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
           +GC+VDLLGRAG +D+A + I E+P +    +W  LL++C  + N+ + +   + + + +
Sbjct: 360 FGCVVDLLGRAGLIDQAMQLISEMPFEPNAAIWGALLNACRVYKNVEVGELAAQWLIKDE 419

Query: 425 DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVH 484
             +G  Y+ L +L   AGRW++V+ ++  MK+ G  K PGCS IEV  +  EF  GD  H
Sbjct: 420 PWNGALYMTLLSLYREAGRWDEVEKVKLKMKEVGCRKGPGCSLIEVGGICYEFVVGDKSH 479

Query: 485 SYSTDLQKALDELVKELK 502
             + ++   L +   E K
Sbjct: 480 PCAVEICLNLSKANMEFK 497



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 151/358 (42%), Gaps = 43/358 (12%)

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYA-ECSDVEAARRIFENISEPCVVSYNAIIT 198
           ++E K+LH   I  GL+        LI LY    S +  AR +F+ +  P    YN +  
Sbjct: 1   MQEAKRLHAHLITSGLHQQENHLRKLITLYTSSSSSLHHARLLFDAVYHPSTYLYNTMFR 60

Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
            YA S  P  AL L R +      P   T    L +C+ L  L  G+ +H    K+GL  
Sbjct: 61  VYAASPTPLHALLLHRHMFRHGPPPDTYTFPFLLKACSALAHLLKGQELHCQALKFGLGG 120

Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAW------------------------ 294
           +V V  +LI ++    R+D A  VFD M  +D  +W                        
Sbjct: 121 HVFVENSLIHLYGSNSRMDSARRVFDGMGYRDIASWTTLLACYANSCSVEAARKVFDEMP 180

Query: 295 -------SAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-W 346
                  SAM+ AY    +  +++ +F E+   ++ P +   + +L AC++ G +D G W
Sbjct: 181 ERSVVSYSAMLAAYVRGNRFREALELFRELFSVKIEPSDSCVMSVLCACANLGALDVGRW 240

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
            Y +    K   V   +    ++D+  + G ++ A    +    K     W  +LS  + 
Sbjct: 241 VYSFVCHSKGDYVDS-RIATALIDMFFKCGSIEHALLVFEGAKEKHVG-EWTAMLSGLAM 298

Query: 407 HNNLGLAKQVIERIFELDDS----HGGDYVILSNLCARAGRW-EDVDYLRKLMKDRGV 459
           H   GL +Q+IE   ++ DS        +V L + C+ +G   E + Y  ++  D GV
Sbjct: 299 H---GLGEQLIEAFEKMVDSGIKPDEVTFVALLSGCSHSGLVNEGLYYFDRMESDFGV 353


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 189/551 (34%), Positives = 305/551 (55%), Gaps = 15/551 (2%)

Query: 16  KLCTNTPNAL---SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTT 69
           ++C   P      S +  C S   +   KQ+H + +K  + ++L V + L +  ++    
Sbjct: 33  RICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSK---C 89

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
            +M  A  +F+ +P  D V +  M  GYS+      A+  F ++++  +  D +   S L
Sbjct: 90  GAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTL 149

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC 189
            AC  +  +A + G+ +H   +KLG  S+++V   L ++Y++  D+E+A  +F  I   C
Sbjct: 150 GACGAL--KACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVF-GIDSEC 206

Query: 190 --VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
             VVSY  +I  Y  + +  + LS+F EL+ + ++P + T  S + +CA   +L+ G  +
Sbjct: 207 RNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQL 266

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQG 307
           H  + K   D+   V++ L+DM+ KCG L+ A+  FD +      AW++++  +  HG G
Sbjct: 267 HAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLG 326

Query: 308 HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367
             +I +FE M+   V P+ ITF+ LL  CSH GLV+EG +YFYSM   YG+VPG +HY C
Sbjct: 327 KDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSC 386

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
           ++DLLGRAGRL EA  FI+ +P +     W + L +C  H +  + K   E++ +L+  +
Sbjct: 387 VIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKN 446

Query: 428 GGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYS 487
            G  V+LSN+ A   +WEDV  +R  M+D  V K+PG S ++V      F + D  H   
Sbjct: 447 SGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRK 506

Query: 488 TDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGT 547
           + + + LD L+ ++K  GYVP T  V   DM+D  KE  L  HSE++A+ F L++ P G 
Sbjct: 507 SAIYEKLDTLLDQIKAAGYVPRTDSVPL-DMDDSMKEKLLHRHSERIAVAFALISMPIGK 565

Query: 548 TIRVVKNLRVC 558
            I V KNLRVC
Sbjct: 566 PIIVKKNLRVC 576



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 105/192 (54%), Gaps = 1/192 (0%)

Query: 190 VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           +VS+ A+I+  +++S+ +EA+  F  ++     PT     SA+ +CA LGS+++GK +H 
Sbjct: 6   LVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHC 65

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
              K+G+   + V + L DM++KCG + DA  VF+ M  KD  +W+AMI  Y+  G+  +
Sbjct: 66  LALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEE 125

Query: 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369
           ++L F++M+  +V+ D+      L AC        G +   S+  K G    I     + 
Sbjct: 126 ALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVV-KLGFESDIFVGNALT 184

Query: 370 DLLGRAGRLDEA 381
           D+  +AG ++ A
Sbjct: 185 DMYSKAGDMESA 196


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 206/549 (37%), Positives = 314/549 (57%), Gaps = 18/549 (3%)

Query: 22  PNALSL---LPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PNA++L   L  CT+ R L   ++++ +     L+ D +V + LI   T       +E A
Sbjct: 131 PNAVTLSTALLACTAARNLALGRKLNELIASEALEIDSHVESSLI---TMYGRCREIEEA 187

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
              FDR PE D+V +  M   Y+ +    RA+ L   +   G+     ++ SLL ACA  
Sbjct: 188 ERAFDRSPEKDVVCWTAMISAYAHNWRTSRALELVRRMDLEGIKLGLPTYVSLLDACA-- 245

Query: 136 GAEALEEGKQLHCFAIKLGLN-SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
               L  G   H  A  +GL+ S+  V  TL+NLY +C  V+ ARR+ + +     VS+ 
Sbjct: 246 STMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWT 305

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           A+I AYA++    EA++LF+ +     +P+D+T++S + SCA+LG+L LGK IH  I+  
Sbjct: 306 AMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSS 365

Query: 255 -GLDKYVKVNTALIDMHAKCGRLDDAVSVFD--NMSGKDTQAWSAMIVAYATHGQGHKSI 311
               + + +  A+I M+ KCG L+ A  VF+   +  +    W+AMI AYA +G G ++I
Sbjct: 366 PSFSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVVTWTAMIRAYAQNGVGEEAI 425

Query: 312 LMFEEMM-KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370
            +F+EM+      P+ +TFL +L ACSH G +++ W +F SM   +G+ P   HY C+VD
Sbjct: 426 ELFQEMLIDGGTEPNRVTFLSVLCACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVD 485

Query: 371 LLGRAGRLDEAYRFI-DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429
           LLGRAGRL EA + +      ++  + W   LS+C  + +L  +++  +R+ EL+  +  
Sbjct: 486 LLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSELEPENVA 545

Query: 430 DYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTD 489
             V+LSN+ A  GR  DV  +R  MK  GV K  G S IE+NN V EF   D  H    +
Sbjct: 546 GRVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSWIEINNRVHEFMVSDVSHPRKLE 605

Query: 490 LQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTI 549
           +   L+ L +E+K  GYVPDT +V   D+++E+K   L YHSE+LA+  G+++TPPGTT+
Sbjct: 606 IYSELERLHREIKEAGYVPDTKMVLR-DVDEEKKVQLLGYHSERLAMALGIISTPPGTTL 664

Query: 550 RVVKNLRVC 558
           RVVKNLRVC
Sbjct: 665 RVVKNLRVC 673



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 157/315 (49%), Gaps = 15/315 (4%)

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
           + SLL  C       L+E ++LH       L+ N ++   L++ Y++   +  A+  F  
Sbjct: 38  YASLLWQC-----RGLDEVRKLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGR 92

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
           I+     S+N ++ AYA++  P  A +LF  +  + ++P  VT+ +AL +C    +L LG
Sbjct: 93  ITLHNAHSWNILMAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALG 152

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
           + ++E I    L+    V ++LI M+ +C  +++A   FD    KD   W+AMI AYA +
Sbjct: 153 RKLNELIASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHN 212

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR----DKYGIVP 360
            +  +++ +   M    +     T++ LL AC+ T  +  G  +         D+   V 
Sbjct: 213 WRTSRALELVRRMDLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVV 272

Query: 361 GIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
                G +V+L G+ GR+D+A R +D +P++ T + W  ++++ + + N   A  + +  
Sbjct: 273 A----GTLVNLYGKCGRVDDARRVLDAMPVR-TSVSWTAMIAAYAQNGNAAEAINLFQ-C 326

Query: 421 FELDDSHGGDYVILS 435
            +L+ +   D  ++S
Sbjct: 327 MDLEGAEPSDITLIS 341


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 176/486 (36%), Positives = 280/486 (57%), Gaps = 11/486 (2%)

Query: 31  CTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLF 90
           C     +K+IH +  K  L+ D+ + + L+N   +      MEHA + F+ +P  D+VL+
Sbjct: 149 CLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLK---FGLMEHAQVAFEELPIRDVVLW 205

Query: 91  NTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFA 150
           N M  GY++       +  F  + +  ++P  ++    L   A +G   L  G+ +H FA
Sbjct: 206 NAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGD--LNNGRIIHGFA 263

Query: 151 IKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEAL 210
           +K+G +S + V  +LI++Y +C  +E A  IFE + E  + S+N+I++ + +    +  L
Sbjct: 264 MKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTL 323

Query: 211 SLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK------VNT 264
            L   +    ++P  VT+ + L +C+ L +L  G+ IH Y+   GL K  K      +  
Sbjct: 324 RLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKN 383

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
           A+IDM+AKCG + DA  VF+ MS KD  +W+ MI+ Y  HG G++++ MF  M + Q+ P
Sbjct: 384 AVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKP 443

Query: 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF 384
           DE+TF+G+L ACSH G V +G N+   M+ KY + P I+HY C++D+LGRAG+LDEAY  
Sbjct: 444 DEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYEL 503

Query: 385 IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444
              +PI++ P++WR LL++C  H +  LA+   +R+FEL+  H G YV++SN+    GR+
Sbjct: 504 ALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRY 563

Query: 445 EDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMV 504
           E+V  +R  M+ + V K PGCS IE+ N V  F S D  H  +  +   L+ L   L   
Sbjct: 564 EEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRAHPEAXSIYAGLNSLTARLXEH 623

Query: 505 GYVPDT 510
           GYVPD 
Sbjct: 624 GYVPDV 629



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 175/357 (49%), Gaps = 25/357 (7%)

Query: 80  DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEA 139
           D   E ++  FN +  G+  +  P      + ++ N G++PD ++FP  +KAC  V    
Sbjct: 97  DPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDV---- 152

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
             E K++H    K GL  ++++ + L+N Y +   +E A+  FE +    VV +NA++  
Sbjct: 153 -LEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNG 211

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
           YA+  +    L  FR + + ++ P+  T+   LS  A++G L+ G+ IH +  K G D  
Sbjct: 212 YAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSG 271

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           V V+ +LIDM+ KC  ++DA+ +F+ M  KD  +W++++  +   G    ++ + + M+ 
Sbjct: 272 VAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLG 331

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG--IVPGIKHYG----------C 367
           A + PD +T   +L ACSH   +  G       R+ +G  IV G+   G           
Sbjct: 332 AGIQPDLVTVTTVLPACSHLAALMHG-------REIHGYMIVSGLGKDGKDIDDVLLKNA 384

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
           ++D+  + G + +A+   + +  K     W  ++     H     A ++  R+ E+ 
Sbjct: 385 VIDMYAKCGSMRDAHLVFERMSNKDVAS-WNIMIMGYGMHGYGNEALEMFSRMCEVQ 440


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 198/605 (32%), Positives = 315/605 (52%), Gaps = 74/605 (12%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           P  +      ++ +  KQ+H   + + L  D  VL+ L++   Q      ++ A  +FD+
Sbjct: 78  PTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQ---FDHLKDARNVFDK 134

Query: 82  IPEPDIVL-----------------------------------FNTMARGYSRSKTPIRA 106
           +P+P +V                                    +N M  G++RS + + A
Sbjct: 135 LPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDA 194

Query: 107 IFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI 166
           + +F  +   GL PD  S  S+L A   +    +  G Q+HC+ IK GL  + +V + LI
Sbjct: 195 VLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLM--GIQIHCYVIKQGLGPDKFVVSALI 252

Query: 167 NLYAECSDVEAARRIFENISE----PC-----------------------------VVSY 193
           ++Y +C+       +F  + E     C                             VVS+
Sbjct: 253 DMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSW 312

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
            ++I + +++ +  EAL LFRE+Q   +KP  VT+   L +C  + +L  GK  H +  +
Sbjct: 313 TSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLR 372

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
            G+   V V +ALIDM+AKCGR+  +   FD M  ++  +W++++  YA HG+  ++I +
Sbjct: 373 NGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINI 432

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           FE M +    PD ++F  +L AC+  GL +EGW YF SM   +G+   ++HY CMV LLG
Sbjct: 433 FELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLG 492

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI 433
           R+GRL+EAY  I ++P +    +W  LLSSC  HN + L +   +R+FEL+  + G+Y++
Sbjct: 493 RSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRNPGNYIL 552

Query: 434 LSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKA 493
           LSN+ A    W +VD +R +M+ RG+ K PG S IE+ N V    +GD  H     + + 
Sbjct: 553 LSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLLAGDSSHPQMPQIIEK 612

Query: 494 LDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVK 553
           L +L  E+K  GYVP T  V   D+E+++KE  L  HSEKLA+  GLLNT PG  ++V+K
Sbjct: 613 LAKLTVEMKKSGYVPHTDFVLQ-DVEEQDKEQILCGHSEKLAVVLGLLNTKPGFPLQVIK 671

Query: 554 NLRVC 558
           NLR+C
Sbjct: 672 NLRIC 676



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 117/473 (24%), Positives = 210/473 (44%), Gaps = 90/473 (19%)

Query: 62  FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPD 121
            C+    + S  HAH+L   I  P+ +        +S+       I +F  +L  G++PD
Sbjct: 20  LCSATKASLSQAHAHILKTGISLPETIQI------FSKLNHFGHVIRVFSYMLTQGIVPD 73

Query: 122 DYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRI 181
               P+++K CA +   AL+ GKQ+HCFA+  GL  +  V ++L+++Y +   ++ AR +
Sbjct: 74  SRVLPTVIKTCAAL--SALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNV 131

Query: 182 FENISEPCVVSYNAIITAYARSSRPNE--------------------------------- 208
           F+ + +P VV+ +A+I+ +AR  R  E                                 
Sbjct: 132 FDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSY 191

Query: 209 --ALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
             A+ +F+ +    LKP   ++ S L +   L    +G  IH Y+ K GL     V +AL
Sbjct: 192 LDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSAL 251

Query: 267 IDMHAKC-------------------------------GRLDDAVSVFDNMSGKDTQ--A 293
           IDM+ KC                               G +D+A+ VF    G D    +
Sbjct: 252 IDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVS 311

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSM 352
           W++MI + + +G+  +++ +F EM    V P+ +T   LL AC +   +  G   + +S+
Sbjct: 312 WTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSL 371

Query: 353 RDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGL 412
           R+  GI   +     ++D+  + GR+  +    D +P ++  + W +L++  + H   G 
Sbjct: 372 RN--GIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNL-VSWNSLMAGYAMH---GK 425

Query: 413 AKQVIERIFELDDSHGG--DYVILS---NLCARAGRWED-VDYLRKLMKDRGV 459
             + I  IFEL    G   D+V  +   + C + G  E+   Y   + ++ GV
Sbjct: 426 TFEAIN-IFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGV 477


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 185/540 (34%), Positives = 320/540 (59%), Gaps = 37/540 (6%)

Query: 26  SLLPRCTSFRG---LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           +LL  C + R     +QIHA  I+ ++  ++ V T+L++  ++      + +A  +F+R+
Sbjct: 283 TLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSE---CGRLNYAKEIFNRM 339

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
            E +   +N+M  GY ++     A+ LF ++  +G+ PD +S  S+L +C  V     ++
Sbjct: 340 AERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSC--VSLSDSQK 397

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI--SEPCVVSYNAIITAY 200
           G++LH F ++  +     +   L+++YA+C  ++ A ++++     +     +N+I+  Y
Sbjct: 398 GRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGY 457

Query: 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
           A      E+ + F E+ E +++   +TM++ ++   L                       
Sbjct: 458 ANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLLVL----------------------- 494

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
              TAL+DM++KCG +  A +VFDNM+GK+  +W+AMI  Y+ HG   ++++++EEM K 
Sbjct: 495 --ETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKK 552

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
            + P+E+TFL +L ACSHTGLV+EG   F SM++ Y I    +HY CMVDLLGRAGRL++
Sbjct: 553 GMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLED 612

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           A  F++++PI+     W  LL +C  H ++ + +   +R+FELD  + G YVI+SN+ A 
Sbjct: 613 AKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAA 672

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
           AGRW++V+ +R++MK +GV K PG S IE+N+ ++ F +G   H  + ++   L  L  +
Sbjct: 673 AGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQ 732

Query: 501 LKMVGYVPDTSLVHHG--DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            K +GY+PDTS +     D+++EE+E  L  HSE+LA++ GL++ P  +TIRV KNLR+C
Sbjct: 733 SKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRIC 792



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/433 (27%), Positives = 223/433 (51%), Gaps = 21/433 (4%)

Query: 4   TPSPPITQSPPPKLCTNTPNALSLLPRC---TSFRGLKQIHAVTIKTHLQNDLNVLTKLI 60
           +P P    + P       P + SL+  C    SF+  K IH   I      D  ++TK++
Sbjct: 55  SPKPTSIHTKPASDVNPLPYS-SLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKIL 113

Query: 61  NFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP 120
               ++     + +A  LF+ +PE ++  +NTM   Y+R    + A  +F  +L  G+ P
Sbjct: 114 MLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCP 173

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR 180
           D+++F S L+ C  +   + + GKQ+H   I  G   + +V   LI++YA+C D E+  +
Sbjct: 174 DNFTFASALRVCGAL--RSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLK 231

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQER--NLKPTDVTMLSALSSCALL 238
           +F+ + E   V++N+II+A A+    N+AL LF  +QE    ++P   T  + L+ CA  
Sbjct: 232 VFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQ 291

Query: 239 GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMI 298
            + + G+ IH ++ +  + K + V T L+ M+++CGRL+ A  +F+ M+ ++  +W++MI
Sbjct: 292 RNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMI 351

Query: 299 VAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC---SHTGLVDEGWNYFY-SMRD 354
             Y  +G+  +++ +F++M    + PD  +   +L +C   S +    E  N+   +  +
Sbjct: 352 EGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTME 411

Query: 355 KYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS-TPILWRTLLSSCSSHNNLGLA 413
           + GI+  +     +VD+  + G +D A++  D+   K     LW ++L   + + N GL 
Sbjct: 412 EEGILQVV-----LVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSIL---AGYANKGLK 463

Query: 414 KQVIERIFELDDS 426
           K+      E+ +S
Sbjct: 464 KESFNHFLEMLES 476



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 125/464 (26%), Positives = 222/464 (47%), Gaps = 41/464 (8%)

Query: 17  LCTNTPNALSLLPRCTSFR---GLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSME 73
           +C +     S L  C + R   G KQ+H+  I    + D  V   LI+   +       E
Sbjct: 171 VCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAK---CDDEE 227

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS--GLLPDDYSFPSLLKA 131
               +FD + E + V +N++    ++      A+ LF+ +  S  G+ PD ++F +LL  
Sbjct: 228 SCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTL 287

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           CA        +G+Q+H   I+  +  N+ V T L+++Y+EC  +  A+ IF  ++E    
Sbjct: 288 CA--NQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAY 345

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+N++I  Y ++    EAL LF+++Q   +KP   ++ S LSSC  L     G+ +H +I
Sbjct: 346 SWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFI 405

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD--TQAWSAMIVAYATHGQGHK 309
            +  +++   +   L+DM+AKCG +D A  V+D    KD  T  W++++  YA  G   +
Sbjct: 406 VRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKE 465

Query: 310 SILMFEEMMKAQVSPDEITFL----------GLLYACSHTGLVDEGWNYFYSMRDKYGIV 359
           S   F EM+++ +  D +T +           L+   S  G + +    F +M  K    
Sbjct: 466 SFNHFLEMLESDIEYDVLTMVTIVNLLVLETALVDMYSKCGAITKARTVFDNMNGK---- 521

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS---TPILWRTLLSSCSSHNNLGLAKQV 416
             I  +  M+    + G   EA    +E+P K      + +  +LS+CS   + GL ++ 
Sbjct: 522 -NIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACS---HTGLVEEG 577

Query: 417 IERIF---ELD---DSHGGDYVILSNLCARAGRWEDV-DYLRKL 453
           + RIF   + D   ++    Y  + +L  RAGR ED  +++ K+
Sbjct: 578 L-RIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKM 620


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 176/486 (36%), Positives = 282/486 (58%), Gaps = 11/486 (2%)

Query: 31  CTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLF 90
           C     +K+IH +  K  L+ D+ + + L+N   +      MEHA + F+ +P  D+VL+
Sbjct: 149 CLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLK---FGLMEHAQVAFEELPIRDVVLW 205

Query: 91  NTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFA 150
           N M  GY++       +  F  + +  ++P  ++   +L   A +G   L  G+ +H FA
Sbjct: 206 NAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGD--LNNGRIIHGFA 263

Query: 151 IKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEAL 210
           +K+G +S + V  +LI++Y +C  +E A  IFE + E  + S+N+I++ + +    +  L
Sbjct: 264 MKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTL 323

Query: 211 SLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK------VNT 264
            L   +    ++P  VT+ + L +C+ L +L  G+ IH Y+   GL K  K      +  
Sbjct: 324 RLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKN 383

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
           A+IDM+AKCG + DA  VF+ MS KD  +W+ MI+ Y  HG G++++ MF  M + Q+ P
Sbjct: 384 AVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKP 443

Query: 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF 384
           DE+TF+G+L ACSH G V +G N+   M+ KY + P I+HY C++D+LGRAG+LDEAY  
Sbjct: 444 DEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYEL 503

Query: 385 IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444
              +PI++ P++WR LL++C  H +  LA+   +R+FEL+  H G YV++SN+    GR+
Sbjct: 504 ALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRY 563

Query: 445 EDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMV 504
           E+V  +R  M+ + V K PGCS IE+ N V  F S D  H  +  +   L+ L   L+  
Sbjct: 564 EEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRAHPEAHSIYAGLNSLTARLREH 623

Query: 505 GYVPDT 510
           GYVPD 
Sbjct: 624 GYVPDV 629



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/400 (26%), Positives = 194/400 (48%), Gaps = 29/400 (7%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLF-DRIPEPDIVLFNTMARG 96
           K+IH+  +     N    +T LIN  ++    + M  A  +F D   E ++  FN +  G
Sbjct: 57  KEIHSYMLINGFLNSPLSITSLINMYSK---CNQMNFALSIFSDPTHEINVFAFNAIISG 113

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           +  +  P      + ++ N G++PD ++FP  +KAC  V      E K++H    K GL 
Sbjct: 114 FITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDV-----LEIKKIHGLLFKFGLE 168

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            ++++ + L+N Y +   +E A+  FE +    VV +NA++  YA+  +    L  FR +
Sbjct: 169 LDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRM 228

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
            + ++ P+  T+   LS  A++G L+ G+ IH +  K G D  V V+ +LIDM+ KC  +
Sbjct: 229 NDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCI 288

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           +DA+ +F+ M  KD  +W++++  +   G    ++ + + M+ A + PD +T   +L AC
Sbjct: 289 EDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPAC 348

Query: 337 SHTGLVDEGWNYFYSMRDKYG--IVPGIKHYG----------CMVDLLGRAGRLDEAYRF 384
           SH   +  G       R+ +G  IV G+   G           ++D+  + G + +A+  
Sbjct: 349 SHLAALMHG-------REIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLV 401

Query: 385 IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
            + +  K     W  ++     H     A ++  R+ E+ 
Sbjct: 402 FERMSNKDVAS-WNIMIMGYGMHGYGNEALEMFSRMCEVQ 440



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 137/274 (50%), Gaps = 11/274 (4%)

Query: 140 LEEGKQLHCFAIKLG-LNSNLYVCTTLINLYAECSDVEAARRIFEN-ISEPCVVSYNAII 197
           L +GK++H + +  G LNS L + T+LIN+Y++C+ +  A  IF +   E  V ++NAII
Sbjct: 53  LSKGKEIHSYMLINGFLNSPLSI-TSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAII 111

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
           + +  +  P E    +++++   + P   T   A+ +C  L  L++ K IH  + K+GL+
Sbjct: 112 SGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKAC--LDVLEIKK-IHGLLFKFGLE 168

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
             V + +AL++ + K G ++ A   F+ +  +D   W+AM+  YA  GQ    +  F  M
Sbjct: 169 LDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRM 228

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
               V P   T  G+L   +  G ++ G    +    K G   G+     ++D+ G+   
Sbjct: 229 NDESVVPSRFTVTGVLSVFAVMGDLNNG-RIIHGFAMKMGYDSGVAVSNSLIDMYGKCKC 287

Query: 378 LDEAYRFIDELPIKSTPILWRTLLS---SCSSHN 408
           +++A   I E+  +     W +++S    C  H+
Sbjct: 288 IEDALE-IFEMMREKDIFSWNSIVSVHEQCGDHD 320


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 210/616 (34%), Positives = 338/616 (54%), Gaps = 73/616 (11%)

Query: 9   ITQSPPPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQ 65
           ++   PP   T T    ++L  C +   L   +++H+  +K  L + ++V   L+N   +
Sbjct: 137 VSDDVPPTQFTLT----NVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAK 192

Query: 66  --NPTTSSM--------------------------EHAHLLFDRIPEPDIVLFNTMARGY 97
             +P T+ +                          + A + F+++ E D+V +N M  GY
Sbjct: 193 SGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGY 252

Query: 98  SRSKTPIRAIFLFVELL-NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           ++      A+ +F ++L +S   PD ++  S L ACA +  E L+ GKQ+H   I+   +
Sbjct: 253 NQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANL--ENLKLGKQIHAHIIRTEFD 310

Query: 157 -------------------------------SNLYVC--TTLINLYAECSDVEAARRIFE 183
                                          SNL V   T L++ Y +  D+  ARRIF+
Sbjct: 311 TFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFD 370

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
           ++    VV++ A+I  Y ++    +A+ LFR + +   KP + T+ + LS  + L SLD 
Sbjct: 371 SLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDH 430

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYA 302
           G+ IH    + G    V V+ ALI M+AK G ++DA  VF+ +  K DT  W++MI+A A
Sbjct: 431 GRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALA 490

Query: 303 THGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI 362
            HG G +++ +FE M++  + PD IT++G+L AC+H GLV++G +Y+  M++ + I+P  
Sbjct: 491 QHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTP 550

Query: 363 KHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
            HY CM+DL GRAG L EA+ FI+ +PI+   I W +LL+SC  H N+ LA+   ER+  
Sbjct: 551 SHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLL 610

Query: 423 LDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDG 482
           ++  + G Y  L+N+ +  G+WE+   +RK MKD+GV K  G S +++ N V  F   DG
Sbjct: 611 IEPENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDG 670

Query: 483 VHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLN 542
           +H     + + + ++ KE+K +G+VPDT  V H D+E+E KE  L +HSEKLAI FGL+ 
Sbjct: 671 LHPQRDAIYEMMAKIWKEIKKMGFVPDTESVLH-DLEEELKEQILSHHSEKLAIAFGLIC 729

Query: 543 TPPGTTIRVVKNLRVC 558
           TP  TT+R++KNLRVC
Sbjct: 730 TPENTTLRIMKNLRVC 745



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 133/516 (25%), Positives = 221/516 (42%), Gaps = 114/516 (22%)

Query: 3   TTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKL 59
           T+PS P T               S L R   F+     K IHA  IK  L   + ++  L
Sbjct: 10  TSPSDPYT---------------SFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNL 54

Query: 60  INFCTQN-------------PTTS---------------SMEHAHLLFDRIPEPDIVLFN 91
           +NF  +              P  S                +E AH +F+ +PEPD V + 
Sbjct: 55  MNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWT 114

Query: 92  TMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAI 151
            M  GY++      AI +F E+++  + P  ++  ++L +CA V  E L  G+++H F +
Sbjct: 115 AMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAV--ECLGIGRKVHSFVV 172

Query: 152 KLGLNSNLYVCTTLINLYAECSD-------------------------------VEAARR 180
           K GL+S + V  +L+N+YA+  D                               V+ A+ 
Sbjct: 173 KHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQV 232

Query: 181 IFENISEPCVVSYNAIITAYARSSRPNEALSLF-RELQERNLKPTDVTMLSALSSCALLG 239
            FE + E  VVS+NA+I+ Y +     EAL +F + L + + KP   T+ SALS+CA L 
Sbjct: 233 QFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLE 292

Query: 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG------------------------- 274
           +L LGK IH +I +   D +  V  ALI M++K G                         
Sbjct: 293 NLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTAL 352

Query: 275 -----RLDD---AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
                +L D   A  +FD++  +D  AW+AMIV Y  +G    ++ +F  M+K    P+ 
Sbjct: 353 LDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNN 412

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
            T   +L   S    +D G    ++   + G    +     ++ +  ++G +++A    +
Sbjct: 413 YTLATMLSVSSSLASLDHG-RQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFN 471

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
            +  K   I W +++ + + H     A  + ER+ E
Sbjct: 472 LIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLE 507



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 2/159 (1%)

Query: 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
           ++  +AK GRL++A  VF+ M   D+ +W+AMIV Y   GQ   +I MF EM+   V P 
Sbjct: 85  ILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPT 144

Query: 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI 385
           + T   +L +C+    +  G    +S   K+G+   I     ++++  ++G    A    
Sbjct: 145 QFTLTNVLASCAAVECLGIG-RKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVF 203

Query: 386 DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
           D + +KST   W T++SS      + LA+   E++ E D
Sbjct: 204 DRMKLKSTS-SWNTMISSHMQSGLVDLAQVQFEQMIERD 241


>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
          Length = 563

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 187/486 (38%), Positives = 282/486 (58%), Gaps = 4/486 (0%)

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
           +A  +FD +P+  +  +N M  G  + +     + LF E+   G  PD+Y+  S+    A
Sbjct: 41  NARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSA 100

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
             G  ++  G+Q+H + IK GL  +L V ++L ++Y     ++    +  ++    +V++
Sbjct: 101 --GLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAW 158

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           N +I   A++  P   L L++ ++    +P  +T ++ LSSC+ L     G+ IH    K
Sbjct: 159 NTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIK 218

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
            G    V V ++LI M++KCG L DA   F     +D   WS+MI AY  HGQG ++I +
Sbjct: 219 IGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIEL 278

Query: 314 FEEMM-KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           F  M  +  +  +E+ FL LLYACSH+GL D+G   F  M +KYG  PG+KHY C+VDLL
Sbjct: 279 FNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLL 338

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432
           GRAG LD+A   I  +PIK+  ++W+TLLS+C+ H N  +A++V + I ++D +    YV
Sbjct: 339 GRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYV 398

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
           +L+N+ A A RW DV  +RK M+D+ V K  G S  E    V +F  GD   S S ++  
Sbjct: 399 LLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYS 458

Query: 493 ALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVV 552
            L EL  E+K+ GY PDT+ V H DM++EEKE  L  HSEKLA+ F L+  P G  IR++
Sbjct: 459 YLKELTLEMKLKGYKPDTASVLH-DMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRII 517

Query: 553 KNLRVC 558
           KNLRVC
Sbjct: 518 KNLRVC 523



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 158/292 (54%), Gaps = 10/292 (3%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +QIH  TIK  L+ DL V + L +   +N     ++   ++   +P  ++V +NT+  G 
Sbjct: 109 QQIHGYTIKYGLELDLVVNSSLAHMYMRN---GKLQDGEIVIRSMPVRNLVAWNTLIMGN 165

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           +++  P   ++L+  +  SG  P+  +F ++L +C+ +      +G+Q+H  AIK+G +S
Sbjct: 166 AQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRG--QGQQIHAEAIKIGASS 223

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            + V ++LI++Y++C  +  A + F    +   V ++++I+AY    + +EA+ LF  + 
Sbjct: 224 VVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMA 283

Query: 218 ER-NLKPTDVTMLSALSSCALLGSLDLGKWIHE-YIKKYGLDKYVKVNTALIDMHAKCGR 275
           E+ N++  +V  L+ L +C+  G  D G  + +  ++KYG    +K  T ++D+  + G 
Sbjct: 284 EQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGC 343

Query: 276 LDDAVSVFDNMSGK-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           LD A ++  +M  K D   W  ++ A   H     +  +F+E++  Q+ P++
Sbjct: 344 LDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEIL--QIDPND 393



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 128/261 (49%), Gaps = 5/261 (1%)

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           N      LIN Y    D+  AR++F+ + +  + ++NA+I    +     E LSLFRE+ 
Sbjct: 22  NYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMH 81

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
                P + T+ S  S  A L S+ +G+ IH Y  KYGL+  + VN++L  M+ + G+L 
Sbjct: 82  GLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQ 141

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           D   V  +M  ++  AW+ +I+  A +G     + +++ M  +   P++ITF+ +L +CS
Sbjct: 142 DGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCS 201

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
              +  +G    ++   K G    +     ++ +  + G L +A +   E       ++W
Sbjct: 202 DLAIRGQG-QQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSERE-DEDEVMW 259

Query: 398 RTLLSSCSSHNNLGLAKQVIE 418
            +++S+   H   G   + IE
Sbjct: 260 SSMISAYGFH---GQGDEAIE 277


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 189/551 (34%), Positives = 305/551 (55%), Gaps = 15/551 (2%)

Query: 16  KLCTNTPNAL---SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTT 69
           ++C   P      S +  C S   +   KQ+H + +K  + ++L V + L +  ++    
Sbjct: 98  RICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSK---C 154

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
            +M  A  +F+ +P  D V +  M  GYS+      A+  F ++++  +  D +   S L
Sbjct: 155 GAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTL 214

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC 189
            AC  +  +A + G+ +H   +KLG  S+++V   L ++Y++  D+E+A  +F  I   C
Sbjct: 215 GACGAL--KACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVF-GIDSEC 271

Query: 190 --VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
             VVSY  +I  Y  + +  + LS+F EL+ + ++P + T  S + +CA   +L+ G  +
Sbjct: 272 RNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQL 331

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQG 307
           H  + K   D+   V++ L+DM+ KCG L+ A+  FD +      AW++++  +  HG G
Sbjct: 332 HAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLG 391

Query: 308 HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367
             +I +FE M+   V P+ ITF+ LL  CSH GLV+EG +YFYSM   YG+VPG +HY C
Sbjct: 392 KDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSC 451

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
           ++DLLGRAGRL EA  FI+ +P +     W + L +C  H +  + K   E++ +L+  +
Sbjct: 452 VIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKN 511

Query: 428 GGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYS 487
            G  V+LSN+ A   +WEDV  +R  M+D  V K+PG S ++V      F + D  H   
Sbjct: 512 SGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRK 571

Query: 488 TDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGT 547
           + + + LD L+ ++K  GYVP T  V   DM+D  KE  L  HSE++A+ F L++ P G 
Sbjct: 572 SAIYEKLDTLLDQIKAAGYVPRTDSVPL-DMDDSMKEKLLHRHSERIAVAFALISMPIGK 630

Query: 548 TIRVVKNLRVC 558
            I V KNLRVC
Sbjct: 631 PIIVKKNLRVC 641



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 127/441 (28%), Positives = 225/441 (51%), Gaps = 26/441 (5%)

Query: 34  FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM 93
            R  KQ+HA+ I         +   L+N  ++      ++HA  LFD +P+ ++V +  M
Sbjct: 21  LRRGKQLHALLICAGYTPCTFLTNHLVNMYSK---CGELDHALKLFDTMPQRNLVSWTAM 77

Query: 94  ARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL 153
             G S++     AI  F  +   G +P  ++F S ++ACA +G  ++E GKQ+HC A+K 
Sbjct: 78  ISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLG--SIEMGKQMHCLALKF 135

Query: 154 GLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV--VSYNAIITAYARSSRPNEALS 211
           G+ S L+V + L ++Y++C  +  A ++FE +  PC   VS+ A+I  Y++     EAL 
Sbjct: 136 GIGSELFVGSNLEDMYSKCGAMFDACKVFEEM--PCKDEVSWTAMIDGYSKIGEFEEALL 193

Query: 212 LFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271
            F+++ +  +      + S L +C  L +   G+ +H  + K G +  + V  AL DM++
Sbjct: 194 AFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYS 253

Query: 272 KCGRLDDAVSVFD-NMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           K G ++ A +VF  +   ++  +++ +I  Y    Q  K + +F E+ +  + P+E TF 
Sbjct: 254 KAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFS 313

Query: 331 GLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389
            L+ AC++   +++G   +   M+  +   P +     +VD+ G+ G L++A +  DE+ 
Sbjct: 314 SLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSI--LVDMYGKCGLLEQAIQAFDEIG 371

Query: 390 IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD-----YVILSNLCARAGRW 444
              T I W +L+S    H   GL K  I +IFE     G       ++ L   C+ AG  
Sbjct: 372 -DPTEIAWNSLVSVFGQH---GLGKDAI-KIFERMVDRGVKPNAITFISLLTGCSHAGLV 426

Query: 445 ED-VDYLRKLMKDRGVLKVPG 464
           E+ +DY   + K  GV  VPG
Sbjct: 427 EEGLDYFYSMDKTYGV--VPG 445


>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
 gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 565

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 187/486 (38%), Positives = 282/486 (58%), Gaps = 4/486 (0%)

Query: 74  HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
           +A  +FD +P+  +  +N M  G  + +     + LF E+   G  PD+Y+  S+    A
Sbjct: 43  NARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSA 102

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
             G  ++  G+Q+H + IK GL  +L V ++L ++Y     ++    +  ++    +V++
Sbjct: 103 --GLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAW 160

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           N +I   A++  P   L L++ ++    +P  +T ++ LSSC+ L     G+ IH    K
Sbjct: 161 NTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIK 220

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
            G    V V ++LI M++KCG L DA   F     +D   WS+MI AY  HGQG ++I +
Sbjct: 221 IGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIEL 280

Query: 314 FEEMM-KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           F  M  +  +  +E+ FL LLYACSH+GL D+G   F  M +KYG  PG+KHY C+VDLL
Sbjct: 281 FNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLL 340

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432
           GRAG LD+A   I  +PIK+  ++W+TLLS+C+ H N  +A++V + I ++D +    YV
Sbjct: 341 GRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYV 400

Query: 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQK 492
           +L+N+ A A RW DV  +RK M+D+ V K  G S  E    V +F  GD   S S ++  
Sbjct: 401 LLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYS 460

Query: 493 ALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVV 552
            L EL  E+K+ GY PDT+ V H DM++EEKE  L  HSEKLA+ F L+  P G  IR++
Sbjct: 461 YLKELTLEMKLKGYKPDTASVLH-DMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRII 519

Query: 553 KNLRVC 558
           KNLRVC
Sbjct: 520 KNLRVC 525



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 158/292 (54%), Gaps = 10/292 (3%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +QIH  TIK  L+ DL V + L +   +N     ++   ++   +P  ++V +NT+  G 
Sbjct: 111 QQIHGYTIKYGLELDLVVNSSLAHMYMRN---GKLQDGEIVIRSMPVRNLVAWNTLIMGN 167

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           +++  P   ++L+  +  SG  P+  +F ++L +C+ +      +G+Q+H  AIK+G +S
Sbjct: 168 AQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRG--QGQQIHAEAIKIGASS 225

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            + V ++LI++Y++C  +  A + F    +   V ++++I+AY    + +EA+ LF  + 
Sbjct: 226 VVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMA 285

Query: 218 ER-NLKPTDVTMLSALSSCALLGSLDLGKWIHE-YIKKYGLDKYVKVNTALIDMHAKCGR 275
           E+ N++  +V  L+ L +C+  G  D G  + +  ++KYG    +K  T ++D+  + G 
Sbjct: 286 EQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGC 345

Query: 276 LDDAVSVFDNMSGK-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           LD A ++  +M  K D   W  ++ A   H     +  +F+E++  Q+ P++
Sbjct: 346 LDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEIL--QIDPND 395



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 128/261 (49%), Gaps = 5/261 (1%)

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           N      LIN Y    D+  AR++F+ + +  + ++NA+I    +     E LSLFRE+ 
Sbjct: 24  NYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMH 83

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
                P + T+ S  S  A L S+ +G+ IH Y  KYGL+  + VN++L  M+ + G+L 
Sbjct: 84  GLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQ 143

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           D   V  +M  ++  AW+ +I+  A +G     + +++ M  +   P++ITF+ +L +CS
Sbjct: 144 DGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCS 203

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
              +  +G    ++   K G    +     ++ +  + G L +A +   E       ++W
Sbjct: 204 DLAIRGQG-QQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSERE-DEDEVMW 261

Query: 398 RTLLSSCSSHNNLGLAKQVIE 418
            +++S+   H   G   + IE
Sbjct: 262 SSMISAYGFH---GQGDEAIE 279


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 168/422 (39%), Positives = 266/422 (63%), Gaps = 3/422 (0%)

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
           +LEEG+++H      GL  ++ V T L+N+Y +C  VE AR  FE IS P VVS++A++ 
Sbjct: 25  SLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEEARAAFEKISRPNVVSWSAMLA 84

Query: 199 AYARSSRPNEALSLFREL--QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           AYA++     AL L+RE+    + + P  VT ++ L +C+ LG+L  G+ IH  + + G 
Sbjct: 85  AYAQNGHARMALELYREMGSARKGMAPNRVTFITLLDACSFLGALAEGRKIHAAVAERGF 144

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
           D  + V  AL++ + +CG L DA  VFD M  +D  +WS+MI A+A  G+  +++ ++  
Sbjct: 145 DTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHR 204

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M+     PD+I F+ +L+ACS++G+V+   ++F S+     + P ++HY CMVD+LGRAG
Sbjct: 205 MLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAG 264

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSN 436
           +L +A   +  +P    P+L+ T+LS+C  + ++   +   E +FELD  +   Y+ L+N
Sbjct: 265 KLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDPENSSPYITLAN 324

Query: 437 LCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDE 496
           + + A R +D   +RKLM++RG+ K PGCS IEV + V EF +GD +H    ++   +  
Sbjct: 325 IYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMHPQRDEIYAEIQR 384

Query: 497 LVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLR 556
           L +++K  GY  DT +V   D+E++EKE  L YHSEKLAI FGL++TPPG  +R+VKNLR
Sbjct: 385 LGRQMKEAGYFQDTKVVLQ-DVEEDEKENLLWYHSEKLAIAFGLISTPPGAPLRIVKNLR 443

Query: 557 VC 558
           VC
Sbjct: 444 VC 445



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 134/245 (54%), Gaps = 8/245 (3%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +++H+      L+ D+ V T L+N   +     S+E A   F++I  P++V ++ M   Y
Sbjct: 30  RRVHSRVAGAGLEVDVIVGTALVNMYGK---CQSVEEARAAFEKISRPNVVSWSAMLAAY 86

Query: 98  SRSKTPIRAIFLFVELLNS--GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155
           +++     A+ L+ E+ ++  G+ P+  +F +LL AC+ +GA  L EG+++H    + G 
Sbjct: 87  AQNGHARMALELYREMGSARKGMAPNRVTFITLLDACSFLGA--LAEGRKIHAAVAERGF 144

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
           +++L VC  L+N Y  C  +  A+ +F+ +    V+S++++I+A+A+  R +EA+ L+  
Sbjct: 145 DTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHR 204

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDL-GKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
           +      P D+  +S L +C+  G ++  G +    +    ++  ++    ++D+  + G
Sbjct: 205 MLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAG 264

Query: 275 RLDDA 279
           +L DA
Sbjct: 265 KLRDA 269



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 131/249 (52%), Gaps = 8/249 (3%)

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
           ++ R ++   VT ++ LS     GSL+ G+ +H  +   GL+  V V TAL++M+ KC  
Sbjct: 1   MEIRGVERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQS 60

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ--VSPDEITFLGLL 333
           +++A + F+ +S  +  +WSAM+ AYA +G    ++ ++ EM  A+  ++P+ +TF+ LL
Sbjct: 61  VEEARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLL 120

Query: 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
            ACS  G + EG     ++ ++ G    +     +V+  GR G L +A    D +  +  
Sbjct: 121 DACSFLGALAEGRKIHAAVAER-GFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDV 179

Query: 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL--CARAGRWE-DVDYL 450
            I W +++S+ +    +  A ++  R+   + +   D + +S L  C+ +G  E   D+ 
Sbjct: 180 -ISWSSMISAFAQRGRVDEAMELYHRMLS-EGTLPDDIIFISVLFACSNSGVVEASGDFF 237

Query: 451 RKLMKDRGV 459
           R ++ D  V
Sbjct: 238 RSIVGDTQV 246


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 186/512 (36%), Positives = 285/512 (55%), Gaps = 30/512 (5%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSR-----------SKTPIRAIFLFVELLN----S 116
           M  A  LFDR+P  D+V +N M  GY+R              P+R +F +  +++    +
Sbjct: 84  MSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQN 143

Query: 117 GLL----------PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI 166
           G+L          P+  +        A +    ++E K+L      +    N+    T++
Sbjct: 144 GMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKEL----FNMMPCRNVASWNTML 199

Query: 167 NLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV 226
             YA+   +E A+ +F+ + +   VS+ A++ AY++     E L LF E+          
Sbjct: 200 TGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRS 259

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
                LS+CA + +L+ G  +H  + + G      V  AL+ M+ KCG ++DA + F+ M
Sbjct: 260 AFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEM 319

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
             +D  +W+ MI  YA HG G +++ +F+ M      PD+IT +G+L ACSH+GLV++G 
Sbjct: 320 EERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGI 379

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
           +YFYSM   +G+    +HY CM+DLLGRAGRL EA+  + ++P +    +W  LL +   
Sbjct: 380 SYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRI 439

Query: 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCS 466
           H N  L +   E+IFEL+  + G YV+LSN+ A +G+W D   +R +M++RGV KVPG S
Sbjct: 440 HRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFS 499

Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
            IEV N V  F +GD VH     +   L++L   +K  GYV  T +V H D+E+EEKE  
Sbjct: 500 WIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLH-DVEEEEKEHM 558

Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           L+YHSEKLA+ +G+LN PPG  IRV+KNLRVC
Sbjct: 559 LKYHSEKLAVAYGILNIPPGRPIRVIKNLRVC 590



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 178/403 (44%), Gaps = 46/403 (11%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A   FD  PE D V +N M   Y R+     A  LF    NS    D  S+ +L+     
Sbjct: 25  ARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF----NSRTEWDVISWNALMSGYVQ 80

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
            G   + E ++L  F    G   ++     +++ YA   D+  ARR+F+      V ++ 
Sbjct: 81  WG--KMSEAREL--FDRMPG--RDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWT 134

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           A+++ YA++    EA  +F  + ERN          A+S  A++ +    + + E  + +
Sbjct: 135 AVVSGYAQNGMLEEARRVFDAMPERN----------AVSWNAMVAAYIQRRMMDEAKELF 184

Query: 255 GLD--KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
            +   + V     ++  +A+ G L++A +VFD M  KD  +W+AM+ AY+  G   +++ 
Sbjct: 185 NMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQ 244

Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM-RDKYGIVPGIKHYGCMVD- 370
           +F EM +     +   F  +L  C+    ++ G      + R  YG+       GC V  
Sbjct: 245 LFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV-------GCFVGN 297

Query: 371 ----LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL--D 424
               +  + G +++A    +E+  +   + W T+++  + H   G  K+ +E IF++   
Sbjct: 298 ALLAMYFKCGNMEDARNAFEEMEERDV-VSWNTMIAGYARH---GFGKEALE-IFDMMRT 352

Query: 425 DSHGGDYVILSNL---CARAGRWED-VDYLRKLMKDRGVLKVP 463
            S   D + L  +   C+ +G  E  + Y   +  D GV   P
Sbjct: 353 TSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKP 395



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 105/262 (40%), Gaps = 49/262 (18%)

Query: 163 TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK 222
             +I+ +A    V  AR  F+   E   VS+N ++ AY R+ R  EA  LF    E    
Sbjct: 10  NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTE---- 65

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
                              D+  W                  AL+  + + G++ +A  +
Sbjct: 66  ------------------WDVISW-----------------NALMSGYVQWGKMSEAREL 90

Query: 283 FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342
           FD M G+D  +W+ M+  YA  G   ++  +F+    A    D  T+  ++   +  G++
Sbjct: 91  FDRMPGRDVVSWNIMVSGYARRGDMVEARRLFD----AAPVRDVFTWTAVVSGYAQNGML 146

Query: 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
           +E    F +M ++  +      +  MV    +   +DEA    + +P ++    W T+L+
Sbjct: 147 EEARRVFDAMPERNAV-----SWNAMVAAYIQRRMMDEAKELFNMMPCRNVAS-WNTMLT 200

Query: 403 SCSSHNNLGLAKQVIERIFELD 424
             +    L  AK V + + + D
Sbjct: 201 GYAQAGMLEEAKAVFDTMPQKD 222



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 10/169 (5%)

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
            +ME A   F+ + E D+V +NTM  GY+R      A+ +F  +  +   PDD +   +L
Sbjct: 307 GNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVL 366

Query: 130 KACACVGAEALEEG-KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS-E 187
            AC+  G   +E+G    +      G+ +     T +I+L      +  A  + +++  E
Sbjct: 367 AACSHSG--LVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFE 424

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQER--NLKPTDVTMLSALSS 234
           P    + A++ A    SR +    L R   E+   L+P +  M   LS+
Sbjct: 425 PDSTMWGALLGA----SRIHRNPELGRSAAEKIFELEPENAGMYVLLSN 469


>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 183/494 (37%), Positives = 285/494 (57%), Gaps = 45/494 (9%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           LK+ HA+ IK  L     ++TK+I+ C +N     M++A  LF  + +P+  L+N M R 
Sbjct: 4   LKKNHALVIKYALSQSNFLVTKMIDVCDRN---EDMDYASFLFKEVIDPNAYLYNAMIRA 60

Query: 97  YSRSKTPIRAIFLFVELL----NSG-----LLPDDYSFPSLLKACACVGAEALEEGKQLH 147
            + +      I  + ++L    NS      +LPD+++FP ++KACA +G   L  GKQ+H
Sbjct: 61  CTHNSMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNL--GKQVH 118

Query: 148 CFAIKLGLNSNLYVCTTLINLYAECSDV-------------------------------E 176
               K G  S+L     LI++Y +C ++                                
Sbjct: 119 AQFFKFGKKSHLITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMR 178

Query: 177 AARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236
            AR +F+ +    +VS+ AII+ Y R     +AL +FRE+Q   ++P + +++S L +CA
Sbjct: 179 RARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACA 238

Query: 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSA 296
            LG+L+ GKWIH +  + GL +   +  ALI+M+ KCG +D A  +FD M G+D  +WS 
Sbjct: 239 KLGALETGKWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWST 298

Query: 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKY 356
           MI   A HG+  ++I +FE M +  + P+ ITF+GLL AC+H G  +EG  YF +M+  +
Sbjct: 299 MIGGLANHGKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEGLMYFDTMKKDF 358

Query: 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQV 416
            I P I+HYG +VDLLGRAGRL +A   ++++P+K    +W +LLSSC +H N+ +A   
Sbjct: 359 HIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKPDSKIWGSLLSSCRTHCNIEVAVIA 418

Query: 417 IERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVRE 476
           +E + EL+    G+YV+LSN+ A  G+W+DV  +RKL++ + + K PGCS IEVNNV +E
Sbjct: 419 MEHLEELEPDDTGNYVLLSNIYADLGKWDDVSRMRKLVRSKRMKKTPGCSLIEVNNVAQE 478

Query: 477 FFSGDGVHSYSTDL 490
           F SGD    YS ++
Sbjct: 479 FVSGDDSKPYSKEI 492


>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 538

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 184/491 (37%), Positives = 294/491 (59%), Gaps = 38/491 (7%)

Query: 27  LLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP- 85
           LL  C++ + L Q HA  +   L +D N+L  L  F   + +     +A+ LF  +  P 
Sbjct: 17  LLNHCSNLKHLHQTHAFMLCRALDHD-NLLLSL--FIQSSSSLGFSLYAYSLFTSLTHPP 73

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
           +I L+NT+ R  S S  P  +IFLF  + ++ L PD YSFP  LKA   +   A + G Q
Sbjct: 74  NIFLYNTIIRALSLSPQPSLSIFLFNRIQSARLRPDSYSFPFALKAV--IRLSATKTGLQ 131

Query: 146 LHCFAIKLGLNSNLYVCTTLINLY--------------------------------AECS 173
            H  AI+ GL+S+L+V  +LI +Y                                A+  
Sbjct: 132 FHSQAIRFGLHSHLHVLVSLIRMYSSSHISDARKLFDGIPLTARNVALWNAMLTSYAKIC 191

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
           D+  A+ +F+++ +  ++S+ A+I+ YA  +RP++A+++FR +Q +N+ P ++T+L+ LS
Sbjct: 192 DMPNAQHLFDSMPQRNLISWTALISGYAHINRPHQAIAIFRTMQLQNVVPDEITLLAVLS 251

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
           +CA LG+L+LG+WI  YI  +GL + V ++ ALIDM+AK G +  A+ +F++M  K    
Sbjct: 252 ACAQLGALELGEWIRNYIDIHGLHRNVPLHNALIDMYAKSGNIKRALLIFESMKHKTIVT 311

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           W+ MI   A HG G +++ MF  M + +V P+EITF+ +L ACSH GLV    ++F +MR
Sbjct: 312 WTTMIAGLALHGLGTQALEMFSRMERDRVKPNEITFIAVLSACSHVGLVQLARSFFTNMR 371

Query: 354 DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413
            +Y I P I+HYGCM+DLLGRAG L EA + + ++P +    +W +LL++  +H +  L 
Sbjct: 372 SRYTIQPKIEHYGCMIDLLGRAGYLQEAQQLLQQMPFEPNAAIWGSLLAASYTHGDAMLG 431

Query: 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNV 473
           ++ ++ + EL+ ++ G+Y +LSN+ A  GRW+    +RK+M+DRGV K+PG S IEVNN 
Sbjct: 432 ERTLKHLIELEPNNSGNYALLSNIYASLGRWKASRIVRKMMRDRGVKKIPGGSFIEVNNR 491

Query: 474 VREFFSGDGVH 484
           V EF +G+  H
Sbjct: 492 VNEFIAGETSH 502


>gi|357439099|ref|XP_003589826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478874|gb|AES60077.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 526

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 195/508 (38%), Positives = 292/508 (57%), Gaps = 42/508 (8%)

Query: 31  CTSFRGLKQIHAVTIKTHL-QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR-IPEPDIV 88
           CT+   L+Q H   +K  L QND+N L++ I+  T +    S  ++   F+   P P  V
Sbjct: 23  CTTLTHLQQTHTFILKHALFQNDIN-LSRFIH-KTASLNYPSYSYSIFTFNHNRPFPIFV 80

Query: 89  LFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHC 148
             N +   YS +     +IF  V  L  GL  D YS P +LK+  C+    L  GKQ+HC
Sbjct: 81  YNNIIYALYSSNAKLAVSIFRSVRRL--GLSFDSYSLPYVLKSVVCLNDFGL--GKQIHC 136

Query: 149 FAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS-EPCVV---------------- 191
             +  GL+ N+ VC++LI +Y+ C DV +AR++F+      CV+                
Sbjct: 137 VGVVTGLDKNVSVCSSLIQMYS-CYDVCSARKLFDEFGGNGCVLNAMIVAYVKVGDVSNA 195

Query: 192 ---------------SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236
                          S+ A+I+ Y ++  PNEA+ LFR +Q  N+KP ++ +L+ LS+CA
Sbjct: 196 RKLFDSMLERDKDVFSWTAMISGYTQAHNPNEAIKLFRRMQLENVKPDEIAILAVLSACA 255

Query: 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSA 296
            LG+L LG+WIH YI+K+ L K V +  +LIDM+AK G +  A+ +F+NM  K    W+ 
Sbjct: 256 DLGALHLGEWIHNYIEKHKLSKIVPLYNSLIDMYAKSGNIRKALELFENMKHKTIITWTT 315

Query: 297 MIVAYATHGQGHKSILMFEEMMKA-QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355
           MI   A HG G +++ +F  M K  +V P+E+TF+ +L ACSH GLV+ G +YF SMR +
Sbjct: 316 MIAGLALHGLGKEALRVFSCMEKEDRVKPNEVTFIAILSACSHVGLVELGRDYFTSMRSR 375

Query: 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQ 415
           YGI P I+HYGCM+DLLGRAG L EA   +  +P ++   +W +LL++ +   +  LA++
Sbjct: 376 YGIEPKIEHYGCMIDLLGRAGHLQEAKEMVLRMPFEANAAIWGSLLAASTRCGDAELAEE 435

Query: 416 VIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVR 475
            +  +  L+  H G+Y +LSN  A  GRW +   +RK+M+D GV KVPG S IEVNN+V 
Sbjct: 436 ALRHLTVLEPGHCGNYSLLSNTYASLGRWNESRMVRKVMQDAGVEKVPGVSFIEVNNIVY 495

Query: 476 EFFSGDGVHSYSTDLQKALDELVKELKM 503
           EF +GD +  Y  D+   L  L  ++K+
Sbjct: 496 EFIAGDKLSIYFVDIYDVLHSLDGQIKI 523


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 183/529 (34%), Positives = 302/529 (57%), Gaps = 13/529 (2%)

Query: 33  SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNT 92
           S RG+K++    + +  + DL V+ +++     +     M  A  LFD +PE D+  + T
Sbjct: 132 SIRGVKRVFNYMVNSGFEPDLYVMNRVLFV---HVKCGLMLDARKLFDEMPEKDMASWMT 188

Query: 93  MARGYSRSKTPIRAIFLFV---ELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCF 149
           M  G+  S     A  LF+   E  N G      +F ++++A A +G   ++ G+Q+H  
Sbjct: 189 MIGGFVDSGNFSEAFGLFLCMWEEFNDG---RSRTFTTMIRASAGLGL--VQVGRQIHSC 243

Query: 150 AIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEA 209
           A+K G+  + +V   LI++Y++C  +E A  +F+ + E   V +N+II +YA      EA
Sbjct: 244 ALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEA 303

Query: 210 LSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDM 269
           LS + E+++   K    T+   +  CA L SL+  K  H  + + G D  +  NTAL+D 
Sbjct: 304 LSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIVANTALVDF 363

Query: 270 HAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITF 329
           ++K GR++DA  VF+ M  K+  +W+A+I  Y  HGQG +++ MFE+M++  + P+ +TF
Sbjct: 364 YSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVTF 423

Query: 330 LGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389
           L +L ACS++GL + GW  FYSM   + + P   HY CMV+LLGR G LDEAY  I   P
Sbjct: 424 LAVLSACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYELIRSAP 483

Query: 390 IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDY 449
            K T  +W TLL++C  H NL L K   E ++ ++     +Y++L NL   +G+ ++   
Sbjct: 484 FKPTTNMWATLLTACRMHENLELGKLAAENLYGMEPEKLCNYIVLLNLYNSSGKLKEAAG 543

Query: 450 LRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPD 509
           + + +K +G+  +P C+ IEV      F  GD  HS + ++ + ++ ++ E+   GYV +
Sbjct: 544 VLQTLKRKGLRMLPACTWIEVKKQSYAFLCGDKSHSQTKEIYEKVNNMMVEISRHGYVEE 603

Query: 510 TSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
              +   D+++EE+ I L+YHSEKLAI FGL+NTP  T +++ +  RVC
Sbjct: 604 NKAL-LPDVDEEEQRI-LKYHSEKLAIAFGLINTPHWTPLQITQGHRVC 650



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 153/326 (46%), Gaps = 26/326 (7%)

Query: 107 IFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI 166
           +F  +EL + G      ++ +L+ AC  VG  ++   K++  + +  G   +LYV   ++
Sbjct: 102 LFEILELEHDGFDVGGSTYDALVSAC--VGLRSIRGVKRVFNYMVNSGFEPDLYVMNRVL 159

Query: 167 NLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV 226
            ++ +C  +  AR++F+ + E  + S+  +I  +  S   +EA  LF  + E        
Sbjct: 160 FVHVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSR 219

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
           T  + + + A LG + +G+ IH    K G+     V+ ALIDM++KCG ++DA  VFD M
Sbjct: 220 TFTTMIRASAGLGLVQVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQM 279

Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC---------- 336
             K T  W+++I +YA HG   +++  + EM  +    D  T   ++  C          
Sbjct: 280 PEKTTVGWNSIIASYALHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAK 339

Query: 337 -SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
            +H  LV  G++              I     +VD   + GR+++A+   + +  K+  I
Sbjct: 340 QAHAALVRRGYD------------TDIVANTALVDFYSKWGRMEDAWHVFNRMRRKNV-I 386

Query: 396 LWRTLLSSCSSHNNLGLAKQVIERIF 421
            W  L++   +H     A ++ E++ 
Sbjct: 387 SWNALIAGYGNHGQGEEAVEMFEQML 412


>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
 gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
          Length = 547

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 184/528 (34%), Positives = 301/528 (57%), Gaps = 46/528 (8%)

Query: 15  PKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEH 74
           P L      A++ L  C +FR L + H + ++  L     V T++++ C  +   +   H
Sbjct: 4   PSLWQLEDAAIARLRACATFRDLLRAHGLAVRLCLSQSSYVATQIVHVCNGHGRAA---H 60

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL-------NSG--LLPDDYSF 125
           A  +F  +P P++ L N M + Y+++     A+ ++V +L       +SG   + D +++
Sbjct: 61  AARVFAHVPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPDPSSSGGFSVGDRFTY 120

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
           P LLKAC  + A  L  G+Q+H    + G  S+  V  +LI +Y  C D+  AR++F+ +
Sbjct: 121 PFLLKACGGLAASQL--GRQVHAHVARSGCESHAIVQNSLIEMYTRCGDLSLARKVFDGM 178

Query: 186 SEPCVVSYNAIITAYAR-----------SSRPNE--------------------ALSLFR 214
            E   VS+N +I+A+AR            S P++                    A+ +FR
Sbjct: 179 REKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVFR 238

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
           ++Q    +P DV++++ L +CA LG+L+LG+WI+ Y  K+G+   + +  AL++M+AKCG
Sbjct: 239 QMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEMYAKCG 298

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEM-MKAQVSPDEITFLGLL 333
            +++A+ +F  MS KD  +WS  I   A HG+  +++ +FE M  + +V P+ ITF+GLL
Sbjct: 299 CIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNGITFVGLL 358

Query: 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
            ACSH GL+DEG  YF  M+++YG+ P ++HYGC+VDLLGR+GR+  A   I  +PI   
Sbjct: 359 SACSHAGLLDEGLRYFDRMKEEYGVEPSVEHYGCVVDLLGRSGRIQRALDTIGGMPIPPD 418

Query: 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKL 453
             +W +LLS+C SH+++  A    ER+ EL+    G+ V+L+N+ A AGRW +V   RK 
Sbjct: 419 GKIWGSLLSACRSHSDVDTAVVAAERLVELEPEDVGNLVMLANVYAAAGRWGNVASTRKE 478

Query: 454 MKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           ++ R   K PGCS IEV+NVVREF +G+ +      +   +D L  +L
Sbjct: 479 IRSRSTRKTPGCSMIEVDNVVREFVAGEDLGPELGGIAAIIDILASQL 526


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 183/478 (38%), Positives = 283/478 (59%), Gaps = 7/478 (1%)

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
           D V +N M     + +  + A+ LF E++  GL  D ++  S+L A  CV  + L  G Q
Sbjct: 207 DEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCV--KDLVGGMQ 264

Query: 146 LHCFAIKLGLNSNLYVCTTLINLYAECSD-VEAARRIFENISEPCVVSYNAIITAYARSS 204
            H   IK G + N +V + LI+LY++C+  +   R++FE I+ P +V +N +I+ +++  
Sbjct: 265 FHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYE 324

Query: 205 RPNE-ALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD-KYVKV 262
             +E  +  FRE+Q     P D + +   S+C+ L S  +GK +H    K  +    V V
Sbjct: 325 DLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSV 384

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
           N AL+ M++KCG + DA  VFD M   +  + ++MI  YA HG   +S+ +FE M++  +
Sbjct: 385 NNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDI 444

Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
           +P+ ITF+ +L AC HTG V+EG  YF  M++++ I P  +HY CM+DLLGRAG+L EA 
Sbjct: 445 APNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAE 504

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
           R I+ +P     I W TLL +C  H N+ LA +      +L+  +   YV+LSN+ A A 
Sbjct: 505 RIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAA 564

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           RWE+   +++LM++RGV K PGCS IE++  V  F + D  H    ++   + E+++++K
Sbjct: 565 RWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGEILRKMK 624

Query: 503 MVGYVPDT--SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             GYVPD   +LV   ++E +EKE  L YHSEKLA+ FGL++T     I VVKNLR+C
Sbjct: 625 QAGYVPDIRWALVKDEEVEPDEKERRLLYHSEKLAVAFGLISTEEWVPILVVKNLRIC 682



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 155/290 (53%), Gaps = 8/290 (2%)

Query: 36  GLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMAR 95
           G  Q H + IK+    + +V + LI+  ++      M     +F+ I  PD+VL+NTM  
Sbjct: 261 GGMQFHGMMIKSGFHGNSHVGSGLIDLYSK--CAGGMVECRKVFEEIAAPDLVLWNTMIS 318

Query: 96  GYSRSKTPIR-AIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
           G+S+ +      I+ F E+ ++G  PDD SF  +  AC+ + + ++  GKQ+H  AIK  
Sbjct: 319 GFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSV--GKQVHALAIKSD 376

Query: 155 LNSN-LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLF 213
           +  N + V   L+ +Y++C +V  ARR+F+ + E  +VS N++I  YA+     E+L LF
Sbjct: 377 IPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLF 436

Query: 214 RELQERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEYIKKYGLDKYVKVNTALIDMHAK 272
             + ++++ P  +T ++ LS+C   G ++ G K+ +   +++ ++   +  + +ID+  +
Sbjct: 437 ELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGR 496

Query: 273 CGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
            G+L +A  + + M     +  W+ ++ A   HG    ++    E ++ +
Sbjct: 497 AGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLE 546



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 177/390 (45%), Gaps = 13/390 (3%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +FD IP+PDIV +NT+   Y+       A+ LF E+       D ++   ++ AC  
Sbjct: 94  ARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSGVIIAC-- 151

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC---VV 191
              + +   +QLHCF +  G +    V   ++  Y+    +  ARR+F  + E      V
Sbjct: 152 --GDDVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEV 209

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+NA+I A  +     EA+ LFRE+  R LK    TM S L++   +  L  G   H  +
Sbjct: 210 SWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMM 269

Query: 252 KKYGLDKYVKVNTALIDMHAKC-GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ-GHK 309
            K G      V + LID+++KC G + +   VF+ ++  D   W+ MI  ++ +      
Sbjct: 270 IKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSED 329

Query: 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGI-VPGIKHYGCM 368
            I  F EM      PD+ +F+ +  ACS+      G    +++  K  I    +     +
Sbjct: 330 GIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVG-KQVHALAIKSDIPYNRVSVNNAL 388

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428
           V +  + G + +A R  D +P +   +   ++++  + H     + ++ E + + D +  
Sbjct: 389 VAMYSKCGNVHDARRVFDTMP-EHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPN 447

Query: 429 G-DYVILSNLCARAGRWEDVDYLRKLMKDR 457
              ++ + + C   G+ E+      +MK+R
Sbjct: 448 TITFIAVLSACVHTGKVEEGQKYFNMMKER 477



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 134/258 (51%), Gaps = 10/258 (3%)

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           N++   TLIN YA+ S +  AR++F+ I +P +VSYN +I AYA       AL LF E++
Sbjct: 74  NVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVR 133

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           E        T+   + +C     + L + +H ++   G D Y  VN A++  +++ G L+
Sbjct: 134 ELRFGLDGFTLSGVIIACG--DDVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFLN 191

Query: 278 DAVSVFDNM---SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
           +A  VF  M    G+D  +W+AMIVA   H +G +++ +F EM++  +  D  T   +L 
Sbjct: 192 EARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLT 251

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC-MVDLLGR-AGRLDEAYRFIDELPIKS 392
           A +    +  G   F+ M  K G   G  H G  ++DL  + AG + E  +  +E+    
Sbjct: 252 AFTCVKDLVGGMQ-FHGMMIKSGF-HGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPD 309

Query: 393 TPILWRTLLSSCSSHNNL 410
             +LW T++S  S + +L
Sbjct: 310 L-VLWNTMISGFSQYEDL 326



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 99/207 (47%), Gaps = 17/207 (8%)

Query: 38  KQIHAVTIKTHL-QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           KQ+HA+ IK+ +  N ++V   L+   ++     ++  A  +FD +PE ++V  N+M  G
Sbjct: 366 KQVHALAIKSDIPYNRVSVNNALVAMYSK---CGNVHDARRVFDTMPEHNMVSLNSMIAG 422

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFA---IKL 153
           Y++    + ++ LF  +L   + P+  +F ++L AC   G   +EEG++         ++
Sbjct: 423 YAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTG--KVEEGQKYFNMMKERFRI 480

Query: 154 GLNSNLYVCTTLINLYAECSDVEAARRIFENIS-EPCVVSYNAIITAYARSSRPN---EA 209
              +  Y C  +I+L      ++ A RI E +   P  + +  ++ A  +        +A
Sbjct: 481 EPEAEHYSC--MIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKA 538

Query: 210 LSLFRELQERNLKPTDVTMLSALSSCA 236
            + F +L+  N  P    MLS + + A
Sbjct: 539 ANEFLQLEPYNAAP--YVMLSNMYASA 563


>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
 gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 198/517 (38%), Positives = 279/517 (53%), Gaps = 39/517 (7%)

Query: 20  NTPNALSLLPRCTSFRGLKQIH--AVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHL 77
           NT     LL +C S   LKQIH  AVT+        ++  KL+N  TQ     S   A  
Sbjct: 2   NTQTFYFLLQKCGSLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQ---LGSPVDAQK 58

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           +F+ I  PDIV +  +   Y  +  P +A  +F  L +SGL PD +     + AC     
Sbjct: 59  VFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACG--HR 116

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA--------------------------- 170
           + L  G+ +H    +  L S+  V   LI++Y+                           
Sbjct: 117 KDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLL 176

Query: 171 ----ECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ-ERNLKPTD 225
               +C+D+EAARRIF+ +     VS+ A+IT Y +   P   L LF+E++ E    PT 
Sbjct: 177 NGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTV 236

Query: 226 VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285
           +T+++ LS CA +G+ DLG  +H Y+ K  LD  V VN AL+DM+AK G L  A+ +F  
Sbjct: 237 ITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQE 296

Query: 286 MSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
           M  +D  +W+ MI   A HG+G  ++  F +M K+ V P+E+T L +L ACSH GLV EG
Sbjct: 297 MPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVVEG 356

Query: 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS 405
            + F  M   +GI P I+HYGCMVDLLGRAG L EA   I+ +PIK   ++WR+LLS+C 
Sbjct: 357 RSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACL 416

Query: 406 SHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGC 465
            H NL LA+   + I EL+    G Y++L N+   A RWED    RK M+DR V K PGC
Sbjct: 417 VHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGC 476

Query: 466 SSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           S +EVN VV EF + D VH    D+   L+ + +++K
Sbjct: 477 SWVEVNGVVHEFLAEDAVHCIRADVYTVLEAITEQMK 513


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 191/509 (37%), Positives = 282/509 (55%), Gaps = 30/509 (5%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSR-----------SKTPIRAIFLFVELL----NSGLL 119
           A  LFD+IP  D++ +NTM  GY++            ++P+R +F +  ++      G+L
Sbjct: 207 ARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGML 266

Query: 120 ----------PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLY 169
                     P        +        + ++ G++L     +     N+     +I+ Y
Sbjct: 267 DEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGREL----FEEMPFPNIGSWNIMISGY 322

Query: 170 AECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTML 229
            +  D+  AR +F+ + +   VS+ AII  YA++    EA+++  E++         T  
Sbjct: 323 CQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFC 382

Query: 230 SALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK 289
            ALS+CA + +L+LGK +H  + + G +K   V  AL+ M+ KCG +D+A  VF  +  K
Sbjct: 383 CALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHK 442

Query: 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYF 349
           D  +W+ M+  YA HG G +++ +FE M+ A V PDEIT +G+L ACSHTGL D G  YF
Sbjct: 443 DIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYF 502

Query: 350 YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
           +SM   YGI P  KHY CM+DLLGRAG L+EA   I  +P +     W  LL +   H N
Sbjct: 503 HSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGN 562

Query: 410 LGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIE 469
           + L +Q  E +F+++  + G YV+LSNL A +GRW DV  +R  M+  GV K PG S +E
Sbjct: 563 MELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVE 622

Query: 470 VNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRY 529
           V N +  F  GD  H     +   L+EL  ++K  GYV  T LV H D+E+EEK+  L+Y
Sbjct: 623 VQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYVSSTKLVLH-DVEEEEKKHMLKY 681

Query: 530 HSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           HSEKLA+ FG+L  P G  IRV+KNLRVC
Sbjct: 682 HSEKLAVAFGILTMPSGKPIRVMKNLRVC 710



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 121/236 (51%), Gaps = 4/236 (1%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           +  A  LFD +P+ D V +  +  GY+++     A+ + VE+   G   +  +F   L A
Sbjct: 328 LAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSA 387

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           CA + A  LE GKQ+H   ++ G      V   L+ +Y +C  ++ A  +F+ +    +V
Sbjct: 388 CADIAA--LELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIV 445

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG-KWIHEY 250
           S+N ++  YAR     +AL++F  +    +KP ++TM+  LS+C+  G  D G ++ H  
Sbjct: 446 SWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSM 505

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHG 305
            K YG+    K    +ID+  + G L++A ++  NM  + D   W A++ A   HG
Sbjct: 506 NKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHG 561



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 164/374 (43%), Gaps = 45/374 (12%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRS---------------KTPIRAIFLFVELLNSGLL 119
           A +LFD +PE D+V +N M  GY RS               K  I    L    + SG L
Sbjct: 114 ARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRL 173

Query: 120 PDDYS-FPSL----LKACAC-----VGAEALEEGKQLH-CFAIKLGLNSNLYVCTTLINL 168
            +    F S     L +C C     V    L + +QL     ++     +L    T+I+ 
Sbjct: 174 EEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVR-----DLISWNTMISG 228

Query: 169 YAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTM 228
           YA+  D+  ARR+FE      V ++ A++ AY +    +EA  +F E+ ++     +V  
Sbjct: 229 YAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVM- 287

Query: 229 LSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG 288
              ++  A    +D+G+ + E +    +  +      +I  + + G L  A ++FD M  
Sbjct: 288 ---IAGYAQYKRMDMGRELFEEMPFPNIGSW----NIMISGYCQNGDLAQARNLFDMMPQ 340

Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNY 348
           +D+ +W+A+I  YA +G   +++ M  EM +   S +  TF   L AC+    ++ G   
Sbjct: 341 RDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELG-KQ 399

Query: 349 FYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408
            +    + G   G      +V +  + G +DEAY     +  K   + W T+L+  + H 
Sbjct: 400 VHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDI-VSWNTMLAGYARH- 457

Query: 409 NLGLAKQVIERIFE 422
             G  +Q +  +FE
Sbjct: 458 --GFGRQALT-VFE 468



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 123/271 (45%), Gaps = 22/271 (8%)

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
           + +L+    ++  YA    +  AR +F+++ E  VVS+NA+++ Y RS   +EA  +F  
Sbjct: 92  HKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDR 151

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
           +  +N     ++    L++    G L+  + + E    + L   +  N  L+  + K   
Sbjct: 152 MPHKN----SISWNGLLAAYVRSGRLEEARRLFESKSDWEL---ISCN-CLMGGYVKRNM 203

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP--DEITFLGLL 333
           L DA  +FD +  +D  +W+ MI  YA  G   ++  +FEE      SP  D  T+  ++
Sbjct: 204 LGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEE------SPVRDVFTWTAMV 257

Query: 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
           YA    G++DE    F  M  K  +      Y  M+    +  R+D      +E+P  + 
Sbjct: 258 YAYVQDGMLDEARRVFDEMPQKREM-----SYNVMIAGYAQYKRMDMGRELFEEMPFPNI 312

Query: 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
              W  ++S    + +L  A+ + + + + D
Sbjct: 313 GS-WNIMISGYCQNGDLAQARNLFDMMPQRD 342



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 109/257 (42%), Gaps = 49/257 (19%)

Query: 162 CTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNL 221
           CT  I+ +      + A  +F+ +     VSYNA+I+ Y R+++ + A  LF ++  +  
Sbjct: 36  CTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHK-- 93

Query: 222 KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVS 281
                               DL  W                   ++  +A+  RL DA  
Sbjct: 94  --------------------DLFSW-----------------NLMLTGYARNRRLRDARM 116

Query: 282 VFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341
           +FD+M  KD  +W+AM+  Y   G   ++  +F+ M       + I++ GLL A   +G 
Sbjct: 117 LFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRM----PHKNSISWNGLLAAYVRSGR 172

Query: 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
           ++E    F S  D   I        C++    +   L +A +  D++P++   I W T++
Sbjct: 173 LEEARRLFESKSDWELISC-----NCLMGGYVKRNMLGDARQLFDQIPVRDL-ISWNTMI 226

Query: 402 SSCSSHNNLGLAKQVIE 418
           S  +   +L  A+++ E
Sbjct: 227 SGYAQDGDLSQARRLFE 243



 Score = 42.4 bits (98), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 10/169 (5%)

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
           Y K +  D +    T  I  H + G  D A+ VFD M  +++ +++AMI  Y  + +   
Sbjct: 23  YPKPHFEDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSL 82

Query: 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369
           +  +F++M       D  ++  +L   +    + +    F SM +K      +  +  M+
Sbjct: 83  ARDLFDKM----PHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEK-----DVVSWNAML 133

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
               R+G +DEA    D +P K++ I W  LL++      L  A+++ E
Sbjct: 134 SGYVRSGHVDEARDVFDRMPHKNS-ISWNGLLAAYVRSGRLEEARRLFE 181


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 189/534 (35%), Positives = 306/534 (57%), Gaps = 10/534 (1%)

Query: 28  LPRCTSFRGLKQIHAVTIKTHLQN---DLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           L  C     L    AV ++        D+ V + L++  ++     +M  A  +FD +P 
Sbjct: 118 LTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSR---CGAMGDAIRVFDGMPR 174

Query: 85  PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144
            D V ++TM  G+  +  P+ A+ ++  +   G+  D+     +++AC   G   +  G 
Sbjct: 175 KDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRM--GA 232

Query: 145 QLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
            +H   ++ G+  ++ + T+L+++YA+    + AR++F  +     VS+NA+I+ +A++ 
Sbjct: 233 SVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNG 292

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
             +EAL LFRE+    L+P    ++SAL +CA +G L LGK IH +I +  L+    + T
Sbjct: 293 HADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILRR-LEFQCILGT 351

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
           A++DM++KCG L+ A  +F+ +S +D   W+AMI    THG GH ++ +F+E+ +  + P
Sbjct: 352 AVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGIKP 411

Query: 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF 384
           D  TF  LL A SH+GLV+EG  +F  M  ++GI P  KH  C+VDLL R+G ++EA   
Sbjct: 412 DHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEM 471

Query: 385 IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444
           +  +  + T  +W  LLS C ++  L L + + ++I E      G   ++SNL A A +W
Sbjct: 472 LASMHTEPTIPIWVALLSGCLNNKKLELGETIAKKILESQPEDIGVLALVSNLYAAAKKW 531

Query: 445 EDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMV 504
           + V  +RKLMKD G  KVPG S IEV+     F   D  H    ++ K + +L  E++ +
Sbjct: 532 DKVREIRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILKMISKLSFEMRKM 591

Query: 505 GYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           GYVP T  V+H D++++ KE  L YHSE+LAI FGLLNT PGT + ++KNLRVC
Sbjct: 592 GYVPRTEFVYH-DLDEDVKEQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVC 644



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 166/324 (51%), Gaps = 10/324 (3%)

Query: 87  IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQL 146
           I  +N +    SR+ +P  A+ +F   L S   PD  +F   L ACA +G     E  ++
Sbjct: 77  IPAWNALLAARSRAGSPGAALRVF-RALPSSARPDSTTFTLALTACARLGDLDAAEAVRV 135

Query: 147 HCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRP 206
             FA   G   +++VC+ L+++Y+ C  +  A R+F+ +     V+++ ++  +  + RP
Sbjct: 136 RAFAA--GYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRP 193

Query: 207 NEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
            EAL ++  ++E  +   +V M+  + +C L G+  +G  +H    ++G+   V + T+L
Sbjct: 194 VEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSL 253

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           +DM+AK G  D A  VF  M  ++  +W+A+I  +A +G   +++ +F EM  + + PD 
Sbjct: 254 VDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDS 313

Query: 327 ITFLGLLYACSHTGLVDEGWNY--FYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF 384
              +  L AC+  G +  G +   F   R ++  + G      ++D+  + G L+ A + 
Sbjct: 314 GALVSALLACADVGFLKLGKSIHGFILRRLEFQCILGT----AVLDMYSKCGSLESARKL 369

Query: 385 IDELPIKSTPILWRTLLSSCSSHN 408
            ++L  +   +LW  +++ C +H 
Sbjct: 370 FNKLSSRDL-VLWNAMIACCGTHG 392



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 138/273 (50%), Gaps = 10/273 (3%)

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENI--SEPCVVSYNAIITAYARSSRPNEALSLF 213
           + NL+   +L   YA    ++AA         S  C+ ++NA++ A +R+  P  AL +F
Sbjct: 43  SQNLF--PSLAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAARSRAGSPGAALRVF 100

Query: 214 RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273
           R L   + +P   T   AL++CA LG LD  + +       G  + V V +AL+ ++++C
Sbjct: 101 RALPS-SARPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRC 159

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
           G + DA+ VFD M  KD  AWS M+  + + G+  +++ M+  M +  V+ DE+  +G++
Sbjct: 160 GAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVI 219

Query: 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
            AC+ TG    G +  +    ++G+   +     +VD+  + G  D A +    +P ++ 
Sbjct: 220 QACTLTGNTRMGAS-VHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNA 278

Query: 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
            + W  L+S  + +   G A + ++   E+  S
Sbjct: 279 -VSWNALISGFAQN---GHADEALDLFREMSTS 307


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 183/521 (35%), Positives = 295/521 (56%), Gaps = 52/521 (9%)

Query: 69  TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSL 128
           ++ ++ A  LFD++ E  +V + TM  GY +      ++ LF ++    ++PD+ +  ++
Sbjct: 315 SNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTV 374

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN---- 184
           L AC  V  E  + G+ +H F +  G+  + ++   L++LYA+C  ++ A R FE     
Sbjct: 375 LSAC--VHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCK 432

Query: 185 ---------------------------ISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
                                      I E  +VS+N ++ AY +    NE+  +F ++Q
Sbjct: 433 SAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQ 492

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
             N+KP   T++S LSSCA +G+L+ G W++ YI+K  +     + TALIDM+ KCG ++
Sbjct: 493 SSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVE 552

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            A  +F  +  K+   W+AM+ AYA  GQ  ++I ++ EM +  V PD +TF+ LL ACS
Sbjct: 553 MAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACS 612

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H GLVDEG+ YF  +R  Y I+P I HYGCMVDLLGR G L+E  +FI+ +PI+    +W
Sbjct: 613 HGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIW 672

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
            +L+ +C SH+N+ LA+Q  +++ E+D ++ G +V+LSN+ A AGRW+DV  +R  + + 
Sbjct: 673 SSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHET 732

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           GV K PG + IE N VV EF + + V   S D+   L ++ + L +   + DT+      
Sbjct: 733 GVPKQPGFTMIEQNGVVHEFVASNLV---SADILCMLQDIERRLLVKQELSDTT------ 783

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
                       HSE+LA+ FGL+N    + IRVV ++R+C
Sbjct: 784 ----------SQHSERLAVAFGLINNQENSPIRVVNSVRMC 814



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 122/471 (25%), Positives = 220/471 (46%), Gaps = 54/471 (11%)

Query: 1   MATTPSPPI---TQSP----PPKLCTNTPNA-------LSLLPRCTSFRGLKQIHAVTIK 46
           MAT   P I   + SP    PP L   T ++       + LL  C++ R    IHA  I 
Sbjct: 1   MATLTLPNIFFSSLSPSIHKPPTLNPKTSHSVLRPHWIIDLLKSCSNIREFSPIHAHLIT 60

Query: 47  THLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRA 106
            +L +D  + ++++ F     + ++++ AH +     EP+ +++NT+     +   P   
Sbjct: 61  ANLIHDPEITSQVLAFLL---SVNNLDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEV 117

Query: 107 IFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI 166
           +  +  ++  G+L D  +F  L+ AC C   + ++ G ++H   +K G   N  +   L+
Sbjct: 118 LECYYHMVTQGVLLDISTFHFLIHAC-CKNFD-VKLGSEVHGRILKCGFGRNKSLNNNLM 175

Query: 167 NLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV 226
            LY++C  ++   ++FE ++   V+S+N +I+ Y       EAL LF E+    + P ++
Sbjct: 176 GLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEI 235

Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD-------- 278
           TM+S +S+CA L  L++GK +H YI    L     +   L+DM++KCG++D+        
Sbjct: 236 TMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRC 295

Query: 279 -------------------------AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
                                    A  +FD M+ +   +W+ M+  Y   G   +S+ +
Sbjct: 296 DESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLEL 355

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           F++M    V PDE+  + +L AC H    D G    ++    YG++        ++DL  
Sbjct: 356 FQQMRFENVIPDEVALVTVLSACVHLEDFDLG-RSVHAFIVTYGMLVDGFLGNALLDLYA 414

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
           + G+LDEA R  ++LP KS    W ++L        +  A+    +I E D
Sbjct: 415 KCGKLDEALRTFEQLPCKSAAS-WNSMLDGFCRSGGVDKARDFFNKIPEKD 464



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 204/413 (49%), Gaps = 73/413 (17%)

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           LF+++   D++ +NTM   Y        A+ LF E+L SG+LPD+ +  SL+  CA    
Sbjct: 190 LFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCA--KL 247

Query: 138 EALEEGKQLHCFAI--KLGLNSNLYVC-------------------------------TT 164
           + LE GK+LH + +  KL +  +L  C                               TT
Sbjct: 248 KDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTT 307

Query: 165 LINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT 224
           L++ Y + + ++ AR++F+ ++E  +VS+  +++ Y +     E+L LF++++  N+ P 
Sbjct: 308 LVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPD 367

Query: 225 DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFD 284
           +V +++ LS+C  L   DLG+ +H +I  YG+     +  AL+D++AKCG+LD+A+  F+
Sbjct: 368 EVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFE 427

Query: 285 NM-----------------SG--------------KDTQAWSAMIVAYATHGQGHKSILM 313
            +                 SG              KD  +W+ M+ AY  H   ++S  +
Sbjct: 428 QLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEI 487

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLL 372
           F +M  + V PD+ T + LL +C+  G ++ G W   Y  +++ GI   +     ++D+ 
Sbjct: 488 FCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLG--TALIDMY 545

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
           G+ G ++ AY    ++ I+    +W  ++++ +     G A + I+   E+++
Sbjct: 546 GKCGCVEMAYEIFTQI-IEKNVFVWTAMMAAYAME---GQALEAIDLYLEMEE 594


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 201/576 (34%), Positives = 314/576 (54%), Gaps = 47/576 (8%)

Query: 22  PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFD 80
           P+ ++       F   K IH   +     +DL +   LI+ +C  N     ++ A  +F+
Sbjct: 119 PSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFN----DLDKARKVFE 174

Query: 81  RIPEPDIVLFNTMARGYSRS-------KTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
            +P  D+V +N++  GY+ +       +   ++I LF+E++N    PD  +  S+L+AC 
Sbjct: 175 EMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQ-FKPDLLTITSILQACG 233

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
            +G   LE GK +H + I  G   +      LIN+YA+C ++ A++ +F  +     VS+
Sbjct: 234 HLGD--LEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSW 291

Query: 194 NAIITAYARSSRPNEALSLFRELQERNL-------------------------------K 222
           N++I  Y ++ +  ++L +F  ++ R++                                
Sbjct: 292 NSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVT 351

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
           P   TMLS L  C+LL +   GK IH  I K GL+  V V   LI+M++KCG L ++  V
Sbjct: 352 PDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQV 411

Query: 283 FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342
           F  M  KD   W+A+I A   +G+G K++  F EM  A + PD + F+ +++ACSH+GLV
Sbjct: 412 FKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLV 471

Query: 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
           +EG NYF+ M+  Y I P I+HY C+VDLL R+  LD+A  FI  +P+K    +W  LLS
Sbjct: 472 EEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLS 531

Query: 403 SCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKV 462
           +C    +  +A++V ERI EL+    G YV++SN+ A  G+W+ V  +RK +K RG+ K 
Sbjct: 532 ACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKD 591

Query: 463 PGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEE 522
           PGCS +E+ N V  F +G        ++ K L  L   +   GY+ +   V H   EDE+
Sbjct: 592 PGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEK 651

Query: 523 KEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           ++I L  HSE+LAI FGLLNT PGT ++V+KNLRVC
Sbjct: 652 RDI-LCGHSERLAIAFGLLNTKPGTPLQVMKNLRVC 686



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 126/469 (26%), Positives = 224/469 (47%), Gaps = 65/469 (13%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLI-NFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMAR 95
           L ++H++ I   L + +    KLI  +      TSS     L     P  ++ L+N++ R
Sbjct: 32  LHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRL---ASPSNNVYLWNSIIR 88

Query: 96  GYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155
             + +     A+ L+ E     L PD Y+FPS++ ACA  G    E  K +H   + +G 
Sbjct: 89  ALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACA--GLLDFEMAKSIHDRVLDMGF 146

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEAL----- 210
            S+LY+   LI++Y   +D++ AR++FE +    VVS+N++I+ Y  +   NEAL     
Sbjct: 147 GSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQ 206

Query: 211 --SLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALID 268
              LF E+  +  KP  +T+ S L +C  LG L+ GK++H+Y+   G +     +  LI+
Sbjct: 207 SIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILIN 265

Query: 269 MHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT 328
           M+AKCG L  +  VF  M  KD+ +W++MI  Y  +G+   S+ +FE  MKA+   D IT
Sbjct: 266 MYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFEN-MKAR---DIIT 321

Query: 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP--------------------GIKHYGC- 367
           +  ++ +C H+   + G      MR + G+ P                    G + +GC 
Sbjct: 322 WNTIIASCVHSEDCNLGLRMISRMRTE-GVTPDMATMLSILPVCSLLAAKRQGKEIHGCI 380

Query: 368 --------------MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413
                         ++++  + G L  +++    +  K   + W  L+S+C  +   G  
Sbjct: 381 FKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDV-VTWTALISACGMY---GEG 436

Query: 414 KQVIERIFELDDS-----HGGDYVILSNLCARAGRWED-VDYLRKLMKD 456
           K+ +    E++ +     H   +V +   C+ +G  E+ ++Y  ++ KD
Sbjct: 437 KKAVRAFGEMEAAGIVPDHVA-FVAIIFACSHSGLVEEGLNYFHRMKKD 484



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 156/335 (46%), Gaps = 44/335 (13%)

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
           F S+ +A A   A    +  +LH   I LGL+ ++     LI  YA   D  ++  +F  
Sbjct: 16  FSSISRALA--SAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFR- 72

Query: 185 ISEPC--VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242
           ++ P   V  +N+II A   +   +EALSL+ E Q   L+P   T  S +++CA L   +
Sbjct: 73  LASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFE 132

Query: 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYA 302
           + K IH+ +   G    + +  ALIDM+ +   LD A  VF+ M  +D  +W+++I  Y 
Sbjct: 133 MAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYN 192

Query: 303 THGQG-------HKSILMFEEMMKAQVSPDEITFLGLLYACSHTG-----------LVDE 344
            +G         ++SI +F EM+  Q  PD +T   +L AC H G           ++  
Sbjct: 193 ANGYWNEALEIYYQSIKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITS 251

Query: 345 GW-------NYFYSMRDKYG-------IVPGIK-----HYGCMVDLLGRAGRLDEAYRFI 385
           G+       N   +M  K G       +  G+K      +  M+++  + G++ ++ +  
Sbjct: 252 GYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVF 311

Query: 386 DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
           + +  +   I W T+++SC    +  L  ++I R+
Sbjct: 312 ENMKARDI-ITWNTIIASCVHSEDCNLGLRMISRM 345


>gi|326532850|dbj|BAJ89270.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 194/483 (40%), Positives = 293/483 (60%), Gaps = 23/483 (4%)

Query: 90  FNTMARGYSRSKTPIRAIFLFVELLNSGLLP-----DDYSFPSLLKACA-CVGAEALEEG 143
           FN   RG + S  P R++ L    L     P     D  S    LKA A C    A    
Sbjct: 67  FNAALRGLAASPHPARSLLLLAGRLLPSPSPPRPRLDALSLSFALKASARCSDGPAT--- 123

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
            QLH   ++LG  +++ + TTL++ YA+C ++ +AR++F+ ++   V S+NA++   A+ 
Sbjct: 124 LQLHALVLRLGCTADVRLITTLLDSYAKCDELASARKVFDEMTVRDVASWNALLAGLAQG 183

Query: 204 SRPNEALSLF----RELQERNLK--PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
           + P+ AL+LF    R  QE   +  P  VT+++ALS+CA +GSL  G  +HE+ +K G+ 
Sbjct: 184 TEPSLALALFHRLVRSFQELPPREAPNVVTIIAALSACAQIGSLQDGLCVHEFARKIGVG 243

Query: 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ--AWSAMIVAYATHGQGHKSILMFE 315
             V+V  ALIDM++KCG L  A+ VF ++  +D    +++  I A + HG G  ++ +F+
Sbjct: 244 GNVRVCNALIDMYSKCGSLARALEVFHSIKREDRTLVSYNTAIQAISMHGHGGDALKLFD 303

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
           EM    + PDE+T++ +L  C+H GLVDEG   F+ MR    + P +KHYG +VDLLGRA
Sbjct: 304 EMPTC-IEPDEVTYIAVLCGCNHAGLVDEGLRVFHGMR----VPPNVKHYGTVVDLLGRA 358

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
           GRL EAY  I  +P  +  +LW+TLL +  +H ++ LA+    ++ EL  +  GDYV+LS
Sbjct: 359 GRLAEAYDTIKSMPFPADIVLWQTLLGASKTHGDVELAEVAATKLTELGSNVDGDYVLLS 418

Query: 436 NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
           N+ A   RW DV  +R  M+   V KVPG S  E++ V+ +F +GD  H    ++ +AL 
Sbjct: 419 NVYASKARWADVGRVRDTMRSNDVRKVPGFSYTEISGVMHKFINGDKEHPRLQEIYRALG 478

Query: 496 ELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNL 555
           E++  +  +GY P+TS V H D+ +EEK+ AL YHSEKLAI FGL+ TPPG T+RV+KN+
Sbjct: 479 EIMSRIGELGYEPETSNVLH-DIGEEEKQYALSYHSEKLAIAFGLIATPPGETLRVIKNI 537

Query: 556 RVC 558
           R+C
Sbjct: 538 RIC 540



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 152/317 (47%), Gaps = 28/317 (8%)

Query: 24  ALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           AL    RC+      Q+HA+ ++     D+ ++T L++   +    +S   A  +FD + 
Sbjct: 110 ALKASARCSDGPATLQLHALVLRLGCTADVRLITTLLDSYAKCDELAS---ARKVFDEMT 166

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL------LPDDYSFPSLLKACACVGA 137
             D+  +N +  G ++   P  A+ LF  L+ S         P+  +  + L ACA +G 
Sbjct: 167 VRDVASWNALLAGLAQGTEPSLALALFHRLVRSFQELPPREAPNVVTIIAALSACAQIG- 225

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI--SEPCVVSYNA 195
            +L++G  +H FA K+G+  N+ VC  LI++Y++C  +  A  +F +I   +  +VSYN 
Sbjct: 226 -SLQDGLCVHEFARKIGVGGNVRVCNALIDMYSKCGSLARALEVFHSIKREDRTLVSYNT 284

Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
            I A +      +AL LF E+    ++P +VT ++ L  C   G +D G  +   ++   
Sbjct: 285 AIQAISMHGHGGDALKLFDEMPT-CIEPDEVTYIAVLCGCNHAGLVDEGLRVFHGMR--- 340

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQGHKSILMF 314
           +   VK    ++D+  + GRL +A     +M    D   W  ++ A  THG         
Sbjct: 341 VPPNVKHYGTVVDLLGRAGRLAEAYDTIKSMPFPADIVLWQTLLGASKTHG--------- 391

Query: 315 EEMMKAQVSPDEITFLG 331
            ++  A+V+  ++T LG
Sbjct: 392 -DVELAEVAATKLTELG 407


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 189/551 (34%), Positives = 304/551 (55%), Gaps = 15/551 (2%)

Query: 16  KLCTNTPNAL---SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTT 69
           ++C   P      S +  C S   +   KQ+H + +K  + ++L V + L +  ++    
Sbjct: 98  RICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSK---C 154

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
            +M  A  +F+ +P  D V +  M  GYS+      A+  F ++++  +  D +   S L
Sbjct: 155 GAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTL 214

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC 189
            AC  +  +A + G+ +H   +KLG  S+++V   L ++Y++  D+E+A  +F  I   C
Sbjct: 215 GACGAL--KACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVF-GIDSEC 271

Query: 190 --VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
             VVSY  +I  Y  + +  + LS+F EL+ + ++P + T  S + +CA   +L+ G  +
Sbjct: 272 RNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQL 331

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQG 307
           H  + K   D+   V++ L+DM+ KCG L+ A+  FD +      AW++++  +  HG G
Sbjct: 332 HAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLG 391

Query: 308 HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367
             +I  FE M+   V P+ ITF+ LL  CSH GLV+EG +YFYSM   YG+VPG +HY C
Sbjct: 392 KDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSC 451

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
           ++DLLGRAGRL EA  FI+ +P +     W + L +C  H +  + K   E++ +L+  +
Sbjct: 452 VIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKN 511

Query: 428 GGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYS 487
            G  V+LSN+ A   +WEDV  +R  M+D  V K+PG S ++V      F + D  H   
Sbjct: 512 SGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHXRK 571

Query: 488 TDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGT 547
           + + + LD L+ ++K  GYVP T  V   DM+D  KE  L  HSE++A+ F L++ P G 
Sbjct: 572 SAIYEKLDXLLDQIKAAGYVPXTDSVPL-DMDDXMKEKLLHRHSERIAVAFALISMPIGK 630

Query: 548 TIRVVKNLRVC 558
            I V KNLRVC
Sbjct: 631 PIIVKKNLRVC 641



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 124/440 (28%), Positives = 223/440 (50%), Gaps = 24/440 (5%)

Query: 34  FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM 93
            R  KQ+HA+ I         +   L+N  ++      ++HA  LFD +P+ ++V +  M
Sbjct: 21  LRRGKQLHALLICAGYTPCTFLTNHLVNMYSK---CGELDHALKLFDTMPQRNLVSWTAM 77

Query: 94  ARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL 153
             G S++     AI  F  +   G +P  ++F S ++ACA +G  ++E GKQ+HC A+K 
Sbjct: 78  ISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLG--SIEMGKQMHCLALKF 135

Query: 154 GLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV--VSYNAIITAYARSSRPNEALS 211
           G+ S L+V + L ++Y++C  +  A ++FE +  PC   VS+ A+I  Y++     EAL 
Sbjct: 136 GIGSELFVGSNLEDMYSKCGAMFDACKVFEEM--PCKDEVSWTAMIDGYSKIGEFEEALL 193

Query: 212 LFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271
            F+++ +  +      + S L +C  L +   G+ +H  + K G +  + V  AL DM++
Sbjct: 194 AFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYS 253

Query: 272 KCGRLDDAVSVFD-NMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           K G ++ A +VF  +   ++  +++ +I  Y    Q  K + +F E+ +  + P+E TF 
Sbjct: 254 KAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFS 313

Query: 331 GLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389
            L+ AC++   +++G   +   M+  +   P +     +VD+ G+ G L+ A +  DE+ 
Sbjct: 314 SLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSI--LVDMYGKCGLLEHAIQAFDEIG 371

Query: 390 IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS----HGGDYVILSNLCARAGRWE 445
              T I W +L+S    H   GL K  I+    + D     +   ++ L   C+ AG  E
Sbjct: 372 -DPTEIAWNSLVSVFGQH---GLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVE 427

Query: 446 D-VDYLRKLMKDRGVLKVPG 464
           + +DY   + K  GV  VPG
Sbjct: 428 EGLDYFYSMDKTYGV--VPG 445


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 183/526 (34%), Positives = 297/526 (56%), Gaps = 7/526 (1%)

Query: 33  SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNT 92
           S RG+K++    I + L  D  +  +++     +     M  A  LFD +PE +I+ +NT
Sbjct: 146 SIRGVKKVFNYMINSGLDPDEYLRNRVL---LMHVKCGMMIDARRLFDEMPEKNILSWNT 202

Query: 93  MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
           +  G   +     A  LF+ +           F ++++A A +G   +  G+QLH  ++K
Sbjct: 203 IIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLGL--IFAGRQLHSCSLK 260

Query: 153 LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL 212
            G+  +++V   LI++Y++C  +E A+ +F+ + E   V +N+II  YA      EALS+
Sbjct: 261 TGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSM 320

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           + E+++  +K  + T    +  CA L SL+  K  H  + ++G    +  NTAL+D+++K
Sbjct: 321 YYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSK 380

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
            GR++DA  VFD M  K+  +W+A+I  Y  HG+G +++ MFE M+   + P+ +TFL +
Sbjct: 381 WGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAV 440

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L ACS++GL D GW  F SM   + I P   HY CM++LLGR G LDEA+  I + P K 
Sbjct: 441 LSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKP 500

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452
           T  +W  LL++C  H N  L K   E+++ +      +YV+L N+  R+GR E+   + +
Sbjct: 501 TVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNRSGRLEEAAAVIQ 560

Query: 453 LMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSL 512
            +K RG+  +P CS IE+      F SGD  H+ S ++ + LDEL+ E+   GYVP    
Sbjct: 561 TLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKLDELMLEISKHGYVPQDKF 620

Query: 513 VHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +      DE++E  L YHSEKLAI FGL+NT   T +++V++ R+C
Sbjct: 621 LLPD--VDEQEERVLLYHSEKLAIAFGLINTSDWTPLQIVQSHRIC 664



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 154/319 (48%), Gaps = 26/319 (8%)

Query: 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
           LN     D  ++ +L+ AC  +G +++   K++  + I  GL+ + Y+   ++ ++ +C 
Sbjct: 123 LNGAYDMDSETYDALVSAC--IGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCG 180

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
            +  ARR+F+ + E  ++S+N II     +    EA  LF  + +          ++ + 
Sbjct: 181 MMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIR 240

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
           + A LG +  G+ +H    K G+   V V  ALIDM++KCG ++DA  VFD M  K T  
Sbjct: 241 ASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVG 300

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC-----------SHTGLV 342
           W+++I  YA HG   +++ M+ EM  + V  D  TF  ++  C           +H GLV
Sbjct: 301 WNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLV 360

Query: 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
                       ++G    I     +VDL  + GR+++A    D +P K+  I W  L++
Sbjct: 361 ------------RHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNV-ISWNALIA 407

Query: 403 SCSSHNNLGLAKQVIERIF 421
              +H     A ++ ER+ 
Sbjct: 408 GYGNHGRGVEAVEMFERML 426



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 113/246 (45%), Gaps = 10/246 (4%)

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSAL-SSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
           R +EAL LF  L+       D     AL S+C  L S+   K +  Y+   GLD    + 
Sbjct: 110 RYHEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLR 169

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
             ++ MH KCG + DA  +FD M  K+  +W+ +I      G   ++  +F  M +    
Sbjct: 170 NRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSD 229

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
                F+ ++ A +  GL+  G    +S   K G+   +     ++D+  + G +++A  
Sbjct: 230 AGSRMFVTMIRASAGLGLIFAG-RQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQC 288

Query: 384 FIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS----HGGDYVILSNLCA 439
             D++P K+T + W ++++  + H   G +++ +   +E+ DS        + I+  +CA
Sbjct: 289 VFDQMPEKTT-VGWNSIIAGYALH---GYSEEALSMYYEMRDSGVKIDNFTFSIIIRICA 344

Query: 440 RAGRWE 445
           R    E
Sbjct: 345 RLASLE 350


>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
          Length = 1033

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 195/541 (36%), Positives = 299/541 (55%), Gaps = 48/541 (8%)

Query: 20  NTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLF 79
           + P+ L    +  +F   +Q+H   +KTHL  D  V   ++           +E A  +F
Sbjct: 111 SIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYID---FGEIELARRVF 167

Query: 80  DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEA 139
           DR+P  D+V +N+M  GY ++     A  LF E+      P+                  
Sbjct: 168 DRMPNRDVVSWNSMIAGYLKAGEIELASELFDEM------PE------------------ 203

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
                             +L  C  +I+ Y +C   E A ++FE +S+  VV++ ++I+A
Sbjct: 204 -----------------RDLVSCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISA 246

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
           Y ++  P +AL LFRE+    L+P    ++S LS+ A LG ++ GKW+H Y+    ++  
Sbjct: 247 YVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELS 306

Query: 260 VK-VNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHGQGHKSILMFEEM 317
              + +ALIDM++KCG +++A  VF ++S + +   W++MI   A HG   +++ +F EM
Sbjct: 307 SGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEM 366

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
            +  + P+EITFLGLL  CSH GLV+EG  YF SM +KY IVP I+HYGCM+DL GRAGR
Sbjct: 367 ERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGR 426

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437
           L++A   I  +P ++  + W+ +LS+   H ++ + K    R  EL       YV+LSN+
Sbjct: 427 LEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNI 486

Query: 438 CARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGV-HSYSTDLQKALDE 496
            A+AGRW+DV  +R +M+ RGV K+ GCSS+ VB  V EF  G  +  SYS  +   + E
Sbjct: 487 YAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVBGKVHEFLXGKELDSSYSGQVLAKIAE 546

Query: 497 LVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLR 556
           +V  LK+ GY PD + V   D+EDE KE  L  HSEK+A  FGL++      I +VKNLR
Sbjct: 547 VVSRLKLQGYEPDLTQVLL-DIEDEGKESLLNLHSEKMAXAFGLIHINKSAPIHIVKNLR 605

Query: 557 V 557
           +
Sbjct: 606 I 606



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 207/411 (50%), Gaps = 54/411 (13%)

Query: 20  NTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLF 79
           +T   +S+L +C S   L+QIHA  IKT+L N    +++LI FC+ +  +  +++A  +F
Sbjct: 5   STNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVF 64

Query: 80  DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL-----NSGLLPDDYSFPSLLKACAC 134
            RI  P+  +F  + +G+S +  P+ ++ L+  +L     +SG+   ++S PS+LKAC  
Sbjct: 65  SRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGV---EFSIPSVLKACGK 121

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           +   A +EG+Q+H   +K  L  + +V  +++ +Y +  ++E ARR+F+ +    VVS+N
Sbjct: 122 L--LAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWN 179

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           ++I  Y ++     A  LF E+ ER+           L SC                   
Sbjct: 180 SMIAGYLKAGEIELASELFDEMPERD-----------LVSC------------------- 209

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
                     A+ID + KCGR + A  VF+ MS KD   W++MI AY  +    K++ +F
Sbjct: 210 ---------NAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLF 260

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
            EM+   + PD    + +L A +  G V+EG W + Y   +K  +  G      ++D+  
Sbjct: 261 REMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIG-SALIDMYS 319

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
           + G ++ AY     +  +     W +++S  + H   GLA++ ++   E++
Sbjct: 320 KCGYIENAYHVFRSISHRRNIGDWNSMISGLAIH---GLAREALDIFVEME 367


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 204/547 (37%), Positives = 313/547 (57%), Gaps = 16/547 (2%)

Query: 22  PNA---LSLLPRCTSFRGLKQ---IHAVTIKTHL-QNDLNVL--TKLINFCTQNPTTSSM 72
           PNA   +SLLP       L Q   +HA  ++ +L QN+  VL  T L++   +      +
Sbjct: 199 PNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAK---CKHL 255

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL-LPDDYSFPSLLKA 131
            +A  +F  +   + V ++ +  G+        A  LF ++L  G+      S  S L+ 
Sbjct: 256 VYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRV 315

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           CA +    L  G QLH    K G++++L    +L+++YA+   +  A  +F+ I+    +
Sbjct: 316 CASLAD--LRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTI 373

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           SY A+++ Y ++ +  EA  +F+++Q  N++P   TM+S + +C+ L +L  G+  H  +
Sbjct: 374 SYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSV 433

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
              GL     +  +LIDM+AKCGR+D +  VFD M  +D  +W+ MI  Y  HG G ++ 
Sbjct: 434 IIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEAT 493

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            +F  M      PD++TF+ L+ ACSH+GLV EG ++F +M  KYGI+P ++HY CMVDL
Sbjct: 494 TLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDL 553

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
           L R G LDEAY+FI  +P+K+   +W  LL +C  H N+ L KQV   I +L     G++
Sbjct: 554 LARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNF 613

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           V+LSN+ + AGR+++   +R + K +G  K PGCS IE+N  +  F  GD  H  S D+ 
Sbjct: 614 VLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPDIY 673

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
             LD ++ ++K +GY  DTS V   D+E+EEKE AL YHSEKLAI FG+L+     TI V
Sbjct: 674 HELDNILIDIKKLGYQADTSFVLQ-DLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFV 732

Query: 552 VKNLRVC 558
            KNLRVC
Sbjct: 733 TKNLRVC 739



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 174/344 (50%), Gaps = 9/344 (2%)

Query: 65  QNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYS 124
           Q+     +  A  +FDRIP PD   +N + R YS       AI L+  +L   + P+ Y+
Sbjct: 42  QHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYT 101

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
           FP +LKAC+ +    L  G+ +H  A  +GL+++L+V T LI+LY  C+    A  +F  
Sbjct: 102 FPFVLKACSALAD--LCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAK 159

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQER-NLKPTDVTMLSALSSCALLGSLDL 243
           +    VV++NA++  YA     + A++   ++Q+R  L+P   T++S L   A  G+L  
Sbjct: 160 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQ 219

Query: 244 GKWIHEYIKKYGLDK---YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVA 300
           G  +H Y  +  LD+    V + TAL+DM+AKC  L  A  VF  M+ ++   WSA+I  
Sbjct: 220 GTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGG 279

Query: 301 YATHGQGHKSILMFEEMM-KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359
           +    +  ++  +F++M+ +        +    L  C+    +  G    +++  K GI 
Sbjct: 280 FVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMG-TQLHALLAKSGIH 338

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
             +     ++ +  +AG ++EA    DE+ IK T I +  LLS 
Sbjct: 339 ADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDT-ISYGALLSG 381



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 77/162 (47%), Gaps = 5/162 (3%)

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           ++ H   G+L  A  VFD +   D +A++A+I AY+  G  H +I ++  M+  +V P++
Sbjct: 40  LEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNK 99

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
            TF  +L ACS    +  G    ++     G+   +     ++DL  R  R   A     
Sbjct: 100 YTFPFVLKACSALADLCAG-RTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFA 158

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428
           ++P++   + W  +L+  ++H   G+    I  + ++ D  G
Sbjct: 159 KMPMRDV-VAWNAMLAGYANH---GMYHHAIAHLLDMQDRGG 196


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 189/520 (36%), Positives = 293/520 (56%), Gaps = 40/520 (7%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           Q+H    K  L  +L V   LI    +      +  A  + D +   D+V +N+M  GY+
Sbjct: 154 QLHGAVFKVGLDLNLFVGNGLIALYGK---CGCLPEARCVLDEMQSKDVVSWNSMVAGYA 210

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
           ++     A+ +  E+      PD  +  SLL A     +E +                  
Sbjct: 211 QNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENV------------------ 252

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
                    LY E         +F N+ +  +VS+N +I+ Y ++S P +++ L+ ++ +
Sbjct: 253 ---------LYVE--------EMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGK 295

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
             ++P  +T  S L +C  L +L LG+ IHEY+++  L   + +  +LIDM+A+CG L+D
Sbjct: 296 CEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLED 355

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A  VFD M  +D  +W+++I AY   GQG+ ++ +F EM  +  SPD I F+ +L ACSH
Sbjct: 356 AKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSH 415

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
           +GL++EG  YF  M D Y I P I+H+ C+VDLLGR+GR+DEAY  I ++P+K    +W 
Sbjct: 416 SGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWG 475

Query: 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458
            LLSSC  ++N+ +     +++ +L     G YV+LSN+ A+AGRW +V  +R LMK R 
Sbjct: 476 ALLSSCRVYSNMDIGILAADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRR 535

Query: 459 VLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDM 518
           + K+PG S++E+NN V  F +GD  H  S ++ + L  LV ++K +GYVP T    H D+
Sbjct: 536 IRKMPGISNVELNNQVHTFLAGDTYHPQSKEIYEELSVLVGKMKELGYVPKTDSALH-DV 594

Query: 519 EDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           E+E+KE  L  HSEKLAI F +LNT   + IR+ KNLRVC
Sbjct: 595 EEEDKECHLAVHSEKLAIVFAILNTQE-SPIRITKNLRVC 633



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 178/386 (46%), Gaps = 44/386 (11%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +FD IPE +++ +N M R Y  +     A+ +F ++++ G  PD Y++P +LKAC+C
Sbjct: 86  ARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSC 145

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
             ++ L  G QLH    K+GL+ NL+V   LI LY +C  +  AR + + +    VVS+N
Sbjct: 146 --SDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWN 203

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           +++  YA++ + ++AL + RE+     KP   TM S L +     S ++           
Sbjct: 204 SMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENV----------- 252

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
               YV+                    +F N+  K   +W+ MI  Y  +    KS+ ++
Sbjct: 253 ---LYVE-------------------EMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLY 290

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
            +M K +V PD IT   +L AC     +  G    +   ++  + P +     ++D+  R
Sbjct: 291 LQMGKCEVEPDAITCASVLRACGDLSALLLG-RRIHEYVERKKLCPNMLLENSLIDMYAR 349

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG----D 430
            G L++A R  D +  +     W +L+   S++   G     +    E+ +S        
Sbjct: 350 CGCLEDAKRVFDRMKFRDVAS-WTSLI---SAYGMTGQGYNAVALFTEMQNSGQSPDSIA 405

Query: 431 YVILSNLCARAGRWEDVDYLRKLMKD 456
           +V + + C+ +G   +  +  K M D
Sbjct: 406 FVAILSACSHSGLLNEGKFYFKQMTD 431



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 96/196 (48%)

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
           K +H     L  + N  +   L+  YA   +   AR +F+ I E  V+ YN +I +Y  +
Sbjct: 52  KNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNN 111

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
              ++AL +FR++      P   T    L +C+   +L +G  +H  + K GLD  + V 
Sbjct: 112 HLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVG 171

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
             LI ++ KCG L +A  V D M  KD  +W++M+  YA + Q   ++ +  EM   +  
Sbjct: 172 NGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQK 231

Query: 324 PDEITFLGLLYACSHT 339
           PD  T   LL A ++T
Sbjct: 232 PDACTMASLLPAVTNT 247


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 192/548 (35%), Positives = 314/548 (57%), Gaps = 23/548 (4%)

Query: 25  LSLLPRCTS---FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           +++L  C+S    +  + IH+    +  +++L V   ++   T      ++E A  +FD 
Sbjct: 164 VTILSACSSPALVQDGRMIHSCIALSGFESELLVANAVM---TMYGRCGAVEEARKVFDA 220

Query: 82  IPEP--DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEA 139
           + E   D+V +N M   Y  +     AI L+  +    L PD  ++ SLL AC+   AE 
Sbjct: 221 MDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRM---QLRPDKVTYVSLLSACS--SAED 275

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
           +  G+ LH   +   L  N+ V   L+++YA+C     AR +F+ + +  ++S+  II+A
Sbjct: 276 VGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISA 335

Query: 200 YARSSRPNEALSLFRELQE-------RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           Y R     EA  LF+++ E       + +KP  +  ++ L++CA + +L+ GK + E   
Sbjct: 336 YVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAA 395

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHGQGHKSI 311
             GL     V TA+++++ KCG +++A  +FD +  + D Q W+AMI  YA  GQ H+++
Sbjct: 396 SCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQSHEAL 455

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKY-GIVPGIKHYGCMVD 370
            +F  M    V PD  +F+ +L ACSHTGL D+G +YF SM  +Y  +   I+H+GC+ D
Sbjct: 456 KLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVAD 515

Query: 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430
           LLGR GRL EA  F+++LP+K   + W +LL++C +H +L  AK+V  ++  L+      
Sbjct: 516 LLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATG 575

Query: 431 YVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDL 490
           YV LSN+ A   +W  V  +RK M ++GV K  G S+IE+   + +F +GD  H  + ++
Sbjct: 576 YVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREI 635

Query: 491 QKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIR 550
           ++ L +L  ++K  GYVPDT +V H  ++++EKE  L  HSE+LAI  GL++TP GT +R
Sbjct: 636 REELAKLHSQMKECGYVPDTKMVLHF-VDEQEKERLLFSHSERLAIALGLISTPLGTPLR 694

Query: 551 VVKNLRVC 558
           V KNLRVC
Sbjct: 695 VTKNLRVC 702



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 181/382 (47%), Gaps = 30/382 (7%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYS---RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           A   FD + + ++  +  +   ++   +SK  +RA+     +   G+ PD  +F + L +
Sbjct: 11  AKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRAL---ERMRQDGVRPDAVTFITALGS 67

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP-CV 190
           C     E+L +G ++H   +   L  +  V   L+N+Y +C  +  A+R+F  +     V
Sbjct: 68  CG--DPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNV 125

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY 250
           +S++ +  A+A      EAL  FR +    +K T   M++ LS+C+    +  G+ IH  
Sbjct: 126 ISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSC 185

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG--KDTQAWSAMIVAYATHGQGH 308
           I   G +  + V  A++ M+ +CG +++A  VFD M    +D  +W+ M+  Y  + +G 
Sbjct: 186 IALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGK 245

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD---KYGIVPGIKHY 365
            +I +++ M   Q+ PD++T++ LL ACS    V  G      + +   +  ++ G    
Sbjct: 246 DAIQLYQRM---QLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVG---- 298

Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
             +V +  + G   EA    D++  +S  I W T++S+      +  A  + +++ EL+ 
Sbjct: 299 NALVSMYAKCGSHTEARAVFDKMEQRSI-ISWTTIISAYVRRRLVAEACHLFQQMLELEK 357

Query: 426 SHGGD--------YVILSNLCA 439
           +            +V + N CA
Sbjct: 358 NGSSQRVKPDALAFVTILNACA 379



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 137/291 (47%), Gaps = 8/291 (2%)

Query: 168 LYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT 227
           +YA C     A+  F+ + +  + S+  ++ A+A S +  E L     +++  ++P  VT
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 228 MLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS 287
            ++AL SC    SL  G  IH+ +    L+   KV+ AL++M+ KCG L  A  VF  M 
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKME 120

Query: 288 -GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
             ++  +WS M  A+A HG   +++  F  M+   +   +   + +L ACS   LV +G 
Sbjct: 121 RTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG- 179

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
              +S     G    +     ++ + GR G ++EA +  D +      ++   ++ S   
Sbjct: 180 RMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYV 239

Query: 407 HNNLGL-AKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
           HN+ G  A Q+ +R+    D     YV L + C+ A   EDV   R L K 
Sbjct: 240 HNDRGKDAIQLYQRMQLRPDK--VTYVSLLSACSSA---EDVGLGRVLHKQ 285


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 192/551 (34%), Positives = 307/551 (55%), Gaps = 25/551 (4%)

Query: 20  NTPNALSL---LPRCTSFR---GLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSME 73
           ++PNA +       C S        Q+H   IKT  + +  V T LI+   +  T +S  
Sbjct: 52  DSPNAFTFPFAFKSCASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIAS-- 109

Query: 74  HAHLLFDRIPEPD--IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
            A  +FD         V +N +  GYS +     A+ LF ++   G+  +  +   L+  
Sbjct: 110 -ARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPV 168

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           CA  G   L  G  LH  +++ GL+ +L V   L+ +Y  C  V+ AR++F+ + E  ++
Sbjct: 169 CA--GPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLI 226

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           ++NA+I+ YA++      L L+R+++   + P  VT++  LSSCA LG+   G+ + + I
Sbjct: 227 TWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRI 286

Query: 252 K--KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
           +   +G + ++K   ALI+M+A+CG L  A ++FD M+ K+  +W+A+I  Y  HGQG  
Sbjct: 287 ELSGFGFNPFLK--NALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGEL 344

Query: 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369
           ++ +F+EM+ +   PD   F+ +L ACSH GL ++G  YF +M   YG+ PG +HY C+V
Sbjct: 345 AVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVV 404

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429
           DLLGRAGRL+EA + I  + ++    +W  LL +C  H N+ LA+   E++ E + ++ G
Sbjct: 405 DLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNIG 464

Query: 430 DYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTD 489
            YV+LSN+ + AG  E +  +R +M++R + K PGCS +E    +  F +GD  H  + +
Sbjct: 465 YYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQE 524

Query: 490 LQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEI--ALRYHSEKLAITFGLLNTPPGT 547
           +   LD L   +K  G   D       D E   +E+   +  HSEKLAI FGL+NT PGT
Sbjct: 525 IYHMLDGLEDIIKRRGGSNDN------DQESRNEELITGMGVHSEKLAIAFGLINTEPGT 578

Query: 548 TIRVVKNLRVC 558
            I V+KNLRVC
Sbjct: 579 EITVIKNLRVC 589



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 192/379 (50%), Gaps = 10/379 (2%)

Query: 90  FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCF 149
           +N   R  +R +    A+ L+ ++L SG  P+ ++FP   K+CA +       G QLH  
Sbjct: 24  WNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPL--AGSQLHGH 81

Query: 150 AIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE--NISEPCVVSYNAIITAYARSSRPN 207
            IK G     +V T+LI++Y +CS + +AR++F+  + S    V YNA+I  Y+ +SR +
Sbjct: 82  VIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFS 141

Query: 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267
           +A+ LFR++++  +    VTML  +  CA    L  G  +H    ++GLD  + V   L+
Sbjct: 142 DAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLL 201

Query: 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
            M+ +CG +D A  +FD M  K    W+AMI  YA +G     + ++ +M    + PD +
Sbjct: 202 TMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPV 261

Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMR-DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
           T +G+L +C+H G    G      +    +G  P +K+   ++++  R G L +A    D
Sbjct: 262 TLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKN--ALINMYARCGNLVKARAIFD 319

Query: 387 ELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD-SHGGDYVILSNLCARAGRWE 445
            +  K+  I W  +++    H    LA Q+ + +   D+   G  +V + + C+ AG  E
Sbjct: 320 GMTEKNV-ISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTE 378

Query: 446 D-VDYLRKLMKDRGVLKVP 463
             + Y   + +D G+   P
Sbjct: 379 KGLYYFTAMERDYGLQPGP 397



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 111/231 (48%), Gaps = 9/231 (3%)

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY 250
            S+NA +   AR     EAL+L+ ++      P   T   A  SCA L     G  +H +
Sbjct: 22  ASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGH 81

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA--WSAMIVAYATHGQGH 308
           + K G +    V T+LI M+ KC  +  A  VFD        A  ++A+I  Y+ + +  
Sbjct: 82  VIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFS 141

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNY-FYSMRDKYGIVPGIKHYGC 367
            ++L+F +M K  VS + +T LGL+  C+  G +  G+    ++   ++G+   +    C
Sbjct: 142 DAVLLFRQMRKEGVSVNAVTMLGLIPVCA--GPIHLGFGTSLHACSVRFGLDGDLSVGNC 199

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
           ++ +  R G +D A +  D +P K   I W  ++S  + +   GLA  V++
Sbjct: 200 LLTMYVRCGSVDFARKLFDGMPEKGL-ITWNAMISGYAQN---GLAGHVLD 246


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 189/544 (34%), Positives = 306/544 (56%), Gaps = 13/544 (2%)

Query: 22  PNALSLLPRCTSFRGL------KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PNA+++     +F  L      K +H   ++   + ++ V T L++  ++      M  A
Sbjct: 120 PNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSK---FGCMGVA 176

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
             LF+ + E ++V +N +  GYS       AI LF  +   GLL D Y+  SL+ A   V
Sbjct: 177 RQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSV 236

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
           G   L+ G  +H F I+ G  ++ ++ T L+++Y   + V+ A R+F  +S   V ++  
Sbjct: 237 GC--LQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTL 294

Query: 196 IITAYARSSRPNEALSLFRE-LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           ++T ++     + A+  F + L  +NLK   + ++  LSSC+  G+L  G+ +H    K 
Sbjct: 295 MLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKT 354

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
                + V +A+IDM+A CG L+DA   F  M  KD   W+AMI     +G G  +I +F
Sbjct: 355 CFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLF 414

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
            +M  + + PDE TF+ +LYACSH G+V EG   FY M     ++P ++HY C++D+LGR
Sbjct: 415 LQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGR 474

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
           AG+LD AY FI+ +P +    ++ TLL +C  H N+ L  ++ ++IFE++ +  G YV+L
Sbjct: 475 AGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLL 534

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
           SN+ A AG WE V   R  ++ + + K PG SSIE+N  +  F +G+  H     ++  L
Sbjct: 535 SNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGIL 594

Query: 495 DELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
             L+ ++K  GYVP+T+++   D+ D+ K+  L +HSEK+AI FGL+ T P T IR+ KN
Sbjct: 595 KGLILKIKKAGYVPNTNVLLQ-DVSDDMKKDILYHHSEKMAIAFGLMRTKPETIIRITKN 653

Query: 555 LRVC 558
           LR C
Sbjct: 654 LRTC 657



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 104/399 (26%), Positives = 203/399 (50%), Gaps = 14/399 (3%)

Query: 9   ITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLIN---FCTQ 65
           ++ +P  +L        S+L +    + L+QIHA  I + L ++  +   L+N   +C  
Sbjct: 12  LSSNPTQRLSPLAQPHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYC-- 69

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSF 125
                 +  A  +F   P  ++V +  +  G +++   + AI +F E++     P+  + 
Sbjct: 70  ----GLLADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTI 125

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
            S+L A A +G   +   K +HCF ++ G   N++V T L+++Y++   +  AR++FE++
Sbjct: 126 SSVLPAFANLG--LIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESM 183

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245
           SE  VV++NAI++ Y+      EA+ LF  ++ + L     T++S + +   +G L +G 
Sbjct: 184 SERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGT 243

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
            IH +I + G +    + TAL+D++     +DDA  VF  MS KD  AW+ M+  +++  
Sbjct: 244 GIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGR 303

Query: 306 QGHKSILMFEEMMKAQ-VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364
              ++I  F +M+  Q +  D I  +G+L +CSH+G + +G    +++  K      I  
Sbjct: 304 HWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQG-RRVHALAIKTCFANNIFV 362

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
              ++D+    G L++A RF   +  K   + W  +++ 
Sbjct: 363 GSAVIDMYANCGNLEDAKRFFYGMGEKDV-VCWNAMIAG 400



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 137/264 (51%), Gaps = 4/264 (1%)

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
           +Q+H   I  GL  N ++  +L+N Y  C  +  A++IF +     VVS+  +I+  A++
Sbjct: 41  QQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKN 100

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
               EA+ +FRE+   N KP  VT+ S L + A LG + + K +H +  + G +  V V 
Sbjct: 101 DCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVE 160

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
           TAL+DM++K G +  A  +F++MS ++   W+A++  Y+ HG   ++I +F  M +  + 
Sbjct: 161 TALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLL 220

Query: 324 PDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            D  T + L+ A    G +  G   + + +R  Y     IK    ++D+      +D+A+
Sbjct: 221 VDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIK--TALMDIYVSHNCVDDAH 278

Query: 383 RFIDELPIKSTPILWRTLLSSCSS 406
           R   E+ +K     W  +L+  SS
Sbjct: 279 RVFSEMSVKDVAA-WTLMLTGFSS 301


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 183/502 (36%), Positives = 281/502 (55%), Gaps = 10/502 (1%)

Query: 64  TQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDY 123
           T    ++ +  A   FD I  PD+V +N MA  Y +      A+ LF  +L  G+ P   
Sbjct: 397 TTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEGVRPSVA 456

Query: 124 SFPSLLKACACVGAEALEE-GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF 182
           +F + L ACA    +     GK++     + GL  +  V    +N+YA+C  +  AR +F
Sbjct: 457 TFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVF 516

Query: 183 ENIS---EPCVVSYNAIITAYARSSRPNEALSLFRELQ-ERNLKPTDVTMLSALSSCALL 238
           E IS     C+ ++N+++ AY       EA  LF+ ++ E+ +KP  VT ++ L +    
Sbjct: 517 ERISPARRDCI-TWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSR 575

Query: 239 GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG--KDTQAWSA 296
            S+  G+ IH  +   G +    +  AL++M+AKCG LDDA ++FD  S   +D  AW++
Sbjct: 576 TSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTS 635

Query: 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKY 356
           +I  YA +GQ  +++ +F  M +  V P+ +TF+  L AC+H G +++G      M   +
Sbjct: 636 LIAGYAQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHGGKLEQGCELLSGMTPDH 695

Query: 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQV 416
           GI+P  KH+ C+VDLLGR GRLDEA + + E   ++  I W  LL +C +   L   ++ 
Sbjct: 696 GILPASKHFSCIVDLLGRCGRLDEAEKLL-ERTSQADVITWMALLDACKNSKELERGERC 754

Query: 417 IERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVRE 476
            ERI +LD      Y++L+++ A AGRW +   +RK M D+G+   PGCS++EVN  +  
Sbjct: 755 AERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSAVEVNQELHS 814

Query: 477 FFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAI 536
           F +GD  H  S ++   L+ L   +K  GYV DT LV H D+  E KE  L  HSEKLAI
Sbjct: 815 FSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLH-DVSQEHKERLLMRHSEKLAI 873

Query: 537 TFGLLNTPPGTTIRVVKNLRVC 558
            FGL++TP G+ +RV+KNLRVC
Sbjct: 874 AFGLMSTPSGSPLRVIKNLRVC 895



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 116/475 (24%), Positives = 219/475 (46%), Gaps = 43/475 (9%)

Query: 12  SPPPKLCTNTPNALSLLPRCT-----SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQN 66
           +PPP    N+   +S+L  C      S   ++ IH   +   ++ +  V T L++     
Sbjct: 241 APPP----NSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVD---SY 293

Query: 67  PTTSSMEHAHLLF----DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDD 122
               S++ A  +F    D  P   +V  + M     ++  P  ++ LF  +   G  P  
Sbjct: 294 GKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLFFAMNLEGTKPSG 353

Query: 123 YSFPSLLKACAC--VG---AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEA 177
            +  S+L AC+   VG   A  LE+  ++      +    +  + TTL+  YA  +D+  
Sbjct: 354 VTLVSVLNACSMLQVGSATAFVLEQAMEV------VSATRDNVLGTTLLTTYARSNDLPR 407

Query: 178 ARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL 237
           AR  F+ I  P VVS+NA+  AY +  R  EAL LF  +    ++P+  T ++AL++CA 
Sbjct: 408 ARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEGVRPSVATFITALTACAA 467

Query: 238 L---GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS--GKDTQ 292
                +  +GK I   +++ GL+    V  A ++M+AKCG L DA +VF+ +S   +D  
Sbjct: 468 YPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPARRDCI 527

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDEITFLGLLYACSHTGLVDEGWNYFYS 351
            W++M+ AY  HG G ++  +F+ M   + V P+++TF+ +L A +    + +G    ++
Sbjct: 528 TWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQG-REIHA 586

Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL-WRTLLSSCSSHNNL 410
                G          ++++  + G LD+A    D+       ++ W +L+   + +   
Sbjct: 587 RVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLI---AGYAQY 643

Query: 411 GLAKQVIERIFELDDS----HGGDYVILSNLCARAGRWED-VDYLRKLMKDRGVL 460
           G A++ ++  + +       +   ++     C   G+ E   + L  +  D G+L
Sbjct: 644 GQAERALKLFWTMQQQGVRPNHVTFISALTACNHGGKLEQGCELLSGMTPDHGIL 698



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 172/360 (47%), Gaps = 15/360 (4%)

Query: 71  SMEHAHLLFDRIPEP---DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL-LPDDYSFP 126
           S+  A   FDR+P     D+V +N M   + R+ +   A+ LF ++   G   P+  +F 
Sbjct: 191 SLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFV 250

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF--EN 184
           S+L +C   G  +LE+ + +H   +  G+    +V T L++ Y +   ++ A  +F  + 
Sbjct: 251 SVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKG 310

Query: 185 ISEP--CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242
             EP   +V+ +A+I+A  ++  P E+L LF  +     KP+ VT++S L++C++L    
Sbjct: 311 DEEPSTSLVTCSAMISACWQNGWPQESLRLFFAMNLEGTKPSGVTLVSVLNACSMLQVGS 370

Query: 243 LGKWIHEY-IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301
              ++ E  ++     +   + T L+  +A+   L  A + FD +   D  +W+AM  AY
Sbjct: 371 ATAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAY 430

Query: 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH--TGLVDEGWNYFYSMRDKYGIV 359
             H +  +++++FE M+   V P   TF+  L AC+               S+ ++ G+ 
Sbjct: 431 LQHHRSREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLE 490

Query: 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
                    +++  + G L +A    + + P +   I W ++L++   H   GL K+  E
Sbjct: 491 GDTAVANATLNMYAKCGSLADARAVFERISPARRDCITWNSMLAAYGHH---GLGKEAFE 547



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 154/326 (47%), Gaps = 25/326 (7%)

Query: 27  LLPRCTSFRGLKQ-----IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
           LL  C   R LKQ      H ++ +  L N   + + LI     +    ++  A  L DR
Sbjct: 49  LLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLI---VMHAKCGNLAEAEALADR 105

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
                +     M R +     P +A+ LF  +    + P+ ++  +L+ AC+C+G   L 
Sbjct: 106 FA--SVYSCTAMIRAWMEHGRPDKAMELFDRM---EVRPNCHALIALVNACSCLG--NLA 158

Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI---SEPCVVSYNAIIT 198
            G+++H          N  +   LI++Y++C  +  A++ F+ +   S+  VV++NA+I+
Sbjct: 159 AGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMIS 218

Query: 199 AYARSSRPNEALSLFRELQERNLKPTD-VTMLSALSSCALLG--SLDLGKWIHEYIKKYG 255
           A+ R+    EAL LFR++      P + VT +S L SC   G  SL+  + IH  I   G
Sbjct: 219 AFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAG 278

Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVF----DNMSGKDTQAWSAMIVAYATHGQGHKSI 311
           +++   V TAL+D + K G LDDA  VF    D          SAMI A   +G   +S+
Sbjct: 279 IEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESL 338

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACS 337
            +F  M      P  +T + +L ACS
Sbjct: 339 RLFFAMNLEGTKPSGVTLVSVLNACS 364



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 159/297 (53%), Gaps = 29/297 (9%)

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAI--KLGLNSNLYVCTTLINLYAECSDVEAARRI 181
           ++  LL+AC  +   AL++G++LH   +  ++ L+++ ++ + LI ++A+C ++  A  +
Sbjct: 45  TYGCLLQACGRL--RALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEAL 102

Query: 182 FENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSL 241
            +  +   V S  A+I A+    RP++A+ LF  ++   ++P    +++ +++C+ LG+L
Sbjct: 103 ADRFAS--VYSCTAMIRAWMEHGRPDKAMELFDRME---VRPNCHALIALVNACSCLGNL 157

Query: 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM---SGKDTQAWSAMI 298
             G+ IH  I     ++   +  ALI M++KCG L DA   FD +   S +D   W+AMI
Sbjct: 158 AAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMI 217

Query: 299 VAYATHGQGHKSILMFEEMMK-AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG 357
            A+  +G   +++ +F +M +     P+ +TF+ +L +C   GL+         +R  +G
Sbjct: 218 SAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLS-----LEDVRAIHG 272

Query: 358 --IVPGIKHYG----CMVDLLGRAGRLDEAY----RFIDELPIKSTPILWRTLLSSC 404
             +  GI+        +VD  G+ G LD+A+    R  DE P  ++ +    ++S+C
Sbjct: 273 RIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEP-STSLVTCSAMISAC 328


>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic [Vitis vinifera]
 gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
          Length = 533

 Score =  341 bits (874), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 184/514 (35%), Positives = 299/514 (58%), Gaps = 35/514 (6%)

Query: 16  KLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           K  ++ P+   L   CT+ + L++IHA  +KT L      ++ ++ FC  +P    + +A
Sbjct: 19  KFISDHPHLSILEKHCTTMKDLQKIHAHLLKTGLAKHPLAVSPVLAFCATSPG-GDINYA 77

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL-NSGLLPDDYSFPSLLKACAC 134
           +L+F +I  P++  +NT+ RG+S+S TP  AI LF+++L  S + P   ++PS+ KA A 
Sbjct: 78  YLVFTQIHSPNLFSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQ 137

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLY------------------------- 169
           +G      G QLH   IKLGL  + ++  T+I +Y                         
Sbjct: 138 LGLA--HYGAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWN 195

Query: 170 ------AECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKP 223
                 A+C +V+ +R++F+ +     VS+N++I+ Y R+ R  EAL LF ++QE  +KP
Sbjct: 196 SMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKP 255

Query: 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVF 283
           ++ TM+S L++ A LG+L  G+WIH+YI+K   +  V V  ++IDM+ KCG + +A  VF
Sbjct: 256 SEFTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVF 315

Query: 284 DNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVD 343
           +    K   +W+ MI+  A +G  +++I +F  +  + + PD++TF+G+L AC+++GLVD
Sbjct: 316 EMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVD 375

Query: 344 EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
           +   YF  M   Y I P IKHY CMVD LGRAG L+EA   I  +P+    I+W +LLS+
Sbjct: 376 KAKEYFSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSA 435

Query: 404 CSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVP 463
           C  H N+ LAK+  + I +LD +    YV+LSN+ A + ++E+    R  MK++ + K P
Sbjct: 436 CRKHGNVELAKRAAKHIVDLDGNDSCGYVLLSNIYAASDQFEEAMEQRLSMKEKQIEKEP 495

Query: 464 GCSSIEVNNVVREFFSGDGVHSYSTDLQKALDEL 497
           GCS IEVN  + EF +G  +H  + ++   L+EL
Sbjct: 496 GCSLIEVNGEIHEFVAGGRLHPQAQEVYSLLNEL 529


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  341 bits (874), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 196/522 (37%), Positives = 293/522 (56%), Gaps = 19/522 (3%)

Query: 40  IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99
           +H   +K+  + D  ++  LI+         +   A  LF    + D+V +N M  GY +
Sbjct: 22  VHTHVVKSGFECDSYIVNSLIHLYANGKDLGA---AKQLFSLCSDRDVVSWNAMIDGYVK 78

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL 159
                    +F  ++      D  S+ +++   A VG   ++E K+L           NL
Sbjct: 79  RGEMGHTRMVFDRMV----CRDVISWNTIINGYAIVGK--IDEAKRL----FDEMPERNL 128

Query: 160 YVCTTLINLYAECSDVEAARRIFENISEPC--VVSYNAIITAYARSSRPNEALSLFRELQ 217
               ++++ + +C +VE A  +F  +  PC  VVS+N+++  YA+  +PNEAL+LF +++
Sbjct: 129 VSWNSMLSGFVKCGNVEEAFGLFSEM--PCRDVVSWNSMLACYAQCGKPNEALALFDQMR 186

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
              +KPT+ T++S LS+CA LG+LD G  +H YI    ++    V TAL+DM+AKCG++ 
Sbjct: 187 AVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKIS 246

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            A  VF+ M  KD  AW+ +I   A HG   ++  +F+EM +A V P++ITF+ +L ACS
Sbjct: 247 LATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACS 306

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H G+VDEG      M   YGI P ++HY C++DLL RAG L+EA   I  +P++  P   
Sbjct: 307 HAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSAL 366

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
             LL  C  H N  L + V +R+  L   H G Y++LSN+ A A +W+D   +R LMK  
Sbjct: 367 GALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVN 426

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK-MVGYVPDTSLVHHG 516
           G+ KVPG S IE+  +V  F +GD  H  S  +   L+E+   LK  +GY  DT  V   
Sbjct: 427 GISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNEIHTRLKSAIGYSADTGNVLL- 485

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           DME+E+KE AL  HSEKLAI +GLL+      IR+VKNLRVC
Sbjct: 486 DMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVC 527



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 169/332 (50%), Gaps = 16/332 (4%)

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           ++P ++KAC          G  +H   +K G   + Y+  +LI+LYA   D+ AA+++F 
Sbjct: 2   TYPFVIKACNESSVTWF--GLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFS 59

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
             S+  VVS+NA+I  Y +         +F  +  R++    ++  + ++  A++G +D 
Sbjct: 60  LCSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDV----ISWNTIINGYAIVGKIDE 115

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303
            K + + + +  L  +     +++    KCG +++A  +F  M  +D  +W++M+  YA 
Sbjct: 116 AKRLFDEMPERNLVSW----NSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQ 171

Query: 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK 363
            G+ ++++ +F++M    V P E T + LL AC+H G +D+G +    + D    V  I 
Sbjct: 172 CGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIV 231

Query: 364 HYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
               +VD+  + G++  A +  + +  K   + W T+++  + H ++  A+Q+ + + E 
Sbjct: 232 GTA-LVDMYAKCGKISLATQVFNAMESKDV-LAWNTIIAGMAIHGHVKEAQQLFKEMKEA 289

Query: 424 D-DSHGGDYVILSNLCARAGRWEDVDYLRKLM 454
             + +   +V + + C+ AG    VD  +KL+
Sbjct: 290 SVEPNDITFVAMLSACSHAGM---VDEGQKLL 318


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  341 bits (874), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 175/466 (37%), Positives = 281/466 (60%), Gaps = 3/466 (0%)

Query: 93  MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
           M  GY       +A+ LF  +  SG   D  +  +  KAC C+    L++GKQ+H  AIK
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCL--VLLDQGKQIHAHAIK 58

Query: 153 LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL 212
            G +S+L+V + ++++Y +C D+  A  +F  IS P  V++ ++I+    +   ++AL +
Sbjct: 59  AGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRI 118

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           +  +++  + P + T  + + + + + +L+ G+ +H  + K        V T+L+DM+AK
Sbjct: 119 YHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAK 178

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
           CG ++DA  +F  M+ ++   W+AM+V  A HG   +++ +F+ M    + PD ++F+G+
Sbjct: 179 CGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGI 238

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L ACSH GL  E + Y +SM + YGI P I+HY C+VD LGRAG + EA + I+ +P K+
Sbjct: 239 LSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKA 298

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452
           +  + R LL +C    ++   K+V  R+F L+      YV+LSN+ A A RW+DV   RK
Sbjct: 299 SASINRALLGACRIQGDVEXGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARK 358

Query: 453 LMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSL 512
           +MK + V K PG S I+V N++  F   D  H  +  +   ++E++K ++  GYVPDT  
Sbjct: 359 MMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEF 418

Query: 513 VHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           V   D+EDEEKE +L YHSEKLAI +GL++TP  TTIRV+KNLRVC
Sbjct: 419 VLL-DVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVC 463



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 146/253 (57%), Gaps = 6/253 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           KQIHA  IK    +DL+V + +++   +      M +A ++F+ I  PD V + +M  G 
Sbjct: 50  KQIHAHAIKAGFDSDLHVNSGILDMYIK---CGDMVNAGIVFNYISAPDDVAWTSMISGC 106

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
             +    +A+ ++  +  S ++PD+Y+F +L+KA +CV   ALE+G+QLH   IKL   S
Sbjct: 107 VDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCV--TALEQGRQLHANVIKLDCVS 164

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           + +V T+L+++YA+C ++E A R+F+ ++   +  +NA++   A+     EA++LF+ ++
Sbjct: 165 DPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMK 224

Query: 218 ERNLKPTDVTMLSALSSCALLG-SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
              ++P  V+ +  LS+C+  G + +  +++H     YG++  ++  + L+D   + G +
Sbjct: 225 SHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLV 284

Query: 277 DDAVSVFDNMSGK 289
            +A  V + M  K
Sbjct: 285 QEADKVIETMPFK 297


>gi|413941558|gb|AFW74207.1| hypothetical protein ZEAMMB73_978994 [Zea mays]
          Length = 580

 Score =  341 bits (874), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 195/541 (36%), Positives = 312/541 (57%), Gaps = 8/541 (1%)

Query: 20  NTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLF 79
            +P   SLL        LKQ HA  + +   + L ++TKL          S      LL 
Sbjct: 6   RSPEYNSLLLAGPRLGPLKQAHARLVVSGHGDSLPLITKLATLAVAAGAASYAR---LLA 62

Query: 80  DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEA 139
              P PD  LF ++ R  +R   P  A+  +  LL + L    ++F S+ KACA +   A
Sbjct: 63  ASHPAPDSFLFCSLTRATARRGLPAAALAFYRCLLAAALPFSSFAFTSVAKACADL--SA 120

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
           +  G  +H  A+ LGL SN +V T+L+ LY++C  ++ AR++F+ I +  VV++NA+I+ 
Sbjct: 121 IRAGMGIHAHAVLLGLGSNRFVQTSLVVLYSKCGQLDVARKLFDAIRDKSVVAWNAMISG 180

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
           Y ++     A+ ++RE+Q     P   T ++ LS+CA  G+LDLG+ + + I    ++  
Sbjct: 181 YEQNGLAGRAIEVYREMQMAGEAPDSATFVATLSACAQAGALDLGRQVDKLIVSERMEMN 240

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           V +  AL++M+A+CG ++ A   F+ +  ++   W++MI  Y  HG G +++ +F  M +
Sbjct: 241 VVLGAALVNMYARCGLVNKAREWFNMLQERNVVTWTSMIAGYGMHGHGGEAVKLFNLMRQ 300

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
               P+++TF+ +L AC+H GLV EG + F SM+  YG+VP ++HY  MVD+ GRAG LD
Sbjct: 301 QGPPPNDVTFVAVLSACAHAGLVSEGRDAFASMKSVYGLVPRVEHYCSMVDMYGRAGLLD 360

Query: 380 EAYRFI-DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438
           +A RFI D +P +  P +W  +L +C  H +  L  +V ER+  L+       V+LSNL 
Sbjct: 361 DAMRFIHDSIPGEPGPEVWTAMLGACKMHKDFNLGVEVAERLIALEPESPSHRVLLSNLY 420

Query: 439 ARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELV 498
           A +G+   V+ +R  M  R + K  G S IE+  V   F  G+  H  ++++ + L++L+
Sbjct: 421 ALSGKMNHVEKVRDTMIKRRLKKPIGYSLIEIAGVAHLFRMGEKSHPKTSEIYQYLEKLI 480

Query: 499 KELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTT-IRVVKNLRV 557
           +++  VGYVP T  V H ++E+EE+E ALRYH EKLA+ FGL+ T   TT IR++KNLR+
Sbjct: 481 EKITDVGYVPKTDSVLH-ELEEEEREFALRYHGEKLAVAFGLMMTSGCTTPIRIIKNLRI 539

Query: 558 C 558
           C
Sbjct: 540 C 540


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 181/521 (34%), Positives = 311/521 (59%), Gaps = 6/521 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K  HA  +   L+ DL     LIN  ++     S++ A  +FD +P   +V +NTM    
Sbjct: 84  KACHAQILLMGLKTDLLTSNILINMYSK---CGSVDFARQVFDEMPSRSLVSWNTMIGSL 140

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           +++     A+ L +++   G    +++  S+L  CAC    AL E + LH FAIK  ++ 
Sbjct: 141 TQNGEENEALDLLLQMQREGTPFSEFTISSVL--CACAAKCALSECQLLHAFAIKAAMDL 198

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           N++V T L+++YA+C  ++ A  +FE++ +  VV+++++   Y ++    +AL+LFR+  
Sbjct: 199 NVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAW 258

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           E  LK     M S + +CA L ++  GK ++  + K G    + V ++LIDM+AKCG ++
Sbjct: 259 ETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIE 318

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           ++  VF ++  ++   W+AMI   + H +  + +++FE+M +  +SP+++TF+ +L AC 
Sbjct: 319 ESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACG 378

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H GLV +G  YF  M  ++ + P + HY CMVD L RAG++ EAY  I +LP  ++  +W
Sbjct: 379 HMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMW 438

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
            +LL+SC +H NL LA+   +++F+++  + G+Y++LSN+ A  G+W++V  +RKL+K+ 
Sbjct: 439 GSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKES 498

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
            V K  G S IE+ + V  F  G+  H    ++   L+E++ EL+ +GY  +T    H  
Sbjct: 499 DVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQV 558

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            E  ++E+ LR+HSEKLA T GLL  PP   IR++KNLR+C
Sbjct: 559 GESIKQEL-LRHHSEKLAFTMGLLFLPPNAPIRIMKNLRIC 598



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 142/274 (51%), Gaps = 2/274 (0%)

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
           C   + L +GK  H   + +GL ++L     LIN+Y++C  V+ AR++F+ +    +VS+
Sbjct: 74  CAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSW 133

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           N +I +  ++   NEAL L  ++Q      ++ T+ S L +CA   +L   + +H +  K
Sbjct: 134 NTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIK 193

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
             +D  V V TAL+D++AKCG + DAV VF++M  +    WS+M   Y  +    +++ +
Sbjct: 194 AAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALAL 253

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           F +  +  +  D+     ++ AC+    + EG     ++  K G    I     ++D+  
Sbjct: 254 FRKAWETGLKHDQFLMSSVICACAGLAAMIEG-KQVNALLSKSGFCSNIFVASSLIDMYA 312

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
           + G ++E+Y+   ++  K   +LW  ++S  S H
Sbjct: 313 KCGGIEESYKVFRDVE-KRNVVLWNAMISGLSRH 345


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 188/545 (34%), Positives = 309/545 (56%), Gaps = 16/545 (2%)

Query: 20   NTPNALSLLPRCTS----FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
            ++   LS+LP C      F G + +H  ++KT L  + ++   L++  +     S     
Sbjct: 510  DSTTLLSVLPACARSHYWFVG-RVVHGYSVKTGLIGETSLANALLDMYSN---CSDWHST 565

Query: 76   HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
            + +F  + + ++V +  M   Y+R+    +   L  E++  G+ PD ++  S+L   A  
Sbjct: 566  NQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFA-- 623

Query: 136  GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
            G E+L++GK +H +AI+ G+   L V   L+ +Y  C ++E AR +F++++   ++S+N 
Sbjct: 624  GDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNT 683

Query: 196  IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
            +I  Y+R++  NE+ SLF ++  +  KP  VTM   L + A + SL+ G+ IH Y  + G
Sbjct: 684  LIGGYSRNNFANESFSLFSDMLLQ-FKPNTVTMTCILPAVASISSLERGREIHAYALRRG 742

Query: 256  LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
              +    + AL+DM+ KCG L  A  +FD ++ K+  +W+ MI  Y  HG G  ++ +FE
Sbjct: 743  FLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFE 802

Query: 316  EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
            +M  + V PD  +F  +LYAC H+GL  EGW +F +MR +Y I P +KHY C+VDLL   
Sbjct: 803  QMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHT 862

Query: 376  GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
            G L EA+ FI+ +PI+    +W +LL  C  H ++ LA++V +R+F+L+  + G YV+L+
Sbjct: 863  GNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLA 922

Query: 436  NLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALD 495
            N+ A A RWE V  L+  +  RG+ +  GCS IEV   V  F + +  H     + + LD
Sbjct: 923  NIYAEAERWEAVKKLKNKIGGRGLRENTGCSWIEVRGKVHVFIADNRNHPEWNRIAEFLD 982

Query: 496  ELVKELKMVGYVPDT--SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVK 553
             + + ++  G+ P    SL+   D   +E   AL  HS KLA+TFG+L+ P G  IRV K
Sbjct: 983  HVARRMREEGHDPKKKYSLMGANDAVHDE---ALCGHSSKLAVTFGVLHLPEGRPIRVTK 1039

Query: 554  NLRVC 558
            N +VC
Sbjct: 1040 NSKVC 1044



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 199/396 (50%), Gaps = 43/396 (10%)

Query: 75  AHLLFDRIPE--PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
           A ++FD +P    D+ ++ ++   Y+++      + LF ++   G+ PD ++   +LK  
Sbjct: 149 ARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCI 208

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
           A +G+  + EG+ +H    KLGL     V   LI LY+ C  +E A ++F+++     +S
Sbjct: 209 ASLGS--ITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAIS 266

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           +N+ I+ Y  +   + A+ LF ++     + + VT+LS L +CA LG   +GK +H Y  
Sbjct: 267 WNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSM 326

Query: 253 KYGLDKYVK---------VNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYA 302
           K GL   ++         + + L+ M+ KCG +  A  VFD M  K +   W+ ++  YA
Sbjct: 327 KSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYA 386

Query: 303 THGQGHKSILMFEEMMKAQVSPDEITFLGLL-----YACSHTGLVDEGWNYFYSMRDKYG 357
              +  +S+L+FE+M +  ++PDE     LL      +C+  GLV  G    Y ++  +G
Sbjct: 387 KAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHG----YLVKLGFG 442

Query: 358 IVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
               + +   ++    ++  +D A    D +P + T I W +++S C+S+   GL  + I
Sbjct: 443 TQCAVCN--ALISFYAKSNMIDNAVLVFDRMPHQDT-ISWNSVISGCTSN---GLNSEAI 496

Query: 418 E---RIF----ELDDSHGGDYVILSNL--CARAGRW 444
           E   R++    ELD +      +LS L  CAR+  W
Sbjct: 497 ELFVRMWMQGHELDST-----TLLSVLPACARSHYW 527



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 188/396 (47%), Gaps = 18/396 (4%)

Query: 25  LSLLPRCTSFRGL----KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTT------SSMEH 74
           LS+LP C    G     K +H  ++K+ L  DL  +   I+    +           M  
Sbjct: 303 LSVLPACAEL-GFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGS 361

Query: 75  AHLLFDRIP-EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
           A  +FD +P + ++ ++N +  GY+++     ++ LF ++   G+ PD+++   LLK   
Sbjct: 362 ARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCIT 421

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
           C+      +G   H + +KLG  +   VC  LI+ YA+ + ++ A  +F+ +     +S+
Sbjct: 422 CLSCA--RDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISW 479

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           N++I+    +   +EA+ LF  +  +  +    T+LS L +CA      +G+ +H Y  K
Sbjct: 480 NSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVK 539

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
            GL     +  AL+DM++ C        +F NM+ K+  +W+AMI +Y   G   K   +
Sbjct: 540 TGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGL 599

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLL 372
            +EM+   + PD      +L+  +    + +G + + Y++R+  G+   +     ++++ 
Sbjct: 600 LQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRN--GMEKLLPVANALMEMY 657

Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408
                ++EA    D +  K   I W TL+   S +N
Sbjct: 658 VNCRNMEEARLVFDHVTNKDI-ISWNTLIGGYSRNN 692



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 164/340 (48%), Gaps = 21/340 (6%)

Query: 16  KLCTNTPNA--LSLLPRCTSFRGL----KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTT 69
           + C  +P+A  +S + +C +  G     + IH +  K  L     V   LI   ++    
Sbjct: 190 QCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSR---C 246

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129
             ME A  +FD +   D + +N+   GY  +    RA+ LF ++ + G      +  S+L
Sbjct: 247 GCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVL 306

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNL---------YVCTTLINLYAECSDVEAARR 180
            ACA +G E +  GK +H +++K GL  +L          + + L+ +Y +C D+ +ARR
Sbjct: 307 PACAELGFELV--GKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARR 364

Query: 181 IFENI-SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG 239
           +F+ + S+  V  +N I+  YA+++   E+L LF ++ E  + P +  +   L     L 
Sbjct: 365 VFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLS 424

Query: 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIV 299
               G   H Y+ K G      V  ALI  +AK   +D+AV VFD M  +DT +W+++I 
Sbjct: 425 CARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVIS 484

Query: 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
              ++G   ++I +F  M       D  T L +L AC+ +
Sbjct: 485 GCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARS 524



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 133/269 (49%), Gaps = 10/269 (3%)

Query: 165 LINLYAECSDVEAARRIFENISEPC--VVSYNAIITAYARSSRPNEALSLFRELQERNLK 222
           L+  Y +C D+  AR +F+ +      V  + ++++AYA++    E +SLFR++Q   + 
Sbjct: 136 LVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVS 195

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
           P    +   L   A LGS+  G+ IH  ++K GL +   V  ALI ++++CG ++DA+ V
Sbjct: 196 PDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQV 255

Query: 283 FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342
           FD+M  +D  +W++ I  Y ++G   +++ +F +M         +T L +L AC+  G  
Sbjct: 256 FDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFE 315

Query: 343 DEG-WNYFYSMR-----DKYGIVPGIKHY--GCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
             G   + YSM+     D   +  GI       +V +  + G +  A R  D +P K   
Sbjct: 316 LVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNV 375

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
            +W  ++   +       +  + E++ EL
Sbjct: 376 HVWNLIMGGYAKAAEFEESLLLFEQMHEL 404


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 168/479 (35%), Positives = 288/479 (60%), Gaps = 5/479 (1%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           Q+H +++K+  Q+++ V   +++   +     ++  A L+F+ +   D V +N +   + 
Sbjct: 334 QVHGLSMKSLCQSNICVANAILDMYGK---CGALVEACLVFEEMVSRDAVSWNAIIAAHE 390

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
           ++    + + LFV +L SG+ PD++++ S+LKACA  G +AL  G ++H   IK  +  +
Sbjct: 391 QNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACA--GWQALNCGMEIHNRIIKSRMGLD 448

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
            +V   LI++Y++C  +E A ++ + ++E  VVS+NAII+ ++   +  EA   F ++ E
Sbjct: 449 SFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLE 508

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
             + P + T  + L +CA L +++LGK IH  I K  L     +++ L+DM++KCG + D
Sbjct: 509 MGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQD 568

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
              +F+    +D   W+AM+  YA HG G +++ +FE M    V P+  TFL +L AC H
Sbjct: 569 FQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGH 628

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
            GLV++G +YF+SM   YG+ P ++HY C+VD++GR+G++ +A   I+ +P ++  ++WR
Sbjct: 629 MGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWR 688

Query: 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458
           TLLS C  H N+ +A++    I +L+      YV+LSN+ A AG W +V  LRK+M+  G
Sbjct: 689 TLLSXCKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNG 748

Query: 459 VLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           + K PGCS IE+ + V  F  GD  H  S ++ + LD L  E+K VGY+PDT  + + D
Sbjct: 749 LKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENLDVLTDEMKWVGYMPDTDFILNDD 807



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 196/389 (50%), Gaps = 14/389 (3%)

Query: 36  GLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMAR 95
           G  Q+H   +KT    D+ + T  ++   +    S  + ++ LF+ +P  ++  +N +  
Sbjct: 229 GALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLS--DCSNQLFNSLPNHNLQSYNAIIV 286

Query: 96  GYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155
           GY+RS   I A+ +F  L  SGL  D+ S     +ACA +  +   EG Q+H  ++K   
Sbjct: 287 GYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDL--EGLQVHGLSMKSLC 344

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
            SN+ V   ++++Y +C  +  A  +FE +     VS+NAII A+ ++    + LSLF  
Sbjct: 345 QSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVW 404

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK--YGLDKYVKVNTALIDMHAKC 273
           + +  ++P + T  S L +CA   +L+ G  IH  I K   GLD +V +  ALIDM++KC
Sbjct: 405 MLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGI--ALIDMYSKC 462

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
           G ++ A  + D ++ +   +W+A+I  ++   Q  ++   F +M++  V PD  T+  +L
Sbjct: 463 GMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATIL 522

Query: 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
             C++   V+ G    ++   K  +         +VD+  + G + + ++ I E      
Sbjct: 523 DTCANLVTVELG-KQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQD-FQLIFEKAPNRD 580

Query: 394 PILWRTLLSSCSSHNNLGLAKQVIERIFE 422
            + W  ++   + H   GL ++ + +IFE
Sbjct: 581 FVTWNAMVCGYAQH---GLGEEAL-KIFE 605



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 128/515 (24%), Positives = 222/515 (43%), Gaps = 92/515 (17%)

Query: 3   TTPSPPIT--QSPPPKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLT 57
           T P  P +  Q+ P K  T +     +   C+  + L   KQ HA  I T  +  + V  
Sbjct: 26  TLPISPFSSYQATPTKKKTFS----HIFQECSDRKALCPGKQAHARMILTEFKPTVFVTN 81

Query: 58  KLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLF------- 110
            LI    +    S +  A  +FD +P+ D V +N M  GY+       A  LF       
Sbjct: 82  CLIQMYIK---CSDLGFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTG 138

Query: 111 ---VELLN-----SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVC 162
              VEL +      G + D  +F  +LK+C+ +  E    G Q+H  A+K+G + ++   
Sbjct: 139 CGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSL--EDHGGGIQIHGLAVKMGFDCDVVTG 196

Query: 163 TTLINLYAEC-------------------------------------SDV---------- 175
           + L+++YA+C                                     +DV          
Sbjct: 197 SALLDMYAKCCVQNDDLRGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMY 256

Query: 176 -------EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTM 228
                  + + ++F ++    + SYNAII  YARS +  EAL +FR LQ+  L   +V++
Sbjct: 257 MKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSL 316

Query: 229 LSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG 288
             A  +CA++     G  +H    K      + V  A++DM+ KCG L +A  VF+ M  
Sbjct: 317 SGAXRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVS 376

Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW-- 346
           +D  +W+A+I A+  +G   K++ +F  M+++ + PDE T+  +L AC+    ++ G   
Sbjct: 377 RDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEI 436

Query: 347 -NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS 405
            N     R       GI     ++D+  + G +++A +  D L  + T + W  ++S  S
Sbjct: 437 HNRIIKSRMGLDSFVGI----ALIDMYSKCGMMEKAEKLHDRLA-EQTVVSWNAIISGFS 491

Query: 406 SHNNLGLAKQVIERIFELD-DSHGGDYVILSNLCA 439
                  A++   ++ E+  D     Y  + + CA
Sbjct: 492 LQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCA 526



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 90/398 (22%), Positives = 147/398 (36%), Gaps = 85/398 (21%)

Query: 93  MARGYSRSKTPIRAIFLFVELLNSGLLP------------DDYSFPSLLKACACVGAEAL 140
           MA   SR   PIR  F F        LP               +F  + + C+    +AL
Sbjct: 1   MAPHTSRHLFPIRFFFNFQSKSPFKTLPISPFSSYQATPTKKKTFSHIFQECS--DRKAL 58

Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY 200
             GKQ H   I       ++V   LI +Y +CSD+  A ++F+ + +   VS+NA++  Y
Sbjct: 59  CPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGY 118

Query: 201 ARSSRPNEALSLFRELQERNLKPTDV---------------TMLSALSSCALLGSLDLGK 245
           A       A  LF  +        ++               T    L SC+ L     G 
Sbjct: 119 AGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGI 178

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD----AVSVFDNMS-------------- 287
            IH    K G D  V   +AL+DM+AKC   +D     + +F  M               
Sbjct: 179 QIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEMQKAGVGALQLHGHAL 238

Query: 288 ----GKDT--------------------------------QAWSAMIVAYATHGQGHKSI 311
               G D                                 Q+++A+IV YA   +G +++
Sbjct: 239 KTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEAL 298

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
            MF  + K+ +  DE++  G   AC+      EG    + +  K      I     ++D+
Sbjct: 299 GMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQ-VHGLSMKSLCQSNICVANAILDM 357

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
            G+ G L EA    +E+ +    + W  ++++   + N
Sbjct: 358 YGKCGALVEACLVFEEM-VSRDAVSWNAIIAAHEQNGN 394


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 169/479 (35%), Positives = 288/479 (60%), Gaps = 5/479 (1%)

Query: 39  QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98
           Q+H +++K+  Q+++ V   +++   +     ++  A L+F+ +   D V +N +   + 
Sbjct: 397 QVHGLSMKSLCQSNICVANAILDMYGK---CGALVEACLVFEEMVSRDAVSWNAIIAAHE 453

Query: 99  RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
           ++    + + LFV +L SG+ PD++++ S+LKACA  G +AL  G ++H   IK  L  +
Sbjct: 454 QNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACA--GWQALNCGMEIHNRIIKSRLGLD 511

Query: 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
            +V   LI++Y++C  +E A ++ + ++E  VVS+NAII+ ++   +  EA   F ++ E
Sbjct: 512 SFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLE 571

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
             + P + T  + L +CA L +++LGK IH  I K  L     +++ L+DM++KCG + D
Sbjct: 572 MGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQD 631

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
              +F+    +D   W+AM+  YA HG G +++ +FE M    V P+  TFL +L AC H
Sbjct: 632 FQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGH 691

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
            GLV++G +YF+SM   YG+ P ++HY C+VD++GR+G++ +A   I+ +P ++  ++WR
Sbjct: 692 MGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWR 751

Query: 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458
           TLLS C  H N+ +A++    I +L+      YV+LSN+ A AG W +V  LRK+M+  G
Sbjct: 752 TLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNG 811

Query: 459 VLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
           + K PGCS IE+ + V  F  GD  H  S ++ + LD L  E+K VGY+PDT  + + D
Sbjct: 812 LKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENLDVLTDEMKWVGYMPDTDFILNDD 870



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 208/420 (49%), Gaps = 17/420 (4%)

Query: 27  LLPRCTSFR---GLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           +L  C+S     G  QIH + +K     D+   + L++   +      ++ +   F  +P
Sbjct: 180 VLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAK---CKKLDCSIQFFHSMP 236

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
           E + V ++ +  G  ++      + LF E+  +G+     +F S+ ++CA  G  AL  G
Sbjct: 237 EKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCA--GLSALRLG 294

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
            QLH  A+K    +++ + T  +++Y +C+++  A+++F ++    + SYNAII  YARS
Sbjct: 295 SQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARS 354

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
            +  EAL +FR LQ+  L   +V++  A  +CA++     G  +H    K      + V 
Sbjct: 355 DKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVA 414

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
            A++DM+ KCG L +A  VF+ M  +D  +W+A+I A+  +G   K++ +F  M+++ + 
Sbjct: 415 NAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGME 474

Query: 324 PDEITFLGLLYACSHTGLVDEGW---NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
           PDE T+  +L AC+    ++ G    N     R       GI     ++D+  + G +++
Sbjct: 475 PDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGI----ALIDMYSKCGMMEK 530

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD-DSHGGDYVILSNLCA 439
           A +  D L  + T + W  ++S  S       A++   ++ E+  D     Y  + + CA
Sbjct: 531 AEKLHDRLA-EQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCA 589



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/402 (26%), Positives = 200/402 (49%), Gaps = 18/402 (4%)

Query: 26  SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+   C     L+   Q+H   +KT    D+ + T  ++   +    +++  A  LF+ +
Sbjct: 280 SVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMK---CNNLSDAQKLFNSL 336

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           P  ++  +N +  GY+RS   I A+ +F  L  SGL  D+ S     +ACA +  +   E
Sbjct: 337 PNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDL--E 394

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           G Q+H  ++K    SN+ V   ++++Y +C  +  A  +FE +     VS+NAII A+ +
Sbjct: 395 GLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQ 454

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK--YGLDKYV 260
           +    + LSLF  + +  ++P + T  S L +CA   +L+ G  IH  I K   GLD +V
Sbjct: 455 NGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFV 514

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            +  ALIDM++KCG ++ A  + D ++ +   +W+A+I  ++   Q  ++   F +M++ 
Sbjct: 515 GI--ALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEM 572

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
            V PD  T+  +L  C++   V+ G    ++   K  +         +VD+  + G + +
Sbjct: 573 GVDPDNFTYATILDTCANLVTVELG-KQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQD 631

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
            ++ I E       + W  ++   + H   GL ++ + +IFE
Sbjct: 632 -FQLIFEKAPNRDFVTWNAMVCGYAQH---GLGEEAL-KIFE 668



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 175/335 (52%), Gaps = 4/335 (1%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  LFD +PE D+V +N++  GY  +    + I +F+++   G + D  +F  +LK+C+ 
Sbjct: 127 AQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSS 186

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           +  E    G Q+H  A+K+G + ++   + L+++YA+C  ++ + + F ++ E   VS++
Sbjct: 187 L--EDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWS 244

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           AII    ++      L LF+E+Q+  +  +  T  S   SCA L +L LG  +H +  K 
Sbjct: 245 AIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKT 304

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
                V + TA +DM+ KC  L DA  +F+++   + Q+++A+IV YA   +G +++ MF
Sbjct: 305 DFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMF 364

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
             + K+ +  DE++  G   AC+      EG    + +  K      I     ++D+ G+
Sbjct: 365 RLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQ-VHGLSMKSLCQSNICVANAILDMYGK 423

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
            G L EA    +E+ +    + W  ++++   + N
Sbjct: 424 CGALVEACLVFEEM-VSRDAVSWNAIIAAHEQNGN 457



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 144/343 (41%), Gaps = 52/343 (15%)

Query: 93  MARGYSRSKTPIRAIFLFVELLNSGLLP------------DDYSFPSLLKACACVGAEAL 140
           MA   SR   PIR  F F        LP               +F  + + C+    +AL
Sbjct: 1   MAPHTSRHLFPIRFFFNFQSKSPFKTLPISPFSSYQATPTKKKTFSHIFQECS--DRKAL 58

Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY 200
             GKQ H   I       ++V   LI +Y +CSD+E A ++F+ + +   VS+NA++  Y
Sbjct: 59  CPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGY 118

Query: 201 ARSSRPNEALSLFRELQERNL-----------------KPTDV--------------TML 229
           A       A  LF  + ER++                 K  DV              T  
Sbjct: 119 AGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFA 178

Query: 230 SALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK 289
             L SC+ L     G  IH    K G D  V   +AL+DM+AKC +LD ++  F +M  K
Sbjct: 179 VVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEK 238

Query: 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-Y 348
           +  +WSA+I     +      + +F+EM KA V   + TF  +  +C+    +  G   +
Sbjct: 239 NWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLH 298

Query: 349 FYSMRDKYG--IVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389
            ++++  +G  +V G       +D+  +   L +A +  + LP
Sbjct: 299 GHALKTDFGTDVVIGT----ATLDMYMKCNNLSDAQKLFNSLP 337



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 101/256 (39%), Gaps = 52/256 (20%)

Query: 164 TLINLYAECSDVEA--------ARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
           T  +++ ECSD +A        AR I     +P V   N +I  Y + S    A  +F  
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEF-KPTVFVTNCLIQMYIKCSDLEFAFKVFDG 102

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
           + +R                      D   W                  A++  +A  G 
Sbjct: 103 MPQR----------------------DTVSW-----------------NAMLFGYAGRGD 123

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           +  A  +FD M  +D  +W+++I  Y  +G   K I +F +M +     D  TF  +L +
Sbjct: 124 IGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKS 183

Query: 336 CSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           CS   L D G     + +  K G    +     ++D+  +  +LD + +F   +P K+  
Sbjct: 184 CS--SLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNW- 240

Query: 395 ILWRTLLSSCSSHNNL 410
           + W  +++ C  +++L
Sbjct: 241 VSWSAIIAGCVQNDDL 256


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 193/527 (36%), Positives = 306/527 (58%), Gaps = 9/527 (1%)

Query: 34  FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM 93
            R  K+IH   +++ L+ D+ V T L++   +      M++A  LFD+I +  IV +N M
Sbjct: 243 LRNGKEIHCQMMRSRLELDVMVQTSLVDMYAK---CGRMDYAERLFDQITDKSIVAWNAM 299

Query: 94  ARGYSRSKTPIRAIFLFVELLNSG--LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAI 151
             GYS +     + F +V  +  G  L PD  +  +LL  CA +  EA+  GK +H FAI
Sbjct: 300 IGGYSLNAQSFES-FAYVRKMQEGGKLHPDWITMINLLPPCAQL--EAILLGKSVHGFAI 356

Query: 152 KLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALS 211
           + G   +L + T L+++Y EC  ++ A  +F  ++E  ++S+NA+I +Y ++    +A++
Sbjct: 357 RNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMT 416

Query: 212 LFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271
           LF++L  + LKP   T+ S L + A L SL   + IH Y+ K  LD    V+ +++ M+ 
Sbjct: 417 LFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYG 476

Query: 272 KCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLG 331
           KCG L  A  +FD M+ KD  +W+ +I+AYA HG G  SI +F EM +    P+  TF+ 
Sbjct: 477 KCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVS 536

Query: 332 LLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIK 391
           LL +CS  GLV+EGW YF SM+  Y I PGI+HYGC++DL+GR G LD A  FI+E+P+ 
Sbjct: 537 LLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRTGNLDHAKNFIEEMPLA 596

Query: 392 STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLR 451
            T  +W +LL++  +  ++ LA+   E I  L+  + G YV+LSN+ A AGRWEDV+ ++
Sbjct: 597 PTARIWGSLLTASRNKGDVELAEIAAEHILSLEHDNTGCYVLLSNMYAEAGRWEDVERIK 656

Query: 452 KLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTS 511
             MK  G+ K  GCS +++++    F + D   +    +   LD + K++    YV   +
Sbjct: 657 FHMKKEGLEKSVGCSVVDLSSKTFRFVNQDRSDNEINMVYDVLDIISKKIGEDVYVHSLT 716

Query: 512 LVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
                D+E +    A + HS +LAI FGL++T  G  + V KN+R+C
Sbjct: 717 KFRPSDLEKKRANSA-KSHSLRLAICFGLISTTIGNPVLVRKNIRIC 762



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 185/334 (55%), Gaps = 7/334 (2%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           M++A  LF+ + + D  ++N M RG+  +     A+  +  +   G+  D++++P ++KA
Sbjct: 76  MKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDNFTYPFVIKA 135

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C   G   L EG+++H   IK GL+ ++Y+  +LI +YA+   +E+A  +F  +    +V
Sbjct: 136 CG--GLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLV 193

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           S+N++I+ Y        +LS FRE+Q   +K    +++  L +C+L G L  GK IH  +
Sbjct: 194 SWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQM 253

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            +  L+  V V T+L+DM+AKCGR+D A  +FD ++ K   AW+AMI  Y+ + Q  +S 
Sbjct: 254 MRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESF 313

Query: 312 LMFEEMMK-AQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMV 369
               +M +  ++ PD IT + LL  C+    +  G + + +++R+  G +P +     +V
Sbjct: 314 AYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRN--GFLPHLVLETALV 371

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
           D+ G  G+L  A     ++  ++  I W  +++S
Sbjct: 372 DMYGECGKLKPAECLFGQMNERNL-ISWNAMIAS 404



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 120/244 (49%), Gaps = 4/244 (1%)

Query: 163 TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK 222
           T  ++ Y E   ++ A  +FEN+ +     +N +I  +  +    +A+  +  ++   ++
Sbjct: 64  TRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVR 123

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
             + T    + +C  L  L  G+ +H  + K GLD  + +  +LI M+AK G ++ A  V
Sbjct: 124 GDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMV 183

Query: 283 FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342
           F  M  +D  +W++MI  Y + G G +S+  F EM  + +  D  + +G+L ACS  G +
Sbjct: 184 FREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFL 243

Query: 343 DEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
             G   +   MR +  +   ++    +VD+  + GR+D A R  D++  KS  + W  ++
Sbjct: 244 RNGKEIHCQMMRSRLELDVMVQT--SLVDMYAKCGRMDYAERLFDQITDKSI-VAWNAMI 300

Query: 402 SSCS 405
              S
Sbjct: 301 GGYS 304


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 186/495 (37%), Positives = 282/495 (56%), Gaps = 11/495 (2%)

Query: 64  TQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDY 123
           T       ++ A  LFD  P  D+  +  M  GY +++    A  LF  +       ++ 
Sbjct: 253 TGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPER----NEV 308

Query: 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFE 183
           S+ ++L     V  E +E  K+L      +    N+    T+I  YA+C  +  A+ +F+
Sbjct: 309 SWNAML--AGYVQGERVEMAKEL----FDVMPCRNVSTWNTMITGYAQCGKISEAKNLFD 362

Query: 184 NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243
            + +   VS+ A+I  Y++S    EAL LF  ++    +    +  SALS+CA + +L+L
Sbjct: 363 KMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALEL 422

Query: 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303
           GK +H  + K G +    V  AL+ M+ KCG +++A  +F  M+GKD  +W+ MI  Y+ 
Sbjct: 423 GKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSR 482

Query: 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK 363
           HG G +++  FE M +  + PD+ T + +L ACSHTGLVD+G  YF++M   YG+ P  +
Sbjct: 483 HGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQ 542

Query: 364 HYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
           HY CMVDLLGRAG L+EA+  +  +P +    +W TLL +   H N  LA+   ++IF +
Sbjct: 543 HYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAM 602

Query: 424 DDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGV 483
           +  + G YV+LSNL A +GRW DV  LR  M+D+GV KVPG S IE+ N    F  GD  
Sbjct: 603 EPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEF 662

Query: 484 HSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNT 543
           H    ++   L++L   +K  GYV  TS+V H D+E+EEKE  +RYHSE+LA+ +G++  
Sbjct: 663 HPEKDEIFAFLEDLDLRMKKAGYVSKTSVVLH-DVEEEEKERMVRYHSERLAVAYGIMRV 721

Query: 544 PPGTTIRVVKNLRVC 558
             G  IRV+KNLRVC
Sbjct: 722 SSGRPIRVIKNLRVC 736



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/357 (21%), Positives = 160/357 (44%), Gaps = 36/357 (10%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           ++ A  +FDR+PE + V +N +   Y ++     A  LF    N  L+  +      +K 
Sbjct: 168 VDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKK 227

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
              V A    +  ++           ++    T+I  YA+  +++ AR++F+      V 
Sbjct: 228 KKIVEARQFFDSMKVR----------DVVSWNTIITGYAQNGEIDEARQLFDESPVHDVF 277

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           ++ A+++ Y ++    EA  LF  + ERN    +V+  + L+       +++ K + + +
Sbjct: 278 TWTAMVSGYIQNRMVEEARELFDRMPERN----EVSWNAMLAGYVQGERVEMAKELFDVM 333

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
                 + V     +I  +A+CG++ +A ++FD M  +D  +W+AMI  Y+  G  ++++
Sbjct: 334 PC----RNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEAL 389

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG-IVPGIKHYGCMVD 370
            +F  M +     +  +F   L  C+    ++ G       +  +G +V G    GC V 
Sbjct: 390 RLFVLMEREGGRLNRSSFSSALSTCADVVALELG-------KQLHGRLVKGGYETGCFVG 442

Query: 371 -----LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
                +  + G ++EA     E+  K   + W T+++  S H   G  ++ + R FE
Sbjct: 443 NALLLMYCKCGSIEEANDLFKEMAGKDI-VSWNTMIAGYSRH---GFGEEAL-RFFE 494



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 162/368 (44%), Gaps = 46/368 (12%)

Query: 69  TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSL 128
           T     A  +F R+P    V +N M  GY R+     A  LF E+    L+    S+  +
Sbjct: 72  TGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDLV----SWNVM 127

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP 188
           +K    V    L + ++L     +     ++    T+++ YA+   V+ ARR+F+ + E 
Sbjct: 128 IK--GYVRNRNLGKAREL----FERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEK 181

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI- 247
             VS+NA+++AY ++S+  EA  LF   +   L          +S   LLG     K I 
Sbjct: 182 NDVSWNALLSAYVQNSKLEEACVLFGSRENWAL----------VSWNCLLGGFVKKKKIV 231

Query: 248 --HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
              ++     +   V  NT +I  +A+ G +D+A  +FD     D   W+AM+  Y  + 
Sbjct: 232 EARQFFDSMKVRDVVSWNT-IITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNR 290

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP--GIK 363
              ++  +F+ M +     +E+++  +L        V+         ++ + ++P   + 
Sbjct: 291 MVEEARELFDRMPE----RNEVSWNAMLAGYVQGERVEMA-------KELFDVMPCRNVS 339

Query: 364 HYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS--SCSSHNNLGLAKQVIERIF 421
            +  M+    + G++ EA    D++P K  P+ W  +++  S S H+   L      R+F
Sbjct: 340 TWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAGYSQSGHSYEAL------RLF 392

Query: 422 ELDDSHGG 429
            L +  GG
Sbjct: 393 VLMEREGG 400



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 123/270 (45%), Gaps = 18/270 (6%)

Query: 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRE 215
           +S++      I+ Y        A R+F+ +     VSYNA+I+ Y R+     A  LF E
Sbjct: 56  DSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDE 115

Query: 216 LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275
           + ER+L   +V +         + + +LGK   E  ++         NT ++  +A+ G 
Sbjct: 116 MPERDLVSWNVMIK------GYVRNRNLGK-ARELFERMPERDVCSWNT-ILSGYAQNGC 167

Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           +DDA  VFD M  K+  +W+A++ AY  + +  ++ ++F       +    +++  LL  
Sbjct: 168 VDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWAL----VSWNCLLGG 223

Query: 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
                 + E   +F SM+     V  +  +  ++    + G +DEA +  DE P+     
Sbjct: 224 FVKKKKIVEARQFFDSMK-----VRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDV-F 277

Query: 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
            W  ++S    +  +  A+++ +R+ E ++
Sbjct: 278 TWTAMVSGYIQNRMVEEARELFDRMPERNE 307



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 13/182 (7%)

Query: 23  NALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLI-NFCTQNPTTSSMEHAHLLFDR 81
           +ALS      +    KQ+H   +K   +    V   L+  +C       S+E A+ LF  
Sbjct: 409 SALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCK----CGSIEEANDLFKE 464

Query: 82  IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
           +   DIV +NTM  GYSR      A+  F  +   GL PDD +  ++L AC+  G   ++
Sbjct: 465 MAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTG--LVD 522

Query: 142 EGKQ-LHCFAIKLGL--NSNLYVCTTLINLYAECSDVEAARRIFENIS-EPCVVSYNAII 197
           +G+Q  H      G+  NS  Y C  +++L      +E A  + +N+  EP    +  ++
Sbjct: 523 KGRQYFHTMTQDYGVRPNSQHYAC--MVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLL 580

Query: 198 TA 199
            A
Sbjct: 581 GA 582


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 201/578 (34%), Positives = 310/578 (53%), Gaps = 49/578 (8%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHL--QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           L LLP   +     Q     I  HL     L   +   +F     ++S + +A LL  + 
Sbjct: 16  LLLLPSLVAASSQSQFRLREIHAHLLVSGRLASPSHHADFVASLASSSHLSYARLLLPQR 75

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           P   ++  N + R  +R   P  A   F EL    L PD YSF  L++A   + A A   
Sbjct: 76  P-ATLLAHNGLLRALARGPCPGLAFAAFREL---PLAPDHYSFTFLVRAATSLAAAASAT 131

Query: 143 -----------GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP--- 188
                         +H  A + G  ++ +V +  +++YA   DV A R  F  I  P   
Sbjct: 132 PVPTDVAVNLLAGSVHAAAFQHGHATDPHVQSGAVSMYAAVGDVGAVRAAFAEIVSPDVV 191

Query: 189 CV----------------------------VSYNAIITAYARSSRPNEALSLFRELQERN 220
           CV                            V++NA++T Y R  R  EAL LF E+Q+  
Sbjct: 192 CVTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAG 251

Query: 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV 280
           +  ++VT++S L++CA +G+L+ G W+H Y+   G+   V + TAL+DM++KCG +  ++
Sbjct: 252 VAVSEVTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSM 311

Query: 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG 340
            VF+ M  ++   W++ +   A +G G + + +F+ M  A + P+ +TF+ +L  CS  G
Sbjct: 312 EVFETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAG 371

Query: 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400
           LV+EG   F SM+DK+ + P ++HYGCMVDL GRAGRLD+A  FI+ +P++    +W  L
Sbjct: 372 LVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGAL 431

Query: 401 LSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460
           L++   HNN+ L K  + ++ E++  +   +V+LSN+ A +  W+ V  +R +MK +GV 
Sbjct: 432 LNASRIHNNVDLGKHAMHKLTEIESKNDAAHVLLSNIYAESHNWKGVSKVRNMMKSKGVK 491

Query: 461 KVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMED 520
           K+PGCS+IEV+  V EFF G   H    D+Q  L E+   L++ GY  +T  V   D+E+
Sbjct: 492 KMPGCSAIEVDGKVHEFFVGSKSHPRYKDIQTMLAEMSHRLRLQGYAANTKEVLF-DIEE 550

Query: 521 EEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           EEKE A+  HSEKLA+ FGL+  P  T IR+VKNLRVC
Sbjct: 551 EEKEGAISLHSEKLALAFGLITLPEDTVIRIVKNLRVC 588


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  340 bits (873), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 182/537 (33%), Positives = 310/537 (57%), Gaps = 10/537 (1%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           ++L  C +   +   KQ+HA  +K    ++  V   L+   ++      ME A ++F+ +
Sbjct: 219 TMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSK---CGMMEEAEIVFESL 275

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
            + +I+ +     G+ +     +A+  F  +  SG+ P++++F  +L +C CV  +   +
Sbjct: 276 RQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCV--KDFID 333

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV-VSYNAIITAYA 201
           G+  H   IK G+ S ++V T +I++Y+   +++ A + F+ +      VS+NA+I  Y 
Sbjct: 334 GRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYV 393

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
            + +  +A+  F  + + ++   + T  +   +C+   SL     IH  + K  ++  + 
Sbjct: 394 LNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVESNLH 453

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V ++LI+ + +CG L++AV VF  +S  D  +W+++I AY+ +G   K+I +  +M++  
Sbjct: 454 VASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEG 513

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
             P   TFL +L ACSH+GLV EG  +F SM   Y I P   H  CMVD+LGRAG+L+ A
Sbjct: 514 NKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENA 573

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
             FI +L +K T  +WR LL++C  ++NL +A+ V E+I +L+ +    YV LSN+ A  
Sbjct: 574 LDFIKKLTMKPTASIWRPLLAACRYNSNLQMAEYVAEKILDLEPNDATVYVTLSNMYAEV 633

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           GRW D +  R+LM+ + + K PGCS IEVNN + +FFS D  H     + + L +LV+++
Sbjct: 634 GRWADAENQRRLMEQKEISKEPGCSWIEVNNKMYKFFSHDKAHPEMPKVYEKLKQLVRQI 693

Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           + +GY P T+ V H +    ++++ L YHSEKLA+ FGLL+ PPG  IRV+KNLRVC
Sbjct: 694 QDIGYSPPTTTVLHPESRQPKEQLIL-YHSEKLAVCFGLLSLPPGKPIRVLKNLRVC 749



 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 145/448 (32%), Positives = 241/448 (53%), Gaps = 36/448 (8%)

Query: 22   PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
            P+ L      +  R  + +H V +K   ++D  +++ LI   ++      +E A  +FD 
Sbjct: 908  PSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSK---CGHVEKACRVFDW 964

Query: 82   IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
            I + D+V+ N M  GY++      A+ L  ++  +G+ P+  S+ +L+   + VG +++ 
Sbjct: 965  IVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMV 1024

Query: 142  EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
                                              E  R +  N  EP VVS+ ++I+ + 
Sbjct: 1025 S---------------------------------EVFRLMTANGVEPDVVSWTSVISGFV 1051

Query: 202  RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
            ++   +E    F+E+ ++   P+ VT+ S L +C  + +L  GK IH Y    G++K V 
Sbjct: 1052 QNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVY 1111

Query: 262  VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
            V +AL+DM+AKCG + +A  +F  M  ++T  W+++I  YA HG  +++I +F +M ++ 
Sbjct: 1112 VRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESD 1171

Query: 322  VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
               D +TF  +L ACSH G+V+ G + F  M++KY I P ++HY CMVDLLGRAG+L EA
Sbjct: 1172 TKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEA 1231

Query: 382  YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
            Y  I  +P++    +W  LL +C +H N+ LA+   E +FEL+    G  ++LSNL A A
Sbjct: 1232 YDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPGSSLLLSNLYADA 1291

Query: 442  GRWEDVDYLRKLMKDRGVLKVPGCSSIE 469
            GRW +   ++K+MK R   K PGCS IE
Sbjct: 1292 GRWGNAAKMKKMMKQRKFGKFPGCSWIE 1319



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 170/328 (51%), Gaps = 11/328 (3%)

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           ++R++TP       VE    G  P      S L  C   G   +E G++ HCF +K+GL 
Sbjct: 96  FTRNETP------HVEF--GGGFPHRQYVFSALSFCGREGC--VELGRRWHCFVVKIGLG 145

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
           S+ +VCT+LI++YA+C +V++A R+++ ++     + N +I+AYAR+    +A  +F ++
Sbjct: 146 SDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQI 205

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
                +P   T  + L+ C  + ++  GK +H ++ K        V  AL+ +++KCG +
Sbjct: 206 GNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMM 265

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           ++A  VF+++  ++  +W+A I  +  HG   K++  F  M ++ + P+E TF  +L +C
Sbjct: 266 EEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASC 325

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
                  +G   F++   K G+  G+     ++D+    G +DEA +   ++   ++ + 
Sbjct: 326 GCVKDFIDG-RMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVS 384

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELD 424
           W  L++    +  +  A +   R+ + D
Sbjct: 385 WNALIAGYVLNEKIEKAMEAFCRMVKED 412



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 159/316 (50%), Gaps = 6/316 (1%)

Query: 23  NALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           +ALS   R       ++ H   +K  L +D  V T LI+   +      ++ A  ++D++
Sbjct: 118 SALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAK---CGEVDSAVRVYDKM 174

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
              D    N +   Y+R+   ++A  +F+++ N G  P+ Y++ ++L  C  +   A++E
Sbjct: 175 TSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTI--SAIQE 232

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
           GKQLH   +K+   S   V   L+ LY++C  +E A  +FE++ +  ++S+ A I  + +
Sbjct: 233 GKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQ 292

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
                +AL  F  ++E  ++P + T    L+SC  +     G+  H  + K G+   V V
Sbjct: 293 HGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFV 352

Query: 263 NTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
            TA+IDM++  G +D+A   F  M       +W+A+I  Y  + +  K++  F  M+K  
Sbjct: 353 GTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKED 412

Query: 322 VSPDEITFLGLLYACS 337
           V+ +E T+  +  ACS
Sbjct: 413 VACNEFTYSNIFKACS 428



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 97/429 (22%), Positives = 192/429 (44%), Gaps = 48/429 (11%)

Query: 34   FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM 93
            +RG + +HA  +   L        KL++F T+      + +A  LFD+IP  +I  +  +
Sbjct: 820  YRG-RALHAHLVIIGLARLTYFAAKLMSFYTE---CGQLSNARKLFDKIPNTNIRRWIVL 875

Query: 94   ARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL 153
                +R      A+  F E+   GL P+ +  PS+LKAC  +       G+ +H   +K 
Sbjct: 876  TGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDR--RTGENMHTVILKN 933

Query: 154  GLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLF 213
               S+ Y+ + LI +Y++C  VE A R+F+ I +  +V  NA+++ YA+    +EAL L 
Sbjct: 934  SFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLV 993

Query: 214  RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273
            +++Q+  +KP  V+  + ++  + +G   +   +   +   G++                
Sbjct: 994  QKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVE---------------- 1037

Query: 274  GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
                            D  +W+++I  +  +   H+    F+EM+     P  +T   LL
Sbjct: 1038 ---------------PDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLL 1082

Query: 334  YACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
             AC++   +  G   + Y+M    G+   +     +VD+  + G + EA      +P ++
Sbjct: 1083 PACTNVANLRHGKEIHGYAM--VIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERN 1140

Query: 393  TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG----DYVILSNLCARAGRWEDVD 448
            T + W +L+   ++H   G   + IE   ++++S        +  + N C+ AG  E  +
Sbjct: 1141 T-VTWNSLIFGYANH---GYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGE 1196

Query: 449  YLRKLMKDR 457
             L   M+++
Sbjct: 1197 SLFXKMQEK 1205



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 136/284 (47%), Gaps = 10/284 (3%)

Query: 139  ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
            AL  G+ LH   + +GL    Y    L++ Y EC  +  AR++F+ I    +  +  +  
Sbjct: 818  ALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTG 877

Query: 199  AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
            A AR     EALS F E+Q+  L+P    + S L +C  L     G+ +H  I K   + 
Sbjct: 878  ACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFES 937

Query: 259  YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
               + +ALI M++KCG ++ A  VFD +  KD    +AM+  YA HG  H+++ + ++M 
Sbjct: 938  DAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQ 997

Query: 319  KAQVSPDEITFLGLLYACSHTG---LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
            +A V P+ +++  L+   S  G   +V E     + +    G+ P +  +  ++    + 
Sbjct: 998  QAGVKPNVVSWNTLIAGFSQVGDKSMVSE----VFRLMTANGVEPDVVSWTSVISGFVQN 1053

Query: 376  GRLDEAYRFIDELPIKS---TPILWRTLLSSCSSHNNLGLAKQV 416
                E +    E+  +    + +   +LL +C++  NL   K++
Sbjct: 1054 FHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEI 1097



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 122/286 (42%), Gaps = 22/286 (7%)

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
           P    + SALS C   G ++LG+  H ++ K GL     V T+LIDM+AKCG +D AV V
Sbjct: 111 PHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRV 170

Query: 283 FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342
           +D M+  D    + +I AYA +G   ++  +F ++      P+  T+  +L  C     +
Sbjct: 171 YDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAI 230

Query: 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
            EG    ++   K   +        ++ L  + G ++EA    + L  ++  I W   ++
Sbjct: 231 QEG-KQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNI-ISWTASIN 288

Query: 403 SCSSHNNLGLAKQVIERIFELD---DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459
               H +   A +    + E     +      V+ S  C +       D++   M    V
Sbjct: 289 GFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVK-------DFIDGRMFHTQV 341

Query: 460 LKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVG 505
           +K    S + V   + + +SG G           +DE  K+ K +G
Sbjct: 342 IKKGMASGVFVGTAIIDMYSGLG----------EMDEAEKQFKQMG 377



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/202 (19%), Positives = 88/202 (43%), Gaps = 2/202 (0%)

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
           R  + +  T   A+   A   +L  G+ +H ++   GL +       L+  + +CG+L +
Sbjct: 797 RTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSN 856

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
           A  +FD +   + + W  +  A A  G   +++  F EM K  + P++     +L AC H
Sbjct: 857 ARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGH 916

Query: 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWR 398
                 G N  +++  K            ++ +  + G +++A R  D +  K   ++  
Sbjct: 917 LSDRRTGEN-MHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVM-N 974

Query: 399 TLLSSCSSHNNLGLAKQVIERI 420
            ++S  + H  +  A  +++++
Sbjct: 975 AMVSGYAQHGFVHEALBLVQKM 996



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 6/129 (4%)

Query: 17   LCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSME 73
             C ++    SLLP CT+   L   K+IH   +   ++ D+ V + L++   +      + 
Sbjct: 1071 FCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAK---CGYIS 1127

Query: 74   HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
             A +LF  +PE + V +N++  GY+       AI LF ++  S    D  +F ++L AC+
Sbjct: 1128 EAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACS 1187

Query: 134  CVGAEALEE 142
              G   L E
Sbjct: 1188 HAGMVELGE 1196


>gi|358345892|ref|XP_003637008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502943|gb|AES84146.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 195/525 (37%), Positives = 299/525 (56%), Gaps = 37/525 (7%)

Query: 51  NDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP----DIVLFNTMARGYSRSKTPIRA 106
            D+     ++   +QN      E A  LF ++ E     D+V ++++  GY++      A
Sbjct: 103 KDVVTWNAMVTGYSQN---GRFEDALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEA 159

Query: 107 IFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS-------NL 159
           + +F ++      P+  +  SLL ACA VGA  L  GK+ HC+++K  L         +L
Sbjct: 160 MDVFRQMCGCRCRPNVVTLMSLLSACASVGA--LLHGKETHCYSVKFILKGEHNDDTDDL 217

Query: 160 YVCTTLINLYAECSDVEAARRIFENI--SEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            V   LI++YA+C  +E AR +F+ I   +  VV++  +I  YA+    N AL LF E+ 
Sbjct: 218 AVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMF 277

Query: 218 ERN--LKPTDVTMLSALSSCALLGSLDLGKWIHEYI-KKYGLDKYVK-VNTALIDMHAKC 273
           + +  + P D T+   L +CA L +L  GK IH Y+ ++  +D  V  V   LIDM++K 
Sbjct: 278 KIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKS 337

Query: 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
           G +D A  VFD+MS ++  +W++++  Y  HG              A +  D ITFL +L
Sbjct: 338 GDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHG--------------AALVLDGITFLVVL 383

Query: 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST 393
           YACSH+G+VD G + FY M   + + PG++HY CM DL GRAGRL EA R I+++ ++ T
Sbjct: 384 YACSHSGMVDRGIDLFYRMSKDFVVDPGVEHYACMADLFGRAGRLCEATRLINDMSMEPT 443

Query: 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKL 453
           P++W  LLS+C +H+N  LA+   +++ EL   + G Y +LSN+ A A RW+DV  +R L
Sbjct: 444 PVVWIALLSACRTHSNEELAEFAAKKLLELKADNDGTYTLLSNIYANARRWKDVARIRYL 503

Query: 454 MKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLV 513
           MK  G+ K PG S ++    +  F+ GD  H  S  + + L +L+K +K +GYVP T+  
Sbjct: 504 MKRTGIKKRPGWSWVKGRKGMETFYVGDRTHLQSQKIYETLADLIKRIKAIGYVPQTNFS 563

Query: 514 HHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            H D++DEEK   L  HSEKLA+ + +L  PPG  IR+ KNLR+C
Sbjct: 564 LH-DVDDEEKGDQLLEHSEKLALAYAILTLPPGAPIRITKNLRIC 607



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 178/394 (45%), Gaps = 80/394 (20%)

Query: 66  NP--TTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVEL-LNSGLLPDD 122
           NP  TTSS  H    + R P    V +N++   YS    P  A+FLF E+ +  G+LPD 
Sbjct: 5   NPSKTTSSTIH----YTRSPLIS-VSWNSIVSVYSHCFVPNDAVFLFREMTVGYGILPDT 59

Query: 123 YSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF 182
               ++L     +G                       +V   L+++YA+C  +E A ++F
Sbjct: 60  VGVVNILPVSGFLG----------------------FFVGNALVDMYAKCGKMEDASKVF 97

Query: 183 ENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNL--------------------- 221
           E +    VV++NA++T Y+++ R  +ALSLF +++E  +                     
Sbjct: 98  ERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIELDVVTWSSVISGYAQRGFGC 157

Query: 222 --------------KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL--------DKY 259
                         +P  VT++S LS+CA +G+L  GK  H Y  K+ L        D  
Sbjct: 158 EAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDL 217

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA--WSAMIVAYATHGQGHKSILMFEEM 317
             +N ALIDM+AKC  L+ A ++FD +  KD     W+ MI  YA HG  + ++ +F EM
Sbjct: 218 AVIN-ALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEM 276

Query: 318 MKAQ--VSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGR 374
            K    + P++ T   +L AC+    +  G   + Y +R        +    C++D+  +
Sbjct: 277 FKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSK 336

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408
           +G +D A    D +  K   + W +LL+    H 
Sbjct: 337 SGDVDTAQVVFDSMS-KRNAVSWTSLLTGYGMHG 369



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 137/329 (41%), Gaps = 77/329 (23%)

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQ-ERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           VS+N+I++ Y+    PN+A+ LFRE+     + P  V +++ L     LG          
Sbjct: 24  VSWNSIVSVYSHCFVPNDAVFLFREMTVGYGILPDTVGVVNILPVSGFLGFF-------- 75

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ--- 306
                       V  AL+DM+AKCG+++DA  VF+ M  KD   W+AM+  Y+ +G+   
Sbjct: 76  ------------VGNALVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFED 123

Query: 307 --------------------------------GHKSILMFEEMMKAQVSPDEITFLGLLY 334
                                           G +++ +F +M   +  P+ +T + LL 
Sbjct: 124 ALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLS 183

Query: 335 ACSHTGLVDEG-WNYFYSMRDKYGIVPG--------IKHYGCMVDLLGRAGRLDEAYRFI 385
           AC+  G +  G   + YS++    I+ G        +     ++D+  +   L+ A    
Sbjct: 184 ACASVGALLHGKETHCYSVK---FILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMF 240

Query: 386 DEL-PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS-HGGDYVILSNL--CARA 441
           DE+ P     + W  ++   + H +   A Q+   +F++D+     D+ I   L  CAR 
Sbjct: 241 DEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARL 300

Query: 442 -----GRWEDVDYLRKLMKDRGVLKVPGC 465
                G+      LR+   D  VL V  C
Sbjct: 301 AALKFGKQIHAYVLRRSRIDSDVLFVANC 329


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 175/475 (36%), Positives = 282/475 (59%), Gaps = 8/475 (1%)

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
           D+  + ++  GY+++  P  A+ L + +L     P+ ++F SLLKA     +  +  G+Q
Sbjct: 5   DMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGI--GEQ 62

Query: 146 LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSR 205
           +H   +K   + ++YV + L+++YA C  ++ A  +F+ +     VS+NA+I  +AR   
Sbjct: 63  IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 122

Query: 206 PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTA 265
               L +F E+Q    + T  T  S  S+ A +G+L+ GKW+H ++ K G      V   
Sbjct: 123 GETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNT 182

Query: 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
           ++DM+AK G + DA  VFD++  KD   W++M+ A+A +G G +++  FEEM K  V  +
Sbjct: 183 ILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLN 242

Query: 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI 385
           +ITFL +L ACSH GLV EG  YF  M++ + + P I HY  +VDLLGRAG L++A  FI
Sbjct: 243 QITFLSILTACSHGGLVKEGKQYFDMMKE-HNLEPEIDHYVTVVDLLGRAGLLNDALVFI 301

Query: 386 DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWE 445
            ++P+K T  +W  LL SC  H N  + +   + +FELD    G  V+L N+ A  G+W+
Sbjct: 302 FKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWD 361

Query: 446 DVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVG 505
               +RK+MK  GV K P CS +E+ N V  F + D  H  S ++ K  +E+  +++  G
Sbjct: 362 AAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAG 421

Query: 506 YVPDTS--LVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           YVP+T   L+H   ++++E++  L+YHSEK+A+ F L+N P G TIR++KN+R+C
Sbjct: 422 YVPNTDYVLLH---VDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRIC 473



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 158/298 (53%), Gaps = 8/298 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +QIHA+T+K    +D+ V + L++   +      M+ A  +FD++   + V +N +  G+
Sbjct: 61  EQIHALTVKYDWHDDVYVGSALLDMYAR---CGRMDMAIAVFDQLESKNGVSWNALIAGF 117

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           +R       + +F E+  +G     +++ S+  A A +G  ALE+GK +H   IK G   
Sbjct: 118 ARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIG--ALEQGKWVHAHMIKSGERL 175

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           + +V  T++++YA+   +  AR++F+++ +  +V++N+++TA+A+     EA++ F E++
Sbjct: 176 SAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMR 235

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           +  +    +T LS L++C+  G +  GK   + +K++ L+  +     ++D+  + G L+
Sbjct: 236 KCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEHNLEPEIDHYVTVVDLLGRAGLLN 295

Query: 278 DAVSVFDNMSGKDTQA-WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
           DA+     M  K T A W A++ +   H      I  F      ++ PD+     LLY
Sbjct: 296 DALVFIFKMPMKPTAAVWGALLGSCRMHKNA--KIGQFAADHVFELDPDDTGPPVLLY 351


>gi|413938369|gb|AFW72920.1| hypothetical protein ZEAMMB73_491813 [Zea mays]
          Length = 625

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 191/527 (36%), Positives = 301/527 (57%), Gaps = 9/527 (1%)

Query: 37  LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           ++++HA  IK  L         L+  C  +     ME A  +F+ + EP+   +NT+ RG
Sbjct: 61  VRKVHARHIKLGLDRCPRYARPLLAACAVSGWPGGMELAASIFESLVEPEAFDYNTLMRG 120

Query: 97  Y----SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
           +       + P  A+ L+++ L +G+ PD Y+FP +LKACA + A  L+EG+QL    +K
Sbjct: 121 HVSGGGGDRDPAAALRLYIDGLEAGVSPDSYTFPFVLKACAQLAA--LQEGRQLQAHIVK 178

Query: 153 LGLNSNLYVCTTLINLYAECSDVEAARRIFENIS--EPCVVSYNAIITAYARSSRPNEAL 210
           LG   + +V  +LI+ Y +C     AR  F+ +   E   VS++A++ AY ++    E L
Sbjct: 179 LGFQHDEHVQNSLISFYGKCGAPAMARLAFDRVEAEERTTVSWSALLAAYTKAGLWGECL 238

Query: 211 SLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270
           + F  +     +P + +M+SALS+CA LGS D G+ +H  + +        + T+L+DM+
Sbjct: 239 ASFGSMMLDGWRPDESSMVSALSACAHLGSFDAGRSVHCALLRNTARLNTIMLTSLLDMY 298

Query: 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           AKCG ++ A + FD M  K   A+SAM+   A HG G K++ +F+ M++   +PD   ++
Sbjct: 299 AKCGSIEKAAAAFDAMDDKSAWAYSAMLSGLALHGDGRKALQVFDAMVREGHAPDAAAYV 358

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
           G+L ACS  GL+++G   F  MR ++ + P   HYGCMVDL+ RAGRLD+A   I  +P 
Sbjct: 359 GVLNACSRAGLLEDGLRCFDRMRLEHKVAPNALHYGCMVDLMARAGRLDDARALIGTMPT 418

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL 450
             T   WR+LL++C  H +L LA   ++ +  L  ++ GDYVI++++ ARA  W     L
Sbjct: 419 GPTDTAWRSLLNACRIHGDLDLAWHALQELRRLGAANAGDYVIVADMHARAKNWTAAAAL 478

Query: 451 RKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT 510
           R    D G+ +  G S++EV   +  F S D  H  + D+ + L ++  +L+  GY PDT
Sbjct: 479 RTEAVDSGLAQSLGFSAVEVRGELHRFVSQDMAHPRTRDIYEMLHQMEWQLRFDGYKPDT 538

Query: 511 SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRV 557
           S V   D  +EEK   +  HS+KLA+ FGLL+TP G  +RVV NLR+
Sbjct: 539 SEVAL-DAGEEEKGRVVAAHSQKLAMAFGLLSTPEGAPVRVVTNLRM 584


>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
          Length = 768

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 197/517 (38%), Positives = 278/517 (53%), Gaps = 39/517 (7%)

Query: 20  NTPNALSLLPRCTSFRGLKQIH--AVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHL 77
           NT     LL +C S   LKQIH  AVT+        ++  KL+N  TQ     S   A  
Sbjct: 253 NTQTFYFLLQKCGSLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQ---LGSPVDAQK 309

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           +F+ I  PDIV +  +   Y  +  P +A  +F  L +SGL PD +     + AC     
Sbjct: 310 VFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACG--HR 367

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA--------------------------- 170
           + L  G+ +H    +  L S+  V   LI++Y+                           
Sbjct: 368 KDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLL 427

Query: 171 ----ECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ-ERNLKPTD 225
               +C+D+EAARRIF+ +     VS+ A+IT Y +   P   L LF+E++ E    PT 
Sbjct: 428 NGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTV 487

Query: 226 VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285
           +T+++ LS CA +G+ DLG  +H Y+ K  LD  V VN AL+DM+AK G L  A+ +F  
Sbjct: 488 ITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQE 547

Query: 286 MSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345
           M  +D  +W+ MI   A HG+G  ++  F +M K+   P+E+T L +L ACSH GLV EG
Sbjct: 548 MPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSACSHAGLVVEG 607

Query: 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCS 405
            + F  M   +GI P I+HYGCMVDLLGRAG L EA   I+ +PIK   ++WR+LLS+C 
Sbjct: 608 RSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACL 667

Query: 406 SHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGC 465
            H NL LA+   + I EL+    G Y++L N+   A RWED    RK M+DR V K PGC
Sbjct: 668 VHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGC 727

Query: 466 SSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           S +EVN VV EF + D VH    D+   L+ + +++K
Sbjct: 728 SWVEVNGVVHEFLAEDAVHCIRADVYTVLEAITEQMK 764



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 164/371 (44%), Gaps = 48/371 (12%)

Query: 110 FVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL--NSNLYVCTTLIN 167
           F    N     +  +F  LL+ C      +LE+ KQ+H  A+ LGL  +   ++   L+N
Sbjct: 242 FASYTNRNAHMNTQTFYFLLQKCG-----SLEKLKQIHGKAVTLGLLCSKRQHLACKLLN 296

Query: 168 LYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT 227
            Y +      A+++F +I  P +VS+  +I+ Y  +S+P +A S+F  L    L+P    
Sbjct: 297 TYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFC 356

Query: 228 MLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS 287
           ++ A+S+C     L  G+ +H  + ++ L     V  ALIDM+++ G ++ A SVF  M 
Sbjct: 357 VVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTME 416

Query: 288 GKDTQAWSAMIVAYATHGQGHKSILMFEEM-MKAQVS----------------------- 323
            KD  +W++++  +        +  +F+EM M+  VS                       
Sbjct: 417 IKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQE 476

Query: 324 --------PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
                   P  IT + +L  C+  G  D G +  +   +K  +   +     ++D+  ++
Sbjct: 477 MRAEGKDWPTVITIVAVLSGCADIGAFDLG-SSVHGYVNKTNLDLDVTVNNALMDMYAKS 535

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG--GDYVI 433
           G L  A +   E+P K     W T++S  + H   G     +E   ++  S     +  +
Sbjct: 536 GALVLALKIFQEMP-KRDVFSWTTMISGLALH---GKGTHALEAFSDMSKSGXXPNEVTL 591

Query: 434 LSNL--CARAG 442
           LS L  C+ AG
Sbjct: 592 LSVLSACSHAG 602


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 196/553 (35%), Positives = 308/553 (55%), Gaps = 36/553 (6%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K++HA  IK+ L +       LI+   +      ++ A  LFD +P+ D V + T+    
Sbjct: 28  KKLHAQIIKSGLNHHHPFPKTLIDAYGK---CGLLKDALKLFDALPQQDHVAWATVLSAC 84

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           + S  P +A  + + +L+ GL PD + F SL+KACA +G+  ++ GKQLH   +      
Sbjct: 85  NLSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFE 144

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           +  V ++L+++YA+    +  R +F++I E   +S+ A+I+ YARS R  EAL LFRE  
Sbjct: 145 DDVVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESP 204

Query: 218 ERNL--------------KPTDVTML------------------SALSSCALLGSLDLGK 245
            +NL                 D   L                  S + +CA     +LGK
Sbjct: 205 FKNLYAWTALISGLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGK 264

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
            +H  +   G +  + ++ AL+DM+AKC  +  A  +F  M  KD  +W+++IV  A HG
Sbjct: 265 QVHCVVITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHG 324

Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY 365
              +++ ++++M+ A V P+E+TF+GL+YACSH GLV +G   F SM + +GI P ++HY
Sbjct: 325 LAEEALTLYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHY 384

Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
            C++DL  R+G LDEA   I  +P+K     W  LLS+C  H N  +A ++ + + +L  
Sbjct: 385 TCLLDLFSRSGHLDEAENLIRTMPVKPDEPTWAALLSACKHHGNTKMAVRIADHLLDLKP 444

Query: 426 SHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHS 485
                Y++LSN+ A AG WE+V  +RKLM  + V KVPG S +++    + F +G+    
Sbjct: 445 EDPSSYILLSNIYAGAGMWENVSMVRKLMAVKEVKKVPGYSCVDLGREFQVFHAGEASQP 504

Query: 486 YSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPP 545
              ++   + +L  E++  GYVPDTS V   DM+ +EKE  L +HSE+LA+ +GLL   P
Sbjct: 505 MKDEILGLMTKLDSEMRRRGYVPDTSSVLL-DMDQQEKERQLFWHSERLALAYGLLKAVP 563

Query: 546 GTTIRVVKNLRVC 558
           GTTIR+VKNLRVC
Sbjct: 564 GTTIRIVKNLRVC 576



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 51/100 (51%)

Query: 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYA 302
           + K +H  I K GL+ +      LID + KCG L DA+ +FD +  +D  AW+ ++ A  
Sbjct: 26  IAKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACN 85

Query: 303 THGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342
                HK+  +   ++   + PD   F  L+ AC++ G V
Sbjct: 86  LSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSV 125


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 190/542 (35%), Positives = 309/542 (57%), Gaps = 9/542 (1%)

Query: 20  NTPNALSLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76
           N    +SLL   T+  GL++   IH +  +  L +   +   L+N   +     S + A 
Sbjct: 361 NRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGR---CESPDDAR 417

Query: 77  LLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136
            +FD++  P+++ +N+M   Y + +    A+ LF  +   G+ PD  +F ++L AC  +G
Sbjct: 418 TVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACT-IG 476

Query: 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196
           +      K +H    + GL  +  V T+L+N+YA+  +++ A  I + + E  + ++N +
Sbjct: 477 SHGRTR-KLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVL 535

Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256
           I  YA   R  EAL  +++LQ   +    VT +S L++C    SL  GK IH    + GL
Sbjct: 536 INGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGL 595

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
           D  V V  AL +M++KCG +++A  +FD+M  +   +W+ M+ AYA HG+  + + +  +
Sbjct: 596 DSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRK 655

Query: 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376
           M +  V  + ITF+ +L +CSH GL+ EG  YF+S+    GI    +HYGC+VDLLGRAG
Sbjct: 656 MEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAG 715

Query: 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSN 436
           +L EA ++I ++P++   + W +LL +C    +L   K    ++ ELD  +    V+LSN
Sbjct: 716 KLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSN 775

Query: 437 LCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDE 496
           + +  G W++   LR+ M  R V KVPG SSI+V N V EF   D  H  + ++   ++E
Sbjct: 776 IYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEE 835

Query: 497 LVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLR 556
           L   ++  GYVPDT +V H D+++E+KE  L YHSEKLAI FGL++TP  +++ + KNLR
Sbjct: 836 LCFAMREAGYVPDTKMVLH-DVDEEQKESLLAYHSEKLAIAFGLISTPETSSLHIFKNLR 894

Query: 557 VC 558
           VC
Sbjct: 895 VC 896



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 204/398 (51%), Gaps = 17/398 (4%)

Query: 22  PNALSL---LPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PNA++L   L  C SFR L+    +HA++++     +  V T L+N   +  T   +  A
Sbjct: 56  PNAITLVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGT---LLDA 112

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIR-AIFLFVELLNSGLLPDDYSFPSLLKACAC 134
             +F+ + E ++V +N M   YS      + A+ LF  +L  G+  +  +F ++L +   
Sbjct: 113 QSVFEEMAEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSV-- 170

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           V  +AL +GK +H    +   + +++V T L+N Y +C  +  AR++F+ +    V ++N
Sbjct: 171 VDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWN 230

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           ++I+AY+ S R  EA  +F+ +Q+   +   VT LS L +C    +L  GK + E I + 
Sbjct: 231 SMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISET 290

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
             +  + V TALI M+A+C   +DA  VF  M   +   WSA+I A+A HG   +++  F
Sbjct: 291 SFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYF 350

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
             M +  + P+ +TF+ LL   +    ++E  +  + +  ++G+         +V++ GR
Sbjct: 351 RMMQQEGILPNRVTFISLLNGFTTPSGLEE-LSRIHLLITEHGLDDTTTMRNALVNVYGR 409

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLS---SCSSHNN 409
               D+A    D+L + +  I W +++     C  H++
Sbjct: 410 CESPDDARTVFDQLELPNL-ISWNSMIGIYVQCERHDD 446



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 187/386 (48%), Gaps = 10/386 (2%)

Query: 33  SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNT 92
           + R  K IH+   ++    D+ V T L+N  T+     S+  A  +FD +P   +  +N+
Sbjct: 175 ALRKGKFIHSCVRESEHSLDVFVNTALVNTYTK---CGSLTDARKVFDGMPCRSVGTWNS 231

Query: 93  MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
           M   YS S+    A F+F  +   G   D  +F S+L AC  V  E L+ GK +     +
Sbjct: 232 MISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDAC--VNPETLQHGKHVRESISE 289

Query: 153 LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL 212
                +L+V T LI +YA C   E A ++F  + +  +++++AIITA+A      EAL  
Sbjct: 290 TSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRY 349

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           FR +Q+  + P  VT +S L+       L+    IH  I ++GLD    +  AL++++ +
Sbjct: 350 FRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGR 409

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
           C   DDA +VFD +   +  +W++MI  Y    +   ++ +F  M +  + PD + F+ +
Sbjct: 410 CESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTI 469

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L AC+  G         +   ++ G+         +V++  +AG LD A   + E+  + 
Sbjct: 470 LGACT-IGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMD-EQ 527

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIE 418
               W  L++  + H   G +++ +E
Sbjct: 528 QITAWNVLINGYALH---GRSREALE 550



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 172/347 (49%), Gaps = 11/347 (3%)

Query: 71  SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130
           S+  A   F +I   ++V +N M   YS  K+   A+ LF  +L  G+ P+  +  ++L 
Sbjct: 7   SLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLVAVLN 66

Query: 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV 190
           +C       L +G  +H  +++ G   N  V T L+N+Y +C  +  A+ +FE ++E  V
Sbjct: 67  SCGSF--RELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNV 124

Query: 191 VSYNAIITAYA-RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           V++NA++  Y+ +      A+ LF  +    +K   +T L+ L+S     +L  GK+IH 
Sbjct: 125 VTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHS 184

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
            +++      V VNTAL++ + KCG L DA  VFD M  +    W++MI AY+   +  +
Sbjct: 185 CVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGE 244

Query: 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD---KYGIVPGIKHYG 366
           +  +F+ M +     D +TFL +L AC +   +  G +   S+ +   +  +  G     
Sbjct: 245 AFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGT---- 300

Query: 367 CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413
            ++ +  R    ++A +    +  ++  I W  ++++ + H + G A
Sbjct: 301 ALITMYARCRSPEDAAQVFGRMK-QTNLITWSAIITAFADHGHCGEA 346



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 3/254 (1%)

Query: 168 LYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT 227
           +Y+ C  +  A   F  I    VVS+N +I+AY+      EAL+LF  +    + P  +T
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 228 MLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS 287
           +++ L+SC     L  G  +H    + G  +   V TAL++M+ KCG L DA SVF+ M+
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 288 GKDTQAWSAMIVAYATHGQGHK-SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
            K+   W+AM+  Y+  G   K ++ +F  M+   V  + ITFL +L +      + +G 
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
                +R+    +    +   +V+   + G L +A +  D +P +S    W +++S+ S 
Sbjct: 181 FIHSCVRESEHSLDVFVNTA-LVNTYTKCGSLTDARKVFDGMPCRSVGT-WNSMISAYSI 238

Query: 407 HNNLGLAKQVIERI 420
               G A  + +R+
Sbjct: 239 SERSGEAFFIFQRM 252


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 200/571 (35%), Positives = 308/571 (53%), Gaps = 42/571 (7%)

Query: 19  TNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLL 78
           TN  +   LL  C     L QIHA  I +  ++  + +T LIN  +        + A  +
Sbjct: 50  TNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHH-HSITHLINLYS---LFHKCDLARSV 105

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDD-YSFPSLLKACACVGA 137
           FD  P P  +L+N+M R Y+RSK    A+ ++  ++  G L  D +    L+   + +G 
Sbjct: 106 FDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGGLERDVFIGAGLVDMYSKMGD 165

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP--------- 188
             L+  +++     K     ++     +I   ++  D   ARR+F+ + +          
Sbjct: 166 --LKRAREVFDKMPK----RDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMM 219

Query: 189 -------CVV--------------SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT 227
                  C V              ++N II AY ++    EA+S F +++  N  P  VT
Sbjct: 220 AGYAHNGCFVEVLELFDKMKLGNVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVT 279

Query: 228 MLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS 287
            +S L + A L +   G   H  I + G      V  +LIDM+AKCG+LD +  +F+ M 
Sbjct: 280 FVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMD 339

Query: 288 GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN 347
            KDT +W+AM+  YA HG G ++I +F  M ++QV  D ++F+ +L AC H GLV+EG  
Sbjct: 340 HKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRK 399

Query: 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
            F+SM DKY I P ++HY CMVDLLGRAG  DE   FI  +P++    +W  LL SC  H
Sbjct: 400 IFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMH 459

Query: 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSS 467
           +N+ L +  ++ + +L+  +   +V+LS++ A++GRW D    R  M D G+ K PGCS 
Sbjct: 460 SNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSW 519

Query: 468 IEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIAL 527
           +E+ N V  F  GD  H     +    + L+++++ +GYVPD S V   ++E+E+KE+ L
Sbjct: 520 VELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQ-NVEEEDKEMFL 578

Query: 528 RYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             HSE+LAITF LLNTPPG+TI++VKNLRVC
Sbjct: 579 YSHSERLAITFALLNTPPGSTIQIVKNLRVC 609



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 106/240 (44%), Gaps = 44/240 (18%)

Query: 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
           L+S    +   +P LL +C     + L    Q+H   I  G   + +  T LINLY+   
Sbjct: 44  LSSSTYTNYLHYPRLLSSC-----KHLNPLLQIHAQIIVSGFKHH-HSITHLINLYSLFH 97

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
             + AR +F++   P  + +N++I AY RS + NEAL ++  +                 
Sbjct: 98  KCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCM----------------- 140

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
                            ++K GL++ V +   L+DM++K G L  A  VFD M  +D  A
Sbjct: 141 -----------------VEKGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVA 183

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           W+AMI   +     + +  +F++M    V  D++++  ++   +H G   E    F  M+
Sbjct: 184 WNAMIAGLSQSEDPYVARRVFDQM----VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMK 239


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 192/528 (36%), Positives = 292/528 (55%), Gaps = 38/528 (7%)

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN-SGLLPDDYS 124
           N     M+ A  LF+ +P+  IV +N M  GY+++    +A+ LF  +L+ S + PD+++
Sbjct: 134 NTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFT 193

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
             S+L ACA +G   +  GKQ+H + ++  +  N  V   LI+ YA+   VE ARRI + 
Sbjct: 194 ITSVLSACANLGN--VRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQ 251

Query: 185 ISEPC---------------------------------VVSYNAIITAYARSSRPNEALS 211
             E                                   VV++ A+I  Y ++ R +EA+ 
Sbjct: 252 SMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAID 311

Query: 212 LFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271
           LFR +     +P   T+ + LS CA L  LD GK IH    +  L++   V+ A+I M+A
Sbjct: 312 LFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYA 371

Query: 272 KCGRLDDAVSVFDNMSG-KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           + G    A  +FD +   K+T  W++MIVA A HGQG +++ +FEEM++A V PD IT++
Sbjct: 372 RSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYV 431

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
           G+L ACSH G V+EG  Y+  +++++ I P + HY CMVDLL RAG   EA  FI  +P+
Sbjct: 432 GVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPV 491

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL 450
           +   I W +LLS+C  H N  LA+   E++  +D ++ G Y  ++N+ +  GRW D   +
Sbjct: 492 EPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARI 551

Query: 451 RKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT 510
            K  K++ V K  G S   + + +  F + D VH     +      + +E+K  G+VPD 
Sbjct: 552 WKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDL 611

Query: 511 SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             V H D++DE KE  L  HSEKLAI FGL++TP  TT+RV+KNLRVC
Sbjct: 612 QSVLH-DVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVC 658



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 197/438 (44%), Gaps = 77/438 (17%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +F  +PE D V +  M  G +R+     AI   +++   G  P  ++  ++L +CA 
Sbjct: 11  ARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAV 70

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEA----------------- 177
             A A+  G+++H F +KLGL S + V  +++N+Y +C D E                  
Sbjct: 71  TQAGAV--GRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWN 128

Query: 178 --------------ARRIFENISEPCVVSYNAIITAYARSSRPNEALSLF-RELQERNLK 222
                         A  +FE++ +  +VS+NA+I  Y ++    +AL LF R L E ++ 
Sbjct: 129 AMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMA 188

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
           P + T+ S LS+CA LG++ +GK +H YI +  +    +V  ALI  +AK G +++A  +
Sbjct: 189 PDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRI 248

Query: 283 FDN---------------------------------MSGKDTQAWSAMIVAYATHGQGHK 309
            D                                  M+ +D  AW+AMIV Y  +G+  +
Sbjct: 249 MDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDE 308

Query: 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCM 368
           +I +F  M+     P+  T   +L  C+    +D G   +  ++R        + +   +
Sbjct: 309 AIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSN--AI 366

Query: 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN----LGLAKQVIERIFELD 424
           + +  R+G    A R  D++  +   I W +++ + + H      +GL ++++    E D
Sbjct: 367 ITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPD 426

Query: 425 DSHGGDYVILSNLCARAG 442
                 YV + + C+ AG
Sbjct: 427 RI---TYVGVLSACSHAG 441



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 132/273 (48%), Gaps = 6/273 (2%)

Query: 49  LQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIF 108
           ++ DLNV++              ME A  +F  +   D+V +  M  GY ++     AI 
Sbjct: 253 METDLNVIS-FTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAID 311

Query: 109 LFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINL 168
           LF  ++  G  P+ Y+  ++L  CA +    L+ GKQ+HC AI+  L  +  V   +I +
Sbjct: 312 LFRSMITCGPEPNSYTLAAVLSVCASLAC--LDYGKQIHCRAIRSLLEQSSSVSNAIITM 369

Query: 169 YAECSDVEAARRIFENIS-EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT 227
           YA       ARR+F+ +      +++ ++I A A+  +  EA+ LF E+    ++P  +T
Sbjct: 370 YARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRIT 429

Query: 228 MLSALSSCALLGSLDLGKWIHEYIK-KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
            +  LS+C+  G ++ GK  ++ IK ++ +   +     ++D+ A+ G   +A      M
Sbjct: 430 YVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRM 489

Query: 287 SGK-DTQAWSAMIVAYATHGQGHKSILMFEEMM 318
             + D  AW +++ A   H     + L  E+++
Sbjct: 490 PVEPDAIAWGSLLSACRVHKNAELAELAAEKLL 522



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 120/253 (47%), Gaps = 35/253 (13%)

Query: 168 LYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT 227
           ++A+   +  AR +F  + E   VS+  ++    R+ R  EA+    ++      PT  T
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 228 MLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC-------------- 273
           + + LSSCA+  +  +G+ +H ++ K GL   V V  ++++M+ KC              
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 274 -----------------GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEE 316
                            GR+D A S+F++M  +   +W+AMI  Y  +G   K++ +F  
Sbjct: 121 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 180

Query: 317 MM-KAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGR 374
           M+ ++ ++PDE T   +L AC++ G V  G   + Y +R +      + +   ++    +
Sbjct: 181 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALISTYAK 238

Query: 375 AGRLDEAYRFIDE 387
           +G ++ A R +D+
Sbjct: 239 SGSVENARRIMDQ 251


>gi|449517497|ref|XP_004165782.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Cucumis sativus]
          Length = 603

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 195/535 (36%), Positives = 307/535 (57%), Gaps = 9/535 (1%)

Query: 28  LPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDI 87
           L  C         H++ +K    N+   +  LIN   +     S+  AH LFD +P P++
Sbjct: 34  LRNCNDLISSISTHSIALKLGFLNNTVNVNHLINCYVR---FRSIATAHQLFDEMPNPNV 90

Query: 88  VLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLH 147
           V + ++  GY  +  P  A+FLF E+L S ++P+D++F + +KAC+ +    L  G+  H
Sbjct: 91  VSWTSLMAGYVDNGQPSTALFLFGEMLRSPVVPNDFTFATAIKACSIL--SNLRHGEMFH 148

Query: 148 CFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPN 207
                 G   N+ VC++LI++Y +C+DV  AR +F ++S   +VS+ ++I AYA+++  +
Sbjct: 149 AHVEIFGYGGNIVVCSSLIDMYGKCNDVVKARGVFNSMSCKNIVSWTSMIAAYAQNAHGD 208

Query: 208 EALSLFRELQERNLK-PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
           EAL +FRE    + + P    + S +S+CA LG L  GK +H      G D    V + L
Sbjct: 209 EALKVFREFTSLSSEHPNPYMLASVISACASLGRLVSGKVMHGAAISLGCDSSEVVASVL 268

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           +DM+AKCG LD +  VF+ +S      +++MIV+ A +G G KS+ +FEEM++  + P+ 
Sbjct: 269 VDMYAKCGSLDYSDKVFNRISNPSVIPYTSMIVSTAKYGFGRKSLQLFEEMVRKGLKPNH 328

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
           IT +G+L+ACSH+GL +EG  Y  SM +KYGI+P  KHY C+VD+L R G LD+A+    
Sbjct: 329 ITLVGVLHACSHSGLPNEGLYYLTSMYEKYGIMPETKHYTCVVDMLARVGELDKAFDLAK 388

Query: 387 ELPIK--STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444
            + +      +LW  LLS+   H  + +A +  +++   +    G YV LSN+ A AG  
Sbjct: 389 SMDVAPDDKALLWGALLSASRCHGRVDIAAEACQQLVNSNRQVAGAYVTLSNVYASAGDM 448

Query: 445 EDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTD-LQKALDELVKELKM 503
           E    LR  MK  GV K PGCS IE+ +    F++G+       D +   L EL +++K 
Sbjct: 449 EKAHKLRVEMKRTGVHKEPGCSWIEIKDSSYIFYAGEITSCARGDEVLCLLRELDQKMKD 508

Query: 504 VGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            GYV     +   D+E+E +E  +  HSE+LA+ FGL++ P G TIR++KNLR+C
Sbjct: 509 RGYVRGRKGLVFVDIEEEAEEEKVWLHSERLALGFGLISIPKGLTIRIMKNLRMC 563


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 191/533 (35%), Positives = 303/533 (56%), Gaps = 39/533 (7%)

Query: 27  LLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPD 86
           +L  C +    ++IH    K   Q ++ V   LI+  ++   T     A  LFD +P  D
Sbjct: 124 VLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGI---ARSLFDDMPFRD 180

Query: 87  IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQL 146
           +  +N M  G                L+ +G                   A+AL+   ++
Sbjct: 181 MGSWNAMISG----------------LIQNG-----------------NAAQALDVLDEM 207

Query: 147 HCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRP 206
               IK+   + + +    +++YA+   +++A ++FE I    V+S+N +IT YA++   
Sbjct: 208 RLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLA 267

Query: 207 NEALSLFRELQE-RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTA 265
           +EA+ +++ ++E + + P   T +S L + A +G+L  G  IH  + K  L   V V T 
Sbjct: 268 SEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATC 327

Query: 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
           LID++ KCGRL DA+S+F  +  + +  W+A+I  +  HG   K++ +F EM+   V PD
Sbjct: 328 LIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPD 387

Query: 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI 385
            +TF+ LL ACSH+G V+EG  + + +  +YGI P +KHYGCMVDLLGRAG L+ AY FI
Sbjct: 388 HVTFVSLLSACSHSGFVEEG-KWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFI 446

Query: 386 DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWE 445
            ++P++    +W  LL +C  H N+ L K   +R+FE+D  + G YV+LSN+ A  G+WE
Sbjct: 447 KDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWE 506

Query: 446 DVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVG 505
            VD +R L ++RG+ K PG S+IEVN  V  F++G+  H    ++ + L  L  ++K +G
Sbjct: 507 GVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLG 566

Query: 506 YVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           Y+PD S V   D+E++EKE  L  HSE+LAI FG+++TPP + IR+ KNLRVC
Sbjct: 567 YIPDYSFVLQ-DVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVC 618



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 215/437 (49%), Gaps = 53/437 (12%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K +HA+ +       + + T+L+N          +  +   FD+IP+ D+  +N+M   Y
Sbjct: 36  KCLHALLVVAGKVQSIFISTRLVNLYA---NLGDVSLSRCTFDQIPQKDVYAWNSMISAY 92

Query: 98  SRSKTPIRAIFLFVELL-NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
             +     AI  F +LL  S + PD Y+FP +LKAC       L +G+++HC+A KLG  
Sbjct: 93  VHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG-----TLVDGRKIHCWAFKLGFQ 147

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            N++V  +LI++Y+       AR +F+++    + S+NA+I+   ++    +AL +  E+
Sbjct: 148 WNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEM 207

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           +   +K   VT++S L                                  +DM+AK G L
Sbjct: 208 RLEGIKMNFVTVVSILP-------------------------------VFVDMYAKLGLL 236

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA-QVSPDEITFLGLLYA 335
           D A  VF+ +  KD  +W+ +I  YA +G   ++I +++ M +  ++ P++ T++ +L A
Sbjct: 237 DSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPA 296

Query: 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
            +H G + +G    +    K  +   +    C++D+ G+ GRL +A     ++P +S+ +
Sbjct: 297 YAHVGALQQGMK-IHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESS-V 354

Query: 396 LWRTLLSSCSSHNNLGLAKQVIERIFE-LDDSHGGDYVILSNL---CARAGRWEDVDYLR 451
            W  ++S    H   G A++ ++   E LD+    D+V   +L   C+ +G  E+  +  
Sbjct: 355 TWNAIISCHGIH---GHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCF 411

Query: 452 KLMKDRGV---LKVPGC 465
           +LM++ G+   LK  GC
Sbjct: 412 RLMQEYGIKPSLKHYGC 428



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 132/315 (41%), Gaps = 54/315 (17%)

Query: 16  KLCTNTPNALSLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSM 72
           ++  N    +S+LP       L+Q   IH   IKT+L  D+ V T LI+   +      +
Sbjct: 282 EIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGK---CGRL 338

Query: 73  EHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132
             A  LF ++P+   V +N +   +       + + LF E+L+ G+ PD  +F SLL AC
Sbjct: 339 VDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSAC 398

Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
           +  G   +EEGK   CF                             R + E   +P +  
Sbjct: 399 SHSG--FVEEGKW--CF-----------------------------RLMQEYGIKPSLKH 425

Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
           Y  ++    R+     A    +++    L+P      + L +C + G+++LGK+  +  +
Sbjct: 426 YGCMVDLLGRAGYLEMAYDFIKDMP---LQPDASIWGALLGACRIHGNIELGKFASD--R 480

Query: 253 KYGLD-KYVKVNTALIDMHAKCGR---LDDAVSVFDNMSGKDTQAWSAMIV-----AYAT 303
            + +D K V     L +++A  G+   +D   S+      K T  WS + V      + T
Sbjct: 481 LFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYT 540

Query: 304 HGQGH-KSILMFEEM 317
             Q H K   ++EE+
Sbjct: 541 GNQSHPKCKEIYEEL 555


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 181/521 (34%), Positives = 311/521 (59%), Gaps = 6/521 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           K  HA  +   L+ DL     LIN  ++     S++ A  +FD +P   +V +NTM    
Sbjct: 84  KACHAQILLMGLKTDLLTSNILINMYSK---CGSVDFARQVFDEMPSRSLVSWNTMIGSL 140

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           +++     A+ L +++   G    +++  S+L  CAC    AL E + LH FAIK  ++ 
Sbjct: 141 TQNGEENEALDLLLQMQREGTPFSEFTISSVL--CACAAKCALSECQLLHAFAIKAAMDL 198

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           N++V T L+++YA+C  ++ A  +FE++ +  VV+++++   Y ++    +AL+LFR+  
Sbjct: 199 NVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAW 258

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           E  LK     M S + +CA L ++  GK ++  + K G    + V ++LIDM+AKCG ++
Sbjct: 259 ETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIE 318

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           ++  VF ++  ++   W+AMI   + H +  + +++FE+M +  +SP+++TF+ +L AC 
Sbjct: 319 ESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACG 378

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H GLV +G  YF  M  ++ + P + HY CMVD L RAG++ EAY  I +LP  ++  +W
Sbjct: 379 HMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMW 438

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457
            +LL+SC +H NL LA+   +++F+++  + G+Y++LSN+ A  G+W++V  +RKL+K+ 
Sbjct: 439 GSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKES 498

Query: 458 GVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGD 517
            V K  G S IE+ + V  F  G+  H    ++   L+E++ EL+ +GY  +T    H  
Sbjct: 499 DVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQV 558

Query: 518 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            E  ++E+ LR+HSEKLA T GLL  PP   IR++KNLR+C
Sbjct: 559 GESIKQEL-LRHHSEKLAFTMGLLFLPPNAPIRIMKNLRIC 598



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 142/274 (51%), Gaps = 2/274 (0%)

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
           C   + L +GK  H   + +GL ++L     LIN+Y++C  V+ AR++F+ +    +VS+
Sbjct: 74  CAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSW 133

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
           N +I +  ++   NEAL L  ++Q      ++ T+ S L +CA   +L   + +H +  K
Sbjct: 134 NTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIK 193

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
             +D  V V TAL+D++AKCG + DAV VF++M  +    WS+M   Y  +    +++ +
Sbjct: 194 AAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALAL 253

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           F +  +  +  D+     ++ AC+    + EG     ++  K G    I     ++D+  
Sbjct: 254 FRKAWETGLKHDQFLMSSVICACAGLAAMIEG-KQMNALLSKSGFCSNIFVASSLIDMYA 312

Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
           + G ++E+Y+   ++  K   +LW  ++S  S H
Sbjct: 313 KCGGIEESYKVFRDVE-KRNVVLWNAMISGLSRH 345


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 193/526 (36%), Positives = 291/526 (55%), Gaps = 14/526 (2%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           KQIH + +K  +  D+ V     + +C     T     A  +FD +P+ ++  +N     
Sbjct: 128 KQIHGLALKGGMIYDVFVGCSCFDMYCK----TGFRGDACNMFDEMPQRNLATWNAYISN 183

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
             + +  + AI  F E L     P+  +F + L AC  V    L  G+QLH F ++ G  
Sbjct: 184 AVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNAC--VDMVRLNLGRQLHAFIVRCGYK 241

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENI-SEPCVVSYNAIITAYARSSRPNEALSLFRE 215
            ++ V   LI+ Y +C D+ +A  +F  I +   VVS+ +++ A  ++     A  +F  
Sbjct: 242 EDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVF-- 299

Query: 216 LQERN-LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
           LQ R  ++PTD  + S LS+CA LG L+LG+ +H    K  ++  + V +AL+DM+ KCG
Sbjct: 300 LQARKEVEPTDFMISSVLSACAELGGLELGRSVHALAVKACVEDNIFVGSALVDMYGKCG 359

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ--VSPDEITFLGL 332
            +++A  VF  +  ++   W+AMI  YA  G    ++ +FEEM      + P  +T + +
Sbjct: 360 SIENAEQVFSELPERNLVTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISI 419

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L  CS  G V+ G   F SMR  YGI PG +H+ C+VDLLGR+G +D AY FI  + I+ 
Sbjct: 420 LSVCSRVGAVERGIQIFESMRLNYGIEPGAEHFACVVDLLGRSGLVDRAYEFIQNMAIQP 479

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452
           T  +W  LL +C  H    L K   E++FELD    G++V+LSN+ A AGRWE+   +RK
Sbjct: 480 TISVWGALLGACRMHGKTELGKIAAEKLFELDHVDSGNHVVLSNMLASAGRWEEATVVRK 539

Query: 453 LMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSL 512
            MKD G+ K  G S I V N +  F + D  H  ++++Q  L +L   +K  GYVPDT+L
Sbjct: 540 EMKDIGIKKNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQAMLGKLRGGMKEAGYVPDTNL 599

Query: 513 VHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
               D+EDEEK   + YHSEK+A+ FGL+  P G  IR+ KNLR+C
Sbjct: 600 SLF-DLEDEEKASEVWYHSEKIALAFGLIALPQGVPIRITKNLRIC 644



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/415 (23%), Positives = 205/415 (49%), Gaps = 17/415 (4%)

Query: 38  KQIHAVTIKTHLQNDLNVLTK-LINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           + IHA  I+TH+    + L+  L+N  ++    +S +H   +        +V + ++  G
Sbjct: 26  RTIHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQH---VLSLTHLRTVVTWTSLISG 82

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
              ++  + A+  F  +    + P+D++FP + KA A V  +    GKQ+H  A+K G+ 
Sbjct: 83  CVHNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFV--QIPMTGKQIHGLALKGGMI 140

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            +++V  +  ++Y +      A  +F+ + +  + ++NA I+   +  R  +A+  F+E 
Sbjct: 141 YDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEF 200

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
              + +P  +T  + L++C  +  L+LG+ +H +I + G  + V V   LID + KCG +
Sbjct: 201 LCVHGEPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDI 260

Query: 277 DDAVSVFDNMSG-KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
             A  VF+ +   K+  +W +M+ A   + +  ++ ++F +  K +V P +     +L A
Sbjct: 261 VSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQARK-EVEPTDFMISSVLSA 319

Query: 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
           C+  G ++ G    +++  K  +   I     +VD+ G+ G ++ A +   ELP ++  +
Sbjct: 320 CAELGGLELG-RSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSELPERNL-V 377

Query: 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG--GDYVILSNL---CARAGRWE 445
            W  ++   +   ++ +A ++ E +     SHG    YV L ++   C+R G  E
Sbjct: 378 TWNAMIGGYAHQGDIDMALRLFEEM--TLGSHGIRPSYVTLISILSVCSRVGAVE 430


>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 572

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 191/531 (35%), Positives = 313/531 (58%), Gaps = 20/531 (3%)

Query: 39  QIHAVTIKTHL--QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
           Q+H   +K  +  ++    L+K+  F   +P    + +A LL    P  +   +NT+ R 
Sbjct: 11  QVHGQVVKLGMGHKDASRKLSKVFTFAALSPF-GDLNYARLLLSTNPTLNSYYYNTLLRA 69

Query: 97  YSRS---KTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL 153
           +S++     P  A+ LF+ + +    PD+++FP LLK C+      L  GKQLH    KL
Sbjct: 70  FSQTPLPTPPFHALSLFLSMPSP---PDNFTFPFLLKCCSRSKLPPL--GKQLHALLTKL 124

Query: 154 GLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLF 213
           G   +LY+   L+++Y+E  D+  AR +F+ +    VVS+ ++I        P EA++LF
Sbjct: 125 GFAPDLYIQNVLLHMYSEFGDLLLARSLFDRMPHRDVVSWTSMIGGLVNHDLPVEAINLF 184

Query: 214 RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK--VNTALIDMHA 271
             + +  ++  + T++S L +CA  G+L +G+ +H  ++++G++ + K  V+TAL+DM+A
Sbjct: 185 ERMLQCGVEVNEATVISVLRACADSGALSMGRKVHANLEEWGIEIHSKSNVSTALVDMYA 244

Query: 272 KCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLG 331
           K G +  A  VFD++  +D   W+AMI   A+HG    +I MF +M  + V PDE T   
Sbjct: 245 KGGCIASARKVFDDVVHRDVFVWTAMISGLASHGLCKDAIDMFVDMESSGVKPDERTVTA 304

Query: 332 LLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIK 391
           +L AC + GL+ EG+  F  ++ +YG+ P I+H+GC+VDLL RAGRL EA  F++ +PI+
Sbjct: 305 VLTACRNAGLIREGFMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMPIE 364

Query: 392 STPILWRTLLSSCSSHNNLGLAKQVIERI----FELDDSHGGDYVILSNLCARAGRWEDV 447
              +LWRTL+ +C  H +   A+++++ +       DDS  G Y++ SN+ A  G+W + 
Sbjct: 365 PDTVLWRTLIWACKVHGDADRAERLMKHLEIQDMRADDS--GSYILASNVYASTGKWCNK 422

Query: 448 DYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYV 507
             +R+LM  +G++K PG S IEV+  V EF  GD  H  + ++   L E+V +++  GY 
Sbjct: 423 AEVRELMNKKGLVKPPGTSRIEVDGGVHEFVMGDYNHPEAEEIFVELAEVVDKIRKEGYD 482

Query: 508 PDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           P  S V   +M+DEEK + L +HSEKLA+ +GL+    G+TIR+VKNLR C
Sbjct: 483 PRVSEVLL-EMDDEEKAVQLLHHSEKLALAYGLIRIGHGSTIRIVKNLRSC 532


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 190/525 (36%), Positives = 307/525 (58%), Gaps = 13/525 (2%)

Query: 38  KQIHAVTIKTHL---QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMA 94
           KQ H   +K+ L   Q   N L  + + C      S+M+    + D +P  D+  +N++ 
Sbjct: 148 KQCHGYLLKSGLLLHQYVKNALIHMYSRCFH--VDSAMQ----ILDTVPGDDVFSYNSIL 201

Query: 95  RGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154
                S     A  +   +++  ++ D  ++ S+L  CA +    L+ G Q+H   +K G
Sbjct: 202 SALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQI--RDLQLGLQIHAQLLKTG 259

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           L  +++V +TLI+ Y +C +V  AR+ F+ + +  VV++ A++TAY ++    E L+LF 
Sbjct: 260 LVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFT 319

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
           +++  + +P + T    L++CA L +L  G  +H  I   G   ++ V  ALI+M++K G
Sbjct: 320 KMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKSG 379

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
            +D + +VF NM  +D   W+AMI  Y+ HG G +++L+F++MM A   P+ +TF+G+L 
Sbjct: 380 NIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLS 439

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID-ELPIKST 393
           AC H  LV EG+ YF  +  K+ + PG++HY CMV LLGRAG LDEA  F+     +K  
Sbjct: 440 ACVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWD 499

Query: 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKL 453
            + WRTLL++C  H N  L KQ+ E + ++D    G Y +LSN+ A+A +W+ V  +RKL
Sbjct: 500 VVAWRTLLNACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKWDGVVKIRKL 559

Query: 454 MKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLV 513
           MK+R + K PG S +++ N    F S    H  ST + + + +L+  +K +GY PD  +V
Sbjct: 560 MKERNIKKEPGASWLDIRNNTHVFVSEGSNHPESTQIFEKVQQLLAMIKPLGYAPDVGVV 619

Query: 514 HHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            H D+EDE+KE  L +HSEKLA+ +GL+  PP   IR++KNLR+C
Sbjct: 620 LH-DVEDEQKEGYLSHHSEKLALAYGLMKIPPPGPIRIIKNLRMC 663



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 117/413 (28%), Positives = 199/413 (48%), Gaps = 22/413 (5%)

Query: 13  PPPKLCTNTPNALSLLPRCTSFRGLKQIHA---VTIKTHLQNDLNVLTKLINFCTQNPTT 69
           P P       N L       S R  K IHA   V  +T   +D+  +  LIN  ++   +
Sbjct: 18  PHPCSLKEVVNLLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQS 77

Query: 70  SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN-SGLLPDDYSFPSL 128
                A  LFDR+ + ++V ++ +  GY      +  + LF  L++     P++Y F  +
Sbjct: 78  KC---ARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIV 134

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP 188
           L  CA  G   ++EGKQ H + +K GL  + YV   LI++Y+ C  V++A +I + +   
Sbjct: 135 LSCCADSGR--VKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGD 192

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
            V SYN+I++A   S    EA  + + + +  +    VT +S L  CA +  L LG  IH
Sbjct: 193 DVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIH 252

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
             + K GL   V V++ LID + KCG + +A   FD +  ++  AW+A++ AY  +G   
Sbjct: 253 AQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFE 312

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY--- 365
           +++ +F +M      P+E TF  LL AC+   LV   +      R    ++ G K++   
Sbjct: 313 ETLNLFTKMELEDTRPNEFTFAVLLNACA--SLVALAYGDLLHGRI---VMSGFKNHLIV 367

Query: 366 -GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417
              ++++  ++G +D +Y     + +    I W  ++   S H   GL KQ +
Sbjct: 368 GNALINMYSKSGNIDSSYNVFSNM-MNRDVITWNAMICGYSHH---GLGKQAL 416


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 174/484 (35%), Positives = 290/484 (59%), Gaps = 12/484 (2%)

Query: 27  LLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           +L  CT F G++   Q+H V +K     DL V   L++F +          A  +FD + 
Sbjct: 111 VLKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYS---VCGKWGGAGRVFDEML 167

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
             D+V +  +  GY R+     AI LF+++    ++P+  +F S+L AC  +G   L  G
Sbjct: 168 VRDVVSWTGLISGYVRTGLFDEAINLFLKM---DVVPNVATFVSVLVACGRMGY--LSMG 222

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
           K +H    K      L V   L+++Y +C  +  AR++F+ + +  +VS+ +II+   + 
Sbjct: 223 KGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQC 282

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
            +P ++L LF ++Q   ++P  + + S LS+CA LG+LD G+W+ EYI++ G++  + + 
Sbjct: 283 KQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIG 342

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
           TAL+DM+AKCG ++ A+ +F+ +  ++   W+A++   A HG GH+++  FE M+ A + 
Sbjct: 343 TALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIR 402

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDK-YGIVPGIKHYGCMVDLLGRAGRLDEAY 382
           P+E+TFL +L AC H+GLV EG +YFY M  + +   P ++HYGCM+DLL RAG LDEAY
Sbjct: 403 PNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAY 462

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
           +FI  +P+    ++W  LLS+C ++ N+ L+++++  + EL     G YV+LSN+ A   
Sbjct: 463 KFIRNMPLPPDVLIWGALLSACKANGNVELSQEILSHLLELKSQDSGVYVLLSNIYATNE 522

Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           RW+DV  +R+LMKD+G+ K PG S IEV+    EF  GD  HS + D+   L+ L  ++ 
Sbjct: 523 RWDDVTRVRRLMKDKGIRKFPGSSVIEVDGEAHEFLVGDTNHSRNEDIHILLNILANQVY 582

Query: 503 MVGY 506
           + G+
Sbjct: 583 LEGH 586



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/390 (30%), Positives = 205/390 (52%), Gaps = 18/390 (4%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           L+ + RC + R LKQIHA  I + L +D  VL+K+  F  ++     +++A   FD + +
Sbjct: 9   LNSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKH--IGFVDYA---FDFLNQ 63

Query: 85  PDIVL----FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEAL 140
            D+ +    +NT+   Y+ S TP  A  ++  ++ +G +PD Y+FP +LKAC       +
Sbjct: 64  TDLHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACT--KFLGV 121

Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY 200
           +EG+Q+H  A+K+G   +LYV  +L++ Y+ C     A R+F+ +    VVS+  +I+ Y
Sbjct: 122 QEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGY 181

Query: 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
            R+   +EA++LF ++   ++ P   T +S L +C  +G L +GK +H  + K      +
Sbjct: 182 VRTGLFDEAINLFLKM---DVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGL 238

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            V  AL+DM+ KC  L +A  +FD +  +D  +W+++I       Q   S+ +F +M  +
Sbjct: 239 VVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQIS 298

Query: 321 QVSPDEITFLGLLYACSHTGLVDEG-WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
            V PD I    +L AC+  G +D G W   Y  R   GI   I     +VD+  + G ++
Sbjct: 299 GVEPDRIILTSVLSACASLGALDYGRWVQEYIERQ--GIEWDIHIGTALVDMYAKCGCIE 356

Query: 380 EAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
            A    + +P ++    W  LL   + H +
Sbjct: 357 MALHIFNGIPNRNI-FTWNALLGGLAMHGH 385



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 141/325 (43%), Gaps = 20/325 (6%)

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV--VSYNAIITAYA 201
           KQ+H   I  GL  + +V + +   + +          F N ++  V  + YN +I AYA
Sbjct: 22  KQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFLNQTDLHVGTLPYNTLIAAYA 81

Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
            S  P  A  ++  +      P   T    L +C     +  G+ +H    K G    + 
Sbjct: 82  SSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGFLCDLY 141

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           V  +L+  ++ CG+   A  VFD M  +D  +W+ +I  Y   G   ++I +F   +K  
Sbjct: 142 VQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLF---LKMD 198

Query: 322 VSPDEITFLGLLYACSHTGLVDEG---WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
           V P+  TF+ +L AC   G +  G       Y      G+V G      +VD+  +   L
Sbjct: 199 VVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVG----NALVDMYVKCECL 254

Query: 379 DEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH-GGDYVILSNL 437
            EA +  DELP +   + W +++S           K  +E  +++  S    D +IL+++
Sbjct: 255 CEARKLFDELPDRDI-VSWTSIISGLVQCKQ---PKDSLELFYDMQISGVEPDRIILTSV 310

Query: 438 ---CARAGRWEDVDYLRKLMKDRGV 459
              CA  G  +   ++++ ++ +G+
Sbjct: 311 LSACASLGALDYGRWVQEYIERQGI 335


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 182/522 (34%), Positives = 297/522 (56%), Gaps = 7/522 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +QIH + IKT    D+ V   L++F +++     ++ A  LFD +PE D V +N +  GY
Sbjct: 264 QQIHGLAIKTSYVWDIFVANALLDFYSKHDY---IDLAKNLFDEMPELDGVSYNIIITGY 320

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           + +    ++  LF  L  +     ++ F ++L   A      L  G+Q H  A+     S
Sbjct: 321 AWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAI--ELNLSMGRQTHAQAVVTTAVS 378

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
            + V   L+++YA+C   E A RIF N++    V + AII+ Y +     EAL +F+E+ 
Sbjct: 379 EVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMN 438

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
             N+     T  S L + A L S+ LGK +H  + + GL   V   + L+DM+A CG + 
Sbjct: 439 RENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMK 498

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
           DA+ VF  M  ++   W+A+I AY+ +G    +   F +M+++ + PD ++FL +L ACS
Sbjct: 499 DAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACS 558

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW 397
           H GLV++   YF SM   Y + P  KHY  M+D+L R+GR +EA   I E+P +   ++W
Sbjct: 559 HRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMPFEPDEVMW 618

Query: 398 RTLLSSCSSHNNLGLAKQVIERIFELDD-SHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
            ++L+SC  H N  LAK+  +++F++D       YV +SN+ A AG+WE+   ++K M++
Sbjct: 619 SSVLNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKWENAAKVKKAMRE 678

Query: 457 RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHG 516
           RGV KV   S +E+++ V  F + D  H  +  +++ ++ LV+ +   GY PDTS     
Sbjct: 679 RGVKKVTAYSWVEIDHRVHVFTANDRTHPQTEQIRRKINSLVELMDKEGYKPDTSCTLQ- 737

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           ++++E K  +L+YHSE+LAI F L+NTP G+ I ++KNLR C
Sbjct: 738 NVDEEMKIESLKYHSERLAIAFALINTPEGSPIIIMKNLRAC 779



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 194/386 (50%), Gaps = 9/386 (2%)

Query: 25  LSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEHAHLLFDRIP 83
           LS     T+ + + QIH+  I+      L V   L++ +C     T  ++ A  LF  +P
Sbjct: 150 LSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCK----TCCLDIASQLFSEMP 205

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
             D V FN M  GY++      A+ LF+++ N    P  ++F ++L     VG+E +  G
Sbjct: 206 TKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLG--MSVGSEDVIFG 263

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
           +Q+H  AIK     +++V   L++ Y++   ++ A+ +F+ + E   VSYN IIT YA +
Sbjct: 264 QQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWN 323

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
            +  ++  LF+ LQ  +    +    + LS  A+  +L +G+  H           V+V 
Sbjct: 324 GQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVG 383

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
            AL+DM+AKC + +DA  +F N++ +++  W+A+I  Y   G   +++ MF+EM +  V 
Sbjct: 384 NALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVH 443

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
            D+ TF   L A ++   V  G    +S   + G++  +     +VD+    G + +A  
Sbjct: 444 GDQATFASTLKASANLASVSLG-KQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIE 502

Query: 384 FIDELPIKSTPILWRTLLSSCSSHNN 409
              E+P ++  + W  L+S+ S + +
Sbjct: 503 VFKEMPDRNI-VCWNALISAYSQNGD 527



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 167/369 (45%), Gaps = 9/369 (2%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  LF+ +   + V +  M  GYS++  P  A  L+ E+  SG+ PD  +F +LL     
Sbjct: 96  ARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFD- 154

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
                L+E  Q+H   I+ G +++L V  +L++ Y +   ++ A ++F  +     VS+N
Sbjct: 155 -DTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFN 213

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
            +IT Y +     EAL LF +++  + +P+  T  + L        +  G+ IH    K 
Sbjct: 214 VMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKT 273

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
                + V  AL+D ++K   +D A ++FD M   D  +++ +I  YA +GQ  KS  +F
Sbjct: 274 SYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLF 333

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
           + +           F  +L   +    +  G    ++       V  ++    +VD+  +
Sbjct: 334 KRLQGTSFDRKNFPFATMLSVAAIELNLSMG-RQTHAQAVVTTAVSEVQVGNALVDMYAK 392

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL--DDSHGGDYV 432
             + ++A R    L  +++ + W  ++   S +   G  ++ ++   E+  ++ HG    
Sbjct: 393 CEKFEDANRIFANLAYRNS-VPWTAII---SIYVQKGFHEEALKMFKEMNRENVHGDQAT 448

Query: 433 ILSNLCARA 441
             S L A A
Sbjct: 449 FASTLKASA 457



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 135/316 (42%), Gaps = 33/316 (10%)

Query: 96  GYSRSKTPIRAIFLF------------------VELLNSGLLPDDYSFPSLLKACACVGA 137
           G SR+K P   I +F                    ++ +G  P+   F   LK    V A
Sbjct: 2   GSSRAKNPWGVIRIFSKRFYCGFSERIVDIPVDARIVKTGFDPEISRFNFKLKDL--VRA 59

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINL----YAECSDVEAARRIFENISEPCVVSY 193
             + + +QL         +   Y  T+ +N+    Y +  ++  AR +FE++     VS+
Sbjct: 60  NQIAKARQL--------FDEMPYRNTSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSW 111

Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
             +I  Y+++++P EA +L+ E+    +KP  +T  + LS      +L     IH +I +
Sbjct: 112 TIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIR 171

Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
           +G    + V  +L+D + K   LD A  +F  M  KD+ +++ MI  Y  +G   +++ +
Sbjct: 172 FGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKL 231

Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
           F +M      P   TF  +L     +  V  G    + +  K   V  I     ++D   
Sbjct: 232 FMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFG-QQIHGLAIKTSYVWDIFVANALLDFYS 290

Query: 374 RAGRLDEAYRFIDELP 389
           +   +D A    DE+P
Sbjct: 291 KHDYIDLAKNLFDEMP 306



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 115/249 (46%), Gaps = 16/249 (6%)

Query: 263 NTALIDM----HAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
           NT+ ++M    + K   L  A  +F++M  ++  +W+ MI  Y+ + Q  ++  ++ EM 
Sbjct: 76  NTSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMC 135

Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
           ++ V PD ITF  LL     T  + E     +S   ++G    +  +  +VD   +   L
Sbjct: 136 RSGVKPDHITFATLLSGFDDTTTLKEVLQ-IHSHIIRFGFSASLIVFNSLVDSYCKTCCL 194

Query: 379 DEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438
           D A +   E+P K + + +  +++  + +     A ++  ++  +D    G +   + L 
Sbjct: 195 DIASQLFSEMPTKDS-VSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSG-FTFAAMLG 252

Query: 439 ARAGRWEDVDYLRKLMKDRGV-LKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDEL 497
              G  EDV + +++    G+ +K      I V N + +F+S    H Y  DL K L + 
Sbjct: 253 MSVGS-EDVIFGQQI---HGLAIKTSYVWDIFVANALLDFYSK---HDY-IDLAKNLFDE 304

Query: 498 VKELKMVGY 506
           + EL  V Y
Sbjct: 305 MPELDGVSY 313


>gi|357496515|ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493561|gb|AES74764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 637

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 206/584 (35%), Positives = 319/584 (54%), Gaps = 62/584 (10%)

Query: 26  SLLPRC---TSFRGLKQIHAVTIKTHLQND-----LNVLTKLINFCTQNPTTSSMEHAHL 77
           SLL +C   T+ R  +Q+HA  I T L +       N L  L   C+  P+     HA  
Sbjct: 25  SLLRQCSRATALRPGQQLHATAIVTGLISSPNHFLRNALLHLYGSCSL-PS-----HARK 78

Query: 78  LFDRIPEP--DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
           LFD IP+   D V +  + R       P  ++ LF+++    L  D       L ACA +
Sbjct: 79  LFDEIPQSHKDSVDYTALIR----HCPPFESLKLFIQMRQFDLPLDGVVMVCALNACARL 134

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
           G    + G Q+H   +K G      VC  L+N+Y +   V  AR++FE I    VVS++ 
Sbjct: 135 GGGDTKVGSQMHVGVVKFGFVKFDKVCNALMNVYVKFGLVGEARKMFEGIEVRSVVSWSC 194

Query: 196 IITAYARSSRPNEALSLFRELQERN--------------------------------LKP 223
            +    +         LF E+ ERN                                 + 
Sbjct: 195 FLEGLVKWESVESGRVLFDEMPERNEVAWTVMIVGYVGNGFTKEAFLLLKEMVFGCGFRL 254

Query: 224 TDVTMLSALSSCALLGSLDLGKWIHEY-IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
           + VT+ S LS+C+  G + +G+W+H Y +K+ GLD  V V T+L+DM+AKCGR++ A+SV
Sbjct: 255 SFVTLCSVLSACSQSGDVCVGRWVHCYAVKEMGLDFGVMVGTSLVDMYAKCGRINAALSV 314

Query: 283 FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342
           F +M  ++  AW+AM+   A HG G  ++ MF  M++ +V PD +TF+ LL ACSH+GLV
Sbjct: 315 FRSMLKRNVVAWNAMLGGLAMHGMGKIAVDMFPSMVE-EVKPDGVTFMALLSACSHSGLV 373

Query: 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
           ++GW+YF+ +   Y I P I+HY CMV LLGRAGRL+EA   +  + I    ++  +L+ 
Sbjct: 374 EKGWDYFHDLEPVYRIKPEIEHYACMVGLLGRAGRLEEAEIMVKNMRIPPNEVVLGSLIG 433

Query: 403 SCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKV 462
           SC +H  L L ++++  + E+D  +   +++LSN+ A +G+ E  + LR+++K RG+ KV
Sbjct: 434 SCYAHGRLQLGEKIMRDLLEMDPLNTEYHIVLSNMYALSGKVEKANSLRQVLKKRGIKKV 493

Query: 463 PGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTS---LVHHGDME 519
           PG SSI V+  + +F +GD  H+ ++++   LDE++  L+  GYVP+TS   L    + +
Sbjct: 494 PGMSSIYVDGKLHQFIAGDKSHTRTSEIYMKLDEMICRLRSAGYVPNTSCQVLFGCSNRD 553

Query: 520 D-----EEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           D     EE E  L  HSEKLA+ FGL++TP G+ + + KNLR+C
Sbjct: 554 DCSESLEEVEQVLFTHSEKLALCFGLMSTPSGSPLHIFKNLRIC 597



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 174/372 (46%), Gaps = 54/372 (14%)

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNS--NLYVCTTLINLYAECSDVEAARRIF 182
           F SLL+ C+   A AL  G+QLH  AI  GL S  N ++   L++LY  CS    AR++F
Sbjct: 23  FRSLLRQCS--RATALRPGQQLHATAIVTGLISSPNHFLRNALLHLYGSCSLPSHARKLF 80

Query: 183 ENI--SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240
           + I  S    V Y A+I    R   P E+L LF ++++ +L    V M+ AL++CA LG 
Sbjct: 81  DEIPQSHKDSVDYTALI----RHCPPFESLKLFIQMRQFDLPLDGVVMVCALNACARLGG 136

Query: 241 LD--LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVS----------------- 281
            D  +G  +H  + K+G  K+ KV  AL++++ K G + +A                   
Sbjct: 137 GDTKVGSQMHVGVVKFGFVKFDKVCNALMNVYVKFGLVGEARKMFEGIEVRSVVSWSCFL 196

Query: 282 --------------VFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM-KAQVSPDE 326
                         +FD M  ++  AW+ MIV Y  +G   ++ L+ +EM+         
Sbjct: 197 EGLVKWESVESGRVLFDEMPERNEVAWTVMIVGYVGNGFTKEAFLLLKEMVFGCGFRLSF 256

Query: 327 ITFLGLLYACSHTGLVDEG-WNYFYSMRD---KYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
           +T   +L ACS +G V  G W + Y++++    +G++ G      +VD+  + GR++ A 
Sbjct: 257 VTLCSVLSACSQSGDVCVGRWVHCYAVKEMGLDFGVMVGTS----LVDMYAKCGRINAAL 312

Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
                + +K   + W  +L   + H    +A  +   + E     G  ++ L + C+ +G
Sbjct: 313 SVFRSM-LKRNVVAWNAMLGGLAMHGMGKIAVDMFPSMVEEVKPDGVTFMALLSACSHSG 371

Query: 443 RWED-VDYLRKL 453
             E   DY   L
Sbjct: 372 LVEKGWDYFHDL 383


>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
          Length = 569

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 189/526 (35%), Positives = 293/526 (55%), Gaps = 48/526 (9%)

Query: 31  CTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLF 90
           C + + LKQIH   I         +L KL++F     T+ ++ +AH +F+RI  P   ++
Sbjct: 44  CDTIKKLKQIHTQIIVNGFSQKNFLLVKLLSFYI---TSGNLLNAHKVFERIENPSTTVW 100

Query: 91  NTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFA 150
           N M RG+S+S+TP + + L+  ++ +   P+++++  L+  CA   +  L EG+Q+H   
Sbjct: 101 NQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCA--RSXLLREGEQVHGRV 158

Query: 151 IKLGLNSNLYVCTTLINLYA----------------------------------ECSDVE 176
           +  G  +N++V T+L+NLYA                                   C DV+
Sbjct: 159 VANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVD 218

Query: 177 AARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236
            ARRIF+ + E  VVS+  +I   A+  R  +AL LF E++   +K   V +++ALS+CA
Sbjct: 219 GARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACA 278

Query: 237 LLGSLDLGKWIHEYIKKY----GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ 292
            LG L LG WIH YI +          V +N +LI M+A CG +D A  VF  M  + T 
Sbjct: 279 ELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTI 338

Query: 293 AWSAMIVAYATHGQGHKSILMFEEMMKA---QVSPDEITFLGLLYACSHTGLVDEGWNYF 349
           +W++MI  +A  G   +++ +F+ M +    +  PD ITF+G+L ACSH G VD+G ++F
Sbjct: 339 SWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFF 398

Query: 350 YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNN 409
             M  K+GIVP I+HYGCMVDLL RAG LDEA+R  + +P+K    +W  LL  C  H N
Sbjct: 399 ECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLXESMPMKPNDAVWGALLGGCRIHKN 458

Query: 410 LGLAKQVIER-IFELD-DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSS 467
             LA  V ++ + EL  D   G  V+LSN+ A A RW+DV  +R+ M + GV K  G S 
Sbjct: 459 AELASHVAQKLVLELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSW 518

Query: 468 IEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLV 513
           +++N VV +F +GD  H +++ + + L ++ ++ K+ GY  D S V
Sbjct: 519 VQINGVVHDFVAGDWTHKHASSVYEMLSKITRQAKLEGYKLDISEV 564


>gi|302793743|ref|XP_002978636.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
 gi|300153445|gb|EFJ20083.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
          Length = 438

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 170/396 (42%), Positives = 248/396 (62%), Gaps = 1/396 (0%)

Query: 163 TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK 222
            T+++ +A+  ++  A RIF       +  +NA+I AY +     +A+ LF EL  R ++
Sbjct: 4   VTVLSAFAKVGNLHLAARIFARTDRSYIFPWNAMIAAYVQHGDSRQAIRLFDELLARRIE 63

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
           P  VT++  L +CA L +L  GK +H   + +G+D  V V TA++DM++KCG LD+AV  
Sbjct: 64  PNSVTLMEVLDACASLAALRDGKRVHAIARDHGVDSEVAVATAIVDMYSKCGCLDEAVEA 123

Query: 283 FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342
           F  +   DT +W+AM+ A+A HG   +++  F+ M +    P+ +TF+ LL ACSH GLV
Sbjct: 124 FARIERHDTVSWTAMLAAFAQHGHIDRALATFQRMQEQGHKPNYVTFVHLLSACSHKGLV 183

Query: 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
           +EG  YF  M  +YGI P  +HY CMVDLLGRAG LDEA  F++ +P      + ++LLS
Sbjct: 184 EEGRKYFDLMTARYGIAPDAQHYACMVDLLGRAGYLDEAEDFLNRMPGAPHAAVLKSLLS 243

Query: 403 SCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKV 462
           +C S+ ++   +++ +R+ E        YV+L+++   AG+WE+   +R LM +RGV K 
Sbjct: 244 ACRSYKDVDRGERIAKRMLESFWDESMPYVVLASIYRAAGKWEEAARIRSLMVERGVRKD 303

Query: 463 PGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEE 522
           PG S+IEV   V EF +GD  H     ++  L EL   +K  GYVPDTSLV H D+ +EE
Sbjct: 304 PGRSAIEVEGRVFEFVAGDMSHVQMNPIRAKLQELSSAMKEAGYVPDTSLVLH-DVAEEE 362

Query: 523 KEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           KE  L +HSEKLA+ FGLLNTP G+ IRV+KNLRVC
Sbjct: 363 KEQVLLWHSEKLAVAFGLLNTPAGSPIRVIKNLRVC 398



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 116/231 (50%), Gaps = 3/231 (1%)

Query: 59  LINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118
           L+   +      ++  A  +F R     I  +N M   Y +     +AI LF ELL   +
Sbjct: 3   LVTVLSAFAKVGNLHLAARIFARTDRSYIFPWNAMIAAYVQHGDSRQAIRLFDELLARRI 62

Query: 119 LPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAA 178
            P+  +   +L ACA + A  L +GK++H  A   G++S + V T ++++Y++C  ++ A
Sbjct: 63  EPNSVTLMEVLDACASLAA--LRDGKRVHAIARDHGVDSEVAVATAIVDMYSKCGCLDEA 120

Query: 179 RRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL 238
              F  I     VS+ A++ A+A+    + AL+ F+ +QE+  KP  VT +  LS+C+  
Sbjct: 121 VEAFARIERHDTVSWTAMLAAFAQHGHIDRALATFQRMQEQGHKPNYVTFVHLLSACSHK 180

Query: 239 GSLDLG-KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG 288
           G ++ G K+      +YG+    +    ++D+  + G LD+A    + M G
Sbjct: 181 GLVEEGRKYFDLMTARYGIAPDAQHYACMVDLLGRAGYLDEAEDFLNRMPG 231



 Score = 42.7 bits (99), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 11/130 (8%)

Query: 22  PNALSL---LPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PN+++L   L  C S   L   K++HA+     + +++ V T +++  ++      ++ A
Sbjct: 64  PNSVTLMEVLDACASLAALRDGKRVHAIARDHGVDSEVAVATAIVDMYSK---CGCLDEA 120

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
              F RI   D V +  M   +++     RA+  F  +   G  P+  +F  LL AC+  
Sbjct: 121 VEAFARIERHDTVSWTAMLAAFAQHGHIDRALATFQRMQEQGHKPNYVTFVHLLSACSHK 180

Query: 136 GAEALEEGKQ 145
           G   +EEG++
Sbjct: 181 G--LVEEGRK 188


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 192/528 (36%), Positives = 292/528 (55%), Gaps = 38/528 (7%)

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN-SGLLPDDYS 124
           N     M+ A  LF+ +P+  IV +N M  GY+++    +A+ LF  +L+ S + PD+++
Sbjct: 240 NTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFT 299

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
             S+L ACA +G   +  GKQ+H + ++  +  N  V   LI+ YA+   VE ARRI + 
Sbjct: 300 ITSVLSACANLGN--VRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQ 357

Query: 185 ISEPC---------------------------------VVSYNAIITAYARSSRPNEALS 211
             E                                   VV++ A+I  Y ++ R +EA+ 
Sbjct: 358 SMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAID 417

Query: 212 LFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271
           LFR +     +P   T+ + LS CA L  LD GK IH    +  L++   V+ A+I M+A
Sbjct: 418 LFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYA 477

Query: 272 KCGRLDDAVSVFDNMSG-KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           + G    A  +FD +   K+T  W++MIVA A HGQG +++ +FEEM++A V PD IT++
Sbjct: 478 RSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYV 537

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
           G+L ACSH G V+EG  Y+  +++++ I P + HY CMVDLL RAG   EA  FI  +P+
Sbjct: 538 GVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPV 597

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL 450
           +   I W +LLS+C  H N  LA+   E++  +D ++ G Y  ++N+ +  GRW D   +
Sbjct: 598 EPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARI 657

Query: 451 RKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT 510
            K  K++ V K  G S   + + +  F + D VH     +      + +E+K  G+VPD 
Sbjct: 658 WKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDL 717

Query: 511 SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             V H D++DE KE  L  HSEKLAI FGL++TP  TT+RV+KNLRVC
Sbjct: 718 QSVLH-DVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVC 764



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 147/315 (46%), Gaps = 72/315 (22%)

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSD----VEAARRIFENI--SEPCVVSYNAI 196
           G+ +H  A+K GL ++ Y+C  L++ Y E +     +  ARR+F+ I  +   V ++N++
Sbjct: 45  GRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNSL 104

Query: 197 ITAYARSSRPNEALSLFRELQERN-------------------------------LKPTD 225
           ++ +A+S R  +A  +F E+ ER+                                 PT 
Sbjct: 105 LSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQ 164

Query: 226 VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC------------ 273
            T+ + LSSCA+  +  +G+ +H ++ K GL   V V  ++++M+ KC            
Sbjct: 165 FTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFER 224

Query: 274 -------------------GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
                              GR+D A S+F++M  +   +W+AMI  Y  +G   K++ +F
Sbjct: 225 MPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLF 284

Query: 315 EEMM-KAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLL 372
             M+ ++ ++PDE T   +L AC++ G V  G   + Y +R +      + +   ++   
Sbjct: 285 SRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALISTY 342

Query: 373 GRAGRLDEAYRFIDE 387
            ++G ++ A R +D+
Sbjct: 343 AKSGSVENARRIMDQ 357



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 132/273 (48%), Gaps = 6/273 (2%)

Query: 49  LQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIF 108
           ++ DLNV++              ME A  +F  +   D+V +  M  GY ++     AI 
Sbjct: 359 METDLNVIS-FTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAID 417

Query: 109 LFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINL 168
           LF  ++  G  P+ Y+  ++L  CA +    L+ GKQ+HC AI+  L  +  V   +I +
Sbjct: 418 LFRSMITCGPEPNSYTLAAVLSVCASLAC--LDYGKQIHCRAIRSLLEQSSSVSNAIITM 475

Query: 169 YAECSDVEAARRIFENIS-EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT 227
           YA       ARR+F+ +      +++ ++I A A+  +  EA+ LF E+    ++P  +T
Sbjct: 476 YARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRIT 535

Query: 228 MLSALSSCALLGSLDLGKWIHEYIK-KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
            +  LS+C+  G ++ GK  ++ IK ++ +   +     ++D+ A+ G   +A      M
Sbjct: 536 YVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRM 595

Query: 287 SGK-DTQAWSAMIVAYATHGQGHKSILMFEEMM 318
             + D  AW +++ A   H     + L  E+++
Sbjct: 596 PVEPDAIAWGSLLSACRVHKNAELAELAAEKLL 628


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 162/331 (48%), Positives = 225/331 (67%), Gaps = 1/331 (0%)

Query: 228 MLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS 287
           M   L +CA + +L+ GK +H  I K G +  V V+  L+DM+ KCGR++DA  VF  + 
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 288 GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN 347
             D  +W+AMI   A HG G +++L+FE+M++  V P++ITF+ +L  CSH GLVDEG N
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
           YF SM   +GI P  +HY CMVDL GRAG LDEA  FI+++P++    +W +LL +C  H
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSS 467
            N+ LA++ +E++ EL   + G YV+LSN+ A AGRW+D   +RK+MKDR V K PGCS 
Sbjct: 181 GNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSW 240

Query: 468 IEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIAL 527
           IEV N V  F  GD  H    ++ + L+ L  ++K  GY+P+T+ V H D+E+E+KE  L
Sbjct: 241 IEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLH-DVEEEQKEWIL 299

Query: 528 RYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            +HSEKLAI FG+++TPPGTTIRVVKNLRVC
Sbjct: 300 GHHSEKLAIAFGIISTPPGTTIRVVKNLRVC 330



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 122/232 (52%), Gaps = 7/232 (3%)

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS 186
            +L+ACA V A  LE+GKQ+H   IK+G   ++ V   L+++Y +C  +E A+ +F  + 
Sbjct: 3   GILRACASVAA--LEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 187 EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK- 245
           EP V S+NA+I+  A+     EA+ LF ++ +  +KP  +T +  LS C+  G +D G+ 
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATH 304
           +     + +G+    +  + ++D+  + G LD+A++  + M  + +   W +++ A   H
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 305 GQGHKSILMFEEMMK-AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355
           G    +    E++++    +P     L  +YA +  G  D+       M+D+
Sbjct: 181 GNIELAERAVEQLIELTPENPGTYVLLSNIYAAA--GRWDDAGKVRKMMKDR 230



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 114/278 (41%), Gaps = 58/278 (20%)

Query: 26  SLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
            +L  C S   L   KQ+HA  IK   + D++V   L++   +      +E A  +F ++
Sbjct: 3   GILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGK---CGRIEDAQEVFSKL 59

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
            EPD+  +N M  G ++      A+ LF ++L +G+ P+  +F  +L  C+  G      
Sbjct: 60  LEPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGL----- 114

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE-----PCVVSYNAII 197
                                           V+  R  F++++      P    Y+ ++
Sbjct: 115 --------------------------------VDEGRNYFDSMTRDHGISPKAEHYSCMV 142

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD 257
             + R+   +EAL+   ++    ++P      S L +C + G+++L +   E + +   +
Sbjct: 143 DLFGRAGCLDEALNFINQMP---VEPNASVWGSLLGACRVHGNIELAERAVEQLIELTPE 199

Query: 258 K---YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ 292
               YV     L +++A  GR DDA  V   M  +  +
Sbjct: 200 NPGTYV----LLSNIYAAAGRWDDAGKVRKMMKDRSVK 233


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 168/396 (42%), Positives = 247/396 (62%), Gaps = 1/396 (0%)

Query: 163 TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK 222
           +TLI+ +A+  D++ A  +F+ + E  VVS+  ++  ++R+    +ALS+F ++ E  ++
Sbjct: 285 STLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVR 344

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
           P   T++SALS+CA +G L+ G  IH+YIK  GL     + TAL+DM+AKCG ++ A  V
Sbjct: 345 PNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEV 404

Query: 283 FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342
           F     K  + W+ MI  +A HG   ++I  F++MM A + PDE+ FL LL AC H+G V
Sbjct: 405 FGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQV 464

Query: 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
           D G N+F SMR  Y I P +KHY  +VD+LGR+G+L EA RFI+ +P+    ++W  L  
Sbjct: 465 DIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFC 524

Query: 403 SCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKV 462
           +C +H    +AK  + ++ +L+ +H G+Y+ LSN  A  G+WED + +R LM++RGV K 
Sbjct: 525 ACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALGQWEDAERVRVLMQNRGVHKN 584

Query: 463 PGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEE 522
            G S IEV   V  F SGD  H  S  +   L+E++      GY+P T  V H +ME EE
Sbjct: 585 SGWSCIEVEGQVHRFVSGDHDHKDSKAICLKLEEIMAGAVKQGYIPGTEWVLH-NMEQEE 643

Query: 523 KEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           KE  L  H EKLA+ F L+ T PG TIR+VKNL+VC
Sbjct: 644 KEDVLGSHGEKLALAFALICTSPGMTIRIVKNLQVC 679



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 136/252 (53%), Gaps = 4/252 (1%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           M+ A  LFD++PE ++V + TM  G+SR+    +A+ +F ++L  G+ P+ ++  S L A
Sbjct: 297 MDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSA 356

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           CA +G   LE G ++H +    GL+    + T L+++YA+C ++E+A  +F    +  + 
Sbjct: 357 CAKIGG--LEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIR 414

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           ++  +I  +A      +A++ F+++    +KP +V  L+ L++C   G +D+G    + +
Sbjct: 415 TWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSM 474

Query: 252 K-KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS-GKDTQAWSAMIVAYATHGQGHK 309
           +  Y ++  +K  T ++DM  + G+L +A+   + M    D   W A+  A   H +   
Sbjct: 475 RLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKM 534

Query: 310 SILMFEEMMKAQ 321
           +     +++K +
Sbjct: 535 AKFALNKLLKLE 546



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 157/386 (40%), Gaps = 64/386 (16%)

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
           P P  +         ++ K+ + A+F+          P +  F SL+      G++ + +
Sbjct: 48  PNPPEITTTISKTSENKPKSSLSALFI------PPTTPTEAHFISLIH-----GSKTILQ 96

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
             Q+H   I   L+S+  + T LI+  +    +  +  +F +     + ++NA+I     
Sbjct: 97  LHQIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTT 156

Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG--LDKYV 260
           +S    A+  FR +    +KP  +T    L S A L S +LG  IH  I + G  LD +V
Sbjct: 157 NSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFV 216

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNM-----SGKDTQAWSAMIVAYATHGQGHKSILMFE 315
           +V  +L+DM+ K  +L  A  VFD       SG     W+ +I      G   K++ +F+
Sbjct: 217 RV--SLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFK 274

Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375
            M K +                     +  W+                    ++D   + 
Sbjct: 275 AMPKKE---------------------NVSWS-------------------TLIDGFAKN 294

Query: 376 GRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435
           G +D A    D++P K+  + W T++   S + +   A  +  ++ E +      + I+S
Sbjct: 295 GDMDRAMELFDQMPEKNV-VSWTTMVDGFSRNGDSEKALSMFSKMLE-EGVRPNAFTIVS 352

Query: 436 NL--CARAGRWEDVDYLRKLMKDRGV 459
            L  CA+ G  E    + K +KD G+
Sbjct: 353 ALSACAKIGGLEAGLRIHKYIKDNGL 378


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 200/583 (34%), Positives = 307/583 (52%), Gaps = 66/583 (11%)

Query: 9   ITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTH-LQNDLNVLTKLINFCTQNP 67
           IT +     CTN    LSLL      R  ++IH   IK   L +DL V   L+++  +  
Sbjct: 363 ITIASAVSACTN----LSLL------RHGREIHGYCIKVEELDSDLLVGNSLVDYYAK-- 410

Query: 68  TTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPS 127
              S+E A   F  I + D+V +N M  GY+   +   AI L  E+   G+ PD  ++  
Sbjct: 411 -CRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNG 469

Query: 128 LLKA---------------------------------CACVGAEALEEGKQLHCFAIKLG 154
           L+                                    AC     L+ GK++H + ++  
Sbjct: 470 LVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNH 529

Query: 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214
           +  +  V + LI++Y+ C  +E A  +F  +S   VV +N+II+A A+S R   AL L R
Sbjct: 530 IELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLR 589

Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
           E+   N++   VTM+SAL +C+ L +L  GK IH++I + GLD    +  +LIDM+ +CG
Sbjct: 590 EMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCG 649

Query: 275 RLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334
            +  +  +FD M  +D  +W+ MI  Y  HG G  ++ +F+      + P+ ITF  LL 
Sbjct: 650 SIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLS 709

Query: 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
           ACSH+GL++EGW YF  M+ +Y + P ++ Y CMVDLL RAG+ +E   FI+++P +   
Sbjct: 710 ACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNA 769

Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454
            +W +LL +C  H N  LA+     +FEL+    G+YV+++N+ + AGRWED   +R LM
Sbjct: 770 AVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLM 829

Query: 455 KDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVH 514
           K+RGV K PGCS IEV   +  F  GD  H     +     +L                 
Sbjct: 830 KERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISGKDGKL----------------- 872

Query: 515 HGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRV 557
             D++++EKE +L  HSEK+A+ FGL++T  GT +R++KNLRV
Sbjct: 873 --DVDEDEKEFSLCGHSEKIALAFGLISTTXGTPLRIIKNLRV 913



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 127/530 (23%), Positives = 226/530 (42%), Gaps = 104/530 (19%)

Query: 26  SLLPRCTSFRGLK---QIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
           S+L +C     L+   Q+HA  +   +     + ++L+    Q   T  +E A  +FD++
Sbjct: 94  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQ---TGCVEDARRMFDKM 150

Query: 83  PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
            E ++  +  +   Y         I LF  ++N G+ PD + FP + KAC+ +  +    
Sbjct: 151 SERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSEL--KNYRV 208

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS---------------- 186
           GK ++ + + +G   N  V  ++++++ +C  ++ ARR FE I                 
Sbjct: 209 GKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTS 268

Query: 187 -------------------EPCVVSYNAIITAYARSS------------------RPN-- 207
                              +P  V++NAII+ YA+S                   +PN  
Sbjct: 269 KGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVV 328

Query: 208 ----------------EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY- 250
                           EALS+FR++    +KP  +T+ SA+S+C  L  L  G+ IH Y 
Sbjct: 329 SWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYC 388

Query: 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310
           IK   LD  + V  +L+D +AKC  ++ A   F  +   D  +W+AM+  YA  G   ++
Sbjct: 389 IKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEA 448

Query: 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370
           I +  EM    + PD IT+ GL+   +  G       +F  M    G+ P        + 
Sbjct: 449 IELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHS-MGMDPNTTTISGALA 507

Query: 371 LLGRAGRL---DEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
             G+   L    E + ++    I+ +  +   L+S  S  ++L +A  V   +       
Sbjct: 508 ACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSEL------S 561

Query: 428 GGDYVILSNL---CARAGRWED-VDYLRKLMKDRGVLKVPGCSSIEVNNV 473
             D V+ +++   CA++GR  + +D LR++            S++EVN V
Sbjct: 562 TRDVVVWNSIISACAQSGRSVNALDLLREM----------NLSNVEVNTV 601



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 179/407 (43%), Gaps = 33/407 (8%)

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
           + S+L+ C  +    L  G Q+H   +  G++   ++ + L+ +Y +   VE ARR+F+ 
Sbjct: 92  YASILQKCRKL--YNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDK 149

Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
           +SE  V S+ AI+  Y       E + LF  +    ++P          +C+ L +  +G
Sbjct: 150 MSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVG 209

Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
           K +++Y+   G +    V  +++DM  KCGR+D A   F+ +  KD   W+ M+  Y + 
Sbjct: 210 KDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSK 269

Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364
           G+  K++    +M  + V PD++T+  ++   + +G  +E   YF  M       P +  
Sbjct: 270 GEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVS 329

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE------ 418
           +  ++    + G   EA     ++ ++       T+ S+ S+  NL L +   E      
Sbjct: 330 WTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCI 389

Query: 419 RIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFF 478
           ++ ELD     D ++ ++L     +   V+  R+     G++K     S    N +   +
Sbjct: 390 KVEELDS----DLLVGNSLVDYYAKCRSVEVARRKF---GMIKQTDLVSW---NAMLAGY 439

Query: 479 SGDGVHSYSTDLQKALDELVKELKMVGYVPD--------TSLVHHGD 517
           +  G H  +        EL+ E+K  G  PD        T    +GD
Sbjct: 440 ALRGSHEEAI-------ELLSEMKFQGIEPDIITWNGLVTGFTQYGD 479


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 177/491 (36%), Positives = 287/491 (58%), Gaps = 15/491 (3%)

Query: 72  MEHAHLLFDRIPEPDIVLFNT----MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPS 127
           ++ A  +FD +P  ++V + T    +A    R +  +R     V +   G+ P+ Y+F S
Sbjct: 120 LDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALR---FLVAMRRDGVAPNAYTFSS 176

Query: 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE 187
           +L AC   G         +H   +K GL+S+++V ++LI+ Y +  D++  RR+F+ +  
Sbjct: 177 VLGACTTPGMLT-----AVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVT 231

Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
             +V +N+II  +A+S     A+ LF  +++        T+ S L +C  +  L+ G+ +
Sbjct: 232 RDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQV 291

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQG 307
           H ++ KY  D+ + ++ AL+DM+ KCG L+DA ++F  M  +D  +WS M+   A +G+ 
Sbjct: 292 HAHVLKY--DRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKS 349

Query: 308 HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367
            +++ +F+ M    V+P+ +T +G+L+ACSH GLV++GW+YF SM+  +GI P  +H+ C
Sbjct: 350 VEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPEREHHNC 409

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
           MVDLLGRAG+LDEA  FI  + ++   ++WRTLL +C  H N  LA      I +L+   
Sbjct: 410 MVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYAAREILKLEPDD 469

Query: 428 GGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYS 487
            G  V+LSN  A   +W D +   K M+DRG+ K PG S IE+   V  F +GD  H  S
Sbjct: 470 QGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKRVHVFIAGDLSHPCS 529

Query: 488 TDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGT 547
             + + L+ L+  +K +GYVP T  V   D+  E+KE  L+YHSEK+AI FG ++   G 
Sbjct: 530 DTIIQELNRLIGRIKSLGYVPQTEFVLQ-DLPTEQKEDLLKYHSEKMAIVFGTMHAVDGK 588

Query: 548 TIRVVKNLRVC 558
            IR++KNLR+C
Sbjct: 589 PIRIMKNLRIC 599



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 164/311 (52%), Gaps = 14/311 (4%)

Query: 21  TPNAL---SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHL 77
            PNA    S+L  CT+   L  +HA T+K  L +D+ V + LI+   +      ++    
Sbjct: 168 APNAYTFSSVLGACTTPGMLTAVHASTVKAGLDSDVFVRSSLIDAYVK---LGDLDGGRR 224

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137
           +FD +   D+V++N++  G+++S   + AI LF+ + ++G   +  +  S+L+  AC G 
Sbjct: 225 VFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLR--ACTGM 282

Query: 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII 197
             LE G+Q+H   +K   + +L +   L+++Y +C  +E A  +F  + +  V+S++ ++
Sbjct: 283 VMLEAGRQVHAHVLK--YDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMV 340

Query: 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK-YGL 256
           +  A++ +  EAL +F  ++ + + P  VTM+  L +C+  G ++ G      +K+ +G+
Sbjct: 341 SGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGI 400

Query: 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHGQGHKSILMFE 315
               + +  ++D+  + G+LD+AV     MS + D+  W  ++ A   H     +     
Sbjct: 401 QPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYAAR 460

Query: 316 EMMKAQVSPDE 326
           E++K  + PD+
Sbjct: 461 EILK--LEPDD 469



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 162/351 (46%), Gaps = 25/351 (7%)

Query: 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL-----NSNLYVCTTLINLYAECSDV 175
           D  S   L+K C   G    + G+ +H      G         L+V  +L ++YA+   +
Sbjct: 63  DPVSLTRLVKLCVRHGTA--DHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLL 120

Query: 176 EAARRIFENISEPCVVSYNAIITAYARS-SRPNEALSLFRELQERNLKPTDVTMLSALSS 234
           + A R+F+ +    VV++  ++ A A +  R  EAL     ++   + P   T  S L +
Sbjct: 121 DDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGA 180

Query: 235 CALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAW 294
           C   G L     +H    K GLD  V V ++LID + K G LD    VFD M  +D   W
Sbjct: 181 CTTPGMLTA---VHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVW 237

Query: 295 SAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD 354
           +++I  +A  G G  +I +F  M  A  S ++ T   +L AC+   +++ G    ++   
Sbjct: 238 NSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAG-RQVHAHVL 296

Query: 355 KYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAK 414
           KY     +  +  ++D+  + G L++A      +P +   I W T++S  + +   G + 
Sbjct: 297 KYD--RDLILHNALLDMYCKCGSLEDADALFHRMPQRDV-ISWSTMVSGLAQN---GKSV 350

Query: 415 QVIERIFELDDSHG--GDYVILSNL---CARAGRWED-VDYLRKLMKDRGV 459
           + + R+F+L  S G   ++V +  +   C+ AG  ED   Y R + +  G+
Sbjct: 351 EAL-RVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGI 400



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 99/215 (46%), Gaps = 20/215 (9%)

Query: 19  TNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLIN-FCTQNPTTSSMEH 74
           +N     S+L  CT    L   +Q+HA  +K     DL +   L++ +C       S+E 
Sbjct: 267 SNQGTLTSVLRACTGMVMLEAGRQVHAHVLK--YDRDLILHNALLDMYCK----CGSLED 320

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  LF R+P+ D++ ++TM  G +++   + A+ +F  + + G+ P+  +   +L AC+ 
Sbjct: 321 ADALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSH 380

Query: 135 VGAEALEEGKQLHCF-AIK--LGLNSNLYVCTTLINLYAECSDVEAARRIFENIS-EPCV 190
            G   +E+G   H F ++K   G+         +++L      ++ A      +S EP  
Sbjct: 381 AG--LVEDG--WHYFRSMKRLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDS 436

Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTD 225
           V +  ++ A       N +L+ +   +   L+P D
Sbjct: 437 VIWRTLLGAC--RMHKNASLAAYAAREILKLEPDD 469


>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 537

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 191/522 (36%), Positives = 294/522 (56%), Gaps = 34/522 (6%)

Query: 12  SPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSS 71
           S   K   ++   LSLL +C +   +KQI +    +    D     ++I+FC  +     
Sbjct: 4   SVGSKYLKSSRRVLSLLDQCVTMAHIKQIQSHLTVSGTLFDPFAAGRIISFCAVSAQ-GD 62

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           + HA+LLF  +P     ++NTM R ++  K P   + L+  +L++G LP++Y+F  LL+A
Sbjct: 63  ISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQA 122

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN------- 184
           CA +    L  G  LH  A++LG  +  +V   L++LYA C+ +++ARR+F+        
Sbjct: 123 CAQL--SDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVV 180

Query: 185 ------------------------ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN 220
                                   + E   VS++A+IT YA+     EAL LF ++Q   
Sbjct: 181 TWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAG 240

Query: 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV 280
            +P    ++ AL++CA LG+LD G+WIH Y+ +  +     + TALIDM+AKCG ++ A 
Sbjct: 241 FRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETAC 300

Query: 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG 340
            VFD M  +D  A++++I   A HG    +I MF  M    V P+E+TF+ LL ACS  G
Sbjct: 301 RVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVG 360

Query: 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400
           LV+EG   F SM + YGI P ++HYGC+VDLLGRAG L++A R + E+P++    +   L
Sbjct: 361 LVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGAL 420

Query: 401 LSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460
           L++C  H ++ L K+ +E + E    HGG +V+LSN+ A A +WEDV  +RK M+++ V 
Sbjct: 421 LNACRVHGDVELGKETVECLAERSLDHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVK 480

Query: 461 KVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
           KVPGCS IEV+  V EF +GD  H +  ++   L  + K LK
Sbjct: 481 KVPGCSLIEVDGAVFEFVAGDMSHVFMDEIVLLLLGIDKHLK 522


>gi|449450898|ref|XP_004143199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Cucumis sativus]
          Length = 603

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 195/535 (36%), Positives = 307/535 (57%), Gaps = 9/535 (1%)

Query: 28  LPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDI 87
           L  C         H++ +K    N+   +  LIN   +     S+  AH LFD +P P++
Sbjct: 34  LRNCNDLISSISTHSIALKLGFLNNTVNVNHLINCYVR---FRSIATAHQLFDEMPNPNV 90

Query: 88  VLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLH 147
           V + ++  GY  +  P  A+FLF E+L S ++P+D++F + +KAC+ +    L  G+  H
Sbjct: 91  VSWTSLMAGYVDNGQPSTALFLFGEMLRSPVVPNDFTFATAIKACSIL--SNLRHGEMFH 148

Query: 148 CFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPN 207
                 G   N+ VC++LI++Y +C+DV  AR +F ++S   +VS+ ++I AYA+++  +
Sbjct: 149 AHVEIFGYGGNIVVCSSLIDMYGKCNDVVKARGVFNSMSCKNIVSWTSMIAAYAQNAHGD 208

Query: 208 EALSLFRELQERNLK-PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
           EAL +FRE    + + P    + S +S+CA LG L  GK +H      G D    V + L
Sbjct: 209 EALKVFREFTSLSSEHPNPYMLASVISACASLGRLVSGKVMHGAAISLGCDSSEVVASVL 268

Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE 326
           +DM+AKCG LD +  VF+ +S      +++MIV+ A +G G KS+ +FEEM++  + P+ 
Sbjct: 269 VDMYAKCGSLDYSDKVFNRISNPSVIPYTSMIVSTAKYGFGRKSLQLFEEMVRKGLKPNH 328

Query: 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFID 386
           IT +G+L+ACSH+GL +EG  Y  SM +KYGI+P  KHY C+VD+L R G LD+A+    
Sbjct: 329 ITLVGVLHACSHSGLPNEGLYYLTSMYEKYGIMPETKHYTCVVDMLARVGELDKAFDLAK 388

Query: 387 ELPIK--STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444
            + +      +LW  LLS+   H  + +A +  +++   +    G YV LSN+ A AG  
Sbjct: 389 SMDVAPDDKALLWGALLSASRCHGRVDIAAEACQQLVNSNRQVAGAYVTLSNVYASAGDM 448

Query: 445 EDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTD-LQKALDELVKELKM 503
           E    LR  MK  GV K PGCS IE+ +    F++G+       D +   L EL +++K 
Sbjct: 449 EKAHKLRVEMKRTGVHKEPGCSWIEIKDSSYIFYAGEITSCPRGDEVLCLLRELDQKMKD 508

Query: 504 VGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            GYV     +   D+E+E +E  +  HSE+LA+ FGL++ P G TIR++KNLR+C
Sbjct: 509 RGYVRGRKGLVFVDIEEEAEEEKVWLHSERLALGFGLISIPKGLTIRIMKNLRMC 563


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 180/523 (34%), Positives = 305/523 (58%), Gaps = 10/523 (1%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           +Q+H++ ++  L +D  V   L++  T+     SME A  +F R+P  +++ +  +  GY
Sbjct: 269 QQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGY 328

Query: 98  SR-SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
            +       A+ L  E+LN  + P+  ++ SLLKACA +  +  + G+Q+H   +K  + 
Sbjct: 329 VQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQ--DSGRQIHARVMKTSIG 386

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
           +   V   L+++YAE   +E AR+ F+ + E  ++S ++ I    RS+      S   ++
Sbjct: 387 NVNVVGNALVSMYAESGCMEEARKAFDQLYERNLLSTSSDIGETGRSN-----ASWSSQI 441

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           +  ++  +  T  S LS+ A +G    G+ +H    K G +    ++ +L+ M+++CG L
Sbjct: 442 ESMDVGVSTFTFASLLSAAATVGLPTKGQQLHALSIKTGFESDKGISNSLVSMYSRCGYL 501

Query: 277 DDAVSVFDNMSG-KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
           DDA   FD M    +  +W+++I A A HG   +++ +F +M+ + V P+++T++ +L A
Sbjct: 502 DDACRAFDEMEDDHNVISWTSIISALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLSA 561

Query: 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
           CSH GLV EG  YF SM+  + ++P ++HY CMVDLL R+G + EA  FI+E+P K+  +
Sbjct: 562 CSHVGLVKEGKEYFRSMQKDHRLIPRMEHYACMVDLLARSGLVQEALEFINEMPCKADAL 621

Query: 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455
           +W+TLL +C ++ N+ + +     + +L+      YV+LSNL A  G W++V  +R LM+
Sbjct: 622 VWKTLLGACRTYENIEIGEIAARHVIDLEPQDPAPYVLLSNLYAHGGLWDEVARIRSLMR 681

Query: 456 DRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHH 515
            R + K  G S + V N + EF +GD  H  + ++   L  L++E+K +GYVPDTS+V H
Sbjct: 682 HRNLSKETGLSWMHVGNTIHEFRAGDTSHPRAQEIYAKLAVLIREIKDIGYVPDTSIVLH 741

Query: 516 GDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            DM D+ KE  L  HSEK+A+ FGL+ T P   IR+ KNLRVC
Sbjct: 742 -DMSDKLKEQCLLQHSEKIAVAFGLITTLPTKPIRIFKNLRVC 783



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 197/443 (44%), Gaps = 27/443 (6%)

Query: 86  DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
           D+V +  MA   +R+     A+ L  E+L SGL P+ ++  +   AC   G      G  
Sbjct: 110 DLVSWTAMAFCLTRNGAEQEALVLLGEMLESGLRPNAFTLCAAAHACF-PGELFRSSGGT 168

Query: 146 LHCFAIKLGL-NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204
           +  FAIK G   +++ V   LI+++A   D+ AAR++F  + E  VV +  +IT Y +  
Sbjct: 169 VLGFAIKTGFWGTDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGG 228

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT 264
              +A+ LF  + E   +P   TM S +S+CA  GS  LG+ +H  + + GL     V+ 
Sbjct: 229 CAGKAVELFLGMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSC 288

Query: 265 ALIDMHAKC---GRLDDAVSVFDNMSGKDTQAWSAMIVAYAT-HGQGHKSILMFEEMMKA 320
            L+DM+ K      ++ A  VF  M   +  +W+A+I  Y    GQ + ++ +  EM+  
Sbjct: 289 GLVDMYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNE 348

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
            + P+ +T+  LL AC++    D G   +   M+   G V  + +   +V +   +G ++
Sbjct: 349 SIEPNHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGN--ALVSMYAESGCME 406

Query: 380 EAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439
           EA +  D+L         R LLS+ S     G +        E  D     +   S L A
Sbjct: 407 EARKAFDQL-------YERNLLSTSSDIGETGRSNASWSSQIESMDVGVSTFTFASLLSA 459

Query: 440 RA--GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDEL 497
            A  G       L  L    G     G     ++N +   +S  G   Y  D  +A DE+
Sbjct: 460 AATVGLPTKGQQLHALSIKTGFESDKG-----ISNSLVSMYSRCG---YLDDACRAFDEM 511

Query: 498 VKELKMVGYVPDTS-LVHHGDME 519
             +  ++ +    S L  HG  E
Sbjct: 512 EDDHNVISWTSIISALAKHGHAE 534


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 186/535 (34%), Positives = 303/535 (56%), Gaps = 7/535 (1%)

Query: 24  ALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           ALS   R    RG + +         ++D+ V + L++   +     +M  A  +F R+P
Sbjct: 114 ALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYAR---WGAMGDAVKVFVRMP 170

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
             D V ++TM  G+  +  P+ AI ++  +   G+  D+     +++AC    A  +  G
Sbjct: 171 RRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQAC--TAARNVRMG 228

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
             +H   ++ G+  ++   T+L+++YA+   ++ A R+F  +     VS++A+I+ +A++
Sbjct: 229 ASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQN 288

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
            + +EAL LFR +Q   ++P    ++SAL +C+ +G L LG+ +H +I +   D    + 
Sbjct: 289 GQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCILG 347

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
           TA IDM++KCG L  A  +F+ +S +D   W+AMI     HG+G  ++ +F+EM +  + 
Sbjct: 348 TAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMR 407

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
           PD  TF  LL A SH+GLV+EG  +F  M + + I P  KHY C+VDLL R+G ++EA  
Sbjct: 408 PDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASD 467

Query: 384 FIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443
            +  +  + T  +W  LLS C ++  L L + + + I EL     G   ++SNL A   +
Sbjct: 468 LLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKK 527

Query: 444 WEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKM 503
           W+ V  +RKLMKD G  K+PGCSSIE+      F   D  H    ++   + +L  E++ 
Sbjct: 528 WDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRK 587

Query: 504 VGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +GY+P T  V+H D+E+E KE  L YHSE+LAI FGLLNT PGT + ++KNLRVC
Sbjct: 588 MGYIPRTEFVYH-DLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVC 641



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 160/318 (50%), Gaps = 16/318 (5%)

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           +SR  +P  A+ +F   L     PD  +F   L ACA +G   L  G+ +   A   G  
Sbjct: 84  HSRRGSPASALRVF-RALPPAARPDSTTFTLALSACARLGD--LRGGESVRDRAFDAGYK 140

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            +++VC++L++LYA    +  A ++F  +     V+++ ++  +  + +P +A+ ++R +
Sbjct: 141 DDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRM 200

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           +E  +K  +V M+  + +C    ++ +G  +H ++ ++G+   V   T+L+DM+AK G L
Sbjct: 201 REDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLL 260

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           D A  VF  M  ++  +WSAMI  +A +GQ  +++ +F  M  + + PD    +  L AC
Sbjct: 261 DVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLAC 320

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM-----VDLLGRAGRLDEAYRFIDELPIK 391
           S+ G +  G       R  +G +     + C+     +D+  + G L  A    + +  +
Sbjct: 321 SNIGFLKLG-------RSVHGFIVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDR 373

Query: 392 STPILWRTLLSSCSSHNN 409
              ILW  +++ C +H  
Sbjct: 374 DL-ILWNAMIACCGAHGR 390


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 189/544 (34%), Positives = 305/544 (56%), Gaps = 13/544 (2%)

Query: 22  PNALSLLPRCTSFRGL------KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PNA+++     +F  L      K +H   ++   + ++ V T L++  ++      M  A
Sbjct: 120 PNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSK---FGCMGVA 176

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
             LF+ + E ++V +N +  GYS       AI LF  +   GLL D Y+  SL+ A   V
Sbjct: 177 RQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSV 236

Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
           G   L+ G  +H F I+ G  ++ ++ T L+++Y   + V+ A R+F  +    V ++  
Sbjct: 237 GC--LQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTL 294

Query: 196 IITAYARSSRPNEALSLFRE-LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           ++T ++     + A+  F + L  +NLK   + ++  LSSC+  G+L  G+ +H    K 
Sbjct: 295 MLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKT 354

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
                + V +A+IDM+A CG L+DA   F  M  KD   W+AMI     +G G  +I +F
Sbjct: 355 CFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLF 414

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
            +M  + + PDE TF+ +LYACSH G+V EG   FY M      +P ++HY C++D+LGR
Sbjct: 415 LQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGR 474

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
           AG+LD AY FI+ +P +    ++ TLL +C  H N+ L  ++ ++IFE++ +  G YV+L
Sbjct: 475 AGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLL 534

Query: 435 SNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKAL 494
           SN+ A AG WE V   R  ++ + + K PG SSIE+N  +  F +G+  H     ++  L
Sbjct: 535 SNMYALAGNWEGVKMTRASLRSKRLKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGIL 594

Query: 495 DELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKN 554
             L+ ++K  GYVP+T+++   D+ D+ K+  L +HSEK+AI FGL+ T PGT IR+ KN
Sbjct: 595 KGLILKIKKAGYVPNTNVLLQ-DVSDDMKKDILYHHSEKMAIAFGLMRTKPGTIIRITKN 653

Query: 555 LRVC 558
           LR C
Sbjct: 654 LRTC 657



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 203/399 (50%), Gaps = 14/399 (3%)

Query: 9   ITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLIN---FCTQ 65
           ++ +P  +LC    +  S+L +    + L+QIHA  I + L ++  +   L+N   +C  
Sbjct: 12  LSSNPTQRLCPLAQSHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYC-- 69

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSF 125
                 +  A  +F   P  ++V +  +  G +++   + AI +F E+      P+  + 
Sbjct: 70  ----GLLADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTI 125

Query: 126 PSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185
            S+L A A +G   +   K +HCF ++ G   N++V T L+++Y++   +  AR++FE++
Sbjct: 126 SSVLPAFANLG--LIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESM 183

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245
           SE  VVS+NAI++ Y+      EA+ LF  ++ + L     T++S + +   +G L +G 
Sbjct: 184 SERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGT 243

Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
            IH +I + G +    + TAL+D++     +DDA  VF  M  KD  AW+ M+  +++  
Sbjct: 244 GIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGR 303

Query: 306 QGHKSILMFEEMMKAQ-VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364
              ++I  F +M+  Q +  D I  +G+L +CSH+G + +G    +++  K      I  
Sbjct: 304 HWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQG-RRVHALAIKTCFANNIFV 362

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403
              ++D+    G L++A RF   +  K   + W  +++ 
Sbjct: 363 GSAVIDMYANCGNLEDAKRFFYGMGEKDV-VCWNAMIAG 400



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 138/264 (52%), Gaps = 4/264 (1%)

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
           +Q+H   I  GL  N ++  +L+N Y  C  +  A++IF +     VVS+  +I+  A++
Sbjct: 41  QQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKN 100

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
               EA+ +FRE+   N KP  VT+ S L + A LG + + K +H +  + G +  V V 
Sbjct: 101 DCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVE 160

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
           TAL+DM++K G +  A  +F++MS ++  +W+A++  Y+ HG   ++I +F  M +  + 
Sbjct: 161 TALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLL 220

Query: 324 PDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
            D  T + L+ A    G +  G   + + +R  Y     IK    ++D+      +D+A+
Sbjct: 221 VDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIK--TALMDIYVSHNCVDDAH 278

Query: 383 RFIDELPIKSTPILWRTLLSSCSS 406
           R   E+ +K     W  +L+  SS
Sbjct: 279 RVFSEMFVKDVAA-WTLMLTGFSS 301


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 183/526 (34%), Positives = 298/526 (56%), Gaps = 7/526 (1%)

Query: 33  SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNT 92
           S RG+K++    I + L  D  +  +++     +     M  A  LFD +PE +I+ +NT
Sbjct: 146 SIRGVKKVFNYMINSGLDPDEYLRNRVL---LMHVKCGMMIDARRLFDEMPEKNILSWNT 202

Query: 93  MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
           +  G   +     A  LF+ +           F ++++A A +G   +  G+QLH  ++K
Sbjct: 203 IIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMFVTMIRASAGLGL--IFAGRQLHSCSLK 260

Query: 153 LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL 212
            G+  +++V   LI++Y++C  +E A+ +F+ + E   V +N+II  YA      EALS+
Sbjct: 261 TGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSM 320

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272
           + E+++  +K  + T    +  CA L SL+  K  H  + ++G    +  NTAL+D+++K
Sbjct: 321 YYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSK 380

Query: 273 CGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332
            GR++DA  VFD M  K+  +W+A+I  Y  HG+G +++ MFE M+   + P+ +TFL +
Sbjct: 381 WGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAV 440

Query: 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392
           L ACS++GL D GW  F SM   + I P   HY CM++LLGR G LDEA+  I + P K 
Sbjct: 441 LSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKP 500

Query: 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452
           T  +W  LL++C  H N  L K   E+++ +      +YV+L N+   +GR E+   + +
Sbjct: 501 TVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNXSGRLEEAAAVIQ 560

Query: 453 LMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSL 512
            +K RG+  +P CS IE+      F SGD  H+ S ++ + LDEL+ E+   GYVP    
Sbjct: 561 TLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKLDELMLEISKHGYVPQXKF 620

Query: 513 VHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +   D+ DE++E  L YHSEKLAI FGL+NT   T +++V++ R+C
Sbjct: 621 L-LPDV-DEQEERVLLYHSEKLAIAFGLINTSDWTPLQIVQSHRIC 664



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 154/308 (50%), Gaps = 4/308 (1%)

Query: 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
           LN     D  ++ +L+ AC  +G +++   K++  + I  GL+ + Y+   ++ ++ +C 
Sbjct: 123 LNGAYDMDSETYDALVSAC--IGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCG 180

Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
            +  ARR+F+ + E  ++S+N II     +    EA  LF  + +          ++ + 
Sbjct: 181 MMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMFVTMIR 240

Query: 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293
           + A LG +  G+ +H    K G+   V V  ALIDM++KCG ++DA  VFD M  K T  
Sbjct: 241 ASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVG 300

Query: 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353
           W+++I  YA HG   +++ M+ EM  + V  D  TF  ++  C+    ++      ++  
Sbjct: 301 WNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHA-KQAHAGL 359

Query: 354 DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413
            ++G    I     +VDL  + GR+++A    D +P K+  I W  L++   +H     A
Sbjct: 360 VRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNV-ISWNALIAGYGNHGRGVEA 418

Query: 414 KQVIERIF 421
            ++ ER+ 
Sbjct: 419 VEMFERML 426



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 113/246 (45%), Gaps = 10/246 (4%)

Query: 205 RPNEALSLFRELQERNLKPTDVTMLSAL-SSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
           R +EAL LF  L+       D     AL S+C  L S+   K +  Y+   GLD    + 
Sbjct: 110 RYHEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLR 169

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
             ++ MH KCG + DA  +FD M  K+  +W+ +I      G   ++  +F  M +    
Sbjct: 170 NRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSD 229

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
                F+ ++ A +  GL+  G    +S   K G+   +     ++D+  + G +++A  
Sbjct: 230 AGSRMFVTMIRASAGLGLIFAG-RQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQC 288

Query: 384 FIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS----HGGDYVILSNLCA 439
             D++P K+T + W ++++  + H   G +++ +   +E+ DS        + I+  +CA
Sbjct: 289 VFDQMPEKTT-VGWNSIIAGYALH---GYSEEALSMYYEMRDSGVKIDNFTFSIIIRICA 344

Query: 440 RAGRWE 445
           R    E
Sbjct: 345 RLASLE 350


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 186/535 (34%), Positives = 303/535 (56%), Gaps = 7/535 (1%)

Query: 24  ALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP 83
           ALS   R    RG + +         ++D+ V + L++   +     +M  A  +F R+P
Sbjct: 114 ALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYAR---WGAMGDAVKVFVRMP 170

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
             D V ++TM  G+  +  P+ AI ++  +   G+  D+     +++AC    A  +  G
Sbjct: 171 RRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQAC--TAARNVRMG 228

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
             +H   ++ G+  ++   T+L+++YA+   ++ A R+F  +     VS++A+I+ +A++
Sbjct: 229 ASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQN 288

Query: 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
            + +EAL LFR +Q   ++P    ++SAL +C+ +G L LG+ +H +I +   D    + 
Sbjct: 289 GQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCILG 347

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
           TA IDM++KCG L  A  +F+ +S +D   W+AMI     HG+G  ++ +F+EM +  + 
Sbjct: 348 TAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMR 407

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383
           PD  TF  LL A SH+GLV+EG  +F  M + + I P  KHY C+VDLL R+G ++EA  
Sbjct: 408 PDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASD 467

Query: 384 FIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443
            +  +  + T  +W  LLS C ++  L L + + + I EL     G   ++SNL A   +
Sbjct: 468 LLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKK 527

Query: 444 WEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKM 503
           W+ V  +RKLMKD G  K+PGCSSIE+      F   D  H    ++   + +L  E++ 
Sbjct: 528 WDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRK 587

Query: 504 VGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +GY+P T  V+H D+E+E KE  L YHSE+LAI FGLLNT PGT + ++KNLRVC
Sbjct: 588 MGYIPRTEFVYH-DLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVC 641



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 160/318 (50%), Gaps = 16/318 (5%)

Query: 97  YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
           +SR  +P  A+ +F   L     PD  +F   L ACA +G   L  G+ +   A   G  
Sbjct: 84  HSRRGSPASALRVF-RALPPAARPDSTTFTLALSACARLGD--LRGGESVRDRAFDAGYK 140

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
            +++VC++L++LYA    +  A ++F  +     V+++ ++  +  + +P +A+ ++R +
Sbjct: 141 DDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRM 200

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           +E  +K  +V M+  + +C    ++ +G  +H ++ ++G+   V   T+L+DM+AK G L
Sbjct: 201 REDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLL 260

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
           D A  VF  M  ++  +WSAMI  +A +GQ  +++ +F  M  + + PD    +  L AC
Sbjct: 261 DVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLAC 320

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM-----VDLLGRAGRLDEAYRFIDELPIK 391
           S+ G +  G       R  +G +     + C+     +D+  + G L  A    + +  +
Sbjct: 321 SNIGFLKLG-------RSVHGFIVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDR 373

Query: 392 STPILWRTLLSSCSSHNN 409
              ILW  +++ C +H  
Sbjct: 374 DL-ILWNAMIACCGAHGR 390


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 175/489 (35%), Positives = 280/489 (57%), Gaps = 11/489 (2%)

Query: 28  LPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDI 87
           +  C     +K+IH +  K  L+ D+ + + L+N   +      MEHA + F+ +P  D+
Sbjct: 66  IKACLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLK---FGLMEHAQVAFEELPIRDV 122

Query: 88  VLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLH 147
           VL+N M  GY++       +  F  + +  ++P  ++   +L   A +G   L  G+ +H
Sbjct: 123 VLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGD--LNNGRIIH 180

Query: 148 CFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPN 207
            FA+K+G +S + V  +LI++Y +C  +E A  IFE + E  + S+N+I + + +    +
Sbjct: 181 GFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHD 240

Query: 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK------ 261
             L L   +    ++P  VT+ + L +C+ L +L  G+ IH Y+   GL K  K      
Sbjct: 241 GTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVL 300

Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
           +  A+IDM+AKCG + DA  VF+ M  KD  +W+ MI+ Y  HG G++++ MF  M + Q
Sbjct: 301 LKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQ 360

Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
           + PDE+TF+G+L ACSH G V +G N+   M+ KY + P I+HY C++D+LGRAG+LDEA
Sbjct: 361 LKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEA 420

Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
           Y     +PI++ P++WR LL++C  H +  LA+   +R+FEL+  H G YV++SN+    
Sbjct: 421 YELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAV 480

Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
           GR+E+V  +R  M+ + V K PGCS IE+ N V  F S D  H  +  +   L+ L   L
Sbjct: 481 GRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRAHPEAYSIYAGLNSLTARL 540

Query: 502 KMVGYVPDT 510
              GYVPD 
Sbjct: 541 CEHGYVPDV 549



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 174/356 (48%), Gaps = 25/356 (7%)

Query: 80  DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEA 139
           D   E ++  FN +  G+  +  P      + ++ N G++PD ++FP  +KAC  V    
Sbjct: 17  DPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDV---- 72

Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
             E K++H    K GL  ++++ + L+N Y +   +E A+  FE +    VV +NA++  
Sbjct: 73  -LEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNG 131

Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259
           YA+  +    L  FR + + ++ P+  T+   LS  A++G L+ G+ IH +  K G D  
Sbjct: 132 YAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSG 191

Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
           V V+ +LIDM+ KC  ++DA+ +F+ M  KD  +W+++   +   G    ++ + + M+ 
Sbjct: 192 VAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLG 251

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG--IVPGIKHYG----------C 367
           A + PD +T   +L ACSH   +  G       R+ +G  IV G+   G           
Sbjct: 252 AGIQPDLVTVTTVLPACSHLAALMHG-------REIHGYMIVSGLGKDGKDIDDVLLKNA 304

Query: 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
           ++D+  + G + +A+   + +  K     W  ++     H     A ++  R+ E+
Sbjct: 305 VIDMYAKCGSMRDAHLVFERMXNKDVAS-WNIMIMGYGMHGYGNEALEMFSRMCEV 359



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 80/158 (50%), Gaps = 9/158 (5%)

Query: 269 MHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327
           M++KC +++ A+S+F + + + +  A++A+I  + T+G   +    +++M    V PD+ 
Sbjct: 1   MYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKF 60

Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
           TF   + AC     + +     + +  K+G+   +     +V+   + G ++ A    +E
Sbjct: 61  TFPCAIKACLDVLEIKK----IHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEE 116

Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
           LPI+   +LW  ++   + +  +G  + V+E    ++D
Sbjct: 117 LPIRDV-VLWNAMV---NGYAQIGQFEMVLETFRRMND 150


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 180/510 (35%), Positives = 281/510 (55%), Gaps = 38/510 (7%)

Query: 84  EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
           EP+++ +N +  G +RS     A+   V +   G LPD       L A   VG  A+  G
Sbjct: 118 EPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAV--G 175

Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
           +QLH + +K G   +  V T LI++Y +C   +   R+F+  S   V S NA++   +R+
Sbjct: 176 EQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRN 235

Query: 204 SRPNEAL-----------------------------------SLFRELQERNLKPTDVTM 228
           ++ +EAL                                    LFRE+Q   ++P  VT+
Sbjct: 236 AQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTI 295

Query: 229 LSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG 288
              L + A + +L  G+  H +  + G    + V +AL+DM+AKCGR+ DA  +F+ M  
Sbjct: 296 PCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPY 355

Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNY 348
           ++  +W+AMI  YA HG+   ++ +F  M  ++  PD +TF  +L ACS  G  +EG +Y
Sbjct: 356 RNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSY 415

Query: 349 FYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408
           F  M+ K+GI P ++HY CMV LLGRAG+LD+AY  I+++P +    +W +LL SC  H 
Sbjct: 416 FNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHG 475

Query: 409 NLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSI 468
           N+ LA+   E +F+L+  + G+YV+LSN+ A    W+ V+ LR +MK  G+ K  GCS I
Sbjct: 476 NVVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWI 535

Query: 469 EVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALR 528
           E+ N V    +GD  H     + + L  L  E++ +G+ P T  V H D+E++EK+  L 
Sbjct: 536 EIKNKVHMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTDYVLH-DVEEQEKDDILS 594

Query: 529 YHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            HSEKLA+  GL++T  GT ++V+KNLR+C
Sbjct: 595 VHSEKLAVALGLISTSHGTPLQVIKNLRIC 624



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 143/342 (41%), Gaps = 51/342 (14%)

Query: 163 TTLINLYAECSDVEAARRIFENIS----EPCVVSYNAIITAYARSSRPNEALSLFRELQE 218
           + LI  +A   D E A  + E +     EP V+++N +++   RS R  +A+     +  
Sbjct: 90  SALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHG 149

Query: 219 RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278
               P    +  ALS+   +G + +G+ +H Y+ K G      V TALIDM+ KCGR D+
Sbjct: 150 EGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADE 209

Query: 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
            V VFD  S  D  + +A++   + + Q  +++ +F E +   +  + +++  ++  C  
Sbjct: 210 IVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQ 269

Query: 339 TGLVDEGWNYFYSMRDKYGIVP-------------------------------GIKH--- 364
            G   E  + F  M+ + GI P                               G  H   
Sbjct: 270 NGRDLEAVDLFREMQSE-GIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIY 328

Query: 365 -YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423
               +VD+  + GR+ +A    + +P ++  + W  ++   + H   G A+  +     +
Sbjct: 329 VGSALVDMYAKCGRVRDARMIFEAMPYRNV-VSWNAMIGGYAMH---GEAENAVRLFRSM 384

Query: 424 DDS-HGGDYVILS---NLCARAGRW--EDVDYLRKLMKDRGV 459
             S    D V  +     C++AG W  E   Y  ++    G+
Sbjct: 385 QSSKEKPDLVTFTCVLGACSQAG-WTEEGRSYFNEMQHKHGI 425



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 11/129 (8%)

Query: 22  PNALSL---LPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
           PN++++   LP   +   L   +  H  +++    +D+ V + L++   +      +  A
Sbjct: 290 PNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAK---CGRVRDA 346

Query: 76  HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
            ++F+ +P  ++V +N M  GY+       A+ LF  + +S   PD  +F  +L AC+  
Sbjct: 347 RMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQA 406

Query: 136 GAEALEEGK 144
           G    EEG+
Sbjct: 407 GWT--EEGR 413


>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
 gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 178/519 (34%), Positives = 295/519 (56%), Gaps = 35/519 (6%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
           ++ A  L  + PE ++V + ++  GYSR+  P  A++ F  +L+ G+ PD+ +    L A
Sbjct: 185 LDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSA 244

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS----- 186
           C+ +  + LE G+ LH    K  +     +  TLI++YA+C D+  A+ +F+ +      
Sbjct: 245 CSKL--KNLEFGRLLHLLVGKKRIQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQKP 302

Query: 187 EPC---------------------------VVSYNAIITAYARSSRPNEALSLFRELQER 219
           EP                            V+++N++IT Y  S R  +AL LF +L+  
Sbjct: 303 EPWNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRH 362

Query: 220 NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279
            ++  + T++S L++CA LG+L  G+ +H  I++  +++ V + TAL+DM+ KCGR+D+A
Sbjct: 363 GMRADNFTVVSLLTACASLGALPQGRALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEA 422

Query: 280 VSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339
            +VF  M  +D   WSAMI   A +G G  ++  F +M +    P  +T++ +L ACSH+
Sbjct: 423 TAVFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQMKRDGFQPTSVTYIAVLTACSHS 482

Query: 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRT 399
            L++EG  +F  MR  + + P I+HYGCM+DLL R+G LDEA   +  +P++   ++W +
Sbjct: 483 SLLNEGRQHFNEMRSLHKLHPQIEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWAS 542

Query: 400 LLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459
           +LS+C  H N+ LA+   E + +L       YV L N+   + +W +   +R LM+++GV
Sbjct: 543 ILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWVEAKRIRMLMEEQGV 602

Query: 460 LKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDME 519
            K  G SSI V   V +F   D  H ++ ++   ++E+ + LK  GY P TS +   D++
Sbjct: 603 KKTAGYSSITVAGQVHKFVVNDQSHPWTLEIITMMEEIARRLKSAGYSPATSRI-AVDVD 661

Query: 520 DEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +EEKE AL  HSEK+AI FGL++ PP   I ++KNLRVC
Sbjct: 662 EEEKEQALLAHSEKIAIAFGLISLPPNLPIHIMKNLRVC 700



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 99/422 (23%), Positives = 174/422 (41%), Gaps = 75/422 (17%)

Query: 29  PRCTSFRGLKQIHAVTIKT----HLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84
           P   S R   Q+HA+   +    H  +  ++L  L N C   P    + +   LFDR+P 
Sbjct: 7   PTPRSVRQASQLHAILTTSGRIAHRPSAEHLLNSLTN-CLSAP--RHLRYVLSLFDRLPH 63

Query: 85  PDIVLFNTMARG-YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
           P   L +T  R     S      + +   +   G+    ++F  + + CA      L   
Sbjct: 64  PTTFLHDTALRACLQASAGADHPVLILRRMRRGGVRMSAFTFHFVFRCCAAGAGAGL--C 121

Query: 144 KQLHCFAIKLGLNSNL-YVCTTLINLYAECSDVEAARRIFENIS---------------- 186
           + LH   ++  L S    V   LI++YA     + ARR F+ +                 
Sbjct: 122 RMLHAACLRTMLPSAARIVANPLIHMYASLGLTDDARRAFDEVPVKDAVVWATVIGGLVR 181

Query: 187 ---------------EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSA 231
                          E  VVS+ ++I  Y+R+ RP +A+  F  +    ++P +V ++ A
Sbjct: 182 WGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGA 241

Query: 232 LSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC------------------ 273
           LS+C+ L +L+ G+ +H  + K  +    K+   LIDM+AKC                  
Sbjct: 242 LSACSKLKNLEFGRLLHLLVGKKRIQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQK 301

Query: 274 --------------GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
                         G +D A S+FD M  +D   +++MI  Y   G+   ++ +F ++ +
Sbjct: 302 PEPWNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRR 361

Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
             +  D  T + LL AC+  G + +G     S+  +  +   +     +VD+  + GR+D
Sbjct: 362 HGMRADNFTVVSLLTACASLGALPQGRALHASIEQRI-VEEDVYLVTALVDMYMKCGRVD 420

Query: 380 EA 381
           EA
Sbjct: 421 EA 422



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 68/153 (44%), Gaps = 1/153 (0%)

Query: 272 KCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLG 331
           + G LD+A  +      ++  +W+++I  Y+  G+   ++  F  M+   V PDE+  +G
Sbjct: 181 RWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIG 240

Query: 332 LLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIK 391
            L ACS    ++ G    + +  K  I    K    ++D+  + G + +A    D +   
Sbjct: 241 ALSACSKLKNLEFG-RLLHLLVGKKRIQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRG 299

Query: 392 STPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
             P  W  ++       ++ +A+ + +++   D
Sbjct: 300 QKPEPWNVIIDGYCKLGHVDIARSLFDQMGARD 332


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 176/489 (35%), Positives = 287/489 (58%), Gaps = 6/489 (1%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYS--FPSLL 129
           +E A  LFD + E D   +  M  GY +   P  A+ L+  +     +P+     F   +
Sbjct: 167 LEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQR---VPNSRPNIFTVSI 223

Query: 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC 189
              A    + +  GK++H   ++ GL+S+  + ++L+++Y +C  ++ AR IF+ I E  
Sbjct: 224 AVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKD 283

Query: 190 VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249
           VVS+ ++I  Y +SSR  E  SLF EL     +P + T    L++CA L + +LGK +H 
Sbjct: 284 VVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHG 343

Query: 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
           Y+ + G D Y   +++L+DM+ KCG ++ A  V D     D  +W+++I   A +GQ  +
Sbjct: 344 YMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDE 403

Query: 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369
           ++  F+ ++K+   PD +TF+ +L AC+H GLV++G  +FYS+ +K+ +     HY C+V
Sbjct: 404 ALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLV 463

Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429
           DLL R+GR ++    I E+P+K +  LW ++L  CS++ N+ LA++  + +F+++  +  
Sbjct: 464 DLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPV 523

Query: 430 DYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTD 489
            YV ++N+ A AG+WE+   +RK M++ GV K PG S  E+      F + D  H     
Sbjct: 524 TYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQ 583

Query: 490 LQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTI 549
           + + L EL K++K  GYVP TSLV H D+EDE+KE  L YHSEKLA+ F +L+T  GT I
Sbjct: 584 IVEFLRELRKKMKEEGYVPATSLVLH-DVEDEQKEENLVYHSEKLAVAFAILSTEEGTAI 642

Query: 550 RVVKNLRVC 558
           +V KNLR C
Sbjct: 643 KVFKNLRSC 651



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 9/131 (6%)

Query: 196 IITAYARSSRPNEAL------SLFRE---LQERNLKPTDVTMLSALSSCALLGSLDLGKW 246
           ++    R++R  EA+       L RE   L  R  KP   T  + +  C+   +L+ GK 
Sbjct: 47  VVERLCRANRFGEAIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKK 106

Query: 247 IHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ 306
           +HE+I+  G    + +   L+ M+AKCG L DA  VFD M  +D  +W+ M+  YA  G 
Sbjct: 107 VHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGL 166

Query: 307 GHKSILMFEEM 317
             ++  +F+EM
Sbjct: 167 LEEARKLFDEM 177



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 82/213 (38%), Gaps = 48/213 (22%)

Query: 38  KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
           KQ+H    +          + L++  T+     S +H   + D  P+PD+V + ++  G 
Sbjct: 339 KQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKH---VVDGCPKPDLVSWTSLIGGC 395

Query: 98  SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
           +++  P  A+  F  LL SG  PD  +F ++L AC   G                     
Sbjct: 396 AQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGL-------------------- 435

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVS-----YNAIITAYARSSRPNEALSL 212
                            VE     F +I+E   +S     Y  ++   ARS R  +  S+
Sbjct: 436 -----------------VEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSV 478

Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245
             E+    +KP+     S L  C+  G++DL +
Sbjct: 479 ISEMP---MKPSKFLWASVLGGCSTYGNIDLAE 508



 Score = 39.3 bits (90), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 2/118 (1%)

Query: 307 GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG 366
           G K +    +++     P   T+  L+  CS T  ++EG      +R   G VPGI  + 
Sbjct: 66  GQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTS-GFVPGIVIWN 124

Query: 367 CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
            ++ +  + G L +A +  DE+P +     W  +++  +    L  A+++ + + E D
Sbjct: 125 RLLRMYAKCGSLVDARKVFDEMPNRDL-CSWNVMVNGYAEVGLLEEARKLFDEMTEKD 181


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 188/539 (34%), Positives = 301/539 (55%), Gaps = 47/539 (8%)

Query: 25  LSLLPRCTSF----RGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFD 80
           +S+L  C+      RG KQIH   + T L   + V   L N   +     +++ A  LFD
Sbjct: 159 VSVLHACSQLLDIKRG-KQIHGRIVATSLGESVFVWNALTNMYAK---CGALDQARWLFD 214

Query: 81  RIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEAL 140
           R+   ++V +N+M  GY ++  P     LF E+ +SGL+PD  +  ++L A         
Sbjct: 215 RMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSA--------- 265

Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY 200
                                       Y +C  ++ A + F  I E   V +  ++   
Sbjct: 266 ----------------------------YFQCGYIDEACKTFREIKEKDKVCWTTMMVGC 297

Query: 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260
           A++ +  +AL LFRE+   N++P + T+ S +SSCA L SL  G+ +H     +G+D  +
Sbjct: 298 AQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDL 357

Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320
            V++AL+DM++KCG   DA  VF  M  ++  +W++MI+ YA +G+  +++ ++EEM+  
Sbjct: 358 LVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHE 417

Query: 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380
            + PD ITF+G+L AC H GLV+ G  YFYS+   +G+ P   HY CM++LLGRAG +D+
Sbjct: 418 NLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDK 477

Query: 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440
           A   I  +  +   ++W TLLS C  + ++   +     +FELD  + G Y++LSN+ A 
Sbjct: 478 AVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAA 537

Query: 441 AGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKE 500
            GRW+DV  +R LMK+  + K    S IE++N V +F + D  HS +  + + L+ L+K+
Sbjct: 538 CGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETEQIYEELNRLIKK 597

Query: 501 LKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTT-IRVVKNLRVC 558
           L+  G+ PDT+LV H D+ +EEK  ++ YHSEKLA+ F L+  P G T IR++KN+RVC
Sbjct: 598 LQESGFTPDTNLVLH-DVVEEEKFDSICYHSEKLALAFWLIKKPHGRTPIRIMKNIRVC 655



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 158/337 (46%), Gaps = 47/337 (13%)

Query: 69  TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSL 128
           + ++E    +FD++   D V +NT+  G+S +    +A+  FV +   G    DY+  S+
Sbjct: 102 SGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSV 161

Query: 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP 188
           L AC+ +    ++ GKQ+H   +   L  +++V   L N+YA+C  ++ AR +F+ +   
Sbjct: 162 LHACSQL--LDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNK 219

Query: 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248
            VVS+N++I+ Y ++ +P     LF E+Q   L P  VT+ + LS+              
Sbjct: 220 NVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSA-------------- 265

Query: 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308
                                + +CG +D+A   F  +  KD   W+ M+V  A +G+  
Sbjct: 266 ---------------------YFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEE 304

Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH---- 364
            ++L+F EM+   V PD  T   ++ +C+    + +G     ++  K  ++ G+ H    
Sbjct: 305 DALLLFREMLLENVRPDNFTISSVVSSCARLASLCQG----QAVHGK-AVIFGVDHDLLV 359

Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401
              +VD+  + G   +A+     +  ++  I W +++
Sbjct: 360 SSALVDMYSKCGETADAWIVFKRMLTRNV-ISWNSMI 395



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 127/251 (50%), Gaps = 8/251 (3%)

Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
           +++    +++ Y++  +VE  R +F+ +S    VSYN +I  ++ +   ++AL  F  +Q
Sbjct: 88  DVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQ 147

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
           E   + TD T +S L +C+ L  +  GK IH  I    L + V V  AL +M+AKCG LD
Sbjct: 148 EEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALD 207

Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
            A  +FD M  K+  +W++MI  Y  +GQ      +F EM  + + PD++T   +L A  
Sbjct: 208 QARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYF 267

Query: 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL---PIKSTP 394
             G +DE    F  +++K  +       GC      + G+ ++A     E+    ++   
Sbjct: 268 QCGYIDEACKTFREIKEKDKVCWTTMMVGC-----AQNGKEEDALLLFREMLLENVRPDN 322

Query: 395 ILWRTLLSSCS 405
               +++SSC+
Sbjct: 323 FTISSVVSSCA 333



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325
           L+ ++AK G L DA  +FD MS +D  +W+AM+ AY+  G       +F++M       D
Sbjct: 64  LLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQM----SVHD 119

Query: 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDK 355
            +++  ++   S  G   +   +F  M+++
Sbjct: 120 AVSYNTVIAGFSGNGCSSQALEFFVRMQEE 149


>gi|7362769|emb|CAB83139.1| putative protein [Arabidopsis thaliana]
          Length = 558

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 190/511 (37%), Positives = 298/511 (58%), Gaps = 55/511 (10%)

Query: 89  LFNTMARGYSRS-KTPIR--AIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145
           L+N + R    +  +P R   I +++ + N  + PD ++FP LL +        L  G++
Sbjct: 26  LWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFH--NPLHLPLGQR 83

Query: 146 LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS- 204
            H   +  GL+ + +V T+L+N+Y+ C D+ +A+R+F++     + ++N+++ AYA++  
Sbjct: 84  THAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGL 143

Query: 205 ------------------------------RPNEALSLFRELQ-----ERNLKPTDVTML 229
                                         +  EAL LFRE+Q     E  ++P + TM 
Sbjct: 144 IDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMS 203

Query: 230 SALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM-SG 288
           + LS+C  LG+L+ GKW+H YI KY ++  + + TALIDM+AKCG L+ A  VF+ + S 
Sbjct: 204 TVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSK 263

Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKA-QVSPDEITFLGLLYACSHTGLVDEGWN 347
           KD +A+SAMI   A +G   +   +F EM  +  ++P+ +TF+G+L AC H GL++EG +
Sbjct: 264 KDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKS 323

Query: 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
           YF  M +++GI P I+HYGCMVDL GR+G + EA  FI  +P++   ++W +LLS     
Sbjct: 324 YFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRML 383

Query: 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSS 467
            ++   +  ++R+ ELD  + G YV+LSN+ A+ GRW +           G+ KVPGCS 
Sbjct: 384 GDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWME-----------GINKVPGCSY 432

Query: 468 IEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIAL 527
           +EV  VV EF  GD     S  +   LDE+++ L+  GYV DT  V   D+ +++KEIAL
Sbjct: 433 VEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLL-DLNEKDKEIAL 491

Query: 528 RYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
            YHSEKLAI F L+ T PGT +R++KNLR+C
Sbjct: 492 SYHSEKLAIAFCLMKTRPGTPVRIIKNLRIC 522



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 126/236 (53%), Gaps = 11/236 (4%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELL-----NSGLLPDDYSFP 126
           ++ A  LFD +PE +++ ++ +  GY        A+ LF E+       + + P++++  
Sbjct: 144 IDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMS 203

Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI- 185
           ++L AC  +GA  LE+GK +H +  K  +  ++ + T LI++YA+C  +E A+R+F  + 
Sbjct: 204 TVLSACGRLGA--LEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALG 261

Query: 186 SEPCVVSYNAIITAYARSSRPNEALSLFRELQER-NLKPTDVTMLSALSSCALLGSLDLG 244
           S+  V +Y+A+I   A     +E   LF E+    N+ P  VT +  L +C   G ++ G
Sbjct: 262 SKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEG 321

Query: 245 K-WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMI 298
           K +    I+++G+   ++    ++D++ + G + +A S   +M  + D   W +++
Sbjct: 322 KSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLL 377


>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
 gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
          Length = 631

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 185/528 (35%), Positives = 294/528 (55%), Gaps = 8/528 (1%)

Query: 31  CTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLF 90
           C  F G KQIHA+ +K    ND  V     +  ++   T     A  LFD +P  ++ ++
Sbjct: 72  CLPFAG-KQIHAIALKLGQINDKFVGCSAFDMYSK---TGLKFEAQRLFDEMPPRNVAVW 127

Query: 91  NTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFA 150
           N           P +AI  F+E    G  PD  +F + L ACA   A  L+ G+QLH   
Sbjct: 128 NAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACA--DARCLDLGRQLHGLV 185

Query: 151 IKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEAL 210
           I+ G   ++ V   +I++Y +C +VE A  +F  +     VS+  ++ A  ++    +A 
Sbjct: 186 IRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKAC 245

Query: 211 SLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270
            +F   ++  ++ TD  + S +S+ A +  L+ G+ +H    K  ++  + V +AL+DM+
Sbjct: 246 VVFLMGRKEGIELTDYMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMY 305

Query: 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
            KCG ++D   VF  M  ++  +W+AMI  YA  G    ++ +FEEM    V+ + +T +
Sbjct: 306 GKCGSIEDCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQSEAVA-NYVTLI 364

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
            +L ACS  G V  G   F SMRD+Y I PG +HY C+ D+LGRAG ++ AY F+ ++PI
Sbjct: 365 CVLSACSRGGAVKLGNEIFESMRDRYRIEPGAEHYACIADMLGRAGMVERAYEFVQKMPI 424

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL 450
           + T  +W  LL++C  +    L K   + +F+LD    G++V+LSN+ A AGRW++   +
Sbjct: 425 RPTISVWGALLNACRVYGEPELGKIAADNLFKLDPKDSGNHVLLSNMFAAAGRWDEATLV 484

Query: 451 RKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT 510
           RK MKD G+ K  GCS +   N V  F + D  H  ++++Q  L +L  E++  GY+PDT
Sbjct: 485 RKEMKDVGIKKGAGCSWVTAKNKVHVFQAKDTSHERNSEIQAMLVKLRTEMQAAGYMPDT 544

Query: 511 SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           +   + D+E+EEK   + YHSEK+A+ FGL+  PPG  IR+ KNLR+C
Sbjct: 545 NYALY-DLEEEEKMTEVGYHSEKIALAFGLIALPPGVPIRITKNLRIC 591



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 183/386 (47%), Gaps = 10/386 (2%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A LL    P   +V +  +  G  ++     A+  F ++    + P+D++FP   KA   
Sbjct: 11  AQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFTFPCAFKASTA 70

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
           +       GKQ+H  A+KLG  ++ +V  +  ++Y++      A+R+F+ +    V  +N
Sbjct: 71  LCLPF--AGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNVAVWN 128

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254
           A I+      RP +A+  F E +    +P  +T  + L++CA    LDLG+ +H  + + 
Sbjct: 129 AYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQLHGLVIRS 188

Query: 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
           G +  V V   +ID++ KC  ++ A  VF+ M  +++ +W  M+ A   + +  K+ ++F
Sbjct: 189 GFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVF 248

Query: 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
               K  +   +     ++ A +    ++ G    +++  K  +   I     +VD+ G+
Sbjct: 249 LMGRKEGIELTDYMVSSVISAYAGISGLEFG-RSVHALAVKACVEGDIFVGSALVDMYGK 307

Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434
            G +++  +   E+P ++  + W  ++S  +   ++ +A  + E   E+      +YV L
Sbjct: 308 CGSIEDCEQVFHEMPERNL-VSWNAMISGYAHQGDVDMAMTLFE---EMQSEAVANYVTL 363

Query: 435 S---NLCARAGRWEDVDYLRKLMKDR 457
               + C+R G  +  + + + M+DR
Sbjct: 364 ICVLSACSRGGAVKLGNEIFESMRDR 389


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 185/541 (34%), Positives = 315/541 (58%), Gaps = 7/541 (1%)

Query: 19  TNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLL 78
           +N    L L  +  S  G +  HA  I+  L+ D+     LIN  ++    S ++ A   
Sbjct: 44  SNLHYLLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSK---CSLVDSARKK 100

Query: 79  FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
           F+ +P   +V +NT+    +++     A+ L +++   G   ++++  S+L  C C    
Sbjct: 101 FNEMPVKSLVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVL--CNCAFKC 158

Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
           A+ E  QLH F+IK  ++SN +V T L+++YA+CS ++ A ++FE++ E   V++++++ 
Sbjct: 159 AILECMQLHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMA 218

Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
            Y ++    EAL +FR  Q          + SA+S+CA L +L  GK +H    K G   
Sbjct: 219 GYVQNGFHEEALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGS 278

Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDN-MSGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317
            + V+++LIDM+AKCG + +A  VF   +  +    W+AMI  +A H +  +++++FE+M
Sbjct: 279 NIYVSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKM 338

Query: 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377
            +    PD++T++ +L ACSH GL +EG  YF  M  ++ + P + HY CM+D+LGRAG 
Sbjct: 339 QQRGFFPDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGL 398

Query: 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437
           + +AY  I+ +P  +T  +W +LL+SC  + N+  A+   + +FE++ ++ G++++L+N+
Sbjct: 399 VHKAYDLIERMPFNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEMEPNNAGNHILLANI 458

Query: 438 CARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDEL 497
            A   +W++V   RKL+++  V K  G S IE+ N +  F  G+  H    D+   LD L
Sbjct: 459 YAANKKWDEVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDIYAKLDNL 518

Query: 498 VKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRV 557
           V ELK + Y  DTS   H D+E+  K++ LR+HSEKLAITFGL+  P    IR++KNLR+
Sbjct: 519 VVELKKLNYKVDTSNDLH-DVEENRKQMLLRHHSEKLAITFGLMCLPRDIPIRIIKNLRI 577

Query: 558 C 558
           C
Sbjct: 578 C 578


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 190/522 (36%), Positives = 292/522 (55%), Gaps = 38/522 (7%)

Query: 72  MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN-SGLLPDDYSFPSLLK 130
           M+ A  LF+ +P+  IV +N +  GY+++    +A++ F  +L+ S + PD+++  S+L 
Sbjct: 244 MDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLS 303

Query: 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR----------- 179
           ACA +G  ++  GKQ+H + ++  +     V   LI++YA+   VE AR           
Sbjct: 304 ACANLGMVSI--GKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADL 361

Query: 180 ----------------------RIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
                                  +F+ +S   VV++ A+I  Y ++   +EA+ LFR + 
Sbjct: 362 NVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMI 421

Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
               +P   T+ + LS CA L  L+ GK IH    +   ++   V+ +++ M+A+ G L 
Sbjct: 422 RSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLP 481

Query: 278 DAVSVFDNMSG-KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
            A  VFD +   K+T  W++MIVA A HG G  ++ +FEEM++  V PD ITF+G+L AC
Sbjct: 482 WARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSAC 541

Query: 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPIL 396
           +H G VDEG  YF  ++DK+GIVP + HY CMVDLL RAG   EA  FI ++P++   I 
Sbjct: 542 THVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIA 601

Query: 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456
           W +LLS+C  H N  LA+   E++  +D  + G Y  LSN+ +  GRW D   + K  KD
Sbjct: 602 WGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKIWKRRKD 661

Query: 457 RGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHG 516
           + V K  G S   + N V  F + D +H     + +   ++  ++K  G+VPD   V H 
Sbjct: 662 KSVKKETGFSWTHIGNRVHVFGADDVLHPQRDTVYRTAAKMWDDIKKAGFVPDLQSVLH- 720

Query: 517 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
           D++DE KE  L  HSEKLAI FGL++TP  TT+R++KNLRVC
Sbjct: 721 DVDDELKEEMLSRHSEKLAIAFGLVSTPEKTTLRIMKNLRVC 762



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 184/402 (45%), Gaps = 76/402 (18%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  +F  +PE D V +  M  G +R      AI +F++++  GL P  ++  ++L +CA 
Sbjct: 115 ARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAA 174

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
             A  +  G+++H F +KLGL+S + V  +++N+Y +C D E AR +FE + E  V S+N
Sbjct: 175 TEARGV--GRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPERSVSSWN 232

Query: 195 AIITAYARSSRPNEALSLFRELQER--------------------------------NLK 222
           A+++  A   R + ALSLF  + +R                                 + 
Sbjct: 233 AMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMA 292

Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
           P + T+ S LS+CA LG + +GK +H YI +  +    +V  ALI M+AK G +++A  V
Sbjct: 293 PDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGV 352

Query: 283 ---------------------------------FDNMSGKDTQAWSAMIVAYATHGQGHK 309
                                            FD MS +D  AW+AMIV Y  +G   +
Sbjct: 353 MQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDE 412

Query: 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNY----FYSMRDKYGIVPGIKHY 365
           ++ +F  M+++   P+  T   +L  C+    ++ G         S++++   V      
Sbjct: 413 AMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVS----- 467

Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
             +V +  R+G L  A R  D +  +   + W +++ + + H
Sbjct: 468 NSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQH 509



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 148/319 (46%), Gaps = 73/319 (22%)

Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD-----VEAARRIFENI--S 186
           C  A     G+ +H  A+K GL ++ Y+C  L++ YA  +         ARR+F+ I  +
Sbjct: 33  CQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDEIPAA 92

Query: 187 EPCVVSYNAIITAYARSSRPNEALSLFRELQERN-------------------------- 220
           +  V ++N++++ YA+S R  +A ++F E+ ER+                          
Sbjct: 93  QRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLD 152

Query: 221 -----LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC-- 273
                L PT  T+ + LSSCA   +  +G+ +H ++ K GL   V V  ++++M+ KC  
Sbjct: 153 MVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGD 212

Query: 274 -----------------------------GRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
                                        GR+D A+S+F+NM  +   +W+A+I  Y  +
Sbjct: 213 AETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQN 272

Query: 305 GQGHKSILMFEEMMK-AQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGI 362
           G   K++  F  M+  + ++PDE T   +L AC++ G+V  G   + Y +R +   +  +
Sbjct: 273 GLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQV 332

Query: 363 KHYGCMVDLLGRAGRLDEA 381
            +   ++ +  ++G ++ A
Sbjct: 333 TN--ALISMYAKSGSVENA 349



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 2/156 (1%)

Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
           +L+ ++AK GRL DA +VF  M  +D  +W+ M+V     G+  ++I MF +M+   +SP
Sbjct: 101 SLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSP 160

Query: 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF 384
            + T   +L +C+ T     G    +S   K G+   +     ++++ G+ G  + A   
Sbjct: 161 TQFTLTNVLSSCAATEARGVG-RKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAV 219

Query: 385 IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420
            + +P +S    W  ++S  +    + LA  + E +
Sbjct: 220 FERMPERSVSS-WNAMVSLDAHLGRMDLALSLFENM 254


>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
          Length = 785

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 194/547 (35%), Positives = 302/547 (55%), Gaps = 25/547 (4%)

Query: 24  ALSLLPRCTSFRG------LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHL 77
           AL  + +C S RG       + +H   IK  L +D+ +++ +I+   +     ++  A  
Sbjct: 212 ALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKK---GALVEAAA 268

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPI------RAIFLFVELLNSGLLPDDYSFPSLLKA 131
           LF  + EP++V+FNTM  G+ R++T I       A+ L+ E+ + G+ P +++F S+L+A
Sbjct: 269 LFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRA 328

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C   G   LE GKQ+H   IK     + ++ + LI+LY     +E   R F +  +  +V
Sbjct: 329 CNLAGY--LEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIV 386

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           ++ A+++   ++    +ALSLF E     LKP   T+ S +++CA L     G+ I  + 
Sbjct: 387 TWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFA 446

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            K G D++  +  + + M+A+ G +D A   F  M   D  +WSA+I  +A HG    ++
Sbjct: 447 TKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDAL 506

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
             F+EM+ A+V P+EITFLG+L ACSH GLVDEG  Y+ +M   YG+ P IKH  C+VDL
Sbjct: 507 HFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMNKDYGLSPTIKHCTCVVDL 566

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
           LGRAGRL +A  FI      + P++WR+LL+SC  H +L   + V  RI EL+ +    Y
Sbjct: 567 LGRAGRLADAEAFISNGIFHADPVIWRSLLASCRIHRDLERGQLVANRIMELEPTSSASY 626

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           VIL N+   AG        R LMK RGV K PG S IE+   V  F +GD  H  S+ + 
Sbjct: 627 VILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIELKCGVHSFVAGDKSHPESSAIY 686

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
             L+E++  ++ +    DT +        + ++  +  HSEKLA+  G+++ P    IRV
Sbjct: 687 TKLEEMLSRIEKLA-TTDTEI-------SKREQNLMNCHSEKLAVALGMIHLPQSAPIRV 738

Query: 552 VKNLRVC 558
           +KNLRVC
Sbjct: 739 MKNLRVC 745



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 192/407 (47%), Gaps = 22/407 (5%)

Query: 30  RCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVL 89
           R    R  + +HA+ I   L + + V   L++  ++      M  A  +FD   E D V 
Sbjct: 121 RAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSK---CGEMGEARRVFDVAEERDDVS 177

Query: 90  FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCF 149
           +N++  GY R+      + +F  +   G+  + ++  S++K C+  G   ++  + +H  
Sbjct: 178 WNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGC 237

Query: 150 AIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSR---- 205
            IK GL+S++++ + +I++YA+   +  A  +F ++ EP VV +N +I  + R+      
Sbjct: 238 VIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGK 297

Query: 206 --PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
              +EAL+L+ E+Q R ++PT+ T  S L +C L G L+ GK IH  + KY   +   + 
Sbjct: 298 EVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIG 357

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
           +ALID++   G ++D    F +    D   W+AM+     +    K++ +F E + A + 
Sbjct: 358 SALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLK 417

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM----VDLLGRAGRLD 379
           PD  T   ++ AC+   +   G          +    G   +  M    V +  R+G +D
Sbjct: 418 PDLFTISSVMNACASLAVARAGEQI-----QCFATKSGFDRFTVMGNSCVHMYARSGDVD 472

Query: 380 EAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
            A R   E+      + W  ++S  + H   G A+  +    E+ D+
Sbjct: 473 AATRRFQEMESHDV-VSWSAVISCHAQH---GCARDALHFFDEMVDA 515



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 165/338 (48%), Gaps = 12/338 (3%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  L D +P  + V FN +   YSR      ++        +G+  D +S+ + L AC+ 
Sbjct: 62  ARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAGVDVDRFSYAAALAACSR 121

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
            G   L  G+ +H  AI  GL+S ++V  +L+++Y++C ++  ARR+F+   E   VS+N
Sbjct: 122 AG--HLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWN 179

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL--GSLDLGKWIHEYIK 252
           ++++ Y R+    E + +F  ++   +      + S +  C+    G++D+ + +H  + 
Sbjct: 180 SLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVI 239

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ------ 306
           K GLD  V + +A+IDM+AK G L +A ++F ++   +   ++ MI  +           
Sbjct: 240 KAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEV 299

Query: 307 GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG 366
             +++ ++ E+    + P E TF  +L AC+  G ++ G    +    KY          
Sbjct: 300 ASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFG-KQIHGQVIKYTFQEDDFIGS 358

Query: 367 CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSC 404
            ++DL   +G +++ +R     P K   + W  ++S C
Sbjct: 359 ALIDLYFNSGCMEDGFRCFRSSP-KHDIVTWTAMVSGC 395



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 119/262 (45%), Gaps = 13/262 (4%)

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
           ++L++  TL+  Y        ARR+ + +     VS+N +I AY+R      +L      
Sbjct: 41  ASLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARA 100

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           +   +     +  +AL++C+  G L  G+ +H      GL   V V+ +L+ M++KCG +
Sbjct: 101 RRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEM 160

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
            +A  VFD    +D  +W++++  Y   G   + + +F  M +  +  +      ++  C
Sbjct: 161 GEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCC 220

Query: 337 SHTGLVDEGWNYFYSMRD---KYGIVPGIKHYGCMVDLLGRAGRLDEA---YRFIDELPI 390
           S  G  D   +   ++     K G+   +     M+D+  + G L EA   +R + E  +
Sbjct: 221 SGRG--DGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNV 278

Query: 391 KSTPILWRTLLSS-CSSHNNLG 411
               +++ T+++  C +   +G
Sbjct: 279 ----VMFNTMIAGFCRTETVIG 296


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 194/547 (35%), Positives = 302/547 (55%), Gaps = 25/547 (4%)

Query: 24  ALSLLPRCTSFRG------LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHL 77
           AL  + +C S RG       + +H   IK  L +D+ +++ +I+   +     ++  A  
Sbjct: 212 ALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKK---GALVEAAA 268

Query: 78  LFDRIPEPDIVLFNTMARGYSRSKTPI------RAIFLFVELLNSGLLPDDYSFPSLLKA 131
           LF  + EP++V+FNTM  G+ R++T I       A+ L+ E+ + G+ P +++F S+L+A
Sbjct: 269 LFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRA 328

Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
           C   G   LE GKQ+H   IK     + ++ + LI+LY     +E   R F +  +  +V
Sbjct: 329 CNLAGY--LEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIV 386

Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
           ++ A+++   ++    +ALSLF E     LKP   T+ S +++CA L     G+ I  + 
Sbjct: 387 TWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFA 446

Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
            K G D++  +  + + M+A+ G +D A   F  M   D  +WSA+I  +A HG    ++
Sbjct: 447 TKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDAL 506

Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
             F+EM+ A+V P+EITFLG+L ACSH GLVDEG  Y+ +M   YG+ P IKH  C+VDL
Sbjct: 507 HFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMTKDYGLSPTIKHCTCVVDL 566

Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
           LGRAGRL +A  FI      + P++WR+LL+SC  H +L   + V  RI EL+ +    Y
Sbjct: 567 LGRAGRLADAEAFISNSIFHADPVIWRSLLASCRIHRDLERGQLVANRIMELEPTSSASY 626

Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
           VIL N+   AG        R LMK RGV K PG S IE+   V  F +GD  H  S+ + 
Sbjct: 627 VILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIELKCGVHSFVAGDKSHPESSAIY 686

Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
             L+E++  ++ +    DT +        + ++  +  HSEKLA+  G+++ P    IRV
Sbjct: 687 TKLEEMLSRIEKLA-TTDTEI-------SKREQNLMNCHSEKLAVALGMIHLPQSAPIRV 738

Query: 552 VKNLRVC 558
           +KNLRVC
Sbjct: 739 MKNLRVC 745



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 192/407 (47%), Gaps = 22/407 (5%)

Query: 30  RCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVL 89
           R    R  + +HA+ I   L + + V   L++  ++      M  A  +FD   E D V 
Sbjct: 121 RAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSK---CGEMGEARRVFDVAEERDDVS 177

Query: 90  FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCF 149
           +N++  GY R+      + +F  +   G+  + ++  S++K C+  G   ++  + +H  
Sbjct: 178 WNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGC 237

Query: 150 AIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSR---- 205
            IK GL+S++++ + +I++YA+   +  A  +F ++ EP VV +N +I  + R+      
Sbjct: 238 VIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGK 297

Query: 206 --PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVN 263
              +EAL+L+ E+Q R ++PT+ T  S L +C L G L+ GK IH  + KY   +   + 
Sbjct: 298 EVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIG 357

Query: 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323
           +ALID++   G ++D    F +    D   W+AM+     +    K++ +F E + A + 
Sbjct: 358 SALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLK 417

Query: 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM----VDLLGRAGRLD 379
           PD  T   ++ AC+   +   G          +    G   +  M    V +  R+G +D
Sbjct: 418 PDLFTISSVMNACASLAVARAGEQI-----QCFATKSGFDRFTVMGNSCVHMYARSGDVD 472

Query: 380 EAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
            A R   E+      + W  ++S  + H   G A+  +    E+ D+
Sbjct: 473 AATRRFQEMESHDV-VSWSAVISCHAQH---GCARDALHFFDEMVDA 515



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 165/338 (48%), Gaps = 12/338 (3%)

Query: 75  AHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134
           A  L D +P  + V FN +   YSR      ++        +G+  D +S+ + L AC+ 
Sbjct: 62  ARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAGVDVDRFSYAAALAACSR 121

Query: 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN 194
            G   L  G+ +H  AI  GL+S ++V  +L+++Y++C ++  ARR+F+   E   VS+N
Sbjct: 122 AG--HLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWN 179

Query: 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL--GSLDLGKWIHEYIK 252
           ++++ Y R+    E + +F  ++   +      + S +  C+    G++D+ + +H  + 
Sbjct: 180 SLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVI 239

Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ------ 306
           K GLD  V + +A+IDM+AK G L +A ++F ++   +   ++ MI  +           
Sbjct: 240 KAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEV 299

Query: 307 GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG 366
             +++ ++ E+    + P E TF  +L AC+  G ++ G    +    KY          
Sbjct: 300 ASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFG-KQIHGQVIKYTFQEDDFIGS 358

Query: 367 CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSC 404
            ++DL   +G +++ +R     P K   + W  ++S C
Sbjct: 359 ALIDLYFNSGCMEDGFRCFRSSP-KHDIVTWTAMVSGC 395



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 119/262 (45%), Gaps = 13/262 (4%)

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
           ++L++  TL+  Y        ARR+ + +     VS+N +I AY+R      +L      
Sbjct: 41  ASLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARA 100

Query: 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
           +   +     +  +AL++C+  G L  G+ +H      GL   V V+ +L+ M++KCG +
Sbjct: 101 RRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEM 160

Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336
            +A  VFD    +D  +W++++  Y   G   + + +F  M +  +  +      ++  C
Sbjct: 161 GEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCC 220

Query: 337 SHTGLVDEGWNYFYSMRD---KYGIVPGIKHYGCMVDLLGRAGRLDEA---YRFIDELPI 390
           S  G  D   +   ++     K G+   +     M+D+  + G L EA   +R + E  +
Sbjct: 221 SGRG--DGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNV 278

Query: 391 KSTPILWRTLLSS-CSSHNNLG 411
               +++ T+++  C +   +G
Sbjct: 279 ----VMFNTMIAGFCRTETVIG 296


>gi|242045040|ref|XP_002460391.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
 gi|241923768|gb|EER96912.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
          Length = 573

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 197/493 (39%), Positives = 283/493 (57%), Gaps = 39/493 (7%)

Query: 102 TPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG-LNSNLY 160
            P  A+ LF  LL SG  PD  ++   L +CA    +      QLH  A K G L S+  
Sbjct: 58  NPHLALRLFDHLLRSGADPDPAAYELALASCA--RGKDRATAAQLHAHAAKRGFLASHRR 115

Query: 161 VCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR------------------ 202
           V   L++ YA C  +  ARR+F+  ++  +V++N ++  YA+                  
Sbjct: 116 VRCRLVHAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDADLLRDFFARMPSR 175

Query: 203 --------------SSRPNEALSLFRE-LQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247
                         +   +EA+++FRE L  +  +P  VT++S +S+ A LG+L  G W 
Sbjct: 176 DSVSWNTVLSLCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAQGLWA 235

Query: 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDT-QAWSAMIVAYATHGQ 306
           H Y+ + G++   K+++ALI+M++KCG L+ AV VFDN+ GK +   W+AM+  +  +G 
Sbjct: 236 HAYVIRKGVEVEEKLSSALINMYSKCGFLEGAVYVFDNVRGKRSLDTWNAMLAGFTANGC 295

Query: 307 GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG 366
             +++ +F  M    + P++ITF  +L ACSH GLV+EG   F  M   YGI P I HYG
Sbjct: 296 SGRALALFTRMETTGLMPNKITFNCILNACSHGGLVEEGMRCFQRMSRVYGIEPDIAHYG 355

Query: 367 CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
           CMVDL  RAG  ++A   I  +P++    + + LL +C +H NL L K+   R+ E   +
Sbjct: 356 CMVDLFCRAGMFEKAEEIIQIMPMEPDASMLKALLGACRTHKNLELGKKAGHRLIEAAPN 415

Query: 427 HGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSY 486
               YV+LSN+ A  G W  V  +RKLM DRGVLK PG SS+E+N V+ EF SGD  HS 
Sbjct: 416 DHAGYVLLSNIYALDGNWGRVHKVRKLMLDRGVLKTPGSSSVELNGVIHEFISGDKSHSR 475

Query: 487 STDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEE-KEIALRYHSEKLAITFGLLNTPP 545
             D+ K LDE+ ++LK  GY PDTS V   D++DE+ KE +L  HSEKLAI FGL++T P
Sbjct: 476 KRDIYKMLDEICQQLKSAGYTPDTSQVLL-DIDDEDVKESSLAVHSEKLAIAFGLISTAP 534

Query: 546 GTTIRVVKNLRVC 558
           GT IRVV NLR+C
Sbjct: 535 GTPIRVVNNLRIC 547



 Score = 45.8 bits (107), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 109/229 (47%), Gaps = 25/229 (10%)

Query: 41  HAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI-PEPDIVLFNTMARGYSR 99
           HA  I+  ++ +  + + LIN  ++      +E A  +FD +  +  +  +N M  G++ 
Sbjct: 236 HAYVIRKGVEVEEKLSSALINMYSK---CGFLEGAVYVFDNVRGKRSLDTWNAMLAGFTA 292

Query: 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCF---AIKLGLN 156
           +    RA+ LF  +  +GL+P+  +F  +L AC+  G   +EEG  + CF   +   G+ 
Sbjct: 293 NGCSGRALALFTRMETTGLMPNKITFNCILNACSHGG--LVEEG--MRCFQRMSRVYGIE 348

Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENIS-EPCVVSYNAIITAYARSSRPNEALSLFRE 215
            ++     +++L+      E A  I + +  EP      A++ A     R ++ L L ++
Sbjct: 349 PDIAHYGCMVDLFCRAGMFEKAEEIIQIMPMEPDASMLKALLGA----CRTHKNLELGKK 404

Query: 216 LQERNLK--PTDVTMLSALSSCALLGSLDLGKW--IHEYIKKYGLDKYV 260
              R ++  P D      LS+   + +LD G W  +H+ ++K  LD+ V
Sbjct: 405 AGHRLIEAAPNDHAGYVLLSN---IYALD-GNWGRVHK-VRKLMLDRGV 448


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 192/528 (36%), Positives = 291/528 (55%), Gaps = 38/528 (7%)

Query: 66  NPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN-SGLLPDDYS 124
           N     M+ A  LF+ +P   IV +N M  GY+++    +A+ LF  +L+ S + PD+++
Sbjct: 240 NTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFT 299

Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
             S+L ACA +G   +  GKQ+H + ++  +  N  V   LI+ YA+   VE ARRI + 
Sbjct: 300 ITSVLSACANLGN--VRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQ 357

Query: 185 ISEPC---------------------------------VVSYNAIITAYARSSRPNEALS 211
             E                                   VV++ A+I  Y ++ R +EA+ 
Sbjct: 358 SMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAID 417

Query: 212 LFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271
           LFR +     +P   T+ + LS CA L  LD GK IH    +  L++   V+ A+I M+A
Sbjct: 418 LFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYA 477

Query: 272 KCGRLDDAVSVFDNMSG-KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL 330
           + G    A  +FD +   K+T  W++MIVA A HGQG +++ +FEEM++A V PD IT++
Sbjct: 478 RSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYV 537

Query: 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
           G+L ACSH G V+EG  Y+  +++++ I P + HY CMVDLL RAG   EA  FI  +P+
Sbjct: 538 GVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPV 597

Query: 391 KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL 450
           +   I W +LLS+C  H N  LA+   E++  +D ++ G Y  ++N+ +  GRW D   +
Sbjct: 598 EPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARI 657

Query: 451 RKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDT 510
            K  K++ V K  G S   + + +  F + D VH     +      + +E+K  G+VPD 
Sbjct: 658 WKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDL 717

Query: 511 SLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
             V H D++DE KE  L  HSEKLAI FGL++TP  TT+RV+KNLRVC
Sbjct: 718 QSVLH-DVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVC 764



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 148/315 (46%), Gaps = 72/315 (22%)

Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSD----VEAARRIFENI--SEPCVVSYNAI 196
           G+ +H  A+K GL ++ Y+C  L++ Y E +     +  ARR+F+ I  +   V ++N++
Sbjct: 45  GRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNSL 104

Query: 197 ITAYARSSRPNEALSLFRELQERN-------------------------------LKPTD 225
           ++ +A+S R  +A  +F E+ ER+                                 PT 
Sbjct: 105 LSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQ 164

Query: 226 VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC------------ 273
            T+ + LSSCA+  +  +G+ +H ++ K GL   V V  ++++M+ KC            
Sbjct: 165 FTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFER 224

Query: 274 -------------------GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314
                              GR+D A S+F++M G+   +W+AMI  Y  +G   K++ +F
Sbjct: 225 MPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLF 284

Query: 315 EEMM-KAQVSPDEITFLGLLYACSHTGLVDEGWN-YFYSMRDKYGIVPGIKHYGCMVDLL 372
             M+ ++ ++PDE T   +L AC++ G V  G   + Y +R +      + +   ++   
Sbjct: 285 SRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALISTY 342

Query: 373 GRAGRLDEAYRFIDE 387
            ++G ++ A R +D+
Sbjct: 343 AKSGSVENARRIMDQ 357



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 132/273 (48%), Gaps = 6/273 (2%)

Query: 49  LQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIF 108
           ++ DLNV++              ME A  +F  +   D+V +  M  GY ++     AI 
Sbjct: 359 METDLNVIS-FTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAID 417

Query: 109 LFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINL 168
           LF  ++  G  P+ Y+  ++L  CA +    L+ GKQ+HC AI+  L  +  V   +I +
Sbjct: 418 LFRSMITCGPEPNSYTLAAVLSVCASLAC--LDYGKQIHCRAIRSLLERSSSVSNAIITM 475

Query: 169 YAECSDVEAARRIFENIS-EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT 227
           YA       ARR+F+ +      +++ ++I A A+  +  EA+ LF E+    ++P  +T
Sbjct: 476 YARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRIT 535

Query: 228 MLSALSSCALLGSLDLGKWIHEYIK-KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
            +  LS+C+  G ++ GK  ++ IK ++ +   +     ++D+ A+ G   +A      M
Sbjct: 536 YVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRM 595

Query: 287 SGK-DTQAWSAMIVAYATHGQGHKSILMFEEMM 318
             + D  AW +++ A   H     + L  E+++
Sbjct: 596 PVEPDAIAWGSLLSACRVHKNAELAELAAEKLL 628


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.136    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,921,578,389
Number of Sequences: 23463169
Number of extensions: 376832866
Number of successful extensions: 1145088
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9139
Number of HSP's successfully gapped in prelim test: 2799
Number of HSP's that attempted gapping in prelim test: 986219
Number of HSP's gapped (non-prelim): 52262
length of query: 558
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 410
effective length of database: 8,886,646,355
effective search space: 3643525005550
effective search space used: 3643525005550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)