Query 036003
Match_columns 558
No_of_seqs 628 out of 4054
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 08:29:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 7E-90 1.5E-94 726.0 63.2 536 17-558 119-657 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 9.9E-87 2.1E-91 718.6 63.2 535 15-558 282-819 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 7.6E-68 1.7E-72 571.7 46.4 475 15-513 181-660 (857)
4 PLN03218 maturation of RBCL 1; 100.0 5.2E-63 1.1E-67 524.1 48.7 447 19-471 368-855 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 9.6E-62 2.1E-66 514.5 52.3 438 19-464 435-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 2.8E-57 6.1E-62 478.3 40.6 410 84-512 84-496 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.5E-26 7.6E-31 252.7 45.7 397 50-460 462-869 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 7.7E-26 1.7E-30 250.0 48.2 423 20-456 464-899 (899)
9 KOG4626 O-linked N-acetylgluco 99.9 2.3E-21 5E-26 183.5 33.4 383 59-457 88-485 (966)
10 KOG4626 O-linked N-acetylgluco 99.9 1.4E-20 3E-25 178.3 29.7 387 53-454 116-516 (966)
11 PRK11788 tetratricopeptide rep 99.9 1.8E-20 3.9E-25 186.0 29.7 290 171-464 47-354 (389)
12 TIGR00990 3a0801s09 mitochondr 99.9 8.1E-19 1.8E-23 183.3 42.8 389 56-457 130-571 (615)
13 PRK11447 cellulose synthase su 99.9 5.4E-18 1.2E-22 188.7 47.2 259 195-462 466-746 (1157)
14 PRK11447 cellulose synthase su 99.9 3.2E-18 7E-23 190.4 45.0 386 59-458 275-701 (1157)
15 PRK11788 tetratricopeptide rep 99.9 2.7E-19 5.8E-24 177.6 32.4 282 138-424 49-348 (389)
16 PRK15174 Vi polysaccharide exp 99.9 3.7E-18 8E-23 177.8 41.2 349 70-428 19-386 (656)
17 PRK10049 pgaA outer membrane p 99.8 3.5E-17 7.7E-22 174.1 41.5 394 52-457 14-456 (765)
18 PRK15174 Vi polysaccharide exp 99.8 2.2E-17 4.8E-22 172.0 38.3 353 97-458 15-382 (656)
19 PRK10049 pgaA outer membrane p 99.8 5.5E-16 1.2E-20 165.1 45.2 398 21-430 18-463 (765)
20 TIGR00990 3a0801s09 mitochondr 99.8 1.8E-16 3.9E-21 165.8 36.4 357 90-458 130-538 (615)
21 PRK14574 hmsH outer membrane p 99.8 1E-14 2.2E-19 152.5 44.0 391 58-457 73-513 (822)
22 PRK09782 bacteriophage N4 rece 99.8 8.8E-15 1.9E-19 156.2 44.0 225 224-456 476-705 (987)
23 PRK09782 bacteriophage N4 rece 99.8 2.3E-14 4.9E-19 153.1 45.5 194 259-457 476-672 (987)
24 KOG4422 Uncharacterized conser 99.8 4.2E-14 9E-19 129.2 37.9 409 4-424 99-591 (625)
25 PRK14574 hmsH outer membrane p 99.7 4.8E-13 1.1E-17 140.1 42.8 387 33-430 80-520 (822)
26 KOG2003 TPR repeat-containing 99.7 1.7E-13 3.6E-18 126.2 29.5 202 238-443 503-709 (840)
27 KOG2002 TPR-containing nuclear 99.7 1.8E-13 3.9E-18 137.4 31.8 397 50-458 267-746 (1018)
28 KOG4422 Uncharacterized conser 99.6 1E-11 2.2E-16 113.9 36.9 397 53-460 116-593 (625)
29 KOG2002 TPR-containing nuclear 99.6 9.6E-13 2.1E-17 132.3 32.0 406 22-438 271-760 (1018)
30 PF13429 TPR_15: Tetratricopep 99.6 9.9E-16 2.1E-20 144.0 9.9 256 196-455 14-275 (280)
31 KOG2076 RNA polymerase III tra 99.6 1.8E-12 3.9E-17 129.5 31.4 314 138-455 153-510 (895)
32 PRK10747 putative protoheme IX 99.6 4.4E-12 9.6E-17 124.8 33.7 245 170-421 129-388 (398)
33 KOG0495 HAT repeat protein [RN 99.6 1.3E-10 2.9E-15 112.2 39.8 369 88-470 517-891 (913)
34 TIGR00540 hemY_coli hemY prote 99.6 1.5E-11 3.3E-16 121.7 34.2 289 128-421 88-397 (409)
35 KOG0547 Translocase of outer m 99.6 1.1E-11 2.3E-16 115.7 30.3 214 236-455 337-564 (606)
36 KOG0495 HAT repeat protein [RN 99.6 7.2E-11 1.6E-15 113.9 35.7 387 62-459 415-848 (913)
37 PRK10747 putative protoheme IX 99.5 7.6E-12 1.7E-16 123.2 29.0 276 100-388 97-387 (398)
38 KOG1155 Anaphase-promoting com 99.5 8.1E-11 1.7E-15 109.3 33.0 241 138-387 241-491 (559)
39 PF13429 TPR_15: Tetratricopep 99.5 5.4E-14 1.2E-18 132.2 11.4 258 92-354 13-276 (280)
40 KOG1155 Anaphase-promoting com 99.5 6.6E-11 1.4E-15 109.9 30.7 325 124-456 164-494 (559)
41 KOG1126 DNA-binding cell divis 99.5 1.5E-12 3.2E-17 126.2 19.9 276 174-459 334-622 (638)
42 COG3071 HemY Uncharacterized e 99.5 1.9E-10 4.1E-15 105.2 31.9 285 129-421 89-388 (400)
43 KOG1915 Cell cycle control pro 99.5 6.8E-10 1.5E-14 103.4 35.7 400 51-464 71-507 (677)
44 KOG1126 DNA-binding cell divis 99.5 6.3E-12 1.4E-16 121.9 23.3 280 138-428 333-625 (638)
45 KOG2076 RNA polymerase III tra 99.5 1.6E-10 3.4E-15 115.9 33.6 313 70-388 153-509 (895)
46 TIGR00540 hemY_coli hemY prote 99.5 3.3E-11 7.1E-16 119.4 28.3 292 90-388 85-396 (409)
47 KOG2003 TPR repeat-containing 99.5 8.3E-11 1.8E-15 108.7 28.1 393 55-457 203-689 (840)
48 COG2956 Predicted N-acetylgluc 99.5 1.5E-10 3.3E-15 102.7 27.3 261 138-403 49-324 (389)
49 KOG1915 Cell cycle control pro 99.4 4.5E-09 9.8E-14 98.1 35.0 404 38-457 93-536 (677)
50 KOG1840 Kinesin light chain [C 99.4 1.2E-10 2.6E-15 114.2 25.6 231 225-455 199-477 (508)
51 COG3071 HemY Uncharacterized e 99.4 6.4E-10 1.4E-14 101.8 28.2 281 172-460 97-393 (400)
52 COG2956 Predicted N-acetylgluc 99.4 6E-10 1.3E-14 99.0 26.7 265 100-373 48-326 (389)
53 KOG4318 Bicoid mRNA stability 99.4 6.1E-10 1.3E-14 111.3 29.8 99 363-461 492-598 (1088)
54 KOG1173 Anaphase-promoting com 99.4 6.2E-09 1.4E-13 99.5 33.7 399 42-456 40-517 (611)
55 TIGR02521 type_IV_pilW type IV 99.4 1.9E-10 4E-15 105.3 22.8 196 260-456 31-231 (234)
56 KOG4318 Bicoid mRNA stability 99.4 3.1E-11 6.7E-16 120.3 17.8 264 211-514 11-275 (1088)
57 KOG4162 Predicted calmodulin-b 99.4 7.5E-09 1.6E-13 102.5 33.6 397 47-457 317-783 (799)
58 KOG0547 Translocase of outer m 99.3 4E-09 8.7E-14 98.9 28.4 218 200-424 336-567 (606)
59 KOG1174 Anaphase-promoting com 99.3 1.7E-08 3.7E-13 92.7 30.9 303 120-428 192-505 (564)
60 PF13041 PPR_2: PPR repeat fam 99.3 4.5E-12 9.7E-17 83.7 5.0 50 85-134 1-50 (50)
61 KOG1129 TPR repeat-containing 99.3 2.6E-10 5.6E-15 101.2 17.3 227 194-457 227-458 (478)
62 PRK12370 invasion protein regu 99.3 3.5E-09 7.5E-14 109.1 28.1 262 189-459 255-537 (553)
63 PF13041 PPR_2: PPR repeat fam 99.3 1.3E-11 2.8E-16 81.4 6.1 50 188-237 1-50 (50)
64 TIGR02521 type_IV_pilW type IV 99.2 3.4E-09 7.4E-14 96.8 23.8 198 191-423 32-232 (234)
65 KOG1173 Anaphase-promoting com 99.2 1.3E-08 2.9E-13 97.2 26.0 276 156-435 241-530 (611)
66 KOG0624 dsRNA-activated protei 99.2 5.7E-08 1.2E-12 87.2 28.3 295 158-458 37-371 (504)
67 PRK12370 invasion protein regu 99.2 2.9E-09 6.3E-14 109.7 23.1 241 174-424 276-536 (553)
68 KOG1840 Kinesin light chain [C 99.2 7.4E-09 1.6E-13 101.8 22.0 231 192-422 201-478 (508)
69 KOG1129 TPR repeat-containing 99.1 2.1E-09 4.6E-14 95.6 15.4 229 160-393 224-461 (478)
70 KOG1174 Anaphase-promoting com 99.1 6.6E-07 1.4E-11 82.6 31.7 262 188-457 230-500 (564)
71 KOG2047 mRNA splicing factor [ 99.1 1.7E-07 3.8E-12 91.0 29.1 381 70-461 116-582 (835)
72 KOG2376 Signal recognition par 99.1 9.8E-06 2.1E-10 78.6 39.9 176 274-453 321-516 (652)
73 PRK11189 lipoprotein NlpI; Pro 99.1 8.8E-09 1.9E-13 97.1 19.7 147 204-353 40-192 (296)
74 PF12569 NARP1: NMDA receptor- 99.1 5.3E-07 1.1E-11 90.0 32.8 44 410-453 473-516 (517)
75 PRK11189 lipoprotein NlpI; Pro 99.1 5.4E-08 1.2E-12 91.8 24.8 146 172-319 39-193 (296)
76 COG3063 PilF Tfp pilus assembl 99.1 1.2E-08 2.5E-13 86.9 17.3 163 293-459 37-204 (250)
77 KOG1156 N-terminal acetyltrans 99.1 1.1E-06 2.4E-11 85.8 31.6 101 359-459 366-470 (700)
78 KOG1156 N-terminal acetyltrans 99.1 1.4E-06 3.1E-11 85.0 31.9 342 70-425 55-470 (700)
79 PF12569 NARP1: NMDA receptor- 99.0 4.1E-07 8.9E-12 90.8 29.0 121 266-388 200-331 (517)
80 KOG4340 Uncharacterized conser 99.0 1.6E-07 3.4E-12 82.9 22.2 393 48-457 5-443 (459)
81 KOG2047 mRNA splicing factor [ 99.0 2.3E-05 5.1E-10 76.7 38.8 411 72-509 91-583 (835)
82 PF14432 DYW_deaminase: DYW fa 99.0 5.5E-10 1.2E-14 87.4 6.0 76 464-558 2-86 (116)
83 KOG0548 Molecular co-chaperone 99.0 5.1E-07 1.1E-11 86.3 25.1 367 70-458 16-456 (539)
84 COG3063 PilF Tfp pilus assembl 99.0 3.9E-07 8.4E-12 77.8 21.3 87 196-284 41-127 (250)
85 KOG3617 WD40 and TPR repeat-co 99.0 1E-06 2.2E-11 88.0 27.3 356 51-452 724-1169(1416)
86 PF04733 Coatomer_E: Coatomer 98.9 6.6E-08 1.4E-12 89.8 17.9 246 170-427 12-269 (290)
87 KOG1125 TPR repeat-containing 98.9 5.6E-08 1.2E-12 93.5 16.2 216 235-456 295-526 (579)
88 cd05804 StaR_like StaR_like; a 98.9 3.5E-06 7.6E-11 82.5 29.4 195 264-458 118-337 (355)
89 PF04733 Coatomer_E: Coatomer 98.9 3.1E-08 6.6E-13 92.0 13.7 244 198-456 9-264 (290)
90 PRK04841 transcriptional regul 98.9 7.4E-06 1.6E-10 90.9 35.1 328 96-426 383-763 (903)
91 KOG3785 Uncharacterized conser 98.9 3E-06 6.5E-11 76.8 25.3 385 55-461 58-494 (557)
92 cd05804 StaR_like StaR_like; a 98.9 6.6E-06 1.4E-10 80.6 30.7 193 89-286 8-212 (355)
93 KOG0985 Vesicle coat protein c 98.8 2.5E-05 5.4E-10 80.2 33.0 350 38-441 967-1326(1666)
94 PRK04841 transcriptional regul 98.8 4.7E-06 1E-10 92.5 30.9 321 138-458 388-761 (903)
95 KOG3616 Selective LIM binding 98.8 1.8E-06 3.8E-11 85.3 22.5 164 268-452 740-932 (1636)
96 KOG3785 Uncharacterized conser 98.8 2.9E-06 6.3E-11 76.8 22.0 371 70-455 36-455 (557)
97 KOG2376 Signal recognition par 98.8 3E-05 6.4E-10 75.3 29.5 385 50-457 43-487 (652)
98 KOG4162 Predicted calmodulin-b 98.8 7.5E-05 1.6E-09 74.9 33.1 369 51-429 355-789 (799)
99 KOG1070 rRNA processing protei 98.8 9.1E-07 2E-11 93.3 20.8 201 257-461 1455-1667(1710)
100 KOG1128 Uncharacterized conser 98.7 1.1E-06 2.4E-11 87.0 17.7 226 256-506 394-621 (777)
101 KOG3616 Selective LIM binding 98.7 5.8E-05 1.2E-09 75.0 28.9 259 166-458 739-1025(1636)
102 KOG0548 Molecular co-chaperone 98.7 5.6E-05 1.2E-09 72.8 28.1 403 32-452 13-484 (539)
103 TIGR03302 OM_YfiO outer membra 98.7 1.5E-06 3.4E-11 79.4 17.3 182 259-457 32-232 (235)
104 KOG4340 Uncharacterized conser 98.6 4E-06 8.6E-11 74.2 18.0 312 116-453 4-335 (459)
105 PRK10370 formate-dependent nit 98.6 3E-06 6.6E-11 74.3 17.6 148 298-459 23-175 (198)
106 KOG1127 TPR repeat-containing 98.6 1.8E-05 3.9E-10 81.3 24.0 176 38-218 476-658 (1238)
107 PF12854 PPR_1: PPR repeat 98.6 6.7E-08 1.5E-12 57.1 4.2 33 154-186 2-34 (34)
108 KOG0624 dsRNA-activated protei 98.6 0.00014 3E-09 66.0 25.7 331 90-459 41-396 (504)
109 PRK15359 type III secretion sy 98.6 2.5E-06 5.5E-11 70.7 13.7 108 329-438 27-136 (144)
110 KOG1128 Uncharacterized conser 98.5 1.3E-05 2.9E-10 79.6 20.5 217 154-388 393-613 (777)
111 PF12854 PPR_1: PPR repeat 98.5 1.7E-07 3.7E-12 55.3 4.3 32 357-388 2-33 (34)
112 KOG1070 rRNA processing protei 98.5 3E-05 6.5E-10 82.4 23.0 224 224-450 1457-1693(1710)
113 KOG1125 TPR repeat-containing 98.5 2.7E-05 5.9E-10 75.5 21.0 245 131-383 292-563 (579)
114 PRK15359 type III secretion sy 98.5 2.7E-06 5.8E-11 70.6 12.6 107 347-458 14-122 (144)
115 KOG0985 Vesicle coat protein c 98.5 0.00085 1.8E-08 69.5 32.1 340 28-419 991-1337(1666)
116 PLN02789 farnesyltranstransfer 98.5 3.7E-05 8E-10 72.6 21.7 144 309-455 126-300 (320)
117 PRK10370 formate-dependent nit 98.5 2.2E-05 4.8E-10 68.9 17.9 155 267-432 23-182 (198)
118 KOG3081 Vesicle coat complex C 98.5 0.00018 3.8E-09 63.2 22.7 154 267-427 115-275 (299)
119 PRK14720 transcript cleavage f 98.4 5.3E-05 1.2E-09 79.7 22.9 233 158-439 30-268 (906)
120 KOG1914 mRNA cleavage and poly 98.4 0.0021 4.6E-08 62.3 31.2 158 292-452 367-534 (656)
121 COG5010 TadD Flp pilus assembl 98.4 3.5E-05 7.6E-10 67.5 17.8 155 295-452 70-226 (257)
122 KOG3617 WD40 and TPR repeat-co 98.4 7.5E-05 1.6E-09 75.2 21.8 76 297-388 918-993 (1416)
123 TIGR03302 OM_YfiO outer membra 98.4 2.6E-05 5.6E-10 71.3 17.9 182 223-425 31-234 (235)
124 PRK15179 Vi polysaccharide bio 98.4 6.8E-05 1.5E-09 78.1 22.4 126 259-388 85-214 (694)
125 PLN02789 farnesyltranstransfer 98.4 0.00032 6.9E-09 66.3 24.9 202 199-406 46-267 (320)
126 PRK15179 Vi polysaccharide bio 98.4 4E-05 8.6E-10 79.9 20.1 212 224-457 27-245 (694)
127 COG4783 Putative Zn-dependent 98.3 0.00024 5.3E-09 67.9 22.7 117 336-454 316-434 (484)
128 PRK15363 pathogenicity island 98.3 1.3E-05 2.8E-10 65.4 12.2 96 361-456 34-131 (157)
129 KOG1914 mRNA cleavage and poly 98.3 0.0038 8.2E-08 60.6 32.2 397 49-456 16-500 (656)
130 COG4783 Putative Zn-dependent 98.3 0.00018 4E-09 68.7 21.4 145 292-458 307-455 (484)
131 COG5010 TadD Flp pilus assembl 98.3 3.2E-05 7E-10 67.8 14.5 135 323-459 63-199 (257)
132 KOG1127 TPR repeat-containing 98.3 0.00044 9.6E-09 71.5 24.5 376 70-453 472-909 (1238)
133 TIGR02552 LcrH_SycD type III s 98.3 1.2E-05 2.6E-10 66.3 11.3 96 362-457 17-114 (135)
134 KOG3081 Vesicle coat complex C 98.3 0.00052 1.1E-08 60.4 21.1 240 138-388 22-268 (299)
135 KOG2053 Mitochondrial inherita 98.2 0.009 2E-07 61.6 34.9 68 396-463 438-508 (932)
136 TIGR00756 PPR pentatricopeptid 98.2 2.3E-06 5E-11 51.4 4.3 35 88-122 1-35 (35)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 3.1E-05 6.8E-10 74.5 13.7 124 327-455 170-295 (395)
138 PRK14720 transcript cleavage f 98.2 0.0016 3.5E-08 69.0 26.2 235 86-373 30-268 (906)
139 KOG3060 Uncharacterized conser 98.1 0.0008 1.7E-08 58.8 19.6 164 264-430 56-227 (289)
140 PF13812 PPR_3: Pentatricopept 98.1 3.7E-06 7.9E-11 50.1 4.0 34 87-120 1-34 (34)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 9.5E-05 2.1E-09 71.3 15.6 128 262-392 171-298 (395)
142 KOG0550 Molecular chaperone (D 98.1 0.00037 8.1E-09 65.0 17.9 264 166-457 56-350 (486)
143 TIGR02552 LcrH_SycD type III s 98.1 0.00012 2.5E-09 60.3 13.4 113 313-429 5-120 (135)
144 TIGR00756 PPR pentatricopeptid 98.1 6.1E-06 1.3E-10 49.5 4.1 34 191-224 1-34 (35)
145 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.3E-10 48.0 4.1 33 191-223 2-34 (34)
146 KOG3060 Uncharacterized conser 98.0 0.00097 2.1E-08 58.3 17.3 164 293-460 54-223 (289)
147 PF12895 Apc3: Anaphase-promot 98.0 9.3E-06 2E-10 60.4 4.5 78 375-453 2-83 (84)
148 PF09976 TPR_21: Tetratricopep 98.0 0.00028 6.2E-09 58.7 13.4 52 400-452 91-142 (145)
149 cd00189 TPR Tetratricopeptide 97.9 9E-05 2E-09 56.2 9.8 92 365-456 3-96 (100)
150 PF09976 TPR_21: Tetratricopep 97.9 0.00071 1.5E-08 56.3 15.5 125 294-420 15-144 (145)
151 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00027 5.9E-09 56.5 11.7 100 330-429 6-111 (119)
152 PF08579 RPM2: Mitochondrial r 97.9 0.00018 3.8E-09 54.5 9.3 82 90-171 28-116 (120)
153 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00023 5E-09 56.9 10.8 96 363-458 3-106 (119)
154 KOG1538 Uncharacterized conser 97.8 0.0055 1.2E-07 60.6 21.2 198 124-389 600-800 (1081)
155 PF13414 TPR_11: TPR repeat; P 97.8 5.1E-05 1.1E-09 53.9 5.9 64 393-456 2-66 (69)
156 PLN03088 SGT1, suppressor of 97.8 0.00044 9.6E-09 67.0 13.7 85 372-456 12-98 (356)
157 PF01535 PPR: PPR repeat; Int 97.8 3E-05 6.5E-10 44.9 3.4 31 88-118 1-31 (31)
158 PF13432 TPR_16: Tetratricopep 97.7 9.9E-05 2.1E-09 51.6 5.8 58 400-457 3-60 (65)
159 PF14938 SNAP: Soluble NSF att 97.7 0.003 6.4E-08 59.3 16.9 20 197-216 42-61 (282)
160 PF01535 PPR: PPR repeat; Int 97.7 5.2E-05 1.1E-09 43.8 3.1 29 192-220 2-30 (31)
161 KOG0553 TPR repeat-containing 97.7 0.0002 4.3E-09 64.2 8.0 91 336-428 91-183 (304)
162 PF07079 DUF1347: Protein of u 97.7 0.061 1.3E-06 51.5 30.0 379 63-455 16-522 (549)
163 PRK02603 photosystem I assembl 97.7 0.00057 1.2E-08 58.8 10.8 94 363-456 36-148 (172)
164 cd00189 TPR Tetratricopeptide 97.6 0.00072 1.6E-08 51.1 10.3 90 334-425 8-99 (100)
165 PF14938 SNAP: Soluble NSF att 97.6 0.016 3.5E-07 54.3 21.0 210 138-389 29-264 (282)
166 PLN03088 SGT1, suppressor of 97.6 0.0011 2.4E-08 64.2 13.0 101 335-437 11-113 (356)
167 PRK10153 DNA-binding transcrip 97.6 0.0033 7.2E-08 63.7 16.7 138 289-428 335-487 (517)
168 CHL00033 ycf3 photosystem I as 97.6 0.00073 1.6E-08 57.9 10.5 94 361-454 34-139 (168)
169 KOG2053 Mitochondrial inherita 97.6 0.14 2.9E-06 53.4 30.7 221 96-321 18-256 (932)
170 PF10037 MRP-S27: Mitochondria 97.6 0.0015 3.3E-08 63.4 13.5 120 48-172 61-186 (429)
171 COG4700 Uncharacterized protei 97.6 0.01 2.3E-07 49.4 16.1 133 322-456 85-221 (251)
172 COG3898 Uncharacterized membra 97.6 0.071 1.5E-06 50.0 25.2 289 89-388 84-389 (531)
173 PF04840 Vps16_C: Vps16, C-ter 97.6 0.079 1.7E-06 50.2 24.7 111 327-454 178-288 (319)
174 PRK02603 photosystem I assembl 97.5 0.0027 6E-08 54.6 13.4 131 290-443 34-166 (172)
175 KOG0553 TPR repeat-containing 97.5 0.00087 1.9E-08 60.3 10.1 97 298-399 88-187 (304)
176 COG4235 Cytochrome c biogenesi 97.5 0.0055 1.2E-07 55.6 15.1 104 358-461 152-260 (287)
177 PF13432 TPR_16: Tetratricopep 97.5 0.00033 7.2E-09 48.9 6.0 61 368-428 3-65 (65)
178 PF08579 RPM2: Mitochondrial r 97.5 0.0017 3.7E-08 49.3 9.7 79 295-374 29-116 (120)
179 PF12895 Apc3: Anaphase-promot 97.5 0.00035 7.5E-09 51.8 6.0 79 304-386 2-82 (84)
180 PF05843 Suf: Suppressor of fo 97.5 0.0039 8.4E-08 58.2 14.2 133 292-427 2-140 (280)
181 PF10037 MRP-S27: Mitochondria 97.4 0.0017 3.8E-08 63.0 11.9 119 155-273 62-186 (429)
182 PF14559 TPR_19: Tetratricopep 97.4 0.00017 3.6E-09 51.0 3.7 52 405-456 2-53 (68)
183 PF13371 TPR_9: Tetratricopept 97.4 0.00053 1.2E-08 49.2 6.3 59 401-459 2-60 (73)
184 KOG1130 Predicted G-alpha GTPa 97.4 0.0011 2.4E-08 61.8 9.4 129 327-455 196-342 (639)
185 PF05843 Suf: Suppressor of fo 97.3 0.0025 5.5E-08 59.5 11.2 129 327-457 2-136 (280)
186 CHL00033 ycf3 photosystem I as 97.3 0.0072 1.6E-07 51.8 12.8 63 292-354 36-100 (168)
187 PRK10866 outer membrane biogen 97.3 0.059 1.3E-06 49.1 19.1 52 299-350 183-236 (243)
188 PF06239 ECSIT: Evolutionarily 97.2 0.0017 3.6E-08 55.9 8.2 105 49-174 43-153 (228)
189 KOG2041 WD40 repeat protein [G 97.2 0.29 6.3E-06 49.5 25.5 134 138-289 748-907 (1189)
190 PF13414 TPR_11: TPR repeat; P 97.2 0.001 2.2E-08 47.1 5.7 65 361-425 2-69 (69)
191 PRK15331 chaperone protein Sic 97.2 0.0047 1E-07 51.0 10.0 89 368-456 43-133 (165)
192 PRK15363 pathogenicity island 97.2 0.013 2.7E-07 48.2 12.4 89 266-355 41-132 (157)
193 PRK10153 DNA-binding transcrip 97.2 0.016 3.4E-07 58.9 15.8 135 321-459 332-484 (517)
194 PRK10866 outer membrane biogen 97.1 0.19 4.2E-06 45.7 22.1 66 189-256 31-100 (243)
195 KOG2041 WD40 repeat protein [G 97.1 0.09 2E-06 53.0 19.9 189 238-456 747-951 (1189)
196 PF14559 TPR_19: Tetratricopep 97.1 0.00063 1.4E-08 48.0 4.0 49 338-388 3-51 (68)
197 PRK10803 tol-pal system protei 97.1 0.0043 9.4E-08 56.8 10.3 95 363-457 144-246 (263)
198 KOG2796 Uncharacterized conser 97.1 0.023 5.1E-07 50.1 14.0 140 191-332 178-325 (366)
199 PF06239 ECSIT: Evolutionarily 97.1 0.0048 1E-07 53.2 9.6 96 180-275 35-153 (228)
200 PF12688 TPR_5: Tetratrico pep 97.1 0.025 5.4E-07 44.7 12.6 106 196-301 7-116 (120)
201 KOG1130 Predicted G-alpha GTPa 97.0 0.0025 5.4E-08 59.6 7.9 257 95-354 25-343 (639)
202 PF12688 TPR_5: Tetratrico pep 97.0 0.026 5.7E-07 44.6 12.2 92 297-388 7-101 (120)
203 PF04840 Vps16_C: Vps16, C-ter 97.0 0.35 7.7E-06 45.8 28.8 105 266-387 183-287 (319)
204 COG4700 Uncharacterized protei 97.0 0.14 2.9E-06 43.0 16.3 113 264-381 93-212 (251)
205 KOG1538 Uncharacterized conser 96.9 0.097 2.1E-06 52.3 17.8 84 227-319 749-845 (1081)
206 KOG2796 Uncharacterized conser 96.9 0.097 2.1E-06 46.4 15.8 133 294-427 180-319 (366)
207 KOG2280 Vacuolar assembly/sort 96.9 0.66 1.4E-05 47.6 29.6 117 321-453 679-795 (829)
208 PF03704 BTAD: Bacterial trans 96.9 0.0027 6E-08 52.9 6.3 68 396-463 64-136 (146)
209 COG3898 Uncharacterized membra 96.9 0.42 9.2E-06 45.1 27.2 273 172-457 97-392 (531)
210 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.0049 1.1E-07 59.5 8.4 63 394-456 75-140 (453)
211 KOG0550 Molecular chaperone (D 96.8 0.44 9.5E-06 45.3 20.2 85 301-388 259-347 (486)
212 PF13525 YfiO: Outer membrane 96.8 0.062 1.3E-06 47.5 14.3 161 269-448 14-198 (203)
213 PF13431 TPR_17: Tetratricopep 96.8 0.00081 1.8E-08 39.5 1.5 33 416-448 1-33 (34)
214 PF13281 DUF4071: Domain of un 96.8 0.18 3.9E-06 48.3 17.9 72 265-336 146-227 (374)
215 PF13424 TPR_12: Tetratricopep 96.7 0.0029 6.3E-08 46.0 4.5 62 395-456 6-74 (78)
216 PF13428 TPR_14: Tetratricopep 96.7 0.0025 5.5E-08 40.2 3.6 42 395-436 2-43 (44)
217 KOG0543 FKBP-type peptidyl-pro 96.6 0.029 6.3E-07 53.0 11.6 63 395-457 258-320 (397)
218 PRK10803 tol-pal system protei 96.6 0.043 9.4E-07 50.4 12.5 102 327-428 144-251 (263)
219 KOG1585 Protein required for f 96.6 0.35 7.6E-06 42.6 16.8 200 227-451 33-250 (308)
220 PF13371 TPR_9: Tetratricopept 96.6 0.0076 1.7E-07 43.1 6.0 63 369-431 2-66 (73)
221 COG5107 RNA14 Pre-mRNA 3'-end 96.6 0.81 1.7E-05 44.1 30.3 409 38-456 29-530 (660)
222 PF12921 ATP13: Mitochondrial 96.5 0.043 9.4E-07 43.8 10.2 50 322-371 48-97 (126)
223 PF13424 TPR_12: Tetratricopep 96.4 0.0054 1.2E-07 44.6 4.5 61 363-423 6-75 (78)
224 PF07079 DUF1347: Protein of u 96.3 1.1 2.4E-05 43.3 29.4 117 301-420 389-521 (549)
225 PF13525 YfiO: Outer membrane 96.3 0.7 1.5E-05 40.8 18.4 59 196-254 11-71 (203)
226 COG4235 Cytochrome c biogenesi 96.3 0.18 4E-06 46.0 14.1 102 325-428 155-261 (287)
227 KOG2280 Vacuolar assembly/sort 96.2 1.8 3.8E-05 44.7 24.1 303 128-455 443-771 (829)
228 PF13281 DUF4071: Domain of un 96.2 0.73 1.6E-05 44.3 18.3 73 163-235 145-227 (374)
229 KOG0543 FKBP-type peptidyl-pro 96.1 0.076 1.6E-06 50.3 11.2 138 297-456 214-354 (397)
230 PF10300 DUF3808: Protein of u 96.1 1.9 4.2E-05 43.6 22.4 162 89-253 190-375 (468)
231 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.046 9.9E-07 53.0 9.5 64 361-424 74-142 (453)
232 PF13512 TPR_18: Tetratricopep 96.0 0.21 4.5E-06 40.4 11.6 61 370-430 18-83 (142)
233 KOG3941 Intermediate in Toll s 95.9 0.04 8.7E-07 49.2 7.9 117 70-186 48-186 (406)
234 PF09205 DUF1955: Domain of un 95.9 0.66 1.4E-05 36.7 14.3 140 302-460 13-152 (161)
235 KOG1920 IkappaB kinase complex 95.8 2.3 4.9E-05 46.4 21.4 81 333-420 972-1052(1265)
236 COG3118 Thioredoxin domain-con 95.7 0.96 2.1E-05 41.3 15.9 147 299-447 142-291 (304)
237 COG4105 ComL DNA uptake lipopr 95.7 1.3 2.7E-05 39.8 16.3 166 270-455 44-231 (254)
238 PF03704 BTAD: Bacterial trans 95.7 0.32 6.8E-06 40.4 12.4 71 293-364 64-138 (146)
239 PF10300 DUF3808: Protein of u 95.6 0.62 1.3E-05 47.1 16.3 160 294-456 191-375 (468)
240 PF04184 ST7: ST7 protein; In 95.6 0.2 4.4E-06 48.9 11.8 200 298-509 175-381 (539)
241 KOG4555 TPR repeat-containing 95.5 0.14 3E-06 40.2 8.5 91 370-460 51-147 (175)
242 PF12921 ATP13: Mitochondrial 95.5 0.18 3.8E-06 40.4 9.6 47 357-403 47-97 (126)
243 COG0457 NrfG FOG: TPR repeat [ 95.5 1.7 3.7E-05 38.8 26.4 194 261-456 60-264 (291)
244 COG1729 Uncharacterized protei 95.4 0.1 2.3E-06 46.9 8.8 92 364-456 144-243 (262)
245 PF04053 Coatomer_WDAD: Coatom 95.3 0.96 2.1E-05 45.1 16.1 159 198-389 269-429 (443)
246 COG5107 RNA14 Pre-mRNA 3'-end 95.2 0.5 1.1E-05 45.5 12.8 128 123-254 398-531 (660)
247 COG0457 NrfG FOG: TPR repeat [ 95.0 2.4 5.3E-05 37.7 25.9 197 226-426 60-268 (291)
248 KOG1920 IkappaB kinase complex 95.0 3.5 7.6E-05 45.0 19.5 111 262-389 941-1053(1265)
249 PRK11619 lytic murein transgly 94.8 6.3 0.00014 41.6 29.0 115 304-421 254-373 (644)
250 KOG1258 mRNA processing protei 94.8 5.1 0.00011 40.5 31.2 382 52-443 44-490 (577)
251 PF13512 TPR_18: Tetratricopep 94.8 1.1 2.3E-05 36.4 12.0 19 410-428 115-133 (142)
252 KOG1941 Acetylcholine receptor 94.8 0.37 8E-06 44.9 10.5 46 201-246 17-64 (518)
253 KOG3941 Intermediate in Toll s 94.7 0.27 5.8E-06 44.2 9.2 100 177-276 52-174 (406)
254 PF09205 DUF1955: Domain of un 94.7 1.4 3E-05 34.9 11.9 62 194-256 90-151 (161)
255 PF07719 TPR_2: Tetratricopept 94.7 0.098 2.1E-06 30.4 4.6 33 395-427 2-34 (34)
256 PRK11906 transcriptional regul 94.6 0.69 1.5E-05 45.2 12.5 62 393-454 337-398 (458)
257 PF00515 TPR_1: Tetratricopept 94.6 0.075 1.6E-06 31.0 4.0 32 395-426 2-33 (34)
258 PF04053 Coatomer_WDAD: Coatom 94.5 1.1 2.4E-05 44.7 14.1 154 98-285 272-427 (443)
259 PRK15331 chaperone protein Sic 94.5 1.1 2.4E-05 37.3 11.7 49 303-352 49-97 (165)
260 smart00299 CLH Clathrin heavy 94.5 2.2 4.9E-05 34.9 14.6 42 231-273 13-54 (140)
261 COG1729 Uncharacterized protei 94.5 0.4 8.7E-06 43.2 9.9 101 328-429 144-250 (262)
262 PF04184 ST7: ST7 protein; In 94.3 5.3 0.00012 39.5 17.5 52 200-254 178-229 (539)
263 PRK11906 transcriptional regul 94.1 2.4 5.2E-05 41.6 14.8 144 307-453 274-432 (458)
264 KOG2610 Uncharacterized conser 94.1 1.9 4.1E-05 40.0 13.2 155 272-429 115-284 (491)
265 KOG1585 Protein required for f 94.0 4.2 9.1E-05 36.1 17.1 104 90-217 34-137 (308)
266 PF02259 FAT: FAT domain; Int 93.7 7.3 0.00016 37.8 18.9 149 290-441 145-305 (352)
267 KOG1941 Acetylcholine receptor 93.6 3.2 7E-05 39.0 13.9 193 161-353 45-273 (518)
268 smart00299 CLH Clathrin heavy 93.5 3.6 7.8E-05 33.7 15.0 45 90-135 10-54 (140)
269 COG3629 DnrI DNA-binding trans 93.2 0.42 9.1E-06 43.8 7.7 67 395-461 154-225 (280)
270 PF13170 DUF4003: Protein of u 92.8 2.7 5.8E-05 39.5 12.8 149 17-167 56-225 (297)
271 PF13170 DUF4003: Protein of u 92.8 2.3 4.9E-05 39.9 12.3 130 139-270 77-227 (297)
272 KOG2610 Uncharacterized conser 92.7 1.1 2.4E-05 41.5 9.5 160 302-464 114-283 (491)
273 KOG2114 Vacuolar assembly/sort 92.6 5.6 0.00012 41.8 15.3 178 228-420 337-516 (933)
274 COG4649 Uncharacterized protei 92.5 5.7 0.00012 33.3 13.6 27 430-456 169-195 (221)
275 KOG2114 Vacuolar assembly/sort 92.3 17 0.00037 38.5 26.4 176 55-251 336-516 (933)
276 KOG4555 TPR repeat-containing 92.2 1.1 2.4E-05 35.4 7.6 89 336-426 53-147 (175)
277 KOG2066 Vacuolar assembly/sort 92.2 17 0.00037 38.1 23.6 68 331-410 639-706 (846)
278 PF13176 TPR_7: Tetratricopept 92.0 0.3 6.5E-06 29.0 3.6 25 397-421 2-26 (36)
279 PF13181 TPR_8: Tetratricopept 91.9 0.32 7E-06 28.2 3.7 31 396-426 3-33 (34)
280 COG1747 Uncharacterized N-term 91.9 14 0.00031 36.7 22.8 174 257-437 63-248 (711)
281 PF02259 FAT: FAT domain; Int 91.8 8.8 0.00019 37.2 15.9 65 393-457 145-213 (352)
282 COG3118 Thioredoxin domain-con 91.7 11 0.00024 34.8 18.1 119 232-354 141-264 (304)
283 KOG0890 Protein kinase of the 91.6 37 0.0008 40.7 24.5 305 138-459 1397-1733(2382)
284 PF08631 SPO22: Meiosis protei 91.5 12 0.00026 34.9 25.2 17 404-420 256-272 (278)
285 PF13176 TPR_7: Tetratricopept 91.5 0.33 7.1E-06 28.8 3.4 26 430-455 1-26 (36)
286 KOG4234 TPR repeat-containing 91.3 0.7 1.5E-05 39.4 6.2 86 372-457 105-197 (271)
287 PF10602 RPN7: 26S proteasome 91.2 5.1 0.00011 34.4 11.7 94 293-388 38-139 (177)
288 COG3629 DnrI DNA-binding trans 90.9 2 4.4E-05 39.5 9.3 76 260-335 153-236 (280)
289 COG4649 Uncharacterized protei 90.1 3.6 7.7E-05 34.5 9.0 137 86-224 58-201 (221)
290 COG4785 NlpI Lipoprotein NlpI, 89.3 14 0.00031 32.3 13.6 163 290-459 98-268 (297)
291 PF14853 Fis1_TPR_C: Fis1 C-te 89.3 2.8 6E-05 27.5 6.5 50 431-506 4-53 (53)
292 KOG1586 Protein required for f 89.2 15 0.00034 32.5 13.1 53 404-456 164-223 (288)
293 PF04097 Nic96: Nup93/Nic96; 89.1 33 0.00072 36.3 19.3 66 86-153 111-181 (613)
294 KOG4570 Uncharacterized conser 88.8 3.9 8.5E-05 37.7 9.2 97 255-355 59-164 (418)
295 PRK09687 putative lyase; Provi 88.7 21 0.00045 33.4 25.9 181 156-341 34-221 (280)
296 PF00515 TPR_1: Tetratricopept 88.6 1.2 2.6E-05 25.7 4.2 27 293-319 3-29 (34)
297 KOG4648 Uncharacterized conser 88.5 0.84 1.8E-05 42.3 4.9 95 332-429 103-200 (536)
298 PF13428 TPR_14: Tetratricopep 88.2 1.3 2.8E-05 27.6 4.4 26 294-319 4-29 (44)
299 TIGR02561 HrpB1_HrpK type III 88.1 3.5 7.7E-05 33.6 7.7 68 374-443 22-93 (153)
300 PF10602 RPN7: 26S proteasome 87.9 8.2 0.00018 33.1 10.5 93 262-354 38-141 (177)
301 KOG0276 Vesicle coat complex C 87.9 15 0.00032 37.4 13.1 150 271-454 597-747 (794)
302 KOG1550 Extracellular protein 87.7 27 0.00059 36.4 16.1 82 377-459 343-428 (552)
303 PF08631 SPO22: Meiosis protei 87.6 24 0.00053 32.9 24.8 60 293-354 86-149 (278)
304 KOG1550 Extracellular protein 87.5 39 0.00085 35.2 22.1 270 175-457 228-538 (552)
305 PF04097 Nic96: Nup93/Nic96; 87.5 42 0.00091 35.5 17.6 43 54-100 113-158 (613)
306 PF13174 TPR_6: Tetratricopept 87.1 1.2 2.7E-05 25.3 3.6 27 400-426 6-32 (33)
307 PF09613 HrpB1_HrpK: Bacterial 87.0 17 0.00036 30.4 13.0 86 337-425 21-108 (160)
308 KOG4570 Uncharacterized conser 86.9 3.4 7.4E-05 38.1 7.7 101 47-154 58-165 (418)
309 PF02284 COX5A: Cytochrome c o 86.6 5.5 0.00012 30.0 7.3 61 308-370 27-87 (108)
310 PF13431 TPR_17: Tetratricopep 86.2 1.4 3.1E-05 25.6 3.4 32 147-179 2-33 (34)
311 KOG3364 Membrane protein invol 86.1 12 0.00025 30.1 9.3 62 395-456 33-99 (149)
312 PRK15180 Vi polysaccharide bio 85.6 16 0.00035 36.0 11.8 125 338-464 301-427 (831)
313 PF00637 Clathrin: Region in C 85.6 0.65 1.4E-05 38.3 2.5 85 93-186 13-97 (143)
314 cd00923 Cyt_c_Oxidase_Va Cytoc 85.4 6.9 0.00015 29.2 7.3 61 206-267 23-83 (103)
315 PF07719 TPR_2: Tetratricopept 85.4 2.3 5E-05 24.3 4.2 27 293-319 3-29 (34)
316 PF09613 HrpB1_HrpK: Bacterial 85.2 21 0.00045 29.8 12.8 48 138-187 24-72 (160)
317 PF13374 TPR_10: Tetratricopep 85.1 2 4.3E-05 26.0 4.1 28 395-422 3-30 (42)
318 KOG1464 COP9 signalosome, subu 84.9 30 0.00065 31.4 17.2 269 117-419 21-328 (440)
319 PF10345 Cohesin_load: Cohesin 84.9 57 0.0012 34.6 29.8 197 48-252 25-252 (608)
320 COG1747 Uncharacterized N-term 84.5 47 0.001 33.3 18.5 175 188-371 64-248 (711)
321 COG2909 MalT ATP-dependent tra 84.3 65 0.0014 34.7 26.1 215 236-453 426-684 (894)
322 KOG1258 mRNA processing protei 84.1 53 0.0011 33.6 25.1 339 85-449 43-421 (577)
323 cd00923 Cyt_c_Oxidase_Va Cytoc 83.7 15 0.00034 27.4 8.4 63 306-370 22-84 (103)
324 PRK10941 hypothetical protein; 83.5 15 0.00032 34.0 10.5 62 396-457 183-244 (269)
325 PRK09687 putative lyase; Provi 83.2 40 0.00087 31.5 25.3 138 188-337 140-278 (280)
326 PF02284 COX5A: Cytochrome c o 83.1 10 0.00022 28.7 7.3 59 208-267 28-86 (108)
327 PF07721 TPR_4: Tetratricopept 82.8 1.5 3.3E-05 23.6 2.4 22 431-452 4-25 (26)
328 smart00028 TPR Tetratricopepti 82.4 3.2 6.9E-05 22.7 4.0 30 396-425 3-32 (34)
329 TIGR02508 type_III_yscG type I 82.1 19 0.00042 27.1 9.9 88 138-229 19-106 (115)
330 COG4455 ImpE Protein of avirul 81.5 6.6 0.00014 34.3 6.8 73 364-436 3-80 (273)
331 PF00637 Clathrin: Region in C 81.4 0.72 1.6E-05 38.0 1.1 83 231-316 13-95 (143)
332 KOG4648 Uncharacterized conser 81.4 4.7 0.0001 37.6 6.3 86 297-393 103-197 (536)
333 PF13929 mRNA_stabil: mRNA sta 80.7 43 0.00094 31.0 12.1 53 156-208 199-256 (292)
334 PF13374 TPR_10: Tetratricopep 80.7 4.6 0.0001 24.3 4.5 27 293-319 4-30 (42)
335 PF13174 TPR_6: Tetratricopept 80.4 2.1 4.5E-05 24.3 2.6 28 430-457 2-29 (33)
336 COG3947 Response regulator con 80.4 5.9 0.00013 36.2 6.4 60 396-455 281-340 (361)
337 PF10345 Cohesin_load: Cohesin 80.1 86 0.0019 33.3 29.6 125 57-185 104-251 (608)
338 TIGR02561 HrpB1_HrpK type III 80.0 32 0.00069 28.3 11.5 48 138-187 24-72 (153)
339 PF11207 DUF2989: Protein of u 79.9 27 0.00059 30.4 10.0 73 207-280 123-198 (203)
340 KOG0890 Protein kinase of the 79.8 1.5E+02 0.0033 36.0 22.4 146 93-249 1389-1542(2382)
341 PF13181 TPR_8: Tetratricopept 79.8 3.5 7.6E-05 23.6 3.5 28 429-456 2-29 (34)
342 PRK11619 lytic murein transgly 79.3 92 0.002 33.2 38.0 95 369-463 414-511 (644)
343 KOG4642 Chaperone-dependent E3 79.2 4.6 0.0001 35.8 5.2 85 336-423 20-107 (284)
344 PF14853 Fis1_TPR_C: Fis1 C-te 79.0 5.1 0.00011 26.3 4.2 32 398-429 5-36 (53)
345 PF07035 Mic1: Colon cancer-as 78.6 40 0.00086 28.5 15.5 37 146-182 16-52 (167)
346 KOG4234 TPR repeat-containing 78.0 35 0.00076 29.6 9.8 94 337-432 106-206 (271)
347 PF11207 DUF2989: Protein of u 77.8 25 0.00054 30.6 9.2 72 104-178 123-197 (203)
348 PF07035 Mic1: Colon cancer-as 77.7 42 0.00091 28.4 14.9 98 109-216 16-115 (167)
349 COG4105 ComL DNA uptake lipopr 77.7 55 0.0012 29.7 22.5 75 197-271 41-117 (254)
350 COG4455 ImpE Protein of avirul 76.9 11 0.00023 33.1 6.7 58 125-185 4-61 (273)
351 PF13762 MNE1: Mitochondrial s 76.8 40 0.00087 27.7 9.8 88 44-134 28-127 (145)
352 COG2976 Uncharacterized protei 76.1 51 0.0011 28.5 14.1 114 309-425 70-190 (207)
353 KOG0276 Vesicle coat complex C 75.7 33 0.00071 35.1 10.5 98 170-284 648-745 (794)
354 COG2976 Uncharacterized protei 75.6 53 0.0011 28.4 14.1 89 233-321 97-189 (207)
355 KOG4279 Serine/threonine prote 75.0 1.2E+02 0.0026 32.2 14.4 184 192-429 203-401 (1226)
356 COG4785 NlpI Lipoprotein NlpI, 74.9 59 0.0013 28.7 14.5 158 260-424 99-267 (297)
357 TIGR02508 type_III_yscG type I 74.8 34 0.00074 25.9 9.4 86 241-330 21-106 (115)
358 KOG4507 Uncharacterized conser 74.1 7.8 0.00017 39.1 5.9 98 338-438 619-720 (886)
359 TIGR03504 FimV_Cterm FimV C-te 73.4 6.2 0.00014 24.6 3.4 28 432-459 3-30 (44)
360 KOG0545 Aryl-hydrocarbon recep 73.1 31 0.00067 30.9 8.6 89 369-457 185-293 (329)
361 PF06552 TOM20_plant: Plant sp 71.2 12 0.00027 31.7 5.6 66 389-461 63-140 (186)
362 PRK13800 putative oxidoreducta 71.0 1.8E+02 0.004 32.6 30.4 46 50-98 632-677 (897)
363 KOG0376 Serine-threonine phosp 70.8 9.6 0.00021 37.5 5.6 87 370-456 12-100 (476)
364 PF10579 Rapsyn_N: Rapsyn N-te 70.4 15 0.00032 26.3 5.0 42 305-346 20-63 (80)
365 PF10579 Rapsyn_N: Rapsyn N-te 70.0 9.7 0.00021 27.2 4.0 45 406-450 18-65 (80)
366 PF04190 DUF410: Protein of un 69.7 93 0.002 28.7 17.8 159 171-355 2-170 (260)
367 KOG1308 Hsp70-interacting prot 69.1 4.1 8.8E-05 38.2 2.6 87 375-461 127-215 (377)
368 PF09670 Cas_Cas02710: CRISPR- 69.1 91 0.002 30.7 12.1 54 300-354 140-197 (379)
369 PF10366 Vps39_1: Vacuolar sor 68.7 44 0.00095 25.9 7.9 27 293-319 41-67 (108)
370 PF08311 Mad3_BUB1_I: Mad3/BUB 68.7 29 0.00063 27.8 7.2 42 412-453 81-124 (126)
371 KOG2063 Vacuolar assembly/sort 68.1 1.9E+02 0.0042 31.8 16.6 189 56-271 507-743 (877)
372 TIGR03504 FimV_Cterm FimV C-te 67.9 14 0.0003 23.1 4.0 24 297-320 5-28 (44)
373 KOG2066 Vacuolar assembly/sort 67.8 1.8E+02 0.0038 31.2 25.3 146 138-291 370-536 (846)
374 PF09477 Type_III_YscG: Bacter 67.0 56 0.0012 25.1 9.9 87 138-228 20-106 (116)
375 PRK13342 recombination factor 66.8 1.4E+02 0.0031 29.7 13.5 47 193-239 230-279 (413)
376 PHA02875 ankyrin repeat protei 66.6 97 0.0021 30.9 12.3 69 39-110 16-88 (413)
377 KOG2300 Uncharacterized conser 65.5 1.5E+02 0.0034 29.7 25.8 152 100-253 60-240 (629)
378 PF07163 Pex26: Pex26 protein; 65.3 71 0.0015 29.4 9.4 87 197-283 90-181 (309)
379 PF14561 TPR_20: Tetratricopep 65.2 13 0.00029 27.6 4.3 40 417-456 11-50 (90)
380 PF06552 TOM20_plant: Plant sp 65.1 15 0.00032 31.3 4.9 47 410-456 51-108 (186)
381 PF14669 Asp_Glu_race_2: Putat 65.0 92 0.002 26.9 15.1 56 229-284 136-205 (233)
382 PRK15180 Vi polysaccharide bio 64.3 1.6E+02 0.0035 29.4 26.6 110 38-155 310-422 (831)
383 KOG1586 Protein required for f 63.5 1.1E+02 0.0025 27.4 15.6 91 340-430 128-231 (288)
384 PF07163 Pex26: Pex26 protein; 63.4 90 0.0019 28.8 9.7 85 298-385 90-181 (309)
385 KOG0687 26S proteasome regulat 63.0 1.4E+02 0.003 28.3 11.7 96 327-424 105-211 (393)
386 KOG3807 Predicted membrane pro 62.6 93 0.002 29.3 9.8 52 299-352 283-337 (556)
387 cd08819 CARD_MDA5_2 Caspase ac 62.5 57 0.0012 24.0 6.8 67 142-210 20-86 (88)
388 KOG4077 Cytochrome c oxidase, 62.4 58 0.0013 25.9 7.2 59 309-369 67-125 (149)
389 KOG0403 Neoplastic transformat 61.1 1.8E+02 0.0039 28.9 19.3 93 365-460 512-614 (645)
390 PF13762 MNE1: Mitochondrial s 59.3 99 0.0022 25.4 11.3 80 161-240 41-130 (145)
391 cd08819 CARD_MDA5_2 Caspase ac 59.2 66 0.0014 23.6 6.7 38 272-310 48-85 (88)
392 smart00386 HAT HAT (Half-A-TPR 59.1 13 0.00028 20.6 2.8 29 408-436 1-29 (33)
393 PF09986 DUF2225: Uncharacteri 59.1 58 0.0013 29.0 8.0 64 396-459 120-196 (214)
394 KOG4521 Nuclear pore complex, 59.0 3.1E+02 0.0067 31.0 14.5 121 328-450 985-1124(1480)
395 KOG1464 COP9 signalosome, subu 58.9 1.5E+02 0.0032 27.2 17.4 196 188-383 24-252 (440)
396 KOG4077 Cytochrome c oxidase, 58.5 65 0.0014 25.6 6.9 46 209-254 68-113 (149)
397 PF10366 Vps39_1: Vacuolar sor 58.3 51 0.0011 25.5 6.6 27 192-218 41-67 (108)
398 PF12862 Apc5: Anaphase-promot 58.2 36 0.00078 25.4 5.7 52 405-456 9-69 (94)
399 COG3947 Response regulator con 57.9 1.6E+02 0.0035 27.4 14.3 59 193-252 282-340 (361)
400 KOG3364 Membrane protein invol 57.5 47 0.001 26.8 6.1 70 359-428 29-105 (149)
401 PF12926 MOZART2: Mitotic-spin 57.3 74 0.0016 23.3 7.7 62 20-84 9-71 (88)
402 KOG2471 TPR repeat-containing 56.9 2.2E+02 0.0048 28.7 14.2 109 402-512 214-327 (696)
403 PRK12798 chemotaxis protein; R 56.7 2.1E+02 0.0045 28.3 22.5 184 273-459 125-326 (421)
404 COG2909 MalT ATP-dependent tra 56.3 3E+02 0.0066 30.0 29.6 219 169-388 425-685 (894)
405 KOG4642 Chaperone-dependent E3 56.2 1.4E+02 0.003 27.0 9.3 82 270-353 20-105 (284)
406 PF04190 DUF410: Protein of un 56.0 1.7E+02 0.0037 27.0 16.7 158 70-254 4-170 (260)
407 smart00777 Mad3_BUB1_I Mad3/BU 54.9 86 0.0019 25.0 7.4 42 411-452 80-123 (125)
408 PRK13342 recombination factor 54.2 2.4E+02 0.0052 28.2 14.9 43 294-336 230-275 (413)
409 PF11846 DUF3366: Domain of un 54.0 56 0.0012 28.5 7.1 37 389-425 139-175 (193)
410 PRK14700 recombination factor 52.8 2E+02 0.0044 27.0 14.1 125 118-257 63-198 (300)
411 PF04762 IKI3: IKI3 family; I 52.1 3.1E+02 0.0068 30.9 13.7 29 261-289 813-843 (928)
412 PF08967 DUF1884: Domain of un 51.5 18 0.0004 25.8 2.8 27 486-512 6-32 (85)
413 PF11846 DUF3366: Domain of un 51.5 54 0.0012 28.5 6.6 32 357-388 139-170 (193)
414 PHA02875 ankyrin repeat protei 50.4 2.7E+02 0.0058 27.7 15.9 147 166-326 72-230 (413)
415 KOG4507 Uncharacterized conser 50.3 84 0.0018 32.2 8.0 134 323-458 568-706 (886)
416 PF11838 ERAP1_C: ERAP1-like C 49.7 2.4E+02 0.0051 26.8 15.7 82 138-219 144-230 (324)
417 COG4976 Predicted methyltransf 49.5 27 0.00057 31.0 4.0 54 374-427 7-62 (287)
418 PF04910 Tcf25: Transcriptiona 49.4 2.6E+02 0.0057 27.3 14.2 57 400-456 109-167 (360)
419 COG5159 RPN6 26S proteasome re 49.2 2.2E+02 0.0048 26.4 10.1 20 296-315 130-149 (421)
420 PF08424 NRDE-2: NRDE-2, neces 48.8 2.5E+02 0.0054 26.9 11.5 63 307-372 47-109 (321)
421 PF04910 Tcf25: Transcriptiona 48.7 2.7E+02 0.0058 27.2 16.8 53 335-388 112-165 (360)
422 PF11663 Toxin_YhaV: Toxin wit 48.2 25 0.00055 28.2 3.4 31 100-132 108-138 (140)
423 PF14689 SPOB_a: Sensor_kinase 48.2 37 0.0008 23.1 3.9 23 296-318 28-50 (62)
424 PF11768 DUF3312: Protein of u 48.0 2.7E+02 0.0057 28.6 11.1 55 265-319 413-472 (545)
425 PRK10564 maltose regulon perip 47.8 33 0.00071 31.9 4.6 37 193-229 260-296 (303)
426 PF12862 Apc5: Anaphase-promot 47.7 72 0.0016 23.8 5.9 25 400-424 47-71 (94)
427 PRK10564 maltose regulon perip 47.4 41 0.00088 31.3 5.1 40 293-332 259-298 (303)
428 PF11663 Toxin_YhaV: Toxin wit 46.8 26 0.00057 28.1 3.3 33 200-234 105-137 (140)
429 PF10255 Paf67: RNA polymerase 46.5 71 0.0015 31.5 6.9 57 365-421 125-191 (404)
430 PRK13800 putative oxidoreducta 46.4 4.8E+02 0.01 29.4 26.5 255 180-456 625-880 (897)
431 PF14863 Alkyl_sulf_dimr: Alky 46.2 81 0.0018 25.8 6.2 63 378-443 57-119 (141)
432 PF11848 DUF3368: Domain of un 45.6 78 0.0017 20.1 5.3 33 302-334 13-45 (48)
433 KOG3824 Huntingtin interacting 43.9 35 0.00075 31.7 4.1 59 373-431 127-187 (472)
434 PF02228 Gag_p19: Major core p 43.3 1.2E+02 0.0025 21.5 5.6 73 6-79 6-87 (92)
435 KOG4567 GTPase-activating prot 43.2 2.9E+02 0.0063 26.0 10.3 73 311-389 263-345 (370)
436 PF12968 DUF3856: Domain of Un 42.8 66 0.0014 25.3 4.8 59 396-454 57-126 (144)
437 KOG0292 Vesicle coat complex C 42.1 47 0.001 35.6 5.2 97 304-424 606-702 (1202)
438 COG5108 RPO41 Mitochondrial DN 42.0 1.2E+02 0.0027 31.6 7.8 47 296-342 33-81 (1117)
439 KOG4814 Uncharacterized conser 41.8 2.9E+02 0.0063 28.9 10.3 84 373-456 365-456 (872)
440 PF14561 TPR_20: Tetratricopep 41.6 1.4E+02 0.0031 22.1 8.2 53 393-445 21-75 (90)
441 KOG4567 GTPase-activating prot 41.5 2.9E+02 0.0062 26.1 9.3 72 143-215 262-343 (370)
442 PRK10941 hypothetical protein; 40.6 3E+02 0.0066 25.5 10.5 78 294-373 184-262 (269)
443 KOG0686 COP9 signalosome, subu 40.6 3.7E+02 0.008 26.5 13.7 59 160-218 151-215 (466)
444 PF09454 Vps23_core: Vps23 cor 40.4 96 0.0021 21.4 4.9 50 119-171 5-54 (65)
445 PF13934 ELYS: Nuclear pore co 39.8 2.8E+02 0.0061 24.9 13.1 12 339-350 121-132 (226)
446 PF09670 Cas_Cas02710: CRISPR- 39.7 3.8E+02 0.0083 26.4 12.4 55 199-254 140-198 (379)
447 PF09477 Type_III_YscG: Bacter 39.7 1.8E+02 0.0038 22.5 9.1 79 240-321 21-99 (116)
448 COG0790 FOG: TPR repeat, SEL1 38.9 3.3E+02 0.0071 25.4 19.8 16 205-220 128-143 (292)
449 PF11848 DUF3368: Domain of un 38.6 1E+02 0.0023 19.6 5.1 30 202-231 14-43 (48)
450 KOG3636 Uncharacterized conser 38.5 4.1E+02 0.0089 26.4 14.2 195 38-236 39-271 (669)
451 KOG0551 Hsp90 co-chaperone CNS 38.5 1.5E+02 0.0032 28.2 7.2 89 364-452 83-177 (390)
452 PF04034 DUF367: Domain of unk 38.1 2.1E+02 0.0045 22.9 7.7 59 362-420 66-125 (127)
453 cd00280 TRFH Telomeric Repeat 38.1 2.5E+02 0.0054 24.3 7.8 23 165-187 117-139 (200)
454 COG4976 Predicted methyltransf 37.8 67 0.0014 28.7 4.7 57 335-393 4-61 (287)
455 PF07720 TPR_3: Tetratricopept 37.7 88 0.0019 18.5 4.4 17 400-416 7-23 (36)
456 cd08326 CARD_CASP9 Caspase act 37.0 1E+02 0.0022 22.6 4.9 62 38-106 19-80 (84)
457 KOG0292 Vesicle coat complex C 36.4 4.7E+02 0.01 28.8 11.1 132 268-423 651-782 (1202)
458 COG0790 FOG: TPR repeat, SEL1 36.1 3.6E+02 0.0078 25.1 19.1 78 380-460 173-269 (292)
459 COG5187 RPN7 26S proteasome re 35.5 3.8E+02 0.0081 25.1 10.0 93 360-454 113-218 (412)
460 PF14689 SPOB_a: Sensor_kinase 35.4 1.2E+02 0.0025 20.6 4.8 19 165-183 29-47 (62)
461 PF11838 ERAP1_C: ERAP1-like C 35.4 3.9E+02 0.0085 25.3 20.5 109 342-451 146-260 (324)
462 COG2178 Predicted RNA-binding 33.4 3.3E+02 0.0071 23.8 8.7 50 270-319 39-97 (204)
463 COG2912 Uncharacterized conser 32.6 1.4E+02 0.0029 27.6 6.0 60 398-457 185-244 (269)
464 PF07575 Nucleopor_Nup85: Nup8 32.6 58 0.0013 34.2 4.3 92 88-185 373-464 (566)
465 smart00638 LPD_N Lipoprotein N 32.4 6.1E+02 0.013 26.6 21.9 64 50-118 307-371 (574)
466 PF00244 14-3-3: 14-3-3 protei 32.2 3.9E+02 0.0084 24.2 9.1 160 93-253 7-197 (236)
467 smart00777 Mad3_BUB1_I Mad3/BU 31.4 2.4E+02 0.0053 22.5 6.6 42 142-183 81-123 (125)
468 cd00280 TRFH Telomeric Repeat 31.4 2.8E+02 0.0061 23.9 7.2 18 371-388 120-137 (200)
469 PRK09857 putative transposase; 31.4 3E+02 0.0066 25.9 8.4 65 397-461 209-273 (292)
470 KOG2297 Predicted translation 31.1 4.6E+02 0.01 24.8 10.1 21 291-311 321-341 (412)
471 KOG0128 RNA-binding protein SA 30.9 7.4E+02 0.016 27.1 21.3 133 86-219 112-260 (881)
472 PF11817 Foie-gras_1: Foie gra 30.8 1.7E+02 0.0037 26.7 6.6 16 95-110 18-33 (247)
473 PRK14700 recombination factor 30.8 4.6E+02 0.01 24.7 9.8 28 49-81 63-90 (300)
474 COG5108 RPO41 Mitochondrial DN 30.4 2.8E+02 0.0061 29.2 8.2 74 127-202 33-115 (1117)
475 KOG2471 TPR repeat-containing 30.1 6E+02 0.013 25.8 16.8 45 396-441 338-382 (696)
476 cd08332 CARD_CASP2 Caspase act 29.9 1.3E+02 0.0029 22.3 4.7 60 37-103 22-81 (90)
477 COG0735 Fur Fe2+/Zn2+ uptake r 29.8 3.2E+02 0.0069 22.5 7.7 60 215-275 11-70 (145)
478 cd08326 CARD_CASP9 Caspase act 29.7 2.3E+02 0.0049 20.8 6.2 37 272-308 42-78 (84)
479 PRK13184 pknD serine/threonine 29.6 8.6E+02 0.019 27.4 21.2 283 167-456 483-832 (932)
480 PF08311 Mad3_BUB1_I: Mad3/BUB 29.6 2.9E+02 0.0063 22.0 8.5 42 243-284 81-123 (126)
481 PF13929 mRNA_stabil: mRNA sta 29.6 4.8E+02 0.01 24.5 18.9 114 275-388 143-264 (292)
482 PF12069 DUF3549: Protein of u 29.1 5.3E+02 0.011 24.8 12.4 133 165-299 172-306 (340)
483 PF11768 DUF3312: Protein of u 29.0 3.3E+02 0.0071 28.0 8.4 57 366-422 412-472 (545)
484 PF07064 RIC1: RIC1; InterPro 28.9 4.7E+02 0.01 24.1 14.0 154 294-458 85-250 (258)
485 COG5159 RPN6 26S proteasome re 28.9 4.9E+02 0.011 24.3 13.2 158 299-456 11-193 (421)
486 PF10255 Paf67: RNA polymerase 28.8 1.4E+02 0.0031 29.5 5.9 55 264-318 126-191 (404)
487 PF11817 Foie-gras_1: Foie gra 28.6 2.9E+02 0.0064 25.2 7.8 54 296-349 183-241 (247)
488 KOG2582 COP9 signalosome, subu 28.5 5.6E+02 0.012 24.9 15.7 108 89-203 142-271 (422)
489 PRK11639 zinc uptake transcrip 28.5 3E+02 0.0064 23.4 7.2 18 242-259 42-59 (169)
490 PF07575 Nucleopor_Nup85: Nup8 28.4 3.6E+02 0.0077 28.4 9.3 94 189-286 371-464 (566)
491 PF02847 MA3: MA3 domain; Int 28.1 1.6E+02 0.0034 22.8 5.2 21 93-113 8-28 (113)
492 PF06957 COPI_C: Coatomer (COP 27.9 2.6E+02 0.0055 27.9 7.4 47 395-455 301-347 (422)
493 smart00544 MA3 Domain in DAP-5 27.9 2.8E+02 0.0061 21.3 8.5 23 92-114 7-29 (113)
494 PF04823 Herpes_UL49_2: Herpes 27.8 77 0.0017 23.5 2.9 32 2-33 19-50 (96)
495 COG5191 Uncharacterized conser 27.7 1.2E+02 0.0027 28.3 4.9 80 358-437 103-185 (435)
496 KOG1498 26S proteasome regulat 26.8 6.2E+02 0.013 24.9 16.3 85 297-388 137-238 (439)
497 COG2256 MGS1 ATPase related to 26.6 6.4E+02 0.014 25.0 16.9 89 138-240 204-299 (436)
498 COG4259 Uncharacterized protei 26.5 2E+02 0.0044 21.8 4.9 43 411-453 54-97 (121)
499 PRK11639 zinc uptake transcrip 26.3 3.1E+02 0.0066 23.3 6.9 38 138-175 39-76 (169)
500 smart00638 LPD_N Lipoprotein N 26.1 7.8E+02 0.017 25.8 25.0 59 158-218 309-368 (574)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7e-90 Score=725.97 Aligned_cols=536 Identities=32% Similarity=0.610 Sum_probs=527.6
Q ss_pred CCCCHHHHHHHHHhccCCchH---HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHHHH
Q 036003 17 LCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM 93 (558)
Q Consensus 17 ~~p~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 93 (558)
..|+..+|++++.+|++.+.. ++++..|.+.|+.||..++|.|+.+|+++ |++++|.++|++|++||+.+||.+
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~---g~~~~A~~lf~~m~~~~~~t~n~l 195 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC---GMLIDARRLFDEMPERNLASWGTI 195 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC---CCHHHHHHHHhcCCCCCeeeHHHH
Confidence 468899999999999988877 89999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 036003 94 ARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173 (558)
Q Consensus 94 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 173 (558)
|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|+.. |..+.+.+++..+.+.|+.||..+|+.|+++|+++|
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~--~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL--GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC--CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 036003 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253 (558)
Q Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 253 (558)
++++|.++|++|.++|+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+
T Consensus 274 ~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 274 DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred CHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036003 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333 (558)
Q Consensus 254 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 333 (558)
.|++||..+|++|+++|+++|++++|.++|++|.++|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++
T Consensus 354 ~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 433 (697)
T PLN03081 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433 (697)
T ss_pred hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036003 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413 (558)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 413 (558)
.+|++.|.+++|.++|+.|.+.+++.|+..+|++++++|++.|++++|.+++++|+..|+..+|++|+.+|..+|+++.|
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a 513 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELG 513 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 99999999999999999999877999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEEECCEEEEEeeCCCCCCChHHHHHH
Q 036003 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKA 493 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (558)
..+++++.+.+|.+..+|..|+++|++.|+|++|.++++.|.++|+.+.|+++|+.+++.++.|+.++..||..+++++.
T Consensus 514 ~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~ 593 (697)
T PLN03081 514 RLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQK 593 (697)
T ss_pred HHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCcccCCCCcccCCCChHHHHHHhhhchHHHHHHHhhcCCCCCCcEEEeccccCC
Q 036003 494 LDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558 (558)
Q Consensus 494 ~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (558)
++++..+|++.|+.||+..+. .++++++++..+.+||||+|++|+++.+|++++|+|+||||||
T Consensus 594 l~~l~~~~~~~gy~~~~~~~~-~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c 657 (697)
T PLN03081 594 LDELMKEISEYGYVAEENELL-PDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRIC 657 (697)
T ss_pred HHHHHHHHHHcCCCCCcchhh-ccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEEC
Confidence 999999999999999999988 8999999999999999999999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.9e-87 Score=718.57 Aligned_cols=535 Identities=36% Similarity=0.661 Sum_probs=523.6
Q ss_pred CCCCCCHHHHHHHHHhccCCchH---HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHH
Q 036003 15 PKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFN 91 (558)
Q Consensus 15 ~~~~p~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 91 (558)
.+..||..+|++++.+|++.++. +++|..+.+.|+.||..+||.||.+|+++ |++++|.++|++|..||..+||
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~---g~~~~A~~vf~~m~~~d~~s~n 358 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL---GSWGEAEKVFSRMETKDAVSWT 358 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc---CCHHHHHHHHhhCCCCCeeeHH
Confidence 46789999999999999998887 99999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 036003 92 TMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE 171 (558)
Q Consensus 92 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 171 (558)
.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++. |++++|.++++.+.+.|+.|+..+||.|+++|++
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~--g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL--GDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc--chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 036003 172 CSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251 (558)
Q Consensus 172 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 251 (558)
+|++++|.++|++|.++|..+||++|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+
T Consensus 437 ~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~ 515 (857)
T PLN03077 437 CKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHV 515 (857)
T ss_pred cCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 59999999999999999999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 036003 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLG 331 (558)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 331 (558)
.+.|+.++..++++|+++|+++|++++|.++|+.+ .+|..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.
T Consensus 516 ~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred HHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 99999999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 036003 332 LLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411 (558)
Q Consensus 332 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 411 (558)
++.+|++.|++++|.++|+.|.+.+++.|+..+|++++++|++.|++++|.+++++|+.+||..+|++|+.+|..+|+.+
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e 674 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVE 674 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH
Confidence 99999999999999999999996679999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEEECCEEEEEeeCCCCCCChHHHH
Q 036003 412 LAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491 (558)
Q Consensus 412 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (558)
.++...+++++++|++...|..|.+.|+..|+|++|.++.+.|+++|+.++||++|+.+++.++.|..++..||..+++.
T Consensus 675 ~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~ 754 (857)
T PLN03077 675 LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEIN 754 (857)
T ss_pred HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcccCCCCcccCCCChHHHHHHhhhchHHHHHHHhhcCCCCCCcEEEeccccCC
Q 036003 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558 (558)
Q Consensus 492 ~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (558)
..++++.++|++.|+.||++.+. +.++++++..+.+||||+|++|+++++|+++||+|+||||||
T Consensus 755 ~~l~~l~~~~~~~g~~~~~~~~~--~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c 819 (857)
T PLN03077 755 TVLEGFYEKMKASGLAGSESSSM--DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMC 819 (857)
T ss_pred HHHHHHHHHHHhCCcCCCcchhc--cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeC
Confidence 99999999999999999998876 447788999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.6e-68 Score=571.75 Aligned_cols=475 Identities=24% Similarity=0.447 Sum_probs=449.0
Q ss_pred CCCCCCHHHHHHHHHhccCCchH---HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHH
Q 036003 15 PKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFN 91 (558)
Q Consensus 15 ~~~~p~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 91 (558)
.+..||..||++++++|+..+++ +++|..+.+.|+.|+..++|+||.+|+++ |++++|.++|++|++||..+||
T Consensus 181 ~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~---g~~~~A~~lf~~m~~~d~~s~n 257 (857)
T PLN03077 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC---GDVVSARLVFDRMPRRDCISWN 257 (857)
T ss_pred cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC---CCHHHHHHHHhcCCCCCcchhH
Confidence 37889999999999999988877 99999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 036003 92 TMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE 171 (558)
Q Consensus 92 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 171 (558)
++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+.. |+++.+.+++..+.+.|+.||..+||.|+.+|++
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~--g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k 335 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL--GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc--CChHHHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 036003 172 CSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251 (558)
Q Consensus 172 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 251 (558)
+|++++|.++|++|..+|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+
T Consensus 336 ~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~ 415 (857)
T PLN03077 336 LGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA 415 (857)
T ss_pred cCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 036003 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLG 331 (558)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 331 (558)
.+.|+.++..+|+.|+++|+++|++++|.++|++|.++|..+|+++|.+|++.|+.++|+.+|++|.. ++.||..||+.
T Consensus 416 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~ 494 (857)
T PLN03077 416 ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIA 494 (857)
T ss_pred HHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999986 59999999999
Q ss_pred HHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 036003 332 LLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411 (558)
Q Consensus 332 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 411 (558)
++.+|++.|+++.+.+++..+.+. |+.++..++++||++|+++|++++|.++|+++ .||..+|++++.+|+++|+.+
T Consensus 495 lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~ 571 (857)
T PLN03077 495 ALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGS 571 (857)
T ss_pred HHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHH
Confidence 999999999999999999999986 99999999999999999999999999999999 789999999999999999999
Q ss_pred HHHHHHHHHHccC-CCCcccHHhHHHHHHhcCChHHHHHHHHHHH-hCCCccCCcccEEEECCEEEEEeeCCCCCCChHH
Q 036003 412 LAKQVIERIFELD-DSHGGDYVILSNLCARAGRWEDVDYLRKLMK-DRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTD 489 (558)
Q Consensus 412 ~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (558)
+|.++|++|.+.+ .++..+|..++.+|.+.|++++|.++|+.|. +.|+.|+..++...++.+. ..|..++
T Consensus 572 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~--------r~G~~~e 643 (857)
T PLN03077 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG--------RAGKLTE 643 (857)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH--------hCCCHHH
Confidence 9999999999887 6678999999999999999999999999998 7899998877766544322 3344444
Q ss_pred HHHHHHHHHHHHHHcCcccCCCCc
Q 036003 490 LQKALDELVKELKMVGYVPDTSLV 513 (558)
Q Consensus 490 ~~~~~~~l~~~m~~~g~~pd~~~~ 513 (558)
+.+ ++++| ++.||..+|
T Consensus 644 A~~----~~~~m---~~~pd~~~~ 660 (857)
T PLN03077 644 AYN----FINKM---PITPDPAVW 660 (857)
T ss_pred HHH----HHHHC---CCCCCHHHH
Confidence 443 45555 689997654
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.2e-63 Score=524.08 Aligned_cols=447 Identities=18% Similarity=0.260 Sum_probs=417.2
Q ss_pred CCHHHHHHHHHhccCCchH---HHHHHHHHHhCC-CCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHHHHH
Q 036003 19 TNTPNALSLLPRCTSFRGL---KQIHAVTIKTHL-QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMA 94 (558)
Q Consensus 19 p~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~-~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li 94 (558)
++...|..++..+.+.+.+ .++++.|.+.|+ .++...++.++..|.+. |.+++|.++|+.|..||..+|+.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~---g~~~eAl~lf~~M~~pd~~Tyn~LL 444 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ---RAVKEAFRFAKLIRNPTLSTFNMLM 444 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHC---CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4566777888777655555 899999999995 67788889999999999 9999999999999999999999999
Q ss_pred HHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 036003 95 RGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174 (558)
Q Consensus 95 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 174 (558)
.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++. |++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~--G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS--GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC--cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccCC----CCcchHHHHHHHHHHCCCccHHHHHHHHHHH--CCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 036003 175 VEAARRIFENISE----PCVVSYNAIITAYARSSRPNEALSLFRELQE--RNLKPTDVTMLSALSSCALLGSLDLGKWIH 248 (558)
Q Consensus 175 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 248 (558)
+++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999964 9999999999999999999999999999986 679999999999999999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC----CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC
Q 036003 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS----GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324 (558)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 324 (558)
+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999997 4599999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHH
Q 036003 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL---PIKSTPILWRTLL 401 (558)
Q Consensus 325 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~ 401 (558)
|..+|+.||.+|++.|++++|.++|++|.+. ++.||..+|+.||.+|++.|++++|.++|++| +..||..+|++++
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9999999999999999999999999999985 99999999999999999999999999999998 6789999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHccC-CCCcccHHhHHHHHHh----cC-------------------ChHHHHHHHHHHHhC
Q 036003 402 SSCSSHNNLGLAKQVIERIFELD-DSHGGDYVILSNLCAR----AG-------------------RWEDVDYLRKLMKDR 457 (558)
Q Consensus 402 ~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~----~g-------------------~~~~A~~~~~~m~~~ 457 (558)
.+|++.|++++|.+++++|.+.+ .++..+|+.++..|.+ ++ ..++|..+|++|.+.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 99999999999999999999988 5667889998876432 21 136799999999999
Q ss_pred CCccCCcccEEEEC
Q 036003 458 GVLKVPGCSSIEVN 471 (558)
Q Consensus 458 g~~~~~~~~~~~~~ 471 (558)
|+.|+..++...+.
T Consensus 842 Gi~Pd~~T~~~vL~ 855 (1060)
T PLN03218 842 GTLPTMEVLSQVLG 855 (1060)
T ss_pred CCCCCHHHHHHHHH
Confidence 99999776655543
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.6e-62 Score=514.46 Aligned_cols=438 Identities=17% Similarity=0.250 Sum_probs=412.8
Q ss_pred CCHHHHHHHHHhccCCchH---HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCC----CCCcccHH
Q 036003 19 TNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP----EPDIVLFN 91 (558)
Q Consensus 19 p~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~ 91 (558)
|+..+|+.++++|++.+++ ..+++.|.+.|+.||..+|+.||.+|+++ |++++|.++|++|. .||..+|+
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~---G~vd~A~~vf~eM~~~Gv~PdvvTyn 511 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS---GKVDAMFEVFHEMVNAGVEANVHTFG 511 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC---cCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 8999999999999999988 89999999999999999999999999999 99999999999998 48999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHH
Q 036003 92 TMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK--LGLNSNLYVCTTLINLY 169 (558)
Q Consensus 92 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~ll~~~ 169 (558)
.||.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++. |++++|.++|++|.+ .|+.||..+|+.|+.+|
T Consensus 512 aLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~--G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS--GAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 999999999999987 57899999999999999
Q ss_pred HhCCChHHHHHHHhccCC----CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 036003 170 AECSDVEAARRIFENISE----PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245 (558)
Q Consensus 170 ~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 245 (558)
++.|++++|.++|+.|.+ |+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.
T Consensus 590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999986 6789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC----CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCC
Q 036003 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS----GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321 (558)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 321 (558)
+++++|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|. .||..+||.||.+|++.|++++|+++|++|.+.|
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999995 5799999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHh----hc-------------------CCH
Q 036003 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG----RA-------------------GRL 378 (558)
Q Consensus 322 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~-------------------g~~ 378 (558)
+.||..||+.++.+|++.|++++|.++|++|.+. |+.||..+|++|+.++. ++ +..
T Consensus 750 i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~ 828 (1060)
T PLN03218 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT 828 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH
Confidence 9999999999999999999999999999999986 99999999999997643 22 224
Q ss_pred HHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CCCcccHHhHHHHHHhcCChHHHHHHHHHH
Q 036003 379 DEAYRFIDEL---PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD-DSHGGDYVILSNLCARAGRWEDVDYLRKLM 454 (558)
Q Consensus 379 ~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (558)
++|..+|++| ++.||..||+.++.+++..+..+.+..+++.+...+ +++..+|++|++++.+. .++|..++++|
T Consensus 829 ~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 829 SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 6799999999 788999999999988888899999999998876554 77788999999998432 36899999999
Q ss_pred HhCCCccCCc
Q 036003 455 KDRGVLKVPG 464 (558)
Q Consensus 455 ~~~g~~~~~~ 464 (558)
...|+.|+..
T Consensus 907 ~~~Gi~p~~~ 916 (1060)
T PLN03218 907 ASLGVVPSVS 916 (1060)
T ss_pred HHcCCCCCcc
Confidence 9999999875
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.8e-57 Score=478.28 Aligned_cols=410 Identities=23% Similarity=0.353 Sum_probs=383.9
Q ss_pred CCCcccHHHHHHHHhcCCCchHHHHHHHHhHHCC-CCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHH
Q 036003 84 EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSG-LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVC 162 (558)
Q Consensus 84 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 162 (558)
+++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++. ++++.+.+++..|.+.|+.||..+|
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~--~~~~~a~~l~~~m~~~g~~~~~~~~ 161 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIAL--KSIRCVKAVYWHVESSGFEPDQYMM 161 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhCCCcchHHH
Confidence 3577899999999999999999999999998764 789999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 036003 163 TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242 (558)
Q Consensus 163 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 242 (558)
|.|+.+|+++|++++|.++|++|.+||..+||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|++.|+.+
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCC
Q 036003 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322 (558)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 322 (558)
.+.+++..+.+.|+.+|..+|++|+++|+++|++++|.++|+.|.++|+.+||.+|.+|++.|++++|+++|++|.+.|+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036003 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402 (558)
Q Consensus 323 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 402 (558)
.||..||+.++.+|++.|++++|.+++..|.+. |+.||..+|++||++|+++|++++|.++|++|. .||..+|++||.
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~ 399 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIA 399 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHH
Confidence 999999999999999999999999999999986 999999999999999999999999999999997 589999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHccC-CCCcccHHhHHHHHHhcCChHHHHHHHHHHHh-CCCccCCcccEEEECCEEEEEeeC
Q 036003 403 SCSSHNNLGLAKQVIERIFELD-DSHGGDYVILSNLCARAGRWEDVDYLRKLMKD-RGVLKVPGCSSIEVNNVVREFFSG 480 (558)
Q Consensus 403 ~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~~~~~~~~~~~~~ 480 (558)
+|+++|+.++|.++|++|.+.+ .++..+|..++.+|++.|+.++|.++|+.|.+ .|+.|+..++...++.+
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l------- 472 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL------- 472 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH-------
Confidence 9999999999999999999887 66789999999999999999999999999975 69999877766544432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHcCcccCCCC
Q 036003 481 DGVHSYSTDLQKALDELVKELKMVGYVPDTSL 512 (558)
Q Consensus 481 ~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~ 512 (558)
...+..+++.+ + +.+.++.||..+
T Consensus 473 -~r~G~~~eA~~----~---~~~~~~~p~~~~ 496 (697)
T PLN03081 473 -GREGLLDEAYA----M---IRRAPFKPTVNM 496 (697)
T ss_pred -HhcCCHHHHHH----H---HHHCCCCCCHHH
Confidence 23455555544 3 345588888654
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=3.5e-26 Score=252.68 Aligned_cols=397 Identities=12% Similarity=0.065 Sum_probs=311.6
Q ss_pred CCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHH
Q 036003 50 QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFP 126 (558)
Q Consensus 50 ~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 126 (558)
+.+..++..+...|... |++++|.+.|+++.+ .+...+..+...+...|++++|.+.|+++.+.+. .+..++.
T Consensus 462 ~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 537 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGK---GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAIL 537 (899)
T ss_pred CCCcHHHHHHHHHHHhC---CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHH
Confidence 45566777777777777 788888887776543 3445566677777778888888888887776532 2556666
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHHC
Q 036003 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE---PCVVSYNAIITAYARS 203 (558)
Q Consensus 127 ~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 203 (558)
.+...+... |+.++|...++++.+.+ +.+...+..++..|.+.|++++|..+++.+.+ .+...|..+..+|.+.
T Consensus 538 ~l~~~~~~~--~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 538 ALAGLYLRT--GNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHHHHHc--CCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 777777776 78888888888877664 44566677778888888888888888887764 4556788888888888
Q ss_pred CCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 036003 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVF 283 (558)
Q Consensus 204 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 283 (558)
|++++|...|+++.+.. +.+...+..+..++.+.|++++|..+++++.+.. +.+...+..++..+...|++++|.+++
T Consensus 615 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888887653 3456677778888888888888888888887754 445677778888888888888888888
Q ss_pred hccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC
Q 036003 284 DNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP 360 (558)
Q Consensus 284 ~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 360 (558)
+.+.+. +...+..+...+...|++++|...|+++... .|+..++..+..++.+.|++++|.+.++.+.+ ..+.
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~ 768 (899)
T TIGR02917 693 KSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPN 768 (899)
T ss_pred HHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCC
Confidence 887643 5667788888888999999999999988885 35557777788888999999999999988886 4456
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHH
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 438 (558)
+...+..+...|...|++++|.++|+++ ..++++.+++.+...+...|+ .+|+..++++++..|.++..+..++.+|
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLL 847 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 7788888999999999999999999987 323467888889999999999 8899999999999999988999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCc
Q 036003 439 ARAGRWEDVDYLRKLMKDRGVL 460 (558)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~g~~ 460 (558)
...|++++|.++++++.+.+..
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCCC
Confidence 9999999999999999886643
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=7.7e-26 Score=249.97 Aligned_cols=423 Identities=11% Similarity=0.032 Sum_probs=362.0
Q ss_pred CHHHHHHHHHhccCCchH---HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHH
Q 036003 20 NTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTM 93 (558)
Q Consensus 20 ~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l 93 (558)
+...+..+...+...++. ...+..+.+.. +.+...+..+...+... |++++|.+.|+++.. .+..++..+
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQE---GNPDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 345566666666666665 55555554432 34566778888999999 999999999998754 466788999
Q ss_pred HHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 036003 94 ARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173 (558)
Q Consensus 94 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 173 (558)
...+.+.|++++|..+|+++.+.+ +.+...+..+...+... |++++|..+++.+.+.. +.+...|..+..+|.+.|
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGK--GQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHC--CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 999999999999999999998764 33566777888888888 99999999999998754 667889999999999999
Q ss_pred ChHHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 036003 174 DVEAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY 250 (558)
Q Consensus 174 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 250 (558)
++++|...|+++.+ .+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|..+++.
T Consensus 616 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999998865 456678899999999999999999999998763 45678899999999999999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHH
Q 036003 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG--KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT 328 (558)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 328 (558)
+.+.. +.+...+..+...+.+.|++++|.+.|+.+.. ++..++..++.++.+.|++++|...++++.+.. +.+...
T Consensus 695 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~ 772 (899)
T TIGR02917 695 LQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVL 772 (899)
T ss_pred HHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 98876 55677788899999999999999999998863 455778889999999999999999999999863 446788
Q ss_pred HHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 036003 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSS 406 (558)
Q Consensus 329 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 406 (558)
+..+...|...|++++|.++|+++.+ ..+.+...+..+...+...|+ .+|+.+++++ ...| ++.++..+...+..
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 88999999999999999999999987 345678899999999999999 8899999987 3333 56778889999999
Q ss_pred cCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 407 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
.|++++|.+.++++++.+|.++.++..++.+|.+.|++++|.+++++|.+
T Consensus 850 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999863
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=2.3e-21 Score=183.53 Aligned_cols=383 Identities=14% Similarity=0.132 Sum_probs=303.5
Q ss_pred HHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhc
Q 036003 59 LINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135 (558)
Q Consensus 59 li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 135 (558)
+-..+.+. .+++....--....+ .-..+|..+...+-..|+++.|+.+|+.+.+...+ ....|..+..++...
T Consensus 88 l~ai~~q~---~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~ 163 (966)
T KOG4626|consen 88 LSAIFFQG---SRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQ 163 (966)
T ss_pred ehhhhhcc---cchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhc
Confidence 33455555 555554333222222 34568888999999999999999999999885322 456777888888877
Q ss_pred CcccHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHhCCChHHHHHHHhccCC--CC-cchHHHHHHHHHHCCCccHHHH
Q 036003 136 GAEALEEGKQLHCFAIKLGLNSNLY-VCTTLINLYAECSDVEAARRIFENISE--PC-VVSYNAIITAYARSSRPNEALS 211 (558)
Q Consensus 136 ~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~ 211 (558)
|+.+.|.+.|.+.++. .|+.. ..+.+.......|++.+|...+.+..+ |. .+.|+.|...+..+|+...|++
T Consensus 164 --~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq 239 (966)
T KOG4626|consen 164 --GDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQ 239 (966)
T ss_pred --CCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHH
Confidence 8999999999888875 45544 334455666678999999888877765 43 4578889999999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-
Q 036003 212 LFRELQERNLKPT-DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK- 289 (558)
Q Consensus 212 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 289 (558)
.|++..+. .|+ ...|..|...|...+.++.|...+.+..... +....++..+...|-..|.+|.|+..|++..+.
T Consensus 240 ~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~ 316 (966)
T KOG4626|consen 240 HYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ 316 (966)
T ss_pred HHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC
Confidence 99988764 454 4578889999999999999999988887653 334666777888889999999999999987644
Q ss_pred --CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC-hhHH
Q 036003 290 --DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG-IKHY 365 (558)
Q Consensus 290 --~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~ 365 (558)
=..+|+.|..++...|+..+|...|.+... ..|+. ...+.|...+...|.+++|..+|....+ +.|. ...+
T Consensus 317 P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~ 391 (966)
T KOG4626|consen 317 PNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAH 391 (966)
T ss_pred CCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhh
Confidence 356799999999999999999999999887 45554 6788889999999999999999988874 3443 5678
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCC
Q 036003 366 GCMVDLLGRAGRLDEAYRFIDEL-PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443 (558)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 443 (558)
+.|...|-++|++++|+..+++. .++|+ ...++.+...|-..|+.+.|.+.+.+++..+|.-..++..|+.+|-.+|+
T Consensus 392 nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn 471 (966)
T KOG4626|consen 392 NNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN 471 (966)
T ss_pred hhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC
Confidence 88999999999999999999887 77776 46888899999999999999999999999999888899999999999999
Q ss_pred hHHHHHHHHHHHhC
Q 036003 444 WEDVDYLRKLMKDR 457 (558)
Q Consensus 444 ~~~A~~~~~~m~~~ 457 (558)
+.+|..-++...+.
T Consensus 472 i~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 472 IPEAIQSYRTALKL 485 (966)
T ss_pred cHHHHHHHHHHHcc
Confidence 99999999887764
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.4e-20 Score=178.33 Aligned_cols=387 Identities=18% Similarity=0.163 Sum_probs=329.1
Q ss_pred hhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC--C-CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHH
Q 036003 53 LNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE--P-DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129 (558)
Q Consensus 53 ~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 129 (558)
..+|..+.+++... |++++|..+++.+.+ | .+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+-+
T Consensus 116 ae~ysn~aN~~ker---g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~l 190 (966)
T KOG4626|consen 116 AEAYSNLANILKER---GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHh---chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcch
Confidence 46888899999999 999999999998876 3 467899999999999999999999999887 467766655555
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCC---cchHHHHHHHHHHCCCc
Q 036003 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC---VVSYNAIITAYARSSRP 206 (558)
Q Consensus 130 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~ 206 (558)
..+.+.. |++++|..-+.+.++.. +-=...|+.|...+-..|++..|+..|++...-| ..+|-.|...|-..+.+
T Consensus 191 gnLlka~-Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 191 GNLLKAE-GRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred hHHHHhh-cccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcc
Confidence 5444433 99999999999888753 2235678899999999999999999999998733 35788899999999999
Q ss_pred cHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 036003 207 NEALSLFRELQERNLKPT-DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285 (558)
Q Consensus 207 ~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 285 (558)
++|+..|.+.... .|+ ...+..+...|-..|.+|.|...+++..+.. +.-...|+.|..++-..|++.+|.+.|++
T Consensus 269 d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 269 DRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred hHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 9999999888764 454 5577778888999999999999999998864 23367899999999999999999999998
Q ss_pred cCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC
Q 036003 286 MSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG 361 (558)
Q Consensus 286 ~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 361 (558)
... ....+.+.|...|...|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|...|++.. .+.|+
T Consensus 346 aL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~ 420 (966)
T KOG4626|consen 346 ALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPT 420 (966)
T ss_pred HHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCch
Confidence 763 3677889999999999999999999999988 66664 678999999999999999999999998 56776
Q ss_pred -hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHH
Q 036003 362 -IKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438 (558)
Q Consensus 362 -~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 438 (558)
...|+.+...|-..|+.+.|.+.+.+. .+.|. ...++.|...|...|++.+|++.++.++++.|+-+.+|..++.++
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 678999999999999999999999987 66665 467889999999999999999999999999999999999999888
Q ss_pred HhcCChHHHHHHHHHH
Q 036003 439 ARAGRWEDVDYLRKLM 454 (558)
Q Consensus 439 ~~~g~~~~A~~~~~~m 454 (558)
.-..+|.+-.+-++++
T Consensus 501 q~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 501 QIVCDWTDYDKRMKKL 516 (966)
T ss_pred HHHhcccchHHHHHHH
Confidence 7777776654444444
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.8e-20 Score=185.97 Aligned_cols=290 Identities=11% Similarity=0.066 Sum_probs=178.9
Q ss_pred hCCChHHHHHHHhccCC--C-CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChHHH
Q 036003 171 ECSDVEAARRIFENISE--P-CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT---DVTMLSALSSCALLGSLDLG 244 (558)
Q Consensus 171 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a 244 (558)
..|++++|...|+++.+ | +..++..+...+.+.|++++|..+++.+...+..++ ...+..+...+.+.|++++|
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 33444444444444432 1 122344444444444444444444444443211111 12333444444444444444
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC--------HHhHHHHHHHHHHCCChHHHHHHHHH
Q 036003 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD--------TQAWSAMIVAYATHGQGHKSILMFEE 316 (558)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~~~~~~a~~~~~~ 316 (558)
..+|+++.+.. +.+..+++.++.++.+.|++++|.+.++.+.+.+ ...|..+...+.+.|++++|...|++
T Consensus 127 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 127 EELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44444444331 2233444445555555555555555554443211 11345566677778888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH
Q 036003 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTPI 395 (558)
Q Consensus 317 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~ 395 (558)
+.+.. +.+...+..+...+.+.|++++|.++|+++... .......++..++.+|.+.|++++|.+.++++ ...|+..
T Consensus 206 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~ 283 (389)
T PRK11788 206 ALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD 283 (389)
T ss_pred HHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence 87643 223456777778888888888888888888753 22222456778888889999999999988887 4467766
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHh---cCChHHHHHHHHHHHhCCCccCCc
Q 036003 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR---AGRWEDVDYLRKLMKDRGVLKVPG 464 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~ 464 (558)
.+..++..+.+.|++++|..+++++++..|++. .+..++..+.. .|+.+++..++++|.++++.|+|.
T Consensus 284 ~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 284 LLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 678888899999999999999999998888764 55556655553 458999999999999999988886
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=8.1e-19 Score=183.33 Aligned_cols=389 Identities=13% Similarity=0.045 Sum_probs=278.5
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHccCCC--CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCC-CcccHHHHHHHH
Q 036003 56 LTKLINFCTQNPTTSSMEHAHLLFDRIPE--PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP-DDYSFPSLLKAC 132 (558)
Q Consensus 56 ~~~li~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~ 132 (558)
+......|.+. |++++|.+.|++... |+...|..+..+|.+.|++++|+..++...+. .| +...|..+-.++
T Consensus 130 ~k~~G~~~~~~---~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 130 LKEKGNKAYRN---KDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 33455567777 888888888887654 66677778888888888888888888887764 33 344666677777
Q ss_pred HhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC-------------------------
Q 036003 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE------------------------- 187 (558)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~------------------------- 187 (558)
... |++++|...|..+...+-..+.. ...++..+........+...++.-..
T Consensus 205 ~~l--g~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 205 DGL--GKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred HHc--CCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence 777 88888877776554432111111 11111111110011112222111110
Q ss_pred ----CCc---chHHHHHHHH---HHCCCccHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 036003 188 ----PCV---VSYNAIITAY---ARSSRPNEALSLFRELQERN-LKP-TDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255 (558)
Q Consensus 188 ----~~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 255 (558)
.+. ..+..+...+ ...+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...+++..+..
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 000 0111111111 12367899999999988764 234 34567778888889999999999999998864
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHH
Q 036003 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLG 331 (558)
Q Consensus 256 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ 331 (558)
+.+...|..+..++...|++++|...|+...+ .+...|..+...+...|++++|+..|++..+. .| +...+..
T Consensus 362 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~ 438 (615)
T TIGR00990 362 -PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQ 438 (615)
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHH
Confidence 33456778889999999999999999998753 36788999999999999999999999999985 44 4567778
Q ss_pred HHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH--------HHHHHHHH
Q 036003 332 LLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTP--------ILWRTLLS 402 (558)
Q Consensus 332 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~--------~~~~~l~~ 402 (558)
+...+.+.|++++|...|++... ..+.+...+..+...+...|++++|++.|++. ...|+. ..++..+.
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 88899999999999999999986 34556788999999999999999999999986 333321 11222233
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 403 SCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 403 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
.+...|++++|.++++++++++|.+..++..++.+|.+.|++++|.+.|++..+.
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445799999999999999999999889999999999999999999999998764
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=5.4e-18 Score=188.70 Aligned_cols=259 Identities=10% Similarity=-0.006 Sum_probs=194.0
Q ss_pred HHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036003 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274 (558)
Q Consensus 195 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 274 (558)
.+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCC
Confidence 34455667788888888888877652 2245566677778888888888888888877654 233444444555567778
Q ss_pred CHHHHHHHHhccCCC----CH---------HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 036003 275 RLDDAVSVFDNMSGK----DT---------QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341 (558)
Q Consensus 275 ~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 341 (558)
+.++|...++.+... +. ..+..+...+...|+.++|..+++. .+.+...+..+...+.+.|+
T Consensus 544 ~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~ 618 (1157)
T PRK11447 544 RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGD 618 (1157)
T ss_pred CHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCC
Confidence 888888888877532 11 1123445677888999999988872 23455667788889999999
Q ss_pred hHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036003 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIER 419 (558)
Q Consensus 342 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 419 (558)
+++|...|+++.+ .-+.+...+..++..|...|++++|++.++.. ...| +...+..+..++...|++++|.+++++
T Consensus 619 ~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 619 YAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999987 33456788999999999999999999999987 3344 456677788899999999999999999
Q ss_pred HHccCCCCc------ccHHhHHHHHHhcCChHHHHHHHHHHH-hCCCccC
Q 036003 420 IFELDDSHG------GDYVILSNLCARAGRWEDVDYLRKLMK-DRGVLKV 462 (558)
Q Consensus 420 ~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~~~ 462 (558)
+++..|+++ ..+..++..+...|++++|...|++.. ..|+.|.
T Consensus 697 al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 697 LIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred HhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 998775543 256667889999999999999998875 3455443
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=3.2e-18 Score=190.45 Aligned_cols=386 Identities=13% Similarity=0.097 Sum_probs=302.1
Q ss_pred HHHHhhcCCCCCCHHHHHHHHccCCC--C-CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCC-cccHHHH------
Q 036003 59 LINFCTQNPTTSSMEHAHLLFDRIPE--P-DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPD-DYSFPSL------ 128 (558)
Q Consensus 59 li~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l------ 128 (558)
....+... |++++|+..|++..+ | +...+..+...+.+.|++++|+..|++..+...... ...+..+
T Consensus 275 ~G~~~~~~---g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 275 QGLAAVDS---GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHC---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 34566777 999999999998754 3 667889999999999999999999999987532211 1112111
Q ss_pred ------HHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC--C-CcchHHHHHHH
Q 036003 129 ------LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE--P-CVVSYNAIITA 199 (558)
Q Consensus 129 ------l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~ 199 (558)
...+... |++++|...|+++++.. +.+...+..+..++...|++++|++.|+++.+ | +...+..+...
T Consensus 352 ~~~~~~g~~~~~~--g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l 428 (1157)
T PRK11447 352 WLLIQQGDAALKA--NNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 2344566 99999999999999875 45667788899999999999999999999875 3 34566667777
Q ss_pred HHHCCCccHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 036003 200 YARSSRPNEALSLFRELQERNLK--------PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271 (558)
Q Consensus 200 ~~~~g~~~~A~~~~~~m~~~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 271 (558)
|. .++.++|+.+++.+...... .....+..+...+...|++++|...+++..+.. +.+...+..+...|.
T Consensus 429 ~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 429 YR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLR 506 (1157)
T ss_pred HH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 64 46789999998776432100 011234556677888999999999999999875 335667777999999
Q ss_pred hcCCHHHHHHHHhccCC--C-CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHcc
Q 036003 272 KCGRLDDAVSVFDNMSG--K-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI---------TFLGLLYACSHT 339 (558)
Q Consensus 272 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---------~~~~ll~~~~~~ 339 (558)
+.|++++|...|+++.+ + +...+..+...+...++.++|+..++.+......++.. .+..+...+...
T Consensus 507 ~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 99999999999998753 2 56666666667788999999999998865433222221 223456678889
Q ss_pred CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 036003 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVI 417 (558)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 417 (558)
|+.++|.++++. .+.+...+..+...+.+.|++++|++.|++. ...| +...+..++..+...|++++|++.+
T Consensus 587 G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 587 GKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred CCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999872 2345667788999999999999999999988 3344 5788999999999999999999999
Q ss_pred HHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCC
Q 036003 418 ERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
+++.+..|+++..+..++.++...|++++|.++++++....
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 99999999998999999999999999999999999998654
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=2.7e-19 Score=177.60 Aligned_cols=282 Identities=15% Similarity=0.144 Sum_probs=196.9
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC-CC------cchHHHHHHHHHHCCCccHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE-PC------VVSYNAIITAYARSSRPNEAL 210 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~------~~~~~~li~~~~~~g~~~~A~ 210 (558)
|++++|...|+++.+.+ +.+..++..+...+.+.|++++|..+++.+.. ++ ...+..++..|.+.|++++|.
T Consensus 49 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~ 127 (389)
T PRK11788 49 EQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAE 127 (389)
T ss_pred CChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 55555666665555543 22344555555556666666666666555543 11 123555666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 036003 211 SLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY----VKVNTALIDMHAKCGRLDDAVSVFDNM 286 (558)
Q Consensus 211 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 286 (558)
.+|+++.+.. +.+..++..++..+.+.|++++|...++.+.+.+..+. ...+..+...+.+.|++++|...|+++
T Consensus 128 ~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 128 ELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred HHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 6666666542 33455666666666667777777777666665543221 123445667777888888888888876
Q ss_pred CCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChh
Q 036003 287 SGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK 363 (558)
Q Consensus 287 ~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 363 (558)
.+. +...+..+...+.+.|++++|.++|+++.+.+......++..++.+|...|++++|...++++.+. .|+..
T Consensus 207 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~ 283 (389)
T PRK11788 207 LAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGAD 283 (389)
T ss_pred HhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCch
Confidence 532 456777888899999999999999999987532222456788899999999999999999998853 46667
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHccC
Q 036003 364 HYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTPILWRTLLSSCSS---HNNLGLAKQVIERIFELD 424 (558)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~ 424 (558)
.+..++..+.+.|++++|..+++++ ...|+...++.++..+.. .|+.+++..+++++++..
T Consensus 284 ~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 284 LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 7788999999999999999999876 557898889888887764 568899999999888644
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=3.7e-18 Score=177.77 Aligned_cols=349 Identities=11% Similarity=0.010 Sum_probs=275.9
Q ss_pred CCHHHHHHHHccCCC------CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHH
Q 036003 70 SSMEHAHLLFDRIPE------PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143 (558)
Q Consensus 70 ~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a 143 (558)
.+++...-.|...++ .+..-...++..+.+.|++++|+.+++........+ ...+..+..+.... |++++|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~--g~~~~A 95 (656)
T PRK15174 19 EDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLAS--SQPDAV 95 (656)
T ss_pred hchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhc--CCHHHH
Confidence 566666666655543 233345566788889999999999999998864443 33444455555566 999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCC
Q 036003 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFRELQERN 220 (558)
Q Consensus 144 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 220 (558)
...++++.+.. +.+...+..+...+.+.|++++|...|++..+ .+...+..+...+...|++++|...++.+....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999999875 55677888899999999999999999999876 345678889999999999999999999887653
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHH
Q 036003 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAM 297 (558)
Q Consensus 221 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 297 (558)
. .+...+.. +..+...|++++|...++.+.+....++...+..+..++.+.|++++|+..|+..... +...+..+
T Consensus 175 P-~~~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 P-PRGDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred C-CCHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 2 23333333 3447889999999999999887654444555566678899999999999999987643 67788889
Q ss_pred HHHHHHCCChHH----HHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHH
Q 036003 298 IVAYATHGQGHK----SILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372 (558)
Q Consensus 298 i~~~~~~~~~~~----a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 372 (558)
...+...|++++ |...|++..+. .| +...+..+...+...|++++|...+++.... -+.+...+..+..+|
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l 328 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 999999999986 89999999884 45 4578888999999999999999999999863 334566778889999
Q ss_pred hhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 373 GRAGRLDEAYRFIDEL-PIKSTPIL-WRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 373 ~~~g~~~~A~~~~~~~-~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
.+.|++++|...|+++ ...|+... +..+..++...|+.++|...|+++++..|.+.
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999987 44565433 44457788999999999999999999998763
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=3.5e-17 Score=174.15 Aligned_cols=394 Identities=12% Similarity=0.045 Sum_probs=252.8
Q ss_pred ChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCC-cccHHH
Q 036003 52 DLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPD-DYSFPS 127 (558)
Q Consensus 52 ~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ 127 (558)
+.....-.+.+.... |+.++|++++.+... .+...+..+...+.+.|++++|+.+|++..+. .|+ ...+..
T Consensus 14 ~~~~~~d~~~ia~~~---g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~ 88 (765)
T PRK10049 14 SNNQIADWLQIALWA---GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRG 88 (765)
T ss_pred CHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 333444445555666 777777777777653 23334777777777778888888888777664 333 344555
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC--C-CcchHHHHHHHHHHCC
Q 036003 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE--P-CVVSYNAIITAYARSS 204 (558)
Q Consensus 128 ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g 204 (558)
+...+... |+.++|...++++++.. +.+.. +..+..++...|+.++|+..++++.+ | +...+..+...+...+
T Consensus 89 la~~l~~~--g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 89 LILTLADA--GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHHC--CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 55566666 77888888887777663 33445 66777777777888888877777765 3 3344555666677777
Q ss_pred CccHHHHHHHHHHHCCCCCCH------HHHHHHHHHHh-----ccCCh---HHHHHHHHHHHHh-CCCCchh-HH----H
Q 036003 205 RPNEALSLFRELQERNLKPTD------VTMLSALSSCA-----LLGSL---DLGKWIHEYIKKY-GLDKYVK-VN----T 264 (558)
Q Consensus 205 ~~~~A~~~~~~m~~~~~~p~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~ 264 (558)
..++|++.++.... .|+. .....++.... ..+++ ++|...++.+.+. ...|+.. .+ .
T Consensus 165 ~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 165 LSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred ChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 77777777765543 2221 01111222221 11223 5667777777654 1222211 11 1
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCC---H-HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHH
Q 036003 265 ALIDMHAKCGRLDDAVSVFDNMSGKD---T-QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP---DEITFLGLLYACS 337 (558)
Q Consensus 265 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~ 337 (558)
..+.++...|++++|+..|+.+.+.+ + ..-..+..+|...|++++|+..|+++.+..... .......+..++.
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 11234456688888888888876542 1 112224667888888888888888877643111 1234555666778
Q ss_pred ccCChHHHHHHHHHchhhcC----------CCCC---hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 036003 338 HTGLVDEGWNYFYSMRDKYG----------IVPG---IKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLS 402 (558)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~ 402 (558)
..|++++|.++++.+..... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..+..
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~ 401 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYAS 401 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 88888888888888775310 0122 234456677788888888888888886 2233 5677788888
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 403 SCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 403 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
.+...|++++|++.++++++..|++...+..++..+.+.|++++|..+++++.+.
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8888888888888888888888888888888888888888888888888888763
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=2.2e-17 Score=171.96 Aligned_cols=353 Identities=8% Similarity=-0.024 Sum_probs=277.3
Q ss_pred HhcCCCchHHHHHHHHhHHCC--CCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 036003 97 YSRSKTPIRAIFLFVELLNSG--LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174 (558)
Q Consensus 97 ~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 174 (558)
+.++.+|+.-.-.|....+.- -.-+..-...++..+... |+.++|..+++..+..... +......++.++...|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~ 91 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRK--DETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQ 91 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhc--CCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCC
Confidence 345666665555554443220 011233445566667777 9999999999999987543 44555556677778999
Q ss_pred hHHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 036003 175 VEAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251 (558)
Q Consensus 175 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 251 (558)
+++|...|+++.. .+...|..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...++.+
T Consensus 92 ~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 92 PDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 9999999999976 345678888999999999999999999998752 335667888899999999999999999988
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC----CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHH
Q 036003 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK----DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327 (558)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 327 (558)
......+ ...+..+ ..+...|++++|...++.+.+. +...+..+..++.+.|++++|+..++++.+.. +.+..
T Consensus 171 ~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~ 247 (656)
T PRK15174 171 AQEVPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAA 247 (656)
T ss_pred HHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHH
Confidence 7765333 3333333 3478899999999999987643 23344556778899999999999999999854 22467
Q ss_pred HHHHHHHHHHccCChHH----HHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 036003 328 TFLGLLYACSHTGLVDE----GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLL 401 (558)
Q Consensus 328 ~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~ 401 (558)
.+..+...+...|++++ |...|+++.. -.+.+...+..+...+.+.|++++|...+++. ...| +...+..+.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 77788899999999986 8999999986 33446778999999999999999999999987 3345 456778889
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCC
Q 036003 402 SSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 402 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
.++...|++++|...++++.+.+|.+...+..++.++...|++++|.+.|++..+..
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999887667777889999999999999999987653
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=5.5e-16 Score=165.12 Aligned_cols=398 Identities=8% Similarity=-0.044 Sum_probs=299.3
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHH
Q 036003 21 TPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGY 97 (558)
Q Consensus 21 ~~~~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~ 97 (558)
...|..+....++......++...... -+.+...+..+..++.+. |++++|..+|++..+ .+...+..+...+
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNL---KQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 455777777777766667777666552 244555788999999999 999999999999543 3566778888999
Q ss_pred hcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHH
Q 036003 98 SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEA 177 (558)
Q Consensus 98 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 177 (558)
...|++++|+..+++..+. .|+...+..+..++... |+.++|...++++.+.. +.+...+..+..++.+.|..+.
T Consensus 94 ~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~--g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRA--GRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHH
Confidence 9999999999999999876 34333377777777777 99999999999999975 4456666778888999999999
Q ss_pred HHHHHhccCC-CCc------chHHHHHHHHHH-----CCCc---cHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHh
Q 036003 178 ARRIFENISE-PCV------VSYNAIITAYAR-----SSRP---NEALSLFRELQER-NLKPTDV-TML----SALSSCA 236 (558)
Q Consensus 178 A~~~~~~~~~-~~~------~~~~~li~~~~~-----~g~~---~~A~~~~~~m~~~-~~~p~~~-~~~----~ll~~~~ 236 (558)
|.+.++.... |+. .....++..... .+++ ++|++.++.+.+. ...|+.. .+. ..+.++.
T Consensus 169 Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 169 ALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 9999998776 221 012222332221 2233 6788888888754 2233321 111 1134456
Q ss_pred ccCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-------HHhHHHHHHHHHHCCChH
Q 036003 237 LLGSLDLGKWIHEYIKKYGLD-KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD-------TQAWSAMIVAYATHGQGH 308 (558)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~ 308 (558)
..|++++|...|+.+.+.+.+ |+. ....+..+|...|++++|+.+|+++...+ ...+..+..++.+.|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 779999999999999887632 322 22225778999999999999999876432 234566777889999999
Q ss_pred HHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh
Q 036003 309 KSILMFEEMMKAQ-----------VSPDE---ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374 (558)
Q Consensus 309 ~a~~~~~~m~~~g-----------~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 374 (558)
+|..+++++.... -.|+. ..+..+...+...|++++|+++++++.. ..+.+...+..+...+..
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh
Confidence 9999999998752 12332 3455677788899999999999999986 456678889999999999
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCccc
Q 036003 375 AGRLDEAYRFIDEL-PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430 (558)
Q Consensus 375 ~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 430 (558)
.|++++|++.+++. ...|+ ...+..++..+...|++++|+.+++++++..|+++.+
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999997 44565 5677777788999999999999999999999998744
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=1.8e-16 Score=165.77 Aligned_cols=357 Identities=13% Similarity=0.004 Sum_probs=263.5
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 036003 90 FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLY 169 (558)
Q Consensus 90 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 169 (558)
+......+.+.|++++|+..|++..+ +.|+...|..+..++... |++++|...++..++.. +.+...+..+..+|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l--~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNAL--GDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHh--CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 44567788899999999999999887 467888888898899999 99999999999999865 44677888899999
Q ss_pred HhCCChHHHHHHHhccCCC---CcchHHHHHHHHHHCCCccHHHHHHHHHHHCC--------------------------
Q 036003 170 AECSDVEAARRIFENISEP---CVVSYNAIITAYARSSRPNEALSLFRELQERN-------------------------- 220 (558)
Q Consensus 170 ~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------------------- 220 (558)
...|++++|+..|...... +......++..+.. ..+........+..
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhh
Confidence 9999999999887655321 11111111111111 01111111111100
Q ss_pred -----CCCCH-HHHHHHHHH---HhccCChHHHHHHHHHHHHhC-C-CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC
Q 036003 221 -----LKPTD-VTMLSALSS---CALLGSLDLGKWIHEYIKKYG-L-DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK 289 (558)
Q Consensus 221 -----~~p~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 289 (558)
..++. ..+..+... ....+++++|...|+...+.+ . +.....++.+...+...|++++|+..|++..+.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 00000 000111100 123467899999999998765 2 334567888889999999999999999987643
Q ss_pred ---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHH
Q 036003 290 ---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG 366 (558)
Q Consensus 290 ---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 366 (558)
+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++... ..+.+...+.
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~ 437 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHI 437 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHH
Confidence 46678889999999999999999999998853 22467888899999999999999999999986 3344577788
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHh-------HHHH
Q 036003 367 CMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI-------LSNL 437 (558)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------l~~~ 437 (558)
.+...+.+.|++++|+..|++. ...| +...++.+...+...|++++|...|++++++.|.+...+.. .+..
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 8999999999999999999987 3344 57788999999999999999999999999998865443322 1223
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 036003 438 CARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 438 ~~~~g~~~~A~~~~~~m~~~g 458 (558)
+...|++++|.+++++....+
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcC
Confidence 445699999999999987653
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=1e-14 Score=152.53 Aligned_cols=391 Identities=12% Similarity=0.065 Sum_probs=241.1
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHHHH---HHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHh
Q 036003 58 KLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM---ARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134 (558)
Q Consensus 58 ~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 134 (558)
.++..+... |+.++|+..+++...|+...+..+ ...+...|++++|+++|+++.+.... +...+..++..+..
T Consensus 73 dll~l~~~~---G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~ 148 (822)
T PRK14574 73 DWLQIAGWA---GRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQAD 148 (822)
T ss_pred HHHHHHHHc---CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhh
Confidence 555555555 566666666655554433332222 23444456666666666665554221 23334444444444
Q ss_pred cCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC--C-CcchHHHHHHHHHHCCCccHHHH
Q 036003 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE--P-CVVSYNAIITAYARSSRPNEALS 211 (558)
Q Consensus 135 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~ 211 (558)
. ++.++|++.++.+... .|+...+..++..+...++..+|++.++++.+ | +...+..+..++.+.|-...|.+
T Consensus 149 ~--~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~ 224 (822)
T PRK14574 149 A--GRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALR 224 (822)
T ss_pred c--CCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 4 5555566555555543 33333333333333334444445555555543 2 33344555555555555555555
Q ss_pred HHHHHHHCCCCCCHHH------HHHHHHHH-----hccCCh---HHHHHHHHHHHHh-CC-CCchh----HHHHHHHHHH
Q 036003 212 LFRELQERNLKPTDVT------MLSALSSC-----ALLGSL---DLGKWIHEYIKKY-GL-DKYVK----VNTALIDMHA 271 (558)
Q Consensus 212 ~~~~m~~~~~~p~~~~------~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~~-~~~~~----~~~~l~~~~~ 271 (558)
+..+-... +.+...- ....++.- ....++ +.|..-++.+... +. ++... ...-.+-++.
T Consensus 225 l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 225 LAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 54432211 1111100 00111000 011122 2333333343331 11 22212 2223456778
Q ss_pred hcCCHHHHHHHHhccCCC----CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHccCCh
Q 036003 272 KCGRLDDAVSVFDNMSGK----DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ-----VSPDEITFLGLLYACSHTGLV 342 (558)
Q Consensus 272 ~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~g~~ 342 (558)
+.|+..++++.|+.+... ...+--.+..+|...+++++|+.+|+++.... ..++......|.-++...+++
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~ 383 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQL 383 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccH
Confidence 889999999999999844 34456778899999999999999999997643 122334457889999999999
Q ss_pred HHHHHHHHHchhhcC----------CCCC---hhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 036003 343 DEGWNYFYSMRDKYG----------IVPG---IKHYGCMVDLLGRAGRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSH 407 (558)
Q Consensus 343 ~~a~~~~~~~~~~~~----------~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~ 407 (558)
++|..+++.+.+... -.|+ ...+..++..+...|++.+|++.++++ ..+.|......+...+...
T Consensus 384 ~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~R 463 (822)
T PRK14574 384 DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLAR 463 (822)
T ss_pred HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 999999999987311 0122 234456678889999999999999998 3334788889999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 408 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
|.+.+|++.++.+..++|.+..+...++..+...|+|++|..+.+.+.+.
T Consensus 464 g~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 464 DLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred CCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999887654
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=8.8e-15 Score=156.18 Aligned_cols=225 Identities=9% Similarity=0.013 Sum_probs=131.2
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCHHhHHHHHHHH
Q 036003 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG--KDTQAWSAMIVAY 301 (558)
Q Consensus 224 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~ 301 (558)
+...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|+++.. ++...+..+..++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 34455555555544 56666666555555443 3333222334444566777777766665542 2333445555666
Q ss_pred HHCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 036003 302 ATHGQGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380 (558)
Q Consensus 302 ~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 380 (558)
.+.|++++|...+++..+.. |+. ..+..+.......|++++|...+++..+ ..|+...+..+...+.+.|++++
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHH
Confidence 66667777777766666543 322 2222233333445667777766666653 23456666666666667777777
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 381 AYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 381 A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
|+..+++. ...| +...++.+..++...|++++|+..++++++..|.++..+..++.+|...|++++|...+++..+
T Consensus 628 A~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 628 AVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 76666665 3333 3455566666666666777777777777666666666666677777777777776666666654
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=2.3e-14 Score=153.08 Aligned_cols=194 Identities=9% Similarity=0.025 Sum_probs=156.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHH--HHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036003 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM--IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336 (558)
Q Consensus 259 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 336 (558)
+...|..+..++.. |+.++|...|.+.....+..++.+ ...+...|++++|...|+++... .|+...+..+...+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 56777878888877 888899997777654333344444 44446899999999999998663 45555566777788
Q ss_pred HccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036003 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLAKQ 415 (558)
Q Consensus 337 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~ 415 (558)
.+.|++++|...++...+. . +.+...+..+.....+.|++++|...+++. ...|+...+..+..++.+.|++++|+.
T Consensus 553 l~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999863 2 333344444444555669999999999987 567788889999999999999999999
Q ss_pred HHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 416 VIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
.++++++.+|+++..+..++.++...|++++|...+++..+.
T Consensus 631 ~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 631 DLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988774
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=4.2e-14 Score=129.23 Aligned_cols=409 Identities=18% Similarity=0.209 Sum_probs=273.5
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHhc--cCCchHHHHHHHHHHhCCCCChhHHHHHHH---HhhcCCC----------
Q 036003 4 TPSPPITQSPPPKLCTNTPNALSLLPRC--TSFRGLKQIHAVTIKTHLQNDLNVLTKLIN---FCTQNPT---------- 68 (558)
Q Consensus 4 ~ps~~~~~~~~~~~~p~~~~~~~ll~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~li~---~~~~~~~---------- 68 (558)
+|.-|.-.|+.....-...+-+.+++-- +...+.--+++.|.+.|.+.+..+--.|.. .|....+
T Consensus 99 QP~l~~F~P~~l~~~~~V~~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~ 178 (625)
T KOG4422|consen 99 QPQLPVFRPRHLADPLQVETENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVG 178 (625)
T ss_pred CccccccCchhcCCchhhcchhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhh
Confidence 4444444433332222334555555432 333444778899999999888877666655 3333311
Q ss_pred -------------CCCHHHHHHHHccCCCCCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhc
Q 036003 69 -------------TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135 (558)
Q Consensus 69 -------------~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 135 (558)
.|++ |.-+|+.. .....+|..||.++++-...+.|.++|++......+.+..+||.+|.+..-.
T Consensus 179 ~~~~~E~S~~sWK~G~v--AdL~~E~~-PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~ 255 (625)
T KOG4422|consen 179 MRNFGEDSTSSWKSGAV--ADLLFETL-PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS 255 (625)
T ss_pred ccccccccccccccccH--HHHHHhhc-CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh
Confidence 1111 22223222 2466789999999999999999999999998888888999999999886544
Q ss_pred CcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHH----HHhccCC----CCcchHHHHHHHHHHCCCcc
Q 036003 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR----IFENISE----PCVVSYNAIITAYARSSRPN 207 (558)
Q Consensus 136 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~----~~~~~~~----~~~~~~~~li~~~~~~g~~~ 207 (558)
...+++.+|....+.||..|+|+++.+..+.|+++.|.. ++.+|++ |...+|..+|..+.+.+++.
T Consensus 256 ------~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~ 329 (625)
T KOG4422|consen 256 ------VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQ 329 (625)
T ss_pred ------ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCch
Confidence 338899999999999999999999999999998877654 4455543 88999999999999988876
Q ss_pred H-HHHHHHHHHHC----CC---CC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhC----CCCc---hhHHHHHHHHHH
Q 036003 208 E-ALSLFRELQER----NL---KP-TDVTMLSALSSCALLGSLDLGKWIHEYIKKYG----LDKY---VKVNTALIDMHA 271 (558)
Q Consensus 208 ~-A~~~~~~m~~~----~~---~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~ 271 (558)
+ |..++.+.... .. .| |...|...+..|.+..+.+.|.++...+.... +.++ ...|..+..+.|
T Consensus 330 k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~lic 409 (625)
T KOG4422|consen 330 KVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLIC 409 (625)
T ss_pred hhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHH
Confidence 5 44444444332 22 23 45678888999999999999998877665321 2333 345667788888
Q ss_pred hcCCHHHHHHHHhccCCC----CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-Ch----
Q 036003 272 KCGRLDDAVSVFDNMSGK----DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG-LV---- 342 (558)
Q Consensus 272 ~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~---- 342 (558)
.....+.-..+|+.|... +..+...++++..-.|+++-.-++|.+++..|-.-+.....-++..+++.. ..
T Consensus 410 q~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~ 489 (625)
T KOG4422|consen 410 QMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPE 489 (625)
T ss_pred HHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChH
Confidence 888889999999988753 667777888888888888888888888888764444433333333333332 10
Q ss_pred ----HH-----HHHHH-------HHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHH
Q 036003 343 ----DE-----GWNYF-------YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-------PIKSTPILWRT 399 (558)
Q Consensus 343 ----~~-----a~~~~-------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~ 399 (558)
.. |..++ .+++ .........+.+...+.+.|+.++|.++|.-+ +..|.....--
T Consensus 490 r~Ql~~~~ak~aad~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~E 566 (625)
T KOG4422|consen 490 REQLQVAFAKCAADIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAE 566 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHH
Confidence 00 11111 1111 22334456667777778888888888777655 22333333345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccC
Q 036003 400 LLSSCSSHNNLGLAKQVIERIFELD 424 (558)
Q Consensus 400 l~~~~~~~g~~~~a~~~~~~~~~~~ 424 (558)
++....+.++...|..+++-+...+
T Consensus 567 l~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 567 LMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 5566666777777777777776554
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=4.8e-13 Score=140.12 Aligned_cols=387 Identities=10% Similarity=0.023 Sum_probs=283.3
Q ss_pred CCchHHHHHHHHHHhCCCC-ChhHHHHH--HHHhhcCCCCCCHHHHHHHHccCCC--C-CcccHHHHHHHHhcCCCchHH
Q 036003 33 SFRGLKQIHAVTIKTHLQN-DLNVLTKL--INFCTQNPTTSSMEHAHLLFDRIPE--P-DIVLFNTMARGYSRSKTPIRA 106 (558)
Q Consensus 33 ~~~~~~~~~~~~~~~g~~~-~~~~~~~l--i~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A 106 (558)
..+...+......+.- .| +...+..+ ...|... |++++|.++|+++.+ | +...+..++..+...++.++|
T Consensus 80 ~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~---gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eA 155 (822)
T PRK14574 80 WAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNE---KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVV 155 (822)
T ss_pred HcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHH
Confidence 3344433333333333 33 33333333 5688888 999999999999876 3 456677788899999999999
Q ss_pred HHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccC
Q 036003 107 IFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS 186 (558)
Q Consensus 107 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 186 (558)
++.++++... .|+...+..++..+... ++..+|++.++++.+.. +.+...+..+...+.+.|-...|.++..+-+
T Consensus 156 l~~l~~l~~~--dp~~~~~l~layL~~~~--~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 156 LKQATELAER--DPTVQNYMTLSYLNRAT--DRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred HHHHHHhccc--CcchHHHHHHHHHHHhc--chHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 9999999875 56656664443333333 66666999999999985 5578888889999999999999999988765
Q ss_pred C-CCcchHH----HHHHHHHH---------CCC---ccHHHHHHHHHHHC-CCCCC-HHH----HHHHHHHHhccCChHH
Q 036003 187 E-PCVVSYN----AIITAYAR---------SSR---PNEALSLFRELQER-NLKPT-DVT----MLSALSSCALLGSLDL 243 (558)
Q Consensus 187 ~-~~~~~~~----~li~~~~~---------~g~---~~~A~~~~~~m~~~-~~~p~-~~~----~~~ll~~~~~~~~~~~ 243 (558)
. -+...+. ..+.-.++ ..+ .+.|+.-++.+... +-.|. ... ..-.+.++...|+..+
T Consensus 231 ~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~ 310 (822)
T PRK14574 231 NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTAD 310 (822)
T ss_pred cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 3 1111100 01111111 122 23455555555542 22232 222 2234567888999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---------CHHhHHHHHHHHHHCCChHHHHHHH
Q 036003 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---------DTQAWSAMIVAYATHGQGHKSILMF 314 (558)
Q Consensus 244 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~ 314 (558)
+.+.++.+...+.+....+-..+.++|...++.++|+.+|+.+... +......|.-+|...+++++|..++
T Consensus 311 vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l 390 (822)
T PRK14574 311 LIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFA 390 (822)
T ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHH
Confidence 9999999999887766678888999999999999999999987532 2333577889999999999999999
Q ss_pred HHHHHCCC-----------CCCH---HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 036003 315 EEMMKAQV-----------SPDE---ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380 (558)
Q Consensus 315 ~~m~~~g~-----------~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 380 (558)
+++.+.-. .||. ..+..++..+...|++.+|++.++++.. .-+-|......+.+.+...|.+.+
T Consensus 391 ~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~ 468 (822)
T PRK14574 391 VNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRK 468 (822)
T ss_pred HHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHH
Confidence 99987311 2332 3344566778899999999999999986 566788999999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCccc
Q 036003 381 AYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430 (558)
Q Consensus 381 A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 430 (558)
|++.++.. ...| +..+....+.++...+++++|..+.+.+.+..|.++.+
T Consensus 469 A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 469 AEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 99999876 4455 45677788888999999999999999999999998744
No 26
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=1.7e-13 Score=126.16 Aligned_cols=202 Identities=12% Similarity=0.120 Sum_probs=163.0
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHH
Q 036003 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMF 314 (558)
Q Consensus 238 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~ 314 (558)
.|++++|...+++.....-.-....|| +.-.+-..|++++|++.|-++. ..++...-.+...|-...+..+|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 478888888888887665444444454 4445677888999988887764 346777777888888888999999988
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 036003 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST 393 (558)
Q Consensus 315 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~ 393 (558)
.+.... ++.|...++.|...|-+.|+-.+|.+++-.-.. -++-+..+..-|..-|....-+++|+.+|++. -+.|+
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 777653 444678888999999999999999988766543 45668888888999999999999999999998 67899
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCC
Q 036003 394 PILWRTLLSSC-SSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443 (558)
Q Consensus 394 ~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 443 (558)
..-|..++..| .+.|++.+|..+++.....-|.+...+..|++.+...|.
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999888665 568999999999999999999999999999999888774
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.8e-13 Score=137.41 Aligned_cols=397 Identities=14% Similarity=0.116 Sum_probs=268.6
Q ss_pred CCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCC------CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcc
Q 036003 50 QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP------DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDY 123 (558)
Q Consensus 50 ~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 123 (558)
.-++.+.+.|.+.|--. |+++.++.+...+... -..+|..+.++|-..|++++|...|.+..+. .||.+
T Consensus 267 ~~nP~~l~~LAn~fyfK---~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~ 341 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFK---KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNF 341 (1018)
T ss_pred CCCcHHHHHHHHHHhhc---ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCc
Confidence 45678889999988777 9999999988877542 2345788889999999999999999777654 45544
Q ss_pred cHH--HHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC----ChHHHHHHHhccCC---CCcchHH
Q 036003 124 SFP--SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS----DVEAARRIFENISE---PCVVSYN 194 (558)
Q Consensus 124 ~~~--~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g----~~~~A~~~~~~~~~---~~~~~~~ 194 (558)
++. -+...+... |+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+..+ .|...|-
T Consensus 342 ~l~~~GlgQm~i~~--~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l 418 (1018)
T KOG2002|consen 342 VLPLVGLGQMYIKR--GDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWL 418 (1018)
T ss_pred cccccchhHHHHHh--chHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHH
Confidence 443 455566777 99999999999998864 556777778888887775 45677777766665 3455566
Q ss_pred HHHHHHHHCCCccHHHHHHHHH----HHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh---CCCCch-------
Q 036003 195 AIITAYARSSRPNEALSLFREL----QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY---GLDKYV------- 260 (558)
Q Consensus 195 ~li~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------- 260 (558)
.+...+-... +..++.+|... ...+-.+.....|.+.......|+++.|...|...... ...++.
T Consensus 419 ~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt 497 (1018)
T KOG2002|consen 419 ELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLT 497 (1018)
T ss_pred HHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhH
Confidence 5555555443 33335555433 34444566677777777777777777777777776654 112222
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC-------------------------------------CCHHhHHHHHHHHHH
Q 036003 261 KVNTALIDMHAKCGRLDDAVSVFDNMSG-------------------------------------KDTQAWSAMIVAYAT 303 (558)
Q Consensus 261 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------------------------~~~~~~~~li~~~~~ 303 (558)
.-|| +..++-..++.+.|.+.|..+.+ .++..|+.+...|..
T Consensus 498 ~~YN-larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~ 576 (1018)
T KOG2002|consen 498 LKYN-LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLK 576 (1018)
T ss_pred HHHH-HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHh
Confidence 1233 34444444455555555554432 244455555555555
Q ss_pred CCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHc------------cCChHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 036003 304 HGQGHKSILMFEEMMKAQ-VSPDEITFLGLLYACSH------------TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370 (558)
Q Consensus 304 ~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 370 (558)
...+..|.+-|+...+.- ..+|..+...|.+.|.+ .+..++|+++|.++.. .-+.|...-+-+.-
T Consensus 577 k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgi 654 (1018)
T KOG2002|consen 577 KSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGI 654 (1018)
T ss_pred hhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhh
Confidence 555555555554444321 22455555555554432 2346778888888875 45567777788888
Q ss_pred HHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CCCcccHHhHHHHHHhcCChHH
Q 036003 371 LLGRAGRLDEAYRFIDELP--IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD--DSHGGDYVILSNLCARAGRWED 446 (558)
Q Consensus 371 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 446 (558)
.++..|++.+|..+|.+.. ......+|-.+.++|...|++..|++.|+..++.. .+++.....|+.++.+.|++.+
T Consensus 655 VLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 655 VLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred hhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence 8899999999999998872 22345688889999999999999999999987754 4556778889999999999999
Q ss_pred HHHHHHHHHhCC
Q 036003 447 VDYLRKLMKDRG 458 (558)
Q Consensus 447 A~~~~~~m~~~g 458 (558)
|.+.+.......
T Consensus 735 ak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 735 AKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHhC
Confidence 988887766543
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=1e-11 Score=113.93 Aligned_cols=397 Identities=12% Similarity=0.103 Sum_probs=275.2
Q ss_pred hhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCccc----HHH---HHHHHhcCCCchHHHHHHHHhHHCC--------
Q 036003 53 LNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVL----FNT---MARGYSRSKTPIRAIFLFVELLNSG-------- 117 (558)
Q Consensus 53 ~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~---li~~~~~~g~~~~A~~~~~~m~~~g-------- 117 (558)
+.+-|.|+.+-.. |.+.++.-+++.|.+.++.. --. |+..|-.+.-+-.-++.|-.|.+.|
T Consensus 116 V~~E~nL~kmIS~----~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK 191 (625)
T KOG4422|consen 116 VETENNLLKMISS----REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWK 191 (625)
T ss_pred hcchhHHHHHHhh----cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccc
Confidence 4577888887665 78999999999997633221 111 2222211221212223333332221
Q ss_pred -----------CCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccC
Q 036003 118 -----------LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS 186 (558)
Q Consensus 118 -----------~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 186 (558)
.+-...||.++|.++++. -..+.|.+++++......+.+..++|.+|.+-.-..+ .+++.+|.
T Consensus 192 ~G~vAdL~~E~~PKT~et~s~mI~Gl~K~--~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMi 265 (625)
T KOG4422|consen 192 SGAVADLLFETLPKTDETVSIMIAGLCKF--SSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMI 265 (625)
T ss_pred cccHHHHHHhhcCCCchhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHH
Confidence 223668999999999999 8999999999999888779999999999976544333 55566665
Q ss_pred ----CCCcchHHHHHHHHHHCCCccH----HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH-HHHHHHHHHHh---
Q 036003 187 ----EPCVVSYNAIITAYARSSRPNE----ALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL-GKWIHEYIKKY--- 254 (558)
Q Consensus 187 ----~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~--- 254 (558)
.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++..+...
T Consensus 266 sqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltG 345 (625)
T KOG4422|consen 266 SQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTG 345 (625)
T ss_pred HhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhcc
Confidence 3999999999999999998875 56788899999999999999999999999888755 44444444432
Q ss_pred -CC----CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----------CHHhHHHHHHHHHHCCChHHHHHHHHHHH
Q 036003 255 -GL----DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-----------DTQAWSAMIVAYATHGQGHKSILMFEEMM 318 (558)
Q Consensus 255 -~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 318 (558)
.+ +.+...|..-+..|.+..+.+-|.++-.-+... ...-|..+....|+....+.-+.+|+.|.
T Consensus 346 K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV 425 (625)
T KOG4422|consen 346 KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV 425 (625)
T ss_pred CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 234556667778888888988888877665532 12235667788888889999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcC-C--------HHH-----HHHH
Q 036003 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG-R--------LDE-----AYRF 384 (558)
Q Consensus 319 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~--------~~~-----A~~~ 384 (558)
-.-+-|+..+...++++....|.++-.-++|..+.. +|...+......+...+++.. + +.. |..+
T Consensus 426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~ 504 (625)
T KOG4422|consen 426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADI 504 (625)
T ss_pred cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 887889999999999999999999988888888876 354444444444444444433 1 111 1112
Q ss_pred HHh-------C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC---CCCcc--cHHhHHHHHHhcCChHHHHHHH
Q 036003 385 IDE-------L-PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD---DSHGG--DYVILSNLCARAGRWEDVDYLR 451 (558)
Q Consensus 385 ~~~-------~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~l~~~~~~~g~~~~A~~~~ 451 (558)
++. + ..+-.....+.+...+.+.|..++|-++|....+.+ |..+. +..-+.+.-.+.+....|...+
T Consensus 505 ~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~l 584 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVL 584 (625)
T ss_pred HHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 211 1 122344566777777889999999999999997654 33322 2234555556667788899999
Q ss_pred HHHHhCCCc
Q 036003 452 KLMKDRGVL 460 (558)
Q Consensus 452 ~~m~~~g~~ 460 (558)
+-|...+..
T Consensus 585 Q~a~~~n~~ 593 (625)
T KOG4422|consen 585 QLASAFNLP 593 (625)
T ss_pred HHHHHcCch
Confidence 988776554
No 29
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.63 E-value=9.6e-13 Score=132.31 Aligned_cols=406 Identities=12% Similarity=0.079 Sum_probs=248.4
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHH---hCC--CCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC--CC--cccHHH
Q 036003 22 PNALSLLPRCTSFRGLKQIHAVTIK---THL--QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE--PD--IVLFNT 92 (558)
Q Consensus 22 ~~~~~ll~~~~~~~~~~~~~~~~~~---~g~--~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~--~~--~~~~~~ 92 (558)
+..+.|-..+.--++-..+++.+.. .-. ..-...|-.+..+|-.. |++++|.+.|-.... +| +..+--
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~---Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ---GDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHccCCCCccccccc
Confidence 3444444444444444444443322 111 11123466677788888 999999988876654 33 334555
Q ss_pred HHHHHhcCCCchHHHHHHHHhHHCCCCCC-cccHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 036003 93 MARGYSRSKTPIRAIFLFVELLNSGLLPD-DYSFPSLLKACACVG--AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLY 169 (558)
Q Consensus 93 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 169 (558)
+.+.+.+.|+.+.+...|+...+. .|| ..+...|-..|+..+ ....+.|..++....+.. +.|...|-.+..+|
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLL 424 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHH
Confidence 778888889999988888888774 343 334444444444330 013455555555554432 33444554444444
Q ss_pred HhCCChHHHHHHHhccC--------CCCcchHHHHHHHHHHCCCccHHHHHHHHHHHC---CCC----------------
Q 036003 170 AECSDVEAARRIFENIS--------EPCVVSYNAIITAYARSSRPNEALSLFRELQER---NLK---------------- 222 (558)
Q Consensus 170 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~---------------- 222 (558)
-...-+.. +..|.... ..-....|.+...+...|++.+|...|...... ...
T Consensus 425 e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 33322211 22222211 133344555555555555555555555544332 111
Q ss_pred -----------------------CCH-HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 036003 223 -----------------------PTD-VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278 (558)
Q Consensus 223 -----------------------p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 278 (558)
|.- ..|..++......+...+|...+..+.... ..++..++.+.+.|.+...+..
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcc
Confidence 211 122222211122344555555555554432 3444555556667777777777
Q ss_pred HHHHHhccCC-----CCHHhHHHHHHHHHH------------CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 036003 279 AVSVFDNMSG-----KDTQAWSAMIVAYAT------------HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341 (558)
Q Consensus 279 A~~~~~~~~~-----~~~~~~~~li~~~~~------------~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 341 (558)
|.+-|+.+.+ +|..+.-+|...|.+ .+..++|+++|.+..+.. +-|...-+.+.-.++..|+
T Consensus 583 a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 583 AKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred cccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccC
Confidence 7775554432 255555556665543 345788999999988853 3367788888888999999
Q ss_pred hHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036003 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKSTPILWRTLLSSCSSHNNLGLAKQVI 417 (558)
Q Consensus 342 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 417 (558)
+..|..+|..+++. ......+|-.+..+|..+|++..|++.|+.. ..+.+..+...|..++.+.|++.+|.+.+
T Consensus 662 ~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 662 FSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred chHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999984 3345668889999999999999999999876 33457888999999999999999999999
Q ss_pred HHHHccCCCCcccHHhHHHHH
Q 036003 418 ERIFELDDSHGGDYVILSNLC 438 (558)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~~ 438 (558)
..+....|.++..-..++.+.
T Consensus 740 l~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 740 LKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred HHHHHhCCccchHHhHHHHHH
Confidence 999999999877655554443
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=9.9e-16 Score=144.00 Aligned_cols=256 Identities=15% Similarity=0.140 Sum_probs=111.2
Q ss_pred HHHHHHHCCCccHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036003 196 IITAYARSSRPNEALSLFRELQERNLKPTDVT-MLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274 (558)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 274 (558)
+...+.+.|++++|++++.+......+|+... +..+...+...++.+.|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 45566677777777777755443322343333 333444555677777888877777765432 45555666666 6778
Q ss_pred CHHHHHHHHhccCC--CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 036003 275 RLDDAVSVFDNMSG--KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDEITFLGLLYACSHTGLVDEGWNYFYS 351 (558)
Q Consensus 275 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 351 (558)
++++|.+++...-+ ++...+..++..+.+.++++++..+++++.... ...+...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888776543 356667788888889999999999999877543 345667788888889999999999999999
Q ss_pred chhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcc
Q 036003 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429 (558)
Q Consensus 352 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 429 (558)
..+. .+.|......++..+...|+.+++.+++... ....|+..|..+..++...|+.++|...|++..+..|.++.
T Consensus 172 al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 172 ALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 9863 3335778889999999999999988888776 11345567888999999999999999999999999999999
Q ss_pred cHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 430 DYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
....+++++...|+.++|.++.++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999987654
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.61 E-value=1.8e-12 Score=129.53 Aligned_cols=314 Identities=13% Similarity=0.109 Sum_probs=240.2
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccC---CCCcchHHHHHHHHHHCCCccHHHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS---EPCVVSYNAIITAYARSSRPNEALSLFR 214 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 214 (558)
|+.++|.+++.++++.. +-+...|-.|...|-..|+.+++...+-... ..|..-|..+.....+.|+++.|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 88999999999888875 5577788888899999999888877765443 3566778888888888899999999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH----HHHHHHHhcCCHHHHHHHHhccCCC-
Q 036003 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT----ALIDMHAKCGRLDDAVSVFDNMSGK- 289 (558)
Q Consensus 215 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~- 289 (558)
+.++.. +++...+---...|-+.|+...|...|.++.....+.+..-+. ..+..+...++-+.|.+.++.....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 888764 4555555566777888899999988888888775433333222 2455666777778888887776542
Q ss_pred ----CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCC---------------------------CCHHHHHHHHHHHHc
Q 036003 290 ----DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS---------------------------PDEITFLGLLYACSH 338 (558)
Q Consensus 290 ----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~---------------------------p~~~~~~~ll~~~~~ 338 (558)
+...++.++..|.+...++.|.....++...... ++... -.+.-++.+
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~ 389 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVH 389 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhc
Confidence 4556788888888888888888888777662222 22222 123334455
Q ss_pred cCChHHHHHHHHHchhhcCC--CCChhHHHHHHHHHhhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHH
Q 036003 339 TGLVDEGWNYFYSMRDKYGI--VPGIKHYGCMVDLLGRAGRLDEAYRFIDELP---IKSTPILWRTLLSSCSSHNNLGLA 413 (558)
Q Consensus 339 ~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a 413 (558)
....+....+....... .. .-+...|.-+.++|...|++.+|+.+|..+. ...+...|.-+..+|...|.+++|
T Consensus 390 L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 390 LKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred ccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 55555555555555554 53 3457889999999999999999999999982 223567999999999999999999
Q ss_pred HHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
.+.+++++...|.+..+-.+|...|.+.|+.++|.+.+..+.
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999876
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.61 E-value=4.4e-12 Score=124.81 Aligned_cols=245 Identities=12% Similarity=-0.034 Sum_probs=103.6
Q ss_pred HhCCChHHHHHHHhccCC--CCcchHH--HHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 036003 170 AECSDVEAARRIFENISE--PCVVSYN--AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245 (558)
Q Consensus 170 ~~~g~~~~A~~~~~~~~~--~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 245 (558)
.+.|+++.|...|.++.+ |+...+. .....+...|++++|.+.++++.+.. +-+...+..+...|.+.|++++|.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHH
Confidence 445555555555555443 2221111 12334445555555555555554432 223334444445555555555555
Q ss_pred HHHHHHHHhCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHH
Q 036003 246 WIHEYIKKYGLDKYV-------KVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFE 315 (558)
Q Consensus 246 ~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 315 (558)
.++..+.+.+..++. ..|..++.......+.+...++++.+.+ .++.....+..++...|+.++|.++++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~ 287 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIL 287 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555544322111 1111122222222233333344443321 234444444445555555555555554
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH
Q 036003 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTP 394 (558)
Q Consensus 316 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~ 394 (558)
+..+. .|+... .++.+....++.+++.+..+...+ ..+-|...+.++...+.+.|++++|.+.|+.. ...|+.
T Consensus 288 ~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 288 DGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred HHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 44442 222211 111222233444445444444443 22233334444444444555555555555444 334444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036003 395 ILWRTLLSSCSSHNNLGLAKQVIERIF 421 (558)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (558)
..+..+...+.+.|+.++|.+++++.+
T Consensus 362 ~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 362 YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444555555544444443
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.59 E-value=1.3e-10 Score=112.18 Aligned_cols=369 Identities=12% Similarity=0.050 Sum_probs=273.9
Q ss_pred ccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 036003 88 VLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLIN 167 (558)
Q Consensus 88 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 167 (558)
.+|+.-...|.+.+.++-|..+|...++. ..-+...|..+...--.. |..+....+|++++..- +-....|-....
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~h--gt~Esl~Allqkav~~~-pkae~lwlM~ak 592 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSH--GTRESLEALLQKAVEQC-PKAEILWLMYAK 592 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhc--CcHHHHHHHHHHHHHhC-CcchhHHHHHHH
Confidence 45666666777777777777777777663 222344454444433333 77888888888887752 444555666666
Q ss_pred HHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 036003 168 LYAECSDVEAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244 (558)
Q Consensus 168 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 244 (558)
.+...||+..|..++...-+ .+...|-+-+.....+.+++.|..+|.+.... .|+...|.--++.---.++.++|
T Consensus 593 e~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHH
Confidence 77777888888888877654 34556777777778888888888888877653 56666666555555667788888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCC
Q 036003 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321 (558)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 321 (558)
.+++++..+. ++.-...|-.+...+-+.++++.|.+.|..-.+. .+..|-.+...=-+.|..-+|..++++..-.+
T Consensus 671 ~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 671 LRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 8888877775 3444667777888888888888888888765543 45567777777777788888888888887764
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 036003 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401 (558)
Q Consensus 322 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 401 (558)
. -+...|...|+.-.+.|+.+.|..+..+..+ .++.+...|..-|.+..+.++-.+..+.+++.. .|+.+.-++.
T Consensus 750 P-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia 824 (913)
T KOG0495|consen 750 P-KNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIA 824 (913)
T ss_pred C-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHH
Confidence 3 3667888888888889999999888888886 667777888888888888888777777777764 4566667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEEE
Q 036003 402 SSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEV 470 (558)
Q Consensus 402 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~ 470 (558)
..+....+++.|...|.+++..+|++..+|.-+...+.+.|.-++-.+++.+... ..|.-|-.|..+
T Consensus 825 ~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~av 891 (913)
T KOG0495|consen 825 KLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHH
Confidence 8888899999999999999999999999999999999999999888899888765 345555555543
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.58 E-value=1.5e-11 Score=121.71 Aligned_cols=289 Identities=10% Similarity=-0.041 Sum_probs=163.1
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHhCCChHHHHHHHhccCC--CCcc--hHHHHHHHHHH
Q 036003 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNL-YVCTTLINLYAECSDVEAARRIFENISE--PCVV--SYNAIITAYAR 202 (558)
Q Consensus 128 ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~--~~~~li~~~~~ 202 (558)
+..+......|+++.|.+.+....+.. |+. ..+-....++.+.|+.+.|.+.|++..+ |+.. ..-+....+.+
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 344443333477888887777665543 332 2233445666777888888777777543 3332 23334666777
Q ss_pred CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH---H----hcCC
Q 036003 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH---A----KCGR 275 (558)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~g~ 275 (558)
.|+++.|.+.++.+.+.. +-+...+..+...+.+.|++++|.+++..+.+.+..........-..++ . ....
T Consensus 166 ~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 788888888888777763 3355566677777778888888888888777775433222211111111 1 1122
Q ss_pred HHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHH--H-HHHHHHHHccCChHHHHHHH
Q 036003 276 LDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT--F-LGLLYACSHTGLVDEGWNYF 349 (558)
Q Consensus 276 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~-~~ll~~~~~~g~~~~a~~~~ 349 (558)
.+...+.++...+ .+...+..+...+...|+.++|.+++++..+. .||... + ..........++.+.+.+.+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 2333444444432 26666667777777777777777777777764 233321 1 11111122345566666666
Q ss_pred HHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036003 350 YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE--L-PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421 (558)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (558)
+...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.+
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66554211112114455666666666666666666662 2 445666666666666666666666666666654
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.1e-11 Score=115.67 Aligned_cols=214 Identities=14% Similarity=0.147 Sum_probs=175.6
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHH
Q 036003 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSIL 312 (558)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 312 (558)
.-.|+.-.|..-|+..++....++. .|--+..+|....+-++.+..|+...+ .|+.+|..-.+.+.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3457888888888888887644433 366677889999999999999998764 377788888888888899999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 036003 313 MFEEMMKAQVSPD-EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI 390 (558)
Q Consensus 313 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 390 (558)
-|++.+. +.|+ ...|..+.-+..+.+++++++..|++..+ .++..+.+|+-....+..++++++|.+.|+.. ..
T Consensus 416 DF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 416 DFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999988 4554 46777777777889999999999999987 67778899999999999999999999999986 33
Q ss_pred CCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 391 KST---------PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 391 ~~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
.|+ +.+-..++..-. .+++..|.++++++++++|....+|..|+..-.+.|+.++|.++|++-.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333 223333333333 3899999999999999999999999999999999999999999998764
No 36
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.56 E-value=7.2e-11 Score=113.93 Aligned_cols=387 Identities=11% Similarity=0.068 Sum_probs=286.1
Q ss_pred HhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHh----HHCCCCCCcccHHHHHHHHHh
Q 036003 62 FCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVEL----LNSGLLPDDYSFPSLLKACAC 134 (558)
Q Consensus 62 ~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~~~~ 134 (558)
+|++. ..++.|.+++.+..+ .+...|.+-...=-.+|..+...+++.+- ...|+..+..-|..=...|-.
T Consensus 415 AlarL---etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 415 ALARL---ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHH---HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 44455 556666666665443 35556655555555667776666665543 345777777777766677776
Q ss_pred cCcccHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHH
Q 036003 135 VGAEALEEGKQLHCFAIKLGLNS--NLYVCTTLINLYAECSDVEAARRIFENISE---PCVVSYNAIITAYARSSRPNEA 209 (558)
Q Consensus 135 ~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 209 (558)
. |.+-.+..+....+..|+.. ...||+.-...|.+.+.++-|..+|....+ .+...|...+..--..|..+.-
T Consensus 492 a--gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 492 A--GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred c--CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHH
Confidence 6 77777777777777776543 345777777888888888888888888776 3455677776666677888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-
Q 036003 210 LSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG- 288 (558)
Q Consensus 210 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 288 (558)
..+|++.... ++-....|.....-+-..|+...|..++..+.+.. +.+...|-+-+...+....++.|..+|.+...
T Consensus 570 ~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 570 EALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 8888888775 33344455555566667799999999999988875 33677888888889999999999999988764
Q ss_pred -CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHH
Q 036003 289 -KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG 366 (558)
Q Consensus 289 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 366 (558)
+....|.--+..---.+..++|++++++..+ .-|+- ..|..+.+.+-+.++++.|...|..-.+ .++.....|-
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWl 723 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWL 723 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHH
Confidence 4666776666666777889999999998887 35554 5677788888889999999988877664 4555677888
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-----------------
Q 036003 367 CMVDLLGRAGRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH----------------- 427 (558)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------------- 427 (558)
.|...-.+.|++-+|..++++. +.+.+...|-..|..-.+.|+.+.|..+..++++.-|.+
T Consensus 724 lLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rk 803 (913)
T KOG0495|consen 724 LLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRK 803 (913)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccc
Confidence 8888888999999999999987 433467889999999999999999999998888765554
Q ss_pred -------------cccHHhHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036003 428 -------------GGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 428 -------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (558)
+.........+....+++.|.+-|.+.++.+.
T Consensus 804 Tks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 804 TKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 33444566667777788888888888776543
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=7.6e-12 Score=123.15 Aligned_cols=276 Identities=13% Similarity=0.059 Sum_probs=160.8
Q ss_pred CCCchHHHHHHHHhHHCCCCCCcccHHHHHHHH--HhcCcccHHHHHHHHHHHHHhCCCChHHHHH--HHHHHHHhCCCh
Q 036003 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC--ACVGAEALEEGKQLHCFAIKLGLNSNLYVCT--TLINLYAECSDV 175 (558)
Q Consensus 100 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~ll~~~~~~g~~ 175 (558)
.|++++|.+.+....+.+- + ...+.++.+. ... |+.+.+...+.++.+. .|+..... .....+...|++
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~-p~l~~llaA~aA~~~--g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~ 169 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--Q-PVVNYLLAAEAAQQR--GDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNEN 169 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--c-hHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCH
Confidence 4677777666655444311 1 1222222222 333 6777777777776653 33332222 234566667777
Q ss_pred HHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHhccCChHHHH
Q 036003 176 EAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV-------TMLSALSSCALLGSLDLGK 245 (558)
Q Consensus 176 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~ll~~~~~~~~~~~a~ 245 (558)
+.|...++++.+ .+...+..+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...
T Consensus 170 ~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 170 HAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 777777766654 234456666677777777777777777776665432221 2222233333333444445
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-
Q 036003 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP- 324 (558)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p- 324 (558)
++++.+.+. .+.+......+...+...|+.++|.+++++..+.....--.++.+....++.+++++..++..+. .|
T Consensus 250 ~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~ 326 (398)
T PRK10747 250 RWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGD 326 (398)
T ss_pred HHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhh--CCC
Confidence 555544332 23455566667777777777777777776665432222222334444557777777777777764 34
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 325 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
|...+..+...|.+.+++++|.+.|+...+ ..|+...+..+...+.+.|+.++|.+++++.
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344566677777777778888777777763 4577777777777777777777777777654
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=8.1e-11 Score=109.27 Aligned_cols=241 Identities=15% Similarity=0.158 Sum_probs=141.4
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC------CCcchHHHHHHHHHHCCCccHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE------PCVVSYNAIITAYARSSRPNEALS 211 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~ 211 (558)
...+++.+-.......|++-+...-+-...+.....|+++|+.+|+++.+ .|..+|+.++. .++.+.. +.
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~sk--Ls 316 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDKSK--LS 316 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhhHH--HH
Confidence 45555666666666666655555555555555566677777777777665 24445554442 2222211 11
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---
Q 036003 212 LFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG--- 288 (558)
Q Consensus 212 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 288 (558)
.+..-...--+--+.|.-.+.+-|+-.++.++|..+|++..+.+ +.....|+.+..-|....+...|.+-|+...+
T Consensus 317 ~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p 395 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP 395 (559)
T ss_pred HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc
Confidence 11111110011223355555666666667777777777776654 33455666666777777777777777766543
Q ss_pred CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHH
Q 036003 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367 (558)
Q Consensus 289 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 367 (558)
.|-..|--|.++|.-.+.+.-|+-.|++..+ ++| |...+..|..+|.+.+++++|...|..... .-..+...+..
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte~~~l~~ 471 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTEGSALVR 471 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccchHHHHH
Confidence 3556666777777777777777777777666 344 446666777777777777777777776665 22334466666
Q ss_pred HHHHHhhcCCHHHHHHHHHh
Q 036003 368 MVDLLGRAGRLDEAYRFIDE 387 (558)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~ 387 (558)
|.+.|.+.++..+|...|++
T Consensus 472 LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 77777777777777666654
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=5.4e-14 Score=132.20 Aligned_cols=258 Identities=19% Similarity=0.138 Sum_probs=86.6
Q ss_pred HHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 036003 92 TMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE 171 (558)
Q Consensus 92 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 171 (558)
.+...+.+.|++++|++++++.......|+...|-.++..++... ++.+.|...++++...+. -+...+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~-~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSL-GDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccc-cccccccccccc-cc
Confidence 345666677777777777755443322344444444333333322 777777777777776652 255556666666 57
Q ss_pred CCChHHHHHHHhccCC--CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCChHHHHHHH
Q 036003 172 CSDVEAARRIFENISE--PCVVSYNAIITAYARSSRPNEALSLFRELQERN-LKPTDVTMLSALSSCALLGSLDLGKWIH 248 (558)
Q Consensus 172 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 248 (558)
.+++++|.++++..-+ ++...+..++..+.+.++++++.++++...... .+.+...|..+...+.+.|+.++|...+
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777765533 455566667777777777777777777765432 2345566666777777777777777777
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC
Q 036003 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325 (558)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 325 (558)
++..+.. |.+..+.+.++..+...|+.+++.++++... ..|...|..+..+|...|+.++|+.+|++..+.. +.|
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 7777764 3345566667777777777777666655543 2355566677777777777777777777766632 225
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHchh
Q 036003 326 EITFLGLLYACSHTGLVDEGWNYFYSMRD 354 (558)
Q Consensus 326 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 354 (558)
......+..++...|+.++|.++.+++..
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 56666677777777777777777665543
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=6.6e-11 Score=109.85 Aligned_cols=325 Identities=12% Similarity=0.076 Sum_probs=235.0
Q ss_pred cHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCc-chHHHHHHHHHH
Q 036003 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV-VSYNAIITAYAR 202 (558)
Q Consensus 124 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~ 202 (558)
.|..-|.+......|....|...|...+..- +-.-..|..|... ..+.+.+..+.......+. ..---+..++..
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~l---it~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSEL---ITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHh---hchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 4444444433333378888888887776542 3343444444333 3444444444433332211 111223456666
Q ss_pred CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHH
Q 036003 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL--DKYVKVNTALIDMHAKCGRLDDAV 280 (558)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 280 (558)
..+.+++.+-.......|.+-+...-+....+.-...++|+|+.+|+++.+... --|..+|+.++-.--.+.++.---
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 678888888888888888766666656666666788899999999999998742 125667766653332222222111
Q ss_pred HHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCC
Q 036003 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359 (558)
Q Consensus 281 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 359 (558)
...-.+.+--+.|...+..-|+-.++.++|...|++..+. .|.. ..|+.+..-|....+...|.+.++...+ -.+
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p 395 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INP 395 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCc
Confidence 2222233335667777888888899999999999999984 4554 5677777789999999999999999986 455
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHH
Q 036003 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
.|-..|-.|.++|.-.+...-|+-+|++. ..+| |...|.+|..+|.+.++.++|++.|.+++..+..+...|..|+..
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakL 475 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKL 475 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 68889999999999999999999999998 4455 789999999999999999999999999999998888999999999
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 036003 438 CARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 438 ~~~~g~~~~A~~~~~~m~~ 456 (558)
|.+.++.++|...+++-.+
T Consensus 476 ye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 9999999999999988765
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=1.5e-12 Score=126.23 Aligned_cols=276 Identities=14% Similarity=0.045 Sum_probs=195.3
Q ss_pred ChHHHHHHHhccCC--CCc-chHHHHHHHHHHCCCccHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChHHHHHHH
Q 036003 174 DVEAARRIFENISE--PCV-VSYNAIITAYARSSRPNEALSLFRELQERN--LKPTDVTMLSALSSCALLGSLDLGKWIH 248 (558)
Q Consensus 174 ~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 248 (558)
+..+|...|.++++ +|. .....+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+--+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 45778888887654 333 344556778888888888888888887642 112556777666543221 122222
Q ss_pred H-HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC
Q 036003 249 E-YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324 (558)
Q Consensus 249 ~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 324 (558)
. .+.+. -+..+.+|.++.++|.-+++.+.|++.|++...- ...+|+.+..-+.....+|+|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 2 22222 2455778888888888888888888888887644 456778888888888888888888888765 334
Q ss_pred CH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 036003 325 DE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP-GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTL 400 (558)
Q Consensus 325 ~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l 400 (558)
.. ..|..|...|.+.++++.|+-.|+++.+ +.| +......+...+.+.|+.++|++++++. ...| |+..-.-.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 33 4566677778888888888888888874 444 4556666777788888888888888887 2233 44444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036003 401 LSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 401 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (558)
+..+...+++++|++.++++.+.-|++...|..++..|.+.|+.+.|..-|--+.+...
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 66677788888888888888888888888888888888888888888888777766443
No 42
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=1.9e-10 Score=105.24 Aligned_cols=285 Identities=13% Similarity=0.034 Sum_probs=174.2
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC----CCcchHHHHHHHHHHCC
Q 036003 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE----PCVVSYNAIITAYARSS 204 (558)
Q Consensus 129 l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g 204 (558)
..+..+..+|++.+|++...+..+.+-.| ...|..-..+--+.||.+.+-..+.+..+ ++...+-+........|
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 33444444477777777777766655332 33344445566667777777777776655 23334555566677777
Q ss_pred CccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch-------hHHHHHHHHHHhcCCHH
Q 036003 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV-------KVNTALIDMHAKCGRLD 277 (558)
Q Consensus 205 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~ 277 (558)
+++.|..-++++.+.+ +-..........+|.+.|++.....++..+.+.+.-.+. .+|+.+++-....+..+
T Consensus 168 d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 168 DYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred CchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 7777777777776653 334556666677777777777777777777776644332 34444554444444444
Q ss_pred HHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchh
Q 036003 278 DAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD 354 (558)
Q Consensus 278 ~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 354 (558)
.-...++..+. .++..-.+++.-+.+.|+.++|.++.++..+++..|+ -...-.+.+.++...-.+..+.-.+
T Consensus 247 gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 247 GLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred HHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHH
Confidence 44455555542 2555666666667777777777777777776665555 1222234555666665665555555
Q ss_pred hcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036003 355 KYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421 (558)
Q Consensus 355 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (558)
.++..| ..+.+|...|.+.+.+.+|.+.|+.. +..|+..+|+-+.+++.+.|+..+|.++.++.+
T Consensus 323 ~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 323 QHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 333333 56666777777777777777777655 556677777777777777777777777766665
No 43
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=6.8e-10 Score=103.43 Aligned_cols=400 Identities=13% Similarity=0.134 Sum_probs=294.1
Q ss_pred CChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHH
Q 036003 51 NDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPS 127 (558)
Q Consensus 51 ~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 127 (558)
.+...|-.....=... +++..|..+|++... .+...|-..+..=.++..+..|..+++.....=...|..-|.
T Consensus 71 ~~~~~WikYaqwEesq---~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK- 146 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQ---KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK- 146 (677)
T ss_pred HHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-
Confidence 4445555555555555 889999999999875 566778888888899999999999999988753333332222
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccC--CCCcchHHHHHHHHHHCCC
Q 036003 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS--EPCVVSYNAIITAYARSSR 205 (558)
Q Consensus 128 ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~ 205 (558)
-+..=-.. |++..|.++|+.-.+ ..|+...|++.|+.=.+-..++.|..++++.. .|++.+|--....-.+.|+
T Consensus 147 Y~ymEE~L--gNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 147 YIYMEEML--GNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHHHh--cccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCc
Confidence 22222234 999999999998876 58999999999999999999999999999976 4999999999999999999
Q ss_pred ccHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHH
Q 036003 206 PNEALSLFRELQERNLKPTDVTMLSALSSC----ALLGSLDLGKWIHEYIKKYGLDKY--VKVNTALIDMHAKCGRLDDA 279 (558)
Q Consensus 206 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A 279 (558)
...|..+|....+. -.|...-..+..++ .+...++.|.-+|+...++= +.+ ...|..+...--+-|+....
T Consensus 223 ~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gI 299 (677)
T KOG1915|consen 223 VALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGI 299 (677)
T ss_pred HHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhh
Confidence 99999999987664 22333333344444 45667888998998888763 322 44555555444455655444
Q ss_pred HHHH--------hccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH--H-----HHHHHHHHH---Hc
Q 036003 280 VSVF--------DNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE--I-----TFLGLLYAC---SH 338 (558)
Q Consensus 280 ~~~~--------~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~-----~~~~ll~~~---~~ 338 (558)
.+.. +.+.+. |-.+|--.+..--..|+.+...++|++.+.. ++|-. . .|.-+=-+| ..
T Consensus 300 Ed~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle 378 (677)
T KOG1915|consen 300 EDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELE 378 (677)
T ss_pred HHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 222222 5667777777777889999999999999875 55532 1 122221122 35
Q ss_pred cCChHHHHHHHHHchhhcCCCCChhHHHHHHHHH----hhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 036003 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL----GRAGRLDEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLA 413 (558)
Q Consensus 339 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a 413 (558)
..+.+.+.++|+...+ -++....|+.-+--+| .++.++..|.+++... +.-|...+|...|..-.+.++++..
T Consensus 379 ~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 379 AEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRC 456 (677)
T ss_pred hhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHH
Confidence 6789999999999885 4555556665544444 4788999999999876 7788889999999999999999999
Q ss_pred HHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCccCCc
Q 036003 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPG 464 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 464 (558)
..++++.++-+|.+..+|.-.+..-...|+++.|..+|+-.......-.|.
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpe 507 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPE 507 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHH
Confidence 999999999999999999988888889999999999999888765543343
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=6.3e-12 Score=121.89 Aligned_cols=280 Identities=15% Similarity=0.110 Sum_probs=223.0
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC------CCcchHHHHHHHHHHCCCccHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE------PCVVSYNAIITAYARSSRPNEALS 211 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~ 211 (558)
-+.++|...|..+... +.-+..+...+..+|...+++++|+++|+.+.+ .+...|.+.+.-+-+. -++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 4567888888885444 333447778889999999999999999999875 5677888877644332 1222
Q ss_pred HH-HHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC
Q 036003 212 LF-RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290 (558)
Q Consensus 212 ~~-~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 290 (558)
.+ +.+.+. -+-.+.+|-.+.++|.-.++.+.|.+.|++....+ +-...+|+.+..-+.....+|.|...|+.....|
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 22 233332 24567899999999999999999999999998864 3367889989999999999999999999998877
Q ss_pred HHhHHH---HHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHH
Q 036003 291 TQAWSA---MIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG 366 (558)
Q Consensus 291 ~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 366 (558)
+..||+ +...|.+.++++.|+-.|++..+ +.| +.+....+...+.+.|+.++|+++++++.. --+.|+..--
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~ 561 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKY 561 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHH
Confidence 766655 56789999999999999999998 555 457777888888999999999999999985 2233455545
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 367 CMVDLLGRAGRLDEAYRFIDEL-PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
.-+..+...+++++|+..++++ ...|+ ...+..+...|.+.|+.+.|+.-|--+.+++|.-.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 5667788899999999999999 44565 56788889999999999999999999999998743
No 45
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.50 E-value=1.6e-10 Score=115.92 Aligned_cols=313 Identities=11% Similarity=0.084 Sum_probs=208.4
Q ss_pred CCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHH
Q 036003 70 SSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQL 146 (558)
Q Consensus 70 ~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~ 146 (558)
|++++|.+++.++.. .+...|..|...|-..|+.++++..+-..-... +-|...|..+-.-..+. |++++|.-.
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~--~~i~qA~~c 229 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQL--GNINQARYC 229 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhc--ccHHHHHHH
Confidence 889999998888765 355678888888988998888888765544332 22556677777777777 889999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCc--------chHHHHHHHHHHCCCccHHHHHHHHHHH
Q 036003 147 HCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV--------VSYNAIITAYARSSRPNEALSLFRELQE 218 (558)
Q Consensus 147 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (558)
|.++++.. +++...+---...|-+.|+...|.+-|.++.+.+. ..--..+..+...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 98888875 45555555567788888998888888887765222 1122334556666767888888877655
Q ss_pred C-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC---------------------------CCCchhH-HHHHHHH
Q 036003 219 R-NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG---------------------------LDKYVKV-NTALIDM 269 (558)
Q Consensus 219 ~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~-~~~l~~~ 269 (558)
. +-..+...++.++..+.+...++.+........... +.++..+ ...+.-.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 2 223345567777777888888888877776665511 2233333 1111122
Q ss_pred HHhcCCHHHHHHHHhccC----CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 036003 270 HAKCGRLDDAVSVFDNMS----GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345 (558)
Q Consensus 270 ~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 345 (558)
..+.+...+++..|-... ..++..|.-+..+|.+.|++.+|+.+|..+......-+...|..+..+|...|.+++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 223334444433332222 1245567777788888888888888888887754444566777778888888888888
Q ss_pred HHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
.+.|+.+.. --+.+...--.|...+.+.|+.++|.+.+..+
T Consensus 469 ~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 469 IEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 888888775 33334555566777788888888888888776
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.49 E-value=3.3e-11 Score=119.38 Aligned_cols=292 Identities=15% Similarity=0.017 Sum_probs=195.4
Q ss_pred HHHHHHHHh--cCCCchHHHHHHHHhHHCCCCCCcccHHHH-HHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 036003 90 FNTMARGYS--RSKTPIRAIFLFVELLNSGLLPDDYSFPSL-LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI 166 (558)
Q Consensus 90 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 166 (558)
+..+.+++. ..|+++.|.+.+.+..+. .|+...+-.+ ..+.... |+.+.+.+.+.++.+....+...+.-...
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~--g~~~~A~~~l~~a~~~~p~~~l~~~~~~a 160 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQR--GDEARANQHLEEAAELAGNDNILVEIART 160 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence 333444443 468888998888877664 3443333222 3344445 88999999998887653222223444457
Q ss_pred HHHHhCCChHHHHHHHhccCC--C-CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHH---hccCC
Q 036003 167 NLYAECSDVEAARRIFENISE--P-CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSC---ALLGS 240 (558)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~ 240 (558)
..+...|+++.|...++.+.+ | +...+..+...+.+.|++++|.+.+..+.+.++.+.......-..++ ...+.
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 778888999999988888875 3 55567788888899999999999999988876543322211111111 22222
Q ss_pred hHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CHHh---HHHHHHHHHHCCChHHHHH
Q 036003 241 LDLGKWIHEYIKKYGL---DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK--DTQA---WSAMIVAYATHGQGHKSIL 312 (558)
Q Consensus 241 ~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~---~~~li~~~~~~~~~~~a~~ 312 (558)
.+++...+..+.+... +.+...+..+...+...|+.++|.+++++..+. |... ...........++.+.+.+
T Consensus 241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~ 320 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEK 320 (409)
T ss_pred HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHH
Confidence 2333334444444321 236778888888999999999999999888653 2221 1222223344577888888
Q ss_pred HHHHHHHCCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 313 MFEEMMKAQVSPDE---ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 313 ~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
.++...+. .|+. ....++...+.+.|++++|.+.|+..... ...|+...+..+...+.+.|+.++|.+++++.
T Consensus 321 ~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 321 LIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88887774 4444 45567788889999999999999964432 56788888889999999999999999999874
No 47
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=8.3e-11 Score=108.69 Aligned_cols=393 Identities=12% Similarity=0.074 Sum_probs=216.3
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHccCCC----CCccc-HHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHH
Q 036003 55 VLTKLINFCTQNPTTSSMEHAHLLFDRIPE----PDIVL-FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129 (558)
Q Consensus 55 ~~~~li~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 129 (558)
+...|..-|... ....+|+..++-+.+ |+... --.+...+.+.+.+.+|++.|+-.+.+-...+..+-..++
T Consensus 203 vl~nlaqqy~~n---dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 203 VLFNLAQQYEAN---DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred HHHHHHHHhhhh---HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 344444555555 566666666665543 33222 2234455666667777777776655542222222222222
Q ss_pred ----HHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC----------------CC
Q 036003 130 ----KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE----------------PC 189 (558)
Q Consensus 130 ----~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----------------~~ 189 (558)
-.+.+. |.++.|+..|+...+. .|+..+--.|+-++..-|+.++..+.|.+|.. |+
T Consensus 280 ~nigvtfiq~--gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 280 NNIGVTFIQA--GQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred hhcCeeEEec--ccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 234455 7777777777777664 46655555555566666777777777766642 22
Q ss_pred cchHHHHH-----HHHHHCC--CccHHHHHHHHHHHCCCCCCHHH-H------------HH--------HHHHHhccCCh
Q 036003 190 VVSYNAII-----TAYARSS--RPNEALSLFRELQERNLKPTDVT-M------------LS--------ALSSCALLGSL 241 (558)
Q Consensus 190 ~~~~~~li-----~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~-~------------~~--------ll~~~~~~~~~ 241 (558)
....|.-| .-+-+.+ +.++++-.-.++..--+.|+-.. + .- -..-+.+.|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 22222211 1111111 11111111111221112222110 0 00 01124556777
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHH------------------------------------HHHhcCCHHHHHHHHhc
Q 036003 242 DLGKWIHEYIKKYGLDKYVKVNTALID------------------------------------MHAKCGRLDDAVSVFDN 285 (558)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~l~~------------------------------------~~~~~g~~~~A~~~~~~ 285 (558)
+.|.++++-..+..-..-...-+.|-. .....|++++|.+.|++
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 777776665554322111111111111 11123667777777777
Q ss_pred cCCCCHHhHHHH---HHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCCh
Q 036003 286 MSGKDTQAWSAM---IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI 362 (558)
Q Consensus 286 ~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 362 (558)
....|...-.+| .-.+-..|+.++|+..|-++..- +..+...+..+...|....+..+|.+++..... -++.|+
T Consensus 516 al~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp 592 (840)
T KOG2003|consen 516 ALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDP 592 (840)
T ss_pred HHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCH
Confidence 666554433333 23355667777777777666542 233555666667777777777777777776653 455567
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHh
Q 036003 363 KHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440 (558)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 440 (558)
....-|.+.|-+.|+-..|.+..-+- .. +-+..+..-|...|....=+++++.+|+++.-+.|.....-..+..++.+
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 77778888888888888887765443 22 23555666666667777778889999999887777654444445566778
Q ss_pred cCChHHHHHHHHHHHhC
Q 036003 441 AGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 441 ~g~~~~A~~~~~~m~~~ 457 (558)
.|+++.|+++++....+
T Consensus 673 sgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRK 689 (840)
T ss_pred cccHHHHHHHHHHHHHh
Confidence 89999999999988653
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=1.5e-10 Score=102.70 Aligned_cols=261 Identities=16% Similarity=0.162 Sum_probs=128.0
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC-CCcc------hHHHHHHHHHHCCCccHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE-PCVV------SYNAIITAYARSSRPNEAL 210 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~------~~~~li~~~~~~g~~~~A~ 210 (558)
++.++|...|-+|.+.. +.+..+.-+|.+.|.+.|..|.|+++-..+.+ ||.. +...|..-|...|-++.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45556666666665532 22334445555666666666666666555544 3332 2233445566666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcCCHHHHHHHHhcc
Q 036003 211 SLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV----KVNTALIDMHAKCGRLDDAVSVFDNM 286 (558)
Q Consensus 211 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 286 (558)
.+|..+.+.+ .--......|+..|-...+|++|..+-+++.+.+..+.. ..|.-|...+....+++.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 6666665533 122334455566666666666666666655555433321 12233333334444555555555544
Q ss_pred CCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChh
Q 036003 287 SGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK 363 (558)
Q Consensus 287 ~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 363 (558)
.+. .+.+--.+...+...|++++|++.|+...+.+..--......|..+|.+.|+.++....+.++.+. .++..
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~ 283 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGAD 283 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCcc
Confidence 322 222333344555555666666666666555432222344555555666666666666666555542 22223
Q ss_pred HHHHHHHHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHH
Q 036003 364 HYGCMVDLLGRAGRLDEAYRFI-DELPIKSTPILWRTLLSS 403 (558)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~ 403 (558)
.-..+...-....-.+.|..++ +.+..+|+...+..++..
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 3333333333333333333333 233445555555554443
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=4.5e-09 Score=98.08 Aligned_cols=404 Identities=11% Similarity=0.134 Sum_probs=305.6
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC--CCc-ccHHHHHHHHhcCCCchHHHHHHHHhH
Q 036003 38 KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE--PDI-VLFNTMARGYSRSKTPIRAIFLFVELL 114 (558)
Q Consensus 38 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 114 (558)
+.|++...... ..+...|-..+.+=.++ ..+..|..++++... |-+ ..|...+-.=-..|++..|.++|++-.
T Consensus 93 RSv~ERALdvd-~r~itLWlkYae~Emkn---k~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~ 168 (677)
T KOG1915|consen 93 RSVFERALDVD-YRNITLWLKYAEFEMKN---KQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWM 168 (677)
T ss_pred HHHHHHHHhcc-cccchHHHHHHHHHHhh---hhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 66776665544 56677888888888899 999999999998764 332 235555555556789999999999988
Q ss_pred HCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC------C
Q 036003 115 NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE------P 188 (558)
Q Consensus 115 ~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~------~ 188 (558)
+ ..|+...|.+.++-=.+. +.++.|..+++..+- +.|+..+|--....=.++|....|..+|+...+ .
T Consensus 169 ~--w~P~eqaW~sfI~fElRy--keieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 169 E--WEPDEQAWLSFIKFELRY--KEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred c--CCCcHHHHHHHHHHHHHh--hHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 7 589999999999998888 999999999999885 468999999888888999999999999998775 2
Q ss_pred CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHH--------HHHHHHhCCCC
Q 036003 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT--DVTMLSALSSCALLGSLDLGKWI--------HEYIKKYGLDK 258 (558)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~--------~~~~~~~~~~~ 258 (558)
+...+.+....-.++..++.|.-+|.-.++. ++.+ ...|......=-+-|+....... ++.+.+.+ +.
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~ 320 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CC
Confidence 3344555555556678889999999887765 3333 33455444444455665443332 23333333 56
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----CHHhHHHH--------HHHHHHCCChHHHHHHHHHHHHCCCCCC
Q 036003 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-----DTQAWSAM--------IVAYATHGQGHKSILMFEEMMKAQVSPD 325 (558)
Q Consensus 259 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l--------i~~~~~~~~~~~a~~~~~~m~~~g~~p~ 325 (558)
|-.+|-..+..-...|+.+...++|++.... .-..|..- +-.=....+.+.+.++|+..++. ++-.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHk 399 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHK 399 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcc
Confidence 7778888888888999999999999987632 11112211 12223568899999999999883 3334
Q ss_pred HHHHHHHHHHH----HccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 036003 326 EITFLGLLYAC----SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRT 399 (558)
Q Consensus 326 ~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~ 399 (558)
.+||.-+=-.| .++.++..|.+++.... |.-|-..++...|..-.+.+.++...+++++. ...| +..+|..
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 57776554433 46789999999999887 88899999999999999999999999999997 4455 6688988
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCC--cccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 400 LLSSCSSHNNLGLAKQVIERIFELDDSH--GGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 400 l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
....-...|+.+.|..+|+-+++....+ ...+-..|+.-...|.++.|..+++++.++
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 8888889999999999999998765222 235667777778899999999999999875
No 50
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.41 E-value=1.2e-10 Score=114.16 Aligned_cols=231 Identities=15% Similarity=0.146 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHh-----C-CCCc-hhHHHHHHHHHHhcCCHHHHHHHHhccCCC--------
Q 036003 225 DVTMLSALSSCALLGSLDLGKWIHEYIKKY-----G-LDKY-VKVNTALIDMHAKCGRLDDAVSVFDNMSGK-------- 289 (558)
Q Consensus 225 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------- 289 (558)
..+...+...|...|+++.|..+++...+. | ..|. ....+.+...|...+++++|..+|+++...
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346666888899999999999988887654 2 1222 223345677888999999999988887521
Q ss_pred ---CHHhHHHHHHHHHHCCChHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcC--
Q 036003 290 ---DTQAWSAMIVAYATHGQGHKSILMFEEMMK-----AQV-SPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYG-- 357 (558)
Q Consensus 290 ---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~-~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-- 357 (558)
-..+++.|..+|.+.|++++|...+++..+ .|. .|.. .-++.+...|+..+++++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 234678888899999999988888877654 122 2232 3566777788999999999999987776433
Q ss_pred CCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 036003 358 IVP----GIKHYGCMVDLLGRAGRLDEAYRFIDEL---------PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423 (558)
Q Consensus 358 ~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 423 (558)
+.+ -..+++.|...|...|++.+|.+++++. +..+ ....++.|...|.+.+++.+|.++|.+...+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 222 2467899999999999999999999886 1112 2356788899999999999999999997643
Q ss_pred ----CCCC---cccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 424 ----DDSH---GGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 424 ----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
+|.+ ..+|..|+..|.+.|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4444 4568899999999999999999998875
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=6.4e-10 Score=101.85 Aligned_cols=281 Identities=14% Similarity=0.124 Sum_probs=218.4
Q ss_pred CCChHHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 036003 172 CSDVEAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248 (558)
Q Consensus 172 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 248 (558)
.|++.+|+++..+-.+ .....|..-+.+-.+.|+.+.+-.++.+..+.--.++...+.+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 6999999999988665 2334565666777888999999999999887533455566777778888999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----------CHHhHHHHHHHHHHCCChHHHHHHHHHH
Q 036003 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-----------DTQAWSAMIVAYATHGQGHKSILMFEEM 317 (558)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m 317 (558)
..+.+.+ +.+..+......+|.+.|++.....++..+.+. ...+|+.+++-....+..+.-...|++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 9998876 556778888999999999999999999999865 2336777777777777777766777776
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHH
Q 036003 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL--PIKSTPI 395 (558)
Q Consensus 318 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~ 395 (558)
... .+-+...-..++.-+.+.|+.++|.++..+..++ +..|.. ...-...+-++...-++..+.. ....++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 554 4445666677888899999999999999999886 666651 1122344556666555555544 2223457
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036003 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 460 (558)
.+.+|...|.+++.+.+|...|+.+++..|. ..+|..+..+|.+.|+..+|.+..++....-..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 8899999999999999999999999988875 588999999999999999999999887644333
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=6e-10 Score=98.95 Aligned_cols=265 Identities=14% Similarity=0.160 Sum_probs=191.9
Q ss_pred CCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhC-CCC--hHHHHHHHHHHHHhCCChH
Q 036003 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG-LNS--NLYVCTTLINLYAECSDVE 176 (558)
Q Consensus 100 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g-~~~--~~~~~~~ll~~~~~~g~~~ 176 (558)
+.++++|.++|-+|.+... -+..+-.+|-+.+.+. |.++.|+++++.+.+.. ++- .....-.|..-|.+.|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsR--GEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSR--GEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhc--chHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 4578999999999987421 1233344555666666 99999999999888742 111 1234455677899999999
Q ss_pred HHHHHHhccCCCC---cchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCChHHHHHHHH
Q 036003 177 AARRIFENISEPC---VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV----TMLSALSSCALLGSLDLGKWIHE 249 (558)
Q Consensus 177 ~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~ 249 (558)
.|+.+|..+.+.. ..+...|+..|....+|++|+++-+++.+.+-++... .|--+...+....+++.|..++.
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999999988733 3456778999999999999999999988876444332 23344555566788999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHH----hHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC
Q 036003 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ----AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325 (558)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 325 (558)
+..+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.|+. +...|..+|.+.|+.++....+.++.+....++
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 988765 334445556788999999999999999999877654 567788999999999999999999988543333
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHh
Q 036003 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373 (558)
Q Consensus 326 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 373 (558)
.-..+-..-....-.+.|..++.+-.. -.|+...+..|++.-.
T Consensus 284 --~~l~l~~lie~~~G~~~Aq~~l~~Ql~---r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 284 --AELMLADLIELQEGIDAAQAYLTRQLR---RKPTMRGFHRLMDYHL 326 (389)
T ss_pred --HHHHHHHHHHHhhChHHHHHHHHHHHh---hCCcHHHHHHHHHhhh
Confidence 333333333344455666666555543 3699999999988754
No 53
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.41 E-value=6.1e-10 Score=111.29 Aligned_cols=99 Identities=19% Similarity=0.146 Sum_probs=78.7
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC---CCCcccHHhH
Q 036003 363 KHYGCMVDLLGRAGRLDEAYRFIDELP-----IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD---DSHGGDYVIL 434 (558)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~l 434 (558)
..|..||+.+......+.|..+.++.. ..-|..-+..+.+...+.+....+..+++++.+.- |....+...+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 578889999999999999999998883 12244567778888999999999999999987743 3334456677
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCcc
Q 036003 435 SNLCARAGRWEDVDYLRKLMKDRGVLK 461 (558)
Q Consensus 435 ~~~~~~~g~~~~A~~~~~~m~~~g~~~ 461 (558)
.+.-...|+.+...++++-+...|+.-
T Consensus 572 lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 777888999999999999998888765
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=6.2e-09 Score=99.45 Aligned_cols=399 Identities=12% Similarity=0.008 Sum_probs=276.4
Q ss_pred HHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHcc--CCCCCcccHHHHHHHHhcCCCchHHHHHHH----HhHH
Q 036003 42 AVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR--IPEPDIVLFNTMARGYSRSKTPIRAIFLFV----ELLN 115 (558)
Q Consensus 42 ~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~ 115 (558)
+.....+..|+..- -+..+|.-. ++++.|..+... +...|..+.......+.+..++++|+.++. .+..
T Consensus 40 dkV~~l~~dp~d~~--~~aq~l~~~---~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~ 114 (611)
T KOG1173|consen 40 DKVAGLTNDPADIY--WLAQVLYLG---RQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNP 114 (611)
T ss_pred HHHHhccCChHHHH--HHHHHHHhh---hHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcc
Confidence 33444444444443 456666666 788888887754 456788888888899999999999999988 2211
Q ss_pred C---------CCCCCccc----HHH-----HHH--HHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHH---HHHHh-
Q 036003 116 S---------GLLPDDYS----FPS-----LLK--ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI---NLYAE- 171 (558)
Q Consensus 116 ~---------g~~p~~~~----~~~-----ll~--~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll---~~~~~- 171 (558)
- -+.+|..- -+. .++ .+... .+.++|...|.+.+... ...+..+. ....-
T Consensus 115 f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al--~n~~~ar~~Y~~Al~~D----~~c~Ea~~~lvs~~mlt 188 (611)
T KOG1173|consen 115 FSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVAL--DNREEARDKYKEALLAD----AKCFEAFEKLVSAHMLT 188 (611)
T ss_pred hhhcchhhhceeccCcccccccccchhceeeeeeehhhhh--ccHHHHHHHHHHHHhcc----hhhHHHHHHHHHHHhcc
Confidence 0 01111111 011 111 12222 56777777777666543 22222221 11100
Q ss_pred ----------------C-CChHHHHHHHhcc----CC----------------CCcchHHHHHHHHHHCCCccHHHHHHH
Q 036003 172 ----------------C-SDVEAARRIFENI----SE----------------PCVVSYNAIITAYARSSRPNEALSLFR 214 (558)
Q Consensus 172 ----------------~-g~~~~A~~~~~~~----~~----------------~~~~~~~~li~~~~~~g~~~~A~~~~~ 214 (558)
. .+.+.-+.+|+.. .. .++...-....-+...+++.+..++++
T Consensus 189 ~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~ 268 (611)
T KOG1173|consen 189 AQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITE 268 (611)
T ss_pred hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhH
Confidence 0 1112222223211 00 222333344455677889999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC---H
Q 036003 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD---T 291 (558)
Q Consensus 215 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~ 291 (558)
...+.. ++....+..-|.++...|+..+-..+-..+.+. .|....+|-++.--|.-.|+..+|++.|.+...-| .
T Consensus 269 ~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg 346 (611)
T KOG1173|consen 269 ELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG 346 (611)
T ss_pred HHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc
Confidence 987763 556666666677888888887777777777765 35667788888888888999999999999876443 4
Q ss_pred HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 036003 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371 (558)
Q Consensus 292 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 371 (558)
..|-.+...|+-.|..++|+..+...-+. ++-....+--+.--|.+.++.+.|.++|.+... -.+.|+...+-+.-.
T Consensus 347 paWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvv 423 (611)
T KOG1173|consen 347 PAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVV 423 (611)
T ss_pred HHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhhe
Confidence 57999999999999999999999887763 121222334455567889999999999999874 334467778888877
Q ss_pred HhhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcC
Q 036003 372 LGRAGRLDEAYRFIDELP--------IKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442 (558)
Q Consensus 372 ~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 442 (558)
....+.+.+|..+|+... ..+ -..+++.|..+|.+.+.+++|+..+++++.+.|.++.+|.+++-+|...|
T Consensus 424 ay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llg 503 (611)
T KOG1173|consen 424 AYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLG 503 (611)
T ss_pred eehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhc
Confidence 788899999999998751 111 23578899999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHh
Q 036003 443 RWEDVDYLRKLMKD 456 (558)
Q Consensus 443 ~~~~A~~~~~~m~~ 456 (558)
+++.|.+.|.+...
T Consensus 504 nld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 504 NLDKAIDHFHKALA 517 (611)
T ss_pred ChHHHHHHHHHHHh
Confidence 99999999988754
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=1.9e-10 Score=105.25 Aligned_cols=196 Identities=13% Similarity=0.077 Sum_probs=148.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036003 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336 (558)
Q Consensus 260 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 336 (558)
...+..+...|...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 44555566777777777777777776542 245667777778888888888888888887753 22456667777788
Q ss_pred HccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 036003 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAK 414 (558)
Q Consensus 337 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~ 414 (558)
...|++++|.+.+++.............+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888888763222234456777788888999999999998886 3233 4567888888899999999999
Q ss_pred HHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 415 QVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
..++++.+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999888777777888888889999999999998887754
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.36 E-value=3.1e-11 Score=120.26 Aligned_cols=264 Identities=12% Similarity=0.154 Sum_probs=195.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC
Q 036003 211 SLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290 (558)
Q Consensus 211 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 290 (558)
.++..+...|+.|+.+||..+|.-||..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. ++.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46778888999999999999999999999999999 9999998888999999999999999999877665 678
Q ss_pred HHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 036003 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370 (558)
Q Consensus 291 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 370 (558)
..+|..|..+|..+||... ++..++ -.-.+...++..|....-..++..+.-..+..||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8899999999999999766 222222 233455566777776666677766543334555544 3556
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHH
Q 036003 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH-NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDY 449 (558)
Q Consensus 371 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 449 (558)
...-.|-++.+++++..+|...-...+...++-+... ..+++-....+...+ .+++.+|..++.+-..+|+.+-|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e--~~~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE--APTSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc--CCChHHHHHHHHHHHhcCchhhHHH
Confidence 6667788899999998885332111111123333322 223333333333333 4667899999999999999999999
Q ss_pred HHHHHHhCCCccCCcccEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCCcc
Q 036003 450 LRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVH 514 (558)
Q Consensus 450 ~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~ 514 (558)
++..|+++|+.-++...|.++-+ . +....++.+.+-|++.|+.|+.++.-
T Consensus 226 ll~emke~gfpir~HyFwpLl~g--------~-------~~~q~~e~vlrgmqe~gv~p~seT~a 275 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG--------I-------NAAQVFEFVLRGMQEKGVQPGSETQA 275 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc--------C-------ccchHHHHHHHHHHHhcCCCCcchhH
Confidence 99999999999999988986543 1 22345667889999999999987654
No 57
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.36 E-value=7.5e-09 Score=102.46 Aligned_cols=397 Identities=16% Similarity=0.067 Sum_probs=269.0
Q ss_pred hCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcc
Q 036003 47 THLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDY 123 (558)
Q Consensus 47 ~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 123 (558)
..+..+...|..|.-+..++ |+++.+.+.|++... .....|+.+...|...|.-..|+.+++.-....-.|+..
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~---g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRC---GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred hhhcchHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 34668899999999999999 999999999998764 345679999999999999999999998876543335444
Q ss_pred c-HHHHHHHHHhcCcccHHHHHHHHHHHHHh--CC--CChHHHHHHHHHHHHhC-----------CChHHHHHHHhccCC
Q 036003 124 S-FPSLLKACACVGAEALEEGKQLHCFAIKL--GL--NSNLYVCTTLINLYAEC-----------SDVEAARRIFENISE 187 (558)
Q Consensus 124 ~-~~~ll~~~~~~~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~ll~~~~~~-----------g~~~~A~~~~~~~~~ 187 (558)
+ +-..-+.|.... +.+++++.+..+++.. +. ......|..+.-+|... ....++.+.+++..+
T Consensus 394 s~~Lmasklc~e~l-~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 394 SVLLMASKLCIERL-KLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred hHHHHHHHHHHhch-hhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 4 444444455443 7888888888887773 21 12234454455444332 123566777777754
Q ss_pred ---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh-CCCCchhHH
Q 036003 188 ---PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY-GLDKYVKVN 263 (558)
Q Consensus 188 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ 263 (558)
.|......+.--|+..++.+.|++...+..+.+-.-+...|..+.-.+...+++.+|+.+.+..... |.... ..
T Consensus 473 ~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~--l~ 550 (799)
T KOG4162|consen 473 FDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV--LM 550 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh--hc
Confidence 2333323344457778899999999999998866778888988888899999999999988876542 21110 00
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccC------------------------------CC-C-HHhHHHHHHHHHHCC---ChH
Q 036003 264 TALIDMHAKCGRLDDAVSVFDNMS------------------------------GK-D-TQAWSAMIVAYATHG---QGH 308 (558)
Q Consensus 264 ~~l~~~~~~~g~~~~A~~~~~~~~------------------------------~~-~-~~~~~~li~~~~~~~---~~~ 308 (558)
..-+..-..-++.++|......+. ++ + ..++..+..-....+ ..+
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se 630 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSE 630 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccc
Confidence 011111222344444443332221 00 1 111211111111100 001
Q ss_pred HHHHHHHHHHHCCCC--CCH------HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 036003 309 KSILMFEEMMKAQVS--PDE------ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380 (558)
Q Consensus 309 ~a~~~~~~m~~~g~~--p~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 380 (558)
.. |...-+. |+. ..+......+.+.+..++|...+.+... ..+.....|......+...|..++
T Consensus 631 ~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 631 LK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred cc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHH
Confidence 00 1111112 221 2344555677888999999999998875 445567788888889999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 381 AYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQ--VIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 381 A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
|.+.|... ...| ++.+..++...+.+.|+..-|.. ++..+++.+|.++.+|..++.++.+.|+.++|.+.|+...+
T Consensus 703 A~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 703 AKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99999886 5556 46788999999999999888888 99999999999999999999999999999999999998765
Q ss_pred C
Q 036003 457 R 457 (558)
Q Consensus 457 ~ 457 (558)
.
T Consensus 783 L 783 (799)
T KOG4162|consen 783 L 783 (799)
T ss_pred h
Confidence 3
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=4e-09 Score=98.87 Aligned_cols=218 Identities=11% Similarity=0.017 Sum_probs=174.0
Q ss_pred HHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 036003 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279 (558)
Q Consensus 200 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 279 (558)
+.-.|+...|.+.|+..++....++ ..|..+...|....+.++..+.|....+.+ +.+..+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 4456899999999999988643333 238888888999999999999999999876 45667777788888888999999
Q ss_pred HHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhc
Q 036003 280 VSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKY 356 (558)
Q Consensus 280 ~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 356 (558)
..-|++..+- ++..|-.+..+..+.+++++++..|++.+++ ++--...|+.....+...++++.|.+.|+...+
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 9999988754 5566777777888899999999999999886 554567899999999999999999999998874
Q ss_pred CCCCC---------hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 036003 357 GIVPG---------IKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFELD 424 (558)
Q Consensus 357 ~~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 424 (558)
+.|. +.+.-+++..- -.+++..|..++.+. .+.|. ...|.+|...-.+.|+.++|+++|++...+-
T Consensus 491 -LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 -LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred -hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2333 12222233222 348999999999997 55553 5788999999999999999999999987654
No 59
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.7e-08 Score=92.73 Aligned_cols=303 Identities=10% Similarity=-0.021 Sum_probs=187.2
Q ss_pred CCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHH---H
Q 036003 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL-GLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN---A 195 (558)
Q Consensus 120 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~ 195 (558)
|...+...-+.+++..-.++-..+.+.+-.+... -++-|......+.+++...|+.++|+..|++....|..+.. .
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~ 271 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDL 271 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHH
Confidence 3333444444444332113334444444333332 24556677777888888888888888888877654433322 2
Q ss_pred HHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036003 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275 (558)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 275 (558)
....+.+.|+.+....+...+.... .-+...|..-+...-..++++.|..+-++.++.+ +.+...+-.-..++...|+
T Consensus 272 Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 272 YAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALER 349 (564)
T ss_pred HHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccc
Confidence 2334556777777777776665431 1222233333333345567777777777666654 3344455445566777788
Q ss_pred HHHHHHHHhccC--C-CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-ccCChHHHHHHHH
Q 036003 276 LDDAVSVFDNMS--G-KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL-YACS-HTGLVDEGWNYFY 350 (558)
Q Consensus 276 ~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~g~~~~a~~~~~ 350 (558)
.++|.-.|+... . -+..+|.-|+.+|...|++.+|..+-+...+. +.-+..+...+. ..|. ...--++|..+++
T Consensus 350 ~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 350 HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 888877777654 3 26777888888888888888887777665543 333455554442 2222 2233466777777
Q ss_pred HchhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 351 SMRDKYGIVPG-IKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 351 ~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
+-. .+.|+ ....+.+...+...|+.++++.++++. ...||....+.|.+.+...+.+++|...|..++.++|.+.
T Consensus 429 k~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 429 KSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred hhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 665 34454 445566677777888888888888776 5567888888888888888888888888888888888763
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=4.5e-12 Score=83.66 Aligned_cols=50 Identities=32% Similarity=0.628 Sum_probs=43.5
Q ss_pred CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHh
Q 036003 85 PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134 (558)
Q Consensus 85 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 134 (558)
||+.+||.+|++|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888888888888888888888888888888888888888888888863
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=2.6e-10 Score=101.24 Aligned_cols=227 Identities=15% Similarity=0.143 Sum_probs=157.6
Q ss_pred HHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 036003 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273 (558)
Q Consensus 194 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (558)
+.+..+|.+.|.+.+|.+.|+.-.+. .|-..||..|-.+|.+..+.+.|..++.+-.+. ++-++.....+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56778888888888888888877765 567778888888888888888888888877664 244444444455556666
Q ss_pred CCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 036003 274 GRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350 (558)
Q Consensus 274 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 350 (558)
++.++|.++|+...+. ++.+...+...|.-.++++-|+..|+++.+.|+. +...|+.+.-+|.-.+++|-++..|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 6666666666655432 4444444555555555566666666666555544 44455555555555555555555444
Q ss_pred HchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST--PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 351 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
+.... ...|+ ..+|..+.......|++..|.+.|+-++..++++.
T Consensus 383 RAlst---------------------------------at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 383 RALST---------------------------------ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHHhh---------------------------------ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 44331 11232 35677777778888999999999999999999999
Q ss_pred ccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 429 GDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
.+++.|...-.+.|++++|..+++.....
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 99999999999999999999999987664
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=3.5e-09 Score=109.11 Aligned_cols=262 Identities=11% Similarity=0.027 Sum_probs=183.2
Q ss_pred CcchHHHHHHHHHH--C---CCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh---------ccCChHHHHHHHHHHHH
Q 036003 189 CVVSYNAIITAYAR--S---SRPNEALSLFRELQERNLKPT-DVTMLSALSSCA---------LLGSLDLGKWIHEYIKK 253 (558)
Q Consensus 189 ~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 253 (558)
+...|...+.+... . +..++|.+.|++..+. .|+ ...|..+..++. ..+++++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44455555555322 1 3457899999988875 454 344554444433 23457899999999988
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH-HHH
Q 036003 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE-ITF 329 (558)
Q Consensus 254 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~ 329 (558)
.+ +.+...+..+..++...|++++|...|++..+. +...|..+...+...|++++|+..+++..+. .|+. ..+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 75 446777888888999999999999999987633 5667888999999999999999999999985 4543 233
Q ss_pred HHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhc
Q 036003 330 LGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTP-ILWRTLLSSCSSH 407 (558)
Q Consensus 330 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~ 407 (558)
..++..+...|++++|...++++... ..+.+...+..+..++...|++++|...+.++ +..|+. ...+.+...|...
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 34444566789999999999998763 22224556778888999999999999999987 444543 4455566667777
Q ss_pred CCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036003 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 408 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (558)
| ++|...++++.+.....+..+..+...|.-.|+-+.+... +++.+.|-
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 7 4788888887664422222222355566667776666665 87776543
No 63
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.3e-11 Score=81.42 Aligned_cols=50 Identities=34% Similarity=0.629 Sum_probs=44.8
Q ss_pred CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036003 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL 237 (558)
Q Consensus 188 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 237 (558)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999988874
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=3.4e-09 Score=96.83 Aligned_cols=198 Identities=10% Similarity=0.070 Sum_probs=103.7
Q ss_pred chHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 036003 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270 (558)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (558)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~------------ 97 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PN------------ 97 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC------------
Confidence 345555555566666666666665555432 2233444444455555555555555555554432 11
Q ss_pred HhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHH
Q 036003 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYF 349 (558)
Q Consensus 271 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 349 (558)
+...+..+...+...|++++|...+++.......+ ....+..+..++...|++++|...+
T Consensus 98 -------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 98 -------------------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred -------------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 23334444455555555555555555555422111 2234444555566666666666666
Q ss_pred HHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 036003 350 YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423 (558)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 423 (558)
.+.... .+.+...+..+...+...|++++|...+++. .. ..+...+..+...+...|+.++|..+.+.+...
T Consensus 159 ~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 159 TRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 666542 2223445556666666666666666666654 11 223445555556666666777766666655443
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.3e-08 Score=97.22 Aligned_cols=276 Identities=11% Similarity=0.056 Sum_probs=214.4
Q ss_pred CChHHHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036003 156 NSNLYVCTTLINLYAECSDVEAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232 (558)
Q Consensus 156 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 232 (558)
..+........+-+...+++.+..++++.+.+ .....+..-|.++...|+..+-..+=.+|.+. .+-...+|-++.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 44555666666778889999999999999877 44556667778899999998888888888876 355677898998
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHH
Q 036003 233 SSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHK 309 (558)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~ 309 (558)
--|...|+.++|+++|.+....+ +.-...|-.+...|.-.|..|+|...|....+- ....+--+.--|.+.+....
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 88889999999999999887654 223566778899999999999999888765422 22233445667888999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhc-CCC----CChhHHHHHHHHHhhcCCHHHHHH
Q 036003 310 SILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKY-GIV----PGIKHYGCMVDLLGRAGRLDEAYR 383 (558)
Q Consensus 310 a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~----~~~~~~~~li~~~~~~g~~~~A~~ 383 (558)
|.+.|.+... +-| |+..++-+.-.....+.+.+|..+|+.....- .+. ....+++.|..+|.+.+.+++|+.
T Consensus 399 Ae~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999999887 555 44566666655666889999999998877310 111 134568889999999999999999
Q ss_pred HHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHH
Q 036003 384 FIDEL--PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435 (558)
Q Consensus 384 ~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 435 (558)
.+++. ..+.+..++.++.-.|...|+++.|...|.+++.+.|++..+-..|.
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 99987 33457889999999999999999999999999999999865544444
No 66
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.22 E-value=5.7e-08 Score=87.24 Aligned_cols=295 Identities=12% Similarity=0.080 Sum_probs=209.3
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHH---HHHHHCCCccHHHHHHHHHHHCCCCCCHHHHH-HHHH
Q 036003 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII---TAYARSSRPNEALSLFRELQERNLKPTDVTML-SALS 233 (558)
Q Consensus 158 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~ 233 (558)
+..-.--|.+.+...|++..|+.-|....+-|+..|.++. ..|...|+...|+.-+.+.++. +||-..-. .-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 3344445667777788999999999998887777777665 4688889999999888888874 67754322 2234
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCc--hhHH------------HHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHH
Q 036003 234 SCALLGSLDLGKWIHEYIKKYGLDKY--VKVN------------TALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSA 296 (558)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ 296 (558)
.+.+.|.+++|..=|+.+.++....+ ...+ ...+..+...|+...|++....+.+. |...|..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 56788999999999988887653111 1111 12244456678888888888877643 7788888
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhH----HHHH----
Q 036003 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH----YGCM---- 368 (558)
Q Consensus 297 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~l---- 368 (558)
-..+|...|++..|+.-++...+..- -+..++--+-..+...|+.+.++...++.. .+.||... |-.|
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHH
Confidence 88999999999999888887766432 234455555666777888888877777665 45565432 2111
Q ss_pred -----HHHHhhcCCHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHH
Q 036003 369 -----VDLLGRAGRLDEAYRFIDEL-PIKSTP-----ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 369 -----i~~~~~~g~~~~A~~~~~~~-~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
+....+.+++.++.+-.+.. ...|.. ..+..+-.++...+++.+|++...++++.+|++..++.--..+
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 11234556777776666654 444542 2445566777888999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 036003 438 CARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 438 ~~~~g~~~~A~~~~~~m~~~g 458 (558)
|.-...|++|+.-|++..+.+
T Consensus 351 ~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HhhhHHHHHHHHHHHHHHhcC
Confidence 998889999999998887643
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.21 E-value=2.9e-09 Score=109.66 Aligned_cols=241 Identities=11% Similarity=0.030 Sum_probs=146.7
Q ss_pred ChHHHHHHHhccCC--CC-cchHHHHHHHHH---------HCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 036003 174 DVEAARRIFENISE--PC-VVSYNAIITAYA---------RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSL 241 (558)
Q Consensus 174 ~~~~A~~~~~~~~~--~~-~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 241 (558)
++++|...|++..+ |+ ...|..+..+|. ..+++++|...+++..+.+ +-+...+..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 34566666666655 22 233444443333 2234677888887777653 33555666666777777888
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHH
Q 036003 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMM 318 (558)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 318 (558)
++|...++++.+.+ +.+...+..+..++...|++++|...+++..+. +...+..++..+...|++++|...+++..
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 88888888877765 334556666777788888888888888876543 22233344445666788888888888877
Q ss_pred HCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC
Q 036003 319 KAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKST 393 (558)
Q Consensus 319 ~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~ 393 (558)
+.. .| +...+..+..++...|++++|...+.++.. ..+.+....+.+...|...| ++|...++.+ ...+.
T Consensus 434 ~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 434 SQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN 508 (553)
T ss_pred Hhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence 643 23 334456666777788888888888887654 22223344455556666666 4666655554 22222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 036003 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELD 424 (558)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 424 (558)
...+ +-..+.-.|+-+.+..+ +++.+.+
T Consensus 509 ~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 509 NPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred CchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 2223 33334455666666555 6666554
No 68
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.16 E-value=7.4e-09 Score=101.80 Aligned_cols=231 Identities=13% Similarity=0.109 Sum_probs=166.4
Q ss_pred hHHHHHHHHHHCCCccHHHHHHHHHHHC-----C-CCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHh-----C--CC
Q 036003 192 SYNAIITAYARSSRPNEALSLFRELQER-----N-LKPTDVT-MLSALSSCALLGSLDLGKWIHEYIKKY-----G--LD 257 (558)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~ 257 (558)
+...+...|...|++++|..+++...+. | ..|...+ .+.+...|...+++++|..+|+++... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3344777788888888888777766543 1 1233333 333666778888888888888887643 2 11
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccCC----------CCH-HhHHHHHHHHHHCCChHHHHHHHHHHHHC---CCC
Q 036003 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSG----------KDT-QAWSAMIVAYATHGQGHKSILMFEEMMKA---QVS 323 (558)
Q Consensus 258 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~ 323 (558)
.-..+++.|..+|.+.|++++|...+++..+ +.+ ..++.++..++..+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2245566677788889998888877776531 122 23677888899999999999999876542 122
Q ss_pred CC----HHHHHHHHHHHHccCChHHHHHHHHHchhhc----C-CCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-----
Q 036003 324 PD----EITFLGLLYACSHTGLVDEGWNYFYSMRDKY----G-IVP-GIKHYGCMVDLLGRAGRLDEAYRFIDEL----- 388 (558)
Q Consensus 324 p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~----- 388 (558)
++ ..+++.|...|...|++++|.++++++.... + ..+ ....++.|...|.+.+++.+|.++|.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 2678899999999999999999999888653 1 112 2456788899999999999999998875
Q ss_pred ---CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 036003 389 ---PIKSTP-ILWRTLLSSCSSHNNLGLAKQVIERIFE 422 (558)
Q Consensus 389 ---~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 422 (558)
+..|+. .+|..|...|...|+++.|+++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 334544 6899999999999999999999998863
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=2.1e-09 Score=95.58 Aligned_cols=229 Identities=12% Similarity=0.098 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHhccCC--CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHH-HHHHHHHh
Q 036003 160 YVCTTLINLYAECSDVEAARRIFENISE--PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTM-LSALSSCA 236 (558)
Q Consensus 160 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~ 236 (558)
.--+-+.++|.+.|.+.+|++.|+...+ +-+.||-.|...|.+..++..|+.+|.+-.+. -|-.+|| ..+.+.+.
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 3346788999999999999999988764 78889999999999999999999999988774 5655555 45667888
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHH
Q 036003 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILM 313 (558)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~ 313 (558)
..++.+.|.++++.+.+.. +.++.....+...|.-.++.+.|+++|+++.+ .++..|+.+.-+|.-.+++|-++..
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHH
Confidence 8999999999999998864 45666667778888999999999999998875 4788899999999999999999999
Q ss_pred HHHHHHCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 036003 314 FEEMMKAQVSPDE--ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI 390 (558)
Q Consensus 314 ~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 390 (558)
|++....--.|+. ..|..|-......|++..|.+.|+.... .-..+...++.|.-.-.+.|+++.|..+++.. ..
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9998875444554 4566666667788999999999998875 44456778888888888999999999988877 33
Q ss_pred CCC
Q 036003 391 KST 393 (558)
Q Consensus 391 ~~~ 393 (558)
.|+
T Consensus 459 ~P~ 461 (478)
T KOG1129|consen 459 MPD 461 (478)
T ss_pred Ccc
Confidence 444
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=6.6e-07 Score=82.57 Aligned_cols=262 Identities=8% Similarity=-0.026 Sum_probs=192.7
Q ss_pred CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 036003 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT-MLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266 (558)
Q Consensus 188 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 266 (558)
.|+.....+...+...|+.++|+..|++.... .|+..+ ...-.-.+.+.|+.+....+...+.... ......|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 56777888999999999999999999987653 343322 2222223456788887777776665442 1122223233
Q ss_pred HHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCh
Q 036003 267 IDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLV 342 (558)
Q Consensus 267 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~ 342 (558)
+......++++.|+.+-++... +++..|-.-...+.+.+++++|.-.|+..+. +.| +-..|..|+.+|...|++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchH
Confidence 4445566788888888877653 4666676667788899999999999999887 454 568999999999999999
Q ss_pred HHHHHHHHHchhhcCCCCChhHHHHHH-HH-HhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 036003 343 DEGWNYFYSMRDKYGIVPGIKHYGCMV-DL-LGRAGRLDEAYRFIDEL-PIKSTP-ILWRTLLSSCSSHNNLGLAKQVIE 418 (558)
Q Consensus 343 ~~a~~~~~~~~~~~~~~~~~~~~~~li-~~-~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~ 418 (558)
.+|.-.-+...+ .++-+..+...+. .. +.....-++|.+++++. ..+|+- ...+.+...+...|.++.++.+++
T Consensus 385 kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 999887777665 4445555554442 22 22333448899999886 677764 566777888899999999999999
Q ss_pred HHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 419 RIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
+.+...|+. ..++.|++.+...+.+++|.+.|......
T Consensus 463 ~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 463 KHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 999888764 78899999999999999999999987663
No 71
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.13 E-value=1.7e-07 Score=91.00 Aligned_cols=381 Identities=14% Similarity=0.117 Sum_probs=213.8
Q ss_pred CCHHHHHHHHccCCC-----CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHH
Q 036003 70 SSMEHAHLLFDRIPE-----PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144 (558)
Q Consensus 70 ~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~ 144 (558)
|++...+..|++... .....|...+......|-++.++.+|++.++- .| ..-+.-+.-++.. +++++|.
T Consensus 116 ~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie~L~~~--d~~~eaa 189 (835)
T KOG2047|consen 116 GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIEYLAKS--DRLDEAA 189 (835)
T ss_pred chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHHHHHhc--cchHHHH
Confidence 677777777765433 24456777777777777788888888887763 33 3355566666677 7888888
Q ss_pred HHHHHHHHhC------CCChHHHHHHHHHHHHhCCCh---HHHHHHHhccCC--CCc--chHHHHHHHHHHCCCccHHHH
Q 036003 145 QLHCFAIKLG------LNSNLYVCTTLINLYAECSDV---EAARRIFENISE--PCV--VSYNAIITAYARSSRPNEALS 211 (558)
Q Consensus 145 ~~~~~~~~~g------~~~~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~ 211 (558)
+.+...+... .+.+...|..+-+..++.-+. -....+++.+.. +|. ..|++|..-|.+.|.+++|..
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 8777766431 244555666666666655432 233445555544 332 468888889999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhcc----------------C------ChHHHHHHHHHHHHhCC-----------CC
Q 036003 212 LFRELQERNLKPTDVTMLSALSSCALL----------------G------SLDLGKWIHEYIKKYGL-----------DK 258 (558)
Q Consensus 212 ~~~~m~~~~~~p~~~~~~~ll~~~~~~----------------~------~~~~a~~~~~~~~~~~~-----------~~ 258 (558)
+|++....- .+..-|..+.++|++- + +++-....|+.+...+. +.
T Consensus 270 vyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~ 347 (835)
T KOG2047|consen 270 VYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPH 347 (835)
T ss_pred HHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCc
Confidence 988876642 2333344444433321 1 12223333333333220 11
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCCC---------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC---H
Q 036003 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---------DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD---E 326 (558)
Q Consensus 259 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~ 326 (558)
++..|..-+. +..|+..+-...|.+.... -...|..+...|-.+|+.+.|..+|++..+...+-- .
T Consensus 348 nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa 425 (835)
T KOG2047|consen 348 NVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLA 425 (835)
T ss_pred cHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHH
Confidence 2222222222 1234445555555444311 223477777788888888888888888776432211 1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHchhhc---------CCCC-------ChhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 036003 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKY---------GIVP-------GIKHYGCMVDLLGRAGRLDEAYRFIDEL-P 389 (558)
Q Consensus 327 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 389 (558)
..|..-...-.+..+++.|+.+.+...... +..| +...|..+++.....|-++....+++++ .
T Consensus 426 ~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriid 505 (835)
T KOG2047|consen 426 EVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIID 505 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 233333444455667777777776655310 0001 2345566666666777777777777776 1
Q ss_pred CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC--CCcccHHhHHHHHHh-c--CChHHHHHHHHHHHhCCCcc
Q 036003 390 IK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDD--SHGGDYVILSNLCAR-A--GRWEDVDYLRKLMKDRGVLK 461 (558)
Q Consensus 390 ~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~-~--g~~~~A~~~~~~m~~~g~~~ 461 (558)
.+ .++...-.....+..+.-++++.+++++-+.+-+ .-...|+..+.-+.+ - ...+.|..+|++..+ |.+|
T Consensus 506 LriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 506 LRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred HhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 11 1232222233334556667778888888777663 222344444433322 2 246778888888877 5544
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=9.8e-06 Score=78.56 Aligned_cols=176 Identities=15% Similarity=0.126 Sum_probs=114.8
Q ss_pred CCHHHHHHHHhccCCCC-HHhHHHHHHHHH--HCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 036003 274 GRLDDAVSVFDNMSGKD-TQAWSAMIVAYA--THGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350 (558)
Q Consensus 274 g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 350 (558)
+..+.+.++...+...- ...+..++.... +...+.++.+++...-+....-.....-..+......|+++.|.+++.
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34455555555444332 233344443322 222466777777777664222223445556667788999999999999
Q ss_pred --------HchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 036003 351 --------SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL--------PIKST-PILWRTLLSSCSSHNNLGLA 413 (558)
Q Consensus 351 --------~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~-~~~~~~l~~~~~~~g~~~~a 413 (558)
.+.+ +...+.+..+++..+.+.++.+.|..++++. ...+. ..++.-+...-.++|+.++|
T Consensus 401 ~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 401 LFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 4432 2334456667888888888877777776654 11221 23444445555678999999
Q ss_pred HHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHH
Q 036003 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKL 453 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 453 (558)
..+++++++..|++..+...++.+|++. +.+.|..+-+.
T Consensus 478 ~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 478 SSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 9999999999999999999999999887 67777776543
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=8.8e-09 Score=97.11 Aligned_cols=147 Identities=12% Similarity=-0.002 Sum_probs=76.0
Q ss_pred CCccHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 036003 204 SRPNEALSLFRELQERN-LKPT--DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV 280 (558)
Q Consensus 204 g~~~~A~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 280 (558)
+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45555666666655431 1121 2334455555666666666666666665543 234555566666666666666666
Q ss_pred HHHhccCC--C-CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHch
Q 036003 281 SVFDNMSG--K-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353 (558)
Q Consensus 281 ~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 353 (558)
+.|++..+ | +..+|..+..++...|++++|++.|++..+. .|+..........+...++.++|...|.+..
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 66665532 1 3445555555666666666666666666553 3332211111112233455666666664443
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.11 E-value=5.3e-07 Score=90.03 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHH
Q 036003 410 LGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKL 453 (558)
Q Consensus 410 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 453 (558)
.++|.++++-+.+..|++..+|..-..+|.+.|++--|.+.+.+
T Consensus 473 Le~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 473 LEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 57788888888888888888888888888888888877776653
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=5.4e-08 Score=91.77 Aligned_cols=146 Identities=8% Similarity=-0.111 Sum_probs=88.9
Q ss_pred CCChHHHHHHHhccCC-----C--CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 036003 172 CSDVEAARRIFENISE-----P--CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244 (558)
Q Consensus 172 ~g~~~~A~~~~~~~~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 244 (558)
.+..+.++.-+.++.. + ....|..+...|...|++++|...|++..+.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3455556666555543 1 12346666667777777777777777776653 33456777777777777777777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCH--HhHHHHHHHHHHCCChHHHHHHHHHHHH
Q 036003 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDT--QAWSAMIVAYATHGQGHKSILMFEEMMK 319 (558)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~ 319 (558)
...|++..+.. +.+...+..+..++...|++++|.+.|+...+.++ .........+...+++++|...|++...
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 77777777654 22345556677777777777777777776653321 1111111223345667777777765543
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.09 E-value=1.2e-08 Score=86.88 Aligned_cols=163 Identities=15% Similarity=0.129 Sum_probs=140.3
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD-EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 371 (558)
+...|.-+|.+.|+...|..-+++.++. .|+ ..++..+...|.+.|..+.|.+-|+...+ --+-+..+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHH
Confidence 3556778899999999999999999984 454 47888888899999999999999999885 334467888999999
Q ss_pred HhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHH
Q 036003 372 LGRAGRLDEAYRFIDELPIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447 (558)
Q Consensus 372 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 447 (558)
+|..|++++|...|++.-..|+ ..+|..+.-+..+.|+.+.|...|++.++.+|..+.+...+.....+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999999733332 468888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 036003 448 DYLRKLMKDRGV 459 (558)
Q Consensus 448 ~~~~~~m~~~g~ 459 (558)
..++++....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999999887665
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.06 E-value=1.1e-06 Score=85.79 Aligned_cols=101 Identities=17% Similarity=0.153 Sum_probs=76.7
Q ss_pred CCChhHH--HHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhH
Q 036003 359 VPGIKHY--GCMVDLLGRAGRLDEAYRFIDEL-PIKSTPI-LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434 (558)
Q Consensus 359 ~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 434 (558)
+|....| -.++..|-+.|+++.|..+++.. ...|+.+ .|..=.+.+...|++++|...++++.+++.+|...-.--
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 4444444 45677888999999999999987 5566643 444555778888999999999999999997764444455
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC
Q 036003 435 SNLCARAGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 435 ~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (558)
+.-..++.+.++|.++..+..+.|.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhccc
Confidence 6667788999999999988877664
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.05 E-value=1.4e-06 Score=85.03 Aligned_cols=342 Identities=15% Similarity=0.100 Sum_probs=205.3
Q ss_pred CCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHH
Q 036003 70 SSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQL 146 (558)
Q Consensus 70 ~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~ 146 (558)
|+-++|........+ .+.+.|..+.-.+-...++++|++.|+...+.+.. |...+.-+--.-++. |+++.....
T Consensus 55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~Qm--Rd~~~~~~t 131 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQM--RDYEGYLET 131 (700)
T ss_pred cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHH--HhhhhHHHH
Confidence 788888887776665 34556777777777778888888888888775322 344455444444555 777777777
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC-----CCcchHHHH------HHHHHHCCCccHHHHHHHH
Q 036003 147 HCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE-----PCVVSYNAI------ITAYARSSRPNEALSLFRE 215 (558)
Q Consensus 147 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l------i~~~~~~g~~~~A~~~~~~ 215 (558)
...+.+.. +.....|..+..++.-.|+...|..+.+...+ ++...|.-. .......|..++|++.+..
T Consensus 132 r~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 132 RNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 76666643 33556677777777778888888777766543 333333222 1334566777777777655
Q ss_pred HHHCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhccCCC----
Q 036003 216 LQERNLKPTDVTM-LSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV-SVFDNMSGK---- 289 (558)
Q Consensus 216 m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~---- 289 (558)
-... ..|...+ ..-...+.+.+++++|..++..+.... +.+...|-.+..++.+-.+.-++. .+|....+.
T Consensus 211 ~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 211 NEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred hhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 4332 1222222 233455667788888888888877764 333444444455554222222222 445444211
Q ss_pred -----------C--------------------HHhHHHHHHHHHHCCChHHHHHHHHHHHH--------CCC--------
Q 036003 290 -----------D--------------------TQAWSAMIVAYATHGQGHKSILMFEEMMK--------AQV-------- 322 (558)
Q Consensus 290 -----------~--------------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~--------~g~-------- 322 (558)
+ +.++..+...|-. +.++- +++++.. .|.
T Consensus 288 e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~---p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 288 ECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKD---PEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred ccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhc---hhHhH-HHHHHHHHHHhhcccccCCCcccccc
Confidence 0 1112222222221 11111 3333221 111
Q ss_pred --CCCH--HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHH
Q 036003 323 --SPDE--ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG-IKHYGCMVDLLGRAGRLDEAYRFIDELP--IKSTPI 395 (558)
Q Consensus 323 --~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~ 395 (558)
+|.. .++..++..+-+.|+++.|..+++.... ..|+ ++.|..-.+.+...|.+++|..++++.. ..+|..
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence 3444 4556677788889999999999988874 3444 5666677788899999999999998872 234444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 036003 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDD 425 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 425 (558)
.-.--..-..+.++.++|.++....-+.+.
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 433555666788899999999888877665
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.04 E-value=4.1e-07 Score=90.82 Aligned_cols=121 Identities=11% Similarity=0.041 Sum_probs=60.9
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 036003 266 LIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342 (558)
Q Consensus 266 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 342 (558)
+...|-..|++++|+++++...+. .+..|..-...+-..|++.+|.+.++........ |...=+.....+.+.|++
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~ 278 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRI 278 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCH
Confidence 344455556666666666554432 2334555555566666666666666665553221 333444444555566666
Q ss_pred HHHHHHHHHchhhcCCCCChhH--------HHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 343 DEGWNYFYSMRDKYGIVPGIKH--------YGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 343 ~~a~~~~~~~~~~~~~~~~~~~--------~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
++|.+++...... +..|.... ......+|.+.|++..|++.|..+
T Consensus 279 e~A~~~~~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 279 EEAEKTASLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHHHHHHhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666666655543 32221111 122344555666666665554443
No 80
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=1.6e-07 Score=82.86 Aligned_cols=393 Identities=11% Similarity=0.018 Sum_probs=241.8
Q ss_pred CCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCC---CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCccc
Q 036003 48 HLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP---DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYS 124 (558)
Q Consensus 48 g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 124 (558)
|+.....-+++.+..+.+. .++++|++++..-.++ +....+.|..+|-...++..|.+.|+++-.. -|...-
T Consensus 5 g~~i~EGeftaviy~lI~d---~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~q 79 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRD---ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQ 79 (459)
T ss_pred cccCCCCchHHHHHHHHHH---hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHH
Confidence 3333344466677777787 8999999988776553 4556777888888999999999999998764 444444
Q ss_pred HHHH-HHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHH--HHHHhCCChHHHHHHHhccCC-CCcchHHHHHHHH
Q 036003 125 FPSL-LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI--NLYAECSDVEAARRIFENISE-PCVVSYNAIITAY 200 (558)
Q Consensus 125 ~~~l-l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll--~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~ 200 (558)
|..- ...+-+. +.+..|+++...|... ++...-..-+ ......+|+..+..+.++... .+..+.+......
T Consensus 80 YrlY~AQSLY~A--~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCll 154 (459)
T KOG4340|consen 80 YRLYQAQSLYKA--CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLL 154 (459)
T ss_pred HHHHHHHHHHHh--cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchhee
Confidence 4322 1223344 7788888888777542 2222211112 223467899999999999984 6666777777777
Q ss_pred HHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-------------chh------
Q 036003 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK-------------YVK------ 261 (558)
Q Consensus 201 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~------ 261 (558)
.+.|+++.|++-|+...+-+---....|+..+ +..+.++.+.|.+...++.++|+.. |+.
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTL 233 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchH
Confidence 88999999999999887654333445666554 4557789999999999998877521 111
Q ss_pred ---------HHHHHHHHHHhcCCHHHHHHHHhccCCC-----CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHH
Q 036003 262 ---------VNTALIDMHAKCGRLDDAVSVFDNMSGK-----DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327 (558)
Q Consensus 262 ---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 327 (558)
.+|.-...+.+.|+++.|.+.+..|+.+ |++|...+.-. -..+++.+..+-+.-+.+... -...
T Consensus 234 ~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~E 311 (459)
T KOG4340|consen 234 VLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPE 311 (459)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChH
Confidence 1222233456789999999999999855 66665444322 123556666666666666432 3457
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHchhhcCCC-CChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH-H
Q 036003 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV-PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSC-S 405 (558)
Q Consensus 328 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~-~ 405 (558)
||..++-.||+..-++.|-.++.+-... ... .+...|+.|=......-..++|.+-++.+...-....-...+..- .
T Consensus 312 TFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~ 390 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEA 390 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999888888887654331 111 233344433333334455666666555441000000001111111 1
Q ss_pred hcCCH----HHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 406 SHNNL----GLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 406 ~~g~~----~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
+..+- ..+.+-+++.+++-- .+...-...|.+..++..+.++|+.-.+.
T Consensus 391 r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 391 RHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 11111 222333333333321 13455667788889999999999877653
No 81
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.03 E-value=2.3e-05 Score=76.69 Aligned_cols=411 Identities=13% Similarity=0.151 Sum_probs=271.0
Q ss_pred HHHHHHHHccCCCCCcccHHHHHHHHhcCCCchHHHHHHHHhHHC-CCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHH
Q 036003 72 MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS-GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFA 150 (558)
Q Consensus 72 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~ 150 (558)
++.+..++.+|++ .|-..+..+.++|++......|+..+.. -+......|...+.-.... +-++.+..+++..
T Consensus 91 ~er~lv~mHkmpR----Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~--~lPets~rvyrRY 164 (835)
T KOG2047|consen 91 FERCLVFMHKMPR----IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESH--GLPETSIRVYRRY 164 (835)
T ss_pred HHHHHHHHhcCCH----HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhC--CChHHHHHHHHHH
Confidence 4445556666654 6888888999999999999999988764 4444556788888877777 8889999999998
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC----------CCcchHHHHHHHHHHCCC---ccHHHHHHHHHH
Q 036003 151 IKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE----------PCVVSYNAIITAYARSSR---PNEALSLFRELQ 217 (558)
Q Consensus 151 ~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~ 217 (558)
++. ++..-+--+..+++.+++++|.+.+..... .+...|+.+.....+.-+ --...++++.+.
T Consensus 165 Lk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi 240 (835)
T KOG2047|consen 165 LKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI 240 (835)
T ss_pred Hhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc
Confidence 874 333467788899999999999999988764 334457666666555432 333445555554
Q ss_pred HCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc----------------C-----
Q 036003 218 ERNLKPTD--VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC----------------G----- 274 (558)
Q Consensus 218 ~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g----- 274 (558)
.. -+|. ..|.+|..-|.+.|.+++|..+|++....-. ...-|+.+.++|+.- |
T Consensus 241 ~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~ 316 (835)
T KOG2047|consen 241 RR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDD 316 (835)
T ss_pred cc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhh
Confidence 43 3454 3678899999999999999999998876532 222233333333321 1
Q ss_pred -CHHHHHHHHhccCCC---------------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH------HHHHHH
Q 036003 275 -RLDDAVSVFDNMSGK---------------DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE------ITFLGL 332 (558)
Q Consensus 275 -~~~~A~~~~~~~~~~---------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~l 332 (558)
+++-....|+.+..+ ++..|..-+. ...|+..+-...|.+..+. +.|.. ..|..+
T Consensus 317 ~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~f 393 (835)
T KOG2047|consen 317 VDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEF 393 (835)
T ss_pred hhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHH
Confidence 122233333333221 2333433322 2356778888888888775 44432 467788
Q ss_pred HHHHHccCChHHHHHHHHHchhhcCCCCC---hhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCC--------------
Q 036003 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPG---IKHYGCMVDLLGRAGRLDEAYRFIDEL---PIKS-------------- 392 (558)
Q Consensus 333 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~-------------- 392 (558)
...|-..|+++.|..+|++..+. ..+-- ..+|..-..+-.+..+++.|++++++. |..|
T Consensus 394 aklYe~~~~l~~aRvifeka~~V-~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~r 472 (835)
T KOG2047|consen 394 AKLYENNGDLDDARVIFEKATKV-PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQAR 472 (835)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHH
Confidence 88899999999999999998863 33322 456666677777889999999999987 2221
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEE
Q 036003 393 ---TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIE 469 (558)
Q Consensus 393 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ 469 (558)
+...|..+++..-..|-++....++++++++.-..|......+..+....-++++.+++++=.. +.+-|..+- +
T Consensus 473 lhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~--LFk~p~v~d-i 549 (835)
T KOG2047|consen 473 LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGIS--LFKWPNVYD-I 549 (835)
T ss_pred HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCc--cCCCccHHH-H
Confidence 1235666666667788999999999999998866666666666666677778999999875332 233333221 1
Q ss_pred ECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCcccC
Q 036003 470 VNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPD 509 (558)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd 509 (558)
|+..+..|+..++.. . .+.++.||++-.+ |+.|+
T Consensus 550 W~tYLtkfi~rygg~-k----lEraRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 550 WNTYLTKFIKRYGGT-K----LERARDLFEQALD-GCPPE 583 (835)
T ss_pred HHHHHHHHHHHhcCC-C----HHHHHHHHHHHHh-cCCHH
Confidence 222233333332211 1 2334456666655 88887
No 82
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.02 E-value=5.5e-10 Score=87.38 Aligned_cols=76 Identities=66% Similarity=1.000 Sum_probs=61.6
Q ss_pred cccEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCCcccCCCChHHH--------HHHhhhchHHHH
Q 036003 464 GCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEK--------EIALRYHSEKLA 535 (558)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~--------~~~l~~~~~~~~ 535 (558)
+++|+.+ +.|+.++..||.. ++..++...|+.|++..+. .+++++++ +..+..|+||+|
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~d~~~~~~~~~~HSEKlA 68 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVG-HDVDEEEKHDYDEEEKEESLCYHSEKLA 68 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhC-CCchhhhhhhcccccchhhhhccHHHHH
Confidence 4567655 7899999999976 4667888889999988877 34544433 568899999999
Q ss_pred HHHhhcCCCCCCcEEEeccc-cCC
Q 036003 536 ITFGLLNTPPGTTIRVVKNL-RVC 558 (558)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~-~~~ 558 (558)
++|+++.+ ++++|+ |||
T Consensus 69 iafgli~~------~vvkn~~RvC 86 (116)
T PF14432_consen 69 IAFGLINT------RVVKNLKRVC 86 (116)
T ss_pred HHhcccce------eEEecCCccc
Confidence 99999988 888888 999
No 83
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=5.1e-07 Score=86.31 Aligned_cols=367 Identities=13% Similarity=0.087 Sum_probs=236.2
Q ss_pred CCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCc-ccHHHHHHHHHhcCcccHHHHHH
Q 036003 70 SSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDD-YSFPSLLKACACVGAEALEEGKQ 145 (558)
Q Consensus 70 ~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~~~a~~ 145 (558)
|+++.|...|..... +|-..|+.-..+|+..|++++|++=-.+-++ +.|+- ..|.-.-.++... |++++|..
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~l--g~~~eA~~ 91 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGL--GDYEEAIL 91 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhc--ccHHHHHH
Confidence 999999999987653 5677789999999999999999887766665 45553 4577777777777 99999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhc------cCC-------CCcchHHHHHHHHHHC---------
Q 036003 146 LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN------ISE-------PCVVSYNAIITAYARS--------- 203 (558)
Q Consensus 146 ~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~------~~~-------~~~~~~~~li~~~~~~--------- 203 (558)
-|.+-++.. +.+...++.|..++.- +. .+.+.|.. +.. .....|..++..+-+.
T Consensus 92 ay~~GL~~d-~~n~~L~~gl~~a~~~--~~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 92 AYSEGLEKD-PSNKQLKTGLAQAYLE--DY-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHhhcC-CchHHHHHhHHHhhhH--HH-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 999888764 5567777888777711 11 11222211 110 0111233333222211
Q ss_pred -CCccHHHHHHHH-----HHHCC-------CCC------------C----------HHHHHHHHHHHhccCChHHHHHHH
Q 036003 204 -SRPNEALSLFRE-----LQERN-------LKP------------T----------DVTMLSALSSCALLGSLDLGKWIH 248 (558)
Q Consensus 204 -g~~~~A~~~~~~-----m~~~~-------~~p------------~----------~~~~~~ll~~~~~~~~~~~a~~~~ 248 (558)
.+...|...+.. +...| ..| | ..-...+.++..+..+++.+.+-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 111111111110 00000 111 0 012344566666777788888888
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHH---hHH-------HHHHHHHHCCChHHHHHHHHHHH
Q 036003 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ---AWS-------AMIVAYATHGQGHKSILMFEEMM 318 (558)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~-------~li~~~~~~~~~~~a~~~~~~m~ 318 (558)
....+.. -++..++....+|...|.+.++...-+...+.... -|+ .+..+|.+.++++.++..|++..
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 8777765 56666677778888888887777666554433111 122 23445666777888888888866
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHH
Q 036003 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI-KHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPI 395 (558)
Q Consensus 319 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~ 395 (558)
.....|+.. .+....+++........ -+.|.. .-...-...+.+.|++..|.+.+.++ ...| |..
T Consensus 326 te~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 326 TEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred hhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 544444322 22233344444333332 233332 11223366788899999999999997 3344 678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCC
Q 036003 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
.|....-+|.+.|.+..|+.-.+..++++|+....|..-+.++....+|++|.+.|++-.+.+
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888899999999999999999999999999999999999999999999999999999887754
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.96 E-value=3.9e-07 Score=77.78 Aligned_cols=87 Identities=15% Similarity=0.102 Sum_probs=34.1
Q ss_pred HHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036003 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275 (558)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 275 (558)
|.-+|.+.|+...|..-+++.++.. +.+..++..+...|.+.|+.+.|.+.|++..+.. +-+..+.|.....+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC
Confidence 3334444444444444444444331 1222334444444444444444444444443332 2223333333333344444
Q ss_pred HHHHHHHHh
Q 036003 276 LDDAVSVFD 284 (558)
Q Consensus 276 ~~~A~~~~~ 284 (558)
+++|...|+
T Consensus 119 ~~eA~q~F~ 127 (250)
T COG3063 119 PEEAMQQFE 127 (250)
T ss_pred hHHHHHHHH
Confidence 444443333
No 85
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=1e-06 Score=88.05 Aligned_cols=356 Identities=16% Similarity=0.131 Sum_probs=230.6
Q ss_pred CChhHHHHHHH--HhhcCCCCCCHHHHHHHHccCCCCCcccHHHHHHHHhcCCCchHHHHHHHHhHHC-CC--------C
Q 036003 51 NDLNVLTKLIN--FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS-GL--------L 119 (558)
Q Consensus 51 ~~~~~~~~li~--~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--------~ 119 (558)
-|..+-.++++ +|..- |+.+.|.+-.+.+. +...|..|.+.+.+.++.+-|.-.+-.|... |. .
T Consensus 724 Cd~~TRkaml~FSfyvti---G~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTI---GSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred cCHHHHHhhhceeEEEEe---ccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 45667777776 67777 99999998887765 5678999999999999998888877776542 21 1
Q ss_pred CCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC-CCcchHHHHHH
Q 036003 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE-PCVVSYNAIIT 198 (558)
Q Consensus 120 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~ 198 (558)
|+ .+=.-+.-..... |.+++|+.+|++..+.+ .|=..|-..|.+++|.++-+.-.. .=..||.....
T Consensus 799 ~~-e~eakvAvLAieL--gMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~ 866 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIEL--GMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAK 866 (1416)
T ss_pred Cc-chhhHHHHHHHHH--hhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHH
Confidence 22 2222222223345 99999999999887643 444677788999999998765433 12235666666
Q ss_pred HHHHCCCccHHHHHHHHH----------HHCC---------CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc
Q 036003 199 AYARSSRPNEALSLFREL----------QERN---------LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259 (558)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m----------~~~~---------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 259 (558)
-+-..++.+.|++.|++. .... -..|...|..-.......|+.|.|+.+|...++.
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~----- 941 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY----- 941 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh-----
Confidence 666778888888887763 2211 1123333444445555677888888887776653
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036003 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339 (558)
Q Consensus 260 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 339 (558)
-.+++..|-.|+.++|-++-++- .|..+...+...|-..|++.+|...|.+... |...|+.|-..
T Consensus 942 ----fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEn 1006 (1416)
T KOG3617|consen 942 ----FSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKEN 1006 (1416)
T ss_pred ----hhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhc
Confidence 45677777788888888776653 3666677788899999999999999887643 33444333222
Q ss_pred ---------------CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh-------------CCCC
Q 036003 340 ---------------GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE-------------LPIK 391 (558)
Q Consensus 340 ---------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------------~~~~ 391 (558)
.+.-.|-.+|++.- . -..--+..|-++|.+.+|+++--+ +...
T Consensus 1007 d~~d~L~nlal~s~~~d~v~aArYyEe~g----~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 1007 DMKDRLANLALMSGGSDLVSAARYYEELG----G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred CHHHHHHHHHhhcCchhHHHHHHHHHHcc----h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC
Confidence 22333334444332 1 112234567788888888765311 1223
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc---------------------cC-CC------C---cccHHhHHHHHHh
Q 036003 392 STPILWRTLLSSCSSHNNLGLAKQVIERIFE---------------------LD-DS------H---GGDYVILSNLCAR 440 (558)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------------------~~-~~------~---~~~~~~l~~~~~~ 440 (558)
.|+...+.-...+..+.++++|..++-.+.+ +- |. . ......++..|.+
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~q 1157 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQ 1157 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHh
Confidence 4666777777777777888888777654432 10 11 0 1246678899999
Q ss_pred cCChHHHHHHHH
Q 036003 441 AGRWEDVDYLRK 452 (558)
Q Consensus 441 ~g~~~~A~~~~~ 452 (558)
+|.|..|.+-|.
T Consensus 1158 QG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1158 QGAYHAATKKFT 1169 (1416)
T ss_pred ccchHHHHHHHh
Confidence 999888877654
No 86
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.94 E-value=6.6e-08 Score=89.83 Aligned_cols=246 Identities=9% Similarity=0.025 Sum_probs=131.4
Q ss_pred HhCCChHHHHHHHhccCC----CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 036003 170 AECSDVEAARRIFENISE----PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245 (558)
Q Consensus 170 ~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 245 (558)
.-.|.+..++.-.+ ... .+......+.+++...|+++.++ .+..... .|.......+...+...++-+.+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34556666554443 111 11223344556666666655433 3332222 444444444444333323333333
Q ss_pred HHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC
Q 036003 246 WIHEYIKKYGLD-KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324 (558)
Q Consensus 246 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 324 (558)
.-++........ .+..+......++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~e 162 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DE 162 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Confidence 333222222212 22222223334566678888887777665 45566666777788888888888888887763 33
Q ss_pred CHHHHHHHHHHHHc----cCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 036003 325 DEITFLGLLYACSH----TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWR 398 (558)
Q Consensus 325 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~ 398 (558)
| .+...+..++.. .+.+.+|..+|+++.+ ...+++.+.+.+..++...|++++|.+++.+. ...| ++.+..
T Consensus 163 D-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La 239 (290)
T PF04733_consen 163 D-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA 239 (290)
T ss_dssp C-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred c-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence 3 334444444322 3357778888888765 44566677777777777777777777777765 2223 455666
Q ss_pred HHHHHHHhcCCH-HHHHHHHHHHHccCCCC
Q 036003 399 TLLSSCSSHNNL-GLAKQVIERIFELDDSH 427 (558)
Q Consensus 399 ~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~ 427 (558)
.++.+....|+. +.+.+++.++....|.+
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 666666666666 55667777777666664
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=5.6e-08 Score=93.49 Aligned_cols=216 Identities=14% Similarity=0.132 Sum_probs=171.2
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHH
Q 036003 235 CALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSI 311 (558)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~ 311 (558)
+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+- |..+.-.|...|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356788888888888888765 556788888888888888888888888877643 6667778888899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-----------HHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 036003 312 LMFEEMMKAQVSPDEITFLGLL-----------YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380 (558)
Q Consensus 312 ~~~~~m~~~g~~p~~~~~~~ll-----------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 380 (558)
+.++.-+....+ |..+. ..+.....+....++|-++....+..+|..++..|.-.|--.|.+++
T Consensus 374 ~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999887663211 11111 11222233445566666666544656888899999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 381 AYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 381 A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
|.+.|+.. .++| |...||-|...+....+.++|+..|.+++++.|.-..+...|+..|...|.|++|.+.|=....
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999987 5566 5689999999999999999999999999999999999999999999999999999998866554
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.90 E-value=3.5e-06 Score=82.51 Aligned_cols=195 Identities=13% Similarity=0.014 Sum_probs=101.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHH
Q 036003 264 TALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV-SPDE--ITFLGLLYACS 337 (558)
Q Consensus 264 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~~~~~ll~~~~ 337 (558)
..+...+...|++++|.+.+++..+. +...+..+...+...|++++|...+++...... .|+. ..|..+...+.
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 34445556666666666666655422 344556666666666666666666666655321 1222 23345556666
Q ss_pred ccCChHHHHHHHHHchhhcCCCCChhHH-H--HHHHHHhhcCCHHHHHHH---HHhC----CCCCCHHHHHHHHHHHHhc
Q 036003 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHY-G--CMVDLLGRAGRLDEAYRF---IDEL----PIKSTPILWRTLLSSCSSH 407 (558)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~--~li~~~~~~g~~~~A~~~---~~~~----~~~~~~~~~~~l~~~~~~~ 407 (558)
..|++++|..++++........+..... + .++..+...|....+.++ .... +.............++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 6777777777776654221111111111 1 222222233322222221 1111 1001111222455566777
Q ss_pred CCHHHHHHHHHHHHccCCC---------CcccHHhHHHHHHhcCChHHHHHHHHHHHhCC
Q 036003 408 NNLGLAKQVIERIFELDDS---------HGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 408 g~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
|+.+.|..+++.+...... ..........++...|++++|.+.+......+
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888888888877653311 12234455666789999999999998877643
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.89 E-value=3.1e-08 Score=92.04 Aligned_cols=244 Identities=12% Similarity=0.053 Sum_probs=163.9
Q ss_pred HHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 036003 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277 (558)
Q Consensus 198 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 277 (558)
+-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.+. .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34455788888886655 222211223345556778888888876543 3333333 666666655554444335555
Q ss_pred HHHHHHhccC-CC----CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHc
Q 036003 278 DAVSVFDNMS-GK----DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352 (558)
Q Consensus 278 ~A~~~~~~~~-~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 352 (558)
.+..-++... +. +....-.....+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6665554433 32 2222222234566779999999988752 35677778889999999999999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHh----hcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 353 RDKYGIVPGIKHYGCMVDLLG----RAGRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 353 ~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
.+ +..|. +...|..++. -.+.+.+|..+|+++ ...+++.+.+.+..+....|++++|.++++++++.+|.
T Consensus 158 ~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 74 34443 3334444433 345799999999999 44578889999999999999999999999999999999
Q ss_pred CcccHHhHHHHHHhcCCh-HHHHHHHHHHHh
Q 036003 427 HGGDYVILSNLCARAGRW-EDVDYLRKLMKD 456 (558)
Q Consensus 427 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 456 (558)
++.+...++.+....|+. +.+.+++.+++.
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 999999999999999988 667888888776
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.89 E-value=7.4e-06 Score=90.89 Aligned_cols=328 Identities=12% Similarity=-0.026 Sum_probs=173.3
Q ss_pred HHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC------CC--hHHHHHHHHH
Q 036003 96 GYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL------NS--NLYVCTTLIN 167 (558)
Q Consensus 96 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~------~~--~~~~~~~ll~ 167 (558)
.+...|+++.+..+++.+.......+..........+... ++++++...+......-- .+ .......+..
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~--g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ--HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC--CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 3445566666666665542211111222222222333344 777887777776654310 11 1122222334
Q ss_pred HHHhCCChHHHHHHHhccCC----CCc----chHHHHHHHHHHCCCccHHHHHHHHHHHCCC---CC--CHHHHHHHHHH
Q 036003 168 LYAECSDVEAARRIFENISE----PCV----VSYNAIITAYARSSRPNEALSLFRELQERNL---KP--TDVTMLSALSS 234 (558)
Q Consensus 168 ~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p--~~~~~~~ll~~ 234 (558)
.+...|++++|...+++... .+. ...+.+...+...|++++|...+.+.....- .+ ....+..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 55667888888777766432 111 2334555566677888888777776653210 11 11234445556
Q ss_pred HhccCChHHHHHHHHHHHHh----CCC--C-chhHHHHHHHHHHhcCCHHHHHHHHhccCCC--------CHHhHHHHHH
Q 036003 235 CALLGSLDLGKWIHEYIKKY----GLD--K-YVKVNTALIDMHAKCGRLDDAVSVFDNMSGK--------DTQAWSAMIV 299 (558)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~ 299 (558)
+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+++.... ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 67778888887777665442 211 1 1223444555666678888877777655321 1223444556
Q ss_pred HHHHCCChHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHHccCChHHHHHHHHHchhhcCCCCC---hhHHHHHHH
Q 036003 300 AYATHGQGHKSILMFEEMMKAQ--VSPDEI--TF--LGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG---IKHYGCMVD 370 (558)
Q Consensus 300 ~~~~~~~~~~a~~~~~~m~~~g--~~p~~~--~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~ 370 (558)
.+...|++++|...+++..... ...... .. ...+..+...|+.+.|...+...... ..... ...+..+..
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHH
Confidence 6677788888877777764421 110000 00 11123334467777777776665431 11111 011334556
Q ss_pred HHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 371 LLGRAGRLDEAYRFIDEL-------PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 371 ~~~~~g~~~~A~~~~~~~-------~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
++...|+.++|..++++. +...+ ..+...+..++...|+.++|...+.++++....
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 677777777777777665 11111 234555566677778888888888887776533
No 91
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=3e-06 Score=76.76 Aligned_cols=385 Identities=12% Similarity=0.046 Sum_probs=227.1
Q ss_pred HHHHHHH-HhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHH
Q 036003 55 VLTKLIN-FCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130 (558)
Q Consensus 55 ~~~~li~-~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 130 (558)
..+..|. .|-+. |++++|...+..+.+ ++...+-.|.-.+.-.|.+.+|..+-....+ ++..-..++.
T Consensus 58 ~~~lWia~C~fhL---gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfh 129 (557)
T KOG3785|consen 58 SLQLWIAHCYFHL---GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFH 129 (557)
T ss_pred HHHHHHHHHHHhh---ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHH
Confidence 4444455 33445 899999888877654 5556666666666667778888776654422 2223333444
Q ss_pred HHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC--CCcchHHH-HHHHHHHCCCcc
Q 036003 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE--PCVVSYNA-IITAYARSSRPN 207 (558)
Q Consensus 131 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~ 207 (558)
...+. ++-++...++..+.. ...-.-+|.........+++|++++.++.. |+-...|. +.-+|.+..-++
T Consensus 130 lahkl--ndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYyd 202 (557)
T KOG3785|consen 130 LAHKL--NDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYD 202 (557)
T ss_pred HHHHh--CcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhh
Confidence 44455 677777666665543 223334455555555678999999999876 44444444 344677778888
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHhc--cCChHHHH------------HHHHHHHHhCC------------CCc-
Q 036003 208 EALSLFRELQERNLKPTDV-TMLSALSSCAL--LGSLDLGK------------WIHEYIKKYGL------------DKY- 259 (558)
Q Consensus 208 ~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~--~~~~~~a~------------~~~~~~~~~~~------------~~~- 259 (558)
-+.+++.--.+. -||+. ..+.......+ .|+..+.+ ...+.+.++++ -|.
T Consensus 203 vsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L 280 (557)
T KOG3785|consen 203 VSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSL 280 (557)
T ss_pred hHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHH
Confidence 888888776654 34433 23322221111 11111110 11222222211 000
Q ss_pred ----hhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCC-------hHHHHHHHHHHHHCCCCCCH-H
Q 036003 260 ----VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ-------GHKSILMFEEMMKAQVSPDE-I 327 (558)
Q Consensus 260 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~m~~~g~~p~~-~ 327 (558)
+..--.|+--|.+.+++++|..+.+++....+.-|-.-...++..|+ ..-|...|+-.-..+..-|. .
T Consensus 281 ~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIp 360 (557)
T KOG3785|consen 281 MKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIP 360 (557)
T ss_pred HhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccccccc
Confidence 11112355568899999999999999877666655444444444443 33444445444344433222 1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHH-HHHHH
Q 036003 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP--IKSTPILWRT-LLSSC 404 (558)
Q Consensus 328 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~-l~~~~ 404 (558)
.-.++..++.-..++++.+.+++.+.. +-...|... -.+..+++..|.+.+|+++|-++. .-.|..+|.+ |.++|
T Consensus 361 GRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCy 438 (557)
T KOG3785|consen 361 GRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCY 438 (557)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHH
Confidence 223344445555678888888888876 233334433 357899999999999999998882 1135566655 55677
Q ss_pred HhcCCHHHHHHHHHHHHccC-CCCc-ccHHhHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 036003 405 SSHNNLGLAKQVIERIFELD-DSHG-GDYVILSNLCARAGRWEDVDYLRKLMKDRGVLK 461 (558)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 461 (558)
.+.++.+.|..++ ++.+ |... .....+..-|.+++.+--|.+.|+.+...+..|
T Consensus 439 i~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 439 IRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 8889998886654 4444 2222 234455677889999988888888887654433
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.88 E-value=6.6e-06 Score=80.58 Aligned_cols=193 Identities=10% Similarity=-0.048 Sum_probs=97.6
Q ss_pred cHHHHHHHHhcCCCchHHHHHHHHhHHCCC-CCCcccHHHHHHH--HHhcCcccHHHHHHHHHHHHHhCCCChHHHHHH-
Q 036003 89 LFNTMARGYSRSKTPIRAIFLFVELLNSGL-LPDDYSFPSLLKA--CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTT- 164 (558)
Q Consensus 89 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~--~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~- 164 (558)
.|..+...+...|+.+.+...+....+... .++..... .+.+ +... |++++|.+.+++..+.. +.+...+..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~a~~~~~~--g~~~~A~~~~~~~l~~~-P~~~~a~~~~ 83 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERA-HVEALSAWIA--GDLPKALALLEQLLDDY-PRDLLALKLH 83 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHH-HHHHHHHHHc--CCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence 455555666666777776666665544311 11211111 1222 2233 78888888888777653 333333331
Q ss_pred --HHHHHHhCCChHHHHHHHhccCC--CC-cchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036003 165 --LINLYAECSDVEAARRIFENISE--PC-VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG 239 (558)
Q Consensus 165 --ll~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 239 (558)
+.......+..+.+.+.++.... |+ ......+...+...|++++|.+.+++..+.. +.+...+..+..++...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 11111223444555555544222 11 1223344456666777777777777766643 333445555666666666
Q ss_pred ChHHHHHHHHHHHHhCCC-Cch--hHHHHHHHHHHhcCCHHHHHHHHhcc
Q 036003 240 SLDLGKWIHEYIKKYGLD-KYV--KVNTALIDMHAKCGRLDDAVSVFDNM 286 (558)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 286 (558)
++++|..++++..+.... ++. ..|..+...+...|++++|.++|++.
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666666666666554211 111 12334455555555555555555554
No 93
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=2.5e-05 Score=80.19 Aligned_cols=350 Identities=13% Similarity=0.092 Sum_probs=207.1
Q ss_pred HHHHHHHHHhCCC--CChhHHHHHHHHhhcCCCCCCHHHHHHHHccCC-CCCccc-----HHHHHHHHhcCCCchHHHHH
Q 036003 38 KQIHAVTIKTHLQ--NDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP-EPDIVL-----FNTMARGYSRSKTPIRAIFL 109 (558)
Q Consensus 38 ~~~~~~~~~~g~~--~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~-~~~~~~-----~~~li~~~~~~g~~~~A~~~ 109 (558)
+++.+..++.+++ .|+.-.+.-+.++... +-..+..++++++. ++++.+ -|.||-.-.+. +..+..+.
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMta---dLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~Y 1042 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTA---DLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEY 1042 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhc---CCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHH
Confidence 4444555554442 3344444445555555 55666666666653 232222 23333333332 33444444
Q ss_pred HHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCC
Q 036003 110 FVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC 189 (558)
Q Consensus 110 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 189 (558)
.+++-... .| .+...+... +-+++|..+|+.. ..+....+.|+.- -+.++.|.+.-++..+|
T Consensus 1043 I~rLdnyD-a~------~ia~iai~~--~LyEEAF~ifkkf-----~~n~~A~~VLie~---i~~ldRA~efAe~~n~p- 1104 (1666)
T KOG0985|consen 1043 INRLDNYD-AP------DIAEIAIEN--QLYEEAFAIFKKF-----DMNVSAIQVLIEN---IGSLDRAYEFAERCNEP- 1104 (1666)
T ss_pred HHHhccCC-ch------hHHHHHhhh--hHHHHHHHHHHHh-----cccHHHHHHHHHH---hhhHHHHHHHHHhhCCh-
Confidence 44443221 11 122223333 5566677666553 3344444444442 35667777777766544
Q ss_pred cchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 036003 190 VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDM 269 (558)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (558)
..|..+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-.+++...++..-+|.+. +.|+-+
T Consensus 1105 -~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1105 -AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred -HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 46899999999999999998877543 367789999999999999999999999888877777665 568999
Q ss_pred HHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 036003 270 HAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYF 349 (558)
Q Consensus 270 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 349 (558)
|++.+++.+.++++. .+|......+..-|...|.++.|.-+|.. ...|..|...+...|++..|...-
T Consensus 1176 yAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred HHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988777643 45565666667777777777777666653 234556666666666666665544
Q ss_pred HHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 036003 350 YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI--KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 427 (558)
++.. +..+|..+-.+|...+.+.-|.- .+. --...-..-++..|...|-+++.+.+++..+.+...+
T Consensus 1244 RKAn-------s~ktWK~VcfaCvd~~EFrlAQi----CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAH 1312 (1666)
T KOG0985|consen 1244 RKAN-------STKTWKEVCFACVDKEEFRLAQI----CGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAH 1312 (1666)
T ss_pred hhcc-------chhHHHHHHHHHhchhhhhHHHh----cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHH
Confidence 3332 44556555555555444433211 111 1122334445566666666666666666666665555
Q ss_pred cccHHhHHHHHHhc
Q 036003 428 GGDYVILSNLCARA 441 (558)
Q Consensus 428 ~~~~~~l~~~~~~~ 441 (558)
...|.-|+..|++-
T Consensus 1313 MgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1313 MGMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHHHHHHHHhc
Confidence 55555555555544
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.83 E-value=4.7e-06 Score=92.50 Aligned_cols=321 Identities=10% Similarity=-0.028 Sum_probs=204.6
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC----CC---c-----chHHHHHHHHHHCCC
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE----PC---V-----VSYNAIITAYARSSR 205 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~---~-----~~~~~li~~~~~~g~ 205 (558)
|+.+.+...++.+.......+..........+...|++++|...++.... .+ . .....+...+...|+
T Consensus 388 g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 467 (903)
T PRK04841 388 GELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGD 467 (903)
T ss_pred CChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCC
Confidence 55555555554432111111222334455666788999999888876532 11 1 112223345667899
Q ss_pred ccHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHhCC---CC--chhHHHHHHHHHHhcCCH
Q 036003 206 PNEALSLFRELQERNLKPTD----VTMLSALSSCALLGSLDLGKWIHEYIKKYGL---DK--YVKVNTALIDMHAKCGRL 276 (558)
Q Consensus 206 ~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~ 276 (558)
+++|...+++..+.--..+. .....+...+...|++++|...+++...... .+ ....+..+...+...|++
T Consensus 468 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~ 547 (903)
T PRK04841 468 PEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFL 547 (903)
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCH
Confidence 99999999987663111121 2344556667789999999999988764321 11 123445567788899999
Q ss_pred HHHHHHHhccCCC-----------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCC--CCCC--HHHHHHHHHHHHccCC
Q 036003 277 DDAVSVFDNMSGK-----------DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ--VSPD--EITFLGLLYACSHTGL 341 (558)
Q Consensus 277 ~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~--~~~~~~ll~~~~~~g~ 341 (558)
++|...+++.... ....+..+...+...|++++|...+++..... ..+. ...+..+...+...|+
T Consensus 548 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~ 627 (903)
T PRK04841 548 QAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGD 627 (903)
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCC
Confidence 9999988765421 12234455667778899999999998876531 1122 2344455667788999
Q ss_pred hHHHHHHHHHchhhcCCCCChhHH-----HHHHHHHhhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCCH
Q 036003 342 VDEGWNYFYSMRDKYGIVPGIKHY-----GCMVDLLGRAGRLDEAYRFIDELPIK--STP----ILWRTLLSSCSSHNNL 410 (558)
Q Consensus 342 ~~~a~~~~~~~~~~~~~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~--~~~----~~~~~l~~~~~~~g~~ 410 (558)
++.|.+.+...............+ ...+..+...|+.+.|..++...... ... ..+..+..++...|++
T Consensus 628 ~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 707 (903)
T PRK04841 628 LDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQF 707 (903)
T ss_pred HHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCH
Confidence 999999988875421111111111 11224455689999999998776211 111 1234567778899999
Q ss_pred HHHHHHHHHHHccCCC------CcccHHhHHHHHHhcCChHHHHHHHHHHHhCC
Q 036003 411 GLAKQVIERIFELDDS------HGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 411 ~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
++|...+++++..... ...++..+..+|.+.|+.++|...+.+..+..
T Consensus 708 ~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 708 DEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999998875311 22356678888999999999999999887643
No 95
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.80 E-value=1.8e-06 Score=85.31 Aligned_cols=164 Identities=16% Similarity=0.228 Sum_probs=86.2
Q ss_pred HHHHhcCCHHHHHHHHhccCCCCHHh--HHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 036003 268 DMHAKCGRLDDAVSVFDNMSGKDTQA--WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345 (558)
Q Consensus 268 ~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 345 (558)
.+......|.+|+.+++.+..+++.+ |..+...|+..|+++.|.++|-+.- .++-.|..|.+.|++..|
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHH
Confidence 33444555666666666555543332 5555556666666666666654421 233445556666666666
Q ss_pred HHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC---------------------------HHHHH
Q 036003 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST---------------------------PILWR 398 (558)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------------------------~~~~~ 398 (558)
.++-.+.. |.......|-+-..-+-+.|++.+|.+++-.++ .|+ ..|..
T Consensus 811 ~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~-~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~ 886 (1636)
T KOG3616|consen 811 FKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-EPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHK 886 (1636)
T ss_pred HHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-CchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHH
Confidence 55544442 333344444444444455555555555544433 222 12333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHH
Q 036003 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452 (558)
Q Consensus 399 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 452 (558)
.+..-+-..|+...|+..|-++- -|..-+++|...+.|++|.++-+
T Consensus 887 ~f~~e~e~~g~lkaae~~flea~--------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 887 HFAKELEAEGDLKAAEEHFLEAG--------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHHHhccChhHHHHHHHhhh--------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 34444455555555555544332 35566677878888888877765
No 96
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=2.9e-06 Score=76.84 Aligned_cols=371 Identities=12% Similarity=0.070 Sum_probs=223.4
Q ss_pred CCHHHHHHHHccCCCCC---cccHHH-HHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHH
Q 036003 70 SSMEHAHLLFDRIPEPD---IVLFNT-MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145 (558)
Q Consensus 70 ~~~~~A~~~~~~~~~~~---~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~ 145 (558)
.++..|+.+++--..-+ ....+. +..++.+.|++++|+..|.-+.+. -.|+...+..|.-+..-. |.+.+|.+
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyL--g~Y~eA~~ 112 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYL--GQYIEAKS 112 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHH--HHHHHHHH
Confidence 58888988887544311 112222 345667889999999999888764 355666666666665666 88888888
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCH
Q 036003 146 LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTD 225 (558)
Q Consensus 146 ~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 225 (558)
+-... +.++.....|...-.+.++-++-..+-+.+.... .---+|....-..-.+++|+++|.+.... .|+-
T Consensus 113 ~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey 184 (557)
T KOG3785|consen 113 IAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEY 184 (557)
T ss_pred HHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chhh
Confidence 76543 2334444455566667777776666655554321 11222333333344789999999998875 3554
Q ss_pred HHHHH-HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cCCHHHH--HHHHhccC-------------
Q 036003 226 VTMLS-ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK--CGRLDDA--VSVFDNMS------------- 287 (558)
Q Consensus 226 ~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A--~~~~~~~~------------- 287 (558)
...+. +.-+|.+..-++-+.++++-..+.- +.+....|....-..+ .|+..++ .++-+...
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHN 263 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHN 263 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcC
Confidence 44444 3445667777888888877766542 2333333333322222 1222111 11111111
Q ss_pred ------------------CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHccCChHH
Q 036003 288 ------------------GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA-----CSHTGLVDE 344 (558)
Q Consensus 288 ------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-----~~~~g~~~~ 344 (558)
+.=+.+--.|+--|.+.++..+|..+.+++.- ..|-......+..+ ......++-
T Consensus 264 LVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKi 341 (557)
T KOG3785|consen 264 LVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKI 341 (557)
T ss_pred eEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 11112223345557788999999998877532 23333333333222 122233566
Q ss_pred HHHHHHHchhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036003 345 GWNYFYSMRDKYGIVPG-IKHYGCMVDLLGRAGRLDEAYRFIDELP--IKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421 (558)
Q Consensus 345 a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (558)
|.+.|+..-.. +..-| ...-.++...+.-..++++.+.+++.+. ...|...-..+..+.+..|++.+|+++|-++.
T Consensus 342 AqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is 420 (557)
T KOG3785|consen 342 AQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRIS 420 (557)
T ss_pred HHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhc
Confidence 77777776554 43333 3344566667777778899988888772 22333333457889999999999999999988
Q ss_pred ccCCCCcccHH-hHHHHHHhcCChHHHHHHHHHHH
Q 036003 422 ELDDSHGGDYV-ILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 422 ~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
..+-.+..+|. .|..+|.+.|..+-|+.++-++.
T Consensus 421 ~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 421 GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 77755556665 46788999999999988876553
No 97
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=3e-05 Score=75.35 Aligned_cols=385 Identities=13% Similarity=0.039 Sum_probs=197.7
Q ss_pred CCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHHHHHHHH--hcCCCchHHHHHHHHhHHCCCCCCcc-cHH
Q 036003 50 QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY--SRSKTPIRAIFLFVELLNSGLLPDDY-SFP 126 (558)
Q Consensus 50 ~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~ 126 (558)
+.+...+..=+-+..+. +.+++|.++.+.-...++...-.+=.+| -+.+..++|+..++ |..++.. +..
T Consensus 43 pdd~~a~~cKvValIq~---~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~ 114 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQL---DKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK-----GLDRLDDKLLE 114 (652)
T ss_pred CCcHhhHhhhHhhhhhh---hHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh-----cccccchHHHH
Confidence 33344444445555666 7777777666554321111111022333 35677777777776 2333332 333
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHH---HHHHHHH
Q 036003 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNS-NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA---IITAYAR 202 (558)
Q Consensus 127 ~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~ 202 (558)
.-...|-+. +++++|..+|+.+.+.+.+. +...-..++.+-. .-.+. +.+........+|.. ....++.
T Consensus 115 L~AQvlYrl--~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v~~v~e~syel~yN~Ac~~i~ 187 (652)
T KOG2376|consen 115 LRAQVLYRL--ERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSVPEVPEDSYELLYNTACILIE 187 (652)
T ss_pred HHHHHHHHH--hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhccCCCcchHHHHHHHHHHHHh
Confidence 334445555 77777777777777665321 1111111211111 11111 333333322334433 3445677
Q ss_pred CCCccHHHHHHHHHHHCC-------CCC------CHH-HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchh----HHH
Q 036003 203 SSRPNEALSLFRELQERN-------LKP------TDV-TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK----VNT 264 (558)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~-------~~p------~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~ 264 (558)
.|++.+|+++++.....+ -.- +.. .-..+..++-..|+.++|..++..+.+... +|.. ..|
T Consensus 188 ~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~N 266 (652)
T KOG2376|consen 188 NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVN 266 (652)
T ss_pred cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhc
Confidence 888888888888772211 011 111 112344456678888888888888887753 3322 223
Q ss_pred HHHHHHHhcCCHH-HHHHHHhccCCCCHH--------------hH-HHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHH
Q 036003 265 ALIDMHAKCGRLD-DAVSVFDNMSGKDTQ--------------AW-SAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT 328 (558)
Q Consensus 265 ~l~~~~~~~g~~~-~A~~~~~~~~~~~~~--------------~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 328 (558)
.|+.+-....-++ .++..++........ .. +.++..|.. ..+.+.++..... +..|. ..
T Consensus 267 NLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn--k~~q~r~~~a~lp--~~~p~-~~ 341 (652)
T KOG2376|consen 267 NLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN--KMDQVRELSASLP--GMSPE-SL 341 (652)
T ss_pred chhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHhCC--ccCch-HH
Confidence 2332211111111 222223222211111 11 122222222 2223333222211 12333 34
Q ss_pred HHHHHHHHHc--cCChHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHH--------hC-CCCCCHHH
Q 036003 329 FLGLLYACSH--TGLVDEGWNYFYSMRDKYGIVPG-IKHYGCMVDLLGRAGRLDEAYRFID--------EL-PIKSTPIL 396 (558)
Q Consensus 329 ~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~--------~~-~~~~~~~~ 396 (558)
+..++..+.+ ...+..+..++....+ +.+-+ ..+.-..+......|+++.|.+++. .+ ...-.+.+
T Consensus 342 ~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~ 419 (652)
T KOG2376|consen 342 FPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT 419 (652)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH
Confidence 5555554432 2357778888887765 33333 4566677788889999999999998 33 22334456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccC----CCC---cccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 397 WRTLLSSCSSHNNLGLAKQVIERIFELD----DSH---GGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 397 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
..++...+.+.++.+.|..++..++.-- +.. ..++..++..-.+.|+-++|..+++++.+.
T Consensus 420 V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 420 VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 6667777788888888888888776421 111 123334444556779999999999998773
No 98
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.77 E-value=7.5e-05 Score=74.93 Aligned_cols=369 Identities=13% Similarity=0.058 Sum_probs=228.5
Q ss_pred CChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC----CCccc-HHHHHHHHhc-CCCchHHHHHHHHhHHC--CCC--C
Q 036003 51 NDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE----PDIVL-FNTMARGYSR-SKTPIRAIFLFVELLNS--GLL--P 120 (558)
Q Consensus 51 ~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-~~~li~~~~~-~g~~~~A~~~~~~m~~~--g~~--p 120 (558)
.....|+.+...|..+ |.-..|..+++.-.. |+..+ +-..-..|.+ -|..+++++.-.+.... +.. .
T Consensus 355 ~~~e~w~~~als~saa---g~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l 431 (799)
T KOG4162|consen 355 GEHERWYQLALSYSAA---GSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHL 431 (799)
T ss_pred hhHHHHHHHHHHHHHh---ccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhh
Confidence 4457888888899999 998899999886543 33233 3333334443 46677777777666652 111 1
Q ss_pred CcccHHHHHHHHHhcC---------cccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC----
Q 036003 121 DDYSFPSLLKACACVG---------AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE---- 187 (558)
Q Consensus 121 ~~~~~~~ll~~~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---- 187 (558)
....|..+--+|.... .....++.+.+++.++.+. .|+.+.-.+.--|+..++++.|.+..++..+
T Consensus 432 ~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~ 510 (799)
T KOG4162|consen 432 KPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRG 510 (799)
T ss_pred hhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC
Confidence 2233333333332111 1234456777888877653 2333333344457778899999888877654
Q ss_pred CCcchHHHHHHHHHHCCCccHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH-------------
Q 036003 188 PCVVSYNAIITAYARSSRPNEALSLFRELQER-NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK------------- 253 (558)
Q Consensus 188 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------------- 253 (558)
.+...|..|.-.+...+++.+|+.+.+..... |. |......-+..-...++.+++......+..
T Consensus 511 ~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~ 588 (799)
T KOG4162|consen 511 DSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD 588 (799)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh
Confidence 57788999999999999999999999876543 21 111111111222223444444433322221
Q ss_pred --------hCC-------CCchhHHHHHHHHHHhcC---CHHHHHHHHhccCCCC------HHhHHHHHHHHHHCCChHH
Q 036003 254 --------YGL-------DKYVKVNTALIDMHAKCG---RLDDAVSVFDNMSGKD------TQAWSAMIVAYATHGQGHK 309 (558)
Q Consensus 254 --------~~~-------~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~ 309 (558)
.|+ .-.+.++.-+.......+ ..+..+..+.....++ ...|......+.+.+..++
T Consensus 589 ~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~ 668 (799)
T KOG4162|consen 589 EGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDE 668 (799)
T ss_pred hhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchH
Confidence 010 011222222221111111 1111111111222222 2346667778888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHH--HHH
Q 036003 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP-GIKHYGCMVDLLGRAGRLDEAYR--FID 386 (558)
Q Consensus 310 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~--~~~ 386 (558)
|...+.+.... ..-....|......+...|...+|.+.|.... .+.| ++....++..++.+.|+..-|.+ ++.
T Consensus 669 a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~ 744 (799)
T KOG4162|consen 669 ARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLS 744 (799)
T ss_pred HHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 99888887764 23345667777778888999999999998887 4455 46788899999999998887777 777
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcc
Q 036003 387 EL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429 (558)
Q Consensus 387 ~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 429 (558)
++ ...| +...|..+...+.+.|+.+.|.+.|.-+.++++.+|.
T Consensus 745 dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 745 DALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 76 5555 6789999999999999999999999999999876654
No 99
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.77 E-value=9.1e-07 Score=93.31 Aligned_cols=201 Identities=12% Similarity=0.107 Sum_probs=168.4
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHH
Q 036003 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK--------DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT 328 (558)
Q Consensus 257 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 328 (558)
|-....|-..|......+++++|++++++.... -...|.+++..-...|.-+...++|+++.+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 344667777888888999999999999887532 3446888888877888888899999999884 222356
Q ss_pred HHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 036003 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKSTPILWRTLLSSC 404 (558)
Q Consensus 329 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~ 404 (558)
|..|...|.+.+.+++|.++|+.|.++++ -....|..++..+.+..+-+.|..++.+. +.+.......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999766 56778999999999999999999999886 3333455566666777
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 036003 405 SSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLK 461 (558)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 461 (558)
.+.|+.+++..+|+..+...|.....|+.+++.-.+.|+.+.++.+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 889999999999999999999999999999999999999999999999999887764
No 100
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=1.1e-06 Score=87.03 Aligned_cols=226 Identities=15% Similarity=0.132 Sum_probs=178.1
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036003 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335 (558)
Q Consensus 256 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 335 (558)
++|-...-..+...+.+.|-...|..+|+++ ..|.-.|.+|+..|+..+|..+..+..+ -+|+...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4555566677889999999999999999975 5688889999999999999999998887 47899999999998
Q ss_pred HHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 036003 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLA 413 (558)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a 413 (558)
.....-+++|.++.+....+ .-..+.....+.++++++.+.|+.- ...| ...+|..+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 88888899999998877653 2223333344578999999999875 4445 467899999999999999999
Q ss_pred HHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEEECCEEEEEeeCCCCCCChHHHHHH
Q 036003 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKA 493 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (558)
.+.|.+...++|++...|+.+..+|.+.|+-.+|...+++..+-+.. .|-.+.+.+.-.+ +-+..+++.++
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-----~w~iWENymlvsv----dvge~eda~~A 609 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-----HWQIWENYMLVSV----DVGEFEDAIKA 609 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-----CCeeeechhhhhh----hcccHHHHHHH
Confidence 99999999999999999999999999999999999999999887655 3666666543322 33556677766
Q ss_pred HHHHHHHHHHcCc
Q 036003 494 LDELVKELKMVGY 506 (558)
Q Consensus 494 ~~~l~~~m~~~g~ 506 (558)
..++ ..|+..+-
T Consensus 610 ~~rl-l~~~~~~~ 621 (777)
T KOG1128|consen 610 YHRL-LDLRKKYK 621 (777)
T ss_pred HHHH-HHhhhhcc
Confidence 6554 34444444
No 101
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.68 E-value=5.8e-05 Score=75.03 Aligned_cols=259 Identities=17% Similarity=0.193 Sum_probs=167.1
Q ss_pred HHHHHhCCChHHHHHHHhccCCCCcc--hHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 036003 166 INLYAECSDVEAARRIFENISEPCVV--SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243 (558)
Q Consensus 166 l~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 243 (558)
+.+..+...|.+|+.+++.+...++. -|..+..-|...|+++.|.++|.+.- .++-.|..|.+.|+|+.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 34455667778888888877764433 36667778888888888888886532 24556677888888888
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCC
Q 036003 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323 (558)
Q Consensus 244 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 323 (558)
|.++-++. .|.+.....|-+-..-+-+.|++.+|+++|-.+..|+. .|..|-+.|..+..+++.++-.
T Consensus 810 a~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h----- 877 (1636)
T KOG3616|consen 810 AFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHH----- 877 (1636)
T ss_pred HHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhC-----
Confidence 87765543 33444555666556666778888888888888777754 4667778888888887776643
Q ss_pred CCH--HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH-----HH
Q 036003 324 PDE--ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP-----IL 396 (558)
Q Consensus 324 p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~ 396 (558)
|+. .|...+..-+-..|++..|...|-+.. -|.+-+++|-..+.+++|.++-+.-+- .+. ..
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg-~n~~k~v~fl 946 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGG-ANAEKHVAFL 946 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhcccc-ccHHHHHHHH
Confidence 332 456666777778888888887776554 255667777777778887777655421 111 11
Q ss_pred H-------------------HHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 397 W-------------------RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 397 ~-------------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
| ..-+...+..+.++-|..+-+-..+.. .+..+..+..-+...|++++|-+-+-+..+.
T Consensus 947 waksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k--~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 947 WAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK--MGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred HHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc--CccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 1 111222233444555555444433322 2345667777788999999998877766654
Q ss_pred C
Q 036003 458 G 458 (558)
Q Consensus 458 g 458 (558)
+
T Consensus 1025 n 1025 (1636)
T KOG3616|consen 1025 N 1025 (1636)
T ss_pred c
Confidence 3
No 102
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=5.6e-05 Score=72.77 Aligned_cols=403 Identities=12% Similarity=0.023 Sum_probs=242.5
Q ss_pred cCCchH-HHHHHHHHHhCCCC-ChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC--CC-cccHHHHHHHHhcCCCchHH
Q 036003 32 TSFRGL-KQIHAVTIKTHLQN-DLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE--PD-IVLFNTMARGYSRSKTPIRA 106 (558)
Q Consensus 32 ~~~~~~-~~~~~~~~~~g~~~-~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A 106 (558)
...+++ ..|.......+++| |...|+.-..+|++. |++++|.+--.+..+ |+ ...|+-...++.-.|++++|
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~---~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASL---GSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHH---hhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 344566 66666666666654 567888889999999 999999887766554 43 35689999999999999999
Q ss_pred HHHHHHhHHCCCCCC-cccHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHh----------
Q 036003 107 IFLFVELLNSGLLPD-DYSFPSLLKACACVGA-EALEEGKQLHCFAIKLG---LNSNLYVCTTLINLYAE---------- 171 (558)
Q Consensus 107 ~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~-~~~~~a~~~~~~~~~~g---~~~~~~~~~~ll~~~~~---------- 171 (558)
+..|.+-++. .|+ ...+.-+..+...... ++.-..-.++..+...- .......|..++..+-+
T Consensus 90 ~~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 90 ILAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 9999998775 343 3444444444411100 00000000111110000 00011122222222211
Q ss_pred CCChHHHHHHHhccC----------------CC---------C-------------cchHHHHHHHHHHCCCccHHHHHH
Q 036003 172 CSDVEAARRIFENIS----------------EP---------C-------------VVSYNAIITAYARSSRPNEALSLF 213 (558)
Q Consensus 172 ~g~~~~A~~~~~~~~----------------~~---------~-------------~~~~~~li~~~~~~g~~~~A~~~~ 213 (558)
-.++..|...+.... .| . ..-+..+.+...+..++..|++-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 111222222221110 01 0 012445667777888999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc------hhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 036003 214 RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY------VKVNTALIDMHAKCGRLDDAVSVFDNMS 287 (558)
Q Consensus 214 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 287 (558)
....+.. -+..-++....++...|.+...........+.|...- ...+..+..+|.+.++++.|+..|.+..
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 8887753 4445556666778888888777766666655542211 1122234557888889999999998854
Q ss_pred CC--CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhH
Q 036003 288 GK--DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364 (558)
Q Consensus 288 ~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 364 (558)
.. +.. ...+....++++...+...- +.|.. .-...-...+.+.|++..|...|.++... -+.|...
T Consensus 326 te~Rt~~-------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~l 394 (539)
T KOG0548|consen 326 TEHRTPD-------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARL 394 (539)
T ss_pred hhhcCHH-------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHH
Confidence 32 211 12233345555555555444 33443 22223356678899999999999998873 4667889
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcC
Q 036003 365 YGCMVDLLGRAGRLDEAYRFIDEL-PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442 (558)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 442 (558)
|..-.-+|.+.|.+..|++=.+.. ...|+ ...|.-=..++....+++.|.+.|.+.++.+|.+......+.+++....
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~ 474 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQR 474 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhh
Confidence 999999999999999998876665 33443 3344444556666779999999999999999988766666666555433
Q ss_pred ChHHHHHHHH
Q 036003 443 RWEDVDYLRK 452 (558)
Q Consensus 443 ~~~~A~~~~~ 452 (558)
....-.++.+
T Consensus 475 ~~~~~ee~~~ 484 (539)
T KOG0548|consen 475 GDETPEETKR 484 (539)
T ss_pred cCCCHHHHHH
Confidence 3333344443
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.67 E-value=1.5e-06 Score=79.39 Aligned_cols=182 Identities=10% Similarity=0.031 Sum_probs=110.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CH---HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCC-CCH-HHHH
Q 036003 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DT---QAWSAMIVAYATHGQGHKSILMFEEMMKAQVS-PDE-ITFL 330 (558)
Q Consensus 259 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~-~~~~ 330 (558)
....+-.++..+.+.|++++|...|+++... +. .++..+..++.+.|++++|+..++++.+.... |.. .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3444555666677777777777777765432 11 34566667777777777777777777663211 111 1333
Q ss_pred HHHHHHHcc--------CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036003 331 GLLYACSHT--------GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402 (558)
Q Consensus 331 ~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 402 (558)
.+..++... |+.++|.+.|+.+... .+-+...+..+..... ..... ......+..
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~a~ 174 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYVAR 174 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHHHH
Confidence 344444433 5566666666666642 1112222222111100 00000 001124566
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCCCc---ccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 403 SCSSHNNLGLAKQVIERIFELDDSHG---GDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 403 ~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
.+...|++++|...++++++..|+++ ..+..++.+|.+.|++++|..+++.+...
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 78899999999999999999876653 67889999999999999999999988754
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=4e-06 Score=74.24 Aligned_cols=312 Identities=13% Similarity=0.085 Sum_probs=163.1
Q ss_pred CCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC--CCcchH
Q 036003 116 SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE--PCVVSY 193 (558)
Q Consensus 116 ~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~ 193 (558)
.|+.....-+.+++..+.+. .+++.+++++..-.+.. +.+....+.|..+|.+..++..|-..++++.. |...-|
T Consensus 4 ~g~~i~EGeftaviy~lI~d--~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qY 80 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRD--ARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQY 80 (459)
T ss_pred ccccCCCCchHHHHHHHHHH--hhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH
Confidence 34444445567777777776 77777777776665543 23556666677777777777777777777654 333333
Q ss_pred HH-HHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 036003 194 NA-IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS--SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270 (558)
Q Consensus 194 ~~-li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (558)
.. -...+-+.+.+..|+++...|... |+...-..-+. ..-..+++..+..+.++.... -+..+.+......
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCll 154 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLL 154 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchhee
Confidence 21 234455667777777777666532 22111111111 112334444444444433221 1222223333334
Q ss_pred HhcCCHHHHHHHHhccCCC----CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH
Q 036003 271 AKCGRLDDAVSVFDNMSGK----DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346 (558)
Q Consensus 271 ~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 346 (558)
.+.|+++.|.+-|+...+- ....||..+ +..+.|+++.|++...+++++|++--+. ++ .|...+..
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-lg--------IGm~tegi 224 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-LG--------IGMTTEGI 224 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-cC--------ccceeccC
Confidence 4455555555555444321 223333322 2233344555555555555544431110 00 00000000
Q ss_pred HHHHHchhhcCCCCC-------hhHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036003 347 NYFYSMRDKYGIVPG-------IKHYGCMVDLLGRAGRLDEAYRFIDELP----IKSTPILWRTLLSSCSSHNNLGLAKQ 415 (558)
Q Consensus 347 ~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~ 415 (558)
. .+.+ | .|- +..+|.-...+.+.|+++.|.+.+.+|| ...|++|...+.-.- ..+++.+..+
T Consensus 225 D-vrsv----g-Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~ 297 (459)
T KOG4340|consen 225 D-VRSV----G-NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFE 297 (459)
T ss_pred c-hhcc----c-chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHH
Confidence 0 0000 0 000 1122333334567899999999999994 234677776553221 2355666777
Q ss_pred HHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHH
Q 036003 416 VIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKL 453 (558)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 453 (558)
-+.-++++.|-.+.++..++-.|++..-++-|.+++-+
T Consensus 298 KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 298 KLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 77777888887788999999999998888888887754
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.64 E-value=3e-06 Score=74.33 Aligned_cols=148 Identities=8% Similarity=0.075 Sum_probs=109.7
Q ss_pred HHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCC
Q 036003 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377 (558)
Q Consensus 298 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 377 (558)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..|...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3456777777665444322211 11 012235667777777777765 445678889999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHH
Q 036003 378 LDEAYRFIDEL-PIKS-TPILWRTLLSSC-SSHNN--LGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452 (558)
Q Consensus 378 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 452 (558)
+++|...|++. ...| +...+..+..++ ...|+ .++|.++++++++.+|.++.++..++..+.+.|++++|...|+
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999887 4444 567777777764 66676 5899999999999999999999999999999999999999999
Q ss_pred HHHhCCC
Q 036003 453 LMKDRGV 459 (558)
Q Consensus 453 ~m~~~g~ 459 (558)
++.+...
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9877533
No 106
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.62 E-value=1.8e-05 Score=81.25 Aligned_cols=176 Identities=16% Similarity=0.106 Sum_probs=121.1
Q ss_pred HHHHHHHHHhCCCCCh-hHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHh
Q 036003 38 KQIHAVTIKTHLQNDL-NVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVEL 113 (558)
Q Consensus 38 ~~~~~~~~~~g~~~~~-~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 113 (558)
..++..+....+.++. ..|..|-..|+.. .+...|.+-|++..+ .|..++......|++..+++.|..+.-..
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~---~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDS---DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 4455555555566664 5777788888888 788889999988766 46677888899999999999998873322
Q ss_pred HHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcch-
Q 036003 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS- 192 (558)
Q Consensus 114 ~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~- 192 (558)
-+.. +.-...++.+-.+.....+++...+..-|+..++.. +-|...|..|+.+|.++|++..|.++|.+...-++..
T Consensus 553 ~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 553 AQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred hhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 2211 111222333333333333388888888888888765 4578889999999999999999999998887633332
Q ss_pred HHHH--HHHHHHCCCccHHHHHHHHHHH
Q 036003 193 YNAI--ITAYARSSRPNEALSLFRELQE 218 (558)
Q Consensus 193 ~~~l--i~~~~~~g~~~~A~~~~~~m~~ 218 (558)
|... ...-+..|.+.+|+..+.....
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3222 2334567889998888877654
No 107
>PF12854 PPR_1: PPR repeat
Probab=98.61 E-value=6.7e-08 Score=57.06 Aligned_cols=33 Identities=24% Similarity=0.500 Sum_probs=26.1
Q ss_pred CCCChHHHHHHHHHHHHhCCChHHHHHHHhccC
Q 036003 154 GLNSNLYVCTTLINLYAECSDVEAARRIFENIS 186 (558)
Q Consensus 154 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 186 (558)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888887774
No 108
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.57 E-value=0.00014 Score=66.05 Aligned_cols=331 Identities=13% Similarity=0.087 Sum_probs=203.5
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHH---HHHhcCcccHHHHHHHHHHHHHhCCCChHHHH-HHH
Q 036003 90 FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK---ACACVGAEALEEGKQLHCFAIKLGLNSNLYVC-TTL 165 (558)
Q Consensus 90 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~---~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~l 165 (558)
.--+...+...|++..|+.-|....+- |+..|.++.+ .|... |+-..|+.-+...++. .||-..- ---
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAm--Gksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAM--GKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhh--cCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 344667777788888888888777652 4455555543 45555 6666677777777664 4553221 122
Q ss_pred HHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 036003 166 INLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245 (558)
Q Consensus 166 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 245 (558)
...+.+.|.++.|..-|+.+.+.+.. .|...+|..-+....+ .......+..+...|+...|+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQE------HWVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHHH------HHHHHHHHHHHhcCCchhhHH
Confidence 34566778888888777776652221 0111111111100000 011222334445567777777
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc---CCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCC
Q 036003 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM---SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322 (558)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 322 (558)
.....+.+.. +-+...|..-..+|...|++..|+.-++.. ...+...+--+-..+...|+.+.++...++-.+ +
T Consensus 176 ~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--l 252 (504)
T KOG0624|consen 176 EMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--L 252 (504)
T ss_pred HHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--c
Confidence 7777776643 335566666677778888887777655544 344666666667777777888888777777776 5
Q ss_pred CCCHHH----HHHH---------HHHHHccCChHHHHHHHHHchhhcCCC-C--ChhHHHHHHHHHhhcCCHHHHHHHHH
Q 036003 323 SPDEIT----FLGL---------LYACSHTGLVDEGWNYFYSMRDKYGIV-P--GIKHYGCMVDLLGRAGRLDEAYRFID 386 (558)
Q Consensus 323 ~p~~~~----~~~l---------l~~~~~~g~~~~a~~~~~~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~ 386 (558)
.||... |..| +......+++.++.+..+...+. ... + ....+..+-.++...|++.+|++...
T Consensus 253 dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~-ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 253 DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN-EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 566532 2111 11234567777788777777753 211 1 12345566778888999999999988
Q ss_pred hC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036003 387 EL-PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 387 ~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (558)
+. ...|+ +.++..-..+|.-...++.|+.-|+++.+.++++..+- .| .+.|.++.+...+++.
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r---------eG-le~Akrlkkqs~kRDY 396 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR---------EG-LERAKRLKKQSGKRDY 396 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH---------HH-HHHHHHHHHHhccchH
Confidence 86 55565 67888888899999999999999999999998874332 22 3555555555544433
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.55 E-value=2.5e-06 Score=70.75 Aligned_cols=108 Identities=11% Similarity=-0.029 Sum_probs=67.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 036003 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSS 406 (558)
Q Consensus 329 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 406 (558)
+..+...+...|++++|...|+.... --+.+...|..+..++.+.|++++|...|++. ...| +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 33445556666777777777766654 22335566666666677777777777777665 2233 45666666667777
Q ss_pred cCCHHHHHHHHHHHHccCCCCcccHHhHHHHH
Q 036003 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438 (558)
Q Consensus 407 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 438 (558)
.|++++|...|+++++..|.++..+.....+.
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 77777777777777777777666665544443
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=1.3e-05 Score=79.65 Aligned_cols=217 Identities=12% Similarity=0.096 Sum_probs=176.3
Q ss_pred CCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036003 154 GLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233 (558)
Q Consensus 154 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 233 (558)
+++|--..-..+...+...|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+-.+. +||...|-.+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 34666666777888999999999999999986 46777899999999999999999888773 789999988888
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHH
Q 036003 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKS 310 (558)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a 310 (558)
......-+++|.++.+..-.. .-..+.....+.++++++.+.|+.-.+. -..+|-....+..+.+++..|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 877777788888887765432 1122333344578999999999875543 567888888899999999999
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 311 ILMFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 311 ~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
.+.|..-.. ..||. ..|+.+-.+|.+.++..+|...+.+..+- + .-+...|...+....+.|.+++|.+.+.++
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999998887 56765 68999999999999999999999999873 5 556677888888889999999999999887
No 111
>PF12854 PPR_1: PPR repeat
Probab=98.52 E-value=1.7e-07 Score=55.30 Aligned_cols=32 Identities=38% Similarity=0.758 Sum_probs=17.5
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 357 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.51 E-value=3e-05 Score=82.39 Aligned_cols=224 Identities=11% Similarity=0.167 Sum_probs=161.0
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHh-CCC---CchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-HHhHHHH
Q 036003 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKY-GLD---KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-D-TQAWSAM 297 (558)
Q Consensus 224 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~l 297 (558)
....|..-|....+.++.++|+++.+++... ++. .-..+|.++++.-..-|.-+...++|+++.+- | ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4456667777777888888888888887653 221 12346677777777777778888888888754 3 3457888
Q ss_pred HHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC--ChhHHHHHHHHHhhc
Q 036003 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP--GIKHYGCMVDLLGRA 375 (558)
Q Consensus 298 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~ 375 (558)
...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.+..+ .++. ......-.+..-.+.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK--SLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh--hcchhhhHHHHHHHHHHHhhc
Confidence 88899999999999999999875 334556788888888888888899999988886 3332 345555666777788
Q ss_pred CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CCCcc-cHHhHHHHHHhcCChHHHHHH
Q 036003 376 GRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD--DSHGG-DYVILSNLCARAGRWEDVDYL 450 (558)
Q Consensus 376 g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~-~~~~l~~~~~~~g~~~~A~~~ 450 (558)
|+.+++..+|+.. ..+.....|+.+++.-.++|+.+.+..+|++++.+. |.... .|.-++..-...|+-+.+..+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 9999999999887 222355789999999999999999999999998877 22222 344555544455554444433
No 113
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=2.7e-05 Score=75.51 Aligned_cols=245 Identities=15% Similarity=0.137 Sum_probs=168.7
Q ss_pred HHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHHCCCcc
Q 036003 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE---PCVVSYNAIITAYARSSRPN 207 (558)
Q Consensus 131 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 207 (558)
+|....+|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHH
Confidence 333333488999999999888875 55788898888888888888888888888876 35556677777888889888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-----------HHHhccCChHHHHHHHHHH-HHhCCCCchhHHHHHHHHHHhcCC
Q 036003 208 EALSLFRELQERNLKPTDVTMLSAL-----------SSCALLGSLDLGKWIHEYI-KKYGLDKYVKVNTALIDMHAKCGR 275 (558)
Q Consensus 208 ~A~~~~~~m~~~~~~p~~~~~~~ll-----------~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~ 275 (558)
.|+..|+..+... |. |..+. ..+.....+....++|-.+ ...+..+|..++..|.-.|--.|+
T Consensus 371 ~Al~~L~~Wi~~~--p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNK--PK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhC--cc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 9999888875542 11 00000 1111122233444444444 445555788888889888999999
Q ss_pred HHHHHHHHhccCC--C-CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHH
Q 036003 276 LDDAVSVFDNMSG--K-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYS 351 (558)
Q Consensus 276 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~ 351 (558)
+++|...|+.... | |...||.|...++...+..+|+..|++.++ ++|+- .....|.-+|...|.+++|...|-.
T Consensus 446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 9999999988753 3 778899999999999999999999999988 67775 3344555578889999998888766
Q ss_pred chhhcC--------CCCChhHHHHHHHHHhhcCCHHHHHH
Q 036003 352 MRDKYG--------IVPGIKHYGCMVDLLGRAGRLDEAYR 383 (558)
Q Consensus 352 ~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~ 383 (558)
...-.. ..++...|..|=.++.-.++.|-+.+
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 553210 11123456555555555555554433
No 114
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.50 E-value=2.7e-06 Score=70.60 Aligned_cols=107 Identities=10% Similarity=-0.097 Sum_probs=91.5
Q ss_pred HHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 036003 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424 (558)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 424 (558)
.++++..+ +.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++++.+
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 44555543 3344 4556788899999999999999987 4444 67889999999999999999999999999999
Q ss_pred CCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCC
Q 036003 425 DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 425 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
|.++.++..++.++...|++++|...|++..+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987744
No 115
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=0.00085 Score=69.49 Aligned_cols=340 Identities=11% Similarity=0.057 Sum_probs=233.8
Q ss_pred HHhccCCchHHHHHHHHHHhCCCCCh-----hHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHHHHHHHHhcCCC
Q 036003 28 LPRCTSFRGLKQIHAVTIKTHLQNDL-----NVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKT 102 (558)
Q Consensus 28 l~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 102 (558)
.+++...+-.-++.+.+.+.-+.|++ ...|.||-.-.+. +.....+..+++..-|.. .+......++-
T Consensus 991 VkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika----d~trVm~YI~rLdnyDa~---~ia~iai~~~L 1063 (1666)
T KOG0985|consen 991 VKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA----DRTRVMEYINRLDNYDAP---DIAEIAIENQL 1063 (1666)
T ss_pred HHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc----ChHHHHHHHHHhccCCch---hHHHHHhhhhH
Confidence 44443333334555555554455554 4555566555554 444555555555443322 23455566777
Q ss_pred chHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHH
Q 036003 103 PIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF 182 (558)
Q Consensus 103 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 182 (558)
+++|..+|++.- .+....+.|+.-. ++++.|.++-++.. .+.+|..+..+-.+.|.+.+|.+-|
T Consensus 1064 yEEAF~ifkkf~-----~n~~A~~VLie~i-----~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1064 YEEAFAIFKKFD-----MNVSAIQVLIENI-----GSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred HHHHHHHHHHhc-----ccHHHHHHHHHHh-----hhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHH
Confidence 899999998753 3555666666655 77888887766542 4678999999999999999999888
Q ss_pred hccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH
Q 036003 183 ENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262 (558)
Q Consensus 183 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 262 (558)
=+. .|+..|...+....+.|.+++-.+.+....+..-.|... ..++-+|++.+++.+-+.++ ..||...
T Consensus 1128 ika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~ 1196 (1666)
T KOG0985|consen 1128 IKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVAN 1196 (1666)
T ss_pred Hhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchh
Confidence 554 577789999999999999999999998777776666554 46788999999987766654 3577777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 036003 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342 (558)
Q Consensus 263 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 342 (558)
...+.+-+...|.++.|.-+|.. +..|..|...+...|++..|...-++. .+..||..+-.+|...+.+
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~-----vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSN-----VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEF 1265 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhh
Confidence 78889999999999999888774 456888888899999999888776653 2567888888888887776
Q ss_pred HHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036003 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIER 419 (558)
Q Consensus 343 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 419 (558)
.-|. |.. .++.....-..-|+..|...|.+++-+.+++.. +.. .....|+-|.-.|++- ++++..+.++-
T Consensus 1266 rlAQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~L 1337 (1666)
T KOG0985|consen 1266 RLAQ-----ICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKL 1337 (1666)
T ss_pred hHHH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 5443 221 123345556777888888899999888888875 322 2344555555555443 33333333333
No 116
>PLN02789 farnesyltranstransferase
Probab=98.50 E-value=3.7e-05 Score=72.58 Aligned_cols=144 Identities=10% Similarity=0.072 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhc---CC----HHHH
Q 036003 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA---GR----LDEA 381 (558)
Q Consensus 309 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~----~~~A 381 (558)
+++.+++++.+... -|...|....-++...|+++++++.+.++.+. -+.+...|+.....+.+. |. .+++
T Consensus 126 ~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 126 KELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 34444444444221 13344444444444445555555555555432 122233333333322222 11 2344
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcC-------------
Q 036003 382 YRFIDEL-PIKS-TPILWRTLLSSCSSH----NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG------------- 442 (558)
Q Consensus 382 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------- 442 (558)
.++..++ ...| |...|+.+...+... ++..+|.+.+.++.+.+|.++.++..|++.|+...
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~ 282 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTL 282 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence 4444333 3333 456676666666552 34566778888877777887788888888887632
Q ss_pred -----ChHHHHHHHHHHH
Q 036003 443 -----RWEDVDYLRKLMK 455 (558)
Q Consensus 443 -----~~~~A~~~~~~m~ 455 (558)
..++|.++++.+.
T Consensus 283 ~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 283 AEELSDSTLAQAVCSELE 300 (320)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 2366888888773
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.46 E-value=2.2e-05 Score=68.90 Aligned_cols=155 Identities=9% Similarity=0.099 Sum_probs=114.6
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH
Q 036003 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346 (558)
Q Consensus 267 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 346 (558)
+..|...|+++.+....+.+..+. ..|...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777788777655543332221 01223566778888888877743 346778888889999999999999
Q ss_pred HHHHHchhhcCCCCChhHHHHHHHHH-hhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036003 347 NYFYSMRDKYGIVPGIKHYGCMVDLL-GRAGR--LDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIF 421 (558)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (558)
..|++..+ -.+.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|...|++++
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998886 3344677888888864 67777 58999999987 4344 66788889999999999999999999999
Q ss_pred ccCCCCcccHH
Q 036003 422 ELDDSHGGDYV 432 (558)
Q Consensus 422 ~~~~~~~~~~~ 432 (558)
+..|++..-+.
T Consensus 172 ~l~~~~~~r~~ 182 (198)
T PRK10370 172 DLNSPRVNRTQ 182 (198)
T ss_pred hhCCCCccHHH
Confidence 99988765443
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.00018 Score=63.24 Aligned_cols=154 Identities=12% Similarity=0.086 Sum_probs=75.9
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCh
Q 036003 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH----TGLV 342 (558)
Q Consensus 267 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~ 342 (558)
...|+..|++++|++.......-+... .=+..+.+..+++-|.+.+++|.+- -+..|.+.|..++.+ .+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~A--l~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAA--LNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhh
Confidence 344666666666666665522222222 2233344555566666666666552 144555555544432 2345
Q ss_pred HHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 036003 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHNNL-GLAKQVIER 419 (558)
Q Consensus 343 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 419 (558)
.+|.-+|+++.+ ..+|+..+.+-...++...|++++|..++++. +...++.+...++..-...|.. +-..+.+.+
T Consensus 190 qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 556666666654 34455555555555555556666666555554 2223444444444444444433 223344444
Q ss_pred HHccCCCC
Q 036003 420 IFELDDSH 427 (558)
Q Consensus 420 ~~~~~~~~ 427 (558)
.....|.+
T Consensus 268 Lk~~~p~h 275 (299)
T KOG3081|consen 268 LKLSHPEH 275 (299)
T ss_pred HHhcCCcc
Confidence 44444443
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.44 E-value=5.3e-05 Score=79.75 Aligned_cols=233 Identities=11% Similarity=0.050 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHhccCC--CCc-chHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036003 158 NLYVCTTLINLYAECSDVEAARRIFENISE--PCV-VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSS 234 (558)
Q Consensus 158 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 234 (558)
+...+..|+..|...+++++|.++.+...+ |+. ..|..+...+.+.++..++..+ . ++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--N---------------LIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--h---------------hhhh
Confidence 345556666666666666666666664443 322 2233333345555554443333 1 1222
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHH
Q 036003 235 CALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSI 311 (558)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~ 311 (558)
.....++.....+...+.+.+ .+...+..+..+|-+.|+.++|.++++++.+- |+.+.|.+...|+.. +.++|+
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 222223323333333333321 22224444556666666666666666655432 455556666666655 666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 036003 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIK 391 (558)
Q Consensus 312 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 391 (558)
.++.+.... +...+++..+.++|.++.. ..+.+...+..+.+..... .+..
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~------------~~~~ 220 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGH------------REFT 220 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhh------------hccc
Confidence 666555442 3344455566666666654 2222222222222221111 0111
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHH
Q 036003 392 STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439 (558)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 439 (558)
.-..++..+-..|...++++++..+++.+++.+|.|..+..-++.+|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 223344445555666666666666666666666666666666666554
No 120
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.43 E-value=0.0021 Score=62.27 Aligned_cols=158 Identities=10% Similarity=0.092 Sum_probs=101.9
Q ss_pred HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 036003 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370 (558)
Q Consensus 292 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 370 (558)
.+|-..+..-.+..-...|..+|.+..+.+..+ .+..+++++.-+| .++...|.++|+.-.+++| .+..--...++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 356666666667777777888888888777666 5566666666555 4667778888877776433 33344456677
Q ss_pred HHhhcCCHHHHHHHHHhC-C--CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC----cccHHhHHHHHHhc
Q 036003 371 LLGRAGRLDEAYRFIDEL-P--IKST--PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH----GGDYVILSNLCARA 441 (558)
Q Consensus 371 ~~~~~g~~~~A~~~~~~~-~--~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 441 (558)
-+...++-..|..+|++. + ..++ ...|..++.--...|+...+.++-++....-|.+ ...-..+++-|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 777777777788888776 2 2333 3678888887788888888887777766544411 12344556666666
Q ss_pred CChHHHHHHHH
Q 036003 442 GRWEDVDYLRK 452 (558)
Q Consensus 442 g~~~~A~~~~~ 452 (558)
+.+..-..-++
T Consensus 524 d~~~c~~~elk 534 (656)
T KOG1914|consen 524 DLYPCSLDELK 534 (656)
T ss_pred ccccccHHHHH
Confidence 65544433333
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.42 E-value=3.5e-05 Score=67.54 Aligned_cols=155 Identities=14% Similarity=0.108 Sum_probs=112.0
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh
Q 036003 295 SAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374 (558)
Q Consensus 295 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 374 (558)
..+-..+...|+-+....+....... ..-|.......+....+.|++..|...+++... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44555666667777766666664432 112334444577777788888888888888875 667778888888888888
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHH
Q 036003 375 AGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452 (558)
Q Consensus 375 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 452 (558)
.|+++.|..-|.+. ...| ++...+.+.-.+.-.|+.+.|..++.......+.+..+-..|..+....|++++|.++..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 88888887777765 3333 456777777788888888888888888888777777777888888888888888877754
No 122
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=7.5e-05 Score=75.23 Aligned_cols=76 Identities=8% Similarity=0.090 Sum_probs=48.6
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcC
Q 036003 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376 (558)
Q Consensus 297 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 376 (558)
...-+-..|+.+.|+.+|....+ |-++++..|-.|+.++|-++-++-. |....-.|.+.|...|
T Consensus 918 WgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg-------d~AAcYhlaR~YEn~g 981 (1416)
T KOG3617|consen 918 WGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG-------DKAACYHLARMYENDG 981 (1416)
T ss_pred HHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc-------cHHHHHHHHHHhhhhH
Confidence 34444456667777776665543 4455556666777777776654432 4445556777888888
Q ss_pred CHHHHHHHHHhC
Q 036003 377 RLDEAYRFIDEL 388 (558)
Q Consensus 377 ~~~~A~~~~~~~ 388 (558)
++.+|..+|.+.
T Consensus 982 ~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 982 DVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHHHH
Confidence 888888887765
No 123
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.41 E-value=2.6e-05 Score=71.30 Aligned_cols=182 Identities=10% Similarity=-0.008 Sum_probs=127.7
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CH---HhH
Q 036003 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD-K-YVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DT---QAW 294 (558)
Q Consensus 223 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~ 294 (558)
.....+..+...+...|+++.|...++++...... + ....+..+..+|.+.|++++|...|+.+.+. +. .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35567778888899999999999999999876422 1 1245677889999999999999999998643 22 245
Q ss_pred HHHHHHHHHC--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHH
Q 036003 295 SAMIVAYATH--------GQGHKSILMFEEMMKAQVSPDEI-TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY 365 (558)
Q Consensus 295 ~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 365 (558)
..+..++.+. |++++|.+.|+++.+. .|+.. ....+... .. .. .... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~------~~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LR------NRLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HH------HHHH---------HHH
Confidence 6666666655 7789999999999874 45432 22221111 00 00 0000 112
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 036003 366 GCMVDLLGRAGRLDEAYRFIDEL----PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425 (558)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 425 (558)
..+...|.+.|++++|...+++. +..| ....+..+..++...|++++|..+++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 25667788999999999998887 2223 346788899999999999999998888776554
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.39 E-value=6.8e-05 Score=78.15 Aligned_cols=126 Identities=12% Similarity=0.047 Sum_probs=57.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 036003 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSG--K-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD-EITFLGLLY 334 (558)
Q Consensus 259 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~ 334 (558)
+...+-.|..+..+.|++++|+.+++...+ | +...+..++..+.+.+++++|+..+++.... .|+ ......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHH
Confidence 344444444555555555555555554432 1 3334444444555555555555555554442 222 233333444
Q ss_pred HHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
++.+.|++++|..+|+++.. ..+-+...+..+..++-+.|+.++|...|++.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44445555555555555543 11222344444444455555555555555444
No 125
>PLN02789 farnesyltranstransferase
Probab=98.39 E-value=0.00032 Score=66.33 Aligned_cols=202 Identities=14% Similarity=0.108 Sum_probs=121.1
Q ss_pred HHHHCCCccHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 036003 199 AYARSSRPNEALSLFRELQERNLKPTD-VTMLSALSSCALLG-SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276 (558)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 276 (558)
.+...++.++|+.++.++++. .|+. ..|+..-.++...| ++++++..++++.+.. +.+..+|+....++.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 345566777777777777664 3433 34444444444555 4677777777777654 33344555444444555542
Q ss_pred --HHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CCh----HH
Q 036003 277 --DDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT---GLV----DE 344 (558)
Q Consensus 277 --~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~~----~~ 344 (558)
+++..+++.+.+ +|..+|+...-++...|+++++++.++++++.+.. |...|+.....+.+. |.. ++
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 556666666543 36777887777777888888888888888876543 444555444444333 222 35
Q ss_pred HHHHHHHchhhcCCCCChhHHHHHHHHHhhc----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 036003 345 GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA----GRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSS 406 (558)
Q Consensus 345 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 406 (558)
..++..++.. ..+-|...|+.+...+... ++..+|.+++.+. ...| +......|+..|+.
T Consensus 202 el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 5666655554 3344667777777777662 3445677777765 3233 45666777777765
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.37 E-value=4e-05 Score=79.85 Aligned_cols=212 Identities=9% Similarity=0.015 Sum_probs=149.6
Q ss_pred CHHHHHHHHHHHhccCChHHH-HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHH
Q 036003 224 TDVTMLSALSSCALLGSLDLG-KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIV 299 (558)
Q Consensus 224 ~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 299 (558)
++.....+=.+.+..|.-++| .+++.++.+ ++....+.....+++.-..... ..++..+-.|..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~ 94 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVAR 94 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHH
Confidence 334444444556667776666 445554433 3333333322222222222211 125788889999
Q ss_pred HHHHCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCH
Q 036003 300 AYATHGQGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378 (558)
Q Consensus 300 ~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 378 (558)
...+.|++++|..+++...+ +.|+. .....+...+.+.+++++|....++... .-+.+......+..++.+.|++
T Consensus 95 i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcch
Confidence 99999999999999999998 56765 5667778889999999999999999986 4455677788888999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 379 DEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 379 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
++|..+|+++ ...| +..++..+..++...|+.++|...|+++++...+....|+.++ ++...-..+++++.-
T Consensus 171 ~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 244 (694)
T PRK15179 171 EQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLNADLAALRRLGV 244 (694)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHHHHHHHHHHcCc
Confidence 9999999998 2234 4688999999999999999999999999988755545555443 234444556666643
Q ss_pred C
Q 036003 457 R 457 (558)
Q Consensus 457 ~ 457 (558)
.
T Consensus 245 ~ 245 (694)
T PRK15179 245 E 245 (694)
T ss_pred c
Confidence 3
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=0.00024 Score=67.88 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=76.9
Q ss_pred HHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 036003 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST-PILWRTLLSSCSSHNNLGLA 413 (558)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a 413 (558)
+...|.++.|+..+..+.. ..+.|+..+....+.+.+.++..+|.+.++++ ...|+ ...+-.+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 3455677777777777665 44455555666667777777777777777766 34454 45556666777777777777
Q ss_pred HHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHH
Q 036003 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (558)
++++++....+|.++..|..|..+|...|+..+|.....++
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 77777777777777777777777777666665555544433
No 128
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.33 E-value=1.3e-05 Score=65.41 Aligned_cols=96 Identities=11% Similarity=-0.011 Sum_probs=84.7
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHH
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 438 (558)
+....-.+...+...|++++|.++|+-+ ...| +..-|..|..++...|++++|+..|.++..++|+++.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3445556677788999999999999987 4444 5678889999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHh
Q 036003 439 ARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~ 456 (558)
...|+.+.|.+.|+....
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999998876
No 129
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.33 E-value=0.0038 Score=60.61 Aligned_cols=397 Identities=15% Similarity=0.146 Sum_probs=225.8
Q ss_pred CCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC--C-CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccH
Q 036003 49 LQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE--P-DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSF 125 (558)
Q Consensus 49 ~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 125 (558)
-+-|+.+|+.||.-+.. ..+++++..++.+.. | ....|..-|+.-.+.++++....+|.+.+..-. +...|
T Consensus 16 nP~di~sw~~lire~qt----~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW 89 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQT----QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLW 89 (656)
T ss_pred CCccHHHHHHHHHHHcc----CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHH
Confidence 35678899999987765 478999999998865 3 556788899999999999999999999876533 45566
Q ss_pred HHHHHHHHhcCcccHHH----HHHHHHHHH-HhCCCC-hHHHHHHHHHH---------HHhCCChHHHHHHHhccCC-C-
Q 036003 126 PSLLKACACVGAEALEE----GKQLHCFAI-KLGLNS-NLYVCTTLINL---------YAECSDVEAARRIFENISE-P- 188 (558)
Q Consensus 126 ~~ll~~~~~~~~~~~~~----a~~~~~~~~-~~g~~~-~~~~~~~ll~~---------~~~~g~~~~A~~~~~~~~~-~- 188 (558)
..-|.-..+.. +.... ..+.|+-.+ +.|+.+ +-..|+..+.. |....+++..++++.++.. |
T Consensus 90 ~lYl~YVR~~~-~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm 168 (656)
T KOG1914|consen 90 KLYLSYVRETK-GKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM 168 (656)
T ss_pred HHHHHHHHHHc-cCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc
Confidence 66665444332 33333 233333332 335433 22345544433 2333456667777777765 2
Q ss_pred -Cc-chHHHHHHH-------------HHHCCCccHHHHHHHHHHH--CCCCCCHHH---------------HHHHHHHHh
Q 036003 189 -CV-VSYNAIITA-------------YARSSRPNEALSLFRELQE--RNLKPTDVT---------------MLSALSSCA 236 (558)
Q Consensus 189 -~~-~~~~~li~~-------------~~~~g~~~~A~~~~~~m~~--~~~~p~~~~---------------~~~ll~~~~ 236 (558)
+. ..|+-.... --+...+..|.++++++.. .|+.-...+ |..+|.- .
T Consensus 169 ~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-E 247 (656)
T KOG1914|consen 169 HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-E 247 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-H
Confidence 21 123322110 0112334455555555432 232222111 1111111 1
Q ss_pred ccCChH---------HHHHHHHHH-HHhCCCCchhHHH-----HHHHHHHhcCCH-------HHHHHHHhccCCC----C
Q 036003 237 LLGSLD---------LGKWIHEYI-KKYGLDKYVKVNT-----ALIDMHAKCGRL-------DDAVSVFDNMSGK----D 290 (558)
Q Consensus 237 ~~~~~~---------~a~~~~~~~-~~~~~~~~~~~~~-----~l~~~~~~~g~~-------~~A~~~~~~~~~~----~ 290 (558)
+.+-+. ...-++++. .-.+..|++.... ..-+.+...|+. +++..+++..... +
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~ 327 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN 327 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 111110 001111111 1122233221111 111223333333 3334444433211 2
Q ss_pred HHhHHHHHHHH---HHCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC-ChhHH
Q 036003 291 TQAWSAMIVAY---ATHGQGHKSILMFEEMMKAQ-VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP-GIKHY 365 (558)
Q Consensus 291 ~~~~~~li~~~---~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~ 365 (558)
...|..+..-- ...+..+.....++++...- ..|+ .+|..+++.-.+..-++.|..+|.++.+. +..+ ++.++
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa 405 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVA 405 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHH
Confidence 22222222111 11123556666777766532 3333 56778888888888899999999999886 5555 77788
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC-C--CCcccHHhHHHHHHh
Q 036003 366 GCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELD-D--SHGGDYVILSNLCAR 440 (558)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~--~~~~~~~~l~~~~~~ 440 (558)
++++.-|| .++..-|.++|+-- ..-+ ++..-...+.-+...++-..+..+|++++... + .....|..++.--+.
T Consensus 406 ~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 406 AALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN 484 (656)
T ss_pred HHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh
Confidence 88888776 56788999999875 3233 44455677888888899999999999998773 2 123579999998899
Q ss_pred cCChHHHHHHHHHHHh
Q 036003 441 AGRWEDVDYLRKLMKD 456 (558)
Q Consensus 441 ~g~~~~A~~~~~~m~~ 456 (558)
-|+...+.++-+++..
T Consensus 485 vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 485 VGDLNSILKLEKRRFT 500 (656)
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999998887754
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=0.00018 Score=68.68 Aligned_cols=145 Identities=16% Similarity=0.093 Sum_probs=116.2
Q ss_pred HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC-hhHHHHHH
Q 036003 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG-IKHYGCMV 369 (558)
Q Consensus 292 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li 369 (558)
..+--....+...|++++|+..++.+... .|+. .........+...++.++|.+.++++.. ..|+ ....-.+.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHH
Confidence 33334445566789999999999999884 4554 5555566788999999999999999985 3455 66777889
Q ss_pred HHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHH
Q 036003 370 DLLGRAGRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447 (558)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 447 (558)
.+|.+.|++.+|+.++++. ..+.|+..|..|..+|...|+..++... ....|...|+|++|
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A 444 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQA 444 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHH
Confidence 9999999999999999987 4345788999999999999999888664 34567888999999
Q ss_pred HHHHHHHHhCC
Q 036003 448 DYLRKLMKDRG 458 (558)
Q Consensus 448 ~~~~~~m~~~g 458 (558)
...+....+..
T Consensus 445 ~~~l~~A~~~~ 455 (484)
T COG4783 445 IIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHhc
Confidence 99998887653
No 131
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.29 E-value=3.2e-05 Score=67.79 Aligned_cols=135 Identities=14% Similarity=0.058 Sum_probs=114.5
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 036003 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL--PIKSTPILWRTL 400 (558)
Q Consensus 323 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l 400 (558)
.|+......+-..+...|+-+....+...... ..+.|......++....+.|++..|...|.+. ..++|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 45443335666677788888888888777654 44556667777999999999999999999998 445688999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036003 401 LSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 401 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (558)
.-+|.+.|+.++|...|.+++++.|.++..++.|+..|.-.|+.+.|..++......+.
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999998876544
No 132
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.29 E-value=0.00044 Score=71.49 Aligned_cols=376 Identities=14% Similarity=0.016 Sum_probs=207.8
Q ss_pred CCHHHHHHHHccCCCCCc---ccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHH
Q 036003 70 SSMEHAHLLFDRIPEPDI---VLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQL 146 (558)
Q Consensus 70 ~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~ 146 (558)
.+...|...|-+..+.|+ ..|..|...|...-+...|...|+...+..-. |..........++.. .+++.|..+
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~--~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEE--STWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhcc--ccHHHHHHH
Confidence 356666666666555443 46888888888888888999999988765322 566677788888888 889999888
Q ss_pred HHHHHHhCC-CChHHHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCC
Q 036003 147 HCFAIKLGL-NSNLYVCTTLINLYAECSDVEAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFRELQERNLK 222 (558)
Q Consensus 147 ~~~~~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 222 (558)
.-..-+... ..-...|..+.-.|-+.++...|..-|+.... .|...|..+..+|.+.|++..|+++|.+... +.
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--Lr 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LR 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cC
Confidence 332222110 11122233344557778889999998888776 5677888999999999999999999988876 35
Q ss_pred CCHHHHH-HHHHHHhccCChHHHHHHHHHHHHhC------CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-------
Q 036003 223 PTDVTML-SALSSCALLGSLDLGKWIHEYIKKYG------LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG------- 288 (558)
Q Consensus 223 p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 288 (558)
|+...-. .....-+..|.+.++...+..+.... ..--..++-.+...+.-.|-..+|..+|+.-.+
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 5543211 12223456788999988888775431 011112222222222233333334443333211
Q ss_pred ----CCHHhHHHHHHHHH---HCC--ChH-HHHHH-HHHHHHCCCCCC--------------------HHHHHHHHHHHH
Q 036003 289 ----KDTQAWSAMIVAYA---THG--QGH-KSILM-FEEMMKAQVSPD--------------------EITFLGLLYACS 337 (558)
Q Consensus 289 ----~~~~~~~~li~~~~---~~~--~~~-~a~~~-~~~m~~~g~~p~--------------------~~~~~~ll~~~~ 337 (558)
.+...|-.+..++. +.. -+. -...+ +.+....+.-|+ ..+|..|+..|.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 12223333222211 111 000 00111 111222222111 122222222222
Q ss_pred c----cC----ChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 036003 338 H----TG----LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSH 407 (558)
Q Consensus 338 ~----~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~ 407 (558)
+ .| +...|...+....+ -...+..+|++|.-. ...|.+.-|..-|-+- ..+....+|..+...+...
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEec
Confidence 1 11 12234444444432 122234444444433 4445555555544433 2222445666666666677
Q ss_pred CCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHH
Q 036003 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKL 453 (558)
Q Consensus 408 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 453 (558)
.+++.|...|.+...++|.+...|.....+-...|+.-++..+|.-
T Consensus 864 ~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 7777788888877777777777777777666777777777776654
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.27 E-value=1.2e-05 Score=66.28 Aligned_cols=96 Identities=18% Similarity=0.174 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHH
Q 036003 362 IKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439 (558)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 439 (558)
......+...+...|++++|.+.|+.. ...| +...|..+...+...|++++|...++++++.+|.++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 345556667777888888888888776 3233 56777778888888888888888888888888888888888888888
Q ss_pred hcCChHHHHHHHHHHHhC
Q 036003 440 RAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 440 ~~g~~~~A~~~~~~m~~~ 457 (558)
..|++++|...|++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888877764
No 134
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.00052 Score=60.40 Aligned_cols=240 Identities=12% Similarity=0.081 Sum_probs=149.4
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHH-HHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEAL-SLFREL 216 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m 216 (558)
|++..++..-....... .+...---+-++|...|.+.....-...-..+.....-.+......-++-++-+ ++.+.+
T Consensus 22 Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~ 99 (299)
T KOG3081|consen 22 GNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELV 99 (299)
T ss_pred hHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHH
Confidence 67776666554443321 222222233455666666544333222222223233332222222233433333 344555
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CHHhHH
Q 036003 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWS 295 (558)
Q Consensus 217 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~ 295 (558)
.......+......-...|...+++++|.+...... +......=+..+.+..+++-|.+.+++|.+- +..+.+
T Consensus 100 a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLt 173 (299)
T KOG3081|consen 100 ADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLT 173 (299)
T ss_pred HhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 554444454455555667889999999998877622 2222333355677888999999999999976 455666
Q ss_pred HHHHHHHH----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 036003 296 AMIVAYAT----HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371 (558)
Q Consensus 296 ~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 371 (558)
.|..++.+ .+...+|.-+|++|-++ ..|+..+.+....++...|++++|..++++...+ -..+..+...+|.+
T Consensus 174 QLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~ 250 (299)
T KOG3081|consen 174 QLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANLIVL 250 (299)
T ss_pred HHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHH
Confidence 67666654 45688999999999875 6789999999999999999999999999999974 34456666666666
Q ss_pred HhhcCCHHHH-HHHHHhC
Q 036003 372 LGRAGRLDEA-YRFIDEL 388 (558)
Q Consensus 372 ~~~~g~~~~A-~~~~~~~ 388 (558)
-...|...++ .+.+.++
T Consensus 251 a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 251 ALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHhCCChHHHHHHHHHH
Confidence 6666655443 4445554
No 135
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.25 E-value=0.009 Score=61.63 Aligned_cols=68 Identities=15% Similarity=0.100 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCccCC
Q 036003 396 LWRTLLSSCSSHNNL---GLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVP 463 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 463 (558)
+.+.|++.|.+.++. -+|+-+++..+...|.|..+-..|+.+|.-.|-+..|.++++.+.-+.|..+.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 446677888887764 56777888888888999888889999999999999999999988766665543
No 136
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.21 E-value=2.3e-06 Score=51.37 Aligned_cols=35 Identities=34% Similarity=0.553 Sum_probs=31.1
Q ss_pred ccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCc
Q 036003 88 VLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDD 122 (558)
Q Consensus 88 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 122 (558)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999998874
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.20 E-value=3.1e-05 Score=74.55 Aligned_cols=124 Identities=18% Similarity=0.106 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036003 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSC 404 (558)
Q Consensus 327 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 404 (558)
.....|+..+...++++.|.++|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +...+..-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34456666777788899999999998864 244 4456788888888888999988887 3233 566666667778
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 405 SSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
...++++.|+++.+++.+..|.+..+|..|+.+|.+.|++++|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 899999999999999999999999999999999999999999999998775
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.16 E-value=0.0016 Score=69.00 Aligned_cols=235 Identities=9% Similarity=0.014 Sum_probs=116.5
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHH-HHhcCcccHHHHHHHHHHHHHhCCCChHHHHHH
Q 036003 86 DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA-CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTT 164 (558)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 164 (558)
+...|..|+..+...+++++|.++.+...+. .|+...+-.+... +.+. ++...+..+ .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~--~~~~~~~lv-----------------~ 88 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSR--RPLNDSNLL-----------------N 88 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhh--cchhhhhhh-----------------h
Confidence 4455667777777777777777777755553 4554443333322 2222 333333333 1
Q ss_pred HHHHHHhCCChHHHHHHHhccCC--CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 036003 165 LINLYAECSDVEAARRIFENISE--PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242 (558)
Q Consensus 165 ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 242 (558)
++.......++.....+...+.. .+..++-.+..+|-+.|+.++|.++++++.+.. +-|....+.+...++.. +++
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 22222222223222222222222 222345556666666666666666666666654 33555666666666666 666
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHC-C
Q 036003 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA-Q 321 (558)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g 321 (558)
+|.+++.++... |...+++.++.+++.++..-++.- ++.-..+.+.+... |
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d-------------~d~f~~i~~ki~~~~~ 218 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDD-------------FDFFLRIERKVLGHRE 218 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCccc-------------chHHHHHHHHHHhhhc
Confidence 666666555442 444445555555555554332221 12222222222222 2
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHh
Q 036003 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373 (558)
Q Consensus 322 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 373 (558)
..--..++-.+-..|-..++++++..+++.+.+ --+.|.....-++.+|.
T Consensus 219 ~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~--~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 219 FTRLVGLLEDLYEPYKALEDWDEVIYILKKILE--HDNKNNKAREELIRFYK 268 (906)
T ss_pred cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh--cCCcchhhHHHHHHHHH
Confidence 222233444555566666777777777777765 22234444445555554
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.0008 Score=58.79 Aligned_cols=164 Identities=16% Similarity=0.218 Sum_probs=105.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036003 264 TALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG 340 (558)
Q Consensus 264 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 340 (558)
..++-+....|+.+.|...++.+..+ +...-..-..-+-..|++++|+++++.+.+.. +.|..++..-+...-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 33444445555666666555554422 11111111112334577778888888877754 334566666565666677
Q ss_pred ChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHH
Q 036003 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSH---NNLGLAKQ 415 (558)
Q Consensus 341 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~---g~~~~a~~ 415 (558)
+.-+|++-+....+ .+..|...|..+...|...|++++|.-.++++ -..| ++..+..+...+-.. .+...+.+
T Consensus 135 K~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77788888888776 56778889999999999999999998888887 3345 445555555554433 36778889
Q ss_pred HHHHHHccCCCCccc
Q 036003 416 VIERIFELDDSHGGD 430 (558)
Q Consensus 416 ~~~~~~~~~~~~~~~ 430 (558)
+|.+++++.|.+...
T Consensus 213 yy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 213 YYERALKLNPKNLRA 227 (289)
T ss_pred HHHHHHHhChHhHHH
Confidence 999999888855433
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.14 E-value=3.7e-06 Score=50.07 Aligned_cols=34 Identities=26% Similarity=0.516 Sum_probs=28.5
Q ss_pred cccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCC
Q 036003 87 IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP 120 (558)
Q Consensus 87 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 120 (558)
+.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888888888888888888888888888877
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.14 E-value=9.5e-05 Score=71.28 Aligned_cols=128 Identities=10% Similarity=0.121 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 036003 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341 (558)
Q Consensus 262 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 341 (558)
....|+..+...++++.|+.+|+++.+.++.....++..+...++..+|++++++..+.. +-+...+..-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 334566677777888888888888888777777778888888888888999888888642 2255566666667888889
Q ss_pred hHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 036003 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392 (558)
Q Consensus 342 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 392 (558)
++.|..+.+++.. -.+.+-.+|..|..+|.+.|+++.|+..++.+|..+
T Consensus 250 ~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999988875 334456688999999999999999999888886443
No 142
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=0.00037 Score=65.03 Aligned_cols=264 Identities=13% Similarity=0.020 Sum_probs=157.9
Q ss_pred HHHHHhCCChHHHHHHHhccCC--C-CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCh
Q 036003 166 INLYAECSDVEAARRIFENISE--P-CVVSYNAIITAYARSSRPNEALSLFRELQERNLKP-TDVTMLSALSSCALLGSL 241 (558)
Q Consensus 166 l~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~ 241 (558)
.+.+.+..++.+|+..+....+ | +..-|..-...+...|++++|.--.+.-.+. +| ......-.-.++...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHH
Confidence 3455566666667666666554 3 3334555555566666666665555443332 22 122333344444444444
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CCHHhHHHH-HHHHHHCCChHHHHHHHH
Q 036003 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG-----KDTQAWSAM-IVAYATHGQGHKSILMFE 315 (558)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l-i~~~~~~~~~~~a~~~~~ 315 (558)
.+|...++ +...+ ....|+..++.+.. |....|..+ ..++...|++++|...--
T Consensus 134 i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 134 IEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred HHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 44444443 00000 11122222222221 112233322 245667788888887777
Q ss_pred HHHHCCCCCCHHHHHHHHH--HHHccCChHHHHHHHHHchhhcCCCCChhHH-------------HHHHHHHhhcCCHHH
Q 036003 316 EMMKAQVSPDEITFLGLLY--ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY-------------GCMVDLLGRAGRLDE 380 (558)
Q Consensus 316 ~m~~~g~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------------~~li~~~~~~g~~~~ 380 (558)
...+.. ++ ..+...++ ++...++.+.|...|++.. .+.|+...- ..=.+-..+.|++.+
T Consensus 194 ~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 194 DILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence 666632 21 22233333 3445677888888888776 445543221 111233567899999
Q ss_pred HHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHH
Q 036003 381 AYRFIDEL-PIKS-----TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454 (558)
Q Consensus 381 A~~~~~~~-~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (558)
|.+.+.+. .+.| +...|.....+..+.|+.++|+.--++++++++.-...|..-+.++...++|++|.+-+++.
T Consensus 268 A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 268 AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887 4344 45667777778889999999999999999999988888999999999999999999999887
Q ss_pred HhC
Q 036003 455 KDR 457 (558)
Q Consensus 455 ~~~ 457 (558)
.+.
T Consensus 348 ~q~ 350 (486)
T KOG0550|consen 348 MQL 350 (486)
T ss_pred Hhh
Confidence 653
No 143
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.08 E-value=0.00012 Score=60.31 Aligned_cols=113 Identities=10% Similarity=0.077 Sum_probs=86.5
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 036003 313 MFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI 390 (558)
Q Consensus 313 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 390 (558)
.+++... ..|+. .....+...+...|++++|.+.|+.+.. ..+.+...+..+...+.+.|++++|..++++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444 34433 4455666777888999999999988876 33456778888888999999999999988887 33
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcc
Q 036003 391 KS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429 (558)
Q Consensus 391 ~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 429 (558)
.| +...+..+...+...|++++|...|+++++.+|.+..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 34 5677788888899999999999999999999987654
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.08 E-value=6.1e-06 Score=49.46 Aligned_cols=34 Identities=41% Similarity=0.803 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCC
Q 036003 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPT 224 (558)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 224 (558)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888889999999999999988888888887
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.00 E-value=1.1e-05 Score=48.00 Aligned_cols=33 Identities=42% Similarity=0.810 Sum_probs=25.5
Q ss_pred chHHHHHHHHHHCCCccHHHHHHHHHHHCCCCC
Q 036003 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKP 223 (558)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 223 (558)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777788888888888888888877777766
No 146
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.00097 Score=58.28 Aligned_cols=164 Identities=13% Similarity=0.116 Sum_probs=128.7
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL-LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 371 (558)
.|..++-+....|+.+.|...++++... + |...-...+ ..-+-..|.+++|.++++.+.++ -+.|..++---+-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence 3556666777889999999999999876 3 443222222 22245678999999999999974 35677777777777
Q ss_pred HhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcC---ChHH
Q 036003 372 LGRAGRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG---RWED 446 (558)
Q Consensus 372 ~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~ 446 (558)
.-..|+.-+|++.+.+. .+..|...|.-+...|...|+++.|.-++++++=..|-++..+..+.+.+.-.| +.+-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77788888888877776 455799999999999999999999999999999999999999999988876555 4667
Q ss_pred HHHHHHHHHhCCCc
Q 036003 447 VDYLRKLMKDRGVL 460 (558)
Q Consensus 447 A~~~~~~m~~~g~~ 460 (558)
|.+++.+..+....
T Consensus 210 arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 210 ARKYYERALKLNPK 223 (289)
T ss_pred HHHHHHHHHHhChH
Confidence 89999988875543
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.99 E-value=9.3e-06 Score=60.36 Aligned_cols=78 Identities=14% Similarity=0.255 Sum_probs=52.9
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHH
Q 036003 375 AGRLDEAYRFIDEL-PIKS---TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL 450 (558)
Q Consensus 375 ~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 450 (558)
.|+++.|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.++.+......++.+|.+.|++++|.+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777776 1122 344555577777888888888888877 666666656666667888888888888887
Q ss_pred HHH
Q 036003 451 RKL 453 (558)
Q Consensus 451 ~~~ 453 (558)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.96 E-value=0.00028 Score=58.70 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=22.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHH
Q 036003 400 LLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452 (558)
Q Consensus 400 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 452 (558)
|...+...|++++|+..++.. ...+..+..+..++++|.+.|++++|...|+
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 334444444444444444331 1112222334444555555555555555544
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.95 E-value=9e-05 Score=56.23 Aligned_cols=92 Identities=16% Similarity=0.190 Sum_probs=72.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcC
Q 036003 365 YGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442 (558)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 442 (558)
+..+...+...|++++|...+++. ...| +...+..+...+...+++++|.+.+++..+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777788888888888876 3333 34667777888888888889999888888888887778888888888888
Q ss_pred ChHHHHHHHHHHHh
Q 036003 443 RWEDVDYLRKLMKD 456 (558)
Q Consensus 443 ~~~~A~~~~~~m~~ 456 (558)
++++|...+++..+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888887754
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.94 E-value=0.00071 Score=56.30 Aligned_cols=125 Identities=17% Similarity=0.128 Sum_probs=82.7
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC--hhHHHHHH
Q 036003 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPD--EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG--IKHYGCMV 369 (558)
Q Consensus 294 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li 369 (558)
|..++..+ ..++...+...++.+.+....-. ....-.+...+...|++++|...|+.+... ...+. ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 44455555 47777788778888877532211 123334556677788888888888888874 32222 12344567
Q ss_pred HHHhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036003 370 DLLGRAGRLDEAYRFIDELPI-KSTPILWRTLLSSCSSHNNLGLAKQVIERI 420 (558)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 420 (558)
..+...|++++|+..++..+. ......+......+...|+.++|...|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 778888888888888877632 224456667778888888888888888775
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.87 E-value=0.00027 Score=56.49 Aligned_cols=100 Identities=11% Similarity=0.036 Sum_probs=48.3
Q ss_pred HHHHHHHHccCChHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 036003 330 LGLLYACSHTGLVDEGWNYFYSMRDKYGIVP-GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST----PILWRTLLSS 403 (558)
Q Consensus 330 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~ 403 (558)
..+...+.+.|++++|.+.|..+...+.-.+ ....+..+...+.+.|++++|.+.|+.+ ...|+ ...+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444555555555555555544211000 1223444555555555555555555554 11121 2344455555
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCcc
Q 036003 404 CSSHNNLGLAKQVIERIFELDDSHGG 429 (558)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~~~~~~ 429 (558)
+...|+.++|.+.++++++..|++..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChh
Confidence 55566666666666666665555443
No 152
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.87 E-value=0.00018 Score=54.47 Aligned_cols=82 Identities=13% Similarity=0.017 Sum_probs=69.9
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhHHCCC-CCCcccHHHHHHHHHhcCc------ccHHHHHHHHHHHHHhCCCChHHHH
Q 036003 90 FNTMARGYSRSKTPIRAIFLFVELLNSGL-LPDDYSFPSLLKACACVGA------EALEEGKQLHCFAIKLGLNSNLYVC 162 (558)
Q Consensus 90 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~------~~~~~a~~~~~~~~~~g~~~~~~~~ 162 (558)
....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- +.+-+.+.+++.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556667777999999999999999999 8999999999999887642 2456788899999999999999999
Q ss_pred HHHHHHHHh
Q 036003 163 TTLINLYAE 171 (558)
Q Consensus 163 ~~ll~~~~~ 171 (558)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.85 E-value=0.00023 Score=56.91 Aligned_cols=96 Identities=13% Similarity=0.023 Sum_probs=81.0
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC---cccHHhH
Q 036003 363 KHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH---GGDYVIL 434 (558)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l 434 (558)
.++..++..+.+.|++++|.+.|+.+ ...|+ ...+..+..++...|+++.|...++++....|.+ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667888899999999999999988 22333 3466778999999999999999999999988775 4568888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC
Q 036003 435 SNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 435 ~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
+.++.+.|++++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998764
No 154
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.83 E-value=0.0055 Score=60.65 Aligned_cols=198 Identities=19% Similarity=0.174 Sum_probs=107.8
Q ss_pred cHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHC
Q 036003 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203 (558)
Q Consensus 124 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 203 (558)
.+++.=++|.+.....+-+...-++++.++|-.|+... +...++-.|.+.+|.++|.+ .
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~ 658 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------S 658 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------c
Confidence 34444455555422233344445667777787777654 34556677888888888765 4
Q ss_pred CCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh--CC-CCchhHHHHHHHHHHhcCCHHHHH
Q 036003 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY--GL-DKYVKVNTALIDMHAKCGRLDDAV 280 (558)
Q Consensus 204 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~~A~ 280 (558)
|.-..|+++|..|.-- -...-+...|..++-..+.++-.+. ++ +| .+-..++...|+.++|.
T Consensus 659 G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP-----kaAAEmLiSaGe~~KAi 723 (1081)
T KOG1538|consen 659 GHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADWARNIKEP-----KAAAEMLISAGEHVKAI 723 (1081)
T ss_pred CchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc-----HHHHHHhhcccchhhhh
Confidence 5666666666655321 1122233344443333333222111 11 12 22345566677777766
Q ss_pred HHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC
Q 036003 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP 360 (558)
Q Consensus 281 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 360 (558)
.+. ..+|..+-+.++-+++-. .+..+...+...+.+...+..|-++|.+|-.
T Consensus 724 ~i~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD------ 775 (1081)
T KOG1538|consen 724 EIC------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD------ 775 (1081)
T ss_pred hhh------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc------
Confidence 542 234444555555444432 1334444555555566667777777777743
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDELP 389 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 389 (558)
...+++.....+++.+|..+-++.|
T Consensus 776 ----~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 776 ----LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred ----HHHHhhheeecccchHhHhhhhhCc
Confidence 2356777777888888888777773
No 155
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.83 E-value=5.1e-05 Score=53.88 Aligned_cols=64 Identities=17% Similarity=0.162 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcC-ChHHHHHHHHHHHh
Q 036003 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG-RWEDVDYLRKLMKD 456 (558)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 456 (558)
+..+|..+...+...|++++|+..|+++++.+|.++.+|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999 79999999988765
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.80 E-value=0.00044 Score=66.95 Aligned_cols=85 Identities=12% Similarity=0.085 Sum_probs=41.0
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHH
Q 036003 372 LGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDY 449 (558)
Q Consensus 372 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 449 (558)
+...|++++|+++|++. ...| +...|..+..+|...|++++|+..++++++++|.++..|..++.+|...|++++|..
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 33444455555544444 2122 334444444445555555555555555555555555555555555555555555555
Q ss_pred HHHHHHh
Q 036003 450 LRKLMKD 456 (558)
Q Consensus 450 ~~~~m~~ 456 (558)
.|++..+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 5554443
No 157
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.78 E-value=3e-05 Score=44.86 Aligned_cols=31 Identities=26% Similarity=0.478 Sum_probs=24.9
Q ss_pred ccHHHHHHHHhcCCCchHHHHHHHHhHHCCC
Q 036003 88 VLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118 (558)
Q Consensus 88 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 118 (558)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887664
No 158
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.72 E-value=9.9e-05 Score=51.65 Aligned_cols=58 Identities=12% Similarity=0.187 Sum_probs=45.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 400 LLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 400 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
+...+...|++++|...|+++++..|.++..+..++.++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556777888888888888888888888888888888888888888888888877653
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.68 E-value=0.003 Score=59.26 Aligned_cols=20 Identities=5% Similarity=0.109 Sum_probs=9.8
Q ss_pred HHHHHHCCCccHHHHHHHHH
Q 036003 197 ITAYARSSRPNEALSLFREL 216 (558)
Q Consensus 197 i~~~~~~g~~~~A~~~~~~m 216 (558)
...|-..|++++|.+.|.+.
T Consensus 42 a~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHH
Confidence 44455555555555555443
No 160
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.66 E-value=5.2e-05 Score=43.84 Aligned_cols=29 Identities=38% Similarity=0.769 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHCCCccHHHHHHHHHHHCC
Q 036003 192 SYNAIITAYARSSRPNEALSLFRELQERN 220 (558)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 220 (558)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776655
No 161
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.65 E-value=0.0002 Score=64.23 Aligned_cols=91 Identities=11% Similarity=0.059 Sum_probs=60.9
Q ss_pred HHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 036003 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST-PILWRTLLSSCSSHNNLGLA 413 (558)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a 413 (558)
+.+.+++.+|+..|.+..+ -.+-|...|..=..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4566777777777777764 22335566666677777777777777666655 44443 35677777777777777777
Q ss_pred HHHHHHHHccCCCCc
Q 036003 414 KQVIERIFELDDSHG 428 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~ 428 (558)
++.|+++++++|.+.
T Consensus 169 ~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 169 IEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHhhhccCCCcH
Confidence 777777777777764
No 162
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.65 E-value=0.061 Score=51.47 Aligned_cols=379 Identities=11% Similarity=0.086 Sum_probs=197.7
Q ss_pred hhcCCCCCCHHHHHHHHccCCCC---Cccc------HHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHH
Q 036003 63 CTQNPTTSSMEHAHLLFDRIPEP---DIVL------FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133 (558)
Q Consensus 63 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 133 (558)
+.+. +++.+|.++|.++-.. +... -+.++++|... +.+.....+....+. .| ...|..+..++.
T Consensus 16 Lqkq---~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~ 88 (549)
T PF07079_consen 16 LQKQ---KKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALV 88 (549)
T ss_pred HHHH---hhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHH
Confidence 3455 8999999999988642 2222 33466666543 344444445455443 33 456667776655
Q ss_pred hcCcccHHHHHHHHHHHHHh--CCC------------ChHHHHHHHHHHHHhCCChHHHHHHHhccCC--------CCcc
Q 036003 134 CVGAEALEEGKQLHCFAIKL--GLN------------SNLYVCTTLINLYAECSDVEAARRIFENISE--------PCVV 191 (558)
Q Consensus 134 ~~~~~~~~~a~~~~~~~~~~--g~~------------~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--------~~~~ 191 (558)
.-..+.+.+|.+.+..-... +.. +|-..-+..+..+...|++.+++.+++++.. -+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 44448899998888776654 222 2333446777888999999999999988864 5777
Q ss_pred hHHHHHHHHHHC--------CCcc-------HHHHHHHHHHHC------CCCCCHHHHHHHHHHHhcc--CChHHHHHHH
Q 036003 192 SYNAIITAYARS--------SRPN-------EALSLFRELQER------NLKPTDVTMLSALSSCALL--GSLDLGKWIH 248 (558)
Q Consensus 192 ~~~~li~~~~~~--------g~~~-------~A~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~ 248 (558)
+|+.++-.+.++ ...+ -+.-...+|... .+.|....+..++.-..-. ....--.+++
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 888755544432 1111 122222222211 1233333333333322211 1122223333
Q ss_pred HHHHHhCCCCchh-HHHHHHHHHHhcCCHHHHHHHHhccC--------CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHH
Q 036003 249 EYIKKYGLDKYVK-VNTALIDMHAKCGRLDDAVSVFDNMS--------GKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319 (558)
Q Consensus 249 ~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 319 (558)
+.-.+.-+.|+-. +...|..-+.+ +.+++..+-+.+. +.=+.++..++....+.++..+|-..+.-+..
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3334444444422 22233333333 2333333222221 11233455555555666666666555554433
Q ss_pred CCCCCCHH---------------------------------------------HHHHHHHH---HHccCC-hHHHHHHHH
Q 036003 320 AQVSPDEI---------------------------------------------TFLGLLYA---CSHTGL-VDEGWNYFY 350 (558)
Q Consensus 320 ~g~~p~~~---------------------------------------------~~~~ll~~---~~~~g~-~~~a~~~~~ 350 (558)
+.|+.. ....|+.+ +-+.|. -++|.++++
T Consensus 327 --ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 327 --LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred --cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 122211 11111111 112232 456666666
Q ss_pred HchhhcCCCCChhHHHHHH----HHHhhc---CCHH---HHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHH
Q 036003 351 SMRDKYGIVPGIKHYGCMV----DLLGRA---GRLD---EAYRFIDELPIKS----TPILWRTLLSS--CSSHNNLGLAK 414 (558)
Q Consensus 351 ~~~~~~~~~~~~~~~~~li----~~~~~~---g~~~---~A~~~~~~~~~~~----~~~~~~~l~~~--~~~~g~~~~a~ 414 (558)
.+.+ --+-|..+-+.+. ..|.++ ..+. +-..++++.++.| +...-|.|.+| +..+|++.++.
T Consensus 405 ~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 405 LILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 6653 1122332222221 112211 1111 1222333444444 23445555554 45789999998
Q ss_pred HHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 415 QVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
-.-.-..+..| ++.+|..++-++....++++|..++..+.
T Consensus 483 ~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 483 LYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 88888888888 78999999999999999999999998653
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.65 E-value=0.00057 Score=58.82 Aligned_cols=94 Identities=12% Similarity=0.062 Sum_probs=61.6
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHH
Q 036003 363 KHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
..+..+...+...|++++|...|++. ...|+ ...+..+...+...|++++|...++++++..|.+...+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555566666666666666666655 21121 34666777777777888888888888887777777777777777
Q ss_pred HHhcCC--------------hHHHHHHHHHHHh
Q 036003 438 CARAGR--------------WEDVDYLRKLMKD 456 (558)
Q Consensus 438 ~~~~g~--------------~~~A~~~~~~m~~ 456 (558)
|...|+ +++|.+++++...
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 776665 4556666665554
No 164
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.64 E-value=0.00072 Score=51.07 Aligned_cols=90 Identities=16% Similarity=0.145 Sum_probs=42.3
Q ss_pred HHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 036003 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLG 411 (558)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~ 411 (558)
..+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.+++. ...| +..++..+...+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 3344444555555555444431 1122234444444555555555555555443 1112 2234555555555556666
Q ss_pred HHHHHHHHHHccCC
Q 036003 412 LAKQVIERIFELDD 425 (558)
Q Consensus 412 ~a~~~~~~~~~~~~ 425 (558)
.|...+++..+..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 66666655555443
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.62 E-value=0.016 Score=54.29 Aligned_cols=210 Identities=16% Similarity=0.161 Sum_probs=109.3
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 217 (558)
.++++|..+|++. .+.|...|++++|.+.|.+. ...+.+.++...|-..|.++.
T Consensus 29 ~~~e~Aa~~y~~A---------------a~~fk~~~~~~~A~~ay~kA-----------a~~~~~~~~~~~Aa~~~~~Aa 82 (282)
T PF14938_consen 29 PDYEEAADLYEKA---------------ANCFKLAKDWEKAAEAYEKA-----------ADCYEKLGDKFEAAKAYEEAA 82 (282)
T ss_dssp HHHHHHHHHHHHH---------------HHHHHHTT-CHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---------------HHHHHHHhccchhHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHH
Confidence 4677777776654 44566677777777777653 333333333333333332221
Q ss_pred H---CCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-CCHHHHHHHHhccCCC--
Q 036003 218 E---RNLKPT--DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC-GRLDDAVSVFDNMSGK-- 289 (558)
Q Consensus 218 ~---~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~-- 289 (558)
. .+ .|+ ...|...+..|...|++..|-..+.. +...|... |++++|.+.|++..+-
T Consensus 83 ~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~ 146 (282)
T PF14938_consen 83 NCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYE 146 (282)
T ss_dssp HHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHH
T ss_pred HHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1 00 111 11223333445556666555544433 44445555 6677777666655311
Q ss_pred -------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHccCChHHHHHHHHHchhhc
Q 036003 290 -------DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS-----PDEI-TFLGLLYACSHTGLVDEGWNYFYSMRDKY 356 (558)
Q Consensus 290 -------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 356 (558)
-...+..+...+.+.|++++|.++|++....... .+.. .|...+-++...|++..|.+.+++.....
T Consensus 147 ~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 147 QEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred HCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 1234566677788888888888888887764322 1221 23333445666788888888888876431
Q ss_pred -CCCCC--hhHHHHHHHHHhh--cCCHHHHHHHHHhCC
Q 036003 357 -GIVPG--IKHYGCMVDLLGR--AGRLDEAYRFIDELP 389 (558)
Q Consensus 357 -~~~~~--~~~~~~li~~~~~--~g~~~~A~~~~~~~~ 389 (558)
++..+ ......|+.++-. ...+.+|..-|+.+.
T Consensus 227 ~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 227 PSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp TTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred CCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 22222 3445566666643 345667777777664
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.59 E-value=0.0011 Score=64.24 Aligned_cols=101 Identities=10% Similarity=0.009 Sum_probs=62.0
Q ss_pred HHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 036003 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGL 412 (558)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 412 (558)
.+...|++++|...|.++.. .-+.+...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 34455666666666666664 22334555666666666666666666666665 3333 45566666667777777777
Q ss_pred HHHHHHHHHccCCCCcccHHhHHHH
Q 036003 413 AKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 413 a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
|...|+++++++|.++.....+..+
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7777777777777766555544444
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.59 E-value=0.0033 Score=63.71 Aligned_cols=138 Identities=16% Similarity=0.076 Sum_probs=68.5
Q ss_pred CCHHhHHHHHHHHHHC--C---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcc--------CChHHHHHHHHHchh
Q 036003 289 KDTQAWSAMIVAYATH--G---QGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSHT--------GLVDEGWNYFYSMRD 354 (558)
Q Consensus 289 ~~~~~~~~li~~~~~~--~---~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~--------g~~~~a~~~~~~~~~ 354 (558)
.+..+|...+.+.... + ...+|..+|++..+ ..|+. ..+..+..++... +++..+.+...+...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4667777777764432 2 26678888888887 45654 3333333222111 011222222222221
Q ss_pred hcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 355 KYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 355 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
......+...|.++.-.....|++++|...+++. ...|+...|..+...+...|+.++|.+.++++..++|.++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 1012223344554544444455555555555554 3344555555555555555555555555555555555544
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.58 E-value=0.00073 Score=57.93 Aligned_cols=94 Identities=12% Similarity=-0.029 Sum_probs=74.3
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHH
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 435 (558)
....|..+...+...|++++|...|++. ...|+ ..+|..+...+...|++++|...++++++..|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556677777888889999999988886 22222 357888889999999999999999999999988888888888
Q ss_pred HHHH-------hcCChHHHHHHHHHH
Q 036003 436 NLCA-------RAGRWEDVDYLRKLM 454 (558)
Q Consensus 436 ~~~~-------~~g~~~~A~~~~~~m 454 (558)
.+|. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8887 788888776666544
No 169
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.58 E-value=0.14 Score=53.41 Aligned_cols=221 Identities=12% Similarity=0.074 Sum_probs=128.6
Q ss_pred HHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCh
Q 036003 96 GYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDV 175 (558)
Q Consensus 96 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 175 (558)
.....+++.+|+....++.+. .|+ ..|..+++++.....|..++|..+++.....+.. |..|...+-.+|.+.++.
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 334556777777777777654 333 3455566665544337777777777666555433 677777777777777777
Q ss_pred HHHHHHHhccCC--CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----------ChHH
Q 036003 176 EAARRIFENISE--PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG----------SLDL 243 (558)
Q Consensus 176 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------~~~~ 243 (558)
++|..+|++..+ |+......+..+|.+.+.+.+-.+.--+|-+. .+-+...|-++++...+.- -..-
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 777777777765 55444555566677766665544443333332 3334455555555443321 1223
Q ss_pred HHHHHHHHHHhC-CCCchhHHHHHHHHHHhcCCHHHHHHHHhc-c----CCCCHHhHHHHHHHHHHCCChHHHHHHHHHH
Q 036003 244 GKWIHEYIKKYG-LDKYVKVNTALIDMHAKCGRLDDAVSVFDN-M----SGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317 (558)
Q Consensus 244 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 317 (558)
|.+.++.+.+.+ .-.+..-.-.....+...|++++|++++.. . ..-+...-+.-+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 455555554443 111111122233445567788888887732 2 2224444556667777788888888888888
Q ss_pred HHCC
Q 036003 318 MKAQ 321 (558)
Q Consensus 318 ~~~g 321 (558)
...|
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 8765
No 170
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.58 E-value=0.0015 Score=63.44 Aligned_cols=120 Identities=11% Similarity=0.077 Sum_probs=92.0
Q ss_pred CCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC-C-----CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCC
Q 036003 48 HLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE-P-----DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPD 121 (558)
Q Consensus 48 g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 121 (558)
+...+......+++.+... .+++.+..++-+... | -..+..++|+.|.+.|..++++.++..=...|+-||
T Consensus 61 ~~~vS~~dld~fvn~~~~~---~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D 137 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESK---DDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPD 137 (429)
T ss_pred CCCCcHHHHHHHHhhcCCH---hHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCC
Confidence 4456666777778877777 778888887766543 1 234556888888888888888888888888888888
Q ss_pred cccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 036003 122 DYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172 (558)
Q Consensus 122 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 172 (558)
..+++.||..+.+. |++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 138 ~~s~n~Lmd~fl~~--~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKK--GNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhc--ccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888 88888888888888777666777776666666665
No 171
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.57 E-value=0.01 Score=49.42 Aligned_cols=133 Identities=11% Similarity=0.061 Sum_probs=105.2
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHH
Q 036003 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS---TPILW 397 (558)
Q Consensus 322 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~ 397 (558)
..|+...-..|..+....|+..+|...|++.... -+..|....-.+.++....+++..|...++++ ...| .+.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 5678877888999999999999999999999873 45667888888899999999999999999987 2222 23445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 398 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
-.+...+...|++..|+..|+.++..-|. +..-......+.++|+.++|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 56778899999999999999999987765 34555566778899988887766655543
No 172
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.57 E-value=0.071 Score=50.02 Aligned_cols=289 Identities=14% Similarity=0.096 Sum_probs=179.8
Q ss_pred cHHHHHHHHhc--CCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHH--HHH
Q 036003 89 LFNTMARGYSR--SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYV--CTT 164 (558)
Q Consensus 89 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ 164 (558)
-|.+|-.++.. .|+-..|.++-.+-.+. +.-|...+..++.+-...-.|+.+.|.+-|+.|.. .|.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHH
Confidence 46666666654 46777777776665433 45577777888877666555899999999998875 232222 222
Q ss_pred HHHHHHhCCChHHHHHHHhccCC--CC-cchHHHHHHHHHHCCCccHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHh--
Q 036003 165 LINLYAECSDVEAARRIFENISE--PC-VVSYNAIITAYARSSRPNEALSLFRELQERN-LKPTDV--TMLSALSSCA-- 236 (558)
Q Consensus 165 ll~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~--~~~~ll~~~~-- 236 (558)
|.-.--+.|+.+.|...-+..-. |. ...+.+.+...+..|+|+.|+++++.-++.. +.++.. .-..|+.+-.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 33333567888888877776654 22 3467788888999999999999998765542 333332 1122332221
Q ss_pred -ccCChHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHH
Q 036003 237 -LLGSLDLGKWIHEYIKKYGLDKYVKVN-TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314 (558)
Q Consensus 237 -~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 314 (558)
-..+...|...-.+..+ +.|+..-- -.-..++++.|++.++-.+++.+-+..++.--..+-.+.+.|+ .++.-+
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gd--ta~dRl 315 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGD--TALDRL 315 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCC--cHHHHH
Confidence 12244455555444444 34443221 2235678899999999999998875433332223333344444 444444
Q ss_pred HHHHH-CCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh-cCCHHHHHHHHHhC
Q 036003 315 EEMMK-AQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR-AGRLDEAYRFIDEL 388 (558)
Q Consensus 315 ~~m~~-~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~ 388 (558)
++..+ ..++||. .+...+..+-...|++..|..--+... ...|....|..|.+.-.. .|+-.++...+-+.
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 44433 1255554 566677777888899888877666554 557888888888876554 49999999998876
No 173
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.56 E-value=0.079 Score=50.15 Aligned_cols=111 Identities=13% Similarity=0.157 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036003 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406 (558)
Q Consensus 327 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (558)
.+.+..|.-|...|....|.++-.+. .+ |+...|...+.+|+..++|++-.++... +..+.-|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 45566677777889888888776555 33 7889999999999999999988887654 3355778889999999
Q ss_pred cCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHH
Q 036003 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454 (558)
Q Consensus 407 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (558)
.|+..+|..+..+ ..+..-+..|.+.|+|.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999887 22467788899999999998765444
No 174
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.53 E-value=0.0027 Score=54.56 Aligned_cols=131 Identities=14% Similarity=0.172 Sum_probs=82.6
Q ss_pred CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHH
Q 036003 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD--EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367 (558)
Q Consensus 290 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 367 (558)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+.... .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 445567777777778888888888887776433222 346666777777778888888777777652 2234455556
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCC
Q 036003 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443 (558)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 443 (558)
+...+...|+...+..-++.. ...+++|.+++++++..+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666666666655544322221 113677888888888888876 5555555555543
No 175
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.52 E-value=0.00087 Score=60.26 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=80.3
Q ss_pred HHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhc
Q 036003 298 IVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP-GIKHYGCMVDLLGRA 375 (558)
Q Consensus 298 i~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~ 375 (558)
..-+.+.+++.+|+..|.+.++ +.| |.+-|..-..+|++.|.++.|++-.+.... +.| ....|..|..+|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHcc
Confidence 4457788999999999999999 455 567788888999999999999988887764 344 367899999999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHH
Q 036003 376 GRLDEAYRFIDEL-PIKSTPILWRT 399 (558)
Q Consensus 376 g~~~~A~~~~~~~-~~~~~~~~~~~ 399 (558)
|++++|++.|++. .+.|+-.+|..
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHH
Confidence 9999999999987 77787666654
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0055 Score=55.57 Aligned_cols=104 Identities=11% Similarity=0.088 Sum_probs=86.7
Q ss_pred CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHccCCCCcccHH
Q 036003 358 IVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSH---NNLGLAKQVIERIFELDDSHGGDYV 432 (558)
Q Consensus 358 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~ 432 (558)
-+-|...|-.|...|...|+++.|..-|.+. ... +++..+..+..++..+ ....++..+|++++..+|.+..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 3557899999999999999999999999887 333 3566666666665433 3568899999999999999999999
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 036003 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLK 461 (558)
Q Consensus 433 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 461 (558)
.|...+...|++.+|...|+.|.+.....
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999865543
No 177
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.50 E-value=0.00033 Score=48.93 Aligned_cols=61 Identities=23% Similarity=0.259 Sum_probs=49.6
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 368 MVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
+...+.+.|++++|.+.|+++ ...| +...+..+..++...|++++|...|+++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788899999999999987 4445 567888889999999999999999999999988764
No 178
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.49 E-value=0.0017 Score=49.30 Aligned_cols=79 Identities=8% Similarity=0.098 Sum_probs=66.1
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------ChHHHHHHHHHchhhcCCCCChhHH
Q 036003 295 SAMIVAYATHGQGHKSILMFEEMMKAQV-SPDEITFLGLLYACSHTG--------LVDEGWNYFYSMRDKYGIVPGIKHY 365 (558)
Q Consensus 295 ~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 365 (558)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++...+.+|+.|... +++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 4456666777999999999999999999 899999999999877542 355678899999886 899999999
Q ss_pred HHHHHHHhh
Q 036003 366 GCMVDLLGR 374 (558)
Q Consensus 366 ~~li~~~~~ 374 (558)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
No 179
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.46 E-value=0.00035 Score=51.84 Aligned_cols=79 Identities=15% Similarity=0.261 Sum_probs=35.5
Q ss_pred CCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHH
Q 036003 304 HGQGHKSILMFEEMMKAQVS-PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP-GIKHYGCMVDLLGRAGRLDEA 381 (558)
Q Consensus 304 ~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A 381 (558)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. . ...+ +....-.+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 35555555555555553221 1223333345555555555555555555 1 1111 122333334555555555555
Q ss_pred HHHHH
Q 036003 382 YRFID 386 (558)
Q Consensus 382 ~~~~~ 386 (558)
+++|+
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
No 180
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.45 E-value=0.0039 Score=58.24 Aligned_cols=133 Identities=11% Similarity=0.091 Sum_probs=97.5
Q ss_pred HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCChHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 036003 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA-CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370 (558)
Q Consensus 292 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 370 (558)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+ .+..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 467778888888888888999999888543 2223333333333 3335777789999999997 45567788899999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 036003 371 LLGRAGRLDEAYRFIDEL-PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 371 ~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 427 (558)
.+.+.|+.+.|..+|++. ..-+. ...|...+..-.+.|+.+.+..+.+++.+.-|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999987 22233 3589999999999999999999999998877663
No 181
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.44 E-value=0.0017 Score=63.03 Aligned_cols=119 Identities=8% Similarity=0.051 Sum_probs=80.3
Q ss_pred CCChHHHHHHHHHHHHhCCChHHHHHHHhccCC-C-----CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHH
Q 036003 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISE-P-----CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTM 228 (558)
Q Consensus 155 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 228 (558)
.+.+......+++.+....+++.+..++.+... + -..|.+++++.|.+.|..++++.++..=..-|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 344555666667777667777777777666553 1 1234567777778877777887777777777777888888
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 036003 229 LSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273 (558)
Q Consensus 229 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (558)
+.||..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888887777777776666555555554444444443
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.42 E-value=0.00017 Score=51.05 Aligned_cols=52 Identities=10% Similarity=0.263 Sum_probs=41.1
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 405 SSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
...|++++|++.|+++++..|.+...+..++.+|.+.|++++|..+++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567888888888888888888888888888888888888888888877665
No 183
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.41 E-value=0.00053 Score=49.20 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=51.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036003 401 LSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 401 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (558)
...|.+.+++++|.++++++++.+|.++..+...+.+|.+.|++++|.+.+++..+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678889999999999999999999999999999999999999999999998886443
No 184
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.39 E-value=0.0011 Score=61.85 Aligned_cols=129 Identities=11% Similarity=0.002 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHch---hhcCCC-CChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCC-CCH
Q 036003 327 ITFLGLLYACSHTGLVDEGWNYFYSMR---DKYGIV-PGIKHYGCMVDLLGRAGRLDEAYRFIDEL-------PIK-STP 394 (558)
Q Consensus 327 ~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~-~~~ 394 (558)
..|..|...|.-.|+++.|+...+.-. +.+|-. .....+..|.+++.-.|+++.|.+.|+.- +.+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 345556666666777887776554322 112221 12345667777777788888887777653 211 133
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccC------CCCcccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELD------DSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
.+..+|.++|.-..++++|+.++.+-+.+- .....++.+|+.+|...|..++|..+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 456677777877778888888877754432 2223567788888888888888877765543
No 185
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.32 E-value=0.0025 Score=59.48 Aligned_cols=129 Identities=13% Similarity=0.123 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 036003 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR-AGRLDEAYRFIDEL--PIKSTPILWRTLLSS 403 (558)
Q Consensus 327 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~ 403 (558)
..|..++...-+.+..+.|..+|.+.++. -..+..+|......-.+ .++.+.|.++|+.. ....+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 35777888888888899999999999853 23345566666555334 56677799999997 344577889999999
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCc---ccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 404 CSSHNNLGLAKQVIERIFELDDSHG---GDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
+...++.+.|..+|++++..-+... ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998765543 47888999889999999999999888763
No 186
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.27 E-value=0.0072 Score=51.76 Aligned_cols=63 Identities=10% Similarity=0.221 Sum_probs=32.3
Q ss_pred HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHchh
Q 036003 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD--EITFLGLLYACSHTGLVDEGWNYFYSMRD 354 (558)
Q Consensus 292 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 354 (558)
..|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555666666666665554321111 13444555555555555555555555543
No 187
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.26 E-value=0.059 Score=49.06 Aligned_cols=52 Identities=12% Similarity=0.029 Sum_probs=23.5
Q ss_pred HHHHHCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 036003 299 VAYATHGQGHKSILMFEEMMKA--QVSPDEITFLGLLYACSHTGLVDEGWNYFY 350 (558)
Q Consensus 299 ~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 350 (558)
.-|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.+...
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3444555555555555555442 111122334444455555555555544443
No 188
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.25 E-value=0.0017 Score=55.88 Aligned_cols=105 Identities=11% Similarity=0.146 Sum_probs=65.3
Q ss_pred CCCChhHHHHHHHHhhcC--CCCCCHHHHHHHHccCCC----CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCc
Q 036003 49 LQNDLNVLTKLINFCTQN--PTTSSMEHAHLLFDRIPE----PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDD 122 (558)
Q Consensus 49 ~~~~~~~~~~li~~~~~~--~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 122 (558)
-..+..++..+|..|.+. +..|.++-....+..|.+ .|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F-------- 112 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF-------- 112 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh--------
Confidence 346667777777766654 223555555555555543 566677777766654 2221 111111111
Q ss_pred ccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 036003 123 YSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174 (558)
Q Consensus 123 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 174 (558)
-.. ..+.+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 113 ----------~hy-p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ----------MHY-PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----------ccC-cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111 15678899999999999999999999999999876655
No 189
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.24 E-value=0.29 Score=49.55 Aligned_cols=134 Identities=15% Similarity=0.067 Sum_probs=64.6
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCC-----CcchHHHHHHHHHHCCCccHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP-----CVVSYNAIITAYARSSRPNEALSL 212 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~ 212 (558)
|.+++|++++-++-++. ..+..+.+.||+-...++++.-... -..+|+.+...+.....|++|.+.
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777776665443 2345555566666665555543220 112344444444444444444444
Q ss_pred HHHHHH---------------------CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 036003 213 FRELQE---------------------RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271 (558)
Q Consensus 213 ~~~m~~---------------------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 271 (558)
|..-.. ..++-+....-.+...+...|.-++|.+.+-+- +.+ .+-+..+.
T Consensus 819 Y~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~p------kaAv~tCv 889 (1189)
T KOG2041|consen 819 YSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---SLP------KAAVHTCV 889 (1189)
T ss_pred HHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc---cCc------HHHHHHHH
Confidence 332210 112334444455555666666666655544321 111 12344555
Q ss_pred hcCCHHHHHHHHhccCCC
Q 036003 272 KCGRLDDAVSVFDNMSGK 289 (558)
Q Consensus 272 ~~g~~~~A~~~~~~~~~~ 289 (558)
..++|.+|.++-++..-|
T Consensus 890 ~LnQW~~avelaq~~~l~ 907 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQRFQLP 907 (1189)
T ss_pred HHHHHHHHHHHHHhccch
Confidence 556666666665555444
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.20 E-value=0.001 Score=47.08 Aligned_cols=65 Identities=12% Similarity=0.180 Sum_probs=54.2
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHccCC
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHN-NLGLAKQVIERIFELDD 425 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 425 (558)
+...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567888888899999999999999887 3344 5678888999999999 79999999999998876
No 191
>PRK15331 chaperone protein SicA; Provisional
Probab=97.19 E-value=0.0047 Score=50.96 Aligned_cols=89 Identities=17% Similarity=0.081 Sum_probs=76.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChH
Q 036003 368 MVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWE 445 (558)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 445 (558)
..--+-..|++++|..+|.-+ -. .-+..-|..|..++...+++++|...|..+..++++++..+...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344456789999999999887 21 2356678888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 036003 446 DVDYLRKLMKD 456 (558)
Q Consensus 446 ~A~~~~~~m~~ 456 (558)
.|...|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998876
No 192
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.18 E-value=0.013 Score=48.22 Aligned_cols=89 Identities=6% Similarity=-0.031 Sum_probs=54.8
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 036003 266 LIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342 (558)
Q Consensus 266 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 342 (558)
+...+...|++++|..+|+.+..- +..-|-.|..++...|++++|+..|........ -|...+-.+..++...|+.
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence 444455666666666666655422 444566666666666777777777776666432 2445666666666777777
Q ss_pred HHHHHHHHHchhh
Q 036003 343 DEGWNYFYSMRDK 355 (558)
Q Consensus 343 ~~a~~~~~~~~~~ 355 (558)
+.|.+.|+.....
T Consensus 120 ~~A~~aF~~Ai~~ 132 (157)
T PRK15363 120 CYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666654
No 193
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.17 E-value=0.016 Score=58.94 Aligned_cols=135 Identities=10% Similarity=0.018 Sum_probs=97.7
Q ss_pred CCCCCHHHHHHHHHHHHcc-----CChHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHhhc--------CCHHHHHHHHH
Q 036003 321 QVSPDEITFLGLLYACSHT-----GLVDEGWNYFYSMRDKYGIVPG-IKHYGCMVDLLGRA--------GRLDEAYRFID 386 (558)
Q Consensus 321 g~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~--------g~~~~A~~~~~ 386 (558)
+.+.+...|...+++.... +....|..+|++..+ ..|+ ...|..+..++... ++...+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3556778888888875443 337789999999985 3554 44555544444322 22344555555
Q ss_pred hC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036003 387 EL----PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 387 ~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (558)
+. ....++..|..+.-.....|++++|...++++++++| +...|..++.+|...|+.++|.+.+++....+.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 43 1233557788777777778999999999999999998 578999999999999999999999998876543
No 194
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.14 E-value=0.19 Score=45.72 Aligned_cols=66 Identities=12% Similarity=0.062 Sum_probs=42.6
Q ss_pred CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHH-HH---HHHHHHHhccCChHHHHHHHHHHHHhCC
Q 036003 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV-TM---LSALSSCALLGSLDLGKWIHEYIKKYGL 256 (558)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 256 (558)
+...+-.....+.+.|++++|.+.|+++... -|+.. .. ..+..++.+.+++++|...+++..+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 3333434555567778888888888888775 33332 21 3455667778888888888887776643
No 195
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.14 E-value=0.09 Score=52.98 Aligned_cols=189 Identities=13% Similarity=0.083 Sum_probs=97.5
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----CHHhHHHHHHHHHHCCChHHHHH
Q 036003 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-----DTQAWSAMIVAYATHGQGHKSIL 312 (558)
Q Consensus 238 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~ 312 (558)
-|.+++|++++-.+-+++ .-+..+.+.|+|-...++++.-... -..+|+.+...++....+++|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666666655443 2345566666666666666543322 13456666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 036003 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392 (558)
Q Consensus 313 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 392 (558)
.|..-.. ....+.++.+...+++-+.+-..+ +-+....-.+.+++.+.|.-++|.+.+-+-. .|
T Consensus 818 yY~~~~~---------~e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s-~p 881 (1189)
T KOG2041|consen 818 YYSYCGD---------TENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRS-LP 881 (1189)
T ss_pred HHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhcc-Cc
Confidence 6654321 113445555555555444433333 2344455556666666666666666665543 12
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC-----------CcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS-----------HGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
. ..+.+|...+++.+|.++.++..-.... ...-..--+..+.++|++-+|.+++.+|.+
T Consensus 882 k-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 882 K-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 1 2344455555555555554442100000 000122334556666776666666666643
No 196
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.13 E-value=0.00063 Score=48.01 Aligned_cols=49 Identities=16% Similarity=0.166 Sum_probs=23.9
Q ss_pred ccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
..|++++|.++|+.+... .+-+...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555555555555442 2224444445555555555555555555555
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.11 E-value=0.0043 Score=56.84 Aligned_cols=95 Identities=9% Similarity=0.033 Sum_probs=65.9
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc---ccHHhH
Q 036003 363 KHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG---GDYVIL 434 (558)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l 434 (558)
..|..-+..+.+.|++++|...|+.+ ...|+ +..+.-+..+|...|++++|...|+++++..|.++ .++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555555555667888888777776 22333 24566677788888888888888888887776654 345556
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q 036003 435 SNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 435 ~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
+.+|...|++++|.++++++.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777888888888888877653
No 198
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.023 Score=50.14 Aligned_cols=140 Identities=7% Similarity=0.024 Sum_probs=102.9
Q ss_pred chHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH-----H
Q 036003 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT-----A 265 (558)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~ 265 (558)
...+.++..+.-.|.+.-.+..+++.++...+.++.....+.+.-.+.||.+.|..+|+.+.+..-..+....+ .
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34566777777788888899999999887666678888888999999999999999999887654334433333 3
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036003 266 LIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332 (558)
Q Consensus 266 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 332 (558)
....|.-.+++..|...|+++... |+..-|.-.-+..-.|+..+|++.++.|.+. .|...+-+++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 344566778888888888887644 5666666666666678889999999999884 4555444433
No 199
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.11 E-value=0.0048 Score=53.16 Aligned_cols=96 Identities=7% Similarity=0.099 Sum_probs=64.6
Q ss_pred HHHhcc--CCCCcchHHHHHHHHHH-----CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------------
Q 036003 180 RIFENI--SEPCVVSYNAIITAYAR-----SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL-------------- 238 (558)
Q Consensus 180 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-------------- 238 (558)
..|+.. ...+..+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 23555566666666554 355666666677777777777777887777766442
Q ss_pred --CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036003 239 --GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275 (558)
Q Consensus 239 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 275 (558)
.+-+-|.+++++|...|+-||..++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1345677888888888888888888888888866553
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.05 E-value=0.025 Score=44.69 Aligned_cols=106 Identities=18% Similarity=0.117 Sum_probs=62.1
Q ss_pred HHHHHHHCCCccHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC--CchhHHHHHHHHHH
Q 036003 196 IITAYARSSRPNEALSLFRELQERNLKPT--DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD--KYVKVNTALIDMHA 271 (558)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 271 (558)
+..++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..+++........ .+......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556677888888888888877775544 234556667777778888888887777654211 12222222334556
Q ss_pred hcCCHHHHHHHHhccCCCCHHhHHHHHHHH
Q 036003 272 KCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301 (558)
Q Consensus 272 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 301 (558)
..|+.++|.+.+-....++...|..-|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777776665544433333444333333
No 201
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.04 E-value=0.0025 Score=59.60 Aligned_cols=257 Identities=12% Similarity=0.073 Sum_probs=153.7
Q ss_pred HHHhcCCCchHHHHHHHHhHHCCCCCCcc----cHHHHHHHHHhcCcccHHHHHHHHHHHHH--h--CC-CChHHHHHHH
Q 036003 95 RGYSRSKTPIRAIFLFVELLNSGLLPDDY----SFPSLLKACACVGAEALEEGKQLHCFAIK--L--GL-NSNLYVCTTL 165 (558)
Q Consensus 95 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~~~a~~~~~~~~~--~--g~-~~~~~~~~~l 165 (558)
.-+++.|+.+..+.+|+...+.|-. |.. .|..|-++|... +++++|.+++..=+. . |- .-.......|
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL--~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYL--KDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhH--hhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 4578889999999999988887644 433 345555666666 788888887643221 1 10 0122233445
Q ss_pred HHHHHhCCChHHHHHHHhccCC---------CCcchHHHHHHHHHHCCCc--------------------cHHHHHHHHH
Q 036003 166 INLYAECSDVEAARRIFENISE---------PCVVSYNAIITAYARSSRP--------------------NEALSLFREL 216 (558)
Q Consensus 166 l~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m 216 (558)
.+.+--.|.+++|.....+-.. ....++..+...|...|+. +.|.++|.+=
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 5555666777776544332211 1223444466666655432 2344444331
Q ss_pred ----HHCCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHH----HhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 036003 217 ----QERNLK-PTDVTMLSALSSCALLGSLDLGKWIHEYIK----KYGLD-KYVKVNTALIDMHAKCGRLDDAVSVFDNM 286 (558)
Q Consensus 217 ----~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 286 (558)
.+.|-. .--..|..|.+.|.-.|+++.|....+.-. +.|-. ..-..+..|.+++.-.|+++.|.+.|+..
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 111100 011234455555566788999887766433 22321 12345677888999999999999988764
Q ss_pred C-------CC--CHHhHHHHHHHHHHCCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHc
Q 036003 287 S-------GK--DTQAWSAMIVAYATHGQGHKSILMFEEMMK----AQ-VSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352 (558)
Q Consensus 287 ~-------~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 352 (558)
. .+ ...+..+|...|.-..++++|+.++.+-.. .+ ..-....+.+|..++...|..++|+.+.+.-
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 2 23 344566778888888889999888876443 11 1224567888999999999999988776654
Q ss_pred hh
Q 036003 353 RD 354 (558)
Q Consensus 353 ~~ 354 (558)
.+
T Consensus 342 l~ 343 (639)
T KOG1130|consen 342 LR 343 (639)
T ss_pred HH
Confidence 43
No 202
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.99 E-value=0.026 Score=44.59 Aligned_cols=92 Identities=16% Similarity=0.168 Sum_probs=58.3
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHh
Q 036003 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDE--ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP-GIKHYGCMVDLLG 373 (558)
Q Consensus 297 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~ 373 (558)
+..++-..|+.++|+.+|++....|..... ..+-.+...+...|++++|..+|+.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445666778888888888888887765442 3555666777778888888888887776421100 2222223344566
Q ss_pred hcCCHHHHHHHHHhC
Q 036003 374 RAGRLDEAYRFIDEL 388 (558)
Q Consensus 374 ~~g~~~~A~~~~~~~ 388 (558)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 777777777766543
No 203
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.97 E-value=0.35 Score=45.81 Aligned_cols=105 Identities=17% Similarity=0.145 Sum_probs=57.1
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 036003 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345 (558)
Q Consensus 266 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 345 (558)
.+.-+...|+...|.++-.+..-+|-.-|...+.+++..++|++-..+... +-++..|..++.+|.+.|...+|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHH
Confidence 344445556666666666666556666666666666666666655543321 11224455566666666666666
Q ss_pred HHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 036003 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387 (558)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 387 (558)
..+..++. +..-+..|.++|++.+|.+.--+
T Consensus 257 ~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 257 SKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 65555421 13345555666666666554433
No 204
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.95 E-value=0.14 Score=43.05 Aligned_cols=113 Identities=21% Similarity=0.236 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC----CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHH
Q 036003 264 TALIDMHAKCGRLDDAVSVFDNMSG----KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ---VSPDEITFLGLLYAC 336 (558)
Q Consensus 264 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~ 336 (558)
-.|..++.+.|+..+|...|++... .|....-.+.++....+++..|...++++.+.. -.|| +...+.+.+
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~l 170 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHLLFARTL 170 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chHHHHHHH
Confidence 3344444455555555554444332 244444444444445555555555555554421 1222 222344445
Q ss_pred HccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 036003 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381 (558)
Q Consensus 337 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 381 (558)
...|++.+|+..|+.... .-|+...-......+.++|+.++|
T Consensus 171 aa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 171 AAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHH
Confidence 555555555555555543 233333333334444555544444
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.92 E-value=0.097 Score=52.30 Aligned_cols=84 Identities=15% Similarity=0.262 Sum_probs=41.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHh-------------
Q 036003 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA------------- 293 (558)
Q Consensus 227 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------- 293 (558)
+...+...+.+...+..|-++|..|-+. ..++......++|++|.++-+..++--...
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~Dr 819 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDR 819 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhh
Confidence 3333333344444555555555554332 235555556666666666655554321111
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHH
Q 036003 294 WSAMIVAYATHGQGHKSILMFEEMMK 319 (558)
Q Consensus 294 ~~~li~~~~~~~~~~~a~~~~~~m~~ 319 (558)
+...-.+|.+.|+-.+|..+++++..
T Consensus 820 FeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 820 FEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 11122345566666777777766654
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.097 Score=46.42 Aligned_cols=133 Identities=14% Similarity=0.032 Sum_probs=74.2
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChh-----HHHHH
Q 036003 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK-----HYGCM 368 (558)
Q Consensus 294 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l 368 (558)
.+.++..+.-.|.+.-.+.++.+.++...+-+....+.|.+.-.+.|+.+.|...|+...+. .-..+.. +....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhh
Confidence 44555555566667677777777776554445666666666667777777777777765543 2222222 22222
Q ss_pred HHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 036003 369 VDLLGRAGRLDEAYRFIDELPI--KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 427 (558)
...|.-++++..|...++++.. ..++...|.-.-+..-.|+...|.+.++.+++..|..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 3345555666666666666521 1233333333333334566666666666666666553
No 207
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.66 Score=47.62 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=90.3
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 036003 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400 (558)
Q Consensus 321 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 400 (558)
|..-...+.+--+.-+...|+-.+|.++-.+.+ .||...|-.-+.+++..+++++-+++-+..+ .+.-|.-.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhH
Confidence 334444566666777788899999988877665 4788899999999999999999888887764 24566678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHH
Q 036003 401 LSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKL 453 (558)
Q Consensus 401 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 453 (558)
..+|.+.|+.++|.+++-+.-. +.-...+|.+.|++.+|.++--+
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 8899999999999998876532 22577889999999998886543
No 208
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.87 E-value=0.0027 Score=52.88 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHH-----hCCCccCC
Q 036003 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK-----DRGVLKVP 463 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~~~~ 463 (558)
....++..+...|++++|.+++++++..+|-+...|..++.+|...|+..+|.+.|+++. +.|+.|++
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 455677788899999999999999999999999999999999999999999999998874 46888755
No 209
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.86 E-value=0.42 Score=45.08 Aligned_cols=273 Identities=14% Similarity=0.110 Sum_probs=160.7
Q ss_pred CCChHHHHHHHhccCC---CCcchHHHHHHH--HHHCCCccHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCChHHH
Q 036003 172 CSDVEAARRIFENISE---PCVVSYNAIITA--YARSSRPNEALSLFRELQERNLKPTDV--TMLSALSSCALLGSLDLG 244 (558)
Q Consensus 172 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a 244 (558)
.||-..|.+.-.+..+ .|....-.++.+ -.-.|+++.|.+-|+.|... |... -+..|.-...+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 3555555555444331 333333333322 23357777777777777652 2222 223333444566777777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC-----CCCHHh--HHHHHHHHH---HCCChHHHHHHH
Q 036003 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS-----GKDTQA--WSAMIVAYA---THGQGHKSILMF 314 (558)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~--~~~li~~~~---~~~~~~~a~~~~ 314 (558)
.++-+..-..-.. -...+...+...+..|+|+.|+++++.-. ++++.- -..|+.+-+ -..+...|...-
T Consensus 174 r~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 7777766554322 23445667777788888888888877543 223221 122222211 123455555555
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHH----HHHHHhCC
Q 036003 315 EEMMKAQVSPDEI-TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA----YRFIDELP 389 (558)
Q Consensus 315 ~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~~~ 389 (558)
.+..+ +.||.. .-.....++.+.|+..++-.+++.+-+. .|....+...+ +.+.|+.... .+-++.|+
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~slk 325 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDTALDRLKRAKKLESLK 325 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhcC
Confidence 55544 566653 2334456788999999999999988753 55555543333 3455543222 12233343
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhc-CChHHHHHHHHHHHhC
Q 036003 390 IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA-GRWEDVDYLRKLMKDR 457 (558)
Q Consensus 390 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 457 (558)
+.+..+.-.+..+....|++..|..--+.+....|.. ..|..|.++-... |+-.++...+-+..+.
T Consensus 326 -~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 326 -PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred -ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 3355666777788888999999988888888877763 6788888776554 8988888888776654
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.85 E-value=0.0049 Score=59.47 Aligned_cols=63 Identities=14% Similarity=-0.085 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcc---cHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG---DYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
...|+.+..+|...|++++|+..|+++++++|++.. +|+.++.+|...|+.++|...+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555543 255555555555555555555555544
No 211
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.44 Score=45.34 Aligned_cols=85 Identities=12% Similarity=0.019 Sum_probs=45.9
Q ss_pred HHHCCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHhhcC
Q 036003 301 YATHGQGHKSILMFEEMMKA---QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG-IKHYGCMVDLLGRAG 376 (558)
Q Consensus 301 ~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g 376 (558)
..+.|.+.+|.+.|.+.+.. ...|+...|........+.|+.++|+.--++..+ +.+. ...|..-..++...+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHH
Confidence 44566677777777766652 2334445555555566667777777666555542 2211 112222233444556
Q ss_pred CHHHHHHHHHhC
Q 036003 377 RLDEAYRFIDEL 388 (558)
Q Consensus 377 ~~~~A~~~~~~~ 388 (558)
++++|.+-|++.
T Consensus 336 ~~e~AV~d~~~a 347 (486)
T KOG0550|consen 336 KWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHH
Confidence 666666666654
No 212
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.76 E-value=0.062 Score=47.54 Aligned_cols=161 Identities=14% Similarity=0.145 Sum_probs=82.3
Q ss_pred HHHhcCCHHHHHHHHhccCCC------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHcc-
Q 036003 269 MHAKCGRLDDAVSVFDNMSGK------DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE--ITFLGLLYACSHT- 339 (558)
Q Consensus 269 ~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~- 339 (558)
.+...|++++|.+.|+.+... -..+.-.++.++.+.|+++.|...++++.+. -|+. ..+...+.+.+..
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHH
Confidence 344555555565555555421 1223445566666667777777777766653 2222 1222222222111
Q ss_pred ------------CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 036003 340 ------------GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407 (558)
Q Consensus 340 ------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (558)
+...+|...| ..++.-|=......+|...+..+... -...--.+...|.+.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~----------------~~li~~yP~S~y~~~A~~~l~~l~~~-la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEF----------------EELIKRYPNSEYAEEAKKRLAELRNR-LAEHELYIARFYYKR 154 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHH----------------HHHHHH-TTSTTHHHHHHHHHHHHHH-HHHHHHHHHHHHHCT
T ss_pred hCccchhcccChHHHHHHHHHH----------------HHHHHHCcCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHc
Confidence 1112233333 33334444444445554444443100 001112256678889
Q ss_pred CCHHHHHHHHHHHHccCCCCcc---cHHhHHHHHHhcCChHHHH
Q 036003 408 NNLGLAKQVIERIFELDDSHGG---DYVILSNLCARAGRWEDVD 448 (558)
Q Consensus 408 g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~ 448 (558)
|.+..|..-++.+++.-|+++. +...++.+|.+.|..+.|.
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999999999998887654 4667888899998877544
No 213
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.75 E-value=0.00081 Score=39.54 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=30.5
Q ss_pred HHHHHHccCCCCcccHHhHHHHHHhcCChHHHH
Q 036003 416 VIERIFELDDSHGGDYVILSNLCARAGRWEDVD 448 (558)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 448 (558)
+|+++++++|+++.+|..|+.+|...|++++|.
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 368899999999999999999999999999986
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.75 E-value=0.18 Score=48.28 Aligned_cols=72 Identities=13% Similarity=0.114 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCC-------CHHhHHHHHHHHHH---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036003 265 ALIDMHAKCGRLDDAVSVFDNMSGK-------DTQAWSAMIVAYAT---HGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334 (558)
Q Consensus 265 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 334 (558)
.++-.|....+++...++++.+... ....-....-++-+ .|+.++|+.++..+....-.++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444566777777777777776643 11112223334445 6777777777777555555666667766665
Q ss_pred HH
Q 036003 335 AC 336 (558)
Q Consensus 335 ~~ 336 (558)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.69 E-value=0.0029 Score=46.02 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccC----CC---CcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELD----DS---HGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
.+++.+...|...|++++|+..|+++++.. +. ...++..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467777888888888888888888877542 22 234677888888888888888888887643
No 216
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.68 E-value=0.0025 Score=40.20 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHH
Q 036003 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSN 436 (558)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 436 (558)
.+|..+..+|...|++++|+++|+++++..|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788899999999999999999999999999888776653
No 217
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.029 Score=53.04 Aligned_cols=63 Identities=10% Similarity=-0.027 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
.++..+..++.+.+++.+|++.-.++++.+|+|..+...-+.+|...|+++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 466778888899999999999999999999999999999999999999999999999999873
No 218
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.61 E-value=0.043 Score=50.36 Aligned_cols=102 Identities=11% Similarity=0.038 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----CHHHHHHH
Q 036003 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP-GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS----TPILWRTL 400 (558)
Q Consensus 327 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l 400 (558)
..|...+....+.|++++|...|+.+.+.+.-.+ ....+-.+...|...|++++|...|+.+ ...| ....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455544444556778888877877776421111 1245566777778888888888887776 1122 23455556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 401 LSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 401 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
+..+...|+.++|...|+++++..|.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 6777788888888888888888888754
No 219
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.35 Score=42.59 Aligned_cols=200 Identities=11% Similarity=0.033 Sum_probs=111.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC--HHhHHHHHHHHHHC
Q 036003 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD--TQAWSAMIVAYATH 304 (558)
Q Consensus 227 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~ 304 (558)
.|.....+|....++++|...+.+..+. .+.+...|. ....++.|.-+.+++.+-+ +..|+--...|..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3444555667777777777766655432 111211111 1123344444445444332 23355566777778
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCC----CCChhHHHHHHHHHhhcCCHHH
Q 036003 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGI----VPGIKHYGCMVDLLGRAGRLDE 380 (558)
Q Consensus 305 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~ 380 (558)
|.++.|-..+++.-+. ....++++|+++|++...-... ..-...+..+.+.+.+..++++
T Consensus 105 GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred CCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 8777776666654431 1233444444544444331110 0112344455566777788888
Q ss_pred HHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHccC----CCCcccHHhHHHHHHhcCChHHHH
Q 036003 381 AYRFIDELP-------IKSTP-ILWRTLLSSCSSHNNLGLAKQVIERIFELD----DSHGGDYVILSNLCARAGRWEDVD 448 (558)
Q Consensus 381 A~~~~~~~~-------~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~ 448 (558)
|-..|.+-. .-++. ..|...|-.+....++..|++.++...+.+ +.+..+...|+.+| ..|+.+++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 766665541 12232 234555556666779999999999977654 55667788888887 567888777
Q ss_pred HHH
Q 036003 449 YLR 451 (558)
Q Consensus 449 ~~~ 451 (558)
+++
T Consensus 248 kvl 250 (308)
T KOG1585|consen 248 KVL 250 (308)
T ss_pred HHH
Confidence 654
No 220
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.57 E-value=0.0076 Score=43.08 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=48.8
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccH
Q 036003 369 VDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431 (558)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 431 (558)
-..|.+.+++++|.++++.+ ...| ++..|......+...|++++|.+.|+++++..|.++...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 35677888888888888887 3344 556777788888889999999999999998888765443
No 221
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.55 E-value=0.81 Score=44.13 Aligned_cols=409 Identities=13% Similarity=0.080 Sum_probs=214.7
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCc---ccHHHHHHHHhcCCCchHHHHHHHHhH
Q 036003 38 KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDI---VLFNTMARGYSRSKTPIRAIFLFVELL 114 (558)
Q Consensus 38 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~ 114 (558)
-++.+.+.+ -+.|+.+|-.||..|... +.+++.+++++.|..|-+ .+|..-|++-....+++....+|.+.+
T Consensus 29 lrLRerIkd--NPtnI~S~fqLiq~~~tq---~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 29 LRLRERIKD--NPTNILSYFQLIQYLETQ---ESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred HHHHHHhhc--CchhHHHHHHHHHHHhhh---hhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 344444433 467789999999999999 999999999999998654 468888888888889999999999988
Q ss_pred HCCCCCCcccHHHHHHHHHhcC---cc-cHHHHHHHHHHHHH-hCCCCh-HHHHHHHHHHH---HhCC------ChHHHH
Q 036003 115 NSGLLPDDYSFPSLLKACACVG---AE-ALEEGKQLHCFAIK-LGLNSN-LYVCTTLINLY---AECS------DVEAAR 179 (558)
Q Consensus 115 ~~g~~p~~~~~~~ll~~~~~~~---~~-~~~~a~~~~~~~~~-~g~~~~-~~~~~~ll~~~---~~~g------~~~~A~ 179 (558)
..... ...|..-+.-..+.. .| .-....+.|+-.+. .++.|- ...|+..+..+ -..| ++|...
T Consensus 104 ~k~l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR 181 (660)
T COG5107 104 KKSLN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIR 181 (660)
T ss_pred hhhcc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 76444 445555554433321 11 11112233333332 234442 23344433322 2223 344555
Q ss_pred HHHhccCC-C---------CcchHHHHHHHHHH---CC----CccHHHHHHHHHHH--CCCCC----CHHHHHHHHH---
Q 036003 180 RIFENISE-P---------CVVSYNAIITAYAR---SS----RPNEALSLFRELQE--RNLKP----TDVTMLSALS--- 233 (558)
Q Consensus 180 ~~~~~~~~-~---------~~~~~~~li~~~~~---~g----~~~~A~~~~~~m~~--~~~~p----~~~~~~~ll~--- 233 (558)
..+.++.. | |-..|..=+..... .| -+-.|.+.+++... .|+.. +..+++.+-+
T Consensus 182 ~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~ 261 (660)
T COG5107 182 NGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSD 261 (660)
T ss_pred HHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccccc
Confidence 66666654 1 11111111111100 01 12234444444432 12211 2222222111
Q ss_pred --------HHhcc-----CC-hHH-HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--C------
Q 036003 234 --------SCALL-----GS-LDL-GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK--D------ 290 (558)
Q Consensus 234 --------~~~~~-----~~-~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~------ 290 (558)
--... |+ ..+ .--++++.... +.....+|--.-.-+...++-+.|+...+.-.+. .
T Consensus 262 S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~ls 340 (660)
T COG5107 262 SNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLS 340 (660)
T ss_pred chhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHH
Confidence 00000 00 000 01111111111 1112222222222334455666666655543221 1
Q ss_pred ---------HH---hHHHHHHHHHH---CCChHHHHHH------HHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 036003 291 ---------TQ---AWSAMIVAYAT---HGQGHKSILM------FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYF 349 (558)
Q Consensus 291 ---------~~---~~~~li~~~~~---~~~~~~a~~~------~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 349 (558)
.. +|..++..+.+ .++.+.+... ..++.-....--...|...+++..+..-++.|..+|
T Consensus 341 e~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F 420 (660)
T COG5107 341 EYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLF 420 (660)
T ss_pred HHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 01 12222222221 1111111110 111110001112345667777778888899999999
Q ss_pred HHchhhcC-CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 350 YSMRDKYG-IVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTPIL-WRTLLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 350 ~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
-++.+. + +.+++..+++++.-++ .|+...|..+|+-- ..-||... -+-.+..+...++-..|..+|+..++.-..
T Consensus 421 ~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~ 498 (660)
T COG5107 421 IKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEK 498 (660)
T ss_pred HHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHH
Confidence 999886 5 6678888899988776 57788899999864 33455544 355677778889999999999976654322
Q ss_pred C--cccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 427 H--GGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 427 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
+ ...|..++..-..-|+...+..+=++|..
T Consensus 499 ~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 499 TQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred hhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 2 35688888887888888777666555543
No 222
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.47 E-value=0.043 Score=43.82 Aligned_cols=50 Identities=10% Similarity=0.150 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 036003 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371 (558)
Q Consensus 322 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 371 (558)
..|+..+..+++.+|+..|++..|.++++.+.+.++++.+..+|..|+.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 56777777777888877788888888888877777777777777777654
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.43 E-value=0.0054 Score=44.58 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=40.3
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 036003 363 KHYGCMVDLLGRAGRLDEAYRFIDEL-------P-IKST-PILWRTLLSSCSSHNNLGLAKQVIERIFEL 423 (558)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 423 (558)
.+|+.+...|...|++++|++.|++. + ..|+ ..++..+..++...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45566666677777777776666654 1 1122 356777888888888888888888887653
No 224
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.32 E-value=1.1 Score=43.28 Aligned_cols=117 Identities=14% Similarity=0.115 Sum_probs=73.0
Q ss_pred HHHCCC-hHHHHHHHHHHHHCCCCCC-HHHHHHH----HHHHHc---cCChHHHHHHHHHchhhcCCCCC----hhHHHH
Q 036003 301 YATHGQ-GHKSILMFEEMMKAQVSPD-EITFLGL----LYACSH---TGLVDEGWNYFYSMRDKYGIVPG----IKHYGC 367 (558)
Q Consensus 301 ~~~~~~-~~~a~~~~~~m~~~g~~p~-~~~~~~l----l~~~~~---~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 367 (558)
+.+.|. -++|+++++...+ +.|. ...-+.+ =.+|.+ ...+.+-..+-+-+.+ .|++|- ...-|.
T Consensus 389 lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e-~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITE-VGLTPITISEEEIANF 465 (549)
T ss_pred HHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-cCCCcccccHHHHHHH
Confidence 344555 7788888888877 3333 2222222 223322 2234444444444444 377763 344555
Q ss_pred HHHH--HhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036003 368 MVDL--LGRAGRLDEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420 (558)
Q Consensus 368 li~~--~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 420 (558)
|.++ +...|++.++.-.-.-+ .+.|++.+|+.++-+.....++++|..++..+
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 5544 45678888886554443 66789999999999999999999999988765
No 225
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.31 E-value=0.7 Score=40.83 Aligned_cols=59 Identities=17% Similarity=0.063 Sum_probs=31.3
Q ss_pred HHHHHHHCCCccHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 036003 196 IITAYARSSRPNEALSLFRELQERNLK--PTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254 (558)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 254 (558)
....+.+.|++.+|.+.|+.+...-.. --......++.++.+.|+++.|...++...+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455666677777777666654111 11223344555666666666666666666554
No 226
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.18 Score=45.97 Aligned_cols=102 Identities=9% Similarity=-0.042 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhc---CCHHHHHHHHHhC-CCCC-CHHHHHH
Q 036003 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA---GRLDEAYRFIDEL-PIKS-TPILWRT 399 (558)
Q Consensus 325 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~-~~~~-~~~~~~~ 399 (558)
|...|..|...|...|+++.|..-|....+ -..++...+..+..++..+ ....++..+|+++ ...| |+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 667888888888888888888888888875 3344566666666665433 2456788888887 4444 5566677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 400 LLSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 400 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
|...+...|++.+|...|+.|++..|++.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 77888999999999999999999887763
No 227
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=1.8 Score=44.68 Aligned_cols=303 Identities=13% Similarity=0.040 Sum_probs=158.7
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC---hHHHHHHHhccCC--CCcchHHHHHHHHHH
Q 036003 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD---VEAARRIFENISE--PCVVSYNAIITAYAR 202 (558)
Q Consensus 128 ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~--~~~~~~~~li~~~~~ 202 (558)
++.-+... +.+..|.++-..+...-.. ...+|.....-+.+..+ -+-+..+-+++.. ....+|..+..-.-.
T Consensus 443 vi~Rl~~r--~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 443 VIDRLVDR--HLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQ 519 (829)
T ss_pred hhHHHHhc--chhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHh
Confidence 44455555 6677777766554321111 14555555555555532 2333444444444 445567777777777
Q ss_pred CCCccHHHHHHHHHHHCCCC----CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 036003 203 SSRPNEALSLFRELQERNLK----PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278 (558)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 278 (558)
.|+.+.|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-++...- +.. .......+.-.
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s------~l~~~l~~~p~ 590 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRS------SLFMTLRNQPL 590 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHH------HHHHHHHhchh
Confidence 77777777766542221100 011123333444455555555555544443321 000 00111122233
Q ss_pred HHHHHhccCCC-CHHhHHHHHHHHHHCCChHHHHHHHH--HHH----HCCCCCCHHHHHHHHHHHHccCC----------
Q 036003 279 AVSVFDNMSGK-DTQAWSAMIVAYATHGQGHKSILMFE--EMM----KAQVSPDEITFLGLLYACSHTGL---------- 341 (558)
Q Consensus 279 A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~--~m~----~~g~~p~~~~~~~ll~~~~~~g~---------- 341 (558)
|..+|....+. |..+ +..+.+.++-.++..-|. ... ..|..|+. .....+|.+...
T Consensus 591 a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 591 ALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred hhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHH
Confidence 33333332221 1110 111122222222222221 100 11233333 233334443332
Q ss_pred hHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036003 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421 (558)
Q Consensus 342 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (558)
...-+++.+.+..+++..-.--+.+--+.-+...|+..+|.++-.+.+ -||-..|--=+.++...+++++-+++-+...
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~~kweeLekfAkskk 742 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADIKKWEELEKFAKSKK 742 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhhhhHHHHHHHHhccC
Confidence 222334445555555554444556666777888899999999999997 4687788778889999999988776654332
Q ss_pred ccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 422 ELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 422 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
+|.-|.-...+|.+.|+.+||.+++-+..
T Consensus 743 -----sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 743 -----SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred -----CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 25778999999999999999999987654
No 228
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.20 E-value=0.73 Score=44.26 Aligned_cols=73 Identities=16% Similarity=0.124 Sum_probs=50.4
Q ss_pred HHHHHHHHhCCChHHHHHHHhccCCC-C------cchHHHHHHHHHH---CCCccHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036003 163 TTLINLYAECSDVEAARRIFENISEP-C------VVSYNAIITAYAR---SSRPNEALSLFRELQERNLKPTDVTMLSAL 232 (558)
Q Consensus 163 ~~ll~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 232 (558)
..++-.|....+++...++++.+... + ...-.....++.+ .|+.++|++++..+....-.+++.+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555688888899999999888762 1 1112234445566 788889999988866555677888887777
Q ss_pred HHH
Q 036003 233 SSC 235 (558)
Q Consensus 233 ~~~ 235 (558)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 665
No 229
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.076 Score=50.32 Aligned_cols=138 Identities=9% Similarity=-0.021 Sum_probs=98.1
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcC
Q 036003 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376 (558)
Q Consensus 297 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 376 (558)
-...|.+.|++..|...|++.... -. +.+.-+.++... ...+ -..++..|.-+|.+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~-~~~~--------k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKK-AEAL--------KLACHLNLAACYLKLK 271 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHH-HHHH--------HHHHhhHHHHHHHhhh
Confidence 355677777777777777776541 00 011111122211 1111 2236778888999999
Q ss_pred CHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHH-HHHHHH
Q 036003 377 RLDEAYRFIDEL-P-IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV-DYLRKL 453 (558)
Q Consensus 377 ~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~ 453 (558)
++.+|++..+.. . .++|+-....=..++...|+++.|...|++++++.|.|-.+-.-|+.+-.+..++.+. .++|..
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998886 2 2457777777789999999999999999999999999988888888887777776654 788888
Q ss_pred HHh
Q 036003 454 MKD 456 (558)
Q Consensus 454 m~~ 456 (558)
|-.
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 854
No 230
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.07 E-value=1.9 Score=43.58 Aligned_cols=162 Identities=16% Similarity=0.049 Sum_probs=107.1
Q ss_pred cHHHHHHHHhcCCCchHHHHHHHHhHHC-CCCCC-----cccHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCCChHH
Q 036003 89 LFNTMARGYSRSKTPIRAIFLFVELLNS-GLLPD-----DYSFPSLLKACACV--GAEALEEGKQLHCFAIKLGLNSNLY 160 (558)
Q Consensus 89 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~~~~~ll~~~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~ 160 (558)
....+++...-.||-+.+++++.+..+. |+.-. .-.|..++..++.. .....+.+.++++.+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 4555677777889999999988877553 23211 12444445444443 337888899999998876 35554
Q ss_pred HHHH-HHHHHHhCCChHHHHHHHhccCC-------CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036003 161 VCTT-LINLYAECSDVEAARRIFENISE-------PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232 (558)
Q Consensus 161 ~~~~-ll~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 232 (558)
.|.. -.+.+...|++++|.+.|++... -....+--+.-.+.-..+|++|.+.|..+.+.. ..+..+|..+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 4433 33567778999999999987553 222344556667778889999999999998764 34555666555
Q ss_pred HHH-hccCCh-------HHHHHHHHHHHH
Q 036003 233 SSC-ALLGSL-------DLGKWIHEYIKK 253 (558)
Q Consensus 233 ~~~-~~~~~~-------~~a~~~~~~~~~ 253 (558)
.+| ...++. ++|..++.++..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 444 355666 777777777653
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.02 E-value=0.046 Score=53.00 Aligned_cols=64 Identities=9% Similarity=0.026 Sum_probs=47.5
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTP----ILWRTLLSSCSSHNNLGLAKQVIERIFELD 424 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 424 (558)
+...++.+..+|.+.|++++|+..|++. ...|+. .+|..+..+|...|+.++|+..++++++..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4567777777888888888888888774 555653 347778888888888888888888887763
No 232
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.97 E-value=0.21 Score=40.41 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=43.3
Q ss_pred HHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCccc
Q 036003 370 DLLGRAGRLDEAYRFIDEL----PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430 (558)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 430 (558)
....+.|++++|.+.|+.+ +..+ ....--.++.+|.+.+++++|...+++.+++.|.++.+
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 3345677888888888777 2222 23455567788888888888888888888888877653
No 233
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.92 E-value=0.04 Score=49.22 Aligned_cols=117 Identities=11% Similarity=0.053 Sum_probs=83.2
Q ss_pred CCHHHHHHHHccCC--CCCcccHHHHHHHHhcC-----CCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcC------
Q 036003 70 SSMEHAHLLFDRIP--EPDIVLFNTMARGYSRS-----KTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG------ 136 (558)
Q Consensus 70 ~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------ 136 (558)
..+-..+..|...+ .+|-.+|-..+..+... +.++=....++.|.+.|+.-|..+|+.||+.+=+..
T Consensus 48 K~Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nv 127 (406)
T KOG3941|consen 48 KSLVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNV 127 (406)
T ss_pred ccccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHH
Confidence 34445566777766 57888888888877643 445556667888999999999999999998764432
Q ss_pred --------cccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCh-HHHHHHHhccC
Q 036003 137 --------AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDV-EAARRIFENIS 186 (558)
Q Consensus 137 --------~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~ 186 (558)
..+-+-+..++++|...|+-||..+-..|++++.+.+-. .+..++.-.|+
T Consensus 128 fQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 128 FQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 134456788888888888888888888888888776653 33344443343
No 234
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.88 E-value=0.66 Score=36.67 Aligned_cols=140 Identities=9% Similarity=0.082 Sum_probs=81.6
Q ss_pred HHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 036003 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381 (558)
Q Consensus 302 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 381 (558)
.-.|..++..++..+.... .+..-++.+|--....-+-+-..+.++.+-+-+.+.+- .....++.+|.+.|
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n----- 83 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRN----- 83 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhc-----
Confidence 3456777777777777653 24555666665555555556666666666543222221 11123344444433
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036003 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460 (558)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 460 (558)
.+.......+......|+-+.-.+++..+.+.+..++....-+..+|.+.|+..++.+++++.-+.|++
T Consensus 84 ----------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 84 ----------KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ----------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 233445566777888888888888888888766777788888999999999999999999988888874
No 235
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.84 E-value=2.3 Score=46.35 Aligned_cols=81 Identities=15% Similarity=0.037 Sum_probs=38.0
Q ss_pred HHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 036003 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGL 412 (558)
Q Consensus 333 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 412 (558)
+.+|...|++.+|..+..++.. +-.--..+-..|+.-+...++.-+|-++..+....|.. .+..+++...+++
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEE 1044 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHH
Confidence 4445555555555555444432 11111122245555566666666666666655322221 2233444445666
Q ss_pred HHHHHHHH
Q 036003 413 AKQVIERI 420 (558)
Q Consensus 413 a~~~~~~~ 420 (558)
|.++....
T Consensus 1045 Alrva~~~ 1052 (1265)
T KOG1920|consen 1045 ALRVASKA 1052 (1265)
T ss_pred HHHHHHhc
Confidence 65555444
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.96 Score=41.32 Aligned_cols=147 Identities=12% Similarity=0.023 Sum_probs=87.6
Q ss_pred HHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCH
Q 036003 299 VAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378 (558)
Q Consensus 299 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 378 (558)
......|++.+|..+|.......-. +...-..+..+|...|+.+.|..++..+-.. --........+-|..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 3455667777777777777664222 2344556677777888888888887776542 1111112222334455555555
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CCCcccHHhHHHHHHhcCChHHH
Q 036003 379 DEAYRFIDELPIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELD--DSHGGDYVILSNLCARAGRWEDV 447 (558)
Q Consensus 379 ~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 447 (558)
.+...+-.+....| |...-..+...+...|+.++|.+.+-.++..+ -.+...-..|+..+.-.|.-+.+
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 55555555553345 55555667777777888888877777776654 34445666677777666654443
No 237
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.70 E-value=1.3 Score=39.80 Aligned_cols=166 Identities=14% Similarity=0.178 Sum_probs=91.0
Q ss_pred HHhcCCHHHHHHHHhccCCC------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHc---c
Q 036003 270 HAKCGRLDDAVSVFDNMSGK------DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDEITFLGLLYACSH---T 339 (558)
Q Consensus 270 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~---~ 339 (558)
-.+.|++++|.+.|+.+... ...+--.++-++.+.++++.|+..+++....- -.||. -|..-|.+++. .
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccC
Confidence 34557777777777776643 22334455666677777777777777766632 23332 23333333331 1
Q ss_pred ----CCh---HHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCH
Q 036003 340 ----GLV---DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI--LWRTLLSSCSSHNNL 410 (558)
Q Consensus 340 ----g~~---~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~ 410 (558)
.+. ..|..-|+.+..++ || ..-..+|..-+..+. |.. .=..+.+-|.+.|.+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ry---Pn-------------S~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRY---PN-------------SRYAPDAKARIVKLN---DALAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHC---CC-------------CcchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcCh
Confidence 111 12222333333221 11 111111111111110 000 112356678899999
Q ss_pred HHHHHHHHHHHccCCCCcc---cHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 411 GLAKQVIERIFELDDSHGG---DYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 411 ~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
-.|..-++++++.-|.... .+..+..+|...|..++|.+.-+-+.
T Consensus 184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 9999999999988666544 46667788999999999988765554
No 238
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.69 E-value=0.32 Score=40.37 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchh----hcCCCCChhH
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD----KYGIVPGIKH 364 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 364 (558)
+...++..+...|++++|..+.+.+.... +.+...+..+|.++...|+...|.++|+.+.. ..|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34556667777888888888888887742 23567888888888888888888888876653 2367776654
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.64 E-value=0.62 Score=47.11 Aligned_cols=160 Identities=12% Similarity=0.067 Sum_probs=104.8
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHHc----cCChHHHHHHHHHchhhcCCCCChh
Q 036003 294 WSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDE-----ITFLGLLYACSH----TGLVDEGWNYFYSMRDKYGIVPGIK 363 (558)
Q Consensus 294 ~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 363 (558)
...++....-.|+-+.+++.+.+..+.+ +.-.. ..|...+..++. ....+.|.+++..+.++ -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3444555555666677777666655432 22111 123333333332 45678899999999864 35555
Q ss_pred HHH-HHHHHHhhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhH-H
Q 036003 364 HYG-CMVDLLGRAGRLDEAYRFIDELPI-K-----STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL-S 435 (558)
Q Consensus 364 ~~~-~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l-~ 435 (558)
.|. .-.+.+...|++++|++.|++.-. + -....+--+...+....++++|.+.|.++.+....+...|..+ +
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 544 334667788999999999997521 1 1224455567778889999999999999999887766666554 4
Q ss_pred HHHHhcCCh-------HHHHHHHHHHHh
Q 036003 436 NLCARAGRW-------EDVDYLRKLMKD 456 (558)
Q Consensus 436 ~~~~~~g~~-------~~A~~~~~~m~~ 456 (558)
.+|...|+. ++|.++|++...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 456677888 888888887754
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.58 E-value=0.2 Score=48.89 Aligned_cols=200 Identities=14% Similarity=0.076 Sum_probs=101.0
Q ss_pred HHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCC
Q 036003 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377 (558)
Q Consensus 298 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 377 (558)
+.---+..+...-+++-++..+ +.||-.+.-+++ +--....+.++.++|++..+. + ...+..-- .....|.
T Consensus 175 Mq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s~-~~~~~g~ 245 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKSQ-FLQHHGH 245 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchhh-hhhcccc
Confidence 3333445555566666666655 455543332332 222345577788888777653 1 00100000 0001111
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC--CcccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS--HGGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 378 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
..+.+..-..++-..+=..+..++.+.|+.++|.+.++++++..|. +......|+.++...+.+.++..++.+..
T Consensus 246 ---~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 246 ---FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred ---hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 1111111111222333345677777888888888888888876654 34567788888888888888888888876
Q ss_pred hCCCccCCcccEEE--EC--CEEEEEeeCC-CCCCChHHHHHHHHHHHHHHHHcCcccC
Q 036003 456 DRGVLKVPGCSSIE--VN--NVVREFFSGD-GVHSYSTDLQKALDELVKELKMVGYVPD 509 (558)
Q Consensus 456 ~~g~~~~~~~~~~~--~~--~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~m~~~g~~pd 509 (558)
+....++..+.+.. +. .....+.... ...|.......+++-+-+.++-+..+|+
T Consensus 323 Di~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 323 DISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred cccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 55444443332211 00 0001111110 1222222333445555666777788876
No 241
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.53 E-value=0.14 Score=40.22 Aligned_cols=91 Identities=14% Similarity=0.091 Sum_probs=68.7
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc----ccHHhHHHHHHhcCC
Q 036003 370 DLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG----GDYVILSNLCARAGR 443 (558)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~ 443 (558)
-++...|+++.|++.|.+. ..- .....||.-..++.-+|+.++|+.-+++++++.-+.. ..|..-+..|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567788888888888876 222 3667888888888889999999999998888753322 246666777888889
Q ss_pred hHHHHHHHHHHHhCCCc
Q 036003 444 WEDVDYLRKLMKDRGVL 460 (558)
Q Consensus 444 ~~~A~~~~~~m~~~g~~ 460 (558)
-+.|..-|+...+.|-+
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 88898888888776653
No 242
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.51 E-value=0.18 Score=40.37 Aligned_cols=47 Identities=26% Similarity=0.438 Sum_probs=26.6
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHH
Q 036003 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKSTPILWRTLLSS 403 (558)
Q Consensus 357 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~ 403 (558)
...|+..+..+++.+|+..|++..|.++++.. +++-+..+|..|+.-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 44456666666666666666666666665554 333345555555543
No 243
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.51 E-value=1.7 Score=38.76 Aligned_cols=194 Identities=16% Similarity=0.146 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC-----CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 036003 261 KVNTALIDMHAKCGRLDDAVSVFDNMSG-----KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY- 334 (558)
Q Consensus 261 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~- 334 (558)
..+......+...+++..+...+..... .....+......+...+.+..+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 3444455555555666555555554431 2334445555555555666666666666655332221 11111222
Q ss_pred HHHccCChHHHHHHHHHchhhcCC--CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCC
Q 036003 335 ACSHTGLVDEGWNYFYSMRDKYGI--VPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST--PILWRTLLSSCSSHNN 409 (558)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~--~~~~~~l~~~~~~~g~ 409 (558)
.+...|+++.+...+.+.... .. ......+......+...++.+.|...+.+. ...++ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 556666777777666666321 11 112233333334455666777777776665 22222 4556666666677777
Q ss_pred HHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 410 LGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 410 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
++.+...+.......|.....+..+...+...|.++++...+++...
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777666444455555555555667777766666654
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.41 E-value=0.1 Score=46.87 Aligned_cols=92 Identities=15% Similarity=0.119 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC---cccHHhHH
Q 036003 364 HYGCMVDLLGRAGRLDEAYRFIDEL-PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH---GGDYVILS 435 (558)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~ 435 (558)
.|+.-+.. .+.|++..|...|... ..-|+ +..+.-|..++...|++++|...|..+.+..|.+ +..+.-|+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 34444433 3445566666666654 11111 1233336667777777777777777776655444 34566667
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 036003 436 NLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 436 ~~~~~~g~~~~A~~~~~~m~~ 456 (558)
.+..+.|+.++|..+|+++.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 777777777777777777665
No 245
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.31 E-value=0.96 Score=45.09 Aligned_cols=159 Identities=16% Similarity=0.138 Sum_probs=94.9
Q ss_pred HHHHHCCCccHHHHHHH--HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036003 198 TAYARSSRPNEALSLFR--ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275 (558)
Q Consensus 198 ~~~~~~g~~~~A~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 275 (558)
....-.++++++.+... ++.. .+ +......++..+.+.|..+.|.++...-. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 33455677777666664 2221 12 24456677777777888888777643321 23455678888
Q ss_pred HHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhh
Q 036003 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355 (558)
Q Consensus 276 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 355 (558)
++.|.++.+... +...|..|.....+.|+++-|.+.|++..+ |..|+-.|...|+.+.-.++.+....+
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 888888877665 566888888888888888888888887543 556666677778776666666555442
Q ss_pred cCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 036003 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389 (558)
Q Consensus 356 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 389 (558)
| -++....++.-.|+.++..+++.+-+
T Consensus 403 -~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 403 -G------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred -c------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2 24445555556677777777776654
No 246
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.20 E-value=0.5 Score=45.45 Aligned_cols=128 Identities=23% Similarity=0.273 Sum_probs=69.0
Q ss_pred ccHHHHHHHHHhcCcccHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCChHHHHHHHhccCC--CCcchH-HHHHH
Q 036003 123 YSFPSLLKACACVGAEALEEGKQLHCFAIKLG-LNSNLYVCTTLINLYAECSDVEAARRIFENISE--PCVVSY-NAIIT 198 (558)
Q Consensus 123 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~li~ 198 (558)
..|...|+...+. .-++.|..+|-++.+.| +.++..++++++..++ .|+...|..+|+.-.. +|...| +..+.
T Consensus 398 ~v~C~~~N~v~r~--~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRK--RGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHH--hhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 4455555555555 55666666666666655 4555666666665544 3555556666654332 444433 33444
Q ss_pred HHHHCCCccHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 036003 199 AYARSSRPNEALSLFRELQERNLKPT--DVTMLSALSSCALLGSLDLGKWIHEYIKKY 254 (558)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 254 (558)
.+..-++-+.|..+|+..... +..+ ...|..+|.--...|++..+..+-+++...
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 455556666666666643322 1222 345666666666666666666655555543
No 247
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.01 E-value=2.4 Score=37.69 Aligned_cols=197 Identities=14% Similarity=0.108 Sum_probs=119.3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHH-H
Q 036003 226 VTMLSALSSCALLGSLDLGKWIHEYIKKY-GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIV-A 300 (558)
Q Consensus 226 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~-~ 300 (558)
..+......+...+++..+...+...... ........+..+...+...+++..+.+.+...... +......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 33344444444445555544444444331 22233334444445555555556666655555431 1122222223 6
Q ss_pred HHHCCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhc
Q 036003 301 YATHGQGHKSILMFEEMMKAQVSP----DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP-GIKHYGCMVDLLGRA 375 (558)
Q Consensus 301 ~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~ 375 (558)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+..... .... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHc
Confidence 7778888888888888755 233 233444444446677888888888888875 3333 467777888888888
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 376 GRLDEAYRFIDEL-PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 376 g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
++++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8899998888877 33444 445555555555777899999999999888876
No 248
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.99 E-value=3.5 Score=45.01 Aligned_cols=111 Identities=16% Similarity=0.141 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHcc
Q 036003 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI--TFLGLLYACSHT 339 (558)
Q Consensus 262 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~ 339 (558)
.|.+..+-+...+.+++|.-.|+..-+ ..--+.+|...|++.+|+.+..++... -+.. +-..|..-+...
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHc
Confidence 334444445556777777666665432 233566777788888888887776431 1221 224677778888
Q ss_pred CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 036003 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389 (558)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 389 (558)
+++-+|-++..+...+ ....+..|++...+++|..+....+
T Consensus 1013 ~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred ccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 9999998888877652 2345667888888999998887764
No 249
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.85 E-value=6.3 Score=41.63 Aligned_cols=115 Identities=11% Similarity=0.094 Sum_probs=58.7
Q ss_pred CCChHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 036003 304 HGQGHKSILMFEEMMKAQ-VSPDE--ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380 (558)
Q Consensus 304 ~~~~~~a~~~~~~m~~~g-~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 380 (558)
..+.+.|..++....... ..+.. .....+.......+..+++...+...... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 345577777777664432 22222 22333332223322245555555554321 1233444444555557777777
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036003 381 AYRFIDELPI--KSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421 (558)
Q Consensus 381 A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (558)
+...+..|+. .-...-..=+..++...|+.++|...|+++.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777777731 1122222234555566777777777777764
No 250
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.82 E-value=5.1 Score=40.46 Aligned_cols=382 Identities=14% Similarity=0.100 Sum_probs=226.2
Q ss_pred ChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC--CCcc-cHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHH
Q 036003 52 DLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE--PDIV-LFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSL 128 (558)
Q Consensus 52 ~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 128 (558)
+...++.||.--... ...+.+..+++.+.. |-.. -|......=.+.|..+.+..+|++-.. |+..+...|...
T Consensus 44 ~f~~wt~li~~~~~~---~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSI---EDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCch---hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 344555556544444 566777777777664 4333 355555556677888999999998876 466677777777
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHh-CCC-ChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHH---C
Q 036003 129 LKACACVGAEALEEGKQLHCFAIKL-GLN-SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR---S 203 (558)
Q Consensus 129 l~~~~~~~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~ 203 (558)
+.-+.... |+.+.....|+.+... |.. -+...|...|.--..++++.....+++++.+-....|+..-.-|.+ .
T Consensus 120 ~~f~~n~~-~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 120 LAFLKNNN-GDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HHHHhccC-CCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhc
Confidence 77666543 8888888888888764 322 2445677777777888899999999999887444444444443332 2
Q ss_pred ------CCccHHHHHHHHHHHC----CCCCCHHHHHHHHHHHh-ccCChHH------------------------HHHHH
Q 036003 204 ------SRPNEALSLFRELQER----NLKPTDVTMLSALSSCA-LLGSLDL------------------------GKWIH 248 (558)
Q Consensus 204 ------g~~~~A~~~~~~m~~~----~~~p~~~~~~~ll~~~~-~~~~~~~------------------------a~~~~ 248 (558)
...+++.++-...... -..+.......-+.--. ..+..+. ....+
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~f 278 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGF 278 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhh
Confidence 2234444443333211 00011111111111110 0111111 11222
Q ss_pred HHHHHhC-------CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHH
Q 036003 249 EYIKKYG-------LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMM 318 (558)
Q Consensus 249 ~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 318 (558)
+.-.+.- .+++..+|...+..-.+.|+.+.+.-+|++..-+ =...|-..+.-.-..|+.+-|..++....
T Consensus 279 E~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~ 358 (577)
T KOG1258|consen 279 EEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARAC 358 (577)
T ss_pred hhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhh
Confidence 2221110 1234567777777778888888888888887654 22334444444444588888887777665
Q ss_pred HCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHhhcCCHHHHH---HHHHhC-CCC
Q 036003 319 KAQVS--PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG-IKHYGCMVDLLGRAGRLDEAY---RFIDEL-PIK 391 (558)
Q Consensus 319 ~~g~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~ 391 (558)
+--.+ |....+.+.+ +-..|+++.|..+++.+.+. . |+ ...-..-+....+.|..+.+. .++... +..
T Consensus 359 ~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~ 433 (577)
T KOG1258|consen 359 KIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK 433 (577)
T ss_pred hhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc
Confidence 54322 2333333332 34568999999999999874 3 44 333334456667888888887 444443 212
Q ss_pred CCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCC
Q 036003 392 STPILWRTLLS-----SCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443 (558)
Q Consensus 392 ~~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 443 (558)
-+..+...+.- .+.-.++.+.|..++.++.+..|++-..|..+++.....+.
T Consensus 434 ~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 434 ENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 22222222222 23446899999999999999999998889988888766653
No 251
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.78 E-value=1.1 Score=36.40 Aligned_cols=19 Identities=11% Similarity=-0.041 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHccCCCCc
Q 036003 410 LGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 410 ~~~a~~~~~~~~~~~~~~~ 428 (558)
...|..-|+++++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 5567777777777777754
No 252
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.77 E-value=0.37 Score=44.95 Aligned_cols=46 Identities=13% Similarity=0.137 Sum_probs=22.4
Q ss_pred HHCCCccHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCChHHHHH
Q 036003 201 ARSSRPNEALSLFRELQER--NLKPTDVTMLSALSSCALLGSLDLGKW 246 (558)
Q Consensus 201 ~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~ 246 (558)
..+.+.++|+..+.+-... +..---.+|..+..+.++.|.++++..
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 3455666666666555432 001112244455555555555555543
No 253
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.74 E-value=0.27 Score=44.22 Aligned_cols=100 Identities=9% Similarity=0.059 Sum_probs=75.5
Q ss_pred HHHHHHhccC--CCCcchHHHHHHHHHHC-----CCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----------
Q 036003 177 AARRIFENIS--EPCVVSYNAIITAYARS-----SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG---------- 239 (558)
Q Consensus 177 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---------- 239 (558)
..+..|.... ++|-.+|-+.+..+... +..+-....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666666 47777787777776543 556666777888999999999999999998875543
Q ss_pred ------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 036003 240 ------SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276 (558)
Q Consensus 240 ------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 276 (558)
+-+=+..++++|..+|+.||..+-..|++++.+.|..
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2234678899999999999999888899998877653
No 254
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.73 E-value=1.4 Score=34.90 Aligned_cols=62 Identities=10% Similarity=0.153 Sum_probs=39.9
Q ss_pred HHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 036003 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256 (558)
Q Consensus 194 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 256 (558)
..-+.....+|+-+.-.+++.++.+. -.+++.....+..+|.+.|+..++..++.++.+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34556677777777777777777653 367777777788888888888888887777777764
No 255
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.66 E-value=0.098 Score=30.43 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 036003 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 427 (558)
..|..+...+...|++++|++.|+++++++|.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677778888888888888888888887764
No 256
>PRK11906 transcriptional regulator; Provisional
Probab=94.63 E-value=0.69 Score=45.24 Aligned_cols=62 Identities=5% Similarity=-0.085 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHH
Q 036003 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454 (558)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (558)
|+.....+..+....++++.|...|+++..++|+.+.+|...+..+.-.|+.++|.+.+++.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444444444455555555555555555555555555555555555555555555543
No 257
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.62 E-value=0.075 Score=31.02 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
.+|..+..++...|++++|+..|+++++++|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888775
No 258
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.53 E-value=1.1 Score=44.72 Aligned_cols=154 Identities=10% Similarity=0.016 Sum_probs=80.7
Q ss_pred hcCCCchHHHHHHH--HhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCh
Q 036003 98 SRSKTPIRAIFLFV--ELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDV 175 (558)
Q Consensus 98 ~~~g~~~~A~~~~~--~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 175 (558)
.-.|+++++.+..+ ++.. .++ ..-.+.+++-+-+. |..+.|+++...-. .-.....++|++
T Consensus 272 v~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~--G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKK--GYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHT--T-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHC--CCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 44566666655554 1111 111 23355555555555 77777766643321 224455677777
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 036003 176 EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255 (558)
Q Consensus 176 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 255 (558)
+.|.++.++.. +...|..|.....++|+++-|.+.|.+... +..|+-.|.-.|+.+.-.++.+.....|
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 77777766654 555777777777777777777777776542 4455555666677666666666555544
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 036003 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285 (558)
Q Consensus 256 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 285 (558)
- ++....++.-.|+.++..+++.+
T Consensus 404 ~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 D------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred C------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 23334444455666665555443
No 259
>PRK15331 chaperone protein SicA; Provisional
Probab=94.53 E-value=1.1 Score=37.32 Aligned_cols=49 Identities=10% Similarity=0.152 Sum_probs=19.2
Q ss_pred HCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHc
Q 036003 303 THGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352 (558)
Q Consensus 303 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 352 (558)
+.|++++|..+|+-+...+.. +..-+..|..++...+++++|...|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A 97 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVA 97 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444332211 2222333333334444444444444433
No 260
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.49 E-value=2.2 Score=34.90 Aligned_cols=42 Identities=19% Similarity=0.038 Sum_probs=20.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 036003 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273 (558)
Q Consensus 231 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (558)
++..+.+.+.......+++.+...+ ..+...++.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3444444445555555555555444 23444555555555543
No 261
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.48 E-value=0.4 Score=43.24 Aligned_cols=101 Identities=16% Similarity=0.103 Sum_probs=60.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHchhhcCCC-CChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 036003 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV-PGIKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKS-TPILWRTLL 401 (558)
Q Consensus 328 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l~ 401 (558)
.|+..+. +.+.|++..|.+.|....+++.-. -....+--|...+...|++++|..+|..+ +..| -+..+--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4544443 344566777777777776632110 11233444667777777777777777665 2222 235556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCCcc
Q 036003 402 SSCSSHNNLGLAKQVIERIFELDDSHGG 429 (558)
Q Consensus 402 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 429 (558)
.+..+.|+.++|...|+++.+.-|..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 6777777778888777777777776544
No 262
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.30 E-value=5.3 Score=39.50 Aligned_cols=52 Identities=13% Similarity=0.069 Sum_probs=24.0
Q ss_pred HHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 036003 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254 (558)
Q Consensus 200 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 254 (558)
.-+..++..-++.-++..+ +.||..+.-.++ +-.......++++++++..+.
T Consensus 178 AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA 229 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA 229 (539)
T ss_pred HHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH
Confidence 3344445554455444444 245443322222 222334456666666666554
No 263
>PRK11906 transcriptional regulator; Provisional
Probab=94.09 E-value=2.4 Score=41.64 Aligned_cols=144 Identities=8% Similarity=0.023 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHc---------cCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhc
Q 036003 307 GHKSILMFEEMMK-AQVSPDE-ITFLGLLYACSH---------TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375 (558)
Q Consensus 307 ~~~a~~~~~~m~~-~g~~p~~-~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 375 (558)
.+.|+.+|.+... ..+.|+. ..|..+..++.. ..+..+|.++-++..+ --+.|......+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhh
Confidence 4577888888872 2256654 444444433321 2234556666666654 2234667777777777888
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCccc--HHhHHHHHHhcCChHHHHHHH
Q 036003 376 GRLDEAYRFIDEL-PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD--YVILSNLCARAGRWEDVDYLR 451 (558)
Q Consensus 376 g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~ 451 (558)
++++.|..+|++. ...|| ..+|......+.-.|+.++|.+.++++++++|....+ ....++.|+.. ..++|.+++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 8899999999998 55665 4566666667778899999999999999999886543 33344456554 467777776
Q ss_pred HH
Q 036003 452 KL 453 (558)
Q Consensus 452 ~~ 453 (558)
-+
T Consensus 431 ~~ 432 (458)
T PRK11906 431 YK 432 (458)
T ss_pred hh
Confidence 54
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.06 E-value=1.9 Score=40.01 Aligned_cols=155 Identities=12% Similarity=0.020 Sum_probs=89.7
Q ss_pred hcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHccCChHH
Q 036003 272 KCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL----GLLYACSHTGLVDE 344 (558)
Q Consensus 272 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~----~ll~~~~~~g~~~~ 344 (558)
-.|+..+|...++++.+. |..+++..-.+|...|+.+.-...+++.... ..|+...|. .+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 346666666666666543 6667777777777778777777777776653 233432222 22334456777777
Q ss_pred HHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHH
Q 036003 345 GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP------ILWRTLLSSCSSHNNLGLAKQVIE 418 (558)
Q Consensus 345 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~ 418 (558)
|++.-++..+ --+.|.-.-.++...+...|+..++.+++.+-...-+. .-|--..-.+...+.++.|+++|+
T Consensus 194 AEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 7777666654 22234555566677777777777877777665211110 011111223345577777877776
Q ss_pred HHH--ccCCCCcc
Q 036003 419 RIF--ELDDSHGG 429 (558)
Q Consensus 419 ~~~--~~~~~~~~ 429 (558)
+-+ ++..++..
T Consensus 272 ~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 272 REIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHhhccchh
Confidence 633 34455553
No 265
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.00 E-value=4.2 Score=36.13 Aligned_cols=104 Identities=20% Similarity=0.282 Sum_probs=59.8
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 036003 90 FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLY 169 (558)
Q Consensus 90 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 169 (558)
|.....+|-...++++|-..+.+..+ +..-+...|. + . ...+.|.-+.+++.+. +.-...|+--..+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh----A---A--KayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH----A---A--KAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH----H---H--HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 44455677777788888777766653 1222222221 1 1 4456666666666543 23344566667778
Q ss_pred HhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHH
Q 036003 170 AECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217 (558)
Q Consensus 170 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 217 (558)
..+|..+.|-..+++.-+ ...+.++++|+++|++..
T Consensus 102 ~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqral 137 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRAL 137 (308)
T ss_pred HHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHH
Confidence 888887777666665321 234456777777776643
No 266
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.69 E-value=7.3 Score=37.82 Aligned_cols=149 Identities=9% Similarity=0.005 Sum_probs=79.6
Q ss_pred CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC--hhH
Q 036003 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP---DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG--IKH 364 (558)
Q Consensus 290 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~ 364 (558)
...+|..++..+.+.|.++.|...+.++...+... .......-+...-..|+..+|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 45568888888888888888888888877643211 2222333344455667888888888777762 11111 111
Q ss_pred HHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHccCCCCcccHHhHHHH
Q 036003 365 YGCMVDLLGRAGRLDEAYRF-IDELPIKSTPILWRTLLSSCSSH------NNLGLAKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
...+...+.. ..+..... ........-...+..+...+... ++.+++...|+++.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111100 00000000 00000000112333333333344 788999999999999998887777777766
Q ss_pred HHhc
Q 036003 438 CARA 441 (558)
Q Consensus 438 ~~~~ 441 (558)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6443
No 267
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.59 E-value=3.2 Score=39.04 Aligned_cols=193 Identities=13% Similarity=0.059 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHh-------ccCC--CCcchHHHHHHHHHHCCCccHHHHHHHHHHHC-CCCC---CHHH
Q 036003 161 VCTTLINLYAECSDVEAARRIFE-------NISE--PCVVSYNAIITAYARSSRPNEALSLFRELQER-NLKP---TDVT 227 (558)
Q Consensus 161 ~~~~ll~~~~~~g~~~~A~~~~~-------~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p---~~~~ 227 (558)
++..+..+.++.|.+++++..-- +..+ .-..+|-.+.+++-+.-++.+++.+-..-... |..| --..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 44455555566666555543221 1111 11223444555555555555555554433221 2222 1122
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhC-----CCCchhHHHHHHHHHHhcCCHHHHHHHHhccC-------CCCHH---
Q 036003 228 MLSALSSCALLGSLDLGKWIHEYIKKYG-----LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS-------GKDTQ--- 292 (558)
Q Consensus 228 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~--- 292 (558)
..++..++...+.++++.+.|+...+.. .-....++-.|...|.+..++++|.-+..+.. -.|..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 3345666667777888888777765432 22235667778888888888887765544332 12222
Q ss_pred ---hHHHHHHHHHHCCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHch
Q 036003 293 ---AWSAMIVAYATHGQGHKSILMFEEMMK----AQVSPD-EITFLGLLYACSHTGLVDEGWNYFYSMR 353 (558)
Q Consensus 293 ---~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 353 (558)
+.-.|..++...|+...|.+.-++..+ .|-+|. ......+.+.|...|+.+.|+.-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 223345567777777777777666543 443332 2345566677778888888877776654
No 268
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.48 E-value=3.6 Score=33.66 Aligned_cols=45 Identities=9% Similarity=-0.001 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhc
Q 036003 90 FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135 (558)
Q Consensus 90 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 135 (558)
-..++..+...+.+......++.+...+. .+....+.++..+++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 34455555555556666666666555542 3445555555555543
No 269
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.16 E-value=0.42 Score=43.79 Aligned_cols=67 Identities=18% Similarity=0.156 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh-----CCCcc
Q 036003 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD-----RGVLK 461 (558)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~ 461 (558)
.++..++..+...|+.+.+...+++.+..+|-+...|..++.+|.+.|+...|...++++.+ .|+.|
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P 225 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDP 225 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCc
Confidence 35566777788888889999999999999988888899999999999999999888887754 56655
No 270
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.85 E-value=2.7 Score=39.49 Aligned_cols=149 Identities=11% Similarity=0.041 Sum_probs=89.6
Q ss_pred CCCCHHHHHHHHHhccC-CchH----HHHHHHHHHhCCCCChhHHHHHHHHhhc--C-CCCCCHHHHHHHHccCCC----
Q 036003 17 LCTNTPNALSLLPRCTS-FRGL----KQIHAVTIKTHLQNDLNVLTKLINFCTQ--N-PTTSSMEHAHLLFDRIPE---- 84 (558)
Q Consensus 17 ~~p~~~~~~~ll~~~~~-~~~~----~~~~~~~~~~g~~~~~~~~~~li~~~~~--~-~~~~~~~~A~~~~~~~~~---- 84 (558)
......++++++..... .... ..+++.|.+.|+..+.+++-+-.-.... . ..+....+|..+++.|.+
T Consensus 56 r~~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~f 135 (297)
T PF13170_consen 56 RGNHRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPF 135 (297)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcc
Confidence 34456778888877776 2222 7888889999998888777664443333 1 111234567788888864
Q ss_pred ---CCcccHHHHHHHHhcCCCc----hHHHHHHHHhHHCCCCCCcc--cHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC
Q 036003 85 ---PDIVLFNTMARGYSRSKTP----IRAIFLFVELLNSGLLPDDY--SFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155 (558)
Q Consensus 85 ---~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~ 155 (558)
++-.++..|+.. ..+++ +.+..+|+.+.+.|+..+.. ....++..+-........++.++++.+.+.|+
T Consensus 136 LTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~ 213 (297)
T PF13170_consen 136 LTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGV 213 (297)
T ss_pred ccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCC
Confidence 344556666554 33333 45667777777777765433 33334433322211224567778888888887
Q ss_pred CChHHHHHHHHH
Q 036003 156 NSNLYVCTTLIN 167 (558)
Q Consensus 156 ~~~~~~~~~ll~ 167 (558)
++....|..+.-
T Consensus 214 kik~~~yp~lGl 225 (297)
T PF13170_consen 214 KIKYMHYPTLGL 225 (297)
T ss_pred ccccccccHHHH
Confidence 777666665443
No 271
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.84 E-value=2.3 Score=39.94 Aligned_cols=130 Identities=14% Similarity=0.154 Sum_probs=67.4
Q ss_pred cHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh--CC----ChHHHHHHHhccCC-------CCcchHHHHHHHHHHCCC
Q 036003 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE--CS----DVEAARRIFENISE-------PCVVSYNAIITAYARSSR 205 (558)
Q Consensus 139 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~--~g----~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~ 205 (558)
.+++...+++.+.+.|+.-+..+|-+..-.... .. ....|..+|+.|.+ ++-.++..++.. ..++
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 344555566666666666555554442222222 11 23456666666654 333444444433 2222
Q ss_pred ----ccHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccC-C--hHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 036003 206 ----PNEALSLFRELQERNLKPTDV-TMLSALSSCALLG-S--LDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270 (558)
Q Consensus 206 ----~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~-~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (558)
.+.+..+|+.+.+.|...... .+.+-+-++.... . ..++..+++.+.+.|+++....|..+.-..
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 244566677777766655332 2333333332222 1 346677888888888887777776554433
No 272
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.65 E-value=1.1 Score=41.49 Aligned_cols=160 Identities=11% Similarity=-0.010 Sum_probs=118.0
Q ss_pred HHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHH----HHHHHHhhcCC
Q 036003 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG----CMVDLLGRAGR 377 (558)
Q Consensus 302 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~ 377 (558)
.-.|++.+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++.. ...++...|. .+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578888999999999885 455667777778899999999999999999886 4456654444 34455668999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC----cccHHhHHHHHHhcCChHHHHHHH
Q 036003 378 LDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH----GGDYVILSNLCARAGRWEDVDYLR 451 (558)
Q Consensus 378 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 451 (558)
+++|++.-++. .+++ |.-.-.+....+.-.|+..++.++..+-...-..+ ...|-...-.+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999987 4444 55566777888888999999999887765433221 223556666777889999999999
Q ss_pred HHHHhCCCccCCc
Q 036003 452 KLMKDRGVLKVPG 464 (558)
Q Consensus 452 ~~m~~~g~~~~~~ 464 (558)
+.=.-.....+.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 8665444444443
No 273
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.58 E-value=5.6 Score=41.83 Aligned_cols=178 Identities=13% Similarity=0.067 Sum_probs=113.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCC
Q 036003 228 MLSALSSCALLGSLDLGKWIHEYIKKYGLDKY--VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305 (558)
Q Consensus 228 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 305 (558)
...-+....+...++-|..+-+ ..+..++ ........+-+.+.|++++|...|-+-..--. -..+|.-|....
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le--~s~Vi~kfLdaq 411 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE--PSEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC--hHHHHHHhcCHH
Confidence 4455666667777777766543 3333333 22333445556678999999877765432211 134566677777
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 036003 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI 385 (558)
Q Consensus 306 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 385 (558)
+...-..+++.+.+.|+. +...-..|+.+|.+.++.+.-.++.+...+. .+.-| ....+..+.+.+-.++|..+-
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g-~~~fd---~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKG-EWFFD---VETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCc-ceeee---HHHHHHHHHHhChHHHHHHHH
Confidence 777888888999998876 4444567889999999998877776655421 11112 344667777788888888777
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036003 386 DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420 (558)
Q Consensus 386 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 420 (558)
.+... +......+ +...+++++|+++++.+
T Consensus 487 ~k~~~--he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 487 TKFKK--HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHhcc--CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 77653 33333333 44568899999888754
No 274
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.49 E-value=5.7 Score=33.31 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=14.6
Q ss_pred cHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 430 DYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
.-..|.-+-.+.|++.+|.+.|+.+..
T Consensus 169 ArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 169 AREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 334455555556666666666655543
No 275
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.33 E-value=17 Score=38.46 Aligned_cols=176 Identities=14% Similarity=0.043 Sum_probs=109.8
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCccc----HHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHH
Q 036003 55 VLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVL----FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130 (558)
Q Consensus 55 ~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 130 (558)
....-+..+.+. .-++.|..+-+.-.. |... .....+.+-+.|++++|...|-+-... +.| ..++.
T Consensus 336 ~le~kL~iL~kK---~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 336 DLETKLDILFKK---NLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred cHHHHHHHHHHh---hhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 444556666666 778888887766443 3322 223345556789999999988776532 233 34566
Q ss_pred HHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcc-hHHHHHHHHHHCCCccHH
Q 036003 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV-SYNAIITAYARSSRPNEA 209 (558)
Q Consensus 131 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A 209 (558)
-+... ....+-..+++.+.+.|+. +...-..|+++|.+.++.++-.++.+...+.... -....+..+.+.+-.++|
T Consensus 406 kfLda--q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 406 KFLDA--QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEA 482 (933)
T ss_pred HhcCH--HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHH
Confidence 66666 7788888888888888865 4455567899999999999888888776621111 134455666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 036003 210 LSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251 (558)
Q Consensus 210 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 251 (558)
..+-..... .......+ +-..+++++|.++++.+
T Consensus 483 ~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 555444322 22222222 23456777777766543
No 276
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.20 E-value=1.1 Score=35.37 Aligned_cols=89 Identities=13% Similarity=-0.002 Sum_probs=48.2
Q ss_pred HHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCC
Q 036003 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKST--PILWRTLLSSCSSHNN 409 (558)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~ 409 (558)
....|+.+.|++.|..... -.+-....||.-..++.-+|+.++|++-+++. +-+.. -..|..-...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3455566666666655553 23334555666566666666666665555543 10100 1223333445666777
Q ss_pred HHHHHHHHHHHHccCCC
Q 036003 410 LGLAKQVIERIFELDDS 426 (558)
Q Consensus 410 ~~~a~~~~~~~~~~~~~ 426 (558)
.+.|..-|+.+.+++.+
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 77777777777776643
No 277
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.17 E-value=17 Score=38.11 Aligned_cols=68 Identities=16% Similarity=0.304 Sum_probs=38.6
Q ss_pred HHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 036003 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410 (558)
Q Consensus 331 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 410 (558)
..+..|.+.|-+++-.-++.+|-. ++.+|.-.--+.+++++|+++.++ ..|...|..||..+...-.+
T Consensus 639 kA~eiC~q~~~~~E~VYlLgrmGn---------~k~AL~lII~el~die~AIefvKe---q~D~eLWe~LI~~~ldkPe~ 706 (846)
T KOG2066|consen 639 KALEICSQKNFYEELVYLLGRMGN---------AKEALKLIINELRDIEKAIEFVKE---QDDSELWEDLINYSLDKPEF 706 (846)
T ss_pred HHHHHHHhhCcHHHHHHHHHhhcc---------hHHHHHHHHHHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCcHH
Confidence 444555555555555555555531 233333334455666677766665 45778888888776544333
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.01 E-value=0.3 Score=28.96 Aligned_cols=25 Identities=12% Similarity=0.064 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 036003 397 WRTLLSSCSSHNNLGLAKQVIERIF 421 (558)
Q Consensus 397 ~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (558)
|..|...|.+.|++++|++++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555556666666666666666643
No 279
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.95 E-value=0.32 Score=28.20 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
+|..+...|...|++++|...|++++++.|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666777778888888888888888877763
No 280
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.92 E-value=14 Score=36.67 Aligned_cols=174 Identities=10% Similarity=0.088 Sum_probs=108.7
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036003 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG--KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334 (558)
Q Consensus 257 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 334 (558)
+.|....-+++..+..+-++.-.+.+..+|.. .+-..|-.++++|..+ ..++-..+|+++.+..+. |.+.-..|..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 34445555667777776666666666666653 3566777888888887 567778888888875432 3333444444
Q ss_pred HHHccCChHHHHHHHHHchhhcCCCCC------hhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 036003 335 ACSHTGLVDEGWNYFYSMRDKYGIVPG------IKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKSTPILWRTLLSSC 404 (558)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~ 404 (558)
.|-+ ++...+..+|.++.. .+.|- ...|.-|+..- ..+.+....+..++ +...-.+.+..+-.-|
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHH-hchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 4444 777888888888775 33331 23444444322 24555555555554 2223345566666778
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCcccHHhHHHH
Q 036003 405 SSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
....++++|++++..+++.+..+.-+-..++.-
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 888899999999998888876665544444443
No 281
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.79 E-value=8.8 Score=37.21 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC----CCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDD----SHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
...+|..+...+.+.|+++.|...+.++...++ ..+.....-+..+...|+..+|...++...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456788889999999999999999999887652 13456666788888999999999998888763
No 282
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.67 E-value=11 Score=34.77 Aligned_cols=119 Identities=8% Similarity=0.035 Sum_probs=69.3
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-H---HhHHHHHHHHHHCCCh
Q 036003 232 LSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD-T---QAWSAMIVAYATHGQG 307 (558)
Q Consensus 232 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~---~~~~~li~~~~~~~~~ 307 (558)
.......|++.+|..+|+........ +...--.+..+|...|+.+.|..++..+.... . .....-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 33456778888888888888776432 34455568888888999999999988887441 1 1112223333333333
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchh
Q 036003 308 HKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRD 354 (558)
Q Consensus 308 ~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 354 (558)
.+...+-++.-. .| |...-..+...+...|+.+.|.+.+-.+.+
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333333332 34 444444555666666777777665555444
No 283
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.60 E-value=37 Score=40.73 Aligned_cols=305 Identities=10% Similarity=0.034 Sum_probs=160.8
Q ss_pred ccHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCCChHHHHHHHhc-cCCCCcchHHHHHHHHHHCCCccHHHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGL--NSNLYVCTTLINLYAECSDVEAARRIFEN-ISEPCVVSYNAIITAYARSSRPNEALSLFR 214 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 214 (558)
+.+.+|...++.-..... ......|-.+...|+.-++.|....+... ...++ ...-|......|++..|...|+
T Consensus 1397 ~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye 1473 (2382)
T KOG0890|consen 1397 KAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYE 1473 (2382)
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHH
Confidence 777788877776311110 11223344455588888888887777663 32232 2234445667788999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH-HHHHHHhcCCHHHHHHHHhccCCCCHHh
Q 036003 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTA-LIDMHAKCGRLDDAVSVFDNMSGKDTQA 293 (558)
Q Consensus 215 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 293 (558)
.+.+.+ ++...+++.++......+.++...-..+-.... ..+....++. =+.+--+.++++....... ..+..+
T Consensus 1474 ~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~ 1548 (2382)
T KOG0890|consen 1474 RLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEY 1548 (2382)
T ss_pred HhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccc
Confidence 888763 333667777777766777777666544433322 1222222222 2344456677777666655 445555
Q ss_pred HHHH--HHHHHHCCC--hHHHHHHHHHHHHCCCCC--------C-HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC
Q 036003 294 WSAM--IVAYATHGQ--GHKSILMFEEMMKAQVSP--------D-EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP 360 (558)
Q Consensus 294 ~~~l--i~~~~~~~~--~~~a~~~~~~m~~~g~~p--------~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 360 (558)
|... +..+.+... .-.-.+..+.+.+.-+.| + ...|..++....-.. .+.-.+.+. +..+
T Consensus 1549 w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~~~~~l~------~~s~ 1621 (2382)
T KOG0890|consen 1549 WSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LENSIEELK------KVSY 1621 (2382)
T ss_pred hhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHHHHHHhh------ccCc
Confidence 5544 222222221 111112333332211111 0 122333333222111 111111111 2222
Q ss_pred C------hhHHHHHHHHHhhcCCHHHHHHHHHh----CCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 036003 361 G------IKHYGCMVDLLGRAGRLDEAYRFIDE----LPIKS-----TPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425 (558)
Q Consensus 361 ~------~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 425 (558)
+ ...|..-+..-....+..+-+--+++ ...+| -..+|-...+.....|.++.|...+-++.+..+
T Consensus 1622 ~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~ 1701 (2382)
T KOG0890|consen 1622 DEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL 1701 (2382)
T ss_pred cccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc
Confidence 2 11222222111111112221111221 11122 236788888889999999999999988888874
Q ss_pred CCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036003 426 SHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 426 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (558)
+ ..+.-.+..+...|+...|..++++..+...
T Consensus 1702 ~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1702 P--EIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred c--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 4 6788889999999999999999998876544
No 284
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.50 E-value=12 Score=34.95 Aligned_cols=17 Identities=18% Similarity=-0.050 Sum_probs=9.7
Q ss_pred HHhcCCHHHHHHHHHHH
Q 036003 404 CSSHNNLGLAKQVIERI 420 (558)
Q Consensus 404 ~~~~g~~~~a~~~~~~~ 420 (558)
+.+.+++++|.+.|+-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 34556666666666543
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.46 E-value=0.33 Score=28.80 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=22.3
Q ss_pred cHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 430 DYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
+|..|+.+|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999854
No 286
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.29 E-value=0.7 Score=39.44 Aligned_cols=86 Identities=14% Similarity=0.080 Sum_probs=59.7
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCCh
Q 036003 372 LGRAGRLDEAYRFIDEL-PIKS------TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444 (558)
Q Consensus 372 ~~~~g~~~~A~~~~~~~-~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 444 (558)
+.+.|++++|..-|.+. ..-| ..+.|..-..++.+.+.++.|+.-..++++++|....+...-+.+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 45566666666655554 1111 1234555556677788888888888888888887777777777888888888
Q ss_pred HHHHHHHHHHHhC
Q 036003 445 EDVDYLRKLMKDR 457 (558)
Q Consensus 445 ~~A~~~~~~m~~~ 457 (558)
++|+.-|+++.+.
T Consensus 185 eealeDyKki~E~ 197 (271)
T KOG4234|consen 185 EEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887764
No 287
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.20 E-value=5.1 Score=34.37 Aligned_cols=94 Identities=13% Similarity=0.047 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCCh------hH
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE--ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI------KH 364 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~ 364 (558)
.+..+...|++.|+.+.|++.|.++.+....+.. ..+-.+|......+++..+.....+.........|. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3556666777777777777777777665544443 345566666666777777766666655421111111 12
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 365 YGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
|..| .+...+++.+|-+.|-+.
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHcc
Confidence 2222 233467777777777665
No 288
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.89 E-value=2 Score=39.48 Aligned_cols=76 Identities=20% Similarity=0.306 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 036003 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMK-----AQVSPDEITFLG 331 (558)
Q Consensus 260 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~~ 331 (558)
..++..++..+...|+.+.+...++++... +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345566778888888888888888877643 667788888888888888888888887765 567776655544
Q ss_pred HHHH
Q 036003 332 LLYA 335 (558)
Q Consensus 332 ll~~ 335 (558)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
No 289
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.06 E-value=3.6 Score=34.46 Aligned_cols=137 Identities=10% Similarity=-0.011 Sum_probs=89.6
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHH---H
Q 036003 86 DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYV---C 162 (558)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~ 162 (558)
+...|..-+. +++.+..++|+.-|.++.+.|..- -..+..+=.+-....+|+...|...|+++-.....|-..- -
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~-YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGS-YPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCc-chHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 4445555554 467788999999999999886541 1112222222223333999999999999877544443321 1
Q ss_pred HHHHHHHHhCCChHHHHHHHhccCCC----CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCC
Q 036003 163 TTLINLYAECSDVEAARRIFENISEP----CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT 224 (558)
Q Consensus 163 ~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 224 (558)
-.-..++...|.+++.....+-+..+ -...-.+|.-+-.+.|++.+|.+.|..+......|.
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 11223467889999998888877642 123445677777889999999999999877544443
No 290
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.35 E-value=14 Score=32.33 Aligned_cols=163 Identities=11% Similarity=0.075 Sum_probs=87.6
Q ss_pred CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHH
Q 036003 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369 (558)
Q Consensus 290 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 369 (558)
-+..||-+.--+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++.-|.+-+-..-+.-.-.|-...|--++
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 35667888888888888888888888887743222222222222 23445777777766655554212223223333222
Q ss_pred HHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-------cccHHhHHHHHHhc
Q 036003 370 DLLGRAGRLDEAYRFI-DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH-------GGDYVILSNLCARA 441 (558)
Q Consensus 370 ~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~ 441 (558)
. ..-++.+|..-+ ++.. ..|..-|...+-.+.- |++. .+.+++++.+-..++ ..+|..|+.-|...
T Consensus 177 E---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 E---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred H---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2 233455554433 3332 2344444443333321 2211 122333333322222 35788888999999
Q ss_pred CChHHHHHHHHHHHhCCC
Q 036003 442 GRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 442 g~~~~A~~~~~~m~~~g~ 459 (558)
|+.++|..+|+-....++
T Consensus 251 G~~~~A~~LfKLaiannV 268 (297)
T COG4785 251 GDLDEATALFKLAVANNV 268 (297)
T ss_pred ccHHHHHHHHHHHHHHhH
Confidence 999999999987776544
No 291
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.27 E-value=2.8 Score=27.48 Aligned_cols=50 Identities=10% Similarity=0.085 Sum_probs=35.2
Q ss_pred HHhHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCc
Q 036003 431 YVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGY 506 (558)
Q Consensus 431 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~ 506 (558)
...+..++.+.|++++|.+..+.+.+. .|...++..+-+.+.+.|..+|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456778899999999999999999873 23334555555566677777774
No 292
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.17 E-value=15 Score=32.52 Aligned_cols=53 Identities=6% Similarity=-0.071 Sum_probs=30.5
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCccc------HH-hHHHHHHhcCChHHHHHHHHHHHh
Q 036003 404 CSSHNNLGLAKQVIERIFELDDSHGGD------YV-ILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~-~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
-...+++.+|+.+|++.....-+++-. |. .-+-++.-..+.-.+...+++..+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 456789999999999987655444322 11 112222222455556666666655
No 293
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.14 E-value=33 Score=36.27 Aligned_cols=66 Identities=20% Similarity=0.048 Sum_probs=41.9
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcc-----cHHHHHHHHHHHHHh
Q 036003 86 DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE-----ALEEGKQLHCFAIKL 153 (558)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-----~~~~a~~~~~~~~~~ 153 (558)
+...| ++|-.+.|.|++++|.++..+..+. .......|...+..+...+.+ .-++...-|++..+.
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 44455 5677889999999999999666543 555667788888888765311 223444555555444
No 294
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.79 E-value=3.9 Score=37.71 Aligned_cols=97 Identities=15% Similarity=0.195 Sum_probs=70.9
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC
Q 036003 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---------DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325 (558)
Q Consensus 255 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 325 (558)
|.+....+...++..-....+++.+...+-++... ..++|-.++ ..-++++++.++..=++-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccc
Confidence 44455555555666666667788888877766532 233333332 33467799999999999999999
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHchhh
Q 036003 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDK 355 (558)
Q Consensus 326 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 355 (558)
.++++.+|+.+.+.+++.+|.++.-.|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999998888777664
No 295
>PRK09687 putative lyase; Provisional
Probab=88.69 E-value=21 Score=33.37 Aligned_cols=181 Identities=10% Similarity=0.017 Sum_probs=77.2
Q ss_pred CChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCc----cHHHHHHHHHHHCCCCCCHHHHHHH
Q 036003 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRP----NEALSLFRELQERNLKPTDVTMLSA 231 (558)
Q Consensus 156 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~p~~~~~~~l 231 (558)
.+|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. .++...+..+... .++...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 345555555555555555433333333333345555555556666666653 3456666555332 3444444444
Q ss_pred HHHHhccCChHH--HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCC-ChH
Q 036003 232 LSSCALLGSLDL--GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG-QGH 308 (558)
Q Consensus 232 l~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~ 308 (558)
+.++...+.... .......+...-..++..+-...+.++.+.|+.+....+...+..+|...-...+.++.+.+ +..
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~ 191 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP 191 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH
Confidence 444443321110 01111112111112233444445555555555333333333333444443333344444332 123
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 036003 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341 (558)
Q Consensus 309 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 341 (558)
.+...+..+.. .++...-...+.++.+.|+
T Consensus 192 ~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 192 DIREAFVAMLQ---DKNEEIRIEAIIGLALRKD 221 (280)
T ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHccCC
Confidence 34444444442 2344444445555555555
No 296
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.58 E-value=1.2 Score=25.68 Aligned_cols=27 Identities=15% Similarity=0.284 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHH
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMK 319 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 319 (558)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 466666677777777777777777665
No 297
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.47 E-value=0.84 Score=42.33 Aligned_cols=95 Identities=11% Similarity=-0.023 Sum_probs=67.8
Q ss_pred HHHHHHccCChHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC
Q 036003 332 LLYACSHTGLVDEGWNYFYSMRDKYGIVP-GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHN 408 (558)
Q Consensus 332 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g 408 (558)
-.+-|.+.|++++|+.+|..... +.| +..++..-..+|.+..++..|+.-.... ... .-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 35568889999999999988774 344 7888888888999999988777655554 111 11233444444445567
Q ss_pred CHHHHHHHHHHHHccCCCCcc
Q 036003 409 NLGLAKQVIERIFELDDSHGG 429 (558)
Q Consensus 409 ~~~~a~~~~~~~~~~~~~~~~ 429 (558)
+..+|.+-++.++++.|.+..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH
Confidence 888888888999999998543
No 298
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.17 E-value=1.3 Score=27.60 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=12.3
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHH
Q 036003 294 WSAMIVAYATHGQGHKSILMFEEMMK 319 (558)
Q Consensus 294 ~~~li~~~~~~~~~~~a~~~~~~m~~ 319 (558)
|..+...|...|++++|.++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 299
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.09 E-value=3.5 Score=33.60 Aligned_cols=68 Identities=12% Similarity=0.132 Sum_probs=31.3
Q ss_pred hcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCC
Q 036003 374 RAGRLDEAYRFIDEL-PIKS---TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443 (558)
Q Consensus 374 ~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 443 (558)
..++.+++..+++.+ -.+| ...++.. ..+...|++++|.++|++..+..+..+..-..+..++.-.|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 355566666665555 1222 2222222 223455666666666666655554433333333333333333
No 300
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.93 E-value=8.2 Score=33.11 Aligned_cols=93 Identities=14% Similarity=0.046 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCC------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHC---CCCCCHHHHHHH
Q 036003 262 VNTALIDMHAKCGRLDDAVSVFDNMSGK------DTQAWSAMIVAYATHGQGHKSILMFEEMMKA---QVSPDEITFLGL 332 (558)
Q Consensus 262 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~l 332 (558)
.+..+...|++.|+.+.|.+.|.++.+. -...+-.+|......+++..+...+.+.... |-.++...--..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3455666777777777777777776644 1234556666777777777777776665542 222222111111
Q ss_pred HH--HHHccCChHHHHHHHHHchh
Q 036003 333 LY--ACSHTGLVDEGWNYFYSMRD 354 (558)
Q Consensus 333 l~--~~~~~g~~~~a~~~~~~~~~ 354 (558)
.. .+...+++..|-+.|-....
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCc
Confidence 11 23456788888888777654
No 301
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.91 E-value=15 Score=37.41 Aligned_cols=150 Identities=14% Similarity=0.053 Sum_probs=100.9
Q ss_pred HhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHH
Q 036003 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYF 349 (558)
Q Consensus 271 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~ 349 (558)
.-.|+++.|..++..+.++ .-+.++.-+-+.|..++|+++ .+|. .-|. ...+.|+++.|.++.
T Consensus 597 vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFe----lal~lgrl~iA~~la 660 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFE----LALKLGRLDIAFDLA 660 (794)
T ss_pred hhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhh----hhhhcCcHHHHHHHH
Confidence 3457777777777666633 234455556666766666653 3333 2222 234678888888876
Q ss_pred HHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcc
Q 036003 350 YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429 (558)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 429 (558)
.+.. +..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+.+....+-....+.+..|
T Consensus 661 ~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N-- 725 (794)
T KOG0276|consen 661 VEAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN-- 725 (794)
T ss_pred Hhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc--
Confidence 6553 45678899999999999999999988763 24456666777787776666666666666554
Q ss_pred cHHhHHHHHHhcCChHHHHHHHHHH
Q 036003 430 DYVILSNLCARAGRWEDVDYLRKLM 454 (558)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m 454 (558)
.-..+|...|+++++.+++..-
T Consensus 726 ---~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 ---LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---hHHHHHHHcCCHHHHHHHHHhc
Confidence 3344678889999999887643
No 302
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.65 E-value=27 Score=36.38 Aligned_cols=82 Identities=13% Similarity=0.086 Sum_probs=35.9
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHH
Q 036003 377 RLDEAYRFIDELPIKSTPILWRTLLSSCS----SHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452 (558)
Q Consensus 377 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 452 (558)
+...|.++|...........+..+...|. ...+...|..+++++.+.+.+....-...+..+.. ++++.+.-.+.
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~ 421 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYL 421 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHH
Confidence 44566666665532333333333322222 22355666666666666663221111122222222 55555555544
Q ss_pred HHHhCCC
Q 036003 453 LMKDRGV 459 (558)
Q Consensus 453 ~m~~~g~ 459 (558)
.+.+.|.
T Consensus 422 ~~a~~g~ 428 (552)
T KOG1550|consen 422 YLAELGY 428 (552)
T ss_pred HHHHhhh
Confidence 4444443
No 303
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.62 E-value=24 Score=32.92 Aligned_cols=60 Identities=13% Similarity=-0.026 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHCCChH---HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHchh
Q 036003 293 AWSAMIVAYATHGQGH---KSILMFEEMMKAQVSPD-EITFLGLLYACSHTGLVDEGWNYFYSMRD 354 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~---~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 354 (558)
++..++.+|...+..+ +|..+++.+.... |+ ...+..-+..+.+.++.+.+.+++.+|..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 3445555555555433 4444555554322 22 23343445555556677777777777765
No 304
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.54 E-value=39 Score=35.23 Aligned_cols=270 Identities=9% Similarity=0.033 Sum_probs=136.4
Q ss_pred hHHHHHHHhccCC-CCcchHHHHHHH-----HHHCCCccHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccC--
Q 036003 175 VEAARRIFENISE-PCVVSYNAIITA-----YARSSRPNEALSLFRELQE-------RNLKPTDVTMLSALSSCALLG-- 239 (558)
Q Consensus 175 ~~~A~~~~~~~~~-~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~~-- 239 (558)
...|...++...+ .+...-..+..+ +....+.+.|+..|....+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 3456666666554 333333323222 3344677777777777655 33 2223444455554432
Q ss_pred ---ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc---CCHHHHHHHHhccCCC-CHHhHHHHHHHHHH----CCChH
Q 036003 240 ---SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC---GRLDDAVSVFDNMSGK-DTQAWSAMIVAYAT----HGQGH 308 (558)
Q Consensus 240 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~ 308 (558)
+.+.|..++...-+.|. |+.... +...|... .+...|.++|...... ...++-.+..+|.. ..+..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHH
Confidence 55667777777777663 333322 22222222 3466777777766544 33333333333322 24577
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHH---hh----cCCHHHH
Q 036003 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL---GR----AGRLDEA 381 (558)
Q Consensus 309 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~---~~----~g~~~~A 381 (558)
.|..++.+..+.| .|...--...+..+.. +.++.+...+..+..- +...-...-..+.... .. ..+...+
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~ 458 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERA 458 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHH
Confidence 7888888887777 3343333333334444 6666665555555442 3221111111111111 11 2245566
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHccCCCCcccHHhHHHHHHh----cCChHHHHHHHHH
Q 036003 382 YRFIDELPIKSTPILWRTLLSSCSSH----NNLGLAKQVIERIFELDDSHGGDYVILSNLCAR----AGRWEDVDYLRKL 453 (558)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 453 (558)
..++.+.....+......+...|... .+++.|...+..+...+ ......+..++.. .. +..|.+++++
T Consensus 459 ~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~ 534 (552)
T KOG1550|consen 459 FSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQ 534 (552)
T ss_pred HHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHH
Confidence 66666664455555555565555433 35777777777776666 3444445544432 22 5677777776
Q ss_pred HHhC
Q 036003 454 MKDR 457 (558)
Q Consensus 454 m~~~ 457 (558)
....
T Consensus 535 ~~~~ 538 (552)
T KOG1550|consen 535 ASEE 538 (552)
T ss_pred HHhc
Confidence 6553
No 305
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.50 E-value=42 Score=35.51 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=28.7
Q ss_pred hHHHHHHHHhhcCCCCCCHHHHHHHHccCC---CCCcccHHHHHHHHhcC
Q 036003 54 NVLTKLINFCTQNPTTSSMEHAHLLFDRIP---EPDIVLFNTMARGYSRS 100 (558)
Q Consensus 54 ~~~~~li~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 100 (558)
.+|- +|-.|.|+ |.+++|.++..... +.....+-..+..|..+
T Consensus 113 p~Wa-~Iyy~LR~---G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 113 PIWA-LIYYCLRC---GDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EHHH-HHHHHHTT---T-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred ccHH-HHHHHHhc---CCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 3444 67788899 99999999993332 24445666777777665
No 306
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.07 E-value=1.2 Score=25.30 Aligned_cols=27 Identities=11% Similarity=0.082 Sum_probs=14.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 400 LLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 400 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
+..++.+.|++++|.+.|+++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344445555555555555555555443
No 307
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.03 E-value=17 Score=30.36 Aligned_cols=86 Identities=17% Similarity=0.119 Sum_probs=45.9
Q ss_pred HccCChHHHHHHHHHchhhcCCCCChhHHH-HHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036003 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYG-CMVDLLGRAGRLDEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLAK 414 (558)
Q Consensus 337 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~ 414 (558)
.+.++.+++..++..+. -+.|...... .-...+...|++.+|..+|+++ ...|....-..|+..|....+-..-.
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 45567777777777765 3344432222 2233456677777777777777 22333344445555555444444444
Q ss_pred HHHHHHHccCC
Q 036003 415 QVIERIFELDD 425 (558)
Q Consensus 415 ~~~~~~~~~~~ 425 (558)
..-+++++.++
T Consensus 98 ~~A~evle~~~ 108 (160)
T PF09613_consen 98 RYADEVLESGA 108 (160)
T ss_pred HHHHHHHhcCC
Confidence 44445555443
No 308
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.92 E-value=3.4 Score=38.09 Aligned_cols=101 Identities=16% Similarity=0.317 Sum_probs=67.0
Q ss_pred hCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC-C------CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCC
Q 036003 47 THLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE-P------DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLL 119 (558)
Q Consensus 47 ~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~-~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 119 (558)
.|...+..+...++..-... .+++.+...+-++.. | +... ...++.+.+ -++++++.++..=...|+-
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~---~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSR---EEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred cCCCcceeehhhhhhccccc---cchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcchhccc
Confidence 45556666666666666655 778887777766543 2 1111 122333332 2677888888777778888
Q ss_pred CCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhC
Q 036003 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154 (558)
Q Consensus 120 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g 154 (558)
||.++++.+|..+.+. ++..+|.++.-.|+...
T Consensus 133 ~dqf~~c~l~D~flk~--~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKK--ENYKDAASVVTEVMMQE 165 (418)
T ss_pred cchhhHHHHHHHHHhc--ccHHHHHHHHHHHHHHH
Confidence 8888888888888888 78888888777776654
No 309
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.57 E-value=5.5 Score=30.01 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 036003 308 HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370 (558)
Q Consensus 308 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 370 (558)
-+..+-++.+....+.|+.....+.+.+|.+.+++..|.++|+.++.+.+.. ...|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 3566777777778889999999999999999999999999999998865533 337777664
No 310
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.15 E-value=1.4 Score=25.65 Aligned_cols=32 Identities=34% Similarity=0.292 Sum_probs=21.7
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCChHHHH
Q 036003 147 HCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179 (558)
Q Consensus 147 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 179 (558)
|++.++.. +-+...|+.+...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444443 456777888888888888887775
No 311
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=86.05 E-value=12 Score=30.06 Aligned_cols=62 Identities=6% Similarity=-0.060 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHccC-CCC-cccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 395 ILWRTLLSSCSSHN---NLGLAKQVIERIFELD-DSH-GGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 395 ~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
.+--.+..++.+.. +..+.+.+++...+.. |.. -.....|.-++.+.|+|+.+.++.+.+.+
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 33334444554443 3455666666666522 222 12344455566677777777777766655
No 312
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.63 E-value=16 Score=35.97 Aligned_cols=125 Identities=12% Similarity=0.045 Sum_probs=64.1
Q ss_pred ccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036003 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHNNLGLAKQ 415 (558)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~ 415 (558)
..|++-.|-+-+......+.-.|+.... ....+...|+++.+...+... .+.....+..+++......|++++|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 3455555444333333322333333222 223345566667666666555 122334556666666666777777777
Q ss_pred HHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCccCCc
Q 036003 416 VIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPG 464 (558)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 464 (558)
..+-|+...-.++.....-...-...|-++++.-.|+++...+.+-+.|
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g 427 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG 427 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc
Confidence 7766666554444433333333344456677777777665544433333
No 313
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.62 E-value=0.65 Score=38.31 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=42.8
Q ss_pred HHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 036003 93 MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172 (558)
Q Consensus 93 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 172 (558)
+++.+.+.+.+.....+++.+...+..-+....+.++..|++. +..+...++++. .+..-...++..|.+.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~--~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKY--DPYEKLLEFLKT-------SNNYDLDKALRLCEKH 83 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCT--TTCCHHHHTTTS-------SSSS-CTHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhc--CCchHHHHHccc-------ccccCHHHHHHHHHhc
Confidence 3455555566666666666666554444455556666666655 444444444431 1112223455555555
Q ss_pred CChHHHHHHHhccC
Q 036003 173 SDVEAARRIFENIS 186 (558)
Q Consensus 173 g~~~~A~~~~~~~~ 186 (558)
|.+++|.-++.++.
T Consensus 84 ~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 84 GLYEEAVYLYSKLG 97 (143)
T ss_dssp TSHHHHHHHHHCCT
T ss_pred chHHHHHHHHHHcc
Confidence 55555555555543
No 314
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.44 E-value=6.9 Score=29.17 Aligned_cols=61 Identities=20% Similarity=0.186 Sum_probs=42.6
Q ss_pred ccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 036003 206 PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267 (558)
Q Consensus 206 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 267 (558)
.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++-++... ..+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 33556666677777788888888888888888888888888888776432 11333454443
No 315
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.37 E-value=2.3 Score=24.32 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHH
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMK 319 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 319 (558)
.|..+...+...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345556666666666666666666655
No 316
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.23 E-value=21 Score=29.80 Aligned_cols=48 Identities=15% Similarity=0.017 Sum_probs=22.6
Q ss_pred ccHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHhCCChHHHHHHHhccCC
Q 036003 138 EALEEGKQLHCFAIKLGLNSNL-YVCTTLINLYAECSDVEAARRIFENISE 187 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 187 (558)
++.+.+..+++-+.-. .|.. ..-..-...+.+.|++.+|+.+|+.+..
T Consensus 24 ~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 24 GDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred CChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 4555555555555443 2221 1111222344555666666666666544
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.14 E-value=2 Score=26.05 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 036003 395 ILWRTLLSSCSSHNNLGLAKQVIERIFE 422 (558)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 422 (558)
.+++.|...|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455566666666666666666666554
No 318
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.92 E-value=30 Score=31.40 Aligned_cols=269 Identities=13% Similarity=0.177 Sum_probs=130.7
Q ss_pred CCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHhCCChHHHHHHHhccCCCCcchH
Q 036003 117 GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL---YVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193 (558)
Q Consensus 117 g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 193 (558)
+-.||...-|..-.+-.-. ...+++|+.-|++.++..-.... .....++..+.+.|++++....+.++..
T Consensus 21 ~sEpdVDlENQYYnsK~l~-e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT------ 93 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLK-EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT------ 93 (440)
T ss_pred CCCCCcchHhhhhcccccc-ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH------
Confidence 4556665544433322211 15777888888887765322222 2334455666667777666666665431
Q ss_pred HHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH----HHh-CCCCchhHHHHHHH
Q 036003 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI----KKY-GLDKYVKVNTALID 268 (558)
Q Consensus 194 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~-~~~~~~~~~~~l~~ 268 (558)
.|....-.+.. ....+.++...+.+.+.+.-..+++.- .+. +-...-.+-..|..
T Consensus 94 --YIkSAVTrNyS------------------EKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgk 153 (440)
T KOG1464|consen 94 --YIKSAVTRNYS------------------EKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGK 153 (440)
T ss_pred --HHHHHHhcccc------------------HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhh
Confidence 11111111111 122233333322233322222222211 110 11122223345667
Q ss_pred HHHhcCCHHHHHHHHhccCCC---------------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCC-CCCCHHHHHHH
Q 036003 269 MHAKCGRLDDAVSVFDNMSGK---------------DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDEITFLGL 332 (558)
Q Consensus 269 ~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l 332 (558)
.|...|.+.+..++++++... -...|..-|+.|....+-.+...+|++...-. .-|-+.. ..+
T Consensus 154 l~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGv 232 (440)
T KOG1464|consen 154 LYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGV 232 (440)
T ss_pred hheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhH
Confidence 777777777777777665311 12356667788888888777777888765422 2333333 344
Q ss_pred HHHH-----HccCChHHHHHHHHHchhhc---CCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHh--C-CC--CCCHHHH
Q 036003 333 LYAC-----SHTGLVDEGWNYFYSMRDKY---GIVPG--IKHYGCMVDLLGRAGRLDEAYRFIDE--L-PI--KSTPILW 397 (558)
Q Consensus 333 l~~~-----~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~--~-~~--~~~~~~~ 397 (558)
|+-| .+.|.+++|-.-|-+.-+.+ |-+.. .--|..|.+++.+.|-- =|+. . |. .|.....
T Consensus 233 IRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKNdPEIlAM 307 (440)
T KOG1464|consen 233 IRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKNDPEILAM 307 (440)
T ss_pred HHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCCCHHHHHH
Confidence 4444 45678877754433333322 22221 12355566666665521 1111 1 22 3445667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 036003 398 RTLLSSCSSHNNLGLAKQVIER 419 (558)
Q Consensus 398 ~~l~~~~~~~g~~~~a~~~~~~ 419 (558)
..|+.+|.. ++..+.+++++.
T Consensus 308 Tnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 308 TNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHHHhc-ccHHHHHHHHHh
Confidence 788888864 355555554443
No 319
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.90 E-value=57 Score=34.58 Aligned_cols=197 Identities=16% Similarity=0.109 Sum_probs=109.4
Q ss_pred CCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHHHHHHHHh-cCCCchHHHHHHHHhHHCCCCCCcc---
Q 036003 48 HLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS-RSKTPIRAIFLFVELLNSGLLPDDY--- 123 (558)
Q Consensus 48 g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~--- 123 (558)
.-+.+...|..||..-.+| ++.+.+-+.--++.++.++-.+...+. ...+++.|...+++.....-+++..
T Consensus 25 ~~~~~l~~Y~kLI~~ai~C-----L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 25 KSEEQLKQYYKLIATAIKC-----LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred CChhhHHHHHHHHHHHHHH-----HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 3445567788888877777 333333111111234556666666666 5678888888888775543232221
Q ss_pred --cHHHHHHHHHhcCcccHHHHHHHHHHHHHhC----CCChHHHHHHH-HHHHHhCCChHHHHHHHhccCC-------CC
Q 036003 124 --SFPSLLKACACVGAEALEEGKQLHCFAIKLG----LNSNLYVCTTL-INLYAECSDVEAARRIFENISE-------PC 189 (558)
Q Consensus 124 --~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~-------~~ 189 (558)
.-..++..+.+. + ...|...+++.++.- ..+-...+..+ +..+...+|...|.+.++.+.. +-
T Consensus 100 ~~~~~ll~~i~~~~--~-~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 100 FRCQFLLARIYFKT--N-PKAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHhc--C-HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 112334445444 3 333888887766542 22333444444 3344344788888888877753 22
Q ss_pred cchHHHHHHHH--HHCCCccHHHHHHHHHHHCCC---------CCCHHHHHHHHHHHh--ccCChHHHHHHHHHHH
Q 036003 190 VVSYNAIITAY--ARSSRPNEALSLFRELQERNL---------KPTDVTMLSALSSCA--LLGSLDLGKWIHEYIK 252 (558)
Q Consensus 190 ~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~---------~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~ 252 (558)
...+-.++.+. .+.+..+++++.++++..... .|-..+|..++..++ ..|+++.+...++++.
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22333344443 345667778888777643221 234456666666554 5677777776666554
No 320
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.52 E-value=47 Score=33.31 Aligned_cols=175 Identities=9% Similarity=0.066 Sum_probs=109.0
Q ss_pred CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 036003 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267 (558)
Q Consensus 188 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 267 (558)
-|....-+++..+.++-++.-...+..+|..-| .+...|..++.+|... .-++-..+++++.+..+. |...-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 355566778888888888888888888888854 5777888888888887 566777888888877543 233334455
Q ss_pred HHHHhcCCHHHHHHHHhccCCC------CH---HhHHHHHHHHHHCCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 036003 268 DMHAKCGRLDDAVSVFDNMSGK------DT---QAWSAMIVAYATHGQGHKSILMFEEMMK-AQVSPDEITFLGLLYACS 337 (558)
Q Consensus 268 ~~~~~~g~~~~A~~~~~~~~~~------~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~ 337 (558)
..|-+ ++.+.+..+|.++..+ +. ..|..+...- ..+.+..+.+..+... .|..--...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55555 7888888887776422 11 1344444321 2345556666555554 233333445555556667
Q ss_pred ccCChHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 036003 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371 (558)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 371 (558)
...++++|.+++..+.+ .-..|...-..++.-
T Consensus 217 ~~eN~~eai~Ilk~il~--~d~k~~~ar~~~i~~ 248 (711)
T COG1747 217 ENENWTEAIRILKHILE--HDEKDVWARKEIIEN 248 (711)
T ss_pred cccCHHHHHHHHHHHhh--hcchhhhHHHHHHHH
Confidence 77777777777777765 223344444444443
No 321
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.26 E-value=65 Score=34.73 Aligned_cols=215 Identities=14% Similarity=-0.015 Sum_probs=119.5
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchh-------HHHHH-HHHHHhcCCHHHHHHHHhccCC--------CCHHhHHHHHH
Q 036003 236 ALLGSLDLGKWIHEYIKKYGLDKYVK-------VNTAL-IDMHAKCGRLDDAVSVFDNMSG--------KDTQAWSAMIV 299 (558)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~ 299 (558)
....++++|..++.++...-..|+.. .++.+ .......|++++|.++-+.... .....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 35678999999988886553333221 22222 1223446888888887766542 25667888888
Q ss_pred HHHHCCChHHHHHHHHHHHHCCCCCCHHHHH---HH--HHHHHccCC--hHHHHHHHHHchhhcCCC-----CChhHHHH
Q 036003 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFL---GL--LYACSHTGL--VDEGWNYFYSMRDKYGIV-----PGIKHYGC 367 (558)
Q Consensus 300 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---~l--l~~~~~~g~--~~~a~~~~~~~~~~~~~~-----~~~~~~~~ 367 (558)
+..-.|++++|..+.++..+.--.-+...|. .+ ...+...|. ..+....|......+... +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8889999999999888766532222332222 22 123445663 333334444443321111 12234445
Q ss_pred HHHHHhhcCCHHHHHHHH----HhC-CCCCCH--HH--HHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-cc-cHH----
Q 036003 368 MVDLLGRAGRLDEAYRFI----DEL-PIKSTP--IL--WRTLLSSCSSHNNLGLAKQVIERIFELDDSH-GG-DYV---- 432 (558)
Q Consensus 368 li~~~~~~g~~~~A~~~~----~~~-~~~~~~--~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~-~~~---- 432 (558)
+..++.+ ++.+..-. .-. ...|.. .. +..|+......|+.++|...+.++......+ +. -|.
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 5555555 33332222 221 112222 22 2356778888999999999999987654222 22 122
Q ss_pred -hHHHHHHhcCChHHHHHHHHH
Q 036003 433 -ILSNLCARAGRWEDVDYLRKL 453 (558)
Q Consensus 433 -~l~~~~~~~g~~~~A~~~~~~ 453 (558)
.-.......|+.+++...+.+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 223334567888887776665
No 322
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=84.15 E-value=53 Score=33.60 Aligned_cols=339 Identities=13% Similarity=0.064 Sum_probs=195.8
Q ss_pred CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHH-HHhcCcccHHHHHHHHHHHHHhCCCChHHHHH
Q 036003 85 PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA-CACVGAEALEEGKQLHCFAIKLGLNSNLYVCT 163 (558)
Q Consensus 85 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 163 (558)
-+...|..+|..--...+.+.+..++..++.. .|-..-|=.-..- =.+. |..+.+.++|++.+. |++.+...|.
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~kl--g~~~~s~~Vfergv~-aip~SvdlW~ 117 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKL--GNAENSVKVFERGVQ-AIPLSVDLWL 117 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHH-hhhhHHHHHH
Confidence 35566777776655555666777777777653 4554433322222 2334 888899999998886 5677777777
Q ss_pred HHHHHHH-hCCChHHHHHHHhccCC------CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036003 164 TLINLYA-ECSDVEAARRIFENISE------PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236 (558)
Q Consensus 164 ~ll~~~~-~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 236 (558)
..+..+. ..|+.+...+.|+.... .+...|...|.--..++++.....+|++.++. |. ..|+..-.-|.
T Consensus 118 ~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~ 193 (577)
T KOG1258|consen 118 SYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFK 193 (577)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHH
Confidence 6665444 45777778888887764 45667888888888888999999999998874 22 22222222221
Q ss_pred ---cc------CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhccCCC-CH--HhH-------HH
Q 036003 237 ---LL------GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG-RLDDAVSVFDNMSGK-DT--QAW-------SA 296 (558)
Q Consensus 237 ---~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~-~~--~~~-------~~ 296 (558)
+. ...+++.++-....... .....+ ..+.-....+....+ +. ..- +.
T Consensus 194 ~~l~~~~~~~l~~~d~~~~l~~~~~~~~-------------~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~ 260 (577)
T KOG1258|consen 194 QLLNQNEEKILLSIDELIQLRSDVAERS-------------KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSI 260 (577)
T ss_pred HHHhcCChhhhcCHHHHHHHhhhHHhhh-------------hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHH
Confidence 11 12333333322222110 000001 111111111222111 00 001 11
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHH
Q 036003 297 MIVAYATHGQGHKSILMFEEMMKA---QVSP----DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369 (558)
Q Consensus 297 li~~~~~~~~~~~a~~~~~~m~~~---g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 369 (558)
.-..+-...........|+.-++. .++| +..+|..-+.--...|+.+...-+|++..- .+..-...|--.+
T Consensus 261 ~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~ 338 (577)
T KOG1258|consen 261 HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYA 338 (577)
T ss_pred HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHH
Confidence 111222222233333344443332 1223 346788888888889999999999888875 3444455666666
Q ss_pred HHHhhcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCCh
Q 036003 370 DLLGRAGRLDEAYRFIDEL-----PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444 (558)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 444 (558)
.-....|+.+-|..++... +..|....+.+.+ .-..|+++.|..+++++.+.-|.....-..-+....+.|+.
T Consensus 339 ~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~ 416 (577)
T KOG1258|consen 339 RWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNL 416 (577)
T ss_pred HHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcch
Confidence 6666778888888777665 3334433333332 34568999999999999877666655555666677888888
Q ss_pred HHHHH
Q 036003 445 EDVDY 449 (558)
Q Consensus 445 ~~A~~ 449 (558)
+.+..
T Consensus 417 ~~~~~ 421 (577)
T KOG1258|consen 417 EDANY 421 (577)
T ss_pred hhhhH
Confidence 88874
No 323
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.75 E-value=15 Score=27.42 Aligned_cols=63 Identities=14% Similarity=0.225 Sum_probs=49.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 036003 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370 (558)
Q Consensus 306 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 370 (558)
+.-++.+-++.+....+.|+.....+.+++|-+.+++..|.++|+.++.+.+. +...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 45567777788888888999999999999999999999999999988865333 4456666654
No 324
>PRK10941 hypothetical protein; Provisional
Probab=83.48 E-value=15 Score=33.98 Aligned_cols=62 Identities=13% Similarity=0.030 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
..+.+-.+|.+.++++.|+++.+.++...|+++.-+.--+-.|.+.|.+..|..-++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 44567778899999999999999999999999988888899999999999999988887764
No 325
>PRK09687 putative lyase; Provisional
Probab=83.20 E-value=40 Score=31.49 Aligned_cols=138 Identities=11% Similarity=-0.037 Sum_probs=65.5
Q ss_pred CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHH
Q 036003 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG-SLDLGKWIHEYIKKYGLDKYVKVNTAL 266 (558)
Q Consensus 188 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l 266 (558)
++..+-...+.++.+.++ .+++..+-.+.+. +|...-...+.++.+.+ +-..+...+..+.. .++..+-...
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A 212 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEA 212 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHH
Confidence 333344444445544443 3444444444432 33333333334444332 12233333333332 3344555555
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036003 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337 (558)
Q Consensus 267 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 337 (558)
+.++.+.|+....-.+.+.+..++ ..-..+.++...|.. +|+..+.++.+. .||...-...+.+|.
T Consensus 213 ~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 213 IIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 666666666433333333333333 233566677777774 577777777763 346555555555543
No 326
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.13 E-value=10 Score=28.70 Aligned_cols=59 Identities=20% Similarity=0.190 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 036003 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267 (558)
Q Consensus 208 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 267 (558)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++++-++...- .....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHH
Confidence 4556666677777888888888999999999999999998888876532 2222555544
No 327
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.80 E-value=1.5 Score=23.60 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=13.8
Q ss_pred HHhHHHHHHhcCChHHHHHHHH
Q 036003 431 YVILSNLCARAGRWEDVDYLRK 452 (558)
Q Consensus 431 ~~~l~~~~~~~g~~~~A~~~~~ 452 (558)
...+...+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4456666666666666666654
No 328
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.39 E-value=3.2 Score=22.70 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 036003 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDD 425 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 425 (558)
.|..+...+...|+++.|...+++.++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555666666666666666655544
No 329
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.14 E-value=19 Score=27.10 Aligned_cols=88 Identities=14% Similarity=0.089 Sum_probs=59.8
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 217 (558)
..-++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+....||...|-+|.. .+.|..+++..-+.+|.
T Consensus 19 HcHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred hHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 4566777777776654422 33333344556778899999999999888899888877654 46677777777777777
Q ss_pred HCCCCCCHHHHH
Q 036003 218 ERNLKPTDVTML 229 (558)
Q Consensus 218 ~~~~~p~~~~~~ 229 (558)
..| .|....|.
T Consensus 96 ~sg-~p~lq~Fa 106 (115)
T TIGR02508 96 ASG-DPRLQTFV 106 (115)
T ss_pred hCC-CHHHHHHH
Confidence 776 45544443
No 330
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.55 E-value=6.6 Score=34.32 Aligned_cols=73 Identities=12% Similarity=-0.006 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc---ccHHhHHH
Q 036003 364 HYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG---GDYVILSN 436 (558)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~ 436 (558)
+.+..++.+.+.+++++|+...++- +.+| |..+-..+++.++-.|++++|..-++-+-++.|... ..|..++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3445567777888888888777654 4455 445556677888888888888888887777776542 34444444
No 331
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.43 E-value=0.72 Score=38.02 Aligned_cols=83 Identities=10% Similarity=0.114 Sum_probs=45.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHH
Q 036003 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310 (558)
Q Consensus 231 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 310 (558)
++..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..+.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3445555566666666666666655555566677777777777666666666663222 2223344444455555554
Q ss_pred HHHHHH
Q 036003 311 ILMFEE 316 (558)
Q Consensus 311 ~~~~~~ 316 (558)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 444443
No 332
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.37 E-value=4.7 Score=37.65 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=60.5
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhc
Q 036003 297 MIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375 (558)
Q Consensus 297 li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 375 (558)
-..-|.++|.+++|+..|..... +.| |.+++..-..+|.+...+..|+.-...... .-...+.+|.+.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR 171 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSRR 171 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHHH
Confidence 35679999999999999999877 566 889999999999999999888776655543 112345556555
Q ss_pred -------CCHHHHHHHHHhC-CCCCC
Q 036003 376 -------GRLDEAYRFIDEL-PIKST 393 (558)
Q Consensus 376 -------g~~~~A~~~~~~~-~~~~~ 393 (558)
|...+|.+-++.. ...|+
T Consensus 172 ~~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 172 MQARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 4455554444443 44555
No 333
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=80.70 E-value=43 Score=30.98 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=26.7
Q ss_pred CChHHHHHHHHHHHHhCCChHHHHHHHhccCC-----CCcchHHHHHHHHHHCCCccH
Q 036003 156 NSNLYVCTTLINLYAECSDVEAARRIFENISE-----PCVVSYNAIITAYARSSRPNE 208 (558)
Q Consensus 156 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~ 208 (558)
.++..+....+..+++.+++..-.++++.... .|...|..+|......|+..-
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~ 256 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEV 256 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHH
Confidence 34444444555555555555555555544432 344455555555555555433
No 334
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.65 E-value=4.6 Score=24.33 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHH
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMK 319 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 319 (558)
+++.+...|...|++++|..++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455666666666666666666665543
No 335
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.41 E-value=2.1 Score=24.31 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=24.0
Q ss_pred cHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 430 DYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
++..++.+|.+.|++++|.+.|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3567888999999999999999998763
No 336
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.39 E-value=5.9 Score=36.24 Aligned_cols=60 Identities=17% Similarity=-0.016 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
+++.....|...|.+.+|.++.++++..+|-+...+-.|+..|...|+--+|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344456788999999999999999999999999999999999999999888888777774
No 337
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.13 E-value=86 Score=33.27 Aligned_cols=125 Identities=14% Similarity=0.058 Sum_probs=66.4
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHccCCC----CCcccHH----HH-HHHHhcCCCchHHHHHHHHhHHCC---CCCCccc
Q 036003 57 TKLINFCTQNPTTSSMEHAHLLFDRIPE----PDIVLFN----TM-ARGYSRSKTPIRAIFLFVELLNSG---LLPDDYS 124 (558)
Q Consensus 57 ~~li~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~----~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~ 124 (558)
..++..|.+. +... |.+..++..+ .....|. -+ +..+...+++..|++.++.+.... ..|-...
T Consensus 104 ~ll~~i~~~~---~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v 179 (608)
T PF10345_consen 104 FLLARIYFKT---NPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFV 179 (608)
T ss_pred HHHHHHHHhc---CHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence 3455666665 4443 7776666443 1111222 22 222223378888888887775532 2334455
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhCC---------CChHHHHHHHHHHH--HhCCChHHHHHHHhcc
Q 036003 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGL---------NSNLYVCTTLINLY--AECSDVEAARRIFENI 185 (558)
Q Consensus 125 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~---------~~~~~~~~~ll~~~--~~~g~~~~A~~~~~~~ 185 (558)
+..++.+......+..+.+.+.++.+..... .|...++..+++.+ ...|+++.+...++++
T Consensus 180 ~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 180 LASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555666555433556666666666644321 23555666666554 4566666666665554
No 338
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.00 E-value=32 Score=28.26 Aligned_cols=48 Identities=15% Similarity=0.021 Sum_probs=25.5
Q ss_pred ccHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHhCCChHHHHHHHhccCC
Q 036003 138 EALEEGKQLHCFAIKLGLNSNL-YVCTTLINLYAECSDVEAARRIFENISE 187 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 187 (558)
++.+++..+++.|.-. .|+. ..-..-...+.+.|++++|.++|+++.+
T Consensus 24 ~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 24 ADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred CCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 5666666666665543 2221 1112223445666667777777766665
No 339
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.87 E-value=27 Score=30.37 Aligned_cols=73 Identities=12% Similarity=-0.016 Sum_probs=42.5
Q ss_pred cHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhcCCHHHHH
Q 036003 207 NEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY---GLDKYVKVNTALIDMHAKCGRLDDAV 280 (558)
Q Consensus 207 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~ 280 (558)
+.|.+.|-.+...+..-++.....+...| ...+.+++..++.+..+. +-.+|+.++..|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 55666666666655443433333333333 356666776666666543 22556667777777777777776664
No 340
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.83 E-value=1.5e+02 Score=36.03 Aligned_cols=146 Identities=11% Similarity=0.062 Sum_probs=85.5
Q ss_pred HHHHHhcCCCchHHHHHHHHh----HHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 036003 93 MARGYSRSKTPIRAIFLFVEL----LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINL 168 (558)
Q Consensus 93 li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 168 (558)
+..+-.+.+.+.+|+..++.- .+... ...-|..+...|+.. ++++....+...... .|+ .++ -|-.
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~--~e~l~fllq~lY~~i--~dpDgV~Gv~~~r~a---~~s--l~~-qil~ 1458 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKET--EEALYFLLQNLYGSI--HDPDGVEGVSARRFA---DPS--LYQ-QILE 1458 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHH--HHHHHHHHHHHHHhc--CCcchhhhHHHHhhc---Ccc--HHH-HHHH
Confidence 334555678888888888873 22211 223344444477777 788877777654111 222 222 3344
Q ss_pred HHhCCChHHHHHHHhccCC--CC-cchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCChHHH
Q 036003 169 YAECSDVEAARRIFENISE--PC-VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLS-ALSSCALLGSLDLG 244 (558)
Q Consensus 169 ~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a 244 (558)
....|+++.|...|+.+.+ |+ ..+++-++......|.++.++-..+-.... ..+....++. -+.+-=+.+++|..
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 5668999999999999987 33 556777777777777887777655554433 2222222222 23333456666666
Q ss_pred HHHHH
Q 036003 245 KWIHE 249 (558)
Q Consensus 245 ~~~~~ 249 (558)
...+.
T Consensus 1538 e~~l~ 1542 (2382)
T KOG0890|consen 1538 ESYLS 1542 (2382)
T ss_pred hhhhh
Confidence 55544
No 341
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.76 E-value=3.5 Score=23.62 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=24.8
Q ss_pred ccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 429 GDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
.+|..++..|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3578899999999999999999998765
No 342
>PRK11619 lytic murein transglycosylase; Provisional
Probab=79.29 E-value=92 Score=33.16 Aligned_cols=95 Identities=8% Similarity=-0.181 Sum_probs=59.3
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC---CCCcccHHhHHHHHHhcCChH
Q 036003 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD---DSHGGDYVILSNLCARAGRWE 445 (558)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 445 (558)
+..+...|....|...+..+....+......+.......|.++.+.....+....+ -.-+..|...+..+.+.-..+
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 44566778888888888776323455556666666678888888887776543321 111335777777777766677
Q ss_pred HHHHHHHHHHhCCCccCC
Q 036003 446 DVDYLRKLMKDRGVLKVP 463 (558)
Q Consensus 446 ~A~~~~~~m~~~g~~~~~ 463 (558)
.++-.---..+.++.|+.
T Consensus 494 ~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 494 QSYAMAIARQESAWNPKA 511 (644)
T ss_pred HHHHHHHHHHhcCCCCCC
Confidence 666443333467776654
No 343
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=79.24 E-value=4.6 Score=35.76 Aligned_cols=85 Identities=12% Similarity=0.063 Sum_probs=41.0
Q ss_pred HHccCChHHHHHHHHHchhhcCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHH
Q 036003 336 CSHTGLVDEGWNYFYSMRDKYGIVPGI-KHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTPI-LWRTLLSSCSSHNNLGL 412 (558)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~ 412 (558)
|.....++.|...|.+.. .+.|+. .-|..=+.++.+..+++.+..=-.+. .+.||.+ ....+..+......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 334445566666555544 334444 23334444555555555554333332 3344432 23334444555566666
Q ss_pred HHHHHHHHHcc
Q 036003 413 AKQVIERIFEL 423 (558)
Q Consensus 413 a~~~~~~~~~~ 423 (558)
|+..+.++..+
T Consensus 97 aI~~Lqra~sl 107 (284)
T KOG4642|consen 97 AIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHH
Confidence 66666666443
No 344
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.00 E-value=5.1 Score=26.25 Aligned_cols=32 Identities=9% Similarity=0.112 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCcc
Q 036003 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429 (558)
Q Consensus 398 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 429 (558)
..+.-++.+.|++++|.+..+.+++.+|.+..
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 34667888999999999999999999998743
No 345
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=78.61 E-value=40 Score=28.52 Aligned_cols=37 Identities=8% Similarity=0.046 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHH
Q 036003 146 LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF 182 (558)
Q Consensus 146 ~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 182 (558)
+.+.+.+.+++|+...+..+++.+.+.|++..-..++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3444445566666666666666666666555444444
No 346
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.99 E-value=35 Score=29.59 Aligned_cols=94 Identities=12% Similarity=0.031 Sum_probs=50.7
Q ss_pred HccCChHHHHHHHHHchhhcCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 036003 337 SHTGLVDEGWNYFYSMRDKYGIVPG-----IKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST-PILWRTLLSSCSSHNN 409 (558)
Q Consensus 337 ~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~ 409 (558)
...|++++|..-|...... +++. ...|..-.-++.+.+.++.|++-..+. .+.|. ......-..+|.+...
T Consensus 106 F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 3455566665555555542 2221 122333334555666666665555443 33332 1122222346677778
Q ss_pred HHHHHHHHHHHHccCCCCcccHH
Q 036003 410 LGLAKQVIERIFELDDSHGGDYV 432 (558)
Q Consensus 410 ~~~a~~~~~~~~~~~~~~~~~~~ 432 (558)
+++|++-|+++++.+|....+-.
T Consensus 184 ~eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 184 YEEALEDYKKILESDPSRREARE 206 (271)
T ss_pred HHHHHHHHHHHHHhCcchHHHHH
Confidence 88888888888888887644333
No 347
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.81 E-value=25 Score=30.56 Aligned_cols=72 Identities=22% Similarity=0.144 Sum_probs=33.3
Q ss_pred hHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCChHHH
Q 036003 104 IRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL---GLNSNLYVCTTLINLYAECSDVEAA 178 (558)
Q Consensus 104 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~ll~~~~~~g~~~~A 178 (558)
+.|++.|-.+...+.--++.....|..-|. . .+.+++..++...++. +-.+|+..+.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-k--rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-K--RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-c--cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 345555555544433323333333333332 2 4555555555555543 1134455555555555555555544
No 348
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=77.73 E-value=42 Score=28.36 Aligned_cols=98 Identities=9% Similarity=0.064 Sum_probs=43.1
Q ss_pred HHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--ChHHHHHHHhccC
Q 036003 109 LFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS--DVEAARRIFENIS 186 (558)
Q Consensus 109 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~ 186 (558)
.++.+.+.++.|+...+..++..+... |.+.. +..+++.++-+|.......+-.+.... -..-|.+.+.++.
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~--~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRN--GQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHc--CCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 344444455556666666666666555 44332 223333344333333322222121111 0222333333332
Q ss_pred CCCcchHHHHHHHHHHCCCccHHHHHHHHH
Q 036003 187 EPCVVSYNAIITAYARSSRPNEALSLFREL 216 (558)
Q Consensus 187 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 216 (558)
..+..++..+...|++-+|+++.+..
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 23444555566666666666665553
No 349
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=77.72 E-value=55 Score=29.69 Aligned_cols=75 Identities=12% Similarity=0.001 Sum_probs=44.6
Q ss_pred HHHHHHCCCccHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 036003 197 ITAYARSSRPNEALSLFRELQERNL--KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271 (558)
Q Consensus 197 i~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 271 (558)
+..-.+.|++++|.+.|+.+..... +-...+...++.++-+.++++.|....++..+.-......-|...|.+++
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 3445667778888888877775421 11234555566666777777777777777766543333334444444444
No 350
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.86 E-value=11 Score=33.08 Aligned_cols=58 Identities=14% Similarity=0.022 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhcc
Q 036003 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI 185 (558)
Q Consensus 125 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 185 (558)
.+.-++.+.+. +++.+++...++-++.. +.|...-..++..|+-.|++++|..-++-.
T Consensus 4 l~~t~seLL~~--~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 4 LRDTISELLDD--NSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred hHHHHHHHHHh--ccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 34445555555 66777777666666543 445556666777777777777776555544
No 351
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=76.85 E-value=40 Score=27.65 Aligned_cols=88 Identities=13% Similarity=0.162 Sum_probs=49.3
Q ss_pred HHHhCCCCCh--hHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---------CCcccHHHHHHHHhcCCC-chHHHHHHH
Q 036003 44 TIKTHLQNDL--NVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---------PDIVLFNTMARGYSRSKT-PIRAIFLFV 111 (558)
Q Consensus 44 ~~~~g~~~~~--~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-~~~A~~~~~ 111 (558)
|.+.+..++. ...|.++.-.+.. +++.-...+++.+.. .+-.+|..++.+.++... --.+..+|.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~---~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~ 104 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASY---QNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFN 104 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHH
Confidence 4444454443 3456666666655 666666666665532 344456666666655444 334555666
Q ss_pred HhHHCCCCCCcccHHHHHHHHHh
Q 036003 112 ELLNSGLLPDDYSFPSLLKACAC 134 (558)
Q Consensus 112 ~m~~~g~~p~~~~~~~ll~~~~~ 134 (558)
.|++.+.+++..-|..+|.++.+
T Consensus 105 ~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 105 FLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHc
Confidence 66655566666666666666543
No 352
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.13 E-value=51 Score=28.53 Aligned_cols=114 Identities=14% Similarity=0.031 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCChHHHHHHHHHchhhcCCCCCh----hHHHHHHHHHhhcCCHHHHH
Q 036003 309 KSILMFEEMMKAQVSPDEITFL--GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI----KHYGCMVDLLGRAGRLDEAY 382 (558)
Q Consensus 309 ~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~ 382 (558)
+.....+++....-......+. .+...+...+++++|...++..... +.|. ..--.|.+.....|.+++|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4555555555532121111222 2344567788888888888776642 1121 12223456677888888888
Q ss_pred HHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 036003 383 RFIDELPIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425 (558)
Q Consensus 383 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 425 (558)
+.++..... -.......-.+.+...|+-++|...|+++++.++
T Consensus 147 ~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 147 KTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 888876311 1223334445678888888888888888888763
No 353
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.68 E-value=33 Score=35.06 Aligned_cols=98 Identities=12% Similarity=0.044 Sum_probs=47.1
Q ss_pred HhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 036003 170 AECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHE 249 (558)
Q Consensus 170 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 249 (558)
.+.|+++.|.++..+. .+..-|..|..+..+.+++..|.+.|..... |..|+-.+...|+.+....+-.
T Consensus 648 l~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred hhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 3445555555554433 2444466666666666666666665554432 3344444555555554444444
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 036003 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFD 284 (558)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 284 (558)
...+.|.. |.-..+|...|+++++.+++.
T Consensus 717 ~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 717 LAKKQGKN------NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHhhccc------chHHHHHHHcCCHHHHHHHHH
Confidence 44443311 122233444555555555443
No 354
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.61 E-value=53 Score=28.44 Aligned_cols=89 Identities=11% Similarity=0.065 Sum_probs=52.5
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHh--HHHHHHHHHHCCChH
Q 036003 233 SSCALLGSLDLGKWIHEYIKKYGLDKY--VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA--WSAMIVAYATHGQGH 308 (558)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~ 308 (558)
..+...+++++|...++.........+ ...--.|.......|.+|+|+..++....++-.. ...-...+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 345556666666666655543211111 1111224556667777888888777777664333 344456677778888
Q ss_pred HHHHHHHHHHHCC
Q 036003 309 KSILMFEEMMKAQ 321 (558)
Q Consensus 309 ~a~~~~~~m~~~g 321 (558)
+|..-|++..+.+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 8888887777764
No 355
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=74.98 E-value=1.2e+02 Score=32.18 Aligned_cols=184 Identities=18% Similarity=0.254 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHH----------HHHHHHHHhccCChHHHHHHHHHHHHhC--CCCc
Q 036003 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT----------MLSALSSCALLGSLDLGKWIHEYIKKYG--LDKY 259 (558)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----------~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~ 259 (558)
+...++-.|....+++..+++.+.++.. ||..- |...++---+-|+-++|..+.-.+.+.. +.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 4455666777778888888888888763 43322 3334444445677788877776665543 3333
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHH
Q 036003 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT---FLGLLYAC 336 (558)
Q Consensus 260 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~ 336 (558)
+||-+|++ |+.|- +-..|...+..+.|.++|++..+ +.|+..+ +..|+.+-
T Consensus 280 ---------m~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 280 ---------MYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred ---------eeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Confidence 23444442 22221 11233444556677888887776 5665532 33343332
Q ss_pred HccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036003 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQV 416 (558)
Q Consensus 337 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 416 (558)
.+ .++...+ +..- | ..|-..+++.|.+++-.++++-. + .+.+-.-.+++.+|.+.
T Consensus 334 G~--~Fens~E----lq~I-g--------mkLn~LlgrKG~leklq~YWdV~-------~---y~~asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 334 GE--HFENSLE----LQQI-G--------MKLNSLLGRKGALEKLQEYWDVA-------T---YFEASVLANDYQKAIQA 388 (1226)
T ss_pred hh--hccchHH----HHHH-H--------HHHHHHhhccchHHHHHHHHhHH-------H---hhhhhhhccCHHHHHHH
Confidence 21 1111111 1110 1 12334456777777776666532 1 22233445678888888
Q ss_pred HHHHHccCCCCcc
Q 036003 417 IERIFELDDSHGG 429 (558)
Q Consensus 417 ~~~~~~~~~~~~~ 429 (558)
.+.|.++.|+...
T Consensus 389 ae~mfKLk~P~WY 401 (1226)
T KOG4279|consen 389 AEMMFKLKPPVWY 401 (1226)
T ss_pred HHHHhccCCceeh
Confidence 8888888877543
No 356
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=74.91 E-value=59 Score=28.68 Aligned_cols=158 Identities=11% Similarity=0.018 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHH-hHHHH--HHHHHHCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHH
Q 036003 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ-AWSAM--IVAYATHGQGHKSILMFEEMMKAQV-SPDEITFLGLLYA 335 (558)
Q Consensus 260 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l--i~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~ 335 (558)
+.+||-|.--+...|+++.|.+.|+...+-|+. -|..+ .-++.-.|++.-|.+-+...-+... .|=...|.-++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-- 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-- 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH--
Confidence 567787777788888888888888887765432 12222 1223445778877776666655431 11112232222
Q ss_pred HHccCChHHHHHHHHHchhhcCCCCChhHHHHHHH-HHhhcCCHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcC
Q 036003 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD-LLGRAGRLDEAYRFIDELPIKS------TPILWRTLLSSCSSHN 408 (558)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~l~~~~~~~g 408 (558)
-+.-++.+|..-+.+-.+ + .|..-|...|- .|...=..+.+.+-........ -..||--+.+-+...|
T Consensus 177 -E~k~dP~~A~tnL~qR~~--~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 177 -EQKLDPKQAKTNLKQRAE--K--SDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred -HhhCCHHHHHHHHHHHHH--h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 223355555543332222 2 23344443332 2222212222222222211111 1246777888899999
Q ss_pred CHHHHHHHHHHHHccC
Q 036003 409 NLGLAKQVIERIFELD 424 (558)
Q Consensus 409 ~~~~a~~~~~~~~~~~ 424 (558)
+.++|..+|+-++..+
T Consensus 252 ~~~~A~~LfKLaiann 267 (297)
T COG4785 252 DLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999999999888654
No 357
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.83 E-value=34 Score=25.86 Aligned_cols=86 Identities=15% Similarity=0.181 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHC
Q 036003 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320 (558)
Q Consensus 241 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 320 (558)
.++|.-|-+.+...+-. ...+--+-+..+...|++++|..+.+.+..||...|-++-. .+.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 44555555544443311 22222223445667788999988888888888888876654 4667777777777777776
Q ss_pred CCCCCHHHHH
Q 036003 321 QVSPDEITFL 330 (558)
Q Consensus 321 g~~p~~~~~~ 330 (558)
| .|....|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 5 34444443
No 358
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.13 E-value=7.8 Score=39.06 Aligned_cols=98 Identities=13% Similarity=0.054 Sum_probs=64.5
Q ss_pred ccCChHHHHHHHHHchhhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHH
Q 036003 338 HTGLVDEGWNYFYSMRDKYGIVPG--IKHYGCMVDLLGRAGRLDEAYRFIDEL-P-IKSTPILWRTLLSSCSSHNNLGLA 413 (558)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a 413 (558)
-.|+...|...+..... ..|. -.....|...+.+.|..-+|-.++.+. . ....+.++..+.+++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 35677777777766653 2332 223345566666777777777776654 1 133456777778888888888888
Q ss_pred HHHHHHHHccCCCCcccHHhHHHHH
Q 036003 414 KQVIERIFELDDSHGGDYVILSNLC 438 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~~ 438 (558)
++.|+++++++|+++..-+.|...-
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHH
Confidence 8888888888888877766665443
No 359
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.40 E-value=6.2 Score=24.63 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=22.2
Q ss_pred HhHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036003 432 VILSNLCARAGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 432 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (558)
..|..+|...|+.+.|.++++++...|-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 3577888999999999999988876443
No 360
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.13 E-value=31 Score=30.93 Aligned_cols=89 Identities=12% Similarity=-0.040 Sum_probs=65.1
Q ss_pred HHHHhhcCCHHHHHHHHHhC---------CCCCCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 369 VDLLGRAGRLDEAYRFIDEL---------PIKSTPI-----------LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~~---------~~~~~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
.+-+.+.|++.+|..-|.+. +.+|... .+-.+..++...|++-++++.-.+++...|.+.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 34455666666665555443 3344332 233344566678999999999999999999999
Q ss_pred ccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 429 GDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
.+|..-+.+.+..=+.++|..-|.+..+.
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 99999999988888889999988888763
No 361
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=71.24 E-value=12 Score=31.71 Aligned_cols=66 Identities=12% Similarity=0.093 Sum_probs=39.0
Q ss_pred CCCCCH-HHHHHHHHHHHhcC-----------CHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 389 PIKSTP-ILWRTLLSSCSSHN-----------NLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 389 ~~~~~~-~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
.+.|+. .++..+..++...+ .+++|...|+++.+.+|.+ ..|..-+.+. .+|-++..++.+
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~ 135 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHK 135 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHH
Confidence 345553 55666666655433 2677777888888888887 5566555554 357778888877
Q ss_pred CCCcc
Q 036003 457 RGVLK 461 (558)
Q Consensus 457 ~g~~~ 461 (558)
.+...
T Consensus 136 ~~~~~ 140 (186)
T PF06552_consen 136 QGLGQ 140 (186)
T ss_dssp SSS--
T ss_pred HHhhh
Confidence 76543
No 362
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=71.00 E-value=1.8e+02 Score=32.59 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=22.1
Q ss_pred CCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHHHHHHHHh
Q 036003 50 QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98 (558)
Q Consensus 50 ~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~ 98 (558)
++++.+-..-+..+.+. +..+....+...+..+|...-...+.++.
T Consensus 632 D~d~~VR~~Av~~L~~~---~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~ 677 (897)
T PRK13800 632 DPDPGVRRTAVAVLTET---TPPGFGPALVAALGDGAAAVRRAAAEGLR 677 (897)
T ss_pred CCCHHHHHHHHHHHhhh---cchhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 55566666666666665 54433333443443444444334444443
No 363
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=70.76 E-value=9.6 Score=37.54 Aligned_cols=87 Identities=13% Similarity=0.054 Sum_probs=66.0
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHH
Q 036003 370 DLLGRAGRLDEAYRFIDEL-PIKSTPILWRTL-LSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447 (558)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 447 (558)
.-+.+.+.++.|..++.+. ...|+-..|.+. ..++.+.+++..|+.=+.++++.+|.....|..-+.++.+.+.+.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 3455667777887777776 556655444332 36778888899999989999999988888888888888888888888
Q ss_pred HHHHHHHHh
Q 036003 448 DYLRKLMKD 456 (558)
Q Consensus 448 ~~~~~~m~~ 456 (558)
...|+....
T Consensus 92 ~~~l~~~~~ 100 (476)
T KOG0376|consen 92 LLDLEKVKK 100 (476)
T ss_pred HHHHHHhhh
Confidence 888887654
No 364
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.42 E-value=15 Score=26.32 Aligned_cols=42 Identities=10% Similarity=0.091 Sum_probs=17.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChHHHH
Q 036003 305 GQGHKSILMFEEMMKAQVSPDE--ITFLGLLYACSHTGLVDEGW 346 (558)
Q Consensus 305 ~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~ 346 (558)
++.++|+..|+...+.-..|.. .++..|+.+++..|++.+++
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREML 63 (80)
T ss_pred chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433222211 23444444444444444433
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.03 E-value=9.7 Score=27.23 Aligned_cols=45 Identities=13% Similarity=0.056 Sum_probs=30.6
Q ss_pred hcCCHHHHHHHHHHHHccCCCCcc---cHHhHHHHHHhcCChHHHHHH
Q 036003 406 SHNNLGLAKQVIERIFELDDSHGG---DYVILSNLCARAGRWEDVDYL 450 (558)
Q Consensus 406 ~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~ 450 (558)
...+.++|+..|+++++..++.+. ++-.|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888887776655443 445566777777887777665
No 366
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=69.72 E-value=93 Score=28.69 Aligned_cols=159 Identities=12% Similarity=0.077 Sum_probs=70.3
Q ss_pred hCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHH----HHHHHCCCCCCHHHHHHHHHHHhccCChH-HHH
Q 036003 171 ECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLF----RELQERNLKPTDVTMLSALSSCALLGSLD-LGK 245 (558)
Q Consensus 171 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~ 245 (558)
+.+++++|.+++.. -...+.+.|+...|-++- +-..+.++++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34566666666543 233445555554443332 33334455556555555555444333211 122
Q ss_pred HHHHHHHH---hCC--CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHC
Q 036003 246 WIHEYIKK---YGL--DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320 (558)
Q Consensus 246 ~~~~~~~~---~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 320 (558)
.+.+.+.+ .+- .-+......+...|.+.|++.+|+..|-.-..++...+..++......|...++
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------
Confidence 22222222 221 224566677888888888888888776544333333222222222222222211
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhh
Q 036003 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355 (558)
Q Consensus 321 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 355 (558)
+...-..++ -|...++...|...+....++
T Consensus 141 ----dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 ----DLFIARAVL-QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ----HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 222222233 345567777777777666653
No 367
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.15 E-value=4.1 Score=38.16 Aligned_cols=87 Identities=15% Similarity=0.151 Sum_probs=46.9
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHH
Q 036003 375 AGRLDEAYRFIDEL-PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452 (558)
Q Consensus 375 ~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 452 (558)
.|.+++|++.|... +..|. ...|..-.+++.+.++...|++=+..+++++|++..-|-.-..+..-.|+|++|...|.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 34455555555544 22332 23333334445555666666666666666666655555555555555666666666666
Q ss_pred HHHhCCCcc
Q 036003 453 LMKDRGVLK 461 (558)
Q Consensus 453 ~m~~~g~~~ 461 (558)
...+.++.+
T Consensus 207 ~a~kld~dE 215 (377)
T KOG1308|consen 207 LACKLDYDE 215 (377)
T ss_pred HHHhccccH
Confidence 665555543
No 368
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=69.11 E-value=91 Score=30.69 Aligned_cols=54 Identities=11% Similarity=0.088 Sum_probs=36.8
Q ss_pred HHHHCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--ccCChHHHHHHHHHchh
Q 036003 300 AYATHGQGHKSILMFEEMMKAQVSPDEI--TFLGLLYACS--HTGLVDEGWNYFYSMRD 354 (558)
Q Consensus 300 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~g~~~~a~~~~~~~~~ 354 (558)
.+.+.+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445778888888888888876 555544 3444445554 34567888888887765
No 369
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=68.74 E-value=44 Score=25.87 Aligned_cols=27 Identities=11% Similarity=0.385 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHH
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMK 319 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 319 (558)
-|..++..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777778888888888888887766
No 370
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=68.68 E-value=29 Score=27.76 Aligned_cols=42 Identities=10% Similarity=0.213 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcc--CCCCcccHHhHHHHHHhcCChHHHHHHHHH
Q 036003 412 LAKQVIERIFEL--DDSHGGDYVILSNLCARAGRWEDVDYLRKL 453 (558)
Q Consensus 412 ~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 453 (558)
.+.++|+.|... +...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 888888888764 466677788999999999999999999875
No 371
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.14 E-value=1.9e+02 Score=31.77 Aligned_cols=189 Identities=13% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHccCCCCC-------cccHHHHHHHHhcCCCc--hHHHHHHHHhHHCCCCCCcccHH
Q 036003 56 LTKLINFCTQNPTTSSMEHAHLLFDRIPEPD-------IVLFNTMARGYSRSKTP--IRAIFLFVELLNSGLLPDDYSFP 126 (558)
Q Consensus 56 ~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~ 126 (558)
|..|+..|... |..++|.+++......+ ...+..+++.+.+.+.. +-.++.-.+..+....-....|.
T Consensus 507 y~~Li~LY~~k---g~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift 583 (877)
T KOG2063|consen 507 YRELIELYATK---GMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFT 583 (877)
T ss_pred HHHHHHHHHhc---cchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeee
Q ss_pred H------------HHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC-----------------hHH
Q 036003 127 S------------LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD-----------------VEA 177 (558)
Q Consensus 127 ~------------ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~-----------------~~~ 177 (558)
. .+-.+... ...+-+..+++.+....-.++....+.++..|.+.=+ .+.
T Consensus 584 ~~~~~~~~sis~~~Vl~~l~~--~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rek 661 (877)
T KOG2063|consen 584 SEDKQEAESISRDDVLNYLKS--KEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREK 661 (877)
T ss_pred ccChhhhccCCHHHHHHHhhh--hCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHH
Q ss_pred HHHHHhccCC----------CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 036003 178 ARRIFENISE----------PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247 (558)
Q Consensus 178 A~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 247 (558)
....++.-.. +....|....-.+.+.|+.++|+.++-... ++++.|..+
T Consensus 662 l~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L---------------------~d~~~A~~Y 720 (877)
T KOG2063|consen 662 LLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHEL---------------------DDIDAAESY 720 (877)
T ss_pred HHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHh---------------------cchhHHHHH
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHH
Q 036003 248 HEYIKKYGLDKYVKVNTALIDMHA 271 (558)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~l~~~~~ 271 (558)
....-+ ...++...|-.++..|.
T Consensus 721 c~~~y~-~~~~~~~~y~~lL~~~l 743 (877)
T KOG2063|consen 721 CLPQYE-SDKTNKEIYLTLLRIYL 743 (877)
T ss_pred HHHhcc-CCCcccHHHHHHHHHHh
No 372
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.89 E-value=14 Score=23.08 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=13.1
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHC
Q 036003 297 MIVAYATHGQGHKSILMFEEMMKA 320 (558)
Q Consensus 297 li~~~~~~~~~~~a~~~~~~m~~~ 320 (558)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555555555555555555543
No 373
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.81 E-value=1.8e+02 Score=31.16 Aligned_cols=146 Identities=11% Similarity=0.064 Sum_probs=82.0
Q ss_pred ccHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNS---NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFR 214 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 214 (558)
+.+++|+...+... |..| -..+....|+.+.-.|++++|-...-.|...+..-|.-.+.-+...++......++
T Consensus 370 k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~l- 446 (846)
T KOG2066|consen 370 KKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYL- 446 (846)
T ss_pred hHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccC-
Confidence 66777766655433 3333 34566677777777888888887777777767777766666666666554433222
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH--------------HHH----HHHhCCCCchhHHHHHHHHHHhcCCH
Q 036003 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWI--------------HEY----IKKYGLDKYVKVNTALIDMHAKCGRL 276 (558)
Q Consensus 215 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~--------------~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~ 276 (558)
....-..+...|..++..|.. .+...-.++ .+. ..+. ..+......|+..|...+++
T Consensus 447 --Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~LYl~d~~Y 521 (846)
T KOG2066|consen 447 --PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHLYLYDNKY 521 (846)
T ss_pred --CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHHHHHccCh
Confidence 111111233445555554443 111111111 010 1110 11223334588999999999
Q ss_pred HHHHHHHhccCCCCH
Q 036003 277 DDAVSVFDNMSGKDT 291 (558)
Q Consensus 277 ~~A~~~~~~~~~~~~ 291 (558)
..|..++-...+.++
T Consensus 522 ~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 522 EKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHHhccChHH
Confidence 999999988877643
No 374
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=67.00 E-value=56 Score=25.11 Aligned_cols=87 Identities=11% Similarity=0.052 Sum_probs=54.8
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 217 (558)
...++|..+.+.+...+- ....+--+-+..+...|++++|...=.....||...|-+|. -.+.|-.+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHH
Confidence 677888888888887763 33444445556678889999995544444558888886664 457788888888888776
Q ss_pred HCCCCCCHHHH
Q 036003 218 ERNLKPTDVTM 228 (558)
Q Consensus 218 ~~~~~p~~~~~ 228 (558)
..| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 655 3433333
No 375
>PRK13342 recombination factor protein RarA; Reviewed
Probab=66.77 E-value=1.4e+02 Score=29.75 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=29.0
Q ss_pred HHHHHHHHHH---CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036003 193 YNAIITAYAR---SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG 239 (558)
Q Consensus 193 ~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 239 (558)
+..++.++.+ .++++.|+..+..|.+.|..|....-..+..++...|
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 4445555544 4678888888888888887666554444444443333
No 376
>PHA02875 ankyrin repeat protein; Provisional
Probab=66.63 E-value=97 Score=30.86 Aligned_cols=69 Identities=12% Similarity=0.086 Sum_probs=32.5
Q ss_pred HHHHHHHHhCCCCChhH--HHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcc--cHHHHHHHHhcCCCchHHHHHH
Q 036003 39 QIHAVTIKTHLQNDLNV--LTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIV--LFNTMARGYSRSKTPIRAIFLF 110 (558)
Q Consensus 39 ~~~~~~~~~g~~~~~~~--~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~ 110 (558)
.+...+.+.|..++... ..+.+...+.. |+.+-+.-+++.-..++.. .....+...++.|+.+.+..++
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~---~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKF---RDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHc---CCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH
Confidence 33455556666655422 23334444555 6776666665544333221 1112334445566665544443
No 377
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.47 E-value=1.5e+02 Score=29.67 Aligned_cols=152 Identities=14% Similarity=0.049 Sum_probs=76.7
Q ss_pred CCCchHHHHHHHHhHHC-CCCCCc-----ccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCC-C--hHHHHHHHHHHHH
Q 036003 100 SKTPIRAIFLFVELLNS-GLLPDD-----YSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN-S--NLYVCTTLINLYA 170 (558)
Q Consensus 100 ~g~~~~A~~~~~~m~~~-g~~p~~-----~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~-~--~~~~~~~ll~~~~ 170 (558)
..+++.|..-++..... ..-|+. .++..|-..+.... ..+..+..++++.++..-. | +....--|++...
T Consensus 60 T~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~-~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~ 138 (629)
T KOG2300|consen 60 TKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLA-QSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHI 138 (629)
T ss_pred hccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHh
Confidence 45678888888877543 222333 23444555555552 3677788888877765311 1 1222234555666
Q ss_pred hCCChHHHHHHHhccCC-CCc--chHHHHHHH------HHHCCCccH---HHHHHHHHHHCCCCCCHHH-------H-HH
Q 036003 171 ECSDVEAARRIFENISE-PCV--VSYNAIITA------YARSSRPNE---ALSLFRELQERNLKPTDVT-------M-LS 230 (558)
Q Consensus 171 ~~g~~~~A~~~~~~~~~-~~~--~~~~~li~~------~~~~g~~~~---A~~~~~~m~~~~~~p~~~~-------~-~~ 230 (558)
-..|+..|.+++.---+ .|. ..|..++.. ..-..+..+ +.....+|.+. ..+|... | ..
T Consensus 139 idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~l 217 (629)
T KOG2300|consen 139 IDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVL 217 (629)
T ss_pred hhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHH
Confidence 67888888887643322 222 223222211 122223333 33444445443 4555432 1 11
Q ss_pred HHHHHhccCChHHHHHHHHHHHH
Q 036003 231 ALSSCALLGSLDLGKWIHEYIKK 253 (558)
Q Consensus 231 ll~~~~~~~~~~~a~~~~~~~~~ 253 (558)
-+.-|.-.|+...+...++++.+
T Consensus 218 ql~yy~~~gq~rt~k~~lkQLQ~ 240 (629)
T KOG2300|consen 218 QLSYYLLPGQVRTVKPALKQLQD 240 (629)
T ss_pred HHHHHhcccchhhhHHHHHHHHH
Confidence 12334556777767666666553
No 378
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=65.33 E-value=71 Score=29.42 Aligned_cols=87 Identities=11% Similarity=-0.001 Sum_probs=38.1
Q ss_pred HHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH-----
Q 036003 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA----- 271 (558)
Q Consensus 197 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 271 (558)
|.+++..++|.+++...-+--+.--+.........|-.|.+.+....+.++-..-...--.-+..-|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 455555666666554443322211111222333334445555555555554444443221222223444444433
Q ss_pred hcCCHHHHHHHH
Q 036003 272 KCGRLDDAVSVF 283 (558)
Q Consensus 272 ~~g~~~~A~~~~ 283 (558)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 346666666654
No 379
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=65.18 E-value=13 Score=27.62 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=20.8
Q ss_pred HHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 417 IERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
+++.++.+|.+...-..+...+...|++++|.+.+-.+.+
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444445555555555555555555555555555555544
No 380
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=65.11 E-value=15 Score=31.26 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCC-----------hHHHHHHHHHHHh
Q 036003 410 LGLAKQVIERIFELDDSHGGDYVILSNLCARAGR-----------WEDVDYLRKLMKD 456 (558)
Q Consensus 410 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~ 456 (558)
+++|+.-|++++.++|+...++..++.+|...+. +++|...|++..+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh
Confidence 5667777788888999999999999999876653 4445555555544
No 381
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=65.02 E-value=92 Score=26.90 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=33.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCC--------------CchhHHHHHHHHHHhcCCHHHHHHHHh
Q 036003 229 LSALSSCALLGSLDLGKWIHEYIKKYGLD--------------KYVKVNTALIDMHAKCGRLDDAVSVFD 284 (558)
Q Consensus 229 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 284 (558)
.+++..|.+..++.++.++++.+.+..+. +--...|.-...+.+.|.+|.|..+++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 35666777888888888888877654321 222334444555555555555555555
No 382
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=64.33 E-value=1.6e+02 Score=29.44 Aligned_cols=110 Identities=11% Similarity=0.035 Sum_probs=78.9
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHhH
Q 036003 38 KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVELL 114 (558)
Q Consensus 38 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 114 (558)
+++++.+.+..-.|+....-+.| .... |+++.+...+..... ....+...+++..-+.|++++|+.+-+-|.
T Consensus 310 ~~~~~~lr~~~~~p~~i~l~~~i--~~~l---g~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l 384 (831)
T PRK15180 310 QQLFAALRNQQQDPVLIQLRSVI--FSHL---GYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMML 384 (831)
T ss_pred HHHHHHHHhCCCCchhhHHHHHH--HHHh---hhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 88888888776667766555544 4666 999999888866543 455677888999999999999999999888
Q ss_pred HCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC
Q 036003 115 NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155 (558)
Q Consensus 115 ~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~ 155 (558)
...++ +...........-.. |-++++...++++.....
T Consensus 385 ~~eie-~~ei~~iaa~sa~~l--~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 385 SNEIE-DEEVLTVAAGSADAL--QLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred ccccC-ChhheeeecccHHHH--hHHHHHHHHHHHHhccCC
Confidence 77665 333333333333334 778889888888877653
No 383
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.46 E-value=1.1e+02 Score=27.40 Aligned_cols=91 Identities=10% Similarity=0.169 Sum_probs=48.2
Q ss_pred CChHHHHHHHHHchhhcCC-CCChhHHHHH---HHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHH---HH-HHHH--h
Q 036003 340 GLVDEGWNYFYSMRDKYGI-VPGIKHYGCM---VDLLGRAGRLDEAYRFIDEL---PIKSTPILWRT---LL-SSCS--S 406 (558)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~---l~-~~~~--~ 406 (558)
.++++|+..|+..-+-+.. ..+...-.++ ...-+..+++.+|+++|+++ ....+..-|.. ++ .+++ -
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 4556666666555442211 1111111222 33345678889999999887 22233322321 11 1222 2
Q ss_pred cCCHHHHHHHHHHHHccCCCCccc
Q 036003 407 HNNLGLAKQVIERIFELDDSHGGD 430 (558)
Q Consensus 407 ~g~~~~a~~~~~~~~~~~~~~~~~ 430 (558)
..+.-.+.+.+++..+++|.=..+
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccccc
Confidence 356777888888888888864443
No 384
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=63.39 E-value=90 Score=28.80 Aligned_cols=85 Identities=13% Similarity=0.147 Sum_probs=42.2
Q ss_pred HHHHHHCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHh--
Q 036003 298 IVAYATHGQGHKSILMFEEMMKA--QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG-- 373 (558)
Q Consensus 298 i~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-- 373 (558)
|++++..+++.+++...-+--+. .++|...-.. |-.|.+.+.+..+.++-..-... .-.-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 45566666666655543332221 1333333322 23356666666666655555443 22222334555555544
Q ss_pred ---hcCCHHHHHHHH
Q 036003 374 ---RAGRLDEAYRFI 385 (558)
Q Consensus 374 ---~~g~~~~A~~~~ 385 (558)
-.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 347777777666
No 385
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=63.01 E-value=1.4e+02 Score=28.27 Aligned_cols=96 Identities=15% Similarity=0.119 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHchhh---cCCCCChhHHHHHHHH-Hh----hcCCHHHHHHHHHhCC---CCCCHH
Q 036003 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDK---YGIVPGIKHYGCMVDL-LG----RAGRLDEAYRFIDELP---IKSTPI 395 (558)
Q Consensus 327 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~li~~-~~----~~g~~~~A~~~~~~~~---~~~~~~ 395 (558)
.........|++.|+.+.|.+.+.+..++ .|.+.|+..+..=+.. |. -...+++|..++++-+ -+....
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 45556667788888888888877765543 1445555444332222 21 2345667777777762 122334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 036003 396 LWRTLLSSCSSHNNLGLAKQVIERIFELD 424 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 424 (558)
+|..+- |....++.+|..+|-+.+.--
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcccc
Confidence 554442 344567888888877776544
No 386
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=62.58 E-value=93 Score=29.32 Aligned_cols=52 Identities=13% Similarity=0.062 Sum_probs=25.1
Q ss_pred HHHHHCCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHc
Q 036003 299 VAYATHGQGHKSILMFEEMMKAQVSPDE---ITFLGLLYACSHTGLVDEGWNYFYSM 352 (558)
Q Consensus 299 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~ 352 (558)
-+-.+.|+..+|.+.|+++.+. .|-. .....|+.+|.....+.+...++.+.
T Consensus 283 MCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 283 MCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334556666666666665543 1211 12234555555555444444444433
No 387
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=62.49 E-value=57 Score=23.96 Aligned_cols=67 Identities=10% Similarity=0.065 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHH
Q 036003 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEAL 210 (558)
Q Consensus 142 ~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 210 (558)
.+.++++.+++.|+- +......+-.+-...|+.+.|.++++.++ .....|..++.++...|+-+-|.
T Consensus 20 ~~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 355667777777643 22222222222235578888888888888 77778888888888777765553
No 388
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=62.39 E-value=58 Score=25.86 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHH
Q 036003 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369 (558)
Q Consensus 309 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 369 (558)
+..+-++.+..-.+.|+.......+++|-+.+++..|.++|+-++.+. .+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~--g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC--GAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--ccHHHHHHHHH
Confidence 455666667777788999999999999999999999999999888743 34444565555
No 389
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=61.09 E-value=1.8e+02 Score=28.88 Aligned_cols=93 Identities=11% Similarity=0.085 Sum_probs=66.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcC
Q 036003 365 YGCMVDLLGRAGRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442 (558)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 442 (558)
...|+.-|.-.|++.+|.+.++++ |.-.....+.+++.+.-+.|+-..-..+++.....+- .|-+.+-.+|.|..
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl---IT~nQMtkGf~RV~ 588 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL---ITTNQMTKGFERVY 588 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc---eeHHHhhhhhhhhh
Confidence 456788888999999999999987 4445678888999999888888877777777765542 34555555665543
Q ss_pred --------ChHHHHHHHHHHHhCCCc
Q 036003 443 --------RWEDVDYLRKLMKDRGVL 460 (558)
Q Consensus 443 --------~~~~A~~~~~~m~~~g~~ 460 (558)
+...|.+.|+...+.+..
T Consensus 589 dsl~DlsLDvPna~ekf~~~Ve~~~~ 614 (645)
T KOG0403|consen 589 DSLPDLSLDVPNAYEKFERYVEECFQ 614 (645)
T ss_pred ccCcccccCCCcHHHHHHHHHHHHHH
Confidence 345577777766655443
No 390
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=59.35 E-value=99 Score=25.41 Aligned_cols=80 Identities=16% Similarity=0.156 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhccCC---------CCcchHHHHHHHHHHCCC-ccHHHHHHHHHHHCCCCCCHHHHHH
Q 036003 161 VCTTLINLYAECSDVEAARRIFENISE---------PCVVSYNAIITAYARSSR-PNEALSLFRELQERNLKPTDVTMLS 230 (558)
Q Consensus 161 ~~~~ll~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~ 230 (558)
..|.++.-....+.......+++.+.. .+-.+|++++.+..+..- ---+..+|.-|++.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 456677766777777777777766642 456678888888866554 3346677888887778888888888
Q ss_pred HHHHHhccCC
Q 036003 231 ALSSCALLGS 240 (558)
Q Consensus 231 ll~~~~~~~~ 240 (558)
++.++.+...
T Consensus 121 li~~~l~g~~ 130 (145)
T PF13762_consen 121 LIKAALRGYF 130 (145)
T ss_pred HHHHHHcCCC
Confidence 8888766533
No 391
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=59.17 E-value=66 Score=23.64 Aligned_cols=38 Identities=11% Similarity=0.145 Sum_probs=23.2
Q ss_pred hcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHH
Q 036003 272 KCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310 (558)
Q Consensus 272 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 310 (558)
..|+.+.|.++++.+. +.+..|..++.++...|..+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3466666666666666 6666666666666666554443
No 392
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=59.15 E-value=13 Score=20.60 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHccCCCCcccHHhHHH
Q 036003 408 NNLGLAKQVIERIFELDDSHGGDYVILSN 436 (558)
Q Consensus 408 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 436 (558)
|+.+.+..+|++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677788888888777766666655543
No 393
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=59.08 E-value=58 Score=28.96 Aligned_cols=64 Identities=13% Similarity=0.083 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCH-------HHHHHHHHHHHccC--CCC----cccHHhHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036003 396 LWRTLLSSCSSHNNL-------GLAKQVIERIFELD--DSH----GGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~-------~~a~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (558)
.+.-+...|...|+. ..|.+.|+++.+.. |.. ......++..+.+.|++++|.+.|.++...+-
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 344445556666663 44555555555443 221 23455677788899999999999998876543
No 394
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.04 E-value=3.1e+02 Score=31.03 Aligned_cols=121 Identities=12% Similarity=0.035 Sum_probs=68.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHH
Q 036003 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG----IKHYGCMVDLLGRAGRLDEAYRFIDELPI-KSTPILWRTLLS 402 (558)
Q Consensus 328 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~ 402 (558)
-|..+++.+.+.+-.+.+.++-..+.+ .++++ ..+++++.+-....|.+-+|.+.+-+-+. .....+.+.++.
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe--~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvi 1062 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIE--NLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVI 1062 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 356667777777777777776666655 33332 34566777777788888888777666421 111245566666
Q ss_pred HHHhcCCH------------HHHHH-HHHHHHccCCCCcc-cHHhHHHHHHhcCChHHHHHH
Q 036003 403 SCSSHNNL------------GLAKQ-VIERIFELDDSHGG-DYVILSNLCARAGRWEDVDYL 450 (558)
Q Consensus 403 ~~~~~g~~------------~~a~~-~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~ 450 (558)
.++..|.. ++... +++..-+..|.... .|..|-..+.+.++|.+|-.+
T Consensus 1063 vLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1063 VLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 66666653 34444 33333333333323 344444445667777776544
No 395
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.87 E-value=1.5e+02 Score=27.21 Aligned_cols=196 Identities=13% Similarity=0.108 Sum_probs=112.9
Q ss_pred CCcchHHHHHHH-HHHCCCccHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHH---hCC--CC
Q 036003 188 PCVVSYNAIITA-YARSSRPNEALSLFRELQERNLKPT---DVTMLSALSSCALLGSLDLGKWIHEYIKK---YGL--DK 258 (558)
Q Consensus 188 ~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~--~~ 258 (558)
||+..-|..-.+ -.+...+++|+.-|++..+..-.-- -.....++....+.+++++....+.++.. ..+ .-
T Consensus 24 pdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNy 103 (440)
T KOG1464|consen 24 PDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNY 103 (440)
T ss_pred CCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccc
Confidence 666544333221 1234578899999988876421112 22445567888888999988888887753 222 22
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccC-----CCCHHhH----HHHHHHHHHCCChHHHHHHHHHHHHCCCCC----C
Q 036003 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMS-----GKDTQAW----SAMIVAYATHGQGHKSILMFEEMMKAQVSP----D 325 (558)
Q Consensus 259 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~~g~~p----~ 325 (558)
+....|.+++......+.+--.++|+.-. .+|...| .-+...|...+.+.+..++++++......- |
T Consensus 104 SEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD 183 (440)
T KOG1464|consen 104 SEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDD 183 (440)
T ss_pred cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchh
Confidence 34556777776666666665555554332 1233322 456677777788888888888877642211 1
Q ss_pred -------HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHH----HHHhhcCCHHHHHH
Q 036003 326 -------EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV----DLLGRAGRLDEAYR 383 (558)
Q Consensus 326 -------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~ 383 (558)
...|..=|..|....+-..-..+++....-....|.+.....+- .+..+.|++++|..
T Consensus 184 ~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 184 QKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 13466666777777776666777766554323344443332221 22345677777643
No 396
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=58.51 E-value=65 Score=25.59 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=35.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 036003 209 ALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254 (558)
Q Consensus 209 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 254 (558)
..+-++.+..-++.|++......+++|.+.+|+..|.++|+-++..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4445555666677888888888888888888888888888877654
No 397
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.31 E-value=51 Score=25.52 Aligned_cols=27 Identities=22% Similarity=0.514 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHCCCccHHHHHHHHHHH
Q 036003 192 SYNAIITAYARSSRPNEALSLFRELQE 218 (558)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (558)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888888888888888888888766
No 398
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=58.23 E-value=36 Score=25.44 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=34.5
Q ss_pred HhcCCHHHHHHHHHHHHccCCCC---------cccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 405 SSHNNLGLAKQVIERIFELDDSH---------GGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
.+.|++..|.+.+.+..+..... ..+...++..+...|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46778888877776665533111 12334566677888999999998887764
No 399
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=57.88 E-value=1.6e+02 Score=27.41 Aligned_cols=59 Identities=20% Similarity=0.188 Sum_probs=42.6
Q ss_pred HHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 036003 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252 (558)
Q Consensus 193 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 252 (558)
++.....|..+|.+.+|.++-+....-+ +.+...+-.++..+...|+--.+.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444567888888888888888877653 4466677778888888888777766666553
No 400
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=57.52 E-value=47 Score=26.82 Aligned_cols=70 Identities=9% Similarity=0.029 Sum_probs=47.4
Q ss_pred CCChhHHHHHHHHHhhcCCHH---HHHHHHHhC-C-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 359 VPGIKHYGCMVDLLGRAGRLD---EAYRFIDEL-P-IKST--PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 359 ~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
.++..+--.+..++.+..+.+ +.+.+++++ + ..|+ .....-|.-++.+.++++.+.++.+.+++.+|+|.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 455555566667777665544 446666665 2 2332 23444566788899999999999999999888763
No 401
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=57.26 E-value=74 Score=23.29 Aligned_cols=62 Identities=10% Similarity=0.056 Sum_probs=47.2
Q ss_pred CHHHHHHHHHhccCCc-hHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC
Q 036003 20 NTPNALSLLPRCTSFR-GLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84 (558)
Q Consensus 20 ~~~~~~~ll~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~ 84 (558)
....|...++.-.... +-.++++.....|+..|+.+|..++....-. -..+...++++.|-.
T Consensus 9 ~~~~~k~~~~rk~~Ls~eE~EL~ELa~~AGv~~dp~VFriildLL~~n---VsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 9 TAQVYKYSLRRKKVLSAEEVELYELAQLAGVPMDPEVFRIILDLLRLN---VSPDAIFQMLKSMCS 71 (88)
T ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHhCCCcChHHHHHHHHHHHcC---CCHHHHHHHHHHHHc
Confidence 3555666555433333 4479999999999999999999999998888 788888888887743
No 402
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=56.85 E-value=2.2e+02 Score=28.67 Aligned_cols=109 Identities=23% Similarity=0.209 Sum_probs=57.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHH---HhCCCccCCcccEEEE-CCEEEEE
Q 036003 402 SSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM---KDRGVLKVPGCSSIEV-NNVVREF 477 (558)
Q Consensus 402 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m---~~~g~~~~~~~~~~~~-~~~~~~~ 477 (558)
.++.+..+...+.+-.+.+.....+++.....-...+.-.|++.+|.+++... ...|...+|.++...+ |++---+
T Consensus 214 r~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh 293 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIH 293 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEe
Confidence 44455555666665555555544455555555567788889999999987654 2345555555544444 4432211
Q ss_pred eeCCCCCCChHHH-HHHHHHHHHHHHHcCcccCCCC
Q 036003 478 FSGDGVHSYSTDL-QKALDELVKELKMVGYVPDTSL 512 (558)
Q Consensus 478 ~~~~~~~~~~~~~-~~~~~~l~~~m~~~g~~pd~~~ 512 (558)
+ ..+.|...... .++++.....+ ..|++|.+..
T Consensus 294 ~-~~~~y~~~~~~F~kAL~N~c~qL-~~g~~~~~~~ 327 (696)
T KOG2471|consen 294 Y-QLGCYQASSVLFLKALRNSCSQL-RNGLKPAKTF 327 (696)
T ss_pred e-ehhhHHHHHHHHHHHHHHHHHHH-hccCCCCcce
Confidence 1 22223222222 33333333343 3488887543
No 403
>PRK12798 chemotaxis protein; Reviewed
Probab=56.68 E-value=2.1e+02 Score=28.27 Aligned_cols=184 Identities=13% Similarity=0.128 Sum_probs=109.0
Q ss_pred cCCHHHHHHHHhccCCC----CHHhHHHHHHH-HHHCCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChH
Q 036003 273 CGRLDDAVSVFDNMSGK----DTQAWSAMIVA-YATHGQGHKSILMFEEMMKAQVSPD----EITFLGLLYACSHTGLVD 343 (558)
Q Consensus 273 ~g~~~~A~~~~~~~~~~----~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~ 343 (558)
.|+.++|.+.+..+... ....|-.|+.+ .....++.+|+++|++..- .-|- ......-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 36667777777666533 33345555544 3345677888888887654 2333 234444555667888888
Q ss_pred HHHHHHHHchhhcCCCCChhHHHH----HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036003 344 EGWNYFYSMRDKYGIVPGIKHYGC----MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIER 419 (558)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 419 (558)
++..+-.....+|...|-..-|.. .+..+...-..+.-..++..|.-.--...|..+...-...|+.+.|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 877766666665555554433332 2222333334455566666664223356888888888899999999999999
Q ss_pred HHccCCCCcccHHhHHHHHHh-----cCChHHHHHHHHHHHhCCC
Q 036003 420 IFELDDSHGGDYVILSNLCAR-----AGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 420 ~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~g~ 459 (558)
+..+... ...-...+..|.. ..+++++.+.+..+....+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L 326 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRDKL 326 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhC
Confidence 9887632 2333333333432 2446667766665544333
No 404
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=56.26 E-value=3e+02 Score=30.04 Aligned_cols=219 Identities=12% Similarity=0.044 Sum_probs=105.1
Q ss_pred HHhCCChHHHHHHHhccCC----CCcc-------hHHHHHH-HHHHCCCccHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 036003 169 YAECSDVEAARRIFENISE----PCVV-------SYNAIIT-AYARSSRPNEALSLFRELQER----NLKPTDVTMLSAL 232 (558)
Q Consensus 169 ~~~~g~~~~A~~~~~~~~~----~~~~-------~~~~li~-~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~ll 232 (558)
.....++++|..+..+... ++.. .|+.+-. .....|++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3445677777777765542 2221 3444332 234457778887777765543 1122334455556
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH-----HHHHHhcCCH--HHHHHHHhccCC-----C-----CHHhHH
Q 036003 233 SSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL-----IDMHAKCGRL--DDAVSVFDNMSG-----K-----DTQAWS 295 (558)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~g~~--~~A~~~~~~~~~-----~-----~~~~~~ 295 (558)
.+..-.|++++|..+.....+..-..+...+... ...+...|.. .+....|..... . -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 6666778888887777766554323333333222 2234445522 222233332221 1 122334
Q ss_pred HHHHHHHHC-CChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHccCChHHHHHHHHHchhhcCCCC----ChhHHHHH
Q 036003 296 AMIVAYATH-GQGHKSILMFEEMMKAQVSPDEITF--LGLLYACSHTGLVDEGWNYFYSMRDKYGIVP----GIKHYGCM 368 (558)
Q Consensus 296 ~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l 368 (558)
.+..++.+. +...++..-++-.......|-...+ ..|+......|++++|...+.++..- ...+ +...-..+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHHHH
Confidence 444444441 1122222222222222222222222 25666777788888888877777653 2222 21111222
Q ss_pred H--HHHhhcCCHHHHHHHHHhC
Q 036003 369 V--DLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 369 i--~~~~~~g~~~~A~~~~~~~ 388 (558)
+ ......|+.+.|.....+-
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHhc
Confidence 2 2344677777777766653
No 405
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=56.17 E-value=1.4e+02 Score=26.99 Aligned_cols=82 Identities=10% Similarity=0.003 Sum_probs=47.8
Q ss_pred HHhcCCHHHHHHHHhccC--CCCH-HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHH
Q 036003 270 HAKCGRLDDAVSVFDNMS--GKDT-QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI-TFLGLLYACSHTGLVDEG 345 (558)
Q Consensus 270 ~~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a 345 (558)
|....+++.|+..|.+.. .|++ .-|..-+.++.+..+++.+..--++.++ +.||.+ ....+-.+......++.|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 444556677776666544 3333 3355566666677777776666665555 455553 233344455566667777
Q ss_pred HHHHHHch
Q 036003 346 WNYFYSMR 353 (558)
Q Consensus 346 ~~~~~~~~ 353 (558)
...+.+..
T Consensus 98 I~~Lqra~ 105 (284)
T KOG4642|consen 98 IKVLQRAY 105 (284)
T ss_pred HHHHHHHH
Confidence 77766653
No 406
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=55.95 E-value=1.7e+02 Score=27.01 Aligned_cols=158 Identities=17% Similarity=0.079 Sum_probs=75.6
Q ss_pred CCHHHHHHHHccCCCCCcccHHHHHHHHhcCCCchHHHHH----HHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHH
Q 036003 70 SSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFL----FVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145 (558)
Q Consensus 70 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~ 145 (558)
+++++|..++..- ...+.+.|+...|.++ .+.+.+.+.++|......++..+...+ ....+-.+
T Consensus 4 kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~-~~~p~r~~ 71 (260)
T PF04190_consen 4 KKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFP-PEEPERKK 71 (260)
T ss_dssp T-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS--TT-TTHHH
T ss_pred ccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-CCcchHHH
Confidence 5677777766432 3345556665554444 333344466666665566665555442 11112333
Q ss_pred HHHHHHH---hCC--CChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCC
Q 036003 146 LHCFAIK---LGL--NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERN 220 (558)
Q Consensus 146 ~~~~~~~---~g~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 220 (558)
+.+.+++ .|- .-++.....+...|.+.|++.+|+..|=.-..++...+..++..+...|...++--
T Consensus 72 fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dl--------- 142 (260)
T PF04190_consen 72 FIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADL--------- 142 (260)
T ss_dssp HHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHH---------
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhH---------
Confidence 3333333 221 23677788888888899998888887755443433333334433333343333311
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 036003 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254 (558)
Q Consensus 221 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 254 (558)
. ....+--|...++...|...+....+.
T Consensus 143 -----f-i~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 143 -----F-IARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -----H-HHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred -----H-HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1 112222344567777777766655543
No 407
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=54.88 E-value=86 Score=25.05 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHccC--CCCcccHHhHHHHHHhcCChHHHHHHHH
Q 036003 411 GLAKQVIERIFELD--DSHGGDYVILSNLCARAGRWEDVDYLRK 452 (558)
Q Consensus 411 ~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 452 (558)
++...+|..|...+ ...+..|...+..+...|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33566777776654 5556678888889999999999999886
No 408
>PRK13342 recombination factor protein RarA; Reviewed
Probab=54.18 E-value=2.4e+02 Score=28.19 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=27.2
Q ss_pred HHHHHHHHHH---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036003 294 WSAMIVAYAT---HGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336 (558)
Q Consensus 294 ~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 336 (558)
+..++.++.+ .++.+.|+.++..|.+.|..|....-..++.++
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3344444444 477888888888888888777655444444443
No 409
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.03 E-value=56 Score=28.45 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 036003 389 PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425 (558)
Q Consensus 389 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 425 (558)
...|++.+|..++.++...|+.++|.+..+++...-|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4467888888888888888888888888888877777
No 410
>PRK14700 recombination factor protein RarA; Provisional
Probab=52.84 E-value=2e+02 Score=26.99 Aligned_cols=125 Identities=10% Similarity=0.087 Sum_probs=71.3
Q ss_pred CCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhcc-C--CCCcchHH
Q 036003 118 LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENI-S--EPCVVSYN 194 (558)
Q Consensus 118 ~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~-~--~~~~~~~~ 194 (558)
+..+......++..+. ||...|+..++.+.......+. . . =..+...++..+- . ..+...+.
T Consensus 63 ~~i~~~al~~ia~~a~----GDaR~aLN~LE~a~~~~~~~~~-~---~-------it~~~~~~~~~~~~~~yDk~gd~HY 127 (300)
T PRK14700 63 FKIDDGLYNAMHNYNE----GDCRKILNLLERMFLISTRGDE-I---Y-------LNKELFDQAVGETSRDFHREGKEFY 127 (300)
T ss_pred CCcCHHHHHHHHHhcC----CHHHHHHHHHHHHHhhccccCC-C---c-------cCHHHHHHHHhHHHhcccCCcchhH
Confidence 3445555555554442 8999999999886642101000 0 0 0122222222211 1 13334444
Q ss_pred HHHHHHHHC---CCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh-----HHHHHHHHHHHHhCCC
Q 036003 195 AIITAYARS---SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSL-----DLGKWIHEYIKKYGLD 257 (558)
Q Consensus 195 ~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~ 257 (558)
-+|+++.++ .+++.|+-.+.+|.+.|-.|....=..++.++...|.- ..|...++.....|++
T Consensus 128 d~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~P 198 (300)
T PRK14700 128 EQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMP 198 (300)
T ss_pred HHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCh
Confidence 567777654 78999999999999999877777766777777666642 3344455555555543
No 411
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=52.05 E-value=3.1e+02 Score=30.85 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHhcC--CHHHHHHHHhccCCC
Q 036003 261 KVNTALIDMHAKCG--RLDDAVSVFDNMSGK 289 (558)
Q Consensus 261 ~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~ 289 (558)
.....++.+|++.+ ++++|+.....+.+.
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 34455677777777 777777777776654
No 412
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=51.54 E-value=18 Score=25.77 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=18.2
Q ss_pred ChHHHHHHHHHHHHHHHHcCcccCCCC
Q 036003 486 YSTDLQKALDELVKELKMVGYVPDTSL 512 (558)
Q Consensus 486 ~~~~~~~~~~~l~~~m~~~g~~pd~~~ 512 (558)
...++...+++...+++..|+.||--.
T Consensus 6 ~li~il~~ie~~inELk~dG~ePDivL 32 (85)
T PF08967_consen 6 DLIRILELIEEKINELKEDGFEPDIVL 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----EEE
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 345778888999999999999999433
No 413
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.48 E-value=54 Score=28.51 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=18.7
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 357 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
...|+..+|..++..+...|+.++|.++.+++
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455666666666666666666665555555
No 414
>PHA02875 ankyrin repeat protein; Provisional
Probab=50.36 E-value=2.7e+02 Score=27.67 Aligned_cols=147 Identities=11% Similarity=0.029 Sum_probs=60.6
Q ss_pred HHHHHhCCChHHHHHHHhccCCC----CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccC
Q 036003 166 INLYAECSDVEAARRIFENISEP----CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT--MLSALSSCALLG 239 (558)
Q Consensus 166 l~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~ 239 (558)
+...++.|+.+.+..+++.-... +..-. +.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcccccccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 44455666666666666543221 11111 222233344443 33444444554443221 112233334555
Q ss_pred ChHHHHHHHHHHHHhCCCCch---hHHHHHHHHHHhcCCHHHHHHHHhccCCCCHH---hHHHHHHHHHHCCChHHHHHH
Q 036003 240 SLDLGKWIHEYIKKYGLDKYV---KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ---AWSAMIVAYATHGQGHKSILM 313 (558)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~ 313 (558)
+.+.+..++ +.|..++. .-.+ -+...+..|+.+-+.-+++.-...+.. -..+.+...+..|+.+ +
T Consensus 147 ~~~~v~~Ll----~~g~~~~~~d~~g~T-pL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----i 217 (413)
T PHA02875 147 DIKGIELLI----DHKACLDIEDCCGCT-PLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----I 217 (413)
T ss_pred CHHHHHHHH----hcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----H
Confidence 554443333 33332221 1111 233344556666555555543332211 1123333334445443 4
Q ss_pred HHHHHHCCCCCCH
Q 036003 314 FEEMMKAQVSPDE 326 (558)
Q Consensus 314 ~~~m~~~g~~p~~ 326 (558)
.+-+.+.|..++.
T Consensus 218 v~~Ll~~gad~n~ 230 (413)
T PHA02875 218 VRLFIKRGADCNI 230 (413)
T ss_pred HHHHHHCCcCcch
Confidence 4445556666654
No 415
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=50.30 E-value=84 Score=32.19 Aligned_cols=134 Identities=10% Similarity=-0.055 Sum_probs=90.5
Q ss_pred CCCHHHHHHHHHHHHcc--CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHH
Q 036003 323 SPDEITFLGLLYACSHT--GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST--PILW 397 (558)
Q Consensus 323 ~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~--~~~~ 397 (558)
-|+..+...++.-.... ...+-|-.++..|.. .+.|--...|.-.--+.-.|+...|.+.+... ...|. .+..
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 45666666665443322 233445555555543 44443222222222234568888998888776 33342 2445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCC
Q 036003 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 398 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
..|.+...+.|....|..++.+.+.+....+-++..++++|....+.+.|++.|+...+..
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 5677778888899999999999999887778899999999999999999999998876643
No 416
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=49.69 E-value=2.4e+02 Score=26.83 Aligned_cols=82 Identities=15% Similarity=0.038 Sum_probs=42.2
Q ss_pred ccHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHhCCChHHHHHHHhccCC-CCcchHHHHHHHHHHCCCccHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGL----NSNLYVCTTLINLYAECSDVEAARRIFENISE-PCVVSYNAIITAYARSSRPNEALSL 212 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~----~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~ 212 (558)
+-.+.+.+.|+.....+. ..++.....++....+.|+.+.-..+++.... .+..-...++.+++...+.+...++
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 144 ECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHH
Confidence 445666677766665311 23444555556666666665554444444443 3444455566666666666665666
Q ss_pred HHHHHHC
Q 036003 213 FRELQER 219 (558)
Q Consensus 213 ~~~m~~~ 219 (558)
++.....
T Consensus 224 l~~~l~~ 230 (324)
T PF11838_consen 224 LDLLLSN 230 (324)
T ss_dssp HHHHHCT
T ss_pred HHHHcCC
Confidence 6655553
No 417
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=49.47 E-value=27 Score=31.02 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=25.0
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 036003 374 RAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 374 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 427 (558)
+.++.+.|.+++.+. ...| ....|-.+...-.+.|+.+.|.+.+++.++++|++
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344444444444444 2122 23444444444445555555555555555555444
No 418
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=49.41 E-value=2.6e+02 Score=27.28 Aligned_cols=57 Identities=11% Similarity=0.069 Sum_probs=41.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCC-CcccHHhHHHHHH-hcCChHHHHHHHHHHHh
Q 036003 400 LLSSCSSHNNLGLAKQVIERIFELDDS-HGGDYVILSNLCA-RAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 400 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 456 (558)
.+..+.+.|-+..|.++.+-++.++|. |+..-...|+.|+ ++++++--.++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 355677888888888888888888887 7777777777764 55667767777766543
No 419
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=49.23 E-value=2.2e+02 Score=26.41 Aligned_cols=20 Identities=10% Similarity=0.227 Sum_probs=13.5
Q ss_pred HHHHHHHHCCChHHHHHHHH
Q 036003 296 AMIVAYATHGQGHKSILMFE 315 (558)
Q Consensus 296 ~li~~~~~~~~~~~a~~~~~ 315 (558)
-++..+.+.|.+.+|+.+..
T Consensus 130 Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 130 KLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHHHHHhcccHHHHHHHHH
Confidence 45667777777777776544
No 420
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=48.83 E-value=2.5e+02 Score=26.87 Aligned_cols=63 Identities=13% Similarity=0.076 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHH
Q 036003 307 GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372 (558)
Q Consensus 307 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 372 (558)
.+.-+.++++..+.+ +-+.......+..+.+..+.+...+.|+++... .+-+...|...++..
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHH
Confidence 345566667666652 123455555666666666666666667666653 223455565555543
No 421
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=48.67 E-value=2.7e+02 Score=27.20 Aligned_cols=53 Identities=8% Similarity=-0.005 Sum_probs=23.8
Q ss_pred HHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHh-hcCCHHHHHHHHHhC
Q 036003 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG-RAGRLDEAYRFIDEL 388 (558)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~ 388 (558)
.+.+.|-+..|.++.+-+..- ...-|+......|+.|+ ++++++--+++.+..
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsL-dp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSL-DPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhc-CCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 444555555555555555421 11113333333444443 445555555555443
No 422
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=48.21 E-value=25 Score=28.18 Aligned_cols=31 Identities=32% Similarity=0.494 Sum_probs=20.5
Q ss_pred CCCchHHHHHHHHhHHCCCCCCcccHHHHHHHH
Q 036003 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC 132 (558)
Q Consensus 100 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 132 (558)
.|.-..|..+|++|++.|-.||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 45556677777777777777654 56666543
No 423
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=48.17 E-value=37 Score=23.08 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=10.8
Q ss_pred HHHHHHHHCCChHHHHHHHHHHH
Q 036003 296 AMIVAYATHGQGHKSILMFEEMM 318 (558)
Q Consensus 296 ~li~~~~~~~~~~~a~~~~~~m~ 318 (558)
.+|.+|.+.|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555555555555544443
No 424
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=47.99 E-value=2.7e+02 Score=28.65 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCC--CHHh---HHHHHHHHHHCCChHHHHHHHHHHHH
Q 036003 265 ALIDMHAKCGRLDDAVSVFDNMSGK--DTQA---WSAMIVAYATHGQGHKSILMFEEMMK 319 (558)
Q Consensus 265 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~ 319 (558)
.++.-|.+.+++++|..++..|.=. .... .+.+...+.+..--++....++.+..
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 4667788888888888888887632 2222 33334444444434444444444443
No 425
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=47.77 E-value=33 Score=31.93 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=25.4
Q ss_pred HHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHH
Q 036003 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTML 229 (558)
Q Consensus 193 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 229 (558)
|+.-|....+.||+++|+.++++.++.|+.--..+|.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 5677777777777777777777777777654444443
No 426
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=47.73 E-value=72 Score=23.81 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=19.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccC
Q 036003 400 LLSSCSSHNNLGLAKQVIERIFELD 424 (558)
Q Consensus 400 l~~~~~~~g~~~~a~~~~~~~~~~~ 424 (558)
+.......|+.++|.+.+++++++-
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4455667789999999998887654
No 427
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=47.38 E-value=41 Score=31.33 Aligned_cols=40 Identities=15% Similarity=0.255 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 332 (558)
-|+..|..-.+.||+++|+.++++..+.|+.--..+|-..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 3678899999999999999999999998876555555443
No 428
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.77 E-value=26 Score=28.09 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=25.4
Q ss_pred HHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036003 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSS 234 (558)
Q Consensus 200 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 234 (558)
....|.-..|..+|.+|++.|-+||. |+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34557778899999999999999884 5555544
No 429
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=46.45 E-value=71 Score=31.49 Aligned_cols=57 Identities=7% Similarity=0.042 Sum_probs=41.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036003 365 YGCMVDLLGRAGRLDEAYRFIDELPIKS----------TPILWRTLLSSCSSHNNLGLAKQVIERIF 421 (558)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (558)
.-.|++.++-.|++..|++.++.+.... ...++.-+.-+|.-.+++.+|.+.|...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788899999999888773211 23466667778888888888888888775
No 430
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=46.36 E-value=4.8e+02 Score=29.40 Aligned_cols=255 Identities=7% Similarity=-0.084 Sum_probs=114.7
Q ss_pred HHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc
Q 036003 180 RIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259 (558)
Q Consensus 180 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 259 (558)
.+...+..+|...-..-+..+.+.+. .++...+....+. ++...=...+.++.+.+........+..+.+. ++
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CC
Confidence 44444445566555555665655554 3344444444432 23333233333333332111111222222221 34
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036003 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339 (558)
Q Consensus 260 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 339 (558)
..+-...+.++...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.++...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 44444444554433211 12234444555666555555666555544322 11122 234444444555555555
Q ss_pred CChHH-HHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036003 340 GLVDE-GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418 (558)
Q Consensus 340 g~~~~-a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 418 (558)
+..+. +...+..+.. .++...-...+.++.+.|..+.+...+..+-..++..+-...+.++...+. +++...+.
T Consensus 770 ~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 770 GAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred ccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 54332 2333444433 245666667777777777655443333333224555555555666666554 34545555
Q ss_pred HHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 419 RIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
.+++ -++...-...+.++.+.+.-..+...+....+
T Consensus 845 ~~L~--D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALT--DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhc--CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 5543 12233444455555554323445555554443
No 431
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=46.18 E-value=81 Score=25.81 Aligned_cols=63 Identities=10% Similarity=0.087 Sum_probs=43.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCC
Q 036003 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443 (558)
Q Consensus 378 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 443 (558)
.+.|.++.+-|+ .....-.........|++..|.++.+.++..+|++...-...+++|.+.|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 356677777764 223333445566788999999999999999999998887777777766653
No 432
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.64 E-value=78 Score=20.14 Aligned_cols=33 Identities=9% Similarity=0.053 Sum_probs=22.3
Q ss_pred HHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036003 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334 (558)
Q Consensus 302 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 334 (558)
.+.|-.+++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777777766666665554
No 433
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=43.90 E-value=35 Score=31.67 Aligned_cols=59 Identities=14% Similarity=0.253 Sum_probs=36.6
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccH
Q 036003 373 GRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431 (558)
Q Consensus 373 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 431 (558)
-+.|+.++|..+|+.. ...| ++....-+......+++.-+|-+++-+++...|.+..+.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 4667777777777764 3333 334444444444555677777777777777777765543
No 434
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=43.34 E-value=1.2e+02 Score=21.50 Aligned_cols=73 Identities=12% Similarity=0.136 Sum_probs=35.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHhccCCch------H---HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHH
Q 036003 6 SPPITQSPPPKLCTNTPNALSLLPRCTSFRG------L---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAH 76 (558)
Q Consensus 6 s~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~------~---~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~ 76 (558)
+.+++|.|.+...-....|..++.+..+... + +.......+..+=.++.-|+.|....-+.- .|++.+..
T Consensus 6 ~~~~sPip~~PrGls~hhWLNflQaAyRL~PgPS~~DF~qLr~flk~alkTpvwl~pi~yslla~lipkgy-pgrv~ei~ 84 (92)
T PF02228_consen 6 SRSASPIPKPPRGLSTHHWLNFLQAAYRLQPGPSSFDFHQLRNFLKLALKTPVWLNPINYSLLASLIPKGY-PGRVNEII 84 (92)
T ss_dssp SSSS--S--SS-SSTHHHHHHHHHHHHHSS---STTTHHHHHHHHHHHHT-TTSTTTT-TTTHHHHS-SS--STTHHHHH
T ss_pred CCCCCCCCCCCCCcCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHcCCeeeccccHHHHHHHccCCC-CchHHHHH
Confidence 3344444444444556678888876554422 2 444444555555556666666666555542 26666655
Q ss_pred HHH
Q 036003 77 LLF 79 (558)
Q Consensus 77 ~~~ 79 (558)
.++
T Consensus 85 ~il 87 (92)
T PF02228_consen 85 NIL 87 (92)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 435
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=43.18 E-value=2.9e+02 Score=26.03 Aligned_cols=73 Identities=8% Similarity=0.180 Sum_probs=50.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh----------cCCHHH
Q 036003 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR----------AGRLDE 380 (558)
Q Consensus 311 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~ 380 (558)
.++|+.|.+.++.|.-..|..+.-.+.+.=.+.+...+|+.+... ..-|..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 467777888888888888877777777777788888888887753 2235555554442 466666
Q ss_pred HHHHHHhCC
Q 036003 381 AYRFIDELP 389 (558)
Q Consensus 381 A~~~~~~~~ 389 (558)
-.++++.-+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 667666654
No 436
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=42.81 E-value=66 Score=25.33 Aligned_cols=59 Identities=15% Similarity=0.062 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH-------ccCCCCccc----HHhHHHHHHhcCChHHHHHHHHHH
Q 036003 396 LWRTLLSSCSSHNNLGLAKQVIERIF-------ELDDSHGGD----YVILSNLCARAGRWEDVDYLRKLM 454 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~m 454 (558)
++..|..++...|++++++...++++ +++.+.... ..+-..++...|+.++|.+.|+..
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 33444445555555554444433333 233333222 223344566778888887777643
No 437
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.09 E-value=47 Score=35.63 Aligned_cols=97 Identities=12% Similarity=0.213 Sum_probs=60.8
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 036003 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383 (558)
Q Consensus 304 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 383 (558)
+.++++.+.+.+...--| .++|..+.+.|-++-|+.+.+.=..++ .....+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHH
Confidence 456666666555433222 134555566777777766554443322 22346778888877
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 036003 384 FIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424 (558)
Q Consensus 384 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 424 (558)
.-..+. +..+|..|+....++|+.+-|+-.|++...-+
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knfe 702 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNFE 702 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 776654 66788888888888888888888887765433
No 438
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=42.00 E-value=1.2e+02 Score=31.58 Aligned_cols=47 Identities=9% Similarity=-0.020 Sum_probs=26.7
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCh
Q 036003 296 AMIVAYATHGQGHKSILMFEEMMKA--QVSPDEITFLGLLYACSHTGLV 342 (558)
Q Consensus 296 ~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~ 342 (558)
+|+.+|..+|++-.+..+++.+... |-+.=...|+..|+...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 5666666666666666666666543 2122224455556666666654
No 439
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.77 E-value=2.9e+02 Score=28.94 Aligned_cols=84 Identities=14% Similarity=0.029 Sum_probs=61.0
Q ss_pred hhcCCHHHHHHHHHh-CCCCC-C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCCh
Q 036003 373 GRAGRLDEAYRFIDE-LPIKS-T------PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444 (558)
Q Consensus 373 ~~~g~~~~A~~~~~~-~~~~~-~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 444 (558)
.+..++..+.++|.. |..-| | ....+.|.-+|....+.|.|.++++++.+.+|.++-+-..+..+....|+-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 355677777777754 32111 1 234566777788888999999999999999888877777777788888888
Q ss_pred HHHHHHHHHHHh
Q 036003 445 EDVDYLRKLMKD 456 (558)
Q Consensus 445 ~~A~~~~~~m~~ 456 (558)
++|+..+.....
T Consensus 445 e~AL~~~~~~~s 456 (872)
T KOG4814|consen 445 EEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHHh
Confidence 888888776653
No 440
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=41.60 E-value=1.4e+02 Score=22.07 Aligned_cols=53 Identities=9% Similarity=-0.026 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC--cccHHhHHHHHHhcCChH
Q 036003 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH--GGDYVILSNLCARAGRWE 445 (558)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 445 (558)
|...-..+...+...|++++|++.+-++++.++.. ...-..|+.++.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 55666777888888899999998888888877543 455667777777777744
No 441
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=41.46 E-value=2.9e+02 Score=26.06 Aligned_cols=72 Identities=7% Similarity=0.145 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHH----------CCCccHHHHH
Q 036003 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR----------SSRPNEALSL 212 (558)
Q Consensus 143 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~A~~~ 212 (558)
-.++++.+.+.++.|.-..+.-+.-.+.+.=.+.+.+.+++.+.... .-|..|+..|+. .|++...+++
T Consensus 262 D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkL 340 (370)
T KOG4567|consen 262 DEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-QRFDFLLYICCSMLILVRERILEGDFTVNMKL 340 (370)
T ss_pred hHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-hhhHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 35677777788888888888888888888888888888888876521 115555544442 5777777776
Q ss_pred HHH
Q 036003 213 FRE 215 (558)
Q Consensus 213 ~~~ 215 (558)
++.
T Consensus 341 LQ~ 343 (370)
T KOG4567|consen 341 LQN 343 (370)
T ss_pred Hhc
Confidence 654
No 442
>PRK10941 hypothetical protein; Provisional
Probab=40.63 E-value=3e+02 Score=25.51 Aligned_cols=78 Identities=6% Similarity=0.016 Sum_probs=49.1
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHH
Q 036003 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372 (558)
Q Consensus 294 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 372 (558)
.+.+-.+|.+.++++.|+.+.+.+.. +.|+. .-+.--.-.|.+.|.+..|..-++...+.+.-.|+.......+..+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 45556677777777888777777777 34443 3444455557777777777777777766544555555555544444
Q ss_pred h
Q 036003 373 G 373 (558)
Q Consensus 373 ~ 373 (558)
.
T Consensus 262 ~ 262 (269)
T PRK10941 262 E 262 (269)
T ss_pred h
Confidence 3
No 443
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.62 E-value=3.7e+02 Score=26.49 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHhccCC------CCcchHHHHHHHHHHCCCccHHHHHHHHHHH
Q 036003 160 YVCTTLINLYAECSDVEAARRIFENISE------PCVVSYNAIITAYARSSRPNEALSLFRELQE 218 (558)
Q Consensus 160 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (558)
..+.-+...|..+|+++.|.+.|.+... ..+..|-.+|..-.-.|+|.....+..+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4567788889999999999999988654 2233455566666677888877777766655
No 444
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=40.43 E-value=96 Score=21.39 Aligned_cols=50 Identities=18% Similarity=0.076 Sum_probs=28.3
Q ss_pred CCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 036003 119 LPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE 171 (558)
Q Consensus 119 ~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 171 (558)
.|....++.++..+++. .-.+.+...+.++.+.|. .+..+|---++.++|
T Consensus 5 ~~~~~l~~Ql~el~Aed--~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAED--HAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34555666666666666 666666666666666663 344555444444443
No 445
>PF13934 ELYS: Nuclear pore complex assembly
Probab=39.77 E-value=2.8e+02 Score=24.90 Aligned_cols=12 Identities=17% Similarity=0.180 Sum_probs=4.9
Q ss_pred cCChHHHHHHHH
Q 036003 339 TGLVDEGWNYFY 350 (558)
Q Consensus 339 ~g~~~~a~~~~~ 350 (558)
.|+.+.|..+++
T Consensus 121 ~~~~~lAL~y~~ 132 (226)
T PF13934_consen 121 RGDPKLALRYLR 132 (226)
T ss_pred CCChhHHHHHHH
Confidence 344444444433
No 446
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=39.73 E-value=3.8e+02 Score=26.40 Aligned_cols=55 Identities=13% Similarity=-0.072 Sum_probs=35.0
Q ss_pred HHHHCCCccHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccCChHHHHHHHHHHHHh
Q 036003 199 AYARSSRPNEALSLFRELQERNLKPTDV--TMLSALSSCA--LLGSLDLGKWIHEYIKKY 254 (558)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 254 (558)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445678888888888888876 555544 3444444444 234666777777766554
No 447
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=39.69 E-value=1.8e+02 Score=22.53 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHH
Q 036003 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319 (558)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 319 (558)
..++|..|.+.+...+. ....+--+-+..+...|++++|+..=.....||...|-+|-. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45566666665555442 122222223344556666666644444444555555544432 355666666666665554
Q ss_pred CC
Q 036003 320 AQ 321 (558)
Q Consensus 320 ~g 321 (558)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 43
No 448
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=38.91 E-value=3.3e+02 Score=25.39 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=7.8
Q ss_pred CccHHHHHHHHHHHCC
Q 036003 205 RPNEALSLFRELQERN 220 (558)
Q Consensus 205 ~~~~A~~~~~~m~~~~ 220 (558)
+..+|...|.+.-+.|
T Consensus 128 d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 128 DLVKALKYYEKAAKLG 143 (292)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 4444555555544444
No 449
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=38.56 E-value=1e+02 Score=19.56 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=13.7
Q ss_pred HCCCccHHHHHHHHHHHCCCCCCHHHHHHH
Q 036003 202 RSSRPNEALSLFRELQERNLKPTDVTMLSA 231 (558)
Q Consensus 202 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 231 (558)
+.|-..++..++++|.+.|+..+...|..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 334444444455555444444444444333
No 450
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=38.48 E-value=4.1e+02 Score=26.39 Aligned_cols=195 Identities=13% Similarity=0.118 Sum_probs=97.6
Q ss_pred HHHHHHHHHhCCCCCh-hHHHHHHHHhhcCCCCCCHHHHHHHHccCCCC------CcccHHHHHHHHhcCCCch-----H
Q 036003 38 KQIHAVTIKTHLQNDL-NVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP------DIVLFNTMARGYSRSKTPI-----R 105 (558)
Q Consensus 38 ~~~~~~~~~~g~~~~~-~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~-----~ 105 (558)
+..|.....-..+||. ..|+.+.+.=-++ .--++-+++.+.+..+ -+.-..++|..||+.+..+ .
T Consensus 39 ~~~W~~~L~V~~K~d~l~~wd~iydLp~Q~---~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~Rn~~Y~~d~g 115 (669)
T KOG3636|consen 39 KSDWMRLLGVSMKPNPLDDWDQIYDLPNQC---ALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCKKRNMDYIKDIG 115 (669)
T ss_pred HHHHHHHhcccCCCCchhhHHHHhCCchhh---HHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhhccCCccccccc
Confidence 5556555544444443 5666666554444 3344555666666542 1223566778888776543 1
Q ss_pred HHHHHHHhHHCCCCCCcccHHHHHHH---HHhcC---cccHHHHHHHHH---------HHHHhCCCChHHHHHHHHHHHH
Q 036003 106 AIFLFVELLNSGLLPDDYSFPSLLKA---CACVG---AEALEEGKQLHC---------FAIKLGLNSNLYVCTTLINLYA 170 (558)
Q Consensus 106 A~~~~~~m~~~g~~p~~~~~~~ll~~---~~~~~---~~~~~~a~~~~~---------~~~~~g~~~~~~~~~~ll~~~~ 170 (558)
=+.+++-+....+ |-..+||..... |.-.+ +|++-...+++- .+-...+.||.++.|-+...++
T Consensus 116 Wi~lL~pl~~L~l-prsd~fN~F~ai~~kYIPkdcrpkg~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFa 194 (669)
T KOG3636|consen 116 WITLLEPLLLLNL-PRSDEFNVFFAITTKYIPKDCRPKGQIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFA 194 (669)
T ss_pred HHHHHHHHHHhcC-CcchhhhhhHhhhhcccCCCCCCCCccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHH
Confidence 2334444433322 344455544332 11110 133222222221 1122357888888888888888
Q ss_pred hCCChHHHHHHHhccCC-CCc--chHHHHHH---H-----HHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036003 171 ECSDVEAARRIFENISE-PCV--VSYNAIIT---A-----YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236 (558)
Q Consensus 171 ~~g~~~~A~~~~~~~~~-~~~--~~~~~li~---~-----~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 236 (558)
.+-..+-...+|+-..+ .|. +-+-++|- + -.+...-++++++++.|...=-.-|..-+-.|...|+
T Consensus 195 s~~Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 195 SSMSTEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred HhhhHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHh
Confidence 87777777777766554 333 22333321 1 1233455678888877764421223334444444443
No 451
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=38.45 E-value=1.5e+02 Score=28.18 Aligned_cols=89 Identities=12% Similarity=0.053 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC--C--CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHH
Q 036003 364 HYGCMVDLLGRAGRLDEAYRFIDEL--P--IKST--PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~~--~--~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
.|.-=.+-|.+..++..|...|.+. . ..|| .+.|+.-..+-...|++..++.=..+++..+|.+..+|..=..+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3444455677888888888888775 1 1233 46676666666778999999999999999999998888887888
Q ss_pred HHhcCChHHHHHHHH
Q 036003 438 CARAGRWEDVDYLRK 452 (558)
Q Consensus 438 ~~~~g~~~~A~~~~~ 452 (558)
+....++++|....+
T Consensus 163 ~~eLe~~~~a~nw~e 177 (390)
T KOG0551|consen 163 LLELERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777777665554443
No 452
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=38.14 E-value=2.1e+02 Score=22.89 Aligned_cols=59 Identities=10% Similarity=0.087 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHH
Q 036003 362 IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILW-RTLLSSCSSHNNLGLAKQVIERI 420 (558)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~ 420 (558)
..+..++.-++.-.|..++|.++++..+-.++-... ..++..|....+.++..++-++.
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 445666777777777777777777777543333222 34666777666666665554443
No 453
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.07 E-value=2.5e+02 Score=24.26 Aligned_cols=23 Identities=9% Similarity=0.263 Sum_probs=15.7
Q ss_pred HHHHHHhCCChHHHHHHHhccCC
Q 036003 165 LINLYAECSDVEAARRIFENISE 187 (558)
Q Consensus 165 ll~~~~~~g~~~~A~~~~~~~~~ 187 (558)
.+-.|.+.|.+++|.+++++..+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34467777777777777777654
No 454
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=37.75 E-value=67 Score=28.66 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=43.5
Q ss_pred HHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 036003 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST 393 (558)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~ 393 (558)
...+.++.+.+-+++.+... -.+-....|-.+...-.++|+++.|.+.+++. .+.|+
T Consensus 4 ~~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 34567888888888888874 33445778888888888999999999888886 55554
No 455
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=37.73 E-value=88 Score=18.47 Aligned_cols=17 Identities=12% Similarity=0.002 Sum_probs=7.9
Q ss_pred HHHHHHhcCCHHHHHHH
Q 036003 400 LLSSCSSHNNLGLAKQV 416 (558)
Q Consensus 400 l~~~~~~~g~~~~a~~~ 416 (558)
+.-.+-..|++++|..+
T Consensus 7 ~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 33344445555555555
No 456
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=36.98 E-value=1e+02 Score=22.59 Aligned_cols=62 Identities=10% Similarity=0.030 Sum_probs=42.3
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHHHHHHHHhcCCCchHH
Q 036003 38 KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRA 106 (558)
Q Consensus 38 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 106 (558)
..|++.+.+.|+ .+ ....-..-+.. .+.+.+.++++.++.+...+|..+..++-..|...-|
T Consensus 19 ~~v~~~L~~~~V-lt---~~~~e~I~~~~---tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGV-FT---PDMIEEIQAAG---SRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCC-CC---HHHHHHHHcCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 567777777774 22 22222233444 6788889999888888888888888888777765444
No 457
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.41 E-value=4.7e+02 Score=28.75 Aligned_cols=132 Identities=13% Similarity=0.176 Sum_probs=85.3
Q ss_pred HHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 036003 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN 347 (558)
Q Consensus 268 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 347 (558)
.....+|+++.|++.-.++. |..+|..|+..-...|+.+-|+..|++... |..|--.|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 34567899999888766654 556799999999999999999998887654 3333334556688777655
Q ss_pred HHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 036003 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423 (558)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 423 (558)
..+....+ .|... ....-.-.|+.++=.+++...+..|- .|-+ ...+|.-++|.++.++.-..
T Consensus 720 m~~iae~r----~D~~~---~~qnalYl~dv~ervkIl~n~g~~~l--aylt----a~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 720 MMKIAEIR----NDATG---QFQNALYLGDVKERVKILENGGQLPL--AYLT----AAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHHHhh----hhhHH---HHHHHHHhccHHHHHHHHHhcCcccH--HHHH----HhhcCcHHHHHHHHHhhccc
Confidence 54444322 22221 11112235788888888888764332 2211 24578888898888887653
No 458
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=36.15 E-value=3.6e+02 Score=25.09 Aligned_cols=78 Identities=15% Similarity=0.003 Sum_probs=39.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcC-------------
Q 036003 380 EAYRFIDELPIKSTPILWRTLLSSCSS----HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG------------- 442 (558)
Q Consensus 380 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------- 442 (558)
.|...+.++-...+......+...|.. ..+.++|...|+++.+.+. ......+. .+...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 455555554222233333444433322 2366677777777766665 23333333 333333
Q ss_pred --ChHHHHHHHHHHHhCCCc
Q 036003 443 --RWEDVDYLRKLMKDRGVL 460 (558)
Q Consensus 443 --~~~~A~~~~~~m~~~g~~ 460 (558)
+...|...+......|..
T Consensus 250 ~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 250 EEDKKQALEWLQKACELGFD 269 (292)
T ss_pred CCCHHHHHHHHHHHHHcCCh
Confidence 666677777776665553
No 459
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=35.46 E-value=3.8e+02 Score=25.07 Aligned_cols=93 Identities=11% Similarity=0.081 Sum_probs=52.5
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHccCCCC----
Q 036003 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDEL-------PIKSTPILW-RTLLSSCSSHNNLGLAKQVIERIFELDDSH---- 427 (558)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---- 427 (558)
-....+..+..-|++.++.+.+.+++.+. +.+-|+... -.|.-.|....-+++-++..+.+++.+-+.
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 34566777888889888888888877664 233333211 112223333344566677777777776332
Q ss_pred -cccHHhHHHHHHhcCChHHHHHHHHHH
Q 036003 428 -GGDYVILSNLCARAGRWEDVDYLRKLM 454 (558)
Q Consensus 428 -~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (558)
..+|..+- +....++.+|..++-..
T Consensus 193 RyK~Y~Gi~--~m~~RnFkeAa~Ll~d~ 218 (412)
T COG5187 193 RYKVYKGIF--KMMRRNFKEAAILLSDI 218 (412)
T ss_pred hHHHHHHHH--HHHHHhhHHHHHHHHHH
Confidence 22333322 22334677777776554
No 460
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.45 E-value=1.2e+02 Score=20.63 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=8.0
Q ss_pred HHHHHHhCCChHHHHHHHh
Q 036003 165 LINLYAECSDVEAARRIFE 183 (558)
Q Consensus 165 ll~~~~~~g~~~~A~~~~~ 183 (558)
+|.+|...|++++|.+..+
T Consensus 29 vI~gllqlg~~~~a~eYi~ 47 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIK 47 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 3444444444444444443
No 461
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=35.38 E-value=3.9e+02 Score=25.28 Aligned_cols=109 Identities=15% Similarity=-0.012 Sum_probs=67.8
Q ss_pred hHHHHHHHHHchhhcCC---CCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036003 342 VDEGWNYFYSMRDKYGI---VPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418 (558)
Q Consensus 342 ~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 418 (558)
.+.|.+.|+.......- ..+......+.....+.|..+.-..+++.....++...-..++.+.....+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56778888888763111 345666677777788888877666666666545677788889999999999999999999
Q ss_pred HHHccC-CCCcccHHhHHHHHHhcCCh--HHHHHHH
Q 036003 419 RIFELD-DSHGGDYVILSNLCARAGRW--EDVDYLR 451 (558)
Q Consensus 419 ~~~~~~-~~~~~~~~~l~~~~~~~g~~--~~A~~~~ 451 (558)
.++..+ -.... ...++..+...+.. +.+.+.+
T Consensus 226 ~~l~~~~v~~~d-~~~~~~~~~~~~~~~~~~~~~~~ 260 (324)
T PF11838_consen 226 LLLSNDKVRSQD-IRYVLAGLASSNPVGRDLAWEFF 260 (324)
T ss_dssp HHHCTSTS-TTT-HHHHHHHHH-CSTTCHHHHHHHH
T ss_pred HHcCCcccccHH-HHHHHHHHhcCChhhHHHHHHHH
Confidence 999854 22333 33444444433333 5555544
No 462
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=33.41 E-value=3.3e+02 Score=23.75 Aligned_cols=50 Identities=10% Similarity=0.179 Sum_probs=23.9
Q ss_pred HHhcCCHHHHHHHHhccCCC------CHHhHHHHHH-HHHHCCC--hHHHHHHHHHHHH
Q 036003 270 HAKCGRLDDAVSVFDNMSGK------DTQAWSAMIV-AYATHGQ--GHKSILMFEEMMK 319 (558)
Q Consensus 270 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~-~~~~~~~--~~~a~~~~~~m~~ 319 (558)
....|++++|..-++++.+. -...|..+.. +++.++. +-+|..++.-+..
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 44456666666665555321 2223444443 4444443 3445555554444
No 463
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=32.60 E-value=1.4e+02 Score=27.56 Aligned_cols=60 Identities=17% Similarity=0.112 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 398 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
+.+=.++.+.++++.|.+..++.+..+|.++.-..--+-+|.+.|.+.-|..-++...+.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 344457888999999999999999999999888888888999999999999988876654
No 464
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=32.57 E-value=58 Score=34.16 Aligned_cols=92 Identities=15% Similarity=0.077 Sum_probs=37.9
Q ss_pred ccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 036003 88 VLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLIN 167 (558)
Q Consensus 88 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 167 (558)
..|..-+..+...++.. ....+.+...-.-.+.....-++..|.+. |-.+.+.++.+.+-..-+ ...-|..-+.
T Consensus 373 ~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~--~L~~~a~~I~~~~~~~~~--~~~~~g~AL~ 446 (566)
T PF07575_consen 373 SLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAEL--GLEDVAREICKILGQRLL--KEGRYGEALS 446 (566)
T ss_dssp TTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred chHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHH--HCCCHHHHHH
Confidence 33554444444433222 44444444332223445556667777777 677777777766554422 2334556666
Q ss_pred HHHhCCChHHHHHHHhcc
Q 036003 168 LYAECSDVEAARRIFENI 185 (558)
Q Consensus 168 ~~~~~g~~~~A~~~~~~~ 185 (558)
-+.++|+......+-+.+
T Consensus 447 ~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 447 WFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHH---------------
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 677777776665555444
No 465
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=32.40 E-value=6.1e+02 Score=26.63 Aligned_cols=64 Identities=14% Similarity=0.131 Sum_probs=46.0
Q ss_pred CCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCC-cccHHHHHHHHhcCCCchHHHHHHHHhHHCCC
Q 036003 50 QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPD-IVLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118 (558)
Q Consensus 50 ~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 118 (558)
.+....+..|+..+... +.+....+++++.. . ...|..+++++...|-.....-+.+.+....+
T Consensus 307 ~~~~~~f~~lv~~lR~~----~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 307 EPAAAKFLRLVRLLRTL----SEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred cchHHHHHHHHHHHHhC----CHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 45677888888888876 78888888887765 3 57888899999999876555555554444333
No 466
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=32.20 E-value=3.9e+02 Score=24.23 Aligned_cols=160 Identities=14% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 036003 93 MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172 (558)
Q Consensus 93 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 172 (558)
++...-+.|++++++..+.++...+...+..--+.+-.+|-..- |....+.+++..+....-.-.......++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i-~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVI-GSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcc-ccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHH
Q ss_pred ------CChHHHHHHHhccCCCCcchHHHHHHHHHHCCCc-----------------cHHHHHHHHHHHC---CCCCCHH
Q 036003 173 ------SDVEAARRIFENISEPCVVSYNAIITAYARSSRP-----------------NEALSLFRELQER---NLKPTDV 226 (558)
Q Consensus 173 ------g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~-----------------~~A~~~~~~m~~~---~~~p~~~ 226 (558)
.--.+...+.+...-|...+-.+.+..+--.|++ +.|.+.|++..+. .++|...
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Q ss_pred HHHHHHHHHh-----ccCChHHHHHHHHHHHH
Q 036003 227 TMLSALSSCA-----LLGSLDLGKWIHEYIKK 253 (558)
Q Consensus 227 ~~~~ll~~~~-----~~~~~~~a~~~~~~~~~ 253 (558)
++..++--++ -.|+.++|.++.+...+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
No 467
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=31.40 E-value=2.4e+02 Score=22.52 Aligned_cols=42 Identities=14% Similarity=0.297 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhCCCCh-HHHHHHHHHHHHhCCChHHHHHHHh
Q 036003 142 EGKQLHCFAIKLGLNSN-LYVCTTLINLYAECSDVEAARRIFE 183 (558)
Q Consensus 142 ~a~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~ 183 (558)
...++|..|.+.|+-.. ...|......+-..|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34556666666665433 3345555556666677777776664
No 468
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=31.40 E-value=2.8e+02 Score=23.92 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=10.1
Q ss_pred HHhhcCCHHHHHHHHHhC
Q 036003 371 LLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 371 ~~~~~g~~~~A~~~~~~~ 388 (558)
.|.+.|.+++|.+++++.
T Consensus 120 VCm~~g~Fk~A~eiLkr~ 137 (200)
T cd00280 120 VCMENGEFKKAEEVLKRL 137 (200)
T ss_pred HHHhcCchHHHHHHHHHH
Confidence 455555555555555555
No 469
>PRK09857 putative transposase; Provisional
Probab=31.35 E-value=3e+02 Score=25.89 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 036003 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLK 461 (558)
Q Consensus 397 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 461 (558)
+..++....+.++.++..++++...+..|.......+++.-+.+.|..+++.++.++|...|+..
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 34455444566777777777777766655555566677777888888888899999999888864
No 470
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=31.10 E-value=4.6e+02 Score=24.76 Aligned_cols=21 Identities=14% Similarity=0.523 Sum_probs=14.0
Q ss_pred HHhHHHHHHHHHHCCChHHHH
Q 036003 291 TQAWSAMIVAYATHGQGHKSI 311 (558)
Q Consensus 291 ~~~~~~li~~~~~~~~~~~a~ 311 (558)
.-.|.-|+.+++..|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 345777777777777766443
No 471
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=30.89 E-value=7.4e+02 Score=27.07 Aligned_cols=133 Identities=12% Similarity=0.043 Sum_probs=70.9
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhc-CcccHHHHHHHHHHHHHhCCCChHHHH--
Q 036003 86 DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV-GAEALEEGKQLHCFAIKLGLNSNLYVC-- 162 (558)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-~~~~~~~a~~~~~~~~~~g~~~~~~~~-- 162 (558)
+...+..||..+-+.|++++....-.+|.+. .+.+...|...+...... ..++..++...|++.+.....++...+
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~iw~e~~ 190 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVPIWEEVV 190 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccchHHHHHH
Confidence 4555667777888888887777777777664 223445555555443322 125666677777766654433332221
Q ss_pred HHH---HHHHHhCCChHHHHHHHhccCC-------CCcchHHHHH---HHHHHCCCccHHHHHHHHHHHC
Q 036003 163 TTL---INLYAECSDVEAARRIFENISE-------PCVVSYNAII---TAYARSSRPNEALSLFRELQER 219 (558)
Q Consensus 163 ~~l---l~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~ 219 (558)
+-+ ++.+-+.++++..+.+|++... .....|-..+ ..|..+-..++...+|..-...
T Consensus 191 ~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~ 260 (881)
T KOG0128|consen 191 NYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ 260 (881)
T ss_pred HHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 111 1223345677778888877654 1122232222 3344444445666666655543
No 472
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.78 E-value=1.7e+02 Score=26.72 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=6.7
Q ss_pred HHHhcCCCchHHHHHH
Q 036003 95 RGYSRSKTPIRAIFLF 110 (558)
Q Consensus 95 ~~~~~~g~~~~A~~~~ 110 (558)
+.|...|++..|++-|
T Consensus 18 rl~l~~~~~~~Av~q~ 33 (247)
T PF11817_consen 18 RLYLWLNQPTEAVRQF 33 (247)
T ss_pred HHHHhCCCHHHHHHHH
Confidence 3444444444444433
No 473
>PRK14700 recombination factor protein RarA; Provisional
Probab=30.77 E-value=4.6e+02 Score=24.71 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=17.6
Q ss_pred CCCChhHHHHHHHHhhcCCCCCCHHHHHHHHcc
Q 036003 49 LQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81 (558)
Q Consensus 49 ~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~ 81 (558)
+..+......++... . |+...|...++.
T Consensus 63 ~~i~~~al~~ia~~a--~---GDaR~aLN~LE~ 90 (300)
T PRK14700 63 FKIDDGLYNAMHNYN--E---GDCRKILNLLER 90 (300)
T ss_pred CCcCHHHHHHHHHhc--C---CHHHHHHHHHHH
Confidence 345556666655533 2 788888777776
No 474
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=30.38 E-value=2.8e+02 Score=29.16 Aligned_cols=74 Identities=19% Similarity=0.168 Sum_probs=41.0
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCChH------HHHHHHhccC-CCCcchHHHHH
Q 036003 127 SLLKACACVGAEALEEGKQLHCFAIKLG--LNSNLYVCTTLINLYAECSDVE------AARRIFENIS-EPCVVSYNAII 197 (558)
Q Consensus 127 ~ll~~~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~g~~~------~A~~~~~~~~-~~~~~~~~~li 197 (558)
+|+.+|... |++-.+.++++.+.... -+.=...+|..|+-..+.|.++ .|.++++... .-|..||..|+
T Consensus 33 sl~eacv~n--~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~ 110 (1117)
T COG5108 33 SLFEACVYN--GDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLC 110 (1117)
T ss_pred HHHHHHHhc--chHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHH
Confidence 677777777 77777777777766542 1222345666666666666543 3333333322 24555565555
Q ss_pred HHHHH
Q 036003 198 TAYAR 202 (558)
Q Consensus 198 ~~~~~ 202 (558)
.+-..
T Consensus 111 ~~sln 115 (1117)
T COG5108 111 QASLN 115 (1117)
T ss_pred HhhcC
Confidence 54433
No 475
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=30.14 E-value=6e+02 Score=25.83 Aligned_cols=45 Identities=16% Similarity=0.089 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhc
Q 036003 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 441 (558)
+|| ..-.|...|+.-.|.+.|.+....-..+|..|..|..+|..+
T Consensus 338 lYN-cG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 338 LYN-CGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHh-hhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 344 455678899999999999999998888889999999998654
No 476
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=29.92 E-value=1.3e+02 Score=22.31 Aligned_cols=60 Identities=10% Similarity=0.218 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHHHHHHHHhcCCCc
Q 036003 37 LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTP 103 (558)
Q Consensus 37 ~~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 103 (558)
+..|.+.+.+.|+-.+ . ..-...+.. .+.+.+.++++.++.....+|..+..++-..|..
T Consensus 22 ~~~v~~~L~~~gvlt~-~---~~~~I~~~~---t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 22 LDELLIHLLQKDILTD-S---MAESIMAKP---TSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred HHHHHHHHHHcCCCCH-H---HHHHHHcCC---CcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 3667777777774222 2 222233344 6778888888888888888888888888665543
No 477
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=29.75 E-value=3.2e+02 Score=22.49 Aligned_cols=60 Identities=15% Similarity=0.091 Sum_probs=25.1
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036003 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275 (558)
Q Consensus 215 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 275 (558)
.+.+.|++++..- ..++..+.+.++.-.|..+++.+.+.+...+..|.-.-++.+...|-
T Consensus 11 ~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 11 RLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3344444443322 12333344444445555555555554444433322223444444443
No 478
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=29.72 E-value=2.3e+02 Score=20.77 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=23.3
Q ss_pred hcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChH
Q 036003 272 KCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGH 308 (558)
Q Consensus 272 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 308 (558)
...+.++|.++++.++.++..+|..+..++...|...
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 3345666666666666666666666666666655443
No 479
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=29.59 E-value=8.6e+02 Score=27.44 Aligned_cols=283 Identities=12% Similarity=0.040 Sum_probs=143.1
Q ss_pred HHHHhCCChHHHHHHHhccCC--CC-cchHHHH-------HHHHHHCC---CccHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036003 167 NLYAECSDVEAARRIFENISE--PC-VVSYNAI-------ITAYARSS---RPNEALSLFRELQERNLKPTDVTMLSALS 233 (558)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l-------i~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 233 (558)
+++.....++.|...++++.. |+ ...|.++ +.-....| .+++|+.-|+.+... +.-+--|..-.-
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 560 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEYLGKAL 560 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHHHhHHH
Confidence 566667788889988888865 32 2223222 22222333 356677777766543 334455666667
Q ss_pred HHhccCChHHHHHHHHHHHHhC-CCCchh------HHHHHHHHHHhc------------------CCHHHHHHHHhccCC
Q 036003 234 SCALLGSLDLGKWIHEYIKKYG-LDKYVK------VNTALIDMHAKC------------------GRLDDAVSVFDNMSG 288 (558)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~------~~~~l~~~~~~~------------------g~~~~A~~~~~~~~~ 288 (558)
+|.+.|++++-.+.+....++- -.|-.. +|. |-....+. -...+-.++|+.+..
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYR-LHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEILYH 639 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHh
Confidence 7888888888777776665542 222211 111 11111111 111222333433321
Q ss_pred C-----------CHHh-HH---HHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHch
Q 036003 289 K-----------DTQA-WS---AMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353 (558)
Q Consensus 289 ~-----------~~~~-~~---~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 353 (558)
+ .+.. -. .+.-+|. .|..---.++|++..+ .++..+...+.-+.+..|.++-+.+....+.
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (932)
T PRK13184 640 KQQATLFCQLDKTPLQFRSSKMELFLSFW-SGFTPFLPELFQRAWD---LRDYRALADIFYVACDLGNWEFFSQFSDILA 715 (932)
T ss_pred hccCCceeeccCchhhhhhhhHHHHHHHH-hcCchhhHHHHHHHhh---cccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1 1111 11 1111111 2333344455565554 2344556666666688899888877766665
Q ss_pred hhc---CCCCCh--------hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 036003 354 DKY---GIVPGI--------KHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422 (558)
Q Consensus 354 ~~~---~~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 422 (558)
+.. ..+-+. ..|-.=+.++.....++++.+.+...+..--...+..++.-+...++.+...++.+.+..
T Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (932)
T PRK13184 716 EVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDPTLILYAFDLFAIQALLDEEGESIIQLLQLIYD 795 (932)
T ss_pred HHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 421 111111 112222455556667777777666653111123334444444455666666666655554
Q ss_pred cCCCC---cccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 423 LDDSH---GGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 423 ~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
...+. ......-+.+|.-..+|++|.+++.....
T Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (932)
T PRK13184 796 YVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPL 832 (932)
T ss_pred ccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCCh
Confidence 43222 12334456677777889999988865543
No 480
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=29.59 E-value=2.9e+02 Score=22.02 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHh
Q 036003 243 LGKWIHEYIKKYGLDKY-VKVNTALIDMHAKCGRLDDAVSVFD 284 (558)
Q Consensus 243 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 284 (558)
.+..+|..|...|+-.. ...|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555555443322 3344445555555555555555554
No 481
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=29.58 E-value=4.8e+02 Score=24.46 Aligned_cols=114 Identities=9% Similarity=0.104 Sum_probs=69.5
Q ss_pred CHHHHHHHHhccCC-----CCHHhHHHHHHHHHHC-CC-hHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHccCChHHHH
Q 036003 275 RLDDAVSVFDNMSG-----KDTQAWSAMIVAYATH-GQ-GHKSILMFEEMM-KAQVSPDEITFLGLLYACSHTGLVDEGW 346 (558)
Q Consensus 275 ~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~-~~-~~~a~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 346 (558)
.+.+|+.+|+.... .|..+...+++..... +. ...-.++.+-+. ..|-.++..+...++..++..+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566777763322 2555555555555542 11 111122222222 2235566777777888888888888888
Q ss_pred HHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
++|.......+..-|...|..+|......|+..-..++.++-
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 888776653234557777888888888888888777777764
No 482
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=29.14 E-value=5.3e+02 Score=24.85 Aligned_cols=133 Identities=10% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 036003 165 LINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244 (558)
Q Consensus 165 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 244 (558)
+.+.++|.++.+.+..+-+.+..--.....++..++-...-.+...+.+.+..+.. ||......++++.+........
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~--~d~~~~~a~lRAls~~~~~~~~ 249 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA--PDLELLSALLRALSSAPASDLV 249 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHcCCCchhHH
Q ss_pred HHHHHHHHHhCCCCchhHHHHH-HHHHHhcCCHHHHHHHHhccCCCC-HHhHHHHHH
Q 036003 245 KWIHEYIKKYGLDKYVKVNTAL-IDMHAKCGRLDDAVSVFDNMSGKD-TQAWSAMIV 299 (558)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~ 299 (558)
...+..+.......+..+..++ .+.+.-..+.+.+..+++++-..+ ...|+.+..
T Consensus 250 ~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~~~~~lF~qlfa 306 (340)
T PF12069_consen 250 AILIDALLQSPRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQDDQALFNQLFA 306 (340)
T ss_pred HHHHHHHhcCcccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcccHHHHHHHHHH
No 483
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=29.02 E-value=3.3e+02 Score=28.02 Aligned_cols=57 Identities=7% Similarity=0.052 Sum_probs=31.2
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 036003 366 GCMVDLLGRAGRLDEAYRFIDELPIKST-P---ILWRTLLSSCSSHNNLGLAKQVIERIFE 422 (558)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 422 (558)
..|+.-|.+.+++++|..++..|.-... . .+.+.+.+.+.+..-.++.+..++.++.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 3456667777777777777777732211 1 2333344445555445555555666554
No 484
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=28.90 E-value=4.7e+02 Score=24.13 Aligned_cols=154 Identities=12% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-----HHHHHHHHHchhhcCCCCChhHHHHH
Q 036003 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV-----DEGWNYFYSMRDKYGIVPGIKHYGCM 368 (558)
Q Consensus 294 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-----~~a~~~~~~~~~~~~~~~~~~~~~~l 368 (558)
.+.++..+.+.+....|..+.+.+.. .+-=....-.|+......... ......+.... .+-.....|..+
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~--l~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~---~ll~~f~~~l~I 159 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRS--LPYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVI---SLLQEFPEYLEI 159 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhcc--CCCcHHHHHHHHHHHHhhcccccccccchHHHHHHHH---HHHHcCcchHHH
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CC-----CcccHHhHHHHHHhc
Q 036003 369 VDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD--DS-----HGGDYVILSNLCARA 441 (558)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~-----~~~~~~~l~~~~~~~ 441 (558)
+..|.|.-+...=..+|+..+ .| ..|+.-|.+.|+++.|-.++--+...+ .. ....-..|+......
T Consensus 160 vv~C~RKtE~~~W~~LF~~lg-~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~ 233 (258)
T PF07064_consen 160 VVNCARKTEVRYWPYLFDYLG-SP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALES 233 (258)
T ss_pred HHHHHHhhHHHHHHHHHHhcC-CH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhc
Q ss_pred CChHHHHHHHHHHHhCC
Q 036003 442 GRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 442 g~~~~A~~~~~~m~~~g 458 (558)
|+|+-+.++.+-+...+
T Consensus 234 ~~w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 234 GDWDLCFELVRFLKALD 250 (258)
T ss_pred ccHHHHHHHHHHHHHhC
No 485
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=28.86 E-value=4.9e+02 Score=24.33 Aligned_cols=158 Identities=12% Similarity=0.036 Sum_probs=86.1
Q ss_pred HHHHHCCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHccCChHHHHHHHH---HchhhcCCCCChhHHHHH
Q 036003 299 VAYATHGQGHKSILMFEEMMKAQVSPDEI-------TFLGLLYACSHTGLVDEGWNYFY---SMRDKYGIVPGIKHYGCM 368 (558)
Q Consensus 299 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~~~~~~g~~~~a~~~~~---~~~~~~~~~~~~~~~~~l 368 (558)
.-..+.+++++|+..+.+....|+..+.. +...+...|...|++..--+... +....+.-+.......+|
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtL 90 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTL 90 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHH
Confidence 33456677788888888888777765543 34456666777776544333322 222222222334455555
Q ss_pred HHHHhhc-CCHHHHHHHHHhC---CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHH----ccC--CCCcccHHh
Q 036003 369 VDLLGRA-GRLDEAYRFIDEL---PIKST-----PILWRTLLSSCSSHNNLGLAKQVIERIF----ELD--DSHGGDYVI 433 (558)
Q Consensus 369 i~~~~~~-g~~~~A~~~~~~~---~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~--~~~~~~~~~ 433 (558)
+..+... ..++..+++.... ..+.. ...-.-++..+.+.|++.+|+.+....+ +.+ +.-...|..
T Consensus 91 iekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhll 170 (421)
T COG5159 91 IEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLL 170 (421)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhh
Confidence 5555432 3344444444432 00111 1112346677788888888887765543 333 333344555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 036003 434 LSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 434 l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
=..+|....+..++..-+...+-
T Consensus 171 ESKvyh~irnv~KskaSLTaArt 193 (421)
T COG5159 171 ESKVYHEIRNVSKSKASLTAART 193 (421)
T ss_pred hHHHHHHHHhhhhhhhHHHHHHH
Confidence 56667777777777777766655
No 486
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=28.83 E-value=1.4e+02 Score=29.45 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC-----------CCHHhHHHHHHHHHHCCChHHHHHHHHHHH
Q 036003 264 TALIDMHAKCGRLDDAVSVFDNMSG-----------KDTQAWSAMIVAYATHGQGHKSILMFEEMM 318 (558)
Q Consensus 264 ~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 318 (558)
-.|++.++-.|++..|+++++.+.- -.+.++-.+.-+|...+++.+|.+.|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666777777776665531 134456666777777777777777777654
No 487
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=28.58 E-value=2.9e+02 Score=25.15 Aligned_cols=54 Identities=19% Similarity=0.116 Sum_probs=26.7
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHccCChHHHHHHH
Q 036003 296 AMIVAYATHGQGHKSILMFEEMMK----AQ-VSPDEITFLGLLYACSHTGLVDEGWNYF 349 (558)
Q Consensus 296 ~li~~~~~~~~~~~a~~~~~~m~~----~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 349 (558)
.+..-|...|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+-
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344555666666666666665532 12 1122334444555555556655554443
No 488
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.52 E-value=5.6e+02 Score=24.91 Aligned_cols=108 Identities=15% Similarity=0.248 Sum_probs=51.9
Q ss_pred cHHHHHHHHhcCCCchHHHHHHHHhHHC--C----CCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHH
Q 036003 89 LFNTMARGYSRSKTPIRAIFLFVELLNS--G----LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVC 162 (558)
Q Consensus 89 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g----~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 162 (558)
....++..+.+.+++..++..++.-... + +.|.....-..-.++.-.+.++++.|+-++...+. .|...+-
T Consensus 142 ~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~---~Pa~~vs 218 (422)
T KOG2582|consen 142 IHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVT---TPAMAVS 218 (422)
T ss_pred hHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh---cchhHHH
Confidence 3445666677777776665554432211 1 12211111111112222223789999999888775 3443333
Q ss_pred HHHHHHH--------HhCCCh--------HHHHHHHhccCCCCcchHHHHHHHHHHC
Q 036003 163 TTLINLY--------AECSDV--------EAARRIFENISEPCVVSYNAIITAYARS 203 (558)
Q Consensus 163 ~~ll~~~--------~~~g~~--------~~A~~~~~~~~~~~~~~~~~li~~~~~~ 203 (558)
...+.+| .-.|+. ..|.+.|+.|. ..|.-+..+|.+.
T Consensus 219 ~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms----~pY~ef~~~Y~~~ 271 (422)
T KOG2582|consen 219 HIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMS----NPYHEFLNVYLKD 271 (422)
T ss_pred HHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCC----chHHHHHHHHhcC
Confidence 3333333 334554 34455555443 2355555555544
No 489
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=28.46 E-value=3e+02 Score=23.39 Aligned_cols=18 Identities=0% Similarity=-0.169 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhCCCCc
Q 036003 242 DLGKWIHEYIKKYGLDKY 259 (558)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~ 259 (558)
-.|.++++.+.+.+...+
T Consensus 42 lSa~eI~~~L~~~~~~is 59 (169)
T PRK11639 42 ISAYDLLDLLREAEPQAK 59 (169)
T ss_pred CCHHHHHHHHHhhCCCCC
Confidence 344444444444443333
No 490
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=28.40 E-value=3.6e+02 Score=28.37 Aligned_cols=94 Identities=16% Similarity=0.111 Sum_probs=40.4
Q ss_pred CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 036003 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALID 268 (558)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 268 (558)
+...|..-+..+...++.. ...++.+...-...+......++..|.+.|-.+.+..+.+.+-..-. ...-|..-+.
T Consensus 371 ~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~ 446 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALS 446 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHH
Confidence 3334554444444333222 45555555443334555667777888888888887777776644322 1233455566
Q ss_pred HHHhcCCHHHHHHHHhcc
Q 036003 269 MHAKCGRLDDAVSVFDNM 286 (558)
Q Consensus 269 ~~~~~g~~~~A~~~~~~~ 286 (558)
.+.++|+...+..+-+.+
T Consensus 447 ~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 447 WFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHH---------------
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 677777776665554444
No 491
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=28.13 E-value=1.6e+02 Score=22.75 Aligned_cols=21 Identities=24% Similarity=0.121 Sum_probs=10.4
Q ss_pred HHHHHhcCCCchHHHHHHHHh
Q 036003 93 MARGYSRSKTPIRAIFLFVEL 113 (558)
Q Consensus 93 li~~~~~~g~~~~A~~~~~~m 113 (558)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444455555555555554
No 492
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=27.92 E-value=2.6e+02 Score=27.91 Aligned_cols=47 Identities=19% Similarity=0.189 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
.+.+.-+..+.+.+++..|..+.+++++++|+.. ..++|.++++.-.
T Consensus 301 LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~--------------~a~qArKil~~~e 347 (422)
T PF06957_consen 301 LALRSAMSQAFKLKNFITAASFARRLLELNPSPE--------------VAEQARKILQACE 347 (422)
T ss_dssp HHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH--------------HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH--------------HHHHHHHHHHHHh
Confidence 4667777888899999999999999999987541 2345677766554
No 493
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=27.86 E-value=2.8e+02 Score=21.29 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=14.0
Q ss_pred HHHHHHhcCCCchHHHHHHHHhH
Q 036003 92 TMARGYSRSKTPIRAIFLFVELL 114 (558)
Q Consensus 92 ~li~~~~~~g~~~~A~~~~~~m~ 114 (558)
.++..|...|++++|.+.+.++.
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhC
Confidence 34555566666666666666653
No 494
>PF04823 Herpes_UL49_2: Herpesvirus UL49 tegument protein; InterPro: IPR006908 This is a family of herpesvirus UL49 tegument proteins. It was shown that interactions between herpesvirus envelope and tegument proteins may play a role in secondary envelopment during herpesvirus virion maturation.
Probab=27.77 E-value=77 Score=23.55 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHhccC
Q 036003 2 ATTPSPPITQSPPPKLCTNTPNALSLLPRCTS 33 (558)
Q Consensus 2 ~~~ps~~~~~~~~~~~~p~~~~~~~ll~~~~~ 33 (558)
|++|+.|++|..++....+...|...+...+.
T Consensus 19 S~tP~s~t~pW~~~T~~fNkrvFC~AV~~vAa 50 (96)
T PF04823_consen 19 STTPKSPTSPWRGATHAFNKRVFCAAVGRVAA 50 (96)
T ss_pred CCCCCCCCCCCcCCcccchhHHHHHHHHHHHH
Confidence 56777777777777666777777777665543
No 495
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=27.74 E-value=1.2e+02 Score=28.35 Aligned_cols=80 Identities=8% Similarity=0.022 Sum_probs=0.0
Q ss_pred CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhH
Q 036003 358 IVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL--PIKSTPILWRT-LLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434 (558)
Q Consensus 358 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 434 (558)
...|+..|...+.-..+.|.+.+...+|.+. ..+.|+..|-. .-.-+...++++.+..+|.+.+..+|.+|..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Q ss_pred HHH
Q 036003 435 SNL 437 (558)
Q Consensus 435 ~~~ 437 (558)
...
T Consensus 183 fr~ 185 (435)
T COG5191 183 FRM 185 (435)
T ss_pred HHH
No 496
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=26.78 E-value=6.2e+02 Score=24.88 Aligned_cols=85 Identities=13% Similarity=0.050 Sum_probs=50.2
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHccCChHHHHHHHHHchhhcCCCCCh--
Q 036003 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL------------LYACSHTGLVDEGWNYFYSMRDKYGIVPGI-- 362 (558)
Q Consensus 297 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-- 362 (558)
+...+-..|+.++|..++.+..- .||.++ ++.|...+++-.|.-+-+++..++--.|+.
T Consensus 137 L~~ike~~Gdi~~Aa~il~el~V-------ETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~ 209 (439)
T KOG1498|consen 137 LAKIKEEQGDIAEAADILCELQV-------ETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQE 209 (439)
T ss_pred HHHHHHHcCCHHHHHHHHHhcch-------hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHH
Confidence 44445556666666666555321 222221 345566677777777777776654444553
Q ss_pred ---hHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 363 ---KHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 363 ---~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
..|+.++......+.+-.+-+.++..
T Consensus 210 lKlkyY~lmI~l~lh~~~Yl~v~~~Yrai 238 (439)
T KOG1498|consen 210 LKLKYYELMIRLGLHDRAYLNVCRSYRAI 238 (439)
T ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 34677777777777777777777766
No 497
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=26.60 E-value=6.4e+02 Score=24.99 Aligned_cols=89 Identities=17% Similarity=0.146 Sum_probs=56.8
Q ss_pred ccHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHhCCChHHHHHHHhccC---CCCcchHHHHHHHHHHC---CCccHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNL-YVCTTLINLYAECSDVEAARRIFENIS---EPCVVSYNAIITAYARS---SRPNEAL 210 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~---g~~~~A~ 210 (558)
|+...++..++.+.... .++. .+ .+...+++.+-. ..+-..+..+|+++.++ .+++.|+
T Consensus 204 GD~R~aLN~LE~~~~~~-~~~~~~~-------------~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAAL 269 (436)
T COG2256 204 GDARRALNLLELAALSA-EPDEVLI-------------LELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAAL 269 (436)
T ss_pred chHHHHHHHHHHHHHhc-CCCcccC-------------HHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHH
Confidence 88999999888887654 2222 11 233333333321 24555566678887664 7899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 036003 211 SLFRELQERNLKPTDVTMLSALSSCALLGS 240 (558)
Q Consensus 211 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 240 (558)
-.+.+|.+.|-.|....-..++-++...|.
T Consensus 270 yylARmi~~GeDp~yiARRlv~~AsEDIGl 299 (436)
T COG2256 270 YYLARMIEAGEDPLYIARRLVRIASEDIGL 299 (436)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccC
Confidence 999999999976665555555555555553
No 498
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.51 E-value=2e+02 Score=21.78 Aligned_cols=43 Identities=16% Similarity=0.068 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHccC-CCCcccHHhHHHHHHhcCChHHHHHHHHH
Q 036003 411 GLAKQVIERIFELD-DSHGGDYVILSNLCARAGRWEDVDYLRKL 453 (558)
Q Consensus 411 ~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 453 (558)
.+-++.++++...+ +..|..+..|.-.|++.|+-+.|.+-|+.
T Consensus 54 ~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 54 AALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 33444555554444 44455666777777777777777776664
No 499
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.32 E-value=3.1e+02 Score=23.29 Aligned_cols=38 Identities=8% Similarity=-0.085 Sum_probs=18.9
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCh
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDV 175 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 175 (558)
...-.|.++++.+.+.+...+..|.-.-|..+.+.|-+
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 33445556666665555444444433344555555543
No 500
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=26.08 E-value=7.8e+02 Score=25.83 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHhccCCCC-cchHHHHHHHHHHCCCccHHHHHHHHHHH
Q 036003 158 NLYVCTTLINLYAECSDVEAARRIFENISEPC-VVSYNAIITAYARSSRPNEALSLFRELQE 218 (558)
Q Consensus 158 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (558)
....+..|+..+ |.-+.+.-.++++++.. . ...+..++++....|-......+.+.+..
T Consensus 309 ~~~~f~~lv~~l-R~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~ 368 (574)
T smart00638 309 AAAKFLRLVRLL-RTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKN 368 (574)
T ss_pred hHHHHHHHHHHH-HhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 344555555544 33444555555555543 2 45666667777777654444444444433
Done!