Query 036003
Match_columns 558
No_of_seqs 628 out of 4054
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 14:14:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036003.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036003hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.1E-37 3.9E-42 326.6 36.7 426 19-457 82-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.9E-34 6.4E-39 302.2 36.0 408 18-439 114-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 5.8E-27 2E-31 231.5 38.0 370 61-442 7-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-26 6E-31 228.0 39.2 354 93-457 5-368 (388)
5 4g26_A Pentatricopeptide repea 100.0 2E-28 6.7E-33 246.5 23.0 197 142-338 8-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 8E-29 2.7E-33 249.3 19.5 186 88-273 27-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.7E-23 6E-28 214.5 31.5 394 53-458 6-479 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.3E-22 4.6E-27 207.9 29.9 394 29-434 14-489 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 5E-22 1.7E-26 200.1 33.4 319 86-437 25-372 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 6.8E-22 2.3E-26 199.1 34.1 346 50-427 23-414 (450)
11 3fp2_A TPR repeat-containing p 99.9 7.7E-21 2.6E-25 196.0 34.0 388 53-458 25-492 (537)
12 3fp2_A TPR repeat-containing p 99.9 5.9E-20 2E-24 189.4 28.9 393 24-431 28-499 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 4.9E-19 1.7E-23 172.1 33.5 303 124-457 5-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 5.5E-19 1.9E-23 171.8 31.3 324 86-441 2-353 (359)
15 1b89_A Protein (clathrin heavy 99.8 2.3E-19 7.7E-24 172.2 22.2 289 64-388 14-308 (449)
16 3hym_B Cell division cycle pro 99.8 1.9E-18 6.5E-23 165.9 27.6 285 157-444 20-321 (330)
17 2xm6_A Protein corresponding t 99.8 4.1E-17 1.4E-21 165.9 36.6 367 50-440 36-452 (490)
18 1fch_A Peroxisomal targeting s 99.8 1.8E-18 6E-23 169.1 23.4 280 170-453 36-355 (368)
19 3hym_B Cell division cycle pro 99.8 3.5E-17 1.2E-21 157.1 31.0 286 86-410 21-321 (330)
20 2xm6_A Protein corresponding t 99.8 3.4E-16 1.2E-20 159.1 39.9 353 84-459 36-434 (490)
21 2ooe_A Cleavage stimulation fa 99.8 2.7E-16 9.1E-21 161.6 37.3 394 50-456 10-491 (530)
22 4eqf_A PEX5-related protein; a 99.8 4.9E-18 1.7E-22 165.8 20.9 261 189-453 64-352 (365)
23 1fch_A Peroxisomal targeting s 99.8 2.7E-17 9.1E-22 160.7 22.8 285 99-421 37-357 (368)
24 3mkr_A Coatomer subunit epsilo 99.8 3.6E-16 1.2E-20 146.8 28.7 270 167-450 7-287 (291)
25 1b89_A Protein (clathrin heavy 99.8 2.5E-18 8.4E-23 165.0 11.5 279 138-450 17-304 (449)
26 3cv0_A Peroxisome targeting si 99.8 7.9E-17 2.7E-21 154.4 21.9 259 191-454 22-312 (327)
27 1xi4_A Clathrin heavy chain; a 99.8 2.3E-14 8E-19 153.1 42.0 350 51-452 983-1340(1630)
28 4g1t_A Interferon-induced prot 99.7 5.5E-16 1.9E-20 156.9 26.9 381 51-460 49-462 (472)
29 4eqf_A PEX5-related protein; a 99.7 8.1E-17 2.8E-21 157.1 19.0 259 121-386 64-351 (365)
30 3mkr_A Coatomer subunit epsilo 99.7 3E-16 1E-20 147.3 21.9 246 197-457 6-264 (291)
31 2ooe_A Cleavage stimulation fa 99.7 3.5E-14 1.2E-18 145.8 36.7 396 20-426 12-495 (530)
32 1xi4_A Clathrin heavy chain; a 99.7 7.4E-14 2.5E-18 149.3 38.4 374 25-449 989-1376(1630)
33 3cv0_A Peroxisome targeting si 99.7 1.3E-15 4.4E-20 145.9 22.2 274 86-388 20-312 (327)
34 3spa_A Mtrpol, DNA-directed RN 99.7 3.1E-17 1.1E-21 169.7 7.6 151 155-305 123-286 (1134)
35 3uq3_A Heat shock protein STI1 99.7 5.9E-15 2E-19 135.9 21.8 218 227-457 7-236 (258)
36 3spa_A Mtrpol, DNA-directed RN 99.7 1.1E-16 3.7E-21 165.7 9.2 127 257-384 124-258 (1134)
37 3uq3_A Heat shock protein STI1 99.6 8.5E-15 2.9E-19 134.9 18.5 233 192-435 7-254 (258)
38 2pl2_A Hypothetical conserved 99.6 1.3E-14 4.3E-19 130.1 18.7 195 257-455 2-212 (217)
39 3e4b_A ALGK; tetratricopeptide 99.6 2.5E-14 8.4E-19 143.3 21.2 378 59-456 9-420 (452)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.9E-14 1E-18 132.7 20.4 241 202-451 17-269 (275)
41 3u4t_A TPR repeat-containing p 99.6 4.1E-14 1.4E-18 131.6 18.8 243 162-442 6-269 (272)
42 1ouv_A Conserved hypothetical 99.6 1E-12 3.4E-17 122.3 26.3 219 229-459 10-253 (273)
43 3e4b_A ALGK; tetratricopeptide 99.6 2.6E-13 8.8E-18 135.9 22.6 345 92-460 8-390 (452)
44 1ouv_A Conserved hypothetical 99.6 9.4E-13 3.2E-17 122.5 24.9 226 189-427 5-255 (273)
45 2ho1_A Type 4 fimbrial biogene 99.6 9.3E-13 3.2E-17 120.8 23.4 134 293-428 107-243 (252)
46 2pl2_A Hypothetical conserved 99.6 4.6E-13 1.6E-17 119.8 20.6 193 190-388 5-211 (217)
47 2h6f_A Protein farnesyltransfe 99.5 7.9E-13 2.7E-17 128.3 22.8 243 193-440 100-365 (382)
48 4a1s_A PINS, partner of inscut 99.5 9.7E-14 3.3E-18 137.5 16.9 230 228-457 89-372 (411)
49 2ho1_A Type 4 fimbrial biogene 99.5 7.9E-13 2.7E-17 121.3 21.6 197 260-458 37-239 (252)
50 2q7f_A YRRB protein; TPR, prot 99.5 1.9E-13 6.4E-18 124.6 17.2 145 290-437 90-236 (243)
51 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.2E-13 1.8E-17 124.2 20.3 241 98-349 16-269 (275)
52 2vq2_A PILW, putative fimbrial 99.5 1.3E-12 4.4E-17 117.3 22.1 195 260-456 8-210 (225)
53 3u4t_A TPR repeat-containing p 99.5 2.7E-12 9.1E-17 119.2 24.5 228 122-354 3-249 (272)
54 2vq2_A PILW, putative fimbrial 99.5 2.5E-12 8.6E-17 115.4 23.6 204 226-432 9-220 (225)
55 4g1t_A Interferon-induced prot 99.5 8.6E-12 2.9E-16 126.0 29.9 319 87-427 51-405 (472)
56 2q7f_A YRRB protein; TPR, prot 99.5 2.3E-13 7.9E-18 124.0 16.6 197 259-458 22-223 (243)
57 3sf4_A G-protein-signaling mod 99.5 3.7E-13 1.3E-17 132.9 19.0 260 196-456 15-335 (406)
58 3ro2_A PINS homolog, G-protein 99.5 4.6E-13 1.6E-17 128.3 18.0 260 197-457 12-332 (338)
59 3sf4_A G-protein-signaling mod 99.5 1.6E-13 5.4E-18 135.6 14.2 288 125-445 12-364 (406)
60 2h6f_A Protein farnesyltransfe 99.5 1.4E-12 4.7E-17 126.6 20.0 228 225-457 97-348 (382)
61 3vtx_A MAMA; tetratricopeptide 99.5 3.3E-12 1.1E-16 110.9 19.5 164 290-457 4-170 (184)
62 4a1s_A PINS, partner of inscut 99.5 5.6E-13 1.9E-17 132.0 16.2 233 193-425 89-374 (411)
63 4abn_A Tetratricopeptide repea 99.5 5.7E-13 1.9E-17 134.2 15.2 192 259-454 101-318 (474)
64 3ro2_A PINS homolog, G-protein 99.4 1.7E-12 5.7E-17 124.4 16.3 264 130-426 13-335 (338)
65 3ulq_A Response regulator aspa 99.4 1.3E-12 4.3E-17 128.2 15.2 162 293-455 186-366 (383)
66 3ulq_A Response regulator aspa 99.4 1.5E-11 5.1E-16 120.6 20.6 229 196-424 109-369 (383)
67 4e6h_A MRNA 3'-END-processing 99.4 8.7E-10 3E-14 114.2 34.5 213 210-427 329-574 (679)
68 3nf1_A KLC 1, kinesin light ch 99.4 1.1E-12 3.7E-17 124.4 11.2 241 191-456 28-306 (311)
69 3vtx_A MAMA; tetratricopeptide 99.4 8.8E-12 3E-16 108.2 16.1 167 259-428 4-175 (184)
70 2ond_A Cleavage stimulation fa 99.4 1.6E-10 5.4E-15 109.4 25.6 218 207-428 33-275 (308)
71 3nf1_A KLC 1, kinesin light ch 99.4 2.6E-12 8.9E-17 121.7 11.4 249 156-426 24-310 (311)
72 1hz4_A MALT regulatory protein 99.4 6.7E-10 2.3E-14 108.3 28.7 259 198-456 22-321 (373)
73 2ond_A Cleavage stimulation fa 99.3 9E-11 3.1E-15 111.1 21.1 212 242-458 33-271 (308)
74 4e6h_A MRNA 3'-END-processing 99.3 1.5E-09 5.1E-14 112.4 31.6 412 41-458 55-571 (679)
75 3q15_A PSP28, response regulat 99.3 3.4E-11 1.2E-15 117.7 18.2 162 293-455 184-363 (378)
76 3as5_A MAMA; tetratricopeptide 99.3 6.2E-11 2.1E-15 102.5 16.9 161 261-456 9-172 (186)
77 4gyw_A UDP-N-acetylglucosamine 99.3 4.3E-11 1.5E-15 125.4 18.4 163 290-456 8-173 (723)
78 3as5_A MAMA; tetratricopeptide 99.3 2.3E-10 7.8E-15 98.9 19.4 168 225-428 8-178 (186)
79 3q15_A PSP28, response regulat 99.3 1.5E-09 5.2E-14 106.0 26.7 227 196-423 107-365 (378)
80 4abn_A Tetratricopeptide repea 99.3 5.3E-11 1.8E-15 119.8 16.5 211 139-388 83-318 (474)
81 4i17_A Hypothetical protein; T 99.2 2.2E-10 7.4E-15 103.2 17.0 188 259-457 6-209 (228)
82 4i17_A Hypothetical protein; T 99.2 5.3E-10 1.8E-14 100.6 18.9 203 223-437 5-223 (228)
83 1hz4_A MALT regulatory protein 99.2 5.7E-09 1.9E-13 101.6 25.8 225 92-318 19-280 (373)
84 1qqe_A Vesicular transport pro 99.2 5.5E-10 1.9E-14 104.7 16.6 187 269-455 46-267 (292)
85 3edt_B KLC 2, kinesin light ch 99.1 2.9E-10 9.8E-15 105.7 12.2 154 201-354 12-197 (283)
86 1qqe_A Vesicular transport pro 99.1 1.7E-09 5.6E-14 101.5 17.3 243 142-427 3-273 (292)
87 3edt_B KLC 2, kinesin light ch 99.1 2.6E-09 8.9E-14 99.2 17.0 149 171-319 13-197 (283)
88 4gyw_A UDP-N-acetylglucosamine 99.1 1.6E-09 5.5E-14 113.6 17.0 162 259-424 8-175 (723)
89 3qky_A Outer membrane assembly 99.1 9.7E-09 3.3E-13 94.4 20.3 204 260-503 15-247 (261)
90 3mv2_B Coatomer subunit epsilo 99.1 1.4E-08 4.8E-13 93.5 20.6 239 169-429 23-288 (310)
91 2fo7_A Synthetic consensus TPR 99.0 4.4E-09 1.5E-13 85.3 14.1 124 331-456 6-131 (136)
92 3mv2_B Coatomer subunit epsilo 99.0 1.3E-08 4.4E-13 93.7 18.4 240 197-458 20-283 (310)
93 3qky_A Outer membrane assembly 99.0 4.2E-09 1.4E-13 96.9 14.5 203 223-446 13-250 (261)
94 2fo7_A Synthetic consensus TPR 99.0 1.7E-08 5.8E-13 81.7 15.6 131 293-426 3-135 (136)
95 2yhc_A BAMD, UPF0169 lipoprote 99.0 4.2E-08 1.4E-12 87.9 19.1 182 262-460 6-216 (225)
96 3qou_A Protein YBBN; thioredox 98.9 2.1E-08 7.1E-13 93.6 16.6 174 277-455 103-282 (287)
97 2pzi_A Probable serine/threoni 98.9 3.3E-09 1.1E-13 111.6 12.3 169 271-443 402-583 (681)
98 3rjv_A Putative SEL1 repeat pr 98.9 6.3E-08 2.2E-12 85.8 18.3 173 279-460 5-200 (212)
99 4ga2_A E3 SUMO-protein ligase 98.9 1.3E-09 4.6E-14 90.7 6.1 139 301-443 7-149 (150)
100 2uy1_A Cleavage stimulation fa 98.9 1.5E-06 5.1E-11 87.3 27.8 351 54-421 16-411 (493)
101 2vsy_A XCC0866; transferase, g 98.9 1.2E-07 4.3E-12 97.8 20.4 159 274-435 3-169 (568)
102 2ifu_A Gamma-SNAP; membrane fu 98.9 7E-08 2.4E-12 91.0 16.8 219 203-449 4-253 (307)
103 2vsy_A XCC0866; transferase, g 98.8 3E-08 1E-12 102.4 15.1 151 304-458 2-158 (568)
104 3urz_A Uncharacterized protein 98.8 6.3E-08 2.2E-12 85.5 14.8 129 294-427 57-190 (208)
105 2r5s_A Uncharacterized protein 98.8 3.1E-08 1.1E-12 84.9 12.3 154 298-456 13-172 (176)
106 2pzi_A Probable serine/threoni 98.8 9.3E-08 3.2E-12 100.6 18.3 188 236-429 402-608 (681)
107 3gyz_A Chaperone protein IPGC; 98.8 6E-08 2E-12 80.3 12.8 98 361-458 35-134 (151)
108 4ga2_A E3 SUMO-protein ligase 98.8 1E-08 3.5E-13 85.3 8.1 121 333-456 4-128 (150)
109 3urz_A Uncharacterized protein 98.8 1.6E-07 5.5E-12 82.9 15.9 129 195-327 59-191 (208)
110 2r5s_A Uncharacterized protein 98.8 7.6E-08 2.6E-12 82.4 13.0 155 264-422 10-172 (176)
111 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.1E-07 3.6E-12 85.2 14.3 186 224-430 3-220 (225)
112 3rjv_A Putative SEL1 repeat pr 98.8 2.6E-07 9E-12 81.7 16.7 174 244-425 5-199 (212)
113 3dra_A Protein farnesyltransfe 98.8 1.9E-06 6.4E-11 80.1 23.0 215 207-455 50-285 (306)
114 2ifu_A Gamma-SNAP; membrane fu 98.8 2.3E-07 7.9E-12 87.4 17.0 94 138-253 5-104 (307)
115 2vgx_A Chaperone SYCD; alterna 98.7 2.8E-08 9.5E-13 82.4 8.9 97 361-457 20-118 (148)
116 3dra_A Protein farnesyltransfe 98.7 6.7E-06 2.3E-10 76.4 25.8 171 168-341 42-235 (306)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.7E-07 9.2E-12 81.6 15.7 126 329-459 9-152 (213)
118 2qfc_A PLCR protein; TPR, HTH, 98.7 3.5E-07 1.2E-11 85.6 17.0 164 293-456 77-265 (293)
119 3qou_A Protein YBBN; thioredox 98.7 4.9E-07 1.7E-11 84.2 17.6 162 223-386 115-279 (287)
120 4gco_A Protein STI-1; structur 98.7 1E-07 3.5E-12 76.4 11.1 107 328-436 15-123 (126)
121 3u3w_A Transcriptional activat 98.7 9.9E-07 3.4E-11 82.4 19.2 161 296-456 80-265 (293)
122 1a17_A Serine/threonine protei 98.7 2.6E-07 9.1E-12 77.8 13.3 127 328-456 15-145 (166)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.7 6.8E-07 2.3E-11 79.0 16.2 144 264-427 10-154 (213)
124 4gco_A Protein STI-1; structur 98.7 1.8E-07 6.1E-12 75.0 10.9 100 358-457 8-110 (126)
125 2uy1_A Cleavage stimulation fa 98.7 1.6E-06 5.3E-11 87.2 20.0 356 70-456 8-412 (493)
126 3u3w_A Transcriptional activat 98.6 1.7E-06 5.7E-11 80.9 18.6 124 231-354 121-265 (293)
127 2xcb_A PCRH, regulatory protei 98.6 3E-07 1E-11 75.5 11.7 97 361-457 17-115 (142)
128 1na0_A Designed protein CTPR3; 98.6 4.5E-07 1.6E-11 72.0 12.6 115 326-442 9-125 (125)
129 2lni_A Stress-induced-phosphop 98.6 4.1E-07 1.4E-11 73.3 12.4 116 326-443 16-133 (133)
130 2vyi_A SGTA protein; chaperone 98.6 3.8E-07 1.3E-11 73.1 11.7 116 327-444 13-130 (131)
131 2c2l_A CHIP, carboxy terminus 98.6 1.3E-07 4.3E-12 87.9 9.4 189 261-456 5-198 (281)
132 2qfc_A PLCR protein; TPR, HTH, 98.6 3E-06 1E-10 79.1 18.2 161 263-423 78-266 (293)
133 1p5q_A FKBP52, FK506-binding p 98.5 6.2E-07 2.1E-11 85.6 13.0 94 362-455 196-292 (336)
134 4f3v_A ESX-1 secretion system 98.5 9.2E-07 3.1E-11 80.3 12.9 134 296-434 107-247 (282)
135 3upv_A Heat shock protein STI1 98.5 5.6E-07 1.9E-11 72.0 10.1 96 362-457 4-101 (126)
136 2e2e_A Formate-dependent nitri 98.5 2.7E-07 9.1E-12 79.0 8.4 118 338-457 22-144 (177)
137 2kck_A TPR repeat; tetratricop 98.5 6.8E-07 2.3E-11 69.4 10.1 99 361-459 5-108 (112)
138 3sz7_A HSC70 cochaperone (SGT) 98.5 2.7E-06 9.3E-11 71.6 13.8 97 361-457 10-108 (164)
139 4f3v_A ESX-1 secretion system 98.5 2.8E-06 9.7E-11 77.1 14.3 126 329-457 105-237 (282)
140 3gw4_A Uncharacterized protein 98.5 1.4E-06 4.7E-11 76.2 12.0 24 228-251 69-92 (203)
141 3gw4_A Uncharacterized protein 98.5 1.5E-06 5.2E-11 75.9 12.3 132 291-422 26-175 (203)
142 1hxi_A PEX5, peroxisome target 98.4 6.5E-07 2.2E-11 71.1 8.7 94 364-457 19-114 (121)
143 2vgx_A Chaperone SYCD; alterna 98.4 8.9E-07 3.1E-11 73.2 9.6 102 327-430 22-125 (148)
144 3q49_B STIP1 homology and U bo 98.4 1.7E-06 6E-11 70.1 11.3 98 360-457 7-106 (137)
145 2fbn_A 70 kDa peptidylprolyl i 98.4 1.4E-06 4.9E-11 76.0 11.5 170 268-458 12-187 (198)
146 3q7a_A Farnesyltransferase alp 98.4 0.00011 3.9E-09 68.9 24.7 173 200-377 64-257 (349)
147 1elw_A TPR1-domain of HOP; HOP 98.4 3.3E-06 1.1E-10 66.1 12.1 107 328-436 6-114 (118)
148 2lni_A Stress-induced-phosphop 98.4 2.1E-06 7.3E-11 68.9 10.8 99 359-457 13-113 (133)
149 1na0_A Designed protein CTPR3; 98.4 2.5E-06 8.5E-11 67.5 10.9 96 362-457 9-106 (125)
150 4gcn_A Protein STI-1; structur 98.4 1.5E-06 5.1E-11 69.6 9.5 94 363-456 9-111 (127)
151 1a17_A Serine/threonine protei 98.4 6E-06 2.1E-10 69.3 13.7 128 292-422 14-145 (166)
152 1elw_A TPR1-domain of HOP; HOP 98.4 2.5E-06 8.5E-11 66.8 10.5 98 361-458 3-102 (118)
153 2e2e_A Formate-dependent nitri 98.4 2.4E-06 8.1E-11 73.0 11.1 126 302-430 21-151 (177)
154 3gyz_A Chaperone protein IPGC; 98.4 1.7E-06 5.7E-11 71.5 9.5 98 328-427 38-137 (151)
155 2dba_A Smooth muscle cell asso 98.4 4E-06 1.4E-10 68.8 11.8 96 361-456 27-127 (148)
156 3sz7_A HSC70 cochaperone (SGT) 98.4 4.6E-06 1.6E-10 70.2 12.2 108 326-435 11-120 (164)
157 2xcb_A PCRH, regulatory protei 98.4 2.6E-06 8.7E-11 69.8 10.3 104 327-432 19-124 (142)
158 3q7a_A Farnesyltransferase alp 98.3 0.00043 1.5E-08 65.0 26.5 174 95-275 62-257 (349)
159 3upv_A Heat shock protein STI1 98.3 3.8E-06 1.3E-10 67.1 11.0 109 327-437 5-121 (126)
160 2c2l_A CHIP, carboxy terminus 98.3 1.3E-06 4.6E-11 80.9 9.4 47 339-388 148-196 (281)
161 2dba_A Smooth muscle cell asso 98.3 8.3E-06 2.9E-10 66.9 13.0 111 325-438 27-143 (148)
162 2vyi_A SGTA protein; chaperone 98.3 5.5E-06 1.9E-10 66.1 10.5 97 361-457 11-109 (131)
163 1elr_A TPR2A-domain of HOP; HO 98.3 7.9E-06 2.7E-10 65.2 11.3 93 364-456 6-107 (131)
164 3q49_B STIP1 homology and U bo 98.3 6.3E-06 2.2E-10 66.7 10.6 100 325-426 8-109 (137)
165 3dss_A Geranylgeranyl transfer 98.3 0.00027 9.2E-09 66.1 22.7 192 241-437 90-318 (331)
166 2hr2_A Hypothetical protein; a 98.2 3.9E-06 1.3E-10 68.7 8.8 91 366-456 15-130 (159)
167 3rkv_A Putative peptidylprolyl 98.2 8.4E-06 2.9E-10 68.4 10.8 64 394-457 63-126 (162)
168 1wao_1 Serine/threonine protei 98.2 1.3E-05 4.5E-10 80.2 14.0 84 270-354 16-102 (477)
169 1p5q_A FKBP52, FK506-binding p 98.2 1.6E-05 5.4E-10 75.8 13.7 131 290-422 146-293 (336)
170 4b4t_Q 26S proteasome regulato 98.2 1.3E-05 4.5E-10 79.3 13.6 161 294-454 58-242 (434)
171 2xev_A YBGF; tetratricopeptide 98.2 4.1E-06 1.4E-10 67.0 8.1 91 367-457 7-105 (129)
172 2kck_A TPR repeat; tetratricop 98.2 9.7E-06 3.3E-10 62.6 10.0 99 328-428 8-111 (112)
173 4b4t_Q 26S proteasome regulato 98.2 7.3E-05 2.5E-09 73.9 18.9 191 197-387 11-241 (434)
174 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.7E-05 5.7E-10 79.1 13.9 144 290-455 267-413 (457)
175 2fbn_A 70 kDa peptidylprolyl i 98.2 5E-06 1.7E-10 72.5 8.7 148 231-382 10-176 (198)
176 1wao_1 Serine/threonine protei 98.2 3.7E-06 1.3E-10 84.2 8.7 85 300-388 15-100 (477)
177 3k9i_A BH0479 protein; putativ 98.1 1.7E-06 5.9E-11 68.1 4.7 82 375-456 3-89 (117)
178 1elr_A TPR2A-domain of HOP; HO 98.1 1.8E-05 6.2E-10 63.0 10.9 106 329-437 7-121 (131)
179 3ro3_A PINS homolog, G-protein 98.1 1.6E-05 5.5E-10 66.1 10.9 93 364-456 51-157 (164)
180 4gcn_A Protein STI-1; structur 98.1 4.4E-05 1.5E-09 60.9 12.6 26 294-319 86-111 (127)
181 1hxi_A PEX5, peroxisome target 98.1 1.5E-05 5E-10 63.1 9.4 96 330-427 21-118 (121)
182 2xev_A YBGF; tetratricopeptide 98.1 3.1E-05 1.1E-09 61.7 11.5 99 332-432 8-114 (129)
183 3n71_A Histone lysine methyltr 98.1 1.8E-05 6.2E-10 78.8 12.0 123 335-457 318-464 (490)
184 3dss_A Geranylgeranyl transfer 98.1 0.00091 3.1E-08 62.5 21.8 180 276-458 90-305 (331)
185 2if4_A ATFKBP42; FKBP-like, al 98.0 7.2E-06 2.5E-10 78.2 7.7 147 291-457 179-328 (338)
186 3ro3_A PINS homolog, G-protein 98.0 2E-05 7E-10 65.4 9.7 131 294-424 12-159 (164)
187 1ihg_A Cyclophilin 40; ppiase 98.0 2.4E-05 8.3E-10 75.4 11.0 139 291-450 223-363 (370)
188 3k9i_A BH0479 protein; putativ 98.0 5.4E-06 1.8E-10 65.2 4.9 91 339-430 3-97 (117)
189 3rkv_A Putative peptidylprolyl 98.0 1.7E-05 5.9E-10 66.4 8.3 68 361-428 62-131 (162)
190 2if4_A ATFKBP42; FKBP-like, al 98.0 2.1E-05 7.3E-10 74.9 9.6 152 260-428 179-333 (338)
191 2l6j_A TPR repeat-containing p 97.9 2.4E-05 8.2E-10 60.4 6.7 92 361-452 3-102 (111)
192 3ma5_A Tetratricopeptide repea 97.9 5.5E-05 1.9E-09 57.3 8.4 66 392-457 5-70 (100)
193 2hr2_A Hypothetical protein; a 97.9 4.5E-05 1.5E-09 62.4 8.2 73 364-436 59-144 (159)
194 1dce_A Protein (RAB geranylger 97.8 0.00065 2.2E-08 69.3 18.2 168 276-446 45-244 (567)
195 1ihg_A Cyclophilin 40; ppiase 97.8 9.7E-05 3.3E-09 71.2 11.4 113 326-457 223-336 (370)
196 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00021 7.1E-09 71.1 13.7 95 364-458 270-381 (457)
197 1na3_A Designed protein CTPR2; 97.8 7.8E-05 2.7E-09 55.0 8.2 81 362-442 9-91 (91)
198 2kat_A Uncharacterized protein 97.8 0.00011 3.8E-09 57.2 8.8 78 380-457 3-82 (115)
199 1klx_A Cysteine rich protein B 97.6 0.00054 1.8E-08 55.4 11.1 111 341-459 10-128 (138)
200 1zu2_A Mitochondrial import re 97.6 5.2E-05 1.8E-09 61.9 4.1 85 374-458 14-121 (158)
201 3qwp_A SET and MYND domain-con 97.5 0.00043 1.5E-08 67.8 11.2 116 369-502 294-427 (429)
202 3n71_A Histone lysine methyltr 97.5 0.00036 1.2E-08 69.4 10.8 123 300-422 318-463 (490)
203 3bee_A Putative YFRE protein; 97.5 0.0004 1.4E-08 51.5 8.3 70 391-460 3-75 (93)
204 2l6j_A TPR repeat-containing p 97.5 0.00029 9.9E-09 54.1 7.5 66 393-458 3-68 (111)
205 1klx_A Cysteine rich protein B 97.5 0.0018 6.2E-08 52.2 12.1 112 305-425 9-128 (138)
206 2kat_A Uncharacterized protein 97.4 0.00027 9.4E-09 54.9 6.7 81 344-426 3-85 (115)
207 3qww_A SET and MYND domain-con 97.3 0.0005 1.7E-08 67.2 8.7 83 374-456 310-410 (433)
208 1na3_A Designed protein CTPR2; 97.3 0.00063 2.2E-08 49.9 7.3 65 393-457 8-72 (91)
209 1zu2_A Mitochondrial import re 97.3 0.00014 4.9E-09 59.3 3.7 88 339-428 15-125 (158)
210 1pc2_A Mitochondria fission pr 97.3 0.0018 6.1E-08 52.2 9.6 66 391-456 29-99 (152)
211 1dce_A Protein (RAB geranylger 97.3 0.0052 1.8E-07 62.6 15.4 149 304-456 42-220 (567)
212 3qww_A SET and MYND domain-con 97.1 0.0009 3.1E-08 65.4 7.7 93 338-430 310-423 (433)
213 3qwp_A SET and MYND domain-con 97.0 0.0028 9.6E-08 62.0 10.5 99 333-431 294-413 (429)
214 3ma5_A Tetratricopeptide repea 97.0 0.0015 5.2E-08 49.1 6.7 65 361-425 6-72 (100)
215 2kc7_A BFR218_protein; tetratr 96.9 0.0017 5.7E-08 48.6 6.1 63 369-431 7-72 (99)
216 2kc7_A BFR218_protein; tetratr 96.9 0.0041 1.4E-07 46.4 8.2 86 332-427 6-94 (99)
217 3ly7_A Transcriptional activat 96.8 0.017 5.8E-07 54.2 12.7 136 290-427 193-343 (372)
218 3lvg_A Clathrin heavy chain 1; 96.7 0.00014 4.6E-09 69.6 -2.2 239 51-312 52-325 (624)
219 3mkq_A Coatomer beta'-subunit; 96.6 0.16 5.4E-06 54.3 21.4 153 96-285 608-761 (814)
220 3mkq_A Coatomer beta'-subunit; 96.6 0.044 1.5E-06 58.8 16.9 153 200-388 609-762 (814)
221 1wy6_A Hypothetical protein ST 96.6 0.17 5.9E-06 39.2 15.3 140 302-460 18-157 (172)
222 3bee_A Putative YFRE protein; 96.4 0.029 9.9E-07 41.3 9.5 78 359-437 3-85 (93)
223 3u64_A Protein TP_0956; tetrat 96.3 0.013 4.6E-07 52.6 8.4 86 378-463 179-275 (301)
224 2v5f_A Prolyl 4-hydroxylase su 96.2 0.02 7E-07 43.2 8.2 73 361-433 4-85 (104)
225 1qsa_A Protein (soluble lytic 96.2 1.4 4.7E-05 44.9 25.1 114 305-422 228-347 (618)
226 1nzn_A CGI-135 protein, fissio 96.1 0.038 1.3E-06 42.8 9.1 65 392-456 33-102 (126)
227 1pc2_A Mitochondria fission pr 96.0 0.023 7.8E-07 45.8 7.4 85 342-428 14-105 (152)
228 3mkq_B Coatomer subunit alpha; 95.9 0.27 9.3E-06 40.6 13.9 129 268-420 13-141 (177)
229 3ly7_A Transcriptional activat 95.8 0.14 4.9E-06 48.0 13.2 133 119-254 191-339 (372)
230 3mkq_B Coatomer subunit alpha; 95.6 0.69 2.4E-05 38.2 15.1 102 167-285 13-114 (177)
231 2v5f_A Prolyl 4-hydroxylase su 95.3 0.056 1.9E-06 40.7 7.4 65 393-457 4-75 (104)
232 1y8m_A FIS1; mitochondria, unk 95.2 0.61 2.1E-05 36.7 12.8 66 391-456 36-105 (144)
233 1wy6_A Hypothetical protein ST 95.2 0.84 2.9E-05 35.4 13.3 84 172-257 74-157 (172)
234 3u64_A Protein TP_0956; tetrat 94.6 2 7E-05 38.6 16.2 114 272-388 133-266 (301)
235 2wpv_A GET4, UPF0363 protein Y 94.3 3.1 0.00011 38.0 17.9 170 160-355 34-217 (312)
236 1nzn_A CGI-135 protein, fissio 94.3 0.34 1.2E-05 37.4 9.1 89 340-430 15-110 (126)
237 3lvg_A Clathrin heavy chain 1; 93.8 0.0048 1.6E-07 59.3 -2.4 211 159-382 54-324 (624)
238 4gns_B Protein CSD3, chitin bi 93.7 0.42 1.5E-05 49.6 11.5 54 402-455 345-398 (754)
239 3o48_A Mitochondria fission 1 92.9 0.52 1.8E-05 36.6 8.1 65 392-456 38-106 (134)
240 4ady_A RPN2, 26S proteasome re 92.4 11 0.00036 40.3 19.6 91 54-152 146-258 (963)
241 2ff4_A Probable regulatory pro 92.4 0.24 8.2E-06 47.6 7.0 70 397-466 174-248 (388)
242 4h7y_A Dual specificity protei 91.9 0.84 2.9E-05 36.3 8.1 54 408-461 74-127 (161)
243 4b4t_P 26S proteasome regulato 91.8 6.1 0.00021 38.5 16.4 184 204-388 30-244 (445)
244 4h7y_A Dual specificity protei 90.9 1.2 4E-05 35.4 8.1 60 375-434 73-134 (161)
245 3esl_A Checkpoint serine/threo 90.9 5.6 0.00019 33.4 12.7 104 380-509 62-171 (202)
246 4ady_A RPN2, 26S proteasome re 90.0 8.7 0.0003 40.9 16.2 13 70-82 244-256 (963)
247 4fhn_B Nucleoporin NUP120; pro 89.8 4.3 0.00015 45.1 14.7 123 331-459 817-969 (1139)
248 3lpz_A GET4 (YOR164C homolog); 88.8 14 0.00049 33.9 23.3 167 264-456 39-215 (336)
249 4fhn_B Nucleoporin NUP120; pro 87.8 24 0.00082 39.2 18.9 79 329-408 902-985 (1139)
250 1v54_E Cytochrome C oxidase po 87.5 3.7 0.00013 29.9 7.9 62 206-268 26-87 (109)
251 3ffl_A Anaphase-promoting comp 87.4 2 7E-05 34.8 7.3 26 430-455 124-149 (167)
252 1v54_E Cytochrome C oxidase po 87.1 3.2 0.00011 30.3 7.3 63 306-370 25-87 (109)
253 4gns_B Protein CSD3, chitin bi 86.9 1.6 5.4E-05 45.4 8.2 123 92-217 253-398 (754)
254 2uwj_G Type III export protein 86.6 7.4 0.00025 28.2 9.7 87 138-229 20-106 (115)
255 2p58_C Putative type III secre 86.3 7.8 0.00027 28.1 10.3 87 138-229 21-107 (116)
256 2wpv_A GET4, UPF0363 protein Y 86.1 20 0.00069 32.7 23.0 168 263-456 36-216 (312)
257 3txn_A 26S proteasome regulato 86.1 24 0.00081 33.5 17.7 59 296-354 104-167 (394)
258 3lpz_A GET4 (YOR164C homolog); 84.7 24 0.00083 32.4 24.2 191 138-354 10-215 (336)
259 4b4t_P 26S proteasome regulato 84.3 32 0.0011 33.4 20.3 196 173-386 30-262 (445)
260 3ffl_A Anaphase-promoting comp 83.9 5.4 0.00018 32.3 8.2 109 267-389 27-149 (167)
261 1y8m_A FIS1; mitochondria, unk 82.8 16 0.00053 28.8 10.5 70 359-428 36-111 (144)
262 2ff4_A Probable regulatory pro 82.6 9.5 0.00032 36.3 11.1 69 295-364 175-247 (388)
263 3o48_A Mitochondria fission 1 82.3 8.4 0.00029 29.9 8.4 69 360-428 38-112 (134)
264 2y69_E Cytochrome C oxidase su 81.3 7.8 0.00027 30.0 7.7 63 306-370 68-130 (152)
265 4a1g_A Mitotic checkpoint seri 79.0 14 0.0005 29.4 9.0 80 379-461 52-134 (152)
266 2y69_E Cytochrome C oxidase su 79.0 11 0.00039 29.1 7.9 60 208-268 71-130 (152)
267 1zbp_A Hypothetical protein VP 77.3 23 0.00079 31.3 10.6 123 299-432 5-138 (273)
268 2uwj_G Type III export protein 76.9 19 0.00064 26.2 10.2 87 239-330 20-106 (115)
269 2p58_C Putative type III secre 76.0 20 0.00069 26.1 10.4 87 239-330 21-107 (116)
270 1zbp_A Hypothetical protein VP 75.2 5.6 0.00019 35.2 6.2 56 371-426 6-63 (273)
271 2wvi_A Mitotic checkpoint seri 74.3 20 0.0007 29.0 8.8 79 380-461 48-129 (164)
272 3eiq_C Programmed cell death p 74.2 25 0.00084 32.8 10.6 64 264-327 221-289 (358)
273 4b4t_R RPN7, 26S proteasome re 70.2 27 0.00091 33.7 10.5 57 262-318 133-195 (429)
274 1wdy_A 2-5A-dependent ribonucl 66.6 47 0.0016 29.1 11.0 113 59-186 8-129 (285)
275 4b4t_R RPN7, 26S proteasome re 64.0 18 0.00061 35.0 7.8 95 328-422 133-236 (429)
276 2zu6_B Programmed cell death p 61.6 94 0.0032 28.2 12.0 64 397-460 169-234 (307)
277 4aez_C MAD3, mitotic spindle c 58.5 25 0.00087 30.0 6.7 51 411-461 131-183 (223)
278 2d2s_A Exocyst complex compone 56.4 57 0.002 28.3 8.9 87 93-184 24-116 (235)
279 3txn_A 26S proteasome regulato 56.4 1.4E+02 0.0046 28.3 25.5 281 163-460 23-346 (394)
280 2nsz_A Programmed cell death p 55.7 48 0.0016 25.5 7.5 63 264-326 11-78 (129)
281 4g8k_A 2-5A-dependent ribonucl 53.8 88 0.003 28.5 10.6 60 19-84 21-84 (337)
282 4b4t_S RPN3, 26S proteasome re 51.7 1.6E+02 0.0053 29.0 11.8 61 260-320 231-299 (523)
283 3mv2_A Coatomer subunit alpha; 51.0 1.4E+02 0.0049 27.1 10.7 126 301-458 124-257 (325)
284 2qx5_A Nucleoporin NIC96; mRNA 51.0 82 0.0028 32.2 10.2 42 92-134 157-198 (661)
285 3ltm_A Alpha-REP4; protein eng 50.8 1.1E+02 0.0037 25.5 19.1 17 158-174 32-48 (211)
286 1wdy_A 2-5A-dependent ribonucl 49.8 1.1E+02 0.0037 26.6 10.3 169 40-224 20-213 (285)
287 2pk8_A Uncharacterized protein 49.6 10 0.00035 26.8 2.3 28 485-512 13-40 (103)
288 3kea_A K1L; tropism, ANK repea 49.6 95 0.0033 27.5 9.8 180 270-463 38-223 (285)
289 3esl_A Checkpoint serine/threo 49.4 1.2E+02 0.004 25.5 9.2 53 206-258 95-148 (202)
290 2qx5_A Nucleoporin NIC96; mRNA 47.8 2.2E+02 0.0077 29.0 12.8 78 130-216 302-382 (661)
291 1k1a_A B-cell lymphoma 3-encod 47.6 1.1E+02 0.0036 26.0 9.6 83 96-185 15-102 (241)
292 1qsa_A Protein (soluble lytic 47.6 2.4E+02 0.0082 28.6 38.0 411 23-462 42-484 (618)
293 2ion_A PDCD4, programmed cell 47.4 43 0.0015 26.7 6.1 63 264-326 13-80 (152)
294 4b4t_S RPN3, 26S proteasome re 46.4 65 0.0022 31.7 8.3 62 327-388 232-296 (523)
295 3ltj_A Alpharep-4; protein eng 46.1 1.2E+02 0.0042 24.8 16.7 17 224-240 151-167 (201)
296 3ltm_A Alpha-REP4; protein eng 44.0 1.4E+02 0.0047 24.8 20.0 9 105-113 19-27 (211)
297 2r9g_A AAA ATPase, central reg 42.5 1.5E+02 0.0051 24.8 8.7 64 194-258 15-86 (204)
298 3bqo_A Telomeric repeat-bindin 40.7 1.4E+02 0.0047 24.9 8.0 60 378-437 94-160 (211)
299 3eu9_A Huntingtin-interacting 40.4 1.1E+02 0.0038 25.7 8.6 19 166-184 113-131 (240)
300 2nsz_A Programmed cell death p 40.2 41 0.0014 25.9 4.8 22 92-113 12-33 (129)
301 1n11_A Ankyrin; clathrin, BAND 37.5 2.5E+02 0.0087 26.4 11.4 105 70-185 25-136 (437)
302 3hra_A Ankyrin repeat family p 36.1 99 0.0034 25.2 7.3 14 70-83 16-29 (201)
303 3kea_A K1L; tropism, ANK repea 35.9 1.1E+02 0.0037 27.2 7.8 13 70-82 42-54 (285)
304 3i5p_A Nucleoporin NUP170; hel 35.0 3.4E+02 0.012 26.7 11.8 69 391-459 175-248 (525)
305 2r9g_A AAA ATPase, central reg 34.5 2E+02 0.0069 24.0 8.9 69 87-156 11-85 (204)
306 3kae_A CDC27, possible protein 34.3 1.9E+02 0.0064 23.6 8.6 81 168-250 42-139 (242)
307 2ion_A PDCD4, programmed cell 33.8 56 0.0019 26.0 4.8 23 91-113 13-35 (152)
308 3hra_A Ankyrin repeat family p 33.7 1.8E+02 0.0061 23.6 8.5 18 167-184 77-94 (201)
309 2d2s_A Exocyst complex compone 33.2 1.4E+02 0.0047 25.8 7.5 21 298-318 25-45 (235)
310 3bge_A Predicted ATPase; struc 32.7 1.7E+02 0.0059 24.3 7.5 45 195-239 9-56 (201)
311 1ug3_A EIF4GI, eukaryotic prot 32.3 2.1E+02 0.0073 26.2 9.3 60 264-323 15-78 (339)
312 2b7e_A PRE-mRNA processing pro 30.9 70 0.0024 20.6 3.8 33 103-135 2-35 (59)
313 3ygs_P Procaspase 9; apoptosis 30.8 47 0.0016 24.0 3.6 65 38-107 24-88 (97)
314 3ctd_A Putative ATPase, AAA fa 30.8 2.2E+02 0.0076 23.9 7.9 67 192-258 34-108 (213)
315 3ltj_A Alpharep-4; protein eng 30.1 2.2E+02 0.0077 23.1 20.9 79 158-240 27-105 (201)
316 2fe3_A Peroxide operon regulat 29.9 1.9E+02 0.0064 22.5 7.4 34 241-274 37-70 (145)
317 3ygs_P Procaspase 9; apoptosis 29.0 66 0.0022 23.2 4.1 37 274-310 51-87 (97)
318 4a1g_A Mitotic checkpoint seri 28.9 2.2E+02 0.0074 22.6 8.8 54 206-259 81-135 (152)
319 4gq2_M Nucleoporin NUP120; bet 28.6 4.1E+02 0.014 28.6 11.9 86 332-423 816-926 (950)
320 4gq2_M Nucleoporin NUP120; bet 27.5 4.2E+02 0.014 28.5 11.8 126 165-305 816-950 (950)
321 1ya0_A SMG-7 transcript varian 27.2 1.4E+02 0.0048 29.3 7.3 71 369-439 159-231 (497)
322 1bpo_A Protein (clathrin); cla 26.9 3.5E+02 0.012 26.2 9.5 106 138-247 343-451 (494)
323 2p1h_A APAF-1, apoptotic prote 26.6 1.7E+02 0.0058 20.6 6.4 62 143-208 24-85 (94)
324 2ijq_A Hypothetical protein; s 26.5 2.4E+02 0.0084 22.5 7.3 53 201-253 43-103 (161)
325 3bge_A Predicted ATPase; struc 25.2 2.4E+02 0.0083 23.4 7.1 42 90-131 7-51 (201)
326 3ctd_A Putative ATPase, AAA fa 24.8 3.1E+02 0.01 23.1 7.7 72 85-156 30-107 (213)
327 2y1l_E Darpin-8.4; hydrolase-i 24.3 2.3E+02 0.0079 22.2 7.3 40 41-83 30-71 (169)
328 3dfg_A Xcrecx, regulatory prot 23.8 2.8E+02 0.0095 22.1 8.5 139 20-182 16-156 (162)
329 1bpo_A Protein (clathrin); cla 23.5 2.4E+02 0.0083 27.2 7.7 77 38-117 346-425 (494)
330 3jxi_A Vanilloid receptor-rela 23.3 76 0.0026 27.5 4.3 53 96-150 11-72 (260)
331 1n00_A Annexin GH1; membrane-b 23.1 4.2E+02 0.015 24.0 12.4 59 89-152 77-135 (321)
332 2fe3_A Peroxide operon regulat 22.6 1.9E+02 0.0064 22.5 6.1 63 315-379 11-73 (145)
333 2wvi_A Mitotic checkpoint seri 22.6 3E+02 0.01 22.1 9.3 54 207-260 77-131 (164)
334 1n11_A Ankyrin; clathrin, BAND 22.5 2.1E+02 0.0073 27.0 7.8 15 107-121 27-41 (437)
335 1dm5_A Annexin XII E105K mutan 22.3 4.3E+02 0.015 23.8 13.6 58 89-151 73-130 (315)
336 4aez_C MAD3, mitotic spindle c 21.2 3.8E+02 0.013 22.8 8.7 54 206-259 130-184 (223)
337 2xig_A Ferric uptake regulatio 21.0 3E+02 0.01 21.5 7.3 38 238-275 39-76 (150)
338 1wgl_A TOLL-interacting protei 20.9 1.1E+02 0.0036 19.7 3.4 22 100-121 36-57 (59)
339 3l6a_A Eukaryotic translation 20.5 4.9E+02 0.017 24.1 9.3 23 366-388 142-164 (364)
340 4ets_A Ferric uptake regulatio 20.2 2.5E+02 0.0084 22.4 6.4 58 217-275 25-84 (162)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-37 Score=326.62 Aligned_cols=426 Identities=10% Similarity=-0.033 Sum_probs=374.6
Q ss_pred CCHHHHHHHHHhccCCchH---HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCC--CCCcccHHHH
Q 036003 19 TNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP--EPDIVLFNTM 93 (558)
Q Consensus 19 p~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l 93 (558)
++...|+.++..+.+.++. ..++..+.+ ..|+..++..++.+|.+. |++++|..+|+++. .++..+|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCT---GDYARAKCLLTKEDLYNRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHT---TCHHHHHHHHHHTCGGGTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHc---CcHHHHHHHHHHHhccccchhHHHHH
Confidence 4667788999988887777 556666664 457888999999999999 99999999999984 5789999999
Q ss_pred HHHHhcCCCchHHHHHHHHhHHC---------------CCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCh
Q 036003 94 ARGYSRSKTPIRAIFLFVELLNS---------------GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158 (558)
Q Consensus 94 i~~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 158 (558)
+.+|.+.|++++|+++|+++... |..++..+|+.++.++.+. |++++|.++|+++.+.+.. +
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~p~-~ 233 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL--SNFDRAKECYKEALMVDAK-C 233 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCch-h
Confidence 99999999999999999854221 2234578999999999999 9999999999999987632 2
Q ss_pred HHHH--------------------------------------HHHHHHHHhCCChHHHHHHHhccCC--CCcchHHHHHH
Q 036003 159 LYVC--------------------------------------TTLINLYAECSDVEAARRIFENISE--PCVVSYNAIIT 198 (558)
Q Consensus 159 ~~~~--------------------------------------~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 198 (558)
...+ +.++..|.+.|++++|.++|+++.+ ++..+|+.++.
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 313 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHH
Confidence 3332 2335567788999999999999988 88999999999
Q ss_pred HHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 036003 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278 (558)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 278 (558)
+|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..+++.++.+|.+.|++++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999998765 4477789999999999999999999999998764 5678899999999999999999
Q ss_pred HHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhh
Q 036003 279 AVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355 (558)
Q Consensus 279 A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 355 (558)
|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.
T Consensus 392 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999875 3478899999999999999999999999999864 347789999999999999999999999999873
Q ss_pred cCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-------PIKST--PILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 356 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
.+.+..+|..++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.++++++.+|+
T Consensus 471 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 471 --FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp --CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred --CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 3457889999999999999999999999987 44676 789999999999999999999999999999999
Q ss_pred CcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 427 HGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 427 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
++.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999874
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-34 Score=302.20 Aligned_cols=408 Identities=11% Similarity=-0.001 Sum_probs=352.4
Q ss_pred CCCHHHHHHHHHhccCCchH---HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCC---------
Q 036003 18 CTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP--------- 85 (558)
Q Consensus 18 ~p~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~--------- 85 (558)
.|+..++..+..++.+.++. ..+++.+. ..+++..+++.++.+|.+. |++++|.++|+++...
T Consensus 114 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~ 188 (597)
T 2xpi_A 114 TGNPNDAFWLAQVYCCTGDYARAKCLLTKED--LYNRSSACRYLAAFCLVKL---YDWQGALNLLGETNPFRKDEKNANK 188 (597)
T ss_dssp HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC--GGGTCHHHHHHHHHHHHHT---TCHHHHHHHHCSSCTTC--------
T ss_pred CCCchHHHHHHHHHHHcCcHHHHHHHHHHHh--ccccchhHHHHHHHHHHHH---hhHHHHHHHHhccCCcccccccccc
Confidence 46778888888888888877 33333332 3478899999999999999 9999999999965433
Q ss_pred ----------CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCc-ccHHHH--------------------------
Q 036003 86 ----------DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDD-YSFPSL-------------------------- 128 (558)
Q Consensus 86 ----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l-------------------------- 128 (558)
++.+|+.++.+|.+.|++++|+++|++|.+.+ |+. ..+..+
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (597)
T 2xpi_A 189 LLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266 (597)
T ss_dssp --CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGG
T ss_pred ccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccc
Confidence 37899999999999999999999999998853 432 222222
Q ss_pred ------------HHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchH
Q 036003 129 ------------LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE---PCVVSY 193 (558)
Q Consensus 129 ------------l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 193 (558)
+..|.+. |++++|.++|+++.+. +++..+++.++.+|.+.|++++|.++|+++.+ .+..+|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~--g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 342 (597)
T 2xpi_A 267 DAAFLRSLYMLKLNKTSHE--DELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVY 342 (597)
T ss_dssp GHHHHHHHHHTTSCTTTTH--HHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTH
T ss_pred hHHHHHHHHHHHHHHHcCc--chHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHH
Confidence 3344456 8999999999998875 58899999999999999999999999999864 577889
Q ss_pred HHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 036003 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273 (558)
Q Consensus 194 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (558)
+.++.+|.+.|++++|.++++++.+.. +.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.
T Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 420 (597)
T 2xpi_A 343 PLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIE 420 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 999999999999999999999998653 5678899999999999999999999999998864 45678999999999999
Q ss_pred CCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 036003 274 GRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350 (558)
Q Consensus 274 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 350 (558)
|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+
T Consensus 421 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 499 (597)
T 2xpi_A 421 GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQ 499 (597)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999998753 378899999999999999999999999999853 3478899999999999999999999999
Q ss_pred Hchhhc---CCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 036003 351 SMRDKY---GIVPG--IKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423 (558)
Q Consensus 351 ~~~~~~---~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 423 (558)
++.+.. +..|+ ..+|..++.+|.+.|++++|.++|+++ .. +.+..+|..+..+|...|++++|.+.|+++++.
T Consensus 500 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 998642 45676 789999999999999999999999997 22 347899999999999999999999999999999
Q ss_pred CCCCcccHHhHHHHHH
Q 036003 424 DDSHGGDYVILSNLCA 439 (558)
Q Consensus 424 ~~~~~~~~~~l~~~~~ 439 (558)
+|.++.++..+..+|.
T Consensus 580 ~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 580 SPNEIMASDLLKRALE 595 (597)
T ss_dssp CTTCHHHHHHHHHTTC
T ss_pred CCCChHHHHHHHHHHh
Confidence 9999999998888774
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=5.8e-27 Score=231.52 Aligned_cols=370 Identities=12% Similarity=0.075 Sum_probs=249.4
Q ss_pred HHhhcCCCCCCHHHHHHHHccCCC--C-CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCc
Q 036003 61 NFCTQNPTTSSMEHAHLLFDRIPE--P-DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137 (558)
Q Consensus 61 ~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 137 (558)
..+.+. |++++|.+.++.+.+ | +...+..+...+.+.|++++|...++...+.. +.+..+|..+...+...
T Consensus 7 ~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~-- 80 (388)
T 1w3b_A 7 HREYQA---GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKER-- 80 (388)
T ss_dssp HHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH--
T ss_pred HHHHHC---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC--
Confidence 344445 777777777766532 3 33455556666677777777777777766542 23556677777777777
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC--CC-cchHHHHHHHHHHCCCccHHHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE--PC-VVSYNAIITAYARSSRPNEALSLFR 214 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~ 214 (558)
|++++|...|+++.+.. +.+...|..+..++.+.|++++|...|+++.+ |+ ...+..+...+...|++++|.+.|+
T Consensus 81 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77777777777777653 33455677777777777777777777776654 33 3445666666777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCH
Q 036003 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS---GKDT 291 (558)
Q Consensus 215 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~ 291 (558)
++.+.. +.+..++..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...|++.. ..+.
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 237 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH
Confidence 776642 3345667777777777777777777777777654 3345566667777777777777777776654 2256
Q ss_pred HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 036003 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371 (558)
Q Consensus 292 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 371 (558)
.+|..+...|.+.|++++|+..|+++.+.+ +.+..++..+...+.+.|++++|...|+++.+. .+.+..++..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHH
Confidence 667777777777777777777777777642 123556777777777777777777777777652 34566677777777
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcC
Q 036003 372 LGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442 (558)
Q Consensus 372 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 442 (558)
+.+.|++++|.+.++++ ...| +..++..+..++.+.|++++|...|+++++..|.++.+|..++..+...|
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 77777777777777776 3333 45667777777777777777777777777777777777777777666554
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.8e-26 Score=228.03 Aligned_cols=354 Identities=13% Similarity=0.073 Sum_probs=308.1
Q ss_pred HHHHHhcCCCchHHHHHHHHhHHCCCCCCcc-cHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 036003 93 MARGYSRSKTPIRAIFLFVELLNSGLLPDDY-SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE 171 (558)
Q Consensus 93 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 171 (558)
+...+.+.|++++|++.++++.+. .|+.. .+..+...+... |++++|...++...+.. +.+..+|..+...|.+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~--~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~ 79 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQC--RRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHH
Confidence 345677899999999999999875 45554 444555556666 99999999999998875 6678899999999999
Q ss_pred CCChHHHHHHHhccCC--C-CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 036003 172 CSDVEAARRIFENISE--P-CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248 (558)
Q Consensus 172 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 248 (558)
.|++++|...|+++.+ | +..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...|
T Consensus 80 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999999999865 4 45579999999999999999999999998863 334556777888899999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-
Q 036003 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP- 324 (558)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p- 324 (558)
+++.+.. +.+..+|..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+. .|
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~ 235 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPN 235 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcC
Confidence 9999875 44578889999999999999999999998863 36778999999999999999999999999884 45
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 036003 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL--PIKSTPILWRTLLS 402 (558)
Q Consensus 325 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~ 402 (558)
+..++..+..++...|++++|.+.|+++.+ ..+.+..+|..+...+.+.|++++|.+.|+++ ..+.+..++..+..
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 568899999999999999999999999986 33445788999999999999999999999998 22457889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 403 SCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 403 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
.+...|++++|.+.++++++..|++..++..++.+|.+.|++++|.+.++++.+.
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999863
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2e-28 Score=246.46 Aligned_cols=197 Identities=12% Similarity=0.142 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHhCCCChH-HHHHHHHHHHHhCCChHHHHHHHhccCC----CCcchHHHHHHHHHHCCC---------cc
Q 036003 142 EGKQLHCFAIKLGLNSNL-YVCTTLINLYAECSDVEAARRIFENISE----PCVVSYNAIITAYARSSR---------PN 207 (558)
Q Consensus 142 ~a~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~---------~~ 207 (558)
.++.+.+.+.+.+....+ .+++.+|++|++.|++++|.++|++|.+ ||..+||+||.+|++.+. .+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344444555554443322 2355556666666666666666665543 555666666666555443 34
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 036003 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS 287 (558)
Q Consensus 208 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 287 (558)
+|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45556666665566666666666666666666666666666666555555555555555555555555555555555553
Q ss_pred ----CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036003 288 ----GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338 (558)
Q Consensus 288 ----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 338 (558)
.||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 234555555555555555555555555555555555555555555554443
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=8e-29 Score=249.30 Aligned_cols=186 Identities=15% Similarity=0.147 Sum_probs=174.9
Q ss_pred ccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcC-------cccHHHHHHHHHHHHHhCCCChHH
Q 036003 88 VLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG-------AEALEEGKQLHCFAIKLGLNSNLY 160 (558)
Q Consensus 88 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-------~~~~~~a~~~~~~~~~~g~~~~~~ 160 (558)
..++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|+..+ .+.+++|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 4588899999999999999999999999999999999999999998652 145899999999999999999999
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhccCC----CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036003 161 VCTTLINLYAECSDVEAARRIFENISE----PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236 (558)
Q Consensus 161 ~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 236 (558)
+|++||.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999974 8999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 036003 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273 (558)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (558)
+.|++++|.+++++|.+.+..|+..+|+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999988764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.7e-23 Score=214.50 Aligned_cols=394 Identities=9% Similarity=-0.031 Sum_probs=313.4
Q ss_pred hhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC--CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHH
Q 036003 53 LNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE--PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130 (558)
Q Consensus 53 ~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 130 (558)
...+..+...+.+. |++++|...|+++.. |+...|..+..++.+.|++++|+..|+++.+.+. .+...+..+..
T Consensus 6 a~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRN---KKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHT---SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---ccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHH
Confidence 34566677788888 999999999998764 7888899999999999999999999999987642 24567888888
Q ss_pred HHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHH----------------------------
Q 036003 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF---------------------------- 182 (558)
Q Consensus 131 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~---------------------------- 182 (558)
++... |++++|...|+.+.+.+ +++......++..+.+......+.+.+
T Consensus 82 ~~~~~--g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 82 ANEGL--GKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CC
T ss_pred HHHHH--hhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 88888 99999999999998876 333333333444333322222221111
Q ss_pred ----------hccCC---------C-CcchHHHHHHHHHH---CCCccHHHHHHHHHHH-----CCCC--------CCHH
Q 036003 183 ----------ENISE---------P-CVVSYNAIITAYAR---SSRPNEALSLFRELQE-----RNLK--------PTDV 226 (558)
Q Consensus 183 ----------~~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~~--------p~~~ 226 (558)
..... | +...+......+.. .|++++|...|+++.+ ..-. .+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 11110 1 13334444444554 8999999999999987 3112 2345
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHH
Q 036003 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYAT 303 (558)
Q Consensus 227 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~ 303 (558)
.+..+...+...|++++|..+++++.+.... ...+..+..+|...|++++|...|+.+.+. +...|..+...|..
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH
Confidence 7778888999999999999999999988644 888888999999999999999999987643 67789999999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 036003 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383 (558)
Q Consensus 304 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 383 (558)
.|++++|...|++..+... .+...+..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|.+
T Consensus 317 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999998532 25678888999999999999999999999873 34467889999999999999999999
Q ss_pred HHHhC----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHH
Q 036003 384 FIDEL----PIKST----PILWRTLLSSCSS---HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452 (558)
Q Consensus 384 ~~~~~----~~~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 452 (558)
.++++ +..++ ...+..+...+.. .|++++|...++++++..|.++.++..++.+|.+.|++++|...++
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99887 22232 4488999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 036003 453 LMKDRG 458 (558)
Q Consensus 453 ~m~~~g 458 (558)
+..+..
T Consensus 474 ~a~~~~ 479 (514)
T 2gw1_A 474 ESADLA 479 (514)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 998743
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.3e-22 Score=207.89 Aligned_cols=394 Identities=11% Similarity=-0.033 Sum_probs=308.0
Q ss_pred HhccCCchH---HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCC
Q 036003 29 PRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKT 102 (558)
Q Consensus 29 ~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 102 (558)
..+...++. ...+..+.+.. |+...+..+..+|.+. |++++|...|+++.+ .+..+|..+...+.+.|+
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 88 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSV---GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGK 88 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHH---hhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhh
Confidence 344444444 66667777665 7899999999999999 999999999998754 356789999999999999
Q ss_pred chHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhC--------------------C-------
Q 036003 103 PIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG--------------------L------- 155 (558)
Q Consensus 103 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g--------------------~------- 155 (558)
+++|+..|+++.+.+. ++......++..+... .....+.+.+..+...+ .
T Consensus 89 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 89 FADAMFDLSVLSLNGD-FNDASIEPMLERNLNK--QAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp HHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHH--HHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CccchHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 9999999999998753 4555555555555443 33333333332111110 0
Q ss_pred -----------------CChHHHHHHHHHHHHh---CCChHHHHHHHhccCC-----C------------CcchHHHHHH
Q 036003 156 -----------------NSNLYVCTTLINLYAE---CSDVEAARRIFENISE-----P------------CVVSYNAIIT 198 (558)
Q Consensus 156 -----------------~~~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~-----~------------~~~~~~~li~ 198 (558)
+.+...+..+...+.. .|++++|...|+++.+ . +..+|..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 1124444444454554 8999999999988654 1 2456888899
Q ss_pred HHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 036003 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278 (558)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 278 (558)
.+...|++++|...|+++.+.. |+...+..+..++...|++++|...++.+.+.. +.+..++..+..+|...|++++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999998864 447788899999999999999999999998764 4467788889999999999999
Q ss_pred HHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhh
Q 036003 279 AVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355 (558)
Q Consensus 279 A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 355 (558)
|...|++.. ..+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++...
T Consensus 323 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999875 3367789999999999999999999999998853 225678888999999999999999999998864
Q ss_pred cCCCCC----hhHHHHHHHHHhh---cCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 356 YGIVPG----IKHYGCMVDLLGR---AGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 356 ~~~~~~----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
..-.++ ...+..+...+.. .|++++|.+.++++ .. +.+..++..+...+...|++++|...|+++++.+|.
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 222222 3488999999999 99999999999987 22 346788899999999999999999999999999998
Q ss_pred CcccHHhH
Q 036003 427 HGGDYVIL 434 (558)
Q Consensus 427 ~~~~~~~l 434 (558)
++..+..+
T Consensus 482 ~~~~~~~~ 489 (514)
T 2gw1_A 482 MEEKLQAI 489 (514)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 87666554
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=5e-22 Score=200.13 Aligned_cols=319 Identities=12% Similarity=0.053 Sum_probs=232.7
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHH
Q 036003 86 DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTL 165 (558)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 165 (558)
+...|..+...+.+.|++++|+.+|+++.+.. +.+...+..+..++... |++++|...++++++.+ +.+..++..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAM--GKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 44567777777777777777777777776642 22456666666777777 77777777777777764 3345666666
Q ss_pred HHHHHhCCChHHHHHHHhccCC--CC-c---chHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036003 166 INLYAECSDVEAARRIFENISE--PC-V---VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG 239 (558)
Q Consensus 166 l~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 239 (558)
..+|.+.|++++|...|+++.+ |+ . ..+..++..+... .+..+...+...|
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcC
Confidence 7777777777777777766654 22 1 3344443331111 1222344466677
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHH
Q 036003 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEE 316 (558)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 316 (558)
++++|..+++++.+.. +.+..++..++.+|.+.|++++|.++|+++.+ .+..+|..++..|...|++++|+..|++
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888888777654 44566777788888888888888888887753 4677888888888888889999988888
Q ss_pred HHHCCCCCC-HHHHHHH------------HHHHHccCChHHHHHHHHHchhhcCCCCC-----hhHHHHHHHHHhhcCCH
Q 036003 317 MMKAQVSPD-EITFLGL------------LYACSHTGLVDEGWNYFYSMRDKYGIVPG-----IKHYGCMVDLLGRAGRL 378 (558)
Q Consensus 317 m~~~g~~p~-~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~ 378 (558)
+.+. .|+ ...+..+ ...+.+.|++++|..+|+++.+. .|+ ...+..+..++.+.|++
T Consensus 237 ~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 237 CLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCH
Confidence 8864 344 3334333 78889999999999999999864 333 45788899999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHH
Q 036003 379 DEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 379 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
++|...++++ ...| +...|..+..+|...|++++|...++++++..|.++.++..+..+
T Consensus 312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999999987 3334 688999999999999999999999999999999998888887744
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=6.8e-22 Score=199.12 Aligned_cols=346 Identities=10% Similarity=-0.001 Sum_probs=229.5
Q ss_pred CCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHH
Q 036003 50 QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFP 126 (558)
Q Consensus 50 ~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 126 (558)
+.+...+..+...|.+. |++++|..+|+++.. .+..+|..+...+.+.|++++|+..|+++.+.+. .+...+.
T Consensus 23 p~~~~~~~~~~~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 98 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAA---GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARL 98 (450)
T ss_dssp CHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHH
Confidence 45678899999999999 999999999998753 4678899999999999999999999999988643 2567888
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHhCCCChH---HHHHHHHHH------------HHhCCChHHHHHHHhccCC---C
Q 036003 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNL---YVCTTLINL------------YAECSDVEAARRIFENISE---P 188 (558)
Q Consensus 127 ~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~ll~~------------~~~~g~~~~A~~~~~~~~~---~ 188 (558)
.+...+... |++++|...|+.+.+.. +.+. ..+..++.. +.+.|++++|...|+++.+ .
T Consensus 99 ~l~~~~~~~--g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 175 (450)
T 2y4t_A 99 QRGHLLLKQ--GKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW 175 (450)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHc--CCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 888999999 99999999999998764 3344 566666444 6666666666666666543 3
Q ss_pred CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 036003 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALID 268 (558)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 268 (558)
+..++..++.+|.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 253 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ 253 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHH
Confidence 45556666666666666666666666665542 3345566666666666666666666666665543 112222222200
Q ss_pred HHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCChH
Q 036003 269 MHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD-----EITFLGLLYACSHTGLVD 343 (558)
Q Consensus 269 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~ 343 (558)
. + ....+..++..+...|++++|+..|+++.+. .|+ ...+..+..++.+.|+++
T Consensus 254 ~----~---------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 254 V----K---------------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp H----H---------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred H----H---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 0 0 0011222366666777777777777777663 343 335666667777777777
Q ss_pred HHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-
Q 036003 344 EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST-PILWRTLLSS------------CSSHN- 408 (558)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~------------~~~~g- 408 (558)
+|...++++... .+.+...|..+..+|...|++++|...|+++ ...|+ ...+..+..+ |...|
T Consensus 313 ~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 313 EAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 777777776642 2335667777777777777777777777766 33443 4444444422 33333
Q ss_pred ----CHHHHHHHHHH-HHccCCCC
Q 036003 409 ----NLGLAKQVIER-IFELDDSH 427 (558)
Q Consensus 409 ----~~~~a~~~~~~-~~~~~~~~ 427 (558)
+.+++.+.+++ .++..|++
T Consensus 391 ~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp STTCCTTHHHHHHHHHHHHSCGGG
T ss_pred CccCCHHHHHHHHHHHHHHhCCCC
Confidence 56777888886 66666654
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=7.7e-21 Score=196.01 Aligned_cols=388 Identities=11% Similarity=0.031 Sum_probs=294.5
Q ss_pred hhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHH
Q 036003 53 LNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129 (558)
Q Consensus 53 ~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 129 (558)
...+..+...+.+. |++++|...|+++.. .+...|..+...|.+.|++++|++.|+++.+.+. .+...+..+.
T Consensus 25 a~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTA---KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHT---TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHH
Confidence 45677778888888 999999999988754 4667888888999999999999999999887542 2556777777
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC----------------------
Q 036003 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE---------------------- 187 (558)
Q Consensus 130 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---------------------- 187 (558)
..+... |++++|...|+ .... .|+.. +..+..+...+....|...++.+..
T Consensus 101 ~~~~~~--g~~~~A~~~~~-~~~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 173 (537)
T 3fp2_A 101 SANESL--GNFTDAMFDLS-VLSL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGI 173 (537)
T ss_dssp HHHHHH--TCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHT
T ss_pred HHHHHc--CCHHHHHHHHH-HHhc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHh
Confidence 888888 89999999886 3322 22211 1123333344444556665555532
Q ss_pred ---------------CCcc---hHHHHHHHHHH--------CCCccHHHHHHHHHHHCCCCCC--------HHHHHHHHH
Q 036003 188 ---------------PCVV---SYNAIITAYAR--------SSRPNEALSLFRELQERNLKPT--------DVTMLSALS 233 (558)
Q Consensus 188 ---------------~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~--------~~~~~~ll~ 233 (558)
.+.. ....+...+.. .|++++|..+|+++.+. .|+ ..++..+..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 174 FDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGI 251 (537)
T ss_dssp SCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHH
Confidence 1111 22222222221 24788999999998875 344 234666777
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHH
Q 036003 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKS 310 (558)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a 310 (558)
.+...|++++|...++.+.+.. |+...+..+...|...|++++|...|+++. ..+..+|..+...+...|++++|
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 8889999999999999999875 447788889999999999999999999875 34678899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--
Q 036003 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-- 388 (558)
Q Consensus 311 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-- 388 (558)
...|++..+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.|+++
T Consensus 330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999853 224578888999999999999999999999874 3456778999999999999999999999986
Q ss_pred --CCC----CCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHH
Q 036003 389 --PIK----STPILWRTLLSSCSSH----------NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452 (558)
Q Consensus 389 --~~~----~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 452 (558)
+.. .....+..+...+... |++++|...++++++..|.++.++..++.+|.+.|++++|.+.|+
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 111 1223455556777777 999999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 036003 453 LMKDRG 458 (558)
Q Consensus 453 ~m~~~g 458 (558)
+..+..
T Consensus 487 ~al~~~ 492 (537)
T 3fp2_A 487 DSAILA 492 (537)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 998754
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=5.9e-20 Score=189.35 Aligned_cols=393 Identities=9% Similarity=-0.006 Sum_probs=295.7
Q ss_pred HHHHHHhccCCchH---HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHH
Q 036003 24 ALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGY 97 (558)
Q Consensus 24 ~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~ 97 (558)
+..+-..+.+.++. ...+....+.. +.++..+..+..+|.+. |++++|.+.|+++.. .+...|..+...+
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYIST---GDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 33333444444444 77777777664 45678999999999999 999999999998754 4677889999999
Q ss_pred hcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhC------CCChHH-----------
Q 036003 98 SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG------LNSNLY----------- 160 (558)
Q Consensus 98 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~----------- 160 (558)
...|++++|+..|+.+ .. .|+.. ...+..+... +...++...++.++... ..|+..
T Consensus 104 ~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~--~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLER--NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C---------------CHHHH--HHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHH--HHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 9999999999999743 22 23322 2223344444 66777888888775431 111111
Q ss_pred -------------------HHHHHHHHHHhC--------CChHHHHHHHhccCC--CC--------cchHHHHHHHHHHC
Q 036003 161 -------------------VCTTLINLYAEC--------SDVEAARRIFENISE--PC--------VVSYNAIITAYARS 203 (558)
Q Consensus 161 -------------------~~~~ll~~~~~~--------g~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~ 203 (558)
....+...+... |++++|..+|+++.+ |+ ..+|..+...+...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhc
Confidence 222333333222 478999999998876 33 22577777889999
Q ss_pred CCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 036003 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVF 283 (558)
Q Consensus 204 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 283 (558)
|++++|...|++..+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...|
T Consensus 257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999885 5668889999999999999999999999999875 446778889999999999999999999
Q ss_pred hccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC
Q 036003 284 DNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP 360 (558)
Q Consensus 284 ~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 360 (558)
+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+...-.+
T Consensus 334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 98753 367789999999999999999999999999853 33467888899999999999999999999876421111
Q ss_pred ----ChhHHHHHHHHHhhc----------CCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 036003 361 ----GIKHYGCMVDLLGRA----------GRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424 (558)
Q Consensus 361 ----~~~~~~~li~~~~~~----------g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 424 (558)
....+..+...+.+. |++++|...|++. .. +.+...+..+...+...|++++|.+.|+++++..
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 223345556777787 9999999999987 22 3467889999999999999999999999999999
Q ss_pred CCCcccH
Q 036003 425 DSHGGDY 431 (558)
Q Consensus 425 ~~~~~~~ 431 (558)
|.+....
T Consensus 493 ~~~~~~~ 499 (537)
T 3fp2_A 493 RTMDEKL 499 (537)
T ss_dssp --CHHHH
T ss_pred CCcHHHH
Confidence 8875543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=4.9e-19 Score=172.11 Aligned_cols=303 Identities=9% Similarity=0.024 Sum_probs=192.1
Q ss_pred cHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHH
Q 036003 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE---PCVVSYNAIITAY 200 (558)
Q Consensus 124 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 200 (558)
.+..+...+... |++++|...|+.+++.. +.+..++..+...+...|++++|...|+++.+ .+...|..+...+
T Consensus 5 ~~~~~~~~~~~~--g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 5 KHLELGKKLLAA--GQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 444455555555 66666666666666653 33455666666666666666666666666543 2344566666666
Q ss_pred HHCCCccHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 036003 201 ARSSRPNEALSLFRELQERNLKP----TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276 (558)
Q Consensus 201 ~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 276 (558)
...|++++|...|++..+. .| +...+..+.... . ...+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCH
Confidence 6666666666666666553 23 122222221000 0 00111234566667777
Q ss_pred HHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHch
Q 036003 277 DDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353 (558)
Q Consensus 277 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 353 (558)
++|.+.|+++. ..+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...+++..
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777776654 2355667777777777777777777777777642 2355667777777777777777777777776
Q ss_pred hhcCCCCChhHHH------------HHHHHHhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCCHHHHHH
Q 036003 354 DKYGIVPGIKHYG------------CMVDLLGRAGRLDEAYRFIDEL-PIKST-P----ILWRTLLSSCSSHNNLGLAKQ 415 (558)
Q Consensus 354 ~~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~~-~~~~~-~----~~~~~l~~~~~~~g~~~~a~~ 415 (558)
+. .+.+...+. .+...+.+.|++++|.+.++++ ...|+ . ..+..+..++...|++++|..
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 53 122222222 2356678888888888888876 22233 2 234557778888889999999
Q ss_pred HHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 416 VIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
.++++++..|.++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999888888888888888888888899999999888888764
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=5.5e-19 Score=171.76 Aligned_cols=324 Identities=11% Similarity=0.006 Sum_probs=233.3
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHH
Q 036003 86 DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTL 165 (558)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 165 (558)
|+..|..+...+.+.|++++|+..|+++.+... .+...+..+...+... |++++|...++.+.+.. +.+...+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~-~~~~~~~~~l 77 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAM--GKSKAALPDLTKVIALK-MDFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhC-CCcchHHHHH
Confidence 355678889999999999999999999988633 3567788888888888 99999999999999875 4467889999
Q ss_pred HHHHHhCCChHHHHHHHhccCCCCc------chHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036003 166 INLYAECSDVEAARRIFENISEPCV------VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG 239 (558)
Q Consensus 166 l~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 239 (558)
...|...|++++|...|+++.+.+. ..+..+...+. ...+..+...+...|
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 9999999999999999999876332 22333311100 011223344455566
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHH
Q 036003 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEE 316 (558)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 316 (558)
++++|..+++.+.+.. +.+...+..+..++...|++++|...|+.+.+ .+..+|..+...+...|++++|...|++
T Consensus 135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666665543 33445555666666666666666666665542 2556666777777777777777777777
Q ss_pred HHHCCCCCC-HHHHH------------HHHHHHHccCChHHHHHHHHHchhhcCCCCCh----hHHHHHHHHHhhcCCHH
Q 036003 317 MMKAQVSPD-EITFL------------GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI----KHYGCMVDLLGRAGRLD 379 (558)
Q Consensus 317 m~~~g~~p~-~~~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~ 379 (558)
..+. .|+ ...+. .+...+.+.|++++|...++++.+. . +.+. ..+..+...+.+.|+++
T Consensus 214 a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 214 CLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-E-PSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-CCchHHHHHHHHHHHHHHHHccCHH
Confidence 7663 232 22222 2356678889999999999998874 2 2222 33556788899999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhc
Q 036003 380 EAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441 (558)
Q Consensus 380 ~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 441 (558)
+|.+.+++. ...| +..++..+...+...|++++|.+.|+++++.+|.+...+..+..++...
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 999999987 3234 6789999999999999999999999999999999888877777665443
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=2.3e-19 Score=172.19 Aligned_cols=289 Identities=14% Similarity=0.080 Sum_probs=142.4
Q ss_pred hcCCCCCCHHHHHHHHccCCCCCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHH
Q 036003 64 TQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143 (558)
Q Consensus 64 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a 143 (558)
.+. |++++|.++++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++... |++++|
T Consensus 14 ~~~---~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~--g~~EeA 80 (449)
T 1b89_A 14 EHI---GNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS--GNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHc---cCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhC--CCHHHH
Confidence 356 8999999999999665 49999999999999999999999653 5788999999999998 999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCC
Q 036003 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKP 223 (558)
Q Consensus 144 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 223 (558)
..+++..++. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+
T Consensus 81 i~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 81 VKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 9988877774 45678899999999999999999988864 77789999999999999999999999987
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHH
Q 036003 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303 (558)
Q Consensus 224 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 303 (558)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQD 219 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHH
Confidence 36899999999999999999999988 368899999999999999999988887765 455556679999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC------ChhHHHHHHHHHhhcCC
Q 036003 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP------GIKHYGCMVDLLGRAGR 377 (558)
Q Consensus 304 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~ 377 (558)
.|++++|+.+++...... +--...|+-|.-.+++- ++++..+.++...++-+++| +...|..++-.|...++
T Consensus 220 ~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e 297 (449)
T 1b89_A 220 RGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEE 297 (449)
T ss_dssp TTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhch
Confidence 999999999999988643 33455666666666654 34444444444444335555 57789999999999999
Q ss_pred HHHHHHHHHhC
Q 036003 378 LDEAYRFIDEL 388 (558)
Q Consensus 378 ~~~A~~~~~~~ 388 (558)
++.|...+-+-
T Consensus 298 ~d~A~~tm~~h 308 (449)
T 1b89_A 298 YDNAIITMMNH 308 (449)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhC
Confidence 99998876665
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.9e-18 Score=165.93 Aligned_cols=285 Identities=11% Similarity=0.057 Sum_probs=185.4
Q ss_pred ChHHHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036003 157 SNLYVCTTLINLYAECSDVEAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233 (558)
Q Consensus 157 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 233 (558)
.+...+..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|..+++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3444445555555555666666666655543 233444555555666666666666666665542 234455555666
Q ss_pred HHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHH
Q 036003 234 SCALLG-SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHK 309 (558)
Q Consensus 234 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 309 (558)
.+...| ++++|...++++.+.. +.+...+..+..++...|++++|...|++..+ .+...+..+...|...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 666666 6666666666665543 23345566666666666666666666666542 234556667777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcC-------CCCChhHHHHHHHHHhhcCCHHHHH
Q 036003 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG-------IVPGIKHYGCMVDLLGRAGRLDEAY 382 (558)
Q Consensus 310 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~ 382 (558)
|...+++..+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+...|.+.|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 777777777642 23456677777777777888888777777765311 1334567888888888888888888
Q ss_pred HHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHH-HhcCCh
Q 036003 383 RFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC-ARAGRW 444 (558)
Q Consensus 383 ~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 444 (558)
+.+++. .. +.+...+..+...+...|++++|.+.++++++..|.++..+..+..++ ...|+.
T Consensus 257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 888876 22 235677888888888888899999988888888888888888888877 344543
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=4.1e-17 Score=165.91 Aligned_cols=367 Identities=12% Similarity=0.029 Sum_probs=299.2
Q ss_pred CCChhHHHHHHHHhhc----CCCCCCHHHHHHHHccCCC-CCcccHHHHHHHHhc----CCCchHHHHHHHHhHHCCCCC
Q 036003 50 QNDLNVLTKLINFCTQ----NPTTSSMEHAHLLFDRIPE-PDIVLFNTMARGYSR----SKTPIRAIFLFVELLNSGLLP 120 (558)
Q Consensus 50 ~~~~~~~~~li~~~~~----~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p 120 (558)
..++..+..|-..|.. . +++++|...|++..+ .+...+..|...|.. .+++++|+.+|++..+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~---~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETT---KDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCC---cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3466777777777776 6 899999999987654 567788888888988 899999999999998865
Q ss_pred CcccHHHHHHHHHh----cCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh----CCChHHHHHHHhccCC-CCcc
Q 036003 121 DDYSFPSLLKACAC----VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE----CSDVEAARRIFENISE-PCVV 191 (558)
Q Consensus 121 ~~~~~~~ll~~~~~----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~-~~~~ 191 (558)
+...+..+-..+.. . +++++|...|++..+.| +...+..|...|.. .++.++|...|++..+ .+..
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~--~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~ 184 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVK--VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVW 184 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSC--CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHcCCCCC--CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 45666667777766 5 79999999999998876 56677788888887 7899999999988765 5777
Q ss_pred hHHHHHHHHHH----CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHH
Q 036003 192 SYNAIITAYAR----SSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL----LGSLDLGKWIHEYIKKYGLDKYVKVN 263 (558)
Q Consensus 192 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 263 (558)
++..+...|.. .+++++|.+.|++..+.| +...+..+...+.. .++.++|..+|++..+.+ +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 88888899988 899999999999988865 55667777777775 789999999999988765 34556
Q ss_pred HHHHHHHHh----cCCHHHHHHHHhccCCC-CHHhHHHHHHHHHHC-----CChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036003 264 TALIDMHAK----CGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATH-----GQGHKSILMFEEMMKAQVSPDEITFLGLL 333 (558)
Q Consensus 264 ~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 333 (558)
..+..+|.. .++.++|..+|++..+. +...+..+...|... +++++|+..|++..+.| +...+..+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 335 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLG 335 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHH
Confidence 667778887 89999999999988654 677888888888887 89999999999999875 456667777
Q ss_pred HHHHccC---ChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036003 334 YACSHTG---LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR----AGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406 (558)
Q Consensus 334 ~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (558)
..|...| ++++|.+.|++..+. .+...+..|...|.. .+++++|.++|++.-...++..+..|...|..
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYY 411 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 7776656 789999999999874 367788889999988 89999999999987334577888889999988
Q ss_pred ----cCCHHHHHHHHHHHHccCCC---CcccHHhHHHHHHh
Q 036003 407 ----HNNLGLAKQVIERIFELDDS---HGGDYVILSNLCAR 440 (558)
Q Consensus 407 ----~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 440 (558)
.++.++|...|+++.+.+|. ++.....+..++..
T Consensus 412 g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 412 GLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 89999999999999999844 66666666665543
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=1.8e-18 Score=169.10 Aligned_cols=280 Identities=10% Similarity=-0.042 Sum_probs=222.9
Q ss_pred HhCCChHHHHH-HHhccCC-----C--CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 036003 170 AECSDVEAARR-IFENISE-----P--CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSL 241 (558)
Q Consensus 170 ~~~g~~~~A~~-~~~~~~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 241 (558)
.-.|++++|.. .|++... | +...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34578888888 8886654 1 35668888899999999999999999998863 45677888888999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHH---------------HHHHHHH
Q 036003 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSA---------------MIVAYAT 303 (558)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~---------------li~~~~~ 303 (558)
++|...++++.+.. +.+..++..+..+|...|++++|.+.|+++... +...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 99999999998875 446778888999999999999999999887532 2222221 2333448
Q ss_pred CCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 036003 304 HGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382 (558)
Q Consensus 304 ~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 382 (558)
.|++++|+..|+++.+..... +..++..+...+...|++++|...|+++... .+.+...+..+...+.+.|++++|.
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999999853221 4788999999999999999999999999863 3446789999999999999999999
Q ss_pred HHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-----------cccHHhHHHHHHhcCChHHHHH
Q 036003 383 RFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH-----------GGDYVILSNLCARAGRWEDVDY 449 (558)
Q Consensus 383 ~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~ 449 (558)
..|+++ ... .+...+..+..++...|++++|...|+++++..|.+ ..+|..++.+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999987 323 467889999999999999999999999999988877 6789999999999999999999
Q ss_pred HHHH
Q 036003 450 LRKL 453 (558)
Q Consensus 450 ~~~~ 453 (558)
++++
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 8763
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=3.5e-17 Score=157.07 Aligned_cols=286 Identities=12% Similarity=-0.010 Sum_probs=164.9
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHH
Q 036003 86 DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTL 165 (558)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 165 (558)
+...+..+...+...|++++|+.+|+++.+... .+...+..+...+... |++++|..+++++.+.. +.+...+..+
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVEL--NKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHH--TCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHh--hhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 444555556666666666666666666655421 1333444455555555 66666666666665543 2334445555
Q ss_pred HHHHHhCC-ChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 036003 166 INLYAECS-DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244 (558)
Q Consensus 166 l~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 244 (558)
...+...| ++++|...|++. .+.. +.+...+..+...+...|++++|
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a-------------------------------~~~~-~~~~~~~~~l~~~~~~~~~~~~A 144 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKA-------------------------------TTLE-KTYGPAWIAYGHSFAVESEHDQA 144 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHH-------------------------------HTTC-TTCTHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHH-------------------------------HHhC-CccHHHHHHHHHHHHHccCHHHH
Confidence 55555555 555555555544 3321 12233444444444555555555
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCC
Q 036003 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321 (558)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 321 (558)
...++++.+.. +.+...+..+...|...|++++|...|++..+ .+...|..+...+...|++++|...+++..+..
T Consensus 145 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 145 MAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 55555544443 12233344455556666666666666655442 245566666677777777777777777666521
Q ss_pred --------CCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 036003 322 --------VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS 392 (558)
Q Consensus 322 --------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~ 392 (558)
.+.....+..+..++...|++++|...+++..+. .+.+...+..+...|.+.|++++|.+.|++. ...|
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 1223467777777888888888888888887763 2345677778888888888888888888877 4444
Q ss_pred -CHHHHHHHHHHH-HhcCCH
Q 036003 393 -TPILWRTLLSSC-SSHNNL 410 (558)
Q Consensus 393 -~~~~~~~l~~~~-~~~g~~ 410 (558)
+...+..+..++ ...|+.
T Consensus 302 ~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 302 DDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CCHHHHHHHHHHHHTTTTC-
T ss_pred CchHHHHHHHHHHHHHhCch
Confidence 556666676666 344544
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=3.4e-16 Score=159.09 Aligned_cols=353 Identities=10% Similarity=-0.026 Sum_probs=297.7
Q ss_pred CCCcccHHHHHHHHhc----CCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHh----cCcccHHHHHHHHHHHHHhCC
Q 036003 84 EPDIVLFNTMARGYSR----SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC----VGAEALEEGKQLHCFAIKLGL 155 (558)
Q Consensus 84 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~~~a~~~~~~~~~~g~ 155 (558)
..++.++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. . ++.++|...|++..+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~--~~~~~A~~~~~~a~~~~- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVP--QDYAQAVIWYKKAALKG- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC--CCHHHHHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC--CCHHHHHHHHHHHHHCC-
Confidence 3577788888888887 899999999999998864 45667777777776 6 89999999999999876
Q ss_pred CChHHHHHHHHHHHHh----CCChHHHHHHHhccCC-CCcchHHHHHHHHHH----CCCccHHHHHHHHHHHCCCCCCHH
Q 036003 156 NSNLYVCTTLINLYAE----CSDVEAARRIFENISE-PCVVSYNAIITAYAR----SSRPNEALSLFRELQERNLKPTDV 226 (558)
Q Consensus 156 ~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~ 226 (558)
+...+..|...|.. .+++++|...|++..+ .+..++..|...|.. .+++++|++.|++..+.| +..
T Consensus 110 --~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 110 --LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 56677778888888 8899999999998765 566778888888988 789999999999998865 667
Q ss_pred HHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhccCCC-CHHhHHHH
Q 036003 227 TMLSALSSCAL----LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK----CGRLDDAVSVFDNMSGK-DTQAWSAM 297 (558)
Q Consensus 227 ~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l 297 (558)
.+..+...+.. .++.++|..+|++..+.+ +...+..+...|.. .+++++|..+|++..+. +...+..+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l 261 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRL 261 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77888888877 899999999999998875 45567778888886 78999999999987654 67788888
Q ss_pred HHHHHH----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----CChHHHHHHHHHchhhcCCCCChhHHHHH
Q 036003 298 IVAYAT----HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT-----GLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368 (558)
Q Consensus 298 i~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 368 (558)
...|.. .+++++|+.+|++..+.| +...+..+...+... +++++|...|++..+. + +...+..|
T Consensus 262 g~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~l 334 (490)
T 2xm6_A 262 GYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANL 334 (490)
T ss_dssp HHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHH
Confidence 888888 899999999999998765 456677777777776 8999999999999874 3 55677888
Q ss_pred HHHHhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHh-
Q 036003 369 VDLLGRAG---RLDEAYRFIDELPIKSTPILWRTLLSSCSS----HNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR- 440 (558)
Q Consensus 369 i~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~- 440 (558)
...|...| ++++|.++|++.-...++..+..+...|.. .+++++|.+.|+++.+.+ ++.++..|+.+|..
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g 412 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYG 412 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcC
Confidence 88888766 789999999988334678899999999998 899999999999999876 46788999999998
Q ss_pred ---cCChHHHHHHHHHHHhCCC
Q 036003 441 ---AGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 441 ---~g~~~~A~~~~~~m~~~g~ 459 (558)
.+++++|...|++..+.+.
T Consensus 413 ~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 413 LGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999988764
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=2.7e-16 Score=161.59 Aligned_cols=394 Identities=13% Similarity=0.108 Sum_probs=284.9
Q ss_pred CCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC--C-CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHH
Q 036003 50 QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE--P-DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFP 126 (558)
Q Consensus 50 ~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 126 (558)
+-+...|..++.. .+. |++++|..+|+++.+ | +...|..++..+.+.|++++|..+|+++... .|+...|.
T Consensus 10 P~~~~~w~~l~~~-~~~---~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~ 83 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQN---QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWK 83 (530)
T ss_dssp TTCHHHHHHHHHH-HHS---SCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHH
T ss_pred CCCHHHHHHHHHH-HHh---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHH
Confidence 4467788888884 667 999999999998865 3 5567889999999999999999999999875 46766666
Q ss_pred HHHHHHH-hcCcccHHHHH----HHHHHHHHh-CCCC-hHHHHHHHHHHHHh---------CCChHHHHHHHhccCC-CC
Q 036003 127 SLLKACA-CVGAEALEEGK----QLHCFAIKL-GLNS-NLYVCTTLINLYAE---------CSDVEAARRIFENISE-PC 189 (558)
Q Consensus 127 ~ll~~~~-~~~~~~~~~a~----~~~~~~~~~-g~~~-~~~~~~~ll~~~~~---------~g~~~~A~~~~~~~~~-~~ 189 (558)
..+.... .. |+.+.|. ++|+..+.. |..| +...|...+....+ .|+++.|..+|++..+ |.
T Consensus 84 ~~~~~~~~~~--~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~ 161 (530)
T 2ooe_A 84 CYLSYVRETK--GKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM 161 (530)
T ss_dssp HHHHHHHHHT--TTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHc--cchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchh
Confidence 6664332 23 5555544 477776654 5443 45677777776655 6889999999998876 33
Q ss_pred c---chHHHHHHHH-------------HHCCCccHHHHHHHHHH------HCC---CCCCH--------HHHHHHHHHHh
Q 036003 190 V---VSYNAIITAY-------------ARSSRPNEALSLFRELQ------ERN---LKPTD--------VTMLSALSSCA 236 (558)
Q Consensus 190 ~---~~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~~---~~p~~--------~~~~~ll~~~~ 236 (558)
. ..|....... .+.+++..|..++.++. +.. ++|+. ..|...+....
T Consensus 162 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~ 241 (530)
T 2ooe_A 162 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK 241 (530)
T ss_dssp TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHH
Confidence 2 2333222211 12345677777776532 211 34442 34444443322
Q ss_pred c----cCCh----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHhccCC---C-C
Q 036003 237 L----LGSL----DLGKWIHEYIKKYGLDKYVKVNTALIDMHAK-------CGRLD-------DAVSVFDNMSG---K-D 290 (558)
Q Consensus 237 ~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~---~-~ 290 (558)
. .++. ..+..+|+++.... +.+...|..++..+.+ .|+++ +|..+|++..+ | +
T Consensus 242 ~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~ 320 (530)
T 2ooe_A 242 SNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 320 (530)
T ss_dssp HCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC
T ss_pred cCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc
Confidence 2 1233 36778898888763 4567788888888875 79987 89999998764 3 6
Q ss_pred HHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHH
Q 036003 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD-E-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368 (558)
Q Consensus 291 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 368 (558)
...|..++..+.+.|++++|..+|+++.+ ..|+ . ..|..++..+.+.|++++|.++|++..+. .+.+...|...
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~ 396 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTA 396 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHH
Confidence 78899999999999999999999999998 4554 2 47888888888999999999999999863 22233444333
Q ss_pred HHH-HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcc----cHHhHHHHHHhc
Q 036003 369 VDL-LGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG----DYVILSNLCARA 441 (558)
Q Consensus 369 i~~-~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~ 441 (558)
+.. +...|+.++|.++|++. ...| ++..|..++..+.+.|+.++|..+|++++...|.++. .|...+......
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~ 476 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 476 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 322 34689999999999987 2234 6789999999999999999999999999998766554 677778888889
Q ss_pred CChHHHHHHHHHHHh
Q 036003 442 GRWEDVDYLRKLMKD 456 (558)
Q Consensus 442 g~~~~A~~~~~~m~~ 456 (558)
|+.+.+..+++++.+
T Consensus 477 G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 477 GDLASILKVEKRRFT 491 (530)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998875
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=4.9e-18 Score=165.82 Aligned_cols=261 Identities=10% Similarity=-0.072 Sum_probs=212.9
Q ss_pred CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 036003 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALID 268 (558)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 268 (558)
+...|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|...|+++.+.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888899999999999999999988763 4567788899999999999999999999998875 445778888999
Q ss_pred HHHhcCCHHHHHHHHhccCCCC-------------HHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 036003 269 MHAKCGRLDDAVSVFDNMSGKD-------------TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS-PDEITFLGLLY 334 (558)
Q Consensus 269 ~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~ 334 (558)
+|...|++++|...|+++.+.+ ...+..+...+...|++++|+..|+++.+.... ++...+..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999998876432 122344578899999999999999999985322 15788999999
Q ss_pred HHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 036003 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGL 412 (558)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 412 (558)
.+...|++++|...|+++.+. .+.+..+|..+..+|.+.|++++|.+.|+++ ...| +..++..+..+|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999873 3456889999999999999999999999987 3334 57889999999999999999
Q ss_pred HHHHHHHHHccCCC------------CcccHHhHHHHHHhcCChHHHHHHHHH
Q 036003 413 AKQVIERIFELDDS------------HGGDYVILSNLCARAGRWEDVDYLRKL 453 (558)
Q Consensus 413 a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 453 (558)
|...|+++++..|. +...|..+..++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998765 356789999999999999998887664
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=2.7e-17 Score=160.67 Aligned_cols=285 Identities=13% Similarity=-0.025 Sum_probs=148.3
Q ss_pred cCCCchHHHH-HHHHhHHCCC---CCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 036003 99 RSKTPIRAIF-LFVELLNSGL---LPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174 (558)
Q Consensus 99 ~~g~~~~A~~-~~~~m~~~g~---~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 174 (558)
..|++++|+. .|++..+... ..+...+..+...+... |++++|...++++++.. +.+..++..+..+|.+.|+
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQE--GDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHT--TCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 3466777776 6665543211 11345566666667666 77777777777777654 4456667777777777777
Q ss_pred hHHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHH-HHHH---------------HHHHH
Q 036003 175 VEAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV-TMLS---------------ALSSC 235 (558)
Q Consensus 175 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~---------------ll~~~ 235 (558)
+++|...|+++.+ .+..+|..+...|...|++++|.+.|+++.+.. |+.. .+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 7777777776653 355667777777777777777777777776643 2211 1110 11112
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHH
Q 036003 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315 (558)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 315 (558)
...|++++|..+++++.+..... .+..+|..+...|...|++++|+..|+
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 241 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTS------------------------------IDPDVQCGLGVLFNLSGEYDKAVDCFT 241 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTS------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCc------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 24445555555555544433111 023344444444555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCC
Q 036003 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL----PIK 391 (558)
Q Consensus 316 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~ 391 (558)
++.+.. +.+...+..+...+...|++++|...|+++.+. .+.+...+..+...|.+.|++++|...|+++ +..
T Consensus 242 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 242 AALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 544421 113344555555555555555555555555432 1223445555555555555555555555544 100
Q ss_pred ---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036003 392 ---------STPILWRTLLSSCSSHNNLGLAKQVIERIF 421 (558)
Q Consensus 392 ---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (558)
....+|..+..++...|++++|..++++.+
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 319 RGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp ------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 014556666666666666666666655433
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=3.6e-16 Score=146.80 Aligned_cols=270 Identities=10% Similarity=0.008 Sum_probs=212.2
Q ss_pred HHHHhCCChHHHHHHHhccCCCC----cchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 036003 167 NLYAECSDVEAARRIFENISEPC----VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242 (558)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 242 (558)
+-....|++..|+..+++....+ ......+..+|...|+++.|+..++.. -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 44556788889988888766532 234456778899999998888766442 3566778888888888999999
Q ss_pred HHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCC
Q 036003 243 LGKWIHEYIKKYGLDK-YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321 (558)
Q Consensus 243 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 321 (558)
+|.+.++++...+..| +...+..+..+|...|++++|++.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 9999999988876434 566677778999999999999999998 567889999999999999999999999999985
Q ss_pred CCCCHHHH---HHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHH
Q 036003 322 VSPDEITF---LGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPIL 396 (558)
Q Consensus 322 ~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~ 396 (558)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|++. ...| ++.+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4554311 22334445668999999999999974 5568889999999999999999999999997 3334 6788
Q ss_pred HHHHHHHHHhcCCHHH-HHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHH
Q 036003 397 WRTLLSSCSSHNNLGL-AKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL 450 (558)
Q Consensus 397 ~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 450 (558)
+..++..+...|+.++ +.++++++++.+|.++.+. +...+.+.++++..-
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHH
Confidence 9999999999999876 6799999999999986543 345555555555443
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=2.5e-18 Score=165.02 Aligned_cols=279 Identities=10% Similarity=0.050 Sum_probs=125.7
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 217 (558)
|++++|.++++++ +++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++...
T Consensus 17 ~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 17 GNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7788888888776 23358888888888888888888888654 566688888888888888888888776665
Q ss_pred HCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHH
Q 036003 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297 (558)
Q Consensus 218 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 297 (558)
+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|..+|..+ ..|..+
T Consensus 89 k~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 89 KK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp ----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred Hh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 53 4556777888888888888888887774 366678888888888888888888888877 478888
Q ss_pred HHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCC
Q 036003 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377 (558)
Q Consensus 298 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 377 (558)
+.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|...... +...+.....++..|.+.|+
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGY 222 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHHCCC
Confidence 88888888888888888887 2678888888888888888888554433 22344445568888888888
Q ss_pred HHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHccCC-----CCcccHHhHHHHHHhcCChHHHH
Q 036003 378 LDEAYRFIDEL-PI-KSTPILWRTLLSSCSSH--NNLGLAKQVIERIFELDD-----SHGGDYVILSNLCARAGRWEDVD 448 (558)
Q Consensus 378 ~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~ 448 (558)
+++|..+++.. +. +.....|+-|..+|++. ++..+.++.|..-+.+.| .+...|.-+...|...++|+.|.
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 88888888875 33 33566777777666654 455666666655444445 56778888888888888888877
Q ss_pred HH
Q 036003 449 YL 450 (558)
Q Consensus 449 ~~ 450 (558)
..
T Consensus 303 ~t 304 (449)
T 1b89_A 303 IT 304 (449)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=7.9e-17 Score=154.37 Aligned_cols=259 Identities=12% Similarity=-0.012 Sum_probs=191.0
Q ss_pred chHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 036003 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270 (558)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (558)
..|..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345555666666666666666666665542 2345556666666666666666666666666653 33455566666666
Q ss_pred HhcCCHHHHHHHHhccCCC---CHHhHHHH--------------HH-HHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036003 271 AKCGRLDDAVSVFDNMSGK---DTQAWSAM--------------IV-AYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332 (558)
Q Consensus 271 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 332 (558)
...|++++|.+.|+++.+. +...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 6667777776666665422 22222222 22 3667788999999999998853 2367888889
Q ss_pred HHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCH
Q 036003 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNL 410 (558)
Q Consensus 333 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~ 410 (558)
...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.|+++ .. +.+..++..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999999863 3446788999999999999999999999987 22 34678899999999999999
Q ss_pred HHHHHHHHHHHccCCC------------CcccHHhHHHHHHhcCChHHHHHHHHHH
Q 036003 411 GLAKQVIERIFELDDS------------HGGDYVILSNLCARAGRWEDVDYLRKLM 454 (558)
Q Consensus 411 ~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (558)
++|.+.++++++..|. +...+..++.+|.+.|++++|..++++.
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999988 6788999999999999999999998744
No 27
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.75 E-value=2.3e-14 Score=153.05 Aligned_cols=350 Identities=13% Similarity=0.073 Sum_probs=273.5
Q ss_pred CChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC-CC-----cccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCccc
Q 036003 51 NDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE-PD-----IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYS 124 (558)
Q Consensus 51 ~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 124 (558)
.++.-....+.+|... |.+.+|.++++++.- ++ ...-+.++.+..+. +..+..+...+.... .
T Consensus 983 ~~PeeVs~~vKaf~~a---glp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d 1051 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTA---DLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------D 1051 (1630)
T ss_pred cCHHHhHHHHHHHHhC---CCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------c
Confidence 3344445667888888 999999999998763 22 24455677666666 556666666655421 1
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCC
Q 036003 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204 (558)
Q Consensus 125 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 204 (558)
...+...+... |.+++|..+|++.. -.....+.++. ..+++++|.++.++.. +..+|..+..++.+.|
T Consensus 1052 ~~eIA~Iai~l--glyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1052 APDIANIAISN--ELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHHHhC--CCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCC
Confidence 33455667777 99999999998852 12222333332 7789999999999874 4678999999999999
Q ss_pred CccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 036003 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFD 284 (558)
Q Consensus 205 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 284 (558)
++++|++.|.+. -|...|..++.+|.+.|++++|.+++....+..-.+.+ .+.++.+|++.+++++...+.
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~I--dt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccc--cHHHHHHHHhhcCHHHHHHHH-
Confidence 999999999663 46778899999999999999999999988876533333 345999999999999755553
Q ss_pred ccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhH
Q 036003 285 NMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364 (558)
Q Consensus 285 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 364 (558)
..++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++.. +..+
T Consensus 1191 --~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~a 1252 (1630)
T 1xi4_A 1191 --NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRT 1252 (1630)
T ss_pred --hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHH
Confidence 4556777888999999999999999999985 479999999999999999999998773 5689
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhc--C
Q 036003 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA--G 442 (558)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g 442 (558)
|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+.+++.+...|.-|...|++. +
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHH
Confidence 999999999999999999987764 345566778999999999999999999999999999988898888888765 3
Q ss_pred ChHHHHHHHH
Q 036003 443 RWEDVDYLRK 452 (558)
Q Consensus 443 ~~~~A~~~~~ 452 (558)
+..++.++|.
T Consensus 1331 klmEhlk~f~ 1340 (1630)
T 1xi4_A 1331 KMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHH
Confidence 4555555554
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=5.5e-16 Score=156.87 Aligned_cols=381 Identities=10% Similarity=-0.076 Sum_probs=217.8
Q ss_pred CChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC-----------C-CcccHHHHHHHHhcCCCchHHHHHHHHhHHC--
Q 036003 51 NDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE-----------P-DIVLFNTMARGYSRSKTPIRAIFLFVELLNS-- 116 (558)
Q Consensus 51 ~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~-----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 116 (558)
.....||.|...|... |++++|++.|++..+ | ...+|+.+...|...|++++|...|++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~---G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLK---GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp -CCHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 3356778787788887 888888887765421 2 3456778888888888888888887776542
Q ss_pred ---C-CCC-CcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHH---HHhCCChHHHHHHHhccCC-
Q 036003 117 ---G-LLP-DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINL---YAECSDVEAARRIFENISE- 187 (558)
Q Consensus 117 ---g-~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~---~~~~g~~~~A~~~~~~~~~- 187 (558)
+ ..+ ...++...-.++...+.+++++|...|++.++.. +-+...+..+..+ +...++.++|++.|++..+
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp HSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred hcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 1 011 1233444444444443357788888888877764 2234444444433 3345666667666665543
Q ss_pred --CCcchHHHHHHHHHH----CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchh
Q 036003 188 --PCVVSYNAIITAYAR----SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261 (558)
Q Consensus 188 --~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 261 (558)
.+..++..+...+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...++++.+.. +.+..
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 282 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAY 282 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHH
Confidence 234444444444433 356677777777766542 3455566677777777777777777777777654 33444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 036003 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341 (558)
Q Consensus 262 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 341 (558)
++..+..+|...+....+... ..........+.+++|...+++..+.. +.+...+..+...+...|+
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~------------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRE------------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhhhHHH------------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhcc
Confidence 555555555332111110000 000001111223567788888777642 1234567778888888999
Q ss_pred hHHHHHHHHHchhhcCCCCCh--hHHHHHHH-HHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036003 342 VDEGWNYFYSMRDKYGIVPGI--KHYGCMVD-LLGRAGRLDEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLAKQVI 417 (558)
Q Consensus 342 ~~~a~~~~~~~~~~~~~~~~~--~~~~~li~-~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 417 (558)
+++|...|++..+. ...+.. ..+..+.. .+...|++++|+..|++. .+.|+..... +....+.+++
T Consensus 350 ~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~~~ 419 (472)
T 4g1t_A 350 YEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHH
Confidence 99999999888753 322211 12233332 234678899999988876 4455543222 2234566778
Q ss_pred HHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036003 418 ERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460 (558)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 460 (558)
++.++.+|.++.+|..|+.+|...|++++|.+.|++..+.|-.
T Consensus 420 ~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 8888899999999999999999999999999999998876543
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=8.1e-17 Score=157.14 Aligned_cols=259 Identities=13% Similarity=0.013 Sum_probs=154.5
Q ss_pred CcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHH
Q 036003 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE---PCVVSYNAII 197 (558)
Q Consensus 121 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 197 (558)
+...+..+...+... |++++|...|+++++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+.
T Consensus 64 ~~~~~~~~~~~~~~~--g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKE--GDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHH--TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHC--CCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 334466666666666 77777777777777664 44566777777777777777777777776653 3456677777
Q ss_pred HHHHHCCCccHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-chhHHHH
Q 036003 198 TAYARSSRPNEALSLFRELQERNLKPT-----------DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK-YVKVNTA 265 (558)
Q Consensus 198 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ 265 (558)
..|...|++++|+..|+++.+. .|+ ...+..+...+...|++++|..+++++.+..... +..++..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 7777777777777777777653 222 1222334566667777777777777776664221 4556666
Q ss_pred HHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCC
Q 036003 266 LIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGL 341 (558)
Q Consensus 266 l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~ 341 (558)
+...|.+.|++++|.+.|++.. ..+..+|..+..+|...|++++|+..|+++.+. .| +..++..+..+|...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCC
Confidence 6677777777777777666654 224556666666666777777777777666663 23 35566666666666666
Q ss_pred hHHHHHHHHHchhhcCCC----------CChhHHHHHHHHHhhcCCHHHHHHHHH
Q 036003 342 VDEGWNYFYSMRDKYGIV----------PGIKHYGCMVDLLGRAGRLDEAYRFID 386 (558)
Q Consensus 342 ~~~a~~~~~~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~~A~~~~~ 386 (558)
+++|...|+++.+...-. .+...|..+..++...|+.+.+.++..
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 666666666665421000 013445555555555555555554443
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=3e-16 Score=147.31 Aligned_cols=246 Identities=11% Similarity=0.069 Sum_probs=203.6
Q ss_pred HHHHHHCCCccHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036003 197 ITAYARSSRPNEALSLFRELQERNLKPTD--VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274 (558)
Q Consensus 197 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 274 (558)
|+-....|++..|+..++..... .|+. .....+..++...|+++.|...++. .-+|+...+..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 44566789999999999876543 3443 3556678899999999999986654 24667888888999999999
Q ss_pred CHHHHHHHHhccC----CC-CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 036003 275 RLDDAVSVFDNMS----GK-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYF 349 (558)
Q Consensus 275 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 349 (558)
+.++|++.++++. .| +...+..+...+.+.|++++|+..+++ ..+...+..+...+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 23 667788888999999999999999997 457788999999999999999999999
Q ss_pred HHchhhcCCCCChhH---HHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 036003 350 YSMRDKYGIVPGIKH---YGCMVDLLGRAGRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424 (558)
Q Consensus 350 ~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 424 (558)
+++.+. .|+... ...++..+...|++++|..+|+++ ..+.+...++.+..++...|++++|+..|+++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999874 354321 123345555669999999999998 334578899999999999999999999999999999
Q ss_pred CCCcccHHhHHHHHHhcCChHH-HHHHHHHHHhC
Q 036003 425 DSHGGDYVILSNLCARAGRWED-VDYLRKLMKDR 457 (558)
Q Consensus 425 ~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~ 457 (558)
|.++.++..++.++...|+.++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999976 57899988764
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=3.5e-14 Score=145.80 Aligned_cols=396 Identities=10% Similarity=0.031 Sum_probs=283.0
Q ss_pred CHHHHHHHHHhccCCchH---HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC--CCcccHHHHH
Q 036003 20 NTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE--PDIVLFNTMA 94 (558)
Q Consensus 20 ~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li 94 (558)
+...|..++.. .+.++. +.+++.+.+. .+.+...|..++..+.+. |++++|..+|++... |++..|...+
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~---~~~~~a~~~~~ral~~~p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKA---KNYDKVEKLFQRCLMKVLHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 45667777764 334444 6777777654 456678999999999999 999999999999875 7777777777
Q ss_pred HHH-hcCCCchHHHH----HHHHhHHC-CCCCC-cccHHHHHHHHHh---------cCcccHHHHHHHHHHHHHhCCCCh
Q 036003 95 RGY-SRSKTPIRAIF----LFVELLNS-GLLPD-DYSFPSLLKACAC---------VGAEALEEGKQLHCFAIKLGLNSN 158 (558)
Q Consensus 95 ~~~-~~~g~~~~A~~----~~~~m~~~-g~~p~-~~~~~~ll~~~~~---------~~~~~~~~a~~~~~~~~~~g~~~~ 158 (558)
... ...|+.++|.+ +|++.... |..|+ ...|...+..... . |+++.|..+|++.++......
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~--~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAEN--QRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHH--HHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHH--hHHHHHHHHHHHHHhchhhhH
Confidence 533 35678877765 77776543 65554 4456666655443 4 889999999999987321112
Q ss_pred HHHHHHHHHHH-------------HhCCChHHHHHHHhc-------cCC------CC--------cchHHHHHHHHHHC-
Q 036003 159 LYVCTTLINLY-------------AECSDVEAARRIFEN-------ISE------PC--------VVSYNAIITAYARS- 203 (558)
Q Consensus 159 ~~~~~~ll~~~-------------~~~g~~~~A~~~~~~-------~~~------~~--------~~~~~~li~~~~~~- 203 (558)
...|....... .+.+++..|..++.. +.. |+ ...|...+......
T Consensus 165 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~ 244 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP 244 (530)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCC
Confidence 23443322211 134567777776654 111 22 23455555433332
Q ss_pred ---CCc----cHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-------cCChH-------HHHHHHHHHHHhCCCCchhH
Q 036003 204 ---SRP----NEALSLFRELQERNLKPTDVTMLSALSSCAL-------LGSLD-------LGKWIHEYIKKYGLDKYVKV 262 (558)
Q Consensus 204 ---g~~----~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~ 262 (558)
++. .+|..+|++.... .+-+...|......+.+ .|+++ +|..++++..+.-.+.+...
T Consensus 245 ~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 245 LRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp SCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred ccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 232 3778889988875 24466777777777765 79987 89999999886323556888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC--C-CH-HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHH
Q 036003 263 NTALIDMHAKCGRLDDAVSVFDNMSG--K-DT-QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY-ACS 337 (558)
Q Consensus 263 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~-~~~ 337 (558)
|..++..+.+.|++++|..+|+++.+ + +. ..|...+..+.+.|+.++|..+|++..+... .+...|..... .+.
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHH
Confidence 99999999999999999999998763 3 33 5799999999999999999999999988521 12233332222 234
Q ss_pred ccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHH
Q 036003 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKST--PILWRTLLSSCSSHNNLG 411 (558)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~ 411 (558)
..|++++|..+|+...+. .+.+...|..++..+.+.|+.++|..+|++. +..|+ ...|...+......|+.+
T Consensus 403 ~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 480 (530)
T ss_dssp HTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred HcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 689999999999999874 2446789999999999999999999999987 22332 458888888889999999
Q ss_pred HHHHHHHHHHccCCC
Q 036003 412 LAKQVIERIFELDDS 426 (558)
Q Consensus 412 ~a~~~~~~~~~~~~~ 426 (558)
.+..+++++.+..|.
T Consensus 481 ~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 481 SILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHCch
Confidence 999999999988774
No 32
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=7.4e-14 Score=149.26 Aligned_cols=374 Identities=10% Similarity=0.047 Sum_probs=281.8
Q ss_pred HHHHHhccCCchHHHHHHHHHHhCCCC-----ChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHHHHHHHHhc
Q 036003 25 LSLLPRCTSFRGLKQIHAVTIKTHLQN-----DLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99 (558)
Q Consensus 25 ~~ll~~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 99 (558)
....+++...+....+.+.+.+.-+.| +....+.|+....+. +..+.....++...-+ ...+...+..
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka----D~~Rv~eyI~kLd~~d---~~eIA~Iai~ 1061 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA----DRTRVMEYINRLDNYD---APDIANIAIS 1061 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh----ChhhHHHHHHHhhhcc---HHHHHHHHHh
Confidence 344555555555533333333322333 346777777766665 3344444444443322 4557888899
Q ss_pred CCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHH
Q 036003 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179 (558)
Q Consensus 100 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 179 (558)
.|.+++|..+|++.. -.....+.++. .. +++++|.++.++. -+..+|..+..++.+.|++++|.
T Consensus 1062 lglyEEAf~IYkKa~-----~~~~A~~VLie---~i--~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFD-----VNTSAVQVLIE---HI--GNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred CCCHHHHHHHHHHcC-----CHHHHHHHHHH---HH--hhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999862 12223344444 34 8999999998865 35788999999999999999999
Q ss_pred HHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc
Q 036003 180 RIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259 (558)
Q Consensus 180 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 259 (558)
+.|.+. .|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.++++....+. + .++
T Consensus 1126 dsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A 1126 DSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPN 1194 (1630)
T ss_pred HHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCC
Confidence 999775 677889999999999999999999999877653 44333445899999999988655443 2 345
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036003 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339 (558)
Q Consensus 260 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 339 (558)
...+..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++. .+..+|..+-.+|...
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDG 1263 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhh
Confidence 566667999999999999999999985 58999999999999999999999986 3568899999999999
Q ss_pred CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh--cCCHHHHHH
Q 036003 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSS--HNNLGLAKQ 415 (558)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~--~g~~~~a~~ 415 (558)
|++..|......+ ..+...+..++..|.+.|.+++|+.+++.. +..+ ....|.-+...+++ -++..++.+
T Consensus 1264 ~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1264 KEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred hHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999998876543 346778889999999999999999999876 4333 44567666666665 457777778
Q ss_pred HHHHHHccCC-----CCcccHHhHHHHHHhcCChHHHHH
Q 036003 416 VIERIFELDD-----SHGGDYVILSNLCARAGRWEDVDY 449 (558)
Q Consensus 416 ~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~ 449 (558)
+|..-....| .+...|.-++..|.+.|+|+.|..
T Consensus 1338 ~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1338 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 8777666554 556779999999999999999984
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=1.3e-15 Score=145.87 Aligned_cols=274 Identities=10% Similarity=-0.038 Sum_probs=168.0
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHH
Q 036003 86 DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTL 165 (558)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 165 (558)
+...|..+...+...|++++|+.+|+++.+... .+...+..+...+... |++++|...++++.+.. +.+..++..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~-~~~~~~~~~l 95 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAEN--EKDGLAIIALNHARMLD-PKDIAVHAAL 95 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcC-cCCHHHHHHH
Confidence 445566677777777788888888777766432 2455666666666666 77777777777777764 3455666666
Q ss_pred HHHHHhCCChHHHHHHHhccCC--C-CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhccCC
Q 036003 166 INLYAECSDVEAARRIFENISE--P-CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS--SCALLGS 240 (558)
Q Consensus 166 l~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~ 240 (558)
...|...|++++|...|+++.+ | +...+..+... .|+......+.. .+...|+
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 153 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNE 153 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHccc
Confidence 7777777777777777666543 1 11112111000 011111111112 2555666
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHHHHH
Q 036003 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMFEEM 317 (558)
Q Consensus 241 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 317 (558)
+++|..+++++.+.. +.+...+..+...|.+.|++++|.+.|+++. ..+..+|..+...+...|++++|...|+++
T Consensus 154 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 154 YRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666666554 2345566666667777777777777776654 225566777777777777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC-----------ChhHHHHHHHHHhhcCCHHHHHHHHH
Q 036003 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP-----------GIKHYGCMVDLLGRAGRLDEAYRFID 386 (558)
Q Consensus 318 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~ 386 (558)
.+.. +.+...+..+...+...|++++|.+.++++... .... +...+..+..++.+.|++++|..+++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM-QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 6642 224566777777777778888887777777653 1110 35677777788888888888877776
Q ss_pred hC
Q 036003 387 EL 388 (558)
Q Consensus 387 ~~ 388 (558)
+.
T Consensus 311 ~~ 312 (327)
T 3cv0_A 311 QN 312 (327)
T ss_dssp CC
T ss_pred HH
Confidence 54
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=3.1e-17 Score=169.69 Aligned_cols=151 Identities=15% Similarity=0.119 Sum_probs=124.2
Q ss_pred CCChHHHHHHHHHHHHhCCChHHHHHHHhccC-------CCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHH
Q 036003 155 LNSNLYVCTTLINLYAECSDVEAARRIFENIS-------EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT 227 (558)
Q Consensus 155 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 227 (558)
...-..+||+||++|++.|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456799999999999999999999997764 48999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----CHHhHHHHHHHH
Q 036003 228 MLSALSSCALLGSL-DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-----DTQAWSAMIVAY 301 (558)
Q Consensus 228 ~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~ 301 (558)
|+++|.++++.|+. +.|.++|++|.+.|+.||..+|++++....+.+-++.+.++...+..+ .+.+...|...|
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 99999999999985 789999999999999999999999998887765555555554444321 123334445555
Q ss_pred HHCC
Q 036003 302 ATHG 305 (558)
Q Consensus 302 ~~~~ 305 (558)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 5444
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=5.9e-15 Score=135.94 Aligned_cols=218 Identities=7% Similarity=-0.041 Sum_probs=162.3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---C-------HHhHHH
Q 036003 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---D-------TQAWSA 296 (558)
Q Consensus 227 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~-------~~~~~~ 296 (558)
.+..+...+...|++++|..+++++.+.. .+...+..+..+|...|++++|...|++..+. + ..+|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44445555555566666666666555554 44555555666666666666666666655421 1 456777
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcC
Q 036003 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376 (558)
Q Consensus 297 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 376 (558)
+...|...|++++|+..|++..+. .|+. ..+...|++++|...++.+.. ..+.+...+..+...+...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhc
Confidence 888888888888888888888873 4553 345566788899998888875 33345677888888899999
Q ss_pred CHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHH
Q 036003 377 RLDEAYRFIDEL-P-IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454 (558)
Q Consensus 377 ~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (558)
++++|.+.|++. . .+.+..+|..+...+...|++++|...++++++..|.++.+|..++.+|.+.|++++|...+++.
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999887 2 23467888899999999999999999999999999999999999999999999999999999988
Q ss_pred HhC
Q 036003 455 KDR 457 (558)
Q Consensus 455 ~~~ 457 (558)
.+.
T Consensus 234 ~~~ 236 (258)
T 3uq3_A 234 RTK 236 (258)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=165.73 Aligned_cols=127 Identities=12% Similarity=0.085 Sum_probs=97.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccC-------CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHH
Q 036003 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMS-------GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITF 329 (558)
Q Consensus 257 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 329 (558)
..-..+||+||++|++.|++++|.++|+.|. .+|+.+||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345677888888888888888888876653 458888888888888888888888888888888888888888
Q ss_pred HHHHHHHHccCCh-HHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 036003 330 LGLLYACSHTGLV-DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF 384 (558)
Q Consensus 330 ~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 384 (558)
+++|.++++.|+. ++|.++|++|.++ |+.||..+|++++....+.+-++.+.++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence 8888888888874 6788888888886 8888888888888776665444443333
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=8.5e-15 Score=134.89 Aligned_cols=233 Identities=9% Similarity=-0.026 Sum_probs=164.1
Q ss_pred hHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC--Cc----hhHHHH
Q 036003 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD--KY----VKVNTA 265 (558)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 265 (558)
.|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...++++.+.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45556666667777777777777666654 55666666777777777777777777766654211 11 456666
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHH
Q 036003 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDE 344 (558)
Q Consensus 266 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~ 344 (558)
+...|.+.|++++|...|++..+.+.. ...+...|++++|...++++... .| +...+..+...+...|++++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHH
Confidence 777777777777777777766532111 23455667788888888888774 33 34567777778888888888
Q ss_pred HHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 036003 345 GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFE 422 (558)
Q Consensus 345 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 422 (558)
|...++++... .+.+...+..+...|.+.|++++|.+.|++. ... .+...|..+..++...|++++|.+.++++++
T Consensus 158 A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 158 AVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888888763 3446778888888888999999998888887 223 3577888899999999999999999999988
Q ss_pred cC------CCCcccHHhHH
Q 036003 423 LD------DSHGGDYVILS 435 (558)
Q Consensus 423 ~~------~~~~~~~~~l~ 435 (558)
.. |.+...+..+.
T Consensus 236 ~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 236 KDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHTTTTHHHHHHHHH
T ss_pred hChhhcCCCchHHHHHHHH
Confidence 87 66555444443
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=1.3e-14 Score=130.10 Aligned_cols=195 Identities=14% Similarity=0.033 Sum_probs=150.4
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 036003 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGL 332 (558)
Q Consensus 257 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l 332 (558)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45566777788888888888888888887653 36777888888888888888998888888874 34 45677788
Q ss_pred HHHHHcc-----------CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 036003 333 LYACSHT-----------GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTPILWRTL 400 (558)
Q Consensus 333 l~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l 400 (558)
..++... |++++|...|++..+. -+.+...+..+...|...|++++|+..|++. ....++..+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8888888 9999999999999863 2345778889999999999999999999987 212788899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 401 LSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 401 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
..++...|++++|...|+++++.+|.++..+..++.++.+.|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999988654
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=2.5e-14 Score=143.26 Aligned_cols=378 Identities=11% Similarity=-0.011 Sum_probs=244.9
Q ss_pred HHHHhhcCCCCCCHHHHHHHHccCCC-CCcccHHHHHHHHhcCCCc---hHHHHHHHHhHHCCCCCCcccHHHHHHHHHh
Q 036003 59 LINFCTQNPTTSSMEHAHLLFDRIPE-PDIVLFNTMARGYSRSKTP---IRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134 (558)
Q Consensus 59 li~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 134 (558)
+...+.+. |++++|.++|++..+ .+...+..|...|...|++ ++|+.+|++..+. +...+..+-..+..
T Consensus 9 la~~~~~~---g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKR---GDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 45566667 899999999987654 3556666677777777888 8999999888754 44555555554444
Q ss_pred cC---cccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHH---HHHHHhccCC-CCcchHHHHHHHHHHCCCcc
Q 036003 135 VG---AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEA---ARRIFENISE-PCVVSYNAIITAYARSSRPN 207 (558)
Q Consensus 135 ~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~---A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~ 207 (558)
.+ .++.++|...|++..+.|.. ..+..|...|...+..+. +.+.+..... .+...+..|...|...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcc
Confidence 41 13788999999999887732 256667777777665443 3333333332 46677888888888888666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc----CCHHHHH
Q 036003 208 EALSLFRELQERNLKPTDVTMLSALSSCALLG---SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC----GRLDDAV 280 (558)
Q Consensus 208 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~ 280 (558)
++........+.-...+...+..+...|...| +.++|..+|++..+.| +++...+..|..+|... +++++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 66555433332212223337777888888888 8899999999998887 34444445577777665 7899999
Q ss_pred HHHhccCCCCHHhHHHHHHH-H--HHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-----ChHHHHHHHHHc
Q 036003 281 SVFDNMSGKDTQAWSAMIVA-Y--ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG-----LVDEGWNYFYSM 352 (558)
Q Consensus 281 ~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~ 352 (558)
.+|++....+...+..+... | ...+++++|+.+|++..+.| +...+..|...|. .| ++++|...|++.
T Consensus 238 ~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 238 ALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 99998883377778888777 4 46789999999999999877 5666767777666 55 899999999887
Q ss_pred hhhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHccC
Q 036003 353 RDKYGIVPGIKHYGCMVDLLGR----AGRLDEAYRFIDELPIKSTPILWRTLLSSCSS----HNNLGLAKQVIERIFELD 424 (558)
Q Consensus 353 ~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 424 (558)
. .-+...+..|...|.. ..++++|.++|++.-...+......|...|.. ..+.++|...|+++.+.+
T Consensus 314 a-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 314 V-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp T-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred h-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 6 3466777778877776 44899999999987334455666777777764 458999999999999988
Q ss_pred CCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 425 DSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 425 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
++........+......++..+|..+.++..+
T Consensus 389 ~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 389 TPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 65433333333222333456777777776654
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=2.9e-14 Score=132.73 Aligned_cols=241 Identities=10% Similarity=-0.082 Sum_probs=185.6
Q ss_pred HCCCccHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 036003 202 RSSRPNEALSLFRELQERNLK---PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278 (558)
Q Consensus 202 ~~g~~~~A~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 278 (558)
..|++++|+..|+++.+.... .+...+..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346788888888888775321 134567778888888888888888888888775 3457778888888999999999
Q ss_pred HHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhh
Q 036003 279 AVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355 (558)
Q Consensus 279 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 355 (558)
|.+.|++..+ .+..+|..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9998888763 36778899999999999999999999999884 455555555555667779999999999888763
Q ss_pred cCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcc
Q 036003 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST-----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429 (558)
Q Consensus 356 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 429 (558)
.+++...+ .++..+...++.++|.+.+++. ...|. ..++..+...+...|++++|...|+++++.+|.+..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 33444444 4777788888999999999886 33332 477888999999999999999999999999987643
Q ss_pred cHHhHHHHHHhcCChHHHHHHH
Q 036003 430 DYVILSNLCARAGRWEDVDYLR 451 (558)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~ 451 (558)
....++...|++++|.+.+
T Consensus 251 ---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 ---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHhhHHHH
Confidence 4466778889999888765
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=4.1e-14 Score=131.59 Aligned_cols=243 Identities=10% Similarity=-0.003 Sum_probs=131.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCC--HHHHHHHHHHHh
Q 036003 162 CTTLINLYAECSDVEAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT--DVTMLSALSSCA 236 (558)
Q Consensus 162 ~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~ 236 (558)
+......+...|++++|...|++..+ .+...|..+...|...|++++|+..+++..+.+-.|+ ...|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 33445566666666666666666543 2334566666666666666666666666655321111 223555566666
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHH
Q 036003 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILM 313 (558)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~ 313 (558)
..|++++|...++++.+.. +.+..++..+...|...|++++|...|++..+. +...|..+...+...+++++|...
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665543 223445555555555666666666555555432 333444444222223355555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCC---HHHHHHHHHhC--
Q 036003 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR---LDEAYRFIDEL-- 388 (558)
Q Consensus 314 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~-- 388 (558)
|++..+. .|+ +...+..+...+...|+ +++|...+++.
T Consensus 165 ~~~a~~~--~p~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 165 FVKVLEL--KPN-----------------------------------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHHHH--STT-----------------------------------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHh--Ccc-----------------------------------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 5554442 122 23333344444444443 33344443333
Q ss_pred --CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcC
Q 036003 389 --PIKST------PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442 (558)
Q Consensus 389 --~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 442 (558)
...|+ ..+|..+...|...|++++|.+.++++++.+|.++.++..+.......+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11122 2466778888888999999999999999999988877777666554443
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=1e-12 Score=122.32 Aligned_cols=219 Identities=12% Similarity=-0.027 Sum_probs=118.7
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhccCCC-CHHhHHHHHHHHHH
Q 036003 229 LSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK----CGRLDDAVSVFDNMSGK-DTQAWSAMIVAYAT 303 (558)
Q Consensus 229 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~ 303 (558)
..+...+...|++++|..+|++..+. -+...+..+...|.. .+++++|...|++..+. +..++..+...|..
T Consensus 10 ~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 86 (273)
T 1ouv_A 10 VGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYS 86 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 33333344444444444444444431 122333334444444 44444444444443322 34445555555555
Q ss_pred ----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh-
Q 036003 304 ----HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH----TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR- 374 (558)
Q Consensus 304 ----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~- 374 (558)
.+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+. + +...+..+...|..
T Consensus 87 g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~ 159 (273)
T 1ouv_A 87 GQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAG 159 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHT
T ss_pred CCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcC
Confidence 555566666666555543 44555555555555 56666666666665542 2 34455555555555
Q ss_pred ---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHh----cCC
Q 036003 375 ---AGRLDEAYRFIDELPIKSTPILWRTLLSSCSS----HNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR----AGR 443 (558)
Q Consensus 375 ---~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 443 (558)
.+++++|.+.|++.-...+...+..+...|.. .+++++|...++++.+.++ +..+..+..+|.. .++
T Consensus 160 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~ 237 (273)
T 1ouv_A 160 RGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRN 237 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccC
Confidence 66666666666655212345556666666666 6777777777777766654 3556666666666 677
Q ss_pred hHHHHHHHHHHHhCCC
Q 036003 444 WEDVDYLRKLMKDRGV 459 (558)
Q Consensus 444 ~~~A~~~~~~m~~~g~ 459 (558)
+++|.+.+++..+.|.
T Consensus 238 ~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 238 EKQAIENFKKGCKLGA 253 (273)
T ss_dssp STTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 7777777776665543
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.57 E-value=2.6e-13 Score=135.85 Aligned_cols=345 Identities=11% Similarity=0.001 Sum_probs=235.9
Q ss_pred HHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccH---HHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 036003 92 TMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEAL---EEGKQLHCFAIKLGLNSNLYVCTTLINL 168 (558)
Q Consensus 92 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 168 (558)
.+...+.+.|++++|+++|++..+.|. ...+..+-..+... |+. ++|...|++..+. +...+..|...
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~--g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~ 78 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGT--RDPAQIKQAEATYRAAADT----SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------------CHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcc--CCCCCHHHHHHHHHHHHhC----CHHHHHHHHHH
Confidence 356677888999999999999988763 33344444444444 667 8999999998864 55556667775
Q ss_pred HHhCC-----ChHHHHHHHhccCC-CCcchHHHHHHHHHHCCCcc---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036003 169 YAECS-----DVEAARRIFENISE-PCVVSYNAIITAYARSSRPN---EALSLFRELQERNLKPTDVTMLSALSSCALLG 239 (558)
Q Consensus 169 ~~~~g-----~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 239 (558)
+...+ +.++|...|++..+ .+...+..|...|...+... ++.+.+......|. ......+...|...+
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQG 155 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHT
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCC
Confidence 65655 78899999988765 45567888888888876544 45555555555442 345556667777777
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhccCCC---CHHhHHHHHHHHHHC----CChHH
Q 036003 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG---RLDDAVSVFDNMSGK---DTQAWSAMIVAYATH----GQGHK 309 (558)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~----~~~~~ 309 (558)
.++++......+.+.-...+...+..|..+|.+.| +.++|++.|++..+. +...+..+...|... +++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 55555444333333322334447778999999999 999999999987643 444456777777654 78999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH-H--HccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcC-----CHHHH
Q 036003 310 SILMFEEMMKAQVSPDEITFLGLLYA-C--SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG-----RLDEA 381 (558)
Q Consensus 310 a~~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A 381 (558)
|+.+|++.. .| +...+..|... + ...+++++|...|++..+. + +...+..|...|. .| ++++|
T Consensus 236 A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 236 AQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 999999988 43 44455555555 3 5689999999999999874 4 6777788888887 55 99999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHh----cCChHHHHHHHHH
Q 036003 382 YRFIDELPIKSTPILWRTLLSSCSS----HNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR----AGRWEDVDYLRKL 453 (558)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 453 (558)
.++|++.- ..++..+..|...|.. ..++++|...|+++.+.+. +.....|+.+|.. ..+.++|...|++
T Consensus 307 ~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 307 EAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ--NSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC--TTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 99999998 7788888888888876 3499999999999988664 5678888888874 4589999999999
Q ss_pred HHhCCCc
Q 036003 454 MKDRGVL 460 (558)
Q Consensus 454 m~~~g~~ 460 (558)
..+.|..
T Consensus 384 A~~~g~~ 390 (452)
T 3e4b_A 384 AKAQDTP 390 (452)
T ss_dssp HHTTCCH
T ss_pred HHHCCCH
Confidence 9888764
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.57 E-value=9.4e-13 Score=122.52 Aligned_cols=226 Identities=8% Similarity=-0.080 Sum_probs=174.2
Q ss_pred CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHHH
Q 036003 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL----LGSLDLGKWIHEYIKKYGLDKYVKVNT 264 (558)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 264 (558)
+..++..+...|...|++++|+..|++..+. -+...+..+...+.. .+++++|..+|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3445666667777777777777777777663 244566666677777 778888888888777765 556666
Q ss_pred HHHHHHHh----cCCHHHHHHHHhccCCC-CHHhHHHHHHHHHH----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036003 265 ALIDMHAK----CGRLDDAVSVFDNMSGK-DTQAWSAMIVAYAT----HGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335 (558)
Q Consensus 265 ~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 335 (558)
.+...|.. .+++++|...|++..+. +..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 77777777 88888888888776543 66778888888888 889999999999988865 55667777777
Q ss_pred HHc----cCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 036003 336 CSH----TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR----AGRLDEAYRFIDELPIKSTPILWRTLLSSCSS- 406 (558)
Q Consensus 336 ~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~- 406 (558)
+.. .+++++|...|++..+. + +...+..+...|.. .+++++|.+.|++.-...+...+..+...|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 777 88999999999988864 2 56777888888888 99999999999887222347778888888988
Q ss_pred ---cCCHHHHHHHHHHHHccCCCC
Q 036003 407 ---HNNLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 407 ---~g~~~~a~~~~~~~~~~~~~~ 427 (558)
.+++++|.+.|+++.+.+|++
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHH
Confidence 899999999999999988764
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=9.3e-13 Score=120.85 Aligned_cols=134 Identities=10% Similarity=-0.068 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD-EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 371 (558)
.|..+...|...|++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..+...
T Consensus 107 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~ 184 (252)
T 2ho1_A 107 VLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADL 184 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHH
Confidence 333444444444444444444444444222232 234444444555555555555555555432 12234445555555
Q ss_pred HhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 372 LGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 372 ~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
+...|++++|..+++++ ... .+...+..+...+...|++++|.+.++++.+..|.++
T Consensus 185 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 185 LYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 55555555555555554 112 2344455555555555666666666666655555543
No 46
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.55 E-value=4.6e-13 Score=119.85 Aligned_cols=193 Identities=15% Similarity=0.074 Sum_probs=94.5
Q ss_pred cchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 036003 190 VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDM 269 (558)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (558)
...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3344555555555555555555555555432 2344455555555555555555555555555543 2234444455555
Q ss_pred HHhc-----------CCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036003 270 HAKC-----------GRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335 (558)
Q Consensus 270 ~~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 335 (558)
+.+. |++++|+..|++..+ .+...|..+...+...|++++|+..|++..+.. .+...+..+..+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 5555 555555555554431 234455555555555566666666665555544 445555555555
Q ss_pred HHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
+...|++++|...|++..+. -+.+...+..+...+.+.|++++|...|++.
T Consensus 161 ~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55566666666666555542 2233445555555555555555555555543
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=7.9e-13 Score=128.29 Aligned_cols=243 Identities=14% Similarity=0.110 Sum_probs=144.1
Q ss_pred HHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 036003 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS-LDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271 (558)
Q Consensus 193 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 271 (558)
|+.+...+.+.|++++|++.|++..+.. +-+...|..+..++...|+ +++|...++++.+.. +-+...|..+..++.
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 3334444444444555555554444431 1233344444444445553 555555555555443 223445555555555
Q ss_pred hcCCHHHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCChHHH--
Q 036003 272 KCGRLDDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH-TGLVDEG-- 345 (558)
Q Consensus 272 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a-- 345 (558)
+.|++++|+..|+++. ..+..+|..+..++...|++++|+..|+++++... -+...|+.+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~ 256 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVL 256 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHH
Confidence 5566666666665544 22555666666666667777777777777766421 145666666666666 4444555
Q ss_pred ---HHHHHHchhhcCCCCChhHHHHHHHHHhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC---------CH
Q 036003 346 ---WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG--RLDEAYRFIDELPIKS-TPILWRTLLSSCSSHN---------NL 410 (558)
Q Consensus 346 ---~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g---------~~ 410 (558)
+..|++.... -+-+...|..+..++.+.| ++++|.+.+.++...| +...+..++..|...| ..
T Consensus 257 ~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~ 334 (382)
T 2h6f_A 257 EREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDIL 334 (382)
T ss_dssp HHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHH
Confidence 4666666642 2334567777777777776 5777777777763334 4567777777777763 25
Q ss_pred HHHHHHHHHH-HccCCCCcccHHhHHHHHHh
Q 036003 411 GLAKQVIERI-FELDDSHGGDYVILSNLCAR 440 (558)
Q Consensus 411 ~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 440 (558)
++|.++++++ .+.+|.....|..++..+..
T Consensus 335 ~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 335 NKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 8899999998 88888887778777766644
No 48
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=9.7e-14 Score=137.55 Aligned_cols=230 Identities=11% Similarity=-0.009 Sum_probs=142.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHh----C-CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---------CHHh
Q 036003 228 MLSALSSCALLGSLDLGKWIHEYIKKY----G-LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---------DTQA 293 (558)
Q Consensus 228 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~ 293 (558)
+..+...+...|++++|...+++..+. + .+.....+..+...|...|++++|...|++..+. ...+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 334444444444444444444444322 0 0112334444555555555555555555443211 2334
Q ss_pred HHHHHHHHHHCCC-----------------hHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHH
Q 036003 294 WSAMIVAYATHGQ-----------------GHKSILMFEEMMKA----QVSP-DEITFLGLLYACSHTGLVDEGWNYFYS 351 (558)
Q Consensus 294 ~~~li~~~~~~~~-----------------~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 351 (558)
+..+...|...|+ +++|+..+++..+. +..+ ....+..+...+...|++++|...+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5556666666666 66666666655431 1111 124666677777888888888888877
Q ss_pred chhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036003 352 MRDKYGIVPG----IKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKST----PILWRTLLSSCSSHNNLGLAKQVIER 419 (558)
Q Consensus 352 ~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 419 (558)
..+...-.++ ...+..+...|...|++++|.+.+++. +...+ ..++..+...+...|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7653111111 236777888888888888888888775 11111 45777888899999999999999999
Q ss_pred HHccCCCC------cccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 420 IFELDDSH------GGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 420 ~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
+++..+.. ..++..++.+|.+.|++++|.+.+++..+.
T Consensus 329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 88765332 347888999999999999999999988763
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=7.9e-13 Score=121.31 Aligned_cols=197 Identities=8% Similarity=0.015 Sum_probs=168.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036003 260 VKVNTALIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336 (558)
Q Consensus 260 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 336 (558)
...+..+...+...|++++|.+.|+++. ..+...|..+...|...|++++|...++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4556667778888888888888888765 2367788889999999999999999999998853 23677888899999
Q ss_pred HccCChHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHH
Q 036003 337 SHTGLVDEGWNYFYSMRDKYGIVP-GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLA 413 (558)
Q Consensus 337 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a 413 (558)
...|++++|.++++++... +..| +...+..+...+...|++++|.+.|++. .. ..+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999862 3444 5678888999999999999999999987 22 33678899999999999999999
Q ss_pred HHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCC
Q 036003 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
...++++++..|.+...+..++.+|...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999998753
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=1.9e-13 Score=124.63 Aligned_cols=145 Identities=13% Similarity=0.030 Sum_probs=84.8
Q ss_pred CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHH
Q 036003 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369 (558)
Q Consensus 290 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 369 (558)
+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+.
T Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~ 166 (243)
T 2q7f_A 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFG 166 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHH
Confidence 34444555555555555556666565555532 224455555566666666666666666666542 223455566666
Q ss_pred HHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHH
Q 036003 370 DLLGRAGRLDEAYRFIDEL-P-IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
..+.+.|++++|.+.|+++ . ...+..++..+..++...|++++|.+.++++++..|.++.++..+...
T Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 167 MCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 6666666666666666655 1 123455666677777777777777777777777777666555554443
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=5.2e-13 Score=124.21 Aligned_cols=241 Identities=11% Similarity=-0.018 Sum_probs=160.5
Q ss_pred hcCCCchHHHHHHHHhHHCCCC---CCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 036003 98 SRSKTPIRAIFLFVELLNSGLL---PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174 (558)
Q Consensus 98 ~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 174 (558)
...|++++|+..|+++.+.... .+...+..+...+... |++++|...++++++.. +.+..++..+...|...|+
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSL--GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccC
Confidence 3456778888888888765321 1345666677777777 88888888888888765 4467777888888888888
Q ss_pred hHHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 036003 175 VEAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251 (558)
Q Consensus 175 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 251 (558)
+++|...|++..+ .+..+|..+...|.+.|++++|...|+++.+. .|+.......+..+...|++++|...+...
T Consensus 93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8888888887764 35667788888888888888888888888764 354444444555556678888888888777
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-------HHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC
Q 036003 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD-------TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324 (558)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 324 (558)
.... +++...+. ++..+...++.++|...++.....+ ...|..+...|...|++++|...|++..+. .|
T Consensus 171 ~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p 246 (275)
T 1xnf_A 171 FEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NV 246 (275)
T ss_dssp HHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CC
T ss_pred HhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cc
Confidence 6654 33344443 6666777777777887777766542 355666777777777777777777777663 34
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHH
Q 036003 325 DEITFLGLLYACSHTGLVDEGWNYF 349 (558)
Q Consensus 325 ~~~~~~~ll~~~~~~g~~~~a~~~~ 349 (558)
+. +.....++...|++++|.+.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 22 112233445556666665544
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=1.3e-12 Score=117.35 Aligned_cols=195 Identities=11% Similarity=0.067 Sum_probs=121.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036003 260 VKVNTALIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336 (558)
Q Consensus 260 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 336 (558)
...+..+...+...|++++|.+.|+.+. ..+...|..+...|...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 3344445555555555555555555443 1234455666666666666666666666666532 22455666666666
Q ss_pred Hcc-CChHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHH
Q 036003 337 SHT-GLVDEGWNYFYSMRDKYGIVP-GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGL 412 (558)
Q Consensus 337 ~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~ 412 (558)
... |++++|...++++.+. +..| +...+..+...+...|++++|.+.++++ ... .+...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 667 7777777777666651 2222 2455666666777777777777777665 222 245666777777777777777
Q ss_pred HHHHHHHHHccCC-CCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 413 AKQVIERIFELDD-SHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 413 a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
|...++++++..| .+...+..+...+...|+.++|..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7777777777777 6666677777777777777777777777654
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=2.7e-12 Score=119.21 Aligned_cols=228 Identities=10% Similarity=-0.074 Sum_probs=178.9
Q ss_pred cccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC--CCcc----hHHH
Q 036003 122 DYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE--PCVV----SYNA 195 (558)
Q Consensus 122 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~ 195 (558)
...+......+... |++++|...++++++.. +.+...+..+...|.+.|++++|...|++..+ ++.. +|..
T Consensus 3 ~~~~~~~a~~~~~~--~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKN--NNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTT--TCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 34555666777777 99999999999999875 44566888899999999999999999998765 2322 3889
Q ss_pred HHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036003 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275 (558)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 275 (558)
+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...++
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998863 4466789999999999999999999999988763 4456677777734444569
Q ss_pred HHHHHHHHhccCC---CCHHhHHHHHHHHHHCCC---hHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHccCCh
Q 036003 276 LDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQ---GHKSILMFEEMMKAQ-VSPD------EITFLGLLYACSHTGLV 342 (558)
Q Consensus 276 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g-~~p~------~~~~~~ll~~~~~~g~~ 342 (558)
+++|.+.|+++.+ .+...+..+...+...|+ +++|...+++..+.. -.|+ ...|..+...|...|++
T Consensus 158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 9999999998763 356778888888888888 888888888877632 1133 14566677777788888
Q ss_pred HHHHHHHHHchh
Q 036003 343 DEGWNYFYSMRD 354 (558)
Q Consensus 343 ~~a~~~~~~~~~ 354 (558)
++|.+.|+++.+
T Consensus 238 ~~A~~~~~~al~ 249 (272)
T 3u4t_A 238 VKADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888888775
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=2.5e-12 Score=115.44 Aligned_cols=204 Identities=9% Similarity=-0.093 Sum_probs=137.2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHHHHH
Q 036003 226 VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIVAYA 302 (558)
Q Consensus 226 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 302 (558)
..+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.|+++. ..+..++..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 344445555555555555555555555543 2234455555666666666666666665543 224556667777777
Q ss_pred HC-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 036003 303 TH-GQGHKSILMFEEMMKAQVSPD-EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380 (558)
Q Consensus 303 ~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 380 (558)
.. |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..+...+.+.|++++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHH
Confidence 77 777788887777776333343 456777777788888888888888887763 23356777788888888888888
Q ss_pred HHHHHHhC-CC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHH
Q 036003 381 AYRFIDEL-PI-K-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432 (558)
Q Consensus 381 A~~~~~~~-~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 432 (558)
|.++++++ .. + .+...+..+...+...|+.++|..+++.+.+..|.++....
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 88888876 22 2 45666777777788888999999888888888887765543
No 55
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=8.6e-12 Score=125.96 Aligned_cols=319 Identities=10% Similarity=-0.026 Sum_probs=180.6
Q ss_pred cccHHHHHHHHhcCCCchHHHHHHHHhHHC-----C--CCC-CcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhC----
Q 036003 87 IVLFNTMARGYSRSKTPIRAIFLFVELLNS-----G--LLP-DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG---- 154 (558)
Q Consensus 87 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g---- 154 (558)
+..||.|...+...|++++|++.|++..+. + ..| ...+|+.+..++... |++++|...++++.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~--g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM--GRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHhHhcc
Confidence 445777777777778888888877776542 1 112 234566666677777 77777777777665531
Q ss_pred --C-CChHHHHHHHHHHHHhC--CChHHHHHHHhccCC--CC-cchHHHHHHH---HHHCCCccHHHHHHHHHHHCCCCC
Q 036003 155 --L-NSNLYVCTTLINLYAEC--SDVEAARRIFENISE--PC-VVSYNAIITA---YARSSRPNEALSLFRELQERNLKP 223 (558)
Q Consensus 155 --~-~~~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~~--~~-~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~p 223 (558)
. .....++..+..++.+. +++++|...|++..+ |+ ...+..+... +...++.++|++.+++..+.. +.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 0 11234444444444433 456777777766653 32 3333333333 334566666777776665542 22
Q ss_pred CHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHH
Q 036003 224 TDVTMLSALSSCAL----LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSA 296 (558)
Q Consensus 224 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 296 (558)
+...+..+...+.. .++.++|.+++++..... +.+..++..+...|...|++++|...|++..+ .+..+|..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 33444444333332 345566666666665553 33445555566666666666666666665542 23444555
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcC
Q 036003 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376 (558)
Q Consensus 297 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 376 (558)
+..+|...+.... ... . ..........+..+.|...++..... -+.+...+..+...|...|
T Consensus 287 lg~~y~~~~~~~~---------~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 287 IGCCYRAKVFQVM---------NLR-E------NGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhh---------hHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhc
Confidence 5444432111000 000 0 00000011123467788888887763 3445677888999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHH----HHHHHHH-HHHhcCCHHHHHHHHHHHHccCCCC
Q 036003 377 RLDEAYRFIDEL-PIKSTPI----LWRTLLS-SCSSHNNLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 377 ~~~~A~~~~~~~-~~~~~~~----~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~ 427 (558)
++++|.+.|++. ...|+.. .+..+.. .....|++++|+..|++++++.|.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~ 405 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS 405 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 999999999986 3344432 2333333 2346799999999999999999876
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=2.3e-13 Score=124.05 Aligned_cols=197 Identities=9% Similarity=0.064 Sum_probs=155.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036003 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335 (558)
Q Consensus 259 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 335 (558)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 345566677778888888888888887753 367788888999999999999999999998853 3367888889999
Q ss_pred HHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHH
Q 036003 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLA 413 (558)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a 413 (558)
+...|++++|.+.++++.+. .+.+...+..+...+.+.|++++|.+.++++ .. ..+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999874 3456788999999999999999999999987 22 34678899999999999999999
Q ss_pred HHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCC
Q 036003 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
...++++++..|.++.++..++.+|...|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999998743
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=3.7e-13 Score=132.94 Aligned_cols=260 Identities=11% Similarity=0.019 Sum_probs=140.3
Q ss_pred HHHHHHHCCCccHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHh----CCCC-chhHHHHH
Q 036003 196 IITAYARSSRPNEALSLFRELQERNLKPT----DVTMLSALSSCALLGSLDLGKWIHEYIKKY----GLDK-YVKVNTAL 266 (558)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l 266 (558)
....+...|++++|...|++..+.+ +.+ ...+..+...+...|++++|...++++... +..+ ...++..+
T Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 93 (406)
T 3sf4_A 15 EGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 93 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 3334444444444444444444331 111 123334444444444444444444443221 1111 12334444
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC-----C----HHhHHHHHHHHHHCCC--------------------hHHHHHHHHHH
Q 036003 267 IDMHAKCGRLDDAVSVFDNMSGK-----D----TQAWSAMIVAYATHGQ--------------------GHKSILMFEEM 317 (558)
Q Consensus 267 ~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m 317 (558)
...|...|++++|...+++..+. + ..++..+...|...|+ +++|...+++.
T Consensus 94 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 173 (406)
T 3sf4_A 94 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 55555555555555555443311 1 2245555556666666 66666666554
Q ss_pred HHC----CCCCC-HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 318 MKA----QVSPD-EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG----IKHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 318 ~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
.+. +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...+++.
T Consensus 174 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 253 (406)
T 3sf4_A 174 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 431 11111 235666666777777777777777766542111111 235666777777777777777777665
Q ss_pred ----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC------cccHHhHHHHHHhcCChHHHHHHHHHH
Q 036003 389 ----PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH------GGDYVILSNLCARAGRWEDVDYLRKLM 454 (558)
Q Consensus 389 ----~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (558)
+..++ ..++..+...+...|++++|.+.++++++..+.. ..++..++.+|...|++++|.+.+++.
T Consensus 254 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11112 3466677777778888888888888877654322 346777777888888888888887776
Q ss_pred Hh
Q 036003 455 KD 456 (558)
Q Consensus 455 ~~ 456 (558)
.+
T Consensus 334 l~ 335 (406)
T 3sf4_A 334 LE 335 (406)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=4.6e-13 Score=128.31 Aligned_cols=260 Identities=11% Similarity=0.023 Sum_probs=164.2
Q ss_pred HHHHHHCCCccHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHh----CCC-CchhHHHHHH
Q 036003 197 ITAYARSSRPNEALSLFRELQERNLKPT----DVTMLSALSSCALLGSLDLGKWIHEYIKKY----GLD-KYVKVNTALI 267 (558)
Q Consensus 197 i~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~ 267 (558)
...+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|..++++..+. +.. ....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 344455555555555555554432 111 134444555555555555555555544322 111 1234455556
Q ss_pred HHHHhcCCHHHHHHHHhccCCC-----C----HHhHHHHHHHHHHCCC--------------------hHHHHHHHHHHH
Q 036003 268 DMHAKCGRLDDAVSVFDNMSGK-----D----TQAWSAMIVAYATHGQ--------------------GHKSILMFEEMM 318 (558)
Q Consensus 268 ~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~ 318 (558)
..|...|++++|...+++..+. + ..++..+...|...|+ +++|...+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 6666666666666666554321 1 2356666666777777 777777776654
Q ss_pred HC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 036003 319 KA----QVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG----IKHYGCMVDLLGRAGRLDEAYRFIDEL- 388 (558)
Q Consensus 319 ~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~- 388 (558)
.. +..| ....+..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 31 1111 1246667777888888888888888877653111111 336778888889999999998888875
Q ss_pred ---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC------cccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 389 ---PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH------GGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 389 ---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
+..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|.+.|++++|...+++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 11122 4567788889999999999999999998765332 3468889999999999999999999887
Q ss_pred hC
Q 036003 456 DR 457 (558)
Q Consensus 456 ~~ 457 (558)
+.
T Consensus 331 ~~ 332 (338)
T 3ro2_A 331 EI 332 (338)
T ss_dssp HC
T ss_pred HH
Confidence 63
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=1.6e-13 Score=135.60 Aligned_cols=288 Identities=11% Similarity=0.017 Sum_probs=172.8
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCChHHHHHHHhccCC-----C----Ccch
Q 036003 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN---LYVCTTLINLYAECSDVEAARRIFENISE-----P----CVVS 192 (558)
Q Consensus 125 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~----~~~~ 192 (558)
+...-..+... |++++|...++++++...... ..++..+...|...|++++|...|++... . ...+
T Consensus 12 l~~~g~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 12 LALEGERLCKS--GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHh--ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 33444455555 777777777777776642211 24566666666677777777666655432 1 1224
Q ss_pred HHHHHHHHHHCCCccHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 036003 193 YNAIITAYARSSRPNEALSLFRELQERNL-KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271 (558)
Q Consensus 193 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 271 (558)
+..+...|...|++++|...+++..+... .++. .....++..+...|.
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~ 138 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNVYH 138 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHHHHH
Confidence 44555555555555555555555433200 0010 001223344444455
Q ss_pred hcCC--------------------HHHHHHHHhccCC-------C--CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCC
Q 036003 272 KCGR--------------------LDDAVSVFDNMSG-------K--DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322 (558)
Q Consensus 272 ~~g~--------------------~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 322 (558)
..|+ +++|...+++..+ . ...++..+...|...|++++|...+++..+...
T Consensus 139 ~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 139 AKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred HcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5555 5555444443321 0 233566677777777777777777777654210
Q ss_pred -CCC----HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC----C
Q 036003 323 -SPD----EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG----IKHYGCMVDLLGRAGRLDEAYRFIDEL----P 389 (558)
Q Consensus 323 -~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~ 389 (558)
.++ ..++..+...+...|++++|...+++......-.++ ..++..+...|...|++++|.+.+++. +
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 112 236777777888888888888888877643111111 456778888888999999998888876 1
Q ss_pred CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC------CCcccHHhHHHHHHhcCChH
Q 036003 390 IKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDD------SHGGDYVILSNLCARAGRWE 445 (558)
Q Consensus 390 ~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~ 445 (558)
..++ ..++..+...+...|++++|.+.++++++..+ ....++..+..+|...|+..
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 1122 45778888999999999999999999887642 22446777888888887753
No 60
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=1.4e-12 Score=126.59 Aligned_cols=228 Identities=9% Similarity=0.033 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhccCC---CCHHhHHHHHHH
Q 036003 225 DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR-LDDAVSVFDNMSG---KDTQAWSAMIVA 300 (558)
Q Consensus 225 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~ 300 (558)
...|..+..++.+.|++++|...++++.+.. +-+...|+.+..++...|+ +++|+..|+++.. .+...|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3467778888889999999999999999876 4567888899999999997 9999999998863 478899999999
Q ss_pred HHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh-cCCHH
Q 036003 301 YATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR-AGRLD 379 (558)
Q Consensus 301 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~ 379 (558)
+...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++.+. -+.+...|+.+..++.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999853 226788999999999999999999999999973 34467899999999999 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcC--------
Q 036003 380 EA-----YRFIDEL-PIKS-TPILWRTLLSSCSSHN--NLGLAKQVIERIFELDDSHGGDYVILSNLCARAG-------- 442 (558)
Q Consensus 380 ~A-----~~~~~~~-~~~~-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 442 (558)
+| ++.|++. ...| +...|+.+...+...| ++++|.+.++++ +.+|+++..+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777776 3344 6788999999999888 689999999998 888999999999999999874
Q ss_pred C-hHHHHHHHHHH-HhC
Q 036003 443 R-WEDVDYLRKLM-KDR 457 (558)
Q Consensus 443 ~-~~~A~~~~~~m-~~~ 457 (558)
+ +++|.++++++ .+.
T Consensus 332 ~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 332 DILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 2 58999999998 553
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=3.3e-12 Score=110.94 Aligned_cols=164 Identities=13% Similarity=0.058 Sum_probs=129.6
Q ss_pred CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHH
Q 036003 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368 (558)
Q Consensus 290 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 368 (558)
+...|..+...|.+.|++++|+..|++..+. .| +...+..+..++.+.|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4566777888888888888888888887774 34 4567777788888888888888888887753 33456667777
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHH
Q 036003 369 VDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWED 446 (558)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 446 (558)
...+...++++.|.+.+.+. .. +.+...+..+...+...|++++|++.|+++++.+|.++.+|..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 77888888888888888776 22 33567788888888899999999999999999999888889999999999999999
Q ss_pred HHHHHHHHHhC
Q 036003 447 VDYLRKLMKDR 457 (558)
Q Consensus 447 A~~~~~~m~~~ 457 (558)
|.+.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999888764
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=5.6e-13 Score=132.03 Aligned_cols=233 Identities=12% Similarity=0.018 Sum_probs=146.3
Q ss_pred HHHHHHHHHHCCCccHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh----C-CCCchhH
Q 036003 193 YNAIITAYARSSRPNEALSLFRELQER----NL-KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY----G-LDKYVKV 262 (558)
Q Consensus 193 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 262 (558)
|..+...|...|++++|+..+++..+. +- +.....+..+...+...|++++|...++++.+. + .+....+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 444444444445555554444443321 10 112234444555555556666665555554432 1 1112345
Q ss_pred HHHHHHHHHhcCC-----------------HHHHHHHHhccCCC---------CHHhHHHHHHHHHHCCChHHHHHHHHH
Q 036003 263 NTALIDMHAKCGR-----------------LDDAVSVFDNMSGK---------DTQAWSAMIVAYATHGQGHKSILMFEE 316 (558)
Q Consensus 263 ~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~ 316 (558)
+..+...|...|+ +++|.+.+++..+. ...++..+...|...|++++|+..+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5556666666666 66666666554321 234677778888888888888888887
Q ss_pred HHHCCC-CCC----HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC----ChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 036003 317 MMKAQV-SPD----EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP----GIKHYGCMVDLLGRAGRLDEAYRFIDE 387 (558)
Q Consensus 317 m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~ 387 (558)
..+... .++ ...+..+...+...|++++|...+++......-.. ...++..+...|...|++++|.+++++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 765211 012 23677788888899999999999888775311111 146778888899999999999999987
Q ss_pred C----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 036003 388 L----PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425 (558)
Q Consensus 388 ~----~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 425 (558)
. +..++ ..++..+...|...|++++|.+.+++++++.+
T Consensus 329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 6 11112 35778888999999999999999999987654
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=5.7e-13 Score=134.23 Aligned_cols=192 Identities=9% Similarity=-0.016 Sum_probs=153.8
Q ss_pred chhHHHHHHHHHHhcCCH-HHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036003 259 YVKVNTALIDMHAKCGRL-DDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334 (558)
Q Consensus 259 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 334 (558)
+...+..+...|...|++ ++|++.|++.. ..+..+|..+..+|...|++++|+..|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 445555566666666666 66666666543 225667777888888888888888888888874 577778888888
Q ss_pred HHHcc---------CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhc--------CCHHHHHHHHHhC-CCCC----
Q 036003 335 ACSHT---------GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA--------GRLDEAYRFIDEL-PIKS---- 392 (558)
Q Consensus 335 ~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~-~~~~---- 392 (558)
.+... |++++|.+.|++..+. .+.+...|..+..+|... |++++|++.|++. ...|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 88888 9999999999998863 344577888888899888 8999999999987 3344
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHH
Q 036003 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454 (558)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (558)
+...|..+..+|...|++++|.+.|+++++.+|.++.++..+..++...|++++|.+.++++
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77899999999999999999999999999999999999999999999999999998765433
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=1.7e-12 Score=124.36 Aligned_cols=264 Identities=11% Similarity=0.041 Sum_probs=152.7
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCChHHHHHHHhccCC-----C----CcchHHHHH
Q 036003 130 KACACVGAEALEEGKQLHCFAIKLGLNSN---LYVCTTLINLYAECSDVEAARRIFENISE-----P----CVVSYNAII 197 (558)
Q Consensus 130 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li 197 (558)
..+... |++++|...++++++...... ...+..+...|...|++++|...+++..+ . ...++..+.
T Consensus 13 ~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 13 ERLCKS--GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHh--ccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 344445 677777777777666532111 24555666666666666666666655432 1 122344455
Q ss_pred HHHHHCCCccHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-
Q 036003 198 TAYARSSRPNEALSLFRELQERNL-KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR- 275 (558)
Q Consensus 198 ~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 275 (558)
..|...|++++|...+++..+... .++.. ....++..+...|...|+
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~~~~~ 139 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYHAKGKS 139 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHHHcCcc
Confidence 555555555555555554432100 01100 001233444444555555
Q ss_pred -------------------HHHHHHHHhccCC-------C--CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCC-CCC-
Q 036003 276 -------------------LDDAVSVFDNMSG-------K--DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV-SPD- 325 (558)
Q Consensus 276 -------------------~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~- 325 (558)
+++|.+.+++..+ + ...++..+...+...|++++|...+++..+... .++
T Consensus 140 ~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 219 (338)
T 3ro2_A 140 FGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 219 (338)
T ss_dssp SSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh
Confidence 5555544444321 0 133566667777777777777777777654210 011
Q ss_pred ---HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-
Q 036003 326 ---EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG----IKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKST- 393 (558)
Q Consensus 326 ---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~- 393 (558)
..++..+...+...|++++|...+++......-..+ ..++..+...|...|++++|...+++. +..++
T Consensus 220 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 299 (338)
T 3ro2_A 220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 236677777788888888888888877643111111 456777888888999999998888776 11112
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 394 ---PILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 394 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
..++..+...+...|++++|...++++++..+.
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 346778888999999999999999999877643
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=1.3e-12 Score=128.23 Aligned_cols=162 Identities=10% Similarity=0.045 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhc---CC-CCChh
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMKA----QVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKY---GI-VPGIK 363 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~-~~~~~ 363 (558)
+++.+...|...|++++|+..|++..+. +-.+ ...++..+..+|...|++++|...+++..+.. +. +....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 3444444444455555555444444321 0000 01244444455555555555555555444310 11 11233
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC---HHHHHHHHHHHHhcCC---HHHHHHHHHHHHccCCCCcccHHh
Q 036003 364 HYGCMVDLLGRAGRLDEAYRFIDEL----PIKST---PILWRTLLSSCSSHNN---LGLAKQVIERIFELDDSHGGDYVI 433 (558)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~---~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~ 433 (558)
++..+...|.+.|++++|.+.+++. +..++ ...+..+...+...|+ +++|..++++. ...+.....+..
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 344 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 4445555555555555555555443 00011 1223344445555555 44444444444 111222334555
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 036003 434 LSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 434 l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
++..|...|++++|...+++..
T Consensus 345 la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 6666666666666666665554
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.40 E-value=1.5e-11 Score=120.56 Aligned_cols=229 Identities=8% Similarity=0.045 Sum_probs=159.2
Q ss_pred HHHHHHHCCCccHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC------CCchhHHH
Q 036003 196 IITAYARSSRPNEALSLFRELQER----NLKP-TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL------DKYVKVNT 264 (558)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 264 (558)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|++++|...+.+..+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344455666666666666665442 1111 223556666666677777777777666654311 11134566
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCC---------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHC----CCCC-CHHHHH
Q 036003 265 ALIDMHAKCGRLDDAVSVFDNMSGK---------DTQAWSAMIVAYATHGQGHKSILMFEEMMKA----QVSP-DEITFL 330 (558)
Q Consensus 265 ~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~ 330 (558)
.+...|...|++++|...|++..+. ...++..+...|...|++++|+..+++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6777788888888888777765421 1246788888899999999999999888762 2323 356788
Q ss_pred HHHHHHHccCChHHHHHHHHHchhhcC---CCCChhHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 036003 331 GLLYACSHTGLVDEGWNYFYSMRDKYG---IVPGIKHYGCMVDLLGRAGR---LDEAYRFIDELPIKST-PILWRTLLSS 403 (558)
Q Consensus 331 ~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~ 403 (558)
.+...+...|++++|...+++...... -+.....+..+...|...|+ +++|..++++.+..|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 888999999999999999988775311 11122335678888999999 8999999999854443 3567788999
Q ss_pred HHhcCCHHHHHHHHHHHHccC
Q 036003 404 CSSHNNLGLAKQVIERIFELD 424 (558)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~ 424 (558)
|...|++++|...++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998754
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.40 E-value=8.7e-10 Score=114.21 Aligned_cols=213 Identities=7% Similarity=-0.042 Sum_probs=109.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC
Q 036003 210 LSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK-WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG 288 (558)
Q Consensus 210 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 288 (558)
..+|++.... ++-+...|...+..+...|+.++|. .++++..... +.+...|-.++....+.|+++.|.++|+.+..
T Consensus 329 ~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 329 TYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445554443 2334445555555555556666664 6666665432 33444455555556666666666666665542
Q ss_pred -------------C------------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHcc-CC
Q 036003 289 -------------K------------DTQAWSAMIVAYATHGQGHKSILMFEEMMKA-QVSPDEITFLGLLYACSHT-GL 341 (558)
Q Consensus 289 -------------~------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~-g~ 341 (558)
| ....|...+....+.|..+.|..+|.+..+. +. +....|...+..-.+. ++
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCC
Confidence 1 0123555555555556666666666666553 11 1112222211111222 33
Q ss_pred hHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHH
Q 036003 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS----TPILWRTLLSSCSSHNNLGLAKQV 416 (558)
Q Consensus 342 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~a~~~ 416 (558)
.+.|..+|+...+. .+.+...+...++.....|+.+.|..+|++. ...| ....|...+..-...|+.+.+..+
T Consensus 486 ~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 486 TKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp CHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666666666653 2334445555555555666666666666664 2122 224555555555666666666666
Q ss_pred HHHHHccCCCC
Q 036003 417 IERIFELDDSH 427 (558)
Q Consensus 417 ~~~~~~~~~~~ 427 (558)
.+++.+..|++
T Consensus 564 ~~R~~~~~P~~ 574 (679)
T 4e6h_A 564 EKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHSTTC
T ss_pred HHHHHHhCCCC
Confidence 66666666554
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=1.1e-12 Score=124.40 Aligned_cols=241 Identities=10% Similarity=0.028 Sum_probs=115.3
Q ss_pred chHHHHHHHHHHCCCccHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh------CC-
Q 036003 191 VSYNAIITAYARSSRPNEALSLFRELQER-------NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY------GL- 256 (558)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~- 256 (558)
.++..+...+...|++++|..+|+++.+. ..+.....+..+...+...|++++|..+++++.+. +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45667777777777777777777776652 11223445666666777777777777777766543 11
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHC-----
Q 036003 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-----------DTQAWSAMIVAYATHGQGHKSILMFEEMMKA----- 320 (558)
Q Consensus 257 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----- 320 (558)
+....++..+...|...|++++|...|++..+. ....+..+...+...|++++|+..++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 222444555556666666666666655544311 1223444444555555555555555544432
Q ss_pred -CCCCC-HHHHHHHHHHHHccCChHHHHHHHHHchhhc------CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 036003 321 -QVSPD-EITFLGLLYACSHTGLVDEGWNYFYSMRDKY------GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392 (558)
Q Consensus 321 -g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 392 (558)
+..|+ ..++..+...+...|++++|...++++.+.. ...+.......
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------- 242 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------------- 242 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-------------------------
Confidence 11111 1234444444444445555544444444310 00000000000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
....+..+...+...+.+.++...+++.....|....++..++.+|.+.|++++|.+.+++..+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0111222223333445555566666666666666666677777777777777777777766543
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.39 E-value=8.8e-12 Score=108.24 Aligned_cols=167 Identities=10% Similarity=0.065 Sum_probs=131.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036003 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335 (558)
Q Consensus 259 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 335 (558)
+..+|..+...|.+.|++++|++.|++.. ..+..+|..+..+|.+.|++++|+..+++..... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 45566777777777777777777777764 2366778888888888888888888888887743 2245667777778
Q ss_pred HHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 036003 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLA 413 (558)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a 413 (558)
+...++++.|...+.+... ..+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8888999999999888876 33446778888899999999999999999887 3333 678899999999999999999
Q ss_pred HHHHHHHHccCCCCc
Q 036003 414 KQVIERIFELDDSHG 428 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~ 428 (558)
.+.|+++++.+|.++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999988753
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=1.6e-10 Score=109.42 Aligned_cols=218 Identities=11% Similarity=0.040 Sum_probs=125.8
Q ss_pred cHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccCCh-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 036003 207 NEALSLFRELQERNLKPTDVTMLSALSSCA-------LLGSL-------DLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272 (558)
Q Consensus 207 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 272 (558)
++|..+|++..+.. +-+...|..++..+. +.|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45555665555431 234444444444443 23554 5666666666652112334456666666666
Q ss_pred cCCHHHHHHHHhccCCC---CHH-hHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCChHHHHH
Q 036003 273 CGRLDDAVSVFDNMSGK---DTQ-AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC-SHTGLVDEGWN 347 (558)
Q Consensus 273 ~g~~~~A~~~~~~~~~~---~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~ 347 (558)
.|++++|.++|++..+. +.. .|..++..+.+.|++++|..+|++..+... ++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666665432 233 566666666666777777777777666421 2233333222221 12577777777
Q ss_pred HHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036003 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-P---IKS--TPILWRTLLSSCSSHNNLGLAKQVIERIF 421 (558)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (558)
+|++..+. .+.+...|..++..+.+.|++++|..+|++. . ..| ....|..++..+...|+.+.|..++++++
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777653 2335566677777777777777777777765 1 233 34566667777777777777777777777
Q ss_pred ccCCCCc
Q 036003 422 ELDDSHG 428 (558)
Q Consensus 422 ~~~~~~~ 428 (558)
+..|.+.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 7776654
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=2.6e-12 Score=121.72 Aligned_cols=249 Identities=10% Similarity=0.067 Sum_probs=170.3
Q ss_pred CChHHHHHHHHHHHHhCCChHHHHHHHhccCC--------C---CcchHHHHHHHHHHCCCccHHHHHHHHHHHC-----
Q 036003 156 NSNLYVCTTLINLYAECSDVEAARRIFENISE--------P---CVVSYNAIITAYARSSRPNEALSLFRELQER----- 219 (558)
Q Consensus 156 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 219 (558)
+.+..++..+...|...|++++|..+|+++.+ . ...++..+...|...|++++|...+++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 34567889999999999999999999988764 1 2346788899999999999999999998764
Q ss_pred -CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-
Q 036003 220 -NLKP-TDVTMLSALSSCALLGSLDLGKWIHEYIKKY------GL-DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK- 289 (558)
Q Consensus 220 -~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 289 (558)
+-.| ....+..+...+...|++++|..+++++.+. +. +.....+..+...|...|++++|.++|++..+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2222 3557888899999999999999999998765 22 234567888999999999999999999887431
Q ss_pred ----------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCC
Q 036003 290 ----------DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359 (558)
Q Consensus 290 ----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 359 (558)
...++..+...|...|++++|...++++.+.. |+. .+..+ -.......
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~---~~~~~~~~---------------- 241 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER-EFGSV---DDENKPIW---------------- 241 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH-HHC---------CCHH----------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh-cCCCC---CcchHHHH----------------
Confidence 34568889999999999999999999998731 110 00000 00000000
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELP-IKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
.....+..+...+...+.+.+|...+.... ..| +..++..+..+|...|++++|.+.+++++++.|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 011122233334445566666666666652 223 3467788888899999999999999988877653
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.36 E-value=6.7e-10 Score=108.26 Aligned_cols=259 Identities=12% Similarity=-0.003 Sum_probs=150.8
Q ss_pred HHHHHCCCccHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHhCC---CC--chhHHHHHHH
Q 036003 198 TAYARSSRPNEALSLFRELQERNLKPTDV----TMLSALSSCALLGSLDLGKWIHEYIKKYGL---DK--YVKVNTALID 268 (558)
Q Consensus 198 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~ 268 (558)
..+...|++++|...+++.....-..+.. .+..+...+...|++++|...+++...... .+ ....+..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445566666666666555432111111 233444555566666666666665543210 01 0122344566
Q ss_pred HHHhcCCHHHHHHHHhccCC----------C-CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCC--C--CHHHHHHHH
Q 036003 269 MHAKCGRLDDAVSVFDNMSG----------K-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS--P--DEITFLGLL 333 (558)
Q Consensus 269 ~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~~~~~ll 333 (558)
.+...|++++|.+.+++... + ....+..+...+...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 66667777777666665431 1 1234555666777777888887777776653211 1 234566677
Q ss_pred HHHHccCChHHHHHHHHHchhhcCCCCChhHHH-----HHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHH
Q 036003 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG-----CMVDLLGRAGRLDEAYRFIDEL-PIKST-----PILWRTLLS 402 (558)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~~~l~~ 402 (558)
..+...|++++|...+++......-......+. ..+..+...|++++|..++++. ...+. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 777778888888888877764311111111111 2334466788888888888876 21121 234566777
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCCC------cccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 403 SCSSHNNLGLAKQVIERIFELDDSH------GGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 403 ~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
.+...|++++|...++++.+..+.. ...+..+..+|...|++++|...+++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7888888888888888876654221 12566677778888888888888877654
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=9e-11 Score=111.14 Aligned_cols=212 Identities=9% Similarity=0.046 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHhccCC---C-CHHhHHHHHHHHHH
Q 036003 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHA-------KCGRL-------DDAVSVFDNMSG---K-DTQAWSAMIVAYAT 303 (558)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 303 (558)
++|..+|+++.... +.+...|..++..+. +.|++ ++|..+|++..+ | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888888888764 556777877777775 35886 899999998764 2 56789999999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHh-hcCCHHH
Q 036003 304 HGQGHKSILMFEEMMKAQVSPDE-I-TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG-RAGRLDE 380 (558)
Q Consensus 304 ~~~~~~a~~~~~~m~~~g~~p~~-~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 380 (558)
.|++++|..+|++..+ +.|+. . .|..+...+.+.|++++|..+|++..+. .+.+...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 45543 3 7888999999999999999999999863 2344555554444422 3699999
Q ss_pred HHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcc---CCC-CcccHHhHHHHHHhcCChHHHHHHHHHH
Q 036003 381 AYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL---DDS-HGGDYVILSNLCARAGRWEDVDYLRKLM 454 (558)
Q Consensus 381 A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (558)
|.++|++. .. +.+...|..++..+.+.|++++|..+|+++++. .|. ....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 22 236788999999999999999999999999996 342 4567888999999999999999999998
Q ss_pred HhCC
Q 036003 455 KDRG 458 (558)
Q Consensus 455 ~~~g 458 (558)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8743
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.34 E-value=1.5e-09 Score=112.42 Aligned_cols=412 Identities=9% Similarity=-0.013 Sum_probs=279.4
Q ss_pred HHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCC---chHHHHHHHHhH
Q 036003 41 HAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKT---PIRAIFLFVELL 114 (558)
Q Consensus 41 ~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~ 114 (558)
++..++.. +-|...|..++..+.+. +.++.+..+|+++.. .+...|...+..-.+.|. ++.+..+|++..
T Consensus 55 lE~~l~~n-p~d~~~W~~yi~~~~~~---~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 55 LNDMIEEQ-PTDIFLYVKLLKHHVSL---KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHC-cCCHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 34443433 56899999999999998 999999999998865 355678888888888888 999999999998
Q ss_pred HCC-CCCCcccHHHHHHHHHhcC------cccHHHHHHHHHHHHHh-CC-CCh-HHHHHHHHHHHHh---------CCCh
Q 036003 115 NSG-LLPDDYSFPSLLKACACVG------AEALEEGKQLHCFAIKL-GL-NSN-LYVCTTLINLYAE---------CSDV 175 (558)
Q Consensus 115 ~~g-~~p~~~~~~~ll~~~~~~~------~~~~~~a~~~~~~~~~~-g~-~~~-~~~~~~ll~~~~~---------~g~~ 175 (558)
... ..|+...|..-+.-..... .+..+...++|+.++.. |. .++ ...|...+..... .+++
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 763 2377777777766554431 01234456788877653 65 453 4678777766543 3457
Q ss_pred HHHHHHHhccCC-CCc---chHH---HHHHHHH----------HCCCccHHHHHHHHHHHC--CC----C----------
Q 036003 176 EAARRIFENISE-PCV---VSYN---AIITAYA----------RSSRPNEALSLFRELQER--NL----K---------- 222 (558)
Q Consensus 176 ~~A~~~~~~~~~-~~~---~~~~---~li~~~~----------~~g~~~~A~~~~~~m~~~--~~----~---------- 222 (558)
+.+..+|++... |.. .+|. .+...+. ...+++.|...+.++... ++ +
T Consensus 211 ~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~ 290 (679)
T 4e6h_A 211 QYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESN 290 (679)
T ss_dssp HHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTT
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhcc
Confidence 789999999876 321 2232 2211110 011233344445443211 11 1
Q ss_pred -C-----C---HHHHHHHHHHHhccC-------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhc
Q 036003 223 -P-----T---DVTMLSALSSCALLG-------SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV-SVFDN 285 (558)
Q Consensus 223 -p-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~ 285 (558)
| + ...|...+.--...+ ..+.+..+|++.... .+.+..+|-..+..+.+.|+.++|. .+|++
T Consensus 291 ~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~r 369 (679)
T 4e6h_A 291 LPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKL 369 (679)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 1 1 122333333222221 123455678888776 3557788888888888999999996 99988
Q ss_pred cCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHHHccCC
Q 036003 286 MSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV---------SPD------------EITFLGLLYACSHTGL 341 (558)
Q Consensus 286 ~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---------~p~------------~~~~~~ll~~~~~~g~ 341 (558)
... .+...|-..+...-+.|++++|..+|+++.+... .|+ ...|...+....+.|+
T Consensus 370 Ai~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~ 449 (679)
T 4e6h_A 370 GQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG 449 (679)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC
Confidence 753 3566678888888999999999999999886310 142 2357777777778899
Q ss_pred hHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhc-CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036003 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA-GRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418 (558)
Q Consensus 342 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 418 (558)
.+.|..+|....+. ........|...+..-.+. ++.+.|.++|+.. ....+...|...+......|+.+.|..+|+
T Consensus 450 l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfe 528 (679)
T 4e6h_A 450 LAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFE 528 (679)
T ss_dssp HHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999873 1222344554444444444 4589999999987 223356778888888888999999999999
Q ss_pred HHHccCCC---CcccHHhHHHHHHhcCChHHHHHHHHHHHhCC
Q 036003 419 RIFELDDS---HGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 419 ~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
+++...|+ ....|..++..-.+.|+.+.+.++.+++.+.-
T Consensus 529 ral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 529 SSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99998873 34578888888889999999999999998753
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=3.4e-11 Score=117.72 Aligned_cols=162 Identities=13% Similarity=0.051 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhc---CCCCChhH
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMKA----QVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKY---GIVPGIKH 364 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~ 364 (558)
+++.+...|...|++++|+..|++..+. +..+ ...++..+..+|...|++++|...+++..... +.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 3445555555555555555555554431 1110 11344455555555666666666655554310 11112444
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHccCCCCcccHHhH
Q 036003 365 YGCMVDLLGRAGRLDEAYRFIDEL----PI--KST-PILWRTLLSSCSSHNN---LGLAKQVIERIFELDDSHGGDYVIL 434 (558)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~~----~~--~~~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l 434 (558)
+..+...|.+.|++++|...+++. .. .+. ...+..+...+...++ +.+|...+++. ...+.....+..+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHH
Confidence 555556666666666666666554 11 111 2233444444445555 55555555541 1112223345566
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 036003 435 SNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 435 ~~~~~~~g~~~~A~~~~~~m~ 455 (558)
+..|...|++++|...+++..
T Consensus 343 a~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 666666666666666666554
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=6.2e-11 Score=102.55 Aligned_cols=161 Identities=14% Similarity=0.056 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036003 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337 (558)
Q Consensus 261 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 337 (558)
..+..+...+...|++++|...|+++.+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444555566666666666666655432 34445555555555555555555555555431 123344444444444
Q ss_pred ccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036003 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417 (558)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 417 (558)
..|++++|.+.++++... . +.+...+..+...+...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~--------------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--N--------------------------------PINFNVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--C--------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--C--------------------------------cHhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 445555555554444431 1 223445555555555666666666666
Q ss_pred HHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 418 ERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
+++++..|.++..+..++.+|...|++++|.+.+++..+
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666665555555566666666666666666666655543
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=4.3e-11 Score=125.45 Aligned_cols=163 Identities=13% Similarity=0.127 Sum_probs=124.2
Q ss_pred CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHH
Q 036003 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD-EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368 (558)
Q Consensus 290 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 368 (558)
+..+|+.+...|.+.|++++|+..|++..+. .|+ ...+..+..++.+.|++++|.+.|++..+. -+-+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3456777777777777777777777777763 443 567777777778888888888888777752 22346777788
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHH
Q 036003 369 VDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWED 446 (558)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 446 (558)
..+|.+.|++++|++.|++. ...| +...|+.+..++...|++++|++.|+++++++|+++.+|..++.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888888776 3334 567888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHh
Q 036003 447 VDYLRKLMKD 456 (558)
Q Consensus 447 A~~~~~~m~~ 456 (558)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777653
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.30 E-value=2.3e-10 Score=98.93 Aligned_cols=168 Identities=15% Similarity=0.063 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHHHH
Q 036003 225 DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIVAY 301 (558)
Q Consensus 225 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 301 (558)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++. ..+...|..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3467778888999999999999999887654 3467788889999999999999999999875 33678899999999
Q ss_pred HHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 036003 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381 (558)
Q Consensus 302 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 381 (558)
...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. . +.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~--------------------- 142 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-R-PN--------------------- 142 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TT---------------------
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-C-cc---------------------
Confidence 99999999999999998853 335667777777788888888888888777653 1 12
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
+...+..+...+...|++++|...++++++..|.+.
T Consensus 143 -----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 143 -----------EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred -----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 334455556666666666666666666666655543
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.29 E-value=1.5e-09 Score=105.97 Aligned_cols=227 Identities=7% Similarity=0.053 Sum_probs=160.7
Q ss_pred HHHHHHHCCCccHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHhCC-----C-CchhHHH
Q 036003 196 IITAYARSSRPNEALSLFRELQERNL-KPT----DVTMLSALSSCALLGSLDLGKWIHEYIKKYGL-----D-KYVKVNT 264 (558)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~ 264 (558)
....+...|++++|+..|++..+... .++ ...+..+..++...|+++.|...+++..+... . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445667777777777777654310 122 23566667777777788777777777654311 1 1244666
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC-----C----CHHhHHHHHHHHHHCCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 036003 265 ALIDMHAKCGRLDDAVSVFDNMSG-----K----DTQAWSAMIVAYATHGQGHKSILMFEEMMK-----AQVSPDEITFL 330 (558)
Q Consensus 265 ~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~ 330 (558)
.+..+|...|++++|.+.|++..+ . ...+++.+...|...|++++|+..+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 777888888888888887776542 1 234677888888999999999999988876 32 22357788
Q ss_pred HHHHHHHccCChHHHHHHHHHchhhcCC---CCChhHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 036003 331 GLLYACSHTGLVDEGWNYFYSMRDKYGI---VPGIKHYGCMVDLLGRAGR---LDEAYRFIDELPIKST-PILWRTLLSS 403 (558)
Q Consensus 331 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~ 403 (558)
.+...+.+.|++++|...+++..+...- +.....+..+...|...++ +.+|+.++++....|+ ...+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 8888999999999999999988764222 1223456667777888888 8899999998754443 3466778899
Q ss_pred HHhcCCHHHHHHHHHHHHcc
Q 036003 404 CSSHNNLGLAKQVIERIFEL 423 (558)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~ 423 (558)
|...|++++|...|+++++.
T Consensus 346 y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 80
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.28 E-value=5.3e-11 Score=119.80 Aligned_cols=211 Identities=11% Similarity=-0.002 Sum_probs=122.3
Q ss_pred cHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCh-HHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHH
Q 036003 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDV-EAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFR 214 (558)
Q Consensus 139 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 214 (558)
.++++.+.++...... +.+...+..+...|...|++ ++|++.|++..+ .+..+|..+...|.+.|++++|.+.|+
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455555555443322 23455555566666666666 666666655543 234455555566666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcc---------CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 036003 215 ELQERNLKPTDVTMLSALSSCALL---------GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285 (558)
Q Consensus 215 ~m~~~~~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 285 (558)
+..+. .|+...+..+..++... |++++|...++++.+.. +.
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~--------------------------- 211 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VL--------------------------- 211 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TT---------------------------
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CC---------------------------
Confidence 55543 34445555555555555 55555555555554432 12
Q ss_pred cCCCCHHhHHHHHHHHHHC--------CChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCChHHHHHHHHHch
Q 036003 286 MSGKDTQAWSAMIVAYATH--------GQGHKSILMFEEMMKAQVSP----DEITFLGLLYACSHTGLVDEGWNYFYSMR 353 (558)
Q Consensus 286 ~~~~~~~~~~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 353 (558)
+...|..+..+|... |++++|+..|++..+. .| +...+..+..+|...|++++|.+.|++..
T Consensus 212 ----~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 212 ----DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455555555555 6667777777776663 33 55667777777777777777777777776
Q ss_pred hhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 354 DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 354 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
+. .+.+...+..+..++...|++++|.+.+.++
T Consensus 286 ~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 286 AL--DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred Hh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 53 2334556677777777777777777766665
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.25 E-value=2.2e-10 Score=103.24 Aligned_cols=188 Identities=10% Similarity=-0.035 Sum_probs=112.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC----CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 036003 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSG----KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD-EITFLGLL 333 (558)
Q Consensus 259 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll 333 (558)
++..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..|++..+. .|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 345556666677777777777777766542 45555555666777777777777777776663 343 35566666
Q ss_pred HHHHccCChHHHHHHHHHchhhcCCCCCh-------hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHH
Q 036003 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGI-------KHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST---PILWRTLLS 402 (558)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~ 402 (558)
.++...|++++|...+++..+. .+.+. ..|..+...+...|++++|++.|++. ...|+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 6677777777777777766653 12223 34555666666667777777776665 44444 345555555
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 403 SCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 403 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
++... +...++++..+.+.+...|..+. ....+.+++|...+++..+.
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 55432 33445555555544433333322 33445569999999988874
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.24 E-value=5.3e-10 Score=100.65 Aligned_cols=203 Identities=11% Similarity=0.041 Sum_probs=159.0
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHH
Q 036003 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIV 299 (558)
Q Consensus 223 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~ 299 (558)
.|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|+..|++..+. +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4667888889999999999999999999999875467777777999999999999999999987633 5678999999
Q ss_pred HHHHCCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC---hhHHHHH
Q 036003 300 AYATHGQGHKSILMFEEMMKAQVSPD-E-------ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG---IKHYGCM 368 (558)
Q Consensus 300 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 368 (558)
.|...|++++|+..+++..+. .|+ . ..|..+...+...|++++|...|++..+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999984 343 4 4577777888999999999999999985 3454 5677788
Q ss_pred HHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHH
Q 036003 369 VDLLGRAGRLDEAYRFIDEL-P-IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
...|...|+. +++++ . ...+...+.... ....+.+++|...++++++++|.++.+...+..+
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 8888766543 23332 1 122344444333 3445679999999999999999987766665544
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.20 E-value=5.7e-09 Score=101.62 Aligned_cols=225 Identities=13% Similarity=-0.015 Sum_probs=124.5
Q ss_pred HHHHHHhcCCCchHHHHHHHHhHHCCCCCCcc----cHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC---CC--hHHHH
Q 036003 92 TMARGYSRSKTPIRAIFLFVELLNSGLLPDDY----SFPSLLKACACVGAEALEEGKQLHCFAIKLGL---NS--NLYVC 162 (558)
Q Consensus 92 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~---~~--~~~~~ 162 (558)
.....+...|++++|...+++........+.. .++.+...+... |++++|...+++..+... .+ ...++
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK--GELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 33445567788888888888877653211211 334444555566 888888888877765321 11 12334
Q ss_pred HHHHHHHHhCCChHHHHHHHhccCC-------C----CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCC--C--CHHH
Q 036003 163 TTLINLYAECSDVEAARRIFENISE-------P----CVVSYNAIITAYARSSRPNEALSLFRELQERNLK--P--TDVT 227 (558)
Q Consensus 163 ~~ll~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p--~~~~ 227 (558)
..+...+...|++++|...+++..+ + ....+..+...+...|++++|...+++....... + ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 5566777777887777777766542 1 1123455666667777777777777765543211 1 1234
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCch-hHHH-----HHHHHHHhcCCHHHHHHHHhccCCCC-------HHhH
Q 036003 228 MLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV-KVNT-----ALIDMHAKCGRLDDAVSVFDNMSGKD-------TQAW 294 (558)
Q Consensus 228 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~ 294 (558)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++.....+ ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 555666666777777777777766543211111 1111 12233556666666666666554321 1123
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHH
Q 036003 295 SAMIVAYATHGQGHKSILMFEEMM 318 (558)
Q Consensus 295 ~~li~~~~~~~~~~~a~~~~~~m~ 318 (558)
..+...+...|++++|...+++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555556555555555543
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.18 E-value=5.5e-10 Score=104.75 Aligned_cols=187 Identities=9% Similarity=-0.032 Sum_probs=120.1
Q ss_pred HHHhcCCHHHHHHHHhccCCC---------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 036003 269 MHAKCGRLDDAVSVFDNMSGK---------DTQAWSAMIVAYATHGQGHKSILMFEEMMKA----QVSP-DEITFLGLLY 334 (558)
Q Consensus 269 ~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~ 334 (558)
.|...|++++|...|++..+- ...+|+.+..+|...|++++|+..|++..+. |-.. -..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666555555544311 1345666777777777777777777666542 1110 1346777778
Q ss_pred HHHcc-CChHHHHHHHHHchhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CH-----HHHHHH
Q 036003 335 ACSHT-GLVDEGWNYFYSMRDKYGIVPG----IKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS---TP-----ILWRTL 400 (558)
Q Consensus 335 ~~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~---~~-----~~~~~l 400 (558)
.|... |++++|...|++..+...-..+ ..++..+...|.+.|++++|+..|++. ...| .. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 9999999888887753111111 356778888999999999999999886 2222 21 256778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCccc-----HHhHHHHHH--hcCChHHHHHHHHHHH
Q 036003 401 LSSCSSHNNLGLAKQVIERIFELDDSHGGD-----YVILSNLCA--RAGRWEDVDYLRKLMK 455 (558)
Q Consensus 401 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~m~ 455 (558)
..++...|++++|...+++++++.|..... +..++..|. ..+++++|...|+++.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 888899999999999999999988876543 344556664 4567888888876553
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.13 E-value=2.9e-10 Score=105.74 Aligned_cols=154 Identities=8% Similarity=0.028 Sum_probs=88.5
Q ss_pred HHCCCccHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh------CC-CCchhHHHHH
Q 036003 201 ARSSRPNEALSLFRELQER-------NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY------GL-DKYVKVNTAL 266 (558)
Q Consensus 201 ~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 266 (558)
...|++++|+..|++..+. ..+.....+..+...+...|++++|...++++.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456777777777665442 11223446667777777788888888777777654 21 2234556666
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC-----------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHC------CCCCC-HHH
Q 036003 267 IDMHAKCGRLDDAVSVFDNMSGK-----------DTQAWSAMIVAYATHGQGHKSILMFEEMMKA------QVSPD-EIT 328 (558)
Q Consensus 267 ~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~ 328 (558)
...|...|++++|.+.|++..+. ...+|..+...|...|++++|...+++..+. +-.|+ ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 77777777777777666654311 2334555556666666666666666665542 11221 234
Q ss_pred HHHHHHHHHccCChHHHHHHHHHchh
Q 036003 329 FLGLLYACSHTGLVDEGWNYFYSMRD 354 (558)
Q Consensus 329 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 354 (558)
+..+...+...|++++|..++++..+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555566666666666655543
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.13 E-value=1.7e-09 Score=101.47 Aligned_cols=243 Identities=13% Similarity=-0.045 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhC--C-ChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHH
Q 036003 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAEC--S-DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218 (558)
Q Consensus 142 ~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~--g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (558)
+|.+++++..+.- +++...+ .+.+. + ++++|...|++. ...|...|++++|...|.+..+
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~ 65 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-----KLFSGSDSYKFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAAD 65 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-----HHHSCCSHHHHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh-CcCCCcc-----hhcCCCCCccHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHH
Confidence 3566666666652 3222222 22233 2 488888887663 6778888888888888877654
Q ss_pred C----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHh
Q 036003 219 R----NLKPT-DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293 (558)
Q Consensus 219 ~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 293 (558)
. |-+++ ..+|..+..+|...|++++|...+++..+.. ...|+...+ ..+
T Consensus 66 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------------~~~g~~~~~-----------a~~ 119 (292)
T 1qqe_A 66 YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF---------------THRGQFRRG-----------ANF 119 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHTTCHHHH-----------HHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------HHcCCHHHH-----------HHH
Confidence 2 21111 3466677777777777777777776665421 111222211 123
Q ss_pred HHHHHHHHHHC-CChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCCh-----
Q 036003 294 WSAMIVAYATH-GQGHKSILMFEEMMKAQVS-PD----EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI----- 362 (558)
Q Consensus 294 ~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----- 362 (558)
|+.+...|... |++++|+..|++..+.... .+ ..++..+...+...|++++|...|++......-.+..
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 45555566664 6666666666665542100 01 2345566666667777777777777666531111111
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHHccCCCC
Q 036003 363 KHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTP------ILWRTLLSSCS--SHNNLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~------~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~ 427 (558)
..|..+..++...|++++|...|++. ...|+. ..+..++.++. ..+++++|+..|+++..++|..
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 14555666666777777777777665 333321 12333444443 3456677777776666665543
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.10 E-value=2.6e-09 Score=99.18 Aligned_cols=149 Identities=11% Similarity=0.099 Sum_probs=101.7
Q ss_pred hCCChHHHHHHHhccCC-------C----CcchHHHHHHHHHHCCCccHHHHHHHHHHHC------CCCC-CHHHHHHHH
Q 036003 171 ECSDVEAARRIFENISE-------P----CVVSYNAIITAYARSSRPNEALSLFRELQER------NLKP-TDVTMLSAL 232 (558)
Q Consensus 171 ~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~ll 232 (558)
..|++++|+..|++..+ + ...++..+...|...|++++|+..+++..+. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45666655555554432 2 2346777778888888888888888877653 1122 344677777
Q ss_pred HHHhccCChHHHHHHHHHHHHh------C-CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----------CHHhH
Q 036003 233 SSCALLGSLDLGKWIHEYIKKY------G-LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-----------DTQAW 294 (558)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~ 294 (558)
..+...|++++|...++++.+. . .+.....+..+...|...|++++|...|++..+. ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8888888888888888877654 1 1233566777788888888888888887766422 24467
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHH
Q 036003 295 SAMIVAYATHGQGHKSILMFEEMMK 319 (558)
Q Consensus 295 ~~li~~~~~~~~~~~a~~~~~~m~~ 319 (558)
..+...|...|++++|...+++..+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777888888888888888887765
No 88
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.09 E-value=1.6e-09 Score=113.56 Aligned_cols=162 Identities=10% Similarity=0.133 Sum_probs=127.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 036003 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD-EITFLGLLY 334 (558)
Q Consensus 259 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~ 334 (558)
+...++.|..+|.+.|++++|++.|++..+ .+..+|+.+..+|.+.|++++|+..|++..+. .|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 456677777777777777777777776542 35677888888888888888888888888873 454 577888888
Q ss_pred HHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 036003 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGL 412 (558)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 412 (558)
++...|++++|.+.|++..+. -+-+...|..+..+|.+.|++++|++.|++. ...| +...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 888888888888888888753 2335678888888899999999999988886 3344 56788889999999999999
Q ss_pred HHHHHHHHHccC
Q 036003 413 AKQVIERIFELD 424 (558)
Q Consensus 413 a~~~~~~~~~~~ 424 (558)
|.+.+++++++.
T Consensus 164 A~~~~~kal~l~ 175 (723)
T 4gyw_A 164 YDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999999887654
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.09 E-value=9.7e-09 Score=94.44 Aligned_cols=204 Identities=10% Similarity=-0.026 Sum_probs=125.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCCC---C---HHhHHHHHHHHHHCCChHHHHHHHHHHHHCCC-CCC-HHHHHH
Q 036003 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGK---D---TQAWSAMIVAYATHGQGHKSILMFEEMMKAQV-SPD-EITFLG 331 (558)
Q Consensus 260 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~~ 331 (558)
...+-.+...+.+.|++++|...|+.+.+. + ...+..+..+|.+.|++++|+..|++..+... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 444445666666777777777777666532 2 44566666667777777777777777666321 112 234555
Q ss_pred HHHHHHc--------cCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036003 332 LLYACSH--------TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403 (558)
Q Consensus 332 ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 403 (558)
+..++.. .|++++|...|+++.+.+ +.+......+.......+.. ...+..+...
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~~ 157 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAARL 157 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 5555555 666666666666666531 11122222211111000000 1124667888
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCc---ccHHhHHHHHHhc----------CChHHHHHHHHHHHhCCCccCCcccEEEE
Q 036003 404 CSSHNNLGLAKQVIERIFELDDSHG---GDYVILSNLCARA----------GRWEDVDYLRKLMKDRGVLKVPGCSSIEV 470 (558)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~~~~~~~~~~~ 470 (558)
|...|++++|+..|+++++..|.++ ..+..++.+|... |++++|...++++.+...
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p----------- 226 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP----------- 226 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-----------
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-----------
Confidence 9999999999999999999988854 4788889999876 899999999999887422
Q ss_pred CCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHH
Q 036003 471 NNVVREFFSGDGVHSYSTDLQKALDELVKELKM 503 (558)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 503 (558)
.++...++...+.++...+..
T Consensus 227 ------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ------------CChHHHHHHHHHHHHHHHHHH
Confidence 334445666666666665543
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.08 E-value=1.4e-08 Score=93.46 Aligned_cols=239 Identities=11% Similarity=0.016 Sum_probs=143.1
Q ss_pred HHhCCChHHHHHHHhccCCCC-cchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 036003 169 YAECSDVEAARRIFENISEPC-VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247 (558)
Q Consensus 169 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 247 (558)
..-.|.+..++.-..++...+ ...-.-+.++|...|++.... .-.|....+..+... ...+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~-~~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQF-LDTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHH-HTTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHH-hccc----HHHH
Confidence 344566666666555543322 122233456777777766421 112333233333322 2222 4555
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCC
Q 036003 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG-----KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322 (558)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 322 (558)
+++....+ +++...+..+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+ .
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 66555444 33444445677777778888888888777632 2455667777888888888888888888877 4
Q ss_pred CC-----CHHHHHHHHHHH--HccC--ChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC--
Q 036003 323 SP-----DEITFLGLLYAC--SHTG--LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-- 390 (558)
Q Consensus 323 ~p-----~~~~~~~ll~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-- 390 (558)
.| +..+...|..++ ...| ++.+|..+|+++... .|+......+..++.+.|++++|.+.++.+ ..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 56 355556666553 2223 788888888887653 344233334444777888888888887754 21
Q ss_pred ---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcc
Q 036003 391 ---------KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429 (558)
Q Consensus 391 ---------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 429 (558)
..++.+...++......|+ +|.++++++.+..|.++.
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 2245566556655556676 778888888888888753
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=4.4e-09 Score=85.25 Aligned_cols=124 Identities=15% Similarity=0.177 Sum_probs=66.6
Q ss_pred HHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC
Q 036003 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHN 408 (558)
Q Consensus 331 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g 408 (558)
.+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|.++++++ ..+.+...+..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 3344444444444444444444432 1223344444444555555555555555444 11223445555666666666
Q ss_pred CHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 409 NLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 409 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
++++|.+.++++.+..|.+...+..++.+|.+.|++++|...++++.+
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666666666666666666666666666666666666554
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.04 E-value=1.3e-08 Score=93.71 Aligned_cols=240 Identities=12% Similarity=0.040 Sum_probs=167.3
Q ss_pred HHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 036003 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276 (558)
Q Consensus 197 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 276 (558)
|+-..-.|++..++.-...+.. .........+.+++...|+++.. ..-.|....+..+. .|...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc--
Confidence 3445557888888774333321 12223344455777777766531 12233333444333 344433
Q ss_pred HHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHc
Q 036003 277 DDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSM 352 (558)
Q Consensus 277 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 352 (558)
|+..|++..+ ++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6777776653 455666788899999999999999999987765423 4567888899999999999999999999
Q ss_pred hhhcCCCC-----ChhHHHHHHHHH--hhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 036003 353 RDKYGIVP-----GIKHYGCMVDLL--GRAG--RLDEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422 (558)
Q Consensus 353 ~~~~~~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 422 (558)
.+. .| +..+...|+.++ ...| ++++|..+|+++ ...|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 753 55 345555666553 3334 999999999999 4446633444455589999999999999998877
Q ss_pred c----------CCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCC
Q 036003 423 L----------DDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 423 ~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
. +|.++.++..++......|+ +|.++++++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 6 48888899888877778887 8999999998743
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.02 E-value=4.2e-09 Score=96.94 Aligned_cols=203 Identities=12% Similarity=0.034 Sum_probs=144.9
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHhccCCC------CHHhH
Q 036003 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK--YVKVNTALIDMHAKCGRLDDAVSVFDNMSGK------DTQAW 294 (558)
Q Consensus 223 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~ 294 (558)
.+...+..+...+.+.|++++|...|+.+.+..... ....+..+..+|.+.|++++|...|++..+. ...++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 456677788888999999999999999998875222 1567777999999999999999999988632 24567
Q ss_pred HHHHHHHHH--------CCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHH
Q 036003 295 SAMIVAYAT--------HGQGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY 365 (558)
Q Consensus 295 ~~li~~~~~--------~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 365 (558)
..+..++.. .|++++|+..|++..+. .|+. ... .+...+..+... ....+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~--------------~a~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVD--------------DATQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHH--------------HHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHH--------------HHHHHHHHHHHH-----HHHHH
Confidence 788888988 99999999999999984 3432 111 111111111111 11235
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHccCCCCcc-
Q 036003 366 GCMVDLLGRAGRLDEAYRFIDEL-PIKST----PILWRTLLSSCSSH----------NNLGLAKQVIERIFELDDSHGG- 429 (558)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~- 429 (558)
..+...|.+.|++++|+..|+++ ...|+ ...+..+..+|... |++++|...++++++..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 56778888999999999998886 22232 45677777888766 8899999999999999998754
Q ss_pred --cHHhHHHHHHhcCChHH
Q 036003 430 --DYVILSNLCARAGRWED 446 (558)
Q Consensus 430 --~~~~l~~~~~~~g~~~~ 446 (558)
++..+..++.+.+++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 33444444444444433
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=1.7e-08 Score=81.70 Aligned_cols=131 Identities=17% Similarity=0.256 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHH
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 372 (558)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677778888888888888888887653 235667777788888888888888888888763 234566778888888
Q ss_pred hhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 373 GRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 373 ~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
...|++++|.++++++ .. +.+...+..+...+...|++++|...++++++.+|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8899999998888876 22 335678888888999999999999999999887765
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.98 E-value=4.2e-08 Score=87.92 Aligned_cols=182 Identities=8% Similarity=0.030 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC--C-C---HHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCC-CCH-HHHHHHH
Q 036003 262 VNTALIDMHAKCGRLDDAVSVFDNMSG--K-D---TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS-PDE-ITFLGLL 333 (558)
Q Consensus 262 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~-~~~~~ll 333 (558)
.+..+...+.+.|++++|+..|+++.+ | + ...+..+..+|.+.|++++|+..|+++.+.... +.. ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 344466777888888888888887753 2 1 246777778888888888888888888774321 111 1333344
Q ss_pred HHHHc------------------cCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHH
Q 036003 334 YACSH------------------TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395 (558)
Q Consensus 334 ~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 395 (558)
.++.. .|++++|...|+++.+. .+-+...+.++.....-.+.. ..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~---------------~~ 148 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRL---------------AK 148 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHH---------------HH
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHH---------------HH
Confidence 44433 34555555555555532 111122211111100000000 01
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc---ccHHhHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036003 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG---GDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 460 (558)
....+...+...|++++|...|+++++..|.++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 113456778899999999999999999998875 56889999999999999999999998876554
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.95 E-value=2.1e-08 Score=93.58 Aligned_cols=174 Identities=7% Similarity=-0.009 Sum_probs=135.5
Q ss_pred HHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhh
Q 036003 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355 (558)
Q Consensus 277 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 355 (558)
+...+.+......+...+..+...+.+.|++++|...|++..+. .| +...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 34444444444445666777888888899999999999998874 34 5577888888999999999999999988753
Q ss_pred cCCCCChhHHHH-HHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC--ccc
Q 036003 356 YGIVPGIKHYGC-MVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH--GGD 430 (558)
Q Consensus 356 ~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~ 430 (558)
.|+...... ....+.+.++.++|...+++. ... .+...+..+...+...|++++|...|+++++.+|.+ ...
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 445433322 233466777888888888876 223 467888999999999999999999999999999987 778
Q ss_pred HHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 431 YVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 431 ~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
+..++.+|...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999998887654
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.95 E-value=3.3e-09 Score=111.64 Aligned_cols=169 Identities=10% Similarity=-0.027 Sum_probs=136.3
Q ss_pred HhcCCHHHHHHHHhccC-----------CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036003 271 AKCGRLDDAVSVFDNMS-----------GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339 (558)
Q Consensus 271 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 339 (558)
...|++++|++.|++.. ..+...|..+..+|.+.|++++|+..|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67789999999888776 3366778888889999999999999999988742 22567788888888999
Q ss_pred CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 036003 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVI 417 (558)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 417 (558)
|++++|...|++..+. -+.+...|..+..+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998863 23457788888999999999999 8888886 3334 5678888999999999999999999
Q ss_pred HHHHccCCCCcccHHhHHHHHHhcCC
Q 036003 418 ERIFELDDSHGGDYVILSNLCARAGR 443 (558)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~~~~~g~ 443 (558)
+++++++|.+..++..++.+|...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999988888888888877655
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.93 E-value=6.3e-08 Score=85.77 Aligned_cols=173 Identities=10% Similarity=-0.050 Sum_probs=128.0
Q ss_pred HHHHHhccCC-CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----ChHHHHHHHHHch
Q 036003 279 AVSVFDNMSG-KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG----LVDEGWNYFYSMR 353 (558)
Q Consensus 279 A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~ 353 (558)
|.+.|++..+ .++.++..+...|...+++++|+.+|++..+.| +...+..|...|.. + ++++|...|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3344444332 356667777777777788888888888887765 45666666666666 5 7888888888886
Q ss_pred hhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 036003 354 DKYGIVPGIKHYGCMVDLLGR----AGRLDEAYRFIDEL-PIKST---PILWRTLLSSCSS----HNNLGLAKQVIERIF 421 (558)
Q Consensus 354 ~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 421 (558)
+. + +...+..|...|.. .+++++|+++|++. ...+. +..+..|...|.. .+++++|...|+++.
T Consensus 81 ~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 53 3 56677777777776 78889999998887 33332 6788888888887 788999999999998
Q ss_pred ccCCCCcccHHhHHHHHHhc-C-----ChHHHHHHHHHHHhCCCc
Q 036003 422 ELDDSHGGDYVILSNLCARA-G-----RWEDVDYLRKLMKDRGVL 460 (558)
Q Consensus 422 ~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g~~ 460 (558)
+. +.++..+..|..+|... | ++++|...|++..+.|..
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 88 55566788888888654 3 899999999988877654
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.91 E-value=1.3e-09 Score=90.72 Aligned_cols=139 Identities=11% Similarity=-0.010 Sum_probs=93.0
Q ss_pred HHHCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHH
Q 036003 301 YATHGQGHKSILMFEEMMKAQVSPD-EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379 (558)
Q Consensus 301 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 379 (558)
+...|++++|+..++.... ..|+ ...+..+...|.+.|++++|.+.|++..+. -+-+...|..+..+|.+.|+++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchH
Confidence 3344556666666665544 2222 233445566666777777777777776652 2335666777777777777777
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHccCCCCcccHHhHHHHHHhcCC
Q 036003 380 EAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQV-IERIFELDDSHGGDYVILSNLCARAGR 443 (558)
Q Consensus 380 ~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 443 (558)
+|+..|++. ...| +...|..+...|.+.|++++|.+. ++++++++|.++.+|......+...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777765 3334 567788888888888888766554 588888888888888888888777774
No 100
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.87 E-value=1.5e-06 Score=87.30 Aligned_cols=351 Identities=9% Similarity=0.004 Sum_probs=177.1
Q ss_pred hHHHHHHHHhhcCCCCCCHHHHHHHHccCCC--CCcccHHHHHHHHhcCCC-chHHHHHHHHhHHC-CCCC-CcccHHHH
Q 036003 54 NVLTKLINFCTQNPTTSSMEHAHLLFDRIPE--PDIVLFNTMARGYSRSKT-PIRAIFLFVELLNS-GLLP-DDYSFPSL 128 (558)
Q Consensus 54 ~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~p-~~~~~~~l 128 (558)
.+|...+..+-. |+++.+..+|++... |++..|...+....+.++ .+....+|+..... |..| +...|...
T Consensus 16 ~vyer~l~~~P~----~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 16 AIMEHARRLYMS----KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHHT----TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHCCC----CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 344444554433 578888888887665 777778877777666553 35566677776654 4333 34455555
Q ss_pred HHHHHhc--CcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-------------hCCChHHHHHHHhccCC----CC
Q 036003 129 LKACACV--GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA-------------ECSDVEAARRIFENISE----PC 189 (558)
Q Consensus 129 l~~~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~-------------~~g~~~~A~~~~~~~~~----~~ 189 (558)
+.-+... ..++.+.+.++|+.++......-...|......-. ..+.+..|..+++.+.. .+
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 5443210 01567778888888876321111122222111100 01122333333333221 13
Q ss_pred cchHHHHHHHHHHCC-C------ccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH
Q 036003 190 VVSYNAIITAYARSS-R------PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262 (558)
Q Consensus 190 ~~~~~~li~~~~~~g-~------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 262 (558)
...|...+..-...+ . .+.+..+|+++... .+-+...|...+..+.+.|+.+.|..++++.... +.+...
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l 248 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFL 248 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHH
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHH
Confidence 335555444322221 1 23456788887764 3445667777777777888899999999988887 444433
Q ss_pred HHHHHHHHHhcCCHHHH-HHHHhccC--C-------C---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHH
Q 036003 263 NTALIDMHAKCGRLDDA-VSVFDNMS--G-------K---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITF 329 (558)
Q Consensus 263 ~~~l~~~~~~~g~~~~A-~~~~~~~~--~-------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 329 (558)
+.. |....+.++. ..+.+... . + ....|...+....+.++.+.|..+|++. +. ...+...|
T Consensus 249 ~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~ 322 (493)
T 2uy1_A 249 SLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVF 322 (493)
T ss_dssp HHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHH
T ss_pred HHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHH
Confidence 322 2221111111 11111110 0 0 1123444555555555666666666666 21 11223333
Q ss_pred HHHHHHHHc-cCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036003 330 LGLLYACSH-TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408 (558)
Q Consensus 330 ~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g 408 (558)
......-.. .++.+.|..+|+...+.+ +.+...+...++...+.|+.+.|..+|+++. .....|...+..-...|
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G 398 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVG 398 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCC
Confidence 221111111 224666666666666542 2223344555555566666666666666662 24555555555555566
Q ss_pred CHHHHHHHHHHHH
Q 036003 409 NLGLAKQVIERIF 421 (558)
Q Consensus 409 ~~~~a~~~~~~~~ 421 (558)
+.+.+..+++++.
T Consensus 399 ~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 399 SMELFRELVDQKM 411 (493)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666666665554
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.86 E-value=1.2e-07 Score=97.77 Aligned_cols=159 Identities=11% Similarity=0.001 Sum_probs=117.5
Q ss_pred CCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 036003 274 GRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350 (558)
Q Consensus 274 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 350 (558)
|++++|.+.|++..+. +...|..+...|.+.|++++|...|++..+.. +-+...+..+..++...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6677777777776532 56678888888888888888888888888742 2246778888888889999999999999
Q ss_pred HchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHccCC
Q 036003 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSH---NNLGLAKQVIERIFELDD 425 (558)
Q Consensus 351 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~ 425 (558)
+..+. .+.+...+..+..+|.+.|++++|.+.|++. ...| +...+..+...+... |++++|.+.++++++.+|
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 88863 2345778888999999999999999999887 3233 577888899999999 999999999999999999
Q ss_pred CCcccHHhHH
Q 036003 426 SHGGDYVILS 435 (558)
Q Consensus 426 ~~~~~~~~l~ 435 (558)
.+...|..+.
T Consensus 160 ~~~~~~~~l~ 169 (568)
T 2vsy_A 160 GAVEPFAFLS 169 (568)
T ss_dssp CCSCHHHHTT
T ss_pred cccChHHHhC
Confidence 8887777665
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.86 E-value=7e-08 Score=91.04 Aligned_cols=219 Identities=10% Similarity=-0.010 Sum_probs=155.3
Q ss_pred CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 036003 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282 (558)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 282 (558)
.|++++|.+++++..+.. +.. .+...++++.|...|.++ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 467888888888776531 111 011147788887777654 4567788899888888
Q ss_pred HhccCCC-----C----HHhHHHHHHHHHHCCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHccCChHHHHHH
Q 036003 283 FDNMSGK-----D----TQAWSAMIVAYATHGQGHKSILMFEEMMKAQ---VSPD--EITFLGLLYACSHTGLVDEGWNY 348 (558)
Q Consensus 283 ~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~g~~~~a~~~ 348 (558)
|.+..+- + ..+|+.+...|...|++++|+..|++..+.- -.+. ..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 8766421 1 3468888999999999999999999876521 1121 3567788888888 999999999
Q ss_pred HHHchhhcCCCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 036003 349 FYSMRDKYGIVP----GIKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKST----PILWRTLLSSCSSHNNLGLAKQV 416 (558)
Q Consensus 349 ~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~g~~~~a~~~ 416 (558)
|++......-.. ...++..+...|.+.|++++|+..|++. +..++ ...+..++.++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 998876321111 1467888899999999999999999886 11122 23566777788888999999999
Q ss_pred HHHHHccCCCCccc-----HHhHHHHHHhcCChHHHHH
Q 036003 417 IERIFELDDSHGGD-----YVILSNLCARAGRWEDVDY 449 (558)
Q Consensus 417 ~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~A~~ 449 (558)
|++++ ..|....+ ...++..| ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 88865543 33455555 5677666555
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.85 E-value=3e-08 Score=102.38 Aligned_cols=151 Identities=14% Similarity=0.010 Sum_probs=117.7
Q ss_pred CCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 036003 304 HGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382 (558)
Q Consensus 304 ~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 382 (558)
.|++++|+..|++..+. .| +...+..+...+...|++++|.+.|++..+ -.+.+...+..+...|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 47889999999998874 34 467888999999999999999999999986 33446788999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhc---CChHHHHHHHHHHHhC
Q 036003 383 RFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA---GRWEDVDYLRKLMKDR 457 (558)
Q Consensus 383 ~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~ 457 (558)
+.+++. ...| +...+..+..++...|++++|.+.++++++.+|.+...+..++.+|... |++++|.+.+++..+.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999987 3333 5788999999999999999999999999999999999999999999999 9999999999988664
Q ss_pred C
Q 036003 458 G 458 (558)
Q Consensus 458 g 458 (558)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.84 E-value=6.3e-08 Score=85.52 Aligned_cols=129 Identities=9% Similarity=0.022 Sum_probs=94.7
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHH
Q 036003 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372 (558)
Q Consensus 294 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 372 (558)
++.+..+|.+.|++++|+..|++..+. .| +...+..+..++...|++++|...|+++.+. -+.+...+..+...|
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 344788888999999999999998884 34 5678888888899999999999999998863 234567788888877
Q ss_pred hhcCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 036003 373 GRAGR--LDEAYRFIDELPIKSTP--ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 373 ~~~g~--~~~A~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 427 (558)
...|. .+.+...++... .|++ ..+.....++...|++++|...|++++++.|.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 66554 345566666653 3333 344555666777889999999999999998863
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.83 E-value=3.1e-08 Score=84.91 Aligned_cols=154 Identities=7% Similarity=-0.003 Sum_probs=87.5
Q ss_pred HHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHH-Hhhc
Q 036003 298 IVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL-LGRA 375 (558)
Q Consensus 298 i~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~ 375 (558)
...+.+.|++++|+..|++..+. .| +...+..+...+...|++++|...++++... .|+...+..+... +...
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhh
Confidence 33444444455555444444331 12 2344444444555555555555555554432 1122222111111 1111
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC--cccHHhHHHHHHhcCChHHHHHHH
Q 036003 376 GRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH--GGDYVILSNLCARAGRWEDVDYLR 451 (558)
Q Consensus 376 g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~ 451 (558)
+...+|...+++. ...| +...+..+..++...|++++|...|+++++.+|.. +..+..++.+|...|+.++|...|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 1222345555554 2234 56778888888888888888888888888888764 447888888888888888888888
Q ss_pred HHHHh
Q 036003 452 KLMKD 456 (558)
Q Consensus 452 ~~m~~ 456 (558)
++...
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77643
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.83 E-value=9.3e-08 Score=100.62 Aligned_cols=188 Identities=14% Similarity=0.064 Sum_probs=147.2
Q ss_pred hccCChHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHC
Q 036003 236 ALLGSLDLGKWIHEYIK--------KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATH 304 (558)
Q Consensus 236 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 304 (558)
...|++++|...++++. +. .+.+...+..+..+|.+.|++++|++.|++..+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 77899999999999988 33 245677888899999999999999999998763 3788899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 036003 305 GQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383 (558)
Q Consensus 305 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 383 (558)
|++++|+..|++..+. .| +...+..+..++.+.|++++ .+.|++..+. -+.+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999984 45 45788889999999999999 9999999863 34467889999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHccCCCCcc
Q 036003 384 FIDEL-PIKST-PILWRTLLSSCSSHNN-----LGLAKQVIERIFELDDSHGG 429 (558)
Q Consensus 384 ~~~~~-~~~~~-~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~ 429 (558)
.|++. ...|+ ...+..+..++...++ .+...+..+...+..+..+.
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 99998 55665 5677778888776665 23334444444444443333
No 107
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.81 E-value=6e-08 Score=80.33 Aligned_cols=98 Identities=12% Similarity=-0.023 Sum_probs=87.4
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHH
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 438 (558)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++++++|.++.+|..++.+|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3567778888899999999999999987 3334 6789999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 036003 439 ARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~g 458 (558)
.+.|++++|...|++..+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999998754
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.81 E-value=1e-08 Score=85.31 Aligned_cols=121 Identities=12% Similarity=-0.016 Sum_probs=101.2
Q ss_pred HHHHHccCChHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 036003 333 LYACSHTGLVDEGWNYFYSMRDKYGIVP-GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNN 409 (558)
Q Consensus 333 l~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~ 409 (558)
...+...|++++|+..++.... ..| +...+-.+...|.+.|++++|++.|++. ...| +..+|..+..++...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 3445567889999999888764 233 3456678899999999999999999987 3344 67899999999999999
Q ss_pred HHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHH-HHHHHh
Q 036003 410 LGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL-RKLMKD 456 (558)
Q Consensus 410 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~ 456 (558)
+++|+..|+++++++|.++.+|..++.+|.+.|++++|.+. +++..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887765 577766
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.79 E-value=1.6e-07 Score=82.87 Aligned_cols=129 Identities=11% Similarity=0.037 Sum_probs=76.6
Q ss_pred HHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036003 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274 (558)
Q Consensus 195 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 274 (558)
.+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++.+.. +.+...+..+..+|...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 36667777777777777777776642 3355666677777777777777777777777664 334556666666665444
Q ss_pred C--HHHHHHHHhccCCCCHH--hHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHH
Q 036003 275 R--LDDAVSVFDNMSGKDTQ--AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327 (558)
Q Consensus 275 ~--~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 327 (558)
+ .+.+...++....++.. .+.....++...|++++|+..|++..+ +.|+..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~ 191 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHH
T ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHH
Confidence 3 34455566655554432 233344455556666667766666665 445543
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.78 E-value=7.6e-08 Score=82.43 Aligned_cols=155 Identities=9% Similarity=-0.033 Sum_probs=109.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHcc
Q 036003 264 TALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA-CSHT 339 (558)
Q Consensus 264 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~ 339 (558)
..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++.... .|+...+..+... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhh
Confidence 3456677788888888888887763 26677888888888888888888888887663 3343332222111 1222
Q ss_pred CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHHH
Q 036003 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST---PILWRTLLSSCSSHNNLGLAKQ 415 (558)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~a~~ 415 (558)
+....|...+++..+. .+.+...+..+...+...|++++|...|+++ ...|+ ...+..+...+...|+.++|..
T Consensus 88 ~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 88 AAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred cccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 2333467778777752 2335778888888999999999999999886 44443 5678888889999999999999
Q ss_pred HHHHHHc
Q 036003 416 VIERIFE 422 (558)
Q Consensus 416 ~~~~~~~ 422 (558)
.|++.+.
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888763
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.78 E-value=1.1e-07 Score=85.23 Aligned_cols=186 Identities=10% Similarity=-0.069 Sum_probs=132.6
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CH---HhHH
Q 036003 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK--YVKVNTALIDMHAKCGRLDDAVSVFDNMSG--K-DT---QAWS 295 (558)
Q Consensus 224 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~ 295 (558)
+...+..+...+.+.|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|+++.+ | +. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34456667778899999999999999999865322 235677789999999999999999999763 2 22 2455
Q ss_pred HHHHHHHH------------------CCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHchhhc
Q 036003 296 AMIVAYAT------------------HGQGHKSILMFEEMMKAQVSPDEI-TFLGLLYACSHTGLVDEGWNYFYSMRDKY 356 (558)
Q Consensus 296 ~li~~~~~------------------~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 356 (558)
.+..++.. .|++++|+..|+++.+. .|+.. ....... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---
Confidence 56666654 57899999999999984 45432 2211110 001111111
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCccc
Q 036003 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430 (558)
Q Consensus 357 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 430 (558)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|.+.++++....|.+...
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 12235677889999999999999987 22333 2568888999999999999999999999988877543
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.77 E-value=2.6e-07 Score=81.75 Aligned_cols=174 Identities=9% Similarity=-0.077 Sum_probs=109.0
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CHHhHHHHHHHHHHCC----ChHHHHHHHHHHH
Q 036003 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHG----QGHKSILMFEEMM 318 (558)
Q Consensus 244 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~----~~~~a~~~~~~m~ 318 (558)
|.++|++..+.| +...+..|...|...+++++|..+|++..+. +..++..+...|.. + ++++|+.+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444444432 3334444555555556666666666554433 45555556655555 4 6777777777776
Q ss_pred HCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHchhhcCCC-CChhHHHHHHHHHhh----cCCHHHHHHHHHhC-
Q 036003 319 KAQVSPDEITFLGLLYACSH----TGLVDEGWNYFYSMRDKYGIV-PGIKHYGCMVDLLGR----AGRLDEAYRFIDEL- 388 (558)
Q Consensus 319 ~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~~- 388 (558)
+.| +...+..|...|.. .+++++|...|++..+. +.. .+...+..|...|.. .+++++|..+|++.
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 654 45566666666665 67788888888777643 211 025677777777777 77888888888876
Q ss_pred CCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHccCC
Q 036003 389 PIKSTPILWRTLLSSCSSH-N-----NLGLAKQVIERIFELDD 425 (558)
Q Consensus 389 ~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~ 425 (558)
...++...+..|...|... | +.++|...|+++.+.+.
T Consensus 157 ~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 2234556677777777653 3 78888888888887764
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.77 E-value=1.9e-06 Score=80.11 Aligned_cols=215 Identities=11% Similarity=0.100 Sum_probs=99.6
Q ss_pred cHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC--ChHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc---CCH
Q 036003 207 NEALSLFRELQERNLKPT-DVTMLSALSSCALLG--SLDLGKWIHEYIKKYGLDKYVKVNTALIDMH----AKC---GRL 276 (558)
Q Consensus 207 ~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~ 276 (558)
++|+++++.++.. .|+ ...++.--.++...+ ++++++.+++.+.... +-+..+|+.-..++ ... +++
T Consensus 50 ~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 4666666666654 233 334454445555555 6666666666665543 22333343333222 222 444
Q ss_pred HHHHHHHhccCC---CCHHhHHHHHHHHHHCCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 036003 277 DDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGH--KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYS 351 (558)
Q Consensus 277 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 351 (558)
++++++++.+.+ ++..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-...+.+.+..
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~--------- 196 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHL--------- 196 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGG---------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc---------
Confidence 555555444432 24444444444444444444 444444444443221 333333333333333320
Q ss_pred chhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHccC---C
Q 036003 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLG-LAKQVIERIFELD---D 425 (558)
Q Consensus 352 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~---~ 425 (558)
.....++++++.++++ .. ..|...|+.+...+.+.|+.. .+..+.+++.+.+ |
T Consensus 197 ---------------------~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (306)
T 3dra_A 197 ---------------------ATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQV 255 (306)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEE
T ss_pred ---------------------chhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCC
Confidence 0000045555555444 11 224555555555555555432 2334555554444 4
Q ss_pred CCcccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 426 SHGGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 426 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
.++.++..++++|.+.|+.++|.++++.+.
T Consensus 256 ~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 256 TSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 455555566666666666666666666654
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.77 E-value=2.3e-07 Score=87.45 Aligned_cols=94 Identities=12% Similarity=0.021 Sum_probs=48.9
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-CCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE-CSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 216 (558)
|++++|.+++++..+..- .. +.+ .++++.|...|++ ....|...|++++|...|.+.
T Consensus 5 ~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 666677777766655321 10 111 3566666666554 244566666666666666654
Q ss_pred HHC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 036003 217 QER----NLKP-TDVTMLSALSSCALLGSLDLGKWIHEYIKK 253 (558)
Q Consensus 217 ~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 253 (558)
.+. +-.+ -..+|..+..+|...|++++|...+++..+
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 104 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASV 104 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 332 1000 022455555555666666666666655543
No 115
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.75 E-value=2.8e-08 Score=82.37 Aligned_cols=97 Identities=9% Similarity=-0.002 Sum_probs=83.6
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHH
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 438 (558)
+...+..+...+.+.|++++|...|++. ... .+...|..+..++...|++++|+..|+++++++|.++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4556777888888999999999999887 223 46788888999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 036003 439 ARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~ 457 (558)
...|++++|.+.|++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.75 E-value=6.7e-06 Score=76.37 Aligned_cols=171 Identities=13% Similarity=-0.043 Sum_probs=120.8
Q ss_pred HHHhCCChHHHHHHHhccCC--C-CcchHHHHHHHHHHCC--CccHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hcc
Q 036003 168 LYAECSDVEAARRIFENISE--P-CVVSYNAIITAYARSS--RPNEALSLFRELQERNLKPTDVTMLSALSSC----ALL 238 (558)
Q Consensus 168 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~ 238 (558)
...+....++|+.+++.+.. | +..+|+.--..+...| ++++++++++.+...+ +-+...|+.--..+ ...
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 33344445789999999876 3 4456888888888888 9999999999998864 33444555544444 444
Q ss_pred ---CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH--HHHHHHhccCC---CCHHhHHHHHHHHHHCCC----
Q 036003 239 ---GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD--DAVSVFDNMSG---KDTQAWSAMIVAYATHGQ---- 306 (558)
Q Consensus 239 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~---~~~~~~~~li~~~~~~~~---- 306 (558)
++++++..+++.+.+.. +-+..+|+--..++.+.|.++ ++++.++++.+ .|..+|+.....+...++
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchh
Confidence 78999999999999875 567778887777888889888 99999998874 377788877776666665
Q ss_pred --hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 036003 307 --GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341 (558)
Q Consensus 307 --~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 341 (558)
++++++.+++++.... -|...|+.+-..+.+.|+
T Consensus 200 ~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCC
Confidence 5666666666665422 244555555555555554
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=2.7e-07 Score=81.61 Aligned_cols=126 Identities=8% Similarity=-0.019 Sum_probs=100.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHh
Q 036003 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSS 406 (558)
Q Consensus 329 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~ 406 (558)
+..+...+...|++++|...|++.. .|+...+..+...|.+.|++++|.+.|++. .. +.+...|..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 4445556677788888888777663 456777888888888888888888888776 22 3356788888999999
Q ss_pred cCCHHHHHHHHHHHHccCCCCc----------------ccHHhHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036003 407 HNNLGLAKQVIERIFELDDSHG----------------GDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 407 ~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (558)
.|++++|.+.|+++++..|.+. ..+..++.+|.+.|++++|...+++..+...
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 9999999999999999887766 7889999999999999999999999887543
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.73 E-value=3.5e-07 Score=85.58 Aligned_cols=164 Identities=6% Similarity=-0.076 Sum_probs=118.8
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHccCChHHHHHHHHHchhhcC--CCCC--hh
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE-----ITFLGLLYACSHTGLVDEGWNYFYSMRDKYG--IVPG--IK 363 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~--~~ 363 (558)
.+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|...+++...... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3455667778888888888888887764322111 2233455566778899999999888765211 1111 45
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC------Cc
Q 036003 364 HYGCMVDLLGRAGRLDEAYRFIDEL----PIKST-----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDS------HG 428 (558)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~ 428 (558)
+++.+...|...|++++|...|++. ...|+ ..++..+...|...|++++|...++++++..+. ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999988775 11222 257888999999999999999999999876422 14
Q ss_pred ccHHhHHHHHHhcCChHHH-HHHHHHHHh
Q 036003 429 GDYVILSNLCARAGRWEDV-DYLRKLMKD 456 (558)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 456 (558)
.+|..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5688899999999999999 777877653
No 119
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.72 E-value=4.9e-07 Score=84.21 Aligned_cols=162 Identities=9% Similarity=0.020 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CHHhH-HHHHH
Q 036003 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK--DTQAW-SAMIV 299 (558)
Q Consensus 223 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~-~~li~ 299 (558)
.+...+..+...+.+.|++++|...++++.+.. +.+...+..+..+|.+.|++++|...|+++... +.... .....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 344455566666677777777777777776654 334555666777777777777777777766532 22211 11222
Q ss_pred HHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHH
Q 036003 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379 (558)
Q Consensus 300 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 379 (558)
.+...++.++|+..+++..+.. +.+...+..+...+...|++++|...|.++.+...-..+...+..++..|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 2444555555666666555532 123445555555566666666666666665543111111344555555555555555
Q ss_pred HHHHHHH
Q 036003 380 EAYRFID 386 (558)
Q Consensus 380 ~A~~~~~ 386 (558)
+|...++
T Consensus 273 ~a~~~~r 279 (287)
T 3qou_A 273 ALASXYR 279 (287)
T ss_dssp HHHHHHH
T ss_pred cHHHHHH
Confidence 5544443
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.72 E-value=1e-07 Score=76.38 Aligned_cols=107 Identities=9% Similarity=-0.043 Sum_probs=63.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHH
Q 036003 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCS 405 (558)
Q Consensus 328 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~ 405 (558)
.+......+.+.|++++|.+.|++..+. -+.+...|..+..+|.+.|++++|++.|++. ... .+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4445555566666666666666665542 2334555556666666666666666666654 222 24556666666666
Q ss_pred hcCCHHHHHHHHHHHHccCCCCcccHHhHHH
Q 036003 406 SHNNLGLAKQVIERIFELDDSHGGDYVILSN 436 (558)
Q Consensus 406 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 436 (558)
..|++++|.+.|+++++++|.+..++..|..
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 6677777777777777666666655555443
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.70 E-value=9.9e-07 Score=82.44 Aligned_cols=161 Identities=5% Similarity=-0.049 Sum_probs=118.1
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC----hhHHH
Q 036003 296 AMIVAYATHGQGHKSILMFEEMMKAQV-SPDE----ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG----IKHYG 366 (558)
Q Consensus 296 ~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ 366 (558)
..+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|...|++......-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888888888888888876321 2221 12334566667778899999999888863111222 23688
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC------cccH
Q 036003 367 CMVDLLGRAGRLDEAYRFIDEL-----PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH------GGDY 431 (558)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~~-----~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~ 431 (558)
.+...|...|++++|..+|+++ ....+ ..++..+...|...|++++|...++++++..+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888999999999998888876 11112 2478889999999999999999999998765322 4578
Q ss_pred HhHHHHHHhcCC-hHHHHHHHHHHHh
Q 036003 432 VILSNLCARAGR-WEDVDYLRKLMKD 456 (558)
Q Consensus 432 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 456 (558)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999995 6999999887753
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.68 E-value=2.6e-07 Score=77.83 Aligned_cols=127 Identities=7% Similarity=-0.061 Sum_probs=94.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 036003 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCS 405 (558)
Q Consensus 328 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~ 405 (558)
.+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|.+.+++. .. +.+...|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555566666777777777777776652 2335667777777777888888888877775 22 235678888888999
Q ss_pred hcCCHHHHHHHHHHHHccCCCCcccHHhHHHH--HHhcCChHHHHHHHHHHHh
Q 036003 406 SHNNLGLAKQVIERIFELDDSHGGDYVILSNL--CARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 406 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 456 (558)
..|++++|...++++++..|.+...+..+..+ +.+.|++++|.+.+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999998887777444444 7788999999998887643
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.67 E-value=6.8e-07 Score=78.99 Aligned_cols=144 Identities=8% Similarity=-0.031 Sum_probs=86.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChH
Q 036003 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVD 343 (558)
Q Consensus 264 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 343 (558)
..+...+...|++++|...|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3455566666666666666666665566666666666666666666666666665532 223455555556666666666
Q ss_pred HHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 036003 344 EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFE 422 (558)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 422 (558)
+|...|++..+. .+.+.... +...| +...| ....+..+..++...|++++|.+.|+++++
T Consensus 89 ~A~~~~~~al~~--~~~~~~~~------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQ--LRGNQLID------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHT--TTTCSEEE------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh--CCCccHHH------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666665542 11111000 00000 01222 236778888899999999999999999999
Q ss_pred cCCCC
Q 036003 423 LDDSH 427 (558)
Q Consensus 423 ~~~~~ 427 (558)
..|.+
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 98875
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.66 E-value=1.8e-07 Score=74.98 Aligned_cols=100 Identities=13% Similarity=0.093 Sum_probs=89.4
Q ss_pred CCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhH
Q 036003 358 IVPG-IKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434 (558)
Q Consensus 358 ~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 434 (558)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|.++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3443 456778899999999999999999987 3334 678999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q 036003 435 SNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 435 ~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
+.+|...|++++|.+.|++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998874
No 125
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.65 E-value=1.6e-06 Score=87.19 Aligned_cols=356 Identities=10% Similarity=-0.022 Sum_probs=213.3
Q ss_pred C-CHHHHHHHHccCCCCCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHH
Q 036003 70 S-SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHC 148 (558)
Q Consensus 70 ~-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~ 148 (558)
| +++.|+.+|+++.. .+-. |+++.+..+|++.... .|+...|...+.-..+.+ ...+....+|+
T Consensus 8 ~~~i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~-~~~~~i~~~fe 72 (493)
T 2uy1_A 8 GVELSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVS-QKKFKLYEVYE 72 (493)
T ss_dssp ----CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC-----CTHHHHH
T ss_pred CcchHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhC-chHHHHHHHHH
Confidence 5 36777777776542 2211 7899999999999874 578889988888777662 23466778888
Q ss_pred HHHHh-CCC-ChHHHHHHHHHHHHh----CCChHHHHHHHhccCC-CCcchHHHHHHHHHH-----------------CC
Q 036003 149 FAIKL-GLN-SNLYVCTTLINLYAE----CSDVEAARRIFENISE-PCVVSYNAIITAYAR-----------------SS 204 (558)
Q Consensus 149 ~~~~~-g~~-~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~-----------------~g 204 (558)
.++.. |.. .+...|...+..+.. .++++.+..+|++... |.. .+..+-..|.. .+
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~-~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~ 151 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMG-SLSELWKDFENFELELNKITGKKIVGDTLP 151 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCT-THHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhh-hHHHHHHHHHHHHHHhccccHHHHHHHHhH
Confidence 88765 533 366778877776542 4678889999998865 221 11222111111 11
Q ss_pred CccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--CC-----hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 036003 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALL--GS-----LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277 (558)
Q Consensus 205 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 277 (558)
.+..|..+++.+...--..+...|...+.--... +- .+.+..+|+++.... +.+...|-..+..+.+.|+.+
T Consensus 152 ~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~ 230 (493)
T 2uy1_A 152 IFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKE 230 (493)
T ss_dssp HHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 2233444444433210001223444433332221 11 345677888888754 455778888888888999999
Q ss_pred HHHHHHhccCCC--CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHccCChH
Q 036003 278 DAVSVFDNMSGK--DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ---------VSP---DEITFLGLLYACSHTGLVD 343 (558)
Q Consensus 278 ~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---------~~p---~~~~~~~ll~~~~~~g~~~ 343 (558)
+|..+|++.... +...|. .|....+.++. ++.+.+.- ..+ ....|...+....+.++.+
T Consensus 231 ~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~ 303 (493)
T 2uy1_A 231 KAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLE 303 (493)
T ss_dssp HHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHH
Confidence 999999875432 222222 22222111121 22222210 011 1234555666666778899
Q ss_pred HHHHHHHHchhhcCCCCChhHHHHHHHHHhhcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036003 344 EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG-RLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420 (558)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 420 (558)
.|..+|++. .. . ..+...|...+..-...+ +.+.|..+|+.. ....++..|...+......|+.+.|..+|+++
T Consensus 304 ~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 304 LFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999998 32 1 234455543333333333 699999999886 22223556677778778899999999999998
Q ss_pred HccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 421 FELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 421 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
. .+...+...+..-...|+.+.+.++++++.+
T Consensus 381 ~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 381 E----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp C----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3 3455677777777788999999998887764
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.64 E-value=1.7e-06 Score=80.90 Aligned_cols=124 Identities=8% Similarity=0.005 Sum_probs=66.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHhccCC------C----CHHhHH
Q 036003 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKY-----VKVNTALIDMHAKCGRLDDAVSVFDNMSG------K----DTQAWS 295 (558)
Q Consensus 231 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~----~~~~~~ 295 (558)
+...+...+++++|...++++.+.....+ ..+++.+..+|...|++++|...|+++.+ . ...+|.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 34444444555555555555554321111 12455555555556666555555555431 1 123456
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHccCC-hHHHHHHHHHchh
Q 036003 296 AMIVAYATHGQGHKSILMFEEMMK----AQVSPD-EITFLGLLYACSHTGL-VDEGWNYFYSMRD 354 (558)
Q Consensus 296 ~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~ 354 (558)
.+...|.+.|++++|+..+++..+ .+..+. ...|..+..++...|+ +++|.+.+++...
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 666666677777777666666553 222222 4566666677777773 4777776666554
No 127
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.63 E-value=3e-07 Score=75.50 Aligned_cols=97 Identities=11% Similarity=-0.047 Sum_probs=82.5
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHH
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 438 (558)
+...+..+...+.+.|++++|...|++. ... .+...|..+..++...|++++|...|+++++.+|.++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3455666777888899999999999887 223 36778888999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 036003 439 ARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~ 457 (558)
...|++++|.+.|++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999988763
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.63 E-value=4.5e-07 Score=71.95 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 036003 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-P-IKSTPILWRTLLSS 403 (558)
Q Consensus 326 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~ 403 (558)
...+..+...+...|++++|.+.++++... .+.+...+..+...+.+.|++++|..+++++ . ...+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345566666667777777777777776653 2334566677777777777777777777766 1 12356677788888
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcC
Q 036003 404 CSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442 (558)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 442 (558)
+...|++++|...++++++..|.++..+..+..++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888888888888888888888888777777777665543
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.63 E-value=4.1e-07 Score=73.29 Aligned_cols=116 Identities=9% Similarity=0.001 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 036003 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSS 403 (558)
Q Consensus 326 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~ 403 (558)
...+..+...+...|++++|...|++..+ ..+.+...+..+...|...|++++|.+.+++. .. ..+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 45566666667777777777777777664 22335666777777777777777777777765 22 2356777888888
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCC
Q 036003 404 CSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443 (558)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 443 (558)
+...|++++|.+.|+++++..|.+...+..+..++.+.|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888887788888877776653
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.61 E-value=3.8e-07 Score=73.13 Aligned_cols=116 Identities=9% Similarity=-0.064 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 036003 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSC 404 (558)
Q Consensus 327 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~ 404 (558)
..+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|.+.+++. .. ..+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45556666666777777777777776653 2335666777777777777888877777765 22 23567788888888
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCCh
Q 036003 405 SSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444 (558)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 444 (558)
...|++++|...++++++..|.++..+..++.++.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8999999999999999998888888888888888887765
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.59 E-value=1.3e-07 Score=87.90 Aligned_cols=189 Identities=11% Similarity=-0.004 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036003 261 KVNTALIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337 (558)
Q Consensus 261 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 337 (558)
..+..+...+.+.|++++|...|++.. ..+...|..+..+|.+.|++++|+..+++..+.. +-+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 334445555556666666666665543 2245556666666666666666666666666532 123456666666777
Q ss_pred ccCChHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036003 338 HTGLVDEGWNYFYSMRDKYGIVPG-IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQV 416 (558)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 416 (558)
..|++++|...|++..+. .|+ ...+...+....+..+...... ........+......+.. + ..|++++|.+.
T Consensus 84 ~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~~ 157 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERELEE 157 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHHHH
Confidence 777777777777666542 111 0011111111111111111111 112222233333333322 2 26888899999
Q ss_pred HHHHHccCCCCcccHHhHHHHHHhc-CChHHHHHHHHHHHh
Q 036003 417 IERIFELDDSHGGDYVILSNLCARA-GRWEDVDYLRKLMKD 456 (558)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 456 (558)
++++++.+|.+......+...+.+. +.+++|.++|++..+
T Consensus 158 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 158 CQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9988888888766666666666666 668889999987765
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.57 E-value=3e-06 Score=79.12 Aligned_cols=161 Identities=11% Similarity=0.003 Sum_probs=113.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCC---C------HHhHHHHHHHHHHCCChHHHHHHHHHHHHCCC---CCC--HHH
Q 036003 263 NTALIDMHAKCGRLDDAVSVFDNMSGK---D------TQAWSAMIVAYATHGQGHKSILMFEEMMKAQV---SPD--EIT 328 (558)
Q Consensus 263 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~~ 328 (558)
+...+..+...|++++|.+.++...+. . ...+..+...+...|++++|+..+++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334566677778888887777654321 1 12234455667778889999999888875321 122 357
Q ss_pred HHHHHHHHHccCChHHHHHHHHHchhhcCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHHhC-C------CCC-CHH
Q 036003 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG-----IKHYGCMVDLLGRAGRLDEAYRFIDEL-P------IKS-TPI 395 (558)
Q Consensus 329 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~------~~~-~~~ 395 (558)
++.+...|...|++++|...|++..+.....|+ ..++..+...|.+.|++++|.+.+++. . ... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 888888888999999999999888732111222 257888888999999999999988875 1 111 156
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHHcc
Q 036003 396 LWRTLLSSCSSHNNLGLA-KQVIERIFEL 423 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 423 (558)
+|..+..+|...|++++| ...+++++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 788899999999999999 7888888753
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.55 E-value=6.2e-07 Score=85.57 Aligned_cols=94 Identities=11% Similarity=-0.015 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHH
Q 036003 362 IKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439 (558)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 439 (558)
...|..+..+|.+.|++++|+..+++. ... .+...|..+..+|...|++++|...|+++++++|.+..++..+..++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 457788888888999999999988887 223 367889999999999999999999999999999999999999999999
Q ss_pred hcCChHHH-HHHHHHHH
Q 036003 440 RAGRWEDV-DYLRKLMK 455 (558)
Q Consensus 440 ~~g~~~~A-~~~~~~m~ 455 (558)
+.|++++| ..++++|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998 44666664
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.53 E-value=9.2e-07 Score=80.30 Aligned_cols=134 Identities=11% Similarity=-0.085 Sum_probs=81.0
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC--hhHHHHHHHHHh
Q 036003 296 AMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG--IKHYGCMVDLLG 373 (558)
Q Consensus 296 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~ 373 (558)
.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... . .|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHH
Confidence 34555666677777777776665532 44334444444666777777777777644321 1 111 235566677777
Q ss_pred hcCCHHHHHHHHHhCCCC---CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhH
Q 036003 374 RAGRLDEAYRFIDELPIK---ST--PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434 (558)
Q Consensus 374 ~~g~~~~A~~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 434 (558)
+.|++++|+..|++.... |. .........++.+.|+.++|..+|+++...+|. ...+..|
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 777777777777766111 32 235556666777777888888888877777776 4444333
No 135
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.52 E-value=5.6e-07 Score=72.00 Aligned_cols=96 Identities=6% Similarity=-0.067 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHH
Q 036003 362 IKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439 (558)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 439 (558)
...+..+...+.+.|++++|...|++. ... .+...|..+..++...|++++|+..++++++.+|.++.+|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345667777888888888888888876 223 367788888889999999999999999999999998889999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 036003 440 RAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 440 ~~g~~~~A~~~~~~m~~~ 457 (558)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999888764
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.51 E-value=2.7e-07 Score=79.02 Aligned_cols=118 Identities=7% Similarity=0.058 Sum_probs=76.9
Q ss_pred ccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH-HHhcCCH--HH
Q 036003 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSS-CSSHNNL--GL 412 (558)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~-~~~~g~~--~~ 412 (558)
..|++++|...++..... .+.+...+..+...|...|++++|...|++. ... .+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345666666666666542 2334566666677777777777777777665 112 245566666666 6677777 77
Q ss_pred HHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 413 AKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 413 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
|...++++++.+|.++..+..++.+|...|++++|...+++..+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777777777777777777777777777777777777777664
No 137
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.51 E-value=6.8e-07 Score=69.39 Aligned_cols=99 Identities=9% Similarity=0.043 Sum_probs=80.7
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC--CcccHHhHHH
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS--HGGDYVILSN 436 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~ 436 (558)
+...+..+...+...|++++|...|++. .. ..+...+..+...+...|++++|.+.++++++..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4556667778888888888888888876 22 335677888888888999999999999999998888 8888889999
Q ss_pred HHHhc-CChHHHHHHHHHHHhCCC
Q 036003 437 LCARA-GRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 437 ~~~~~-g~~~~A~~~~~~m~~~g~ 459 (558)
+|.+. |++++|.+.+++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999998876544
No 138
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.48 E-value=2.7e-06 Score=71.60 Aligned_cols=97 Identities=9% Similarity=-0.011 Sum_probs=73.5
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHH
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 438 (558)
+...+..+...+.+.|++++|++.|++. ...| +...|..+..+|...|++++|+..|+++++++|.++..|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3456666777777777777777777776 2223 5677777888888888888888888888888888888888888888
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 036003 439 ARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~ 457 (558)
...|++++|...|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 8888888888888877653
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.47 E-value=2.8e-06 Score=77.09 Aligned_cols=126 Identities=7% Similarity=-0.081 Sum_probs=101.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----HHHHHHHHHH
Q 036003 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP----ILWRTLLSSC 404 (558)
Q Consensus 329 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~l~~~~ 404 (558)
...+...+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+.....|+. ..+..+..++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHH
Confidence 334566788999999999999998752 354336667777899999999999999987434433 3677889999
Q ss_pred HhcCCHHHHHHHHHHHHccC--CC-CcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 405 SSHNNLGLAKQVIERIFELD--DS-HGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
...|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++...
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999998533 33 3446788999999999999999999999874
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.46 E-value=1.4e-06 Score=76.22 Aligned_cols=24 Identities=8% Similarity=-0.068 Sum_probs=11.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHH
Q 036003 228 MLSALSSCALLGSLDLGKWIHEYI 251 (558)
Q Consensus 228 ~~~ll~~~~~~~~~~~a~~~~~~~ 251 (558)
+..+...+...|++++|...+++.
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~a 92 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEE 92 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333444444444555444444443
No 141
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.46 E-value=1.5e-06 Score=75.93 Aligned_cols=132 Identities=14% Similarity=0.061 Sum_probs=61.6
Q ss_pred HHhHHHHHHHHHHCCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC-C---
Q 036003 291 TQAWSAMIVAYATHGQGHKSILMFEEMMK----AQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP-G--- 361 (558)
Q Consensus 291 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~--- 361 (558)
..++..+...+...|++++|...+++..+ .+..| ....+..+...+...|++++|...+++......-.+ +
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 34455555555555555555555555443 11111 123444555555556666666655555443211111 1
Q ss_pred -hhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 036003 362 -IKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKSTP----ILWRTLLSSCSSHNNLGLAKQVIERIFE 422 (558)
Q Consensus 362 -~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 422 (558)
...+..+...+...|++++|...+++. ...++. .++..+...+...|++++|.+.++++++
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 223444455555555555555555443 001111 2234455555555555555555555544
No 142
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.45 E-value=6.5e-07 Score=71.06 Aligned_cols=94 Identities=13% Similarity=-0.042 Sum_probs=82.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhc
Q 036003 364 HYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441 (558)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 441 (558)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++++++|.++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556777888999999999999887 3334 6788889999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhC
Q 036003 442 GRWEDVDYLRKLMKDR 457 (558)
Q Consensus 442 g~~~~A~~~~~~m~~~ 457 (558)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988764
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.44 E-value=8.9e-07 Score=73.16 Aligned_cols=102 Identities=11% Similarity=-0.037 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036003 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSC 404 (558)
Q Consensus 327 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 404 (558)
..+..+...+...|++++|...|+.+... -+.+...|..+..+|...|++++|++.|++. ...| ++..+..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 45666677778888888888888888753 3446777888888888888888888888886 2233 567788889999
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCccc
Q 036003 405 SSHNNLGLAKQVIERIFELDDSHGGD 430 (558)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~~~~~~~ 430 (558)
...|++++|...|+++++..|.++..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 99999999999999999998877654
No 144
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.44 E-value=1.7e-06 Score=70.11 Aligned_cols=98 Identities=10% Similarity=-0.027 Sum_probs=79.6
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHH
Q 036003 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
.+...+..+...+...|++++|...|++. .. +.+...|..+..++...|++++|...++++++.+|.++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35667777788888888888888888776 22 23567888888888888999999999999988888888888889999
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 036003 438 CARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 438 ~~~~g~~~~A~~~~~~m~~~ 457 (558)
|...|++++|...|++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999888887753
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.44 E-value=1.4e-06 Score=75.97 Aligned_cols=170 Identities=10% Similarity=-0.025 Sum_probs=102.0
Q ss_pred HHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH
Q 036003 268 DMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDE 344 (558)
Q Consensus 268 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 344 (558)
......|+++++.+.++.-.+. ....+..+...+...|++++|+..|++..+.. |+...+... ....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~~~ 81 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------ILLD 81 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hHHH
Confidence 3344456666666666543322 34456667777777788888888777777632 221100000 0000
Q ss_pred HHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 036003 345 GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422 (558)
Q Consensus 345 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 422 (558)
.... .....+..+..+|.+.|++++|+..+++. .. ..+...+..+..++...|++++|...|+++++
T Consensus 82 ---~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 82 ---KKKN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp ---HHHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---HHHH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 0000 01356777788888888888888888876 22 33677888899999999999999999999999
Q ss_pred cCCCCcccHHhHHHHHHhcCChHHHH-HHHHHHHhCC
Q 036003 423 LDDSHGGDYVILSNLCARAGRWEDVD-YLRKLMKDRG 458 (558)
Q Consensus 423 ~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~g 458 (558)
..|.+..++..+..++...++.+++. ..+..|...|
T Consensus 151 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 151 LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999998888888777 5566554443
No 146
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.43 E-value=0.00011 Score=68.89 Aligned_cols=173 Identities=11% Similarity=0.045 Sum_probs=113.2
Q ss_pred HHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C-CH
Q 036003 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG-SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC-G-RL 276 (558)
Q Consensus 200 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~ 276 (558)
..+.+..++|+++++++...+ +-+...++.--.++...| .++++..+++.+.... +-+..+|+.-..++.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 334455567888888888753 234445666656666667 5888888888888765 44566676666666665 6 77
Q ss_pred HHHHHHHhccCCC---CHHhHHHHHHHHHHCCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----
Q 036003 277 DDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGH--------KSILMFEEMMKAQVSPDEITFLGLLYACSHTGL---- 341 (558)
Q Consensus 277 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---- 341 (558)
++++++++.+.+. |..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence 8888888887754 5566666555555555554 788888888875433 66677766666666665
Q ss_pred ---hHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCC
Q 036003 342 ---VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377 (558)
Q Consensus 342 ---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 377 (558)
++++++.+.+... ..+-|...|+-+-..+.+.|+
T Consensus 221 ~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 221 SRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCC
Confidence 5677777777665 234456666666666665554
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.42 E-value=3.3e-06 Score=66.08 Aligned_cols=107 Identities=12% Similarity=0.000 Sum_probs=58.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHH
Q 036003 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCS 405 (558)
Q Consensus 328 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~ 405 (558)
.+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...+++. ... .+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444444555555555555555555442 1224445555555555556666665555554 112 24555666666666
Q ss_pred hcCCHHHHHHHHHHHHccCCCCcccHHhHHH
Q 036003 406 SHNNLGLAKQVIERIFELDDSHGGDYVILSN 436 (558)
Q Consensus 406 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 436 (558)
..|++++|.+.++++++.+|.++..+..+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 6666666666666666666665555444433
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.40 E-value=2.1e-06 Score=68.95 Aligned_cols=99 Identities=10% Similarity=-0.016 Sum_probs=89.3
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHH
Q 036003 359 VPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSN 436 (558)
Q Consensus 359 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 436 (558)
+.+...+..+...+.+.|++++|.+.|++. ...| +...+..+...+...|++++|.+.++++++..|.++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345677888999999999999999999987 4444 67889999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 036003 437 LCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 437 ~~~~~g~~~~A~~~~~~m~~~ 457 (558)
+|.+.|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.39 E-value=2.5e-06 Score=67.53 Aligned_cols=96 Identities=14% Similarity=0.195 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHH
Q 036003 362 IKHYGCMVDLLGRAGRLDEAYRFIDEL-P-IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439 (558)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 439 (558)
...+..+...+...|++++|.++++++ . .+.+..++..+...+...|++++|...++++++..|.++.++..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999987 2 23467889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 036003 440 RAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 440 ~~g~~~~A~~~~~~m~~~ 457 (558)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 150
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.39 E-value=1.5e-06 Score=69.62 Aligned_cols=94 Identities=6% Similarity=-0.033 Sum_probs=75.9
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcc-------cHHh
Q 036003 363 KHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG-------DYVI 433 (558)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~ 433 (558)
..+..+...+.+.|++++|++.|++. ...| +...|..+..+|...|++++|++.++++++++|.+.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667788888888888888888876 3334 5678888899999999999999999999988876543 5667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 036003 434 LSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 434 l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
++.+|...|++++|.+.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 77888888999999999988765
No 151
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.38 E-value=6e-06 Score=69.29 Aligned_cols=128 Identities=11% Similarity=-0.030 Sum_probs=89.0
Q ss_pred HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 036003 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371 (558)
Q Consensus 292 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 371 (558)
..|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++.... .+.+...+..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 346667777777788888888888777642 225667777777788888888888888887763 23456677778888
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHc
Q 036003 372 LGRAGRLDEAYRFIDEL-PIKS-TPILW--RTLLSSCSSHNNLGLAKQVIERIFE 422 (558)
Q Consensus 372 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~ 422 (558)
+...|++++|.+.|++. ...| +...+ ...+..+...|++++|...+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888776 2222 34444 3333446677888888888877654
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.38 E-value=2.5e-06 Score=66.79 Aligned_cols=98 Identities=11% Similarity=0.096 Sum_probs=87.4
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHH
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 438 (558)
....+..+...+...|++++|...|++. .. +.+...+..+...+...|++++|...++++++..|.++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3456778889999999999999999987 22 346788899999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 036003 439 ARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~g 458 (558)
...|++++|.+.+++..+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999987643
No 153
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.37 E-value=2.4e-06 Score=72.98 Aligned_cols=126 Identities=10% Similarity=0.090 Sum_probs=94.8
Q ss_pred HHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHH-HhhcCCH--
Q 036003 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL-LGRAGRL-- 378 (558)
Q Consensus 302 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~-- 378 (558)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|++..+. .+.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 34577788888888877643 235677888888888889999999988888763 23456677778877 7788888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCccc
Q 036003 379 DEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430 (558)
Q Consensus 379 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 430 (558)
++|...|++. ...| +...+..+...+...|++++|...|+++++..|.+...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 9999988887 2233 56788888999999999999999999999999887543
No 154
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.37 E-value=1.7e-06 Score=71.55 Aligned_cols=98 Identities=8% Similarity=-0.009 Sum_probs=60.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036003 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCS 405 (558)
Q Consensus 328 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~ 405 (558)
.+..+...+.+.|++++|...|+++... -+.+...|..+..+|.+.|++++|+..|++. ...| ++..|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 4445555556666666666666666542 2334556666666666666666666666665 2223 4556667777777
Q ss_pred hcCCHHHHHHHHHHHHccCCCC
Q 036003 406 SHNNLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 406 ~~g~~~~a~~~~~~~~~~~~~~ 427 (558)
..|++++|...|++++++.|++
T Consensus 116 ~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCH
T ss_pred HcCCHHHHHHHHHHHHHhCCCH
Confidence 7777777777777777777654
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=4e-06 Score=68.80 Aligned_cols=96 Identities=13% Similarity=0.067 Sum_probs=63.9
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHH
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 435 (558)
+...+..+...+...|++++|.+.|++. ...|+ ...|..+..++...|++++|...++++++..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3455566666666666666666666665 34454 455666666677777777777777777777776666677777
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 036003 436 NLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 436 ~~~~~~g~~~~A~~~~~~m~~ 456 (558)
.+|...|++++|...+++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777776655
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.35 E-value=4.6e-06 Score=70.17 Aligned_cols=108 Identities=10% Similarity=-0.001 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 036003 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSS 403 (558)
Q Consensus 326 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~ 403 (558)
...+..+...+...|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..|++. ...| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 355666677777788888888888877753 2335677788888888888888888888876 2233 57888999999
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCcccHHhHH
Q 036003 404 CSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435 (558)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 435 (558)
+...|++++|...|+++++++|.+...+....
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999887654433
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.35 E-value=2.6e-06 Score=69.80 Aligned_cols=104 Identities=10% Similarity=-0.035 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 036003 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSC 404 (558)
Q Consensus 327 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~ 404 (558)
..+..+...+.+.|++++|...|+.+... -+.+...|..+..+|.+.|++++|...|++. ... .++..+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34555566677778888888888877753 2345677777888888888888888888876 222 3556778888889
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCcccHH
Q 036003 405 SSHNNLGLAKQVIERIFELDDSHGGDYV 432 (558)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 432 (558)
...|++++|...|+++++..|.++....
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 9999999999999999998887765543
No 158
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.35 E-value=0.00043 Score=64.96 Aligned_cols=174 Identities=10% Similarity=-0.048 Sum_probs=119.1
Q ss_pred HHHhcCCCchHHHHHHHHhHHCCCCCCc-ccHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 036003 95 RGYSRSKTPIRAIFLFVELLNSGLLPDD-YSFPSLLKACACVGAE-ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172 (558)
Q Consensus 95 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 172 (558)
....+.+..++|+++++++... .|+. ..|+.--..+... + .+++++..++.++... +-+..+|+.-..++.+.
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l--~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSL--NKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHh
Confidence 3334455667899999999885 4444 4466665666666 6 6999999999999865 55777888887777776
Q ss_pred -C-ChHHHHHHHhccCCC---CcchHHHHHHHHHHCCCcc--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036003 173 -S-DVEAARRIFENISEP---CVVSYNAIITAYARSSRPN--------EALSLFRELQERNLKPTDVTMLSALSSCALLG 239 (558)
Q Consensus 173 -g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 239 (558)
+ +.++++++++++.+. |-.+|+--...+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+
T Consensus 137 ~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTST
T ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcc
Confidence 6 889999999998874 4455655555555555565 8888888888764 346667777766666666
Q ss_pred C-------hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036003 240 S-------LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275 (558)
Q Consensus 240 ~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 275 (558)
. ++++.+.+.++.... +-|...|+-+-..+.+.|+
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 5 566777777766654 4455566555555555443
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.35 E-value=3.8e-06 Score=67.06 Aligned_cols=109 Identities=7% Similarity=-0.105 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036003 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSC 404 (558)
Q Consensus 327 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 404 (558)
..+..+...+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34455555666667777777777666652 2334566777777777777777777777765 2233 466777788888
Q ss_pred HhcCCHHHHHHHHHHHHccC------CCCcccHHhHHHH
Q 036003 405 SSHNNLGLAKQVIERIFELD------DSHGGDYVILSNL 437 (558)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~ 437 (558)
...|++++|...|+++++.+ |.+......+..+
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 88888888888888888887 6655555544443
No 160
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.35 E-value=1.3e-06 Score=80.94 Aligned_cols=47 Identities=0% Similarity=-0.123 Sum_probs=26.9
Q ss_pred cCChHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHhhc-CCHHHHHHHHHhC
Q 036003 339 TGLVDEGWNYFYSMRDKYGIVPG-IKHYGCMVDLLGRA-GRLDEAYRFIDEL 388 (558)
Q Consensus 339 ~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~-g~~~~A~~~~~~~ 388 (558)
.|++++|.+.++...+ ..|+ ......+...+.+. +.+++|.++|.+.
T Consensus 148 ~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 148 AAERERELEECQRNHE---GHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HHHHHHHHTTTSGGGT---TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhc---cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677777777766653 2333 33333344444444 5677777777766
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=8.3e-06 Score=66.86 Aligned_cols=111 Identities=8% Similarity=-0.121 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 036003 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG----IKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWR 398 (558)
Q Consensus 325 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~ 398 (558)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++|...+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 345555566666666666666666666653 2343 456666677777777777777777665 2223 566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHH
Q 036003 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438 (558)
Q Consensus 399 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 438 (558)
.+..++...|++++|...|+++++..|.+...+..+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 7888888888888888888888888887766665555443
No 162
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.27 E-value=5.5e-06 Score=66.14 Aligned_cols=97 Identities=11% Similarity=0.052 Sum_probs=87.3
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHH
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 438 (558)
+...+..+...+...|++++|...|++. .. ..+...+..+...+...|++++|.+.++++++..|.++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788889999999999999999987 22 346788999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 036003 439 ARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~ 457 (558)
...|++++|...+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999998774
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.27 E-value=7.9e-06 Score=65.23 Aligned_cols=93 Identities=9% Similarity=0.075 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-------cccHHhH
Q 036003 364 HYGCMVDLLGRAGRLDEAYRFIDEL-P-IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH-------GGDYVIL 434 (558)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l 434 (558)
.+..+...+...|++++|...|++. . .+.+...+..+...+...|++++|...++++++..|.+ ..++..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4445555556666666666666554 1 12245556666666666666666666666666665544 4556666
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 036003 435 SNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 435 ~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
+.+|...|++++|.+.+++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 6666666666666666666655
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.26 E-value=6.3e-06 Score=66.72 Aligned_cols=100 Identities=7% Similarity=-0.136 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHH
Q 036003 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLS 402 (558)
Q Consensus 325 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~ 402 (558)
+...+..+...+...|++++|...|+..... .+.+...+..+..++...|++++|...+++. ... .+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4566777777777777788887777777653 2335667777778888888888888887776 222 35678888888
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCC
Q 036003 403 SCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 403 ~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
++...|++++|...|+++++..|.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888899999999999999888776
No 165
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.25 E-value=0.00027 Score=66.05 Aligned_cols=192 Identities=8% Similarity=-0.015 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCC-hHHHHHHH
Q 036003 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG--RLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQ-GHKSILMF 314 (558)
Q Consensus 241 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~a~~~~ 314 (558)
++++..+++.+.... +-+..+|+.-..++.+.| .+++++++++.+.+ +|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455556666665543 334555555555555555 36667776666652 355666666666666666 46777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcc--------------CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhc-----
Q 036003 315 EEMMKAQVSPDEITFLGLLYACSHT--------------GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA----- 375 (558)
Q Consensus 315 ~~m~~~g~~p~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 375 (558)
.++++..+. |...|+.....+.+. +.++++++.+..... -.+-|...|+-+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccc
Confidence 777765322 445555444443333 335666666666664 2333455555444444433
Q ss_pred ------CCHHHHHHHHHhC-CCCCCHHHHHH--HH---HHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHH
Q 036003 376 ------GRLDEAYRFIDEL-PIKSTPILWRT--LL---SSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 376 ------g~~~~A~~~~~~~-~~~~~~~~~~~--l~---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
+.++++++.++++ ...||. .|.. ++ .+....|..++....+.++.+++|....-|..+...
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 3456666666665 333432 2221 11 112234566677777777777777665555544433
No 166
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.24 E-value=3.9e-06 Score=68.71 Aligned_cols=91 Identities=13% Similarity=0.020 Sum_probs=70.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC--------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcc-------C
Q 036003 366 GCMVDLLGRAGRLDEAYRFIDEL-PIKS--------T-----PILWRTLLSSCSSHNNLGLAKQVIERIFEL-------D 424 (558)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~~-~~~~--------~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~ 424 (558)
......+.+.|++++|+..|++. ...| + ...|..+..++...|++++|+..+++++++ +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 33444455555666665555554 1111 1 238888999999999999999999999999 9
Q ss_pred CCCcccH----HhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 425 DSHGGDY----VILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 425 ~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
|++...| ...+.++...|++++|...|++..+
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9998899 9999999999999999999998875
No 167
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.22 E-value=8.4e-06 Score=68.37 Aligned_cols=64 Identities=9% Similarity=0.089 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
...|..+..+|...|++++|+..++++++++|.++.+|..++.+|...|++++|...|++....
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3577788888889999999999999999999998889999999999999999999998888764
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.22 E-value=1.3e-05 Score=80.24 Aligned_cols=84 Identities=6% Similarity=-0.004 Sum_probs=37.3
Q ss_pred HHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH
Q 036003 270 HAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346 (558)
Q Consensus 270 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 346 (558)
+.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|+..+++..+.. +-+...+..+..++...|++++|.
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3444555555555444321 134444444444444444444444444444421 112334444444444444444444
Q ss_pred HHHHHchh
Q 036003 347 NYFYSMRD 354 (558)
Q Consensus 347 ~~~~~~~~ 354 (558)
+.|++..+
T Consensus 95 ~~~~~al~ 102 (477)
T 1wao_1 95 RDYETVVK 102 (477)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 169
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.21 E-value=1.6e-05 Score=75.77 Aligned_cols=131 Identities=8% Similarity=-0.007 Sum_probs=99.4
Q ss_pred CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCChHHHHHHHHHchhh
Q 036003 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD--------------EITFLGLLYACSHTGLVDEGWNYFYSMRDK 355 (558)
Q Consensus 290 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 355 (558)
+...|..+...|.+.|++++|+..|++..+...... ...|..+..++.+.|++++|...+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677777778888888888888888777432211 477888888888999999999999988863
Q ss_pred cCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHc
Q 036003 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLA-KQVIERIFE 422 (558)
Q Consensus 356 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 422 (558)
.+.+...|..+..+|...|++++|...|++. ...| +...+..+..++...|+.++| ...+++|++
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888889999999999999999887 3334 567888888888888888888 456666653
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=1.3e-05 Score=79.32 Aligned_cols=161 Identities=9% Similarity=-0.119 Sum_probs=81.8
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHccCChHHHHHHHHHchhhc---CCCC-ChhH
Q 036003 294 WSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDEI----TFLGLLYACSHTGLVDEGWNYFYSMRDKY---GIVP-GIKH 364 (558)
Q Consensus 294 ~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~ 364 (558)
+..++..|...|++++|.+.+.++...- ..++.. ..+.+-..+...|+++.|..++....... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3445555555555555555555443310 011111 11122222334456666666655544311 1111 1345
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC---CC----cc
Q 036003 365 YGCMVDLLGRAGRLDEAYRFIDEL-----P--IKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDD---SH----GG 429 (558)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~----~~ 429 (558)
+..|...|...|++++|..++++. . .++ ...++..++..|...|++++|..++++++...+ .. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 556666666777777776666654 1 111 134566666677777777777777776655431 11 12
Q ss_pred cHHhHHHHHHhcCChHHHHHHHHHH
Q 036003 430 DYVILSNLCARAGRWEDVDYLRKLM 454 (558)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m 454 (558)
.+..++..+...|++++|...|.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3455556666667777776665554
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.20 E-value=4.1e-06 Score=67.05 Aligned_cols=91 Identities=13% Similarity=0.083 Sum_probs=61.9
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC---cccHHhHHHHH
Q 036003 367 CMVDLLGRAGRLDEAYRFIDEL-PIKST-P---ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH---GGDYVILSNLC 438 (558)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~~-~~~~~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~ 438 (558)
.+...+.+.|++++|.+.|++. ...|+ . ..+..+..++...|++++|...++++++..|.+ +.++..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3455566677777777777665 11222 2 456666777777777777777777777777776 55577777777
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 036003 439 ARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~ 457 (558)
...|++++|...|+++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777653
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.20 E-value=9.7e-06 Score=62.63 Aligned_cols=99 Identities=12% Similarity=-0.041 Sum_probs=66.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 036003 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS---TPILWRTLLSS 403 (558)
Q Consensus 328 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~ 403 (558)
.+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.|++. ...| +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4445555666667777777776666652 2334556666777777777777777777765 2223 46677777788
Q ss_pred HHhc-CCHHHHHHHHHHHHccCCCCc
Q 036003 404 CSSH-NNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 404 ~~~~-g~~~~a~~~~~~~~~~~~~~~ 428 (558)
+... |++++|.+.++++++..|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888887777653
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=7.3e-05 Score=73.90 Aligned_cols=191 Identities=11% Similarity=0.051 Sum_probs=89.6
Q ss_pred HHHHHHCCCccHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-Cc
Q 036003 197 ITAYARSSRPNEALSLFRELQERNLKPTD----------------VTMLSALSSCALLGSLDLGKWIHEYIKKYGLD-KY 259 (558)
Q Consensus 197 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 259 (558)
...+.+.|++++|++.|....+....... ..+..+...|...|++++|..++..+.+.-.. .+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34566778888888888877765322110 12455566666666666666666655432101 11
Q ss_pred h----hHHHHHHHHHHhcCCHHHHHHHHhccCCC---------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHC--CC--
Q 036003 260 V----KVNTALIDMHAKCGRLDDAVSVFDNMSGK---------DTQAWSAMIVAYATHGQGHKSILMFEEMMKA--QV-- 322 (558)
Q Consensus 260 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~-- 322 (558)
. .+.+.+...+...|++++|..+++..... -..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12222333333445555555555443210 1223445555555555555555555554431 11
Q ss_pred CCC-HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 036003 323 SPD-EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG-----IKHYGCMVDLLGRAGRLDEAYRFIDE 387 (558)
Q Consensus 323 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~ 387 (558)
.+. ...+..++..|...|++++|..++++......-.++ ...+..+...+...|++++|...|.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 111 134444555555555555555555544432110011 12333444444455555555554444
No 174
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.19 E-value=1.7e-05 Score=79.10 Aligned_cols=144 Identities=10% Similarity=0.033 Sum_probs=100.3
Q ss_pred CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHH
Q 036003 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369 (558)
Q Consensus 290 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 369 (558)
....|..+...|.+.|++++|+..|++..+. .|+...+ . -+... +... .....|..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~----~~~~-----~~~~~~~nla 324 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK----ASES-----FLLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH----HHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH----HHHH-----HHHHHHHHHH
Confidence 3445667777777777777777777777652 1211000 0 00000 0000 0245778888
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHH
Q 036003 370 DLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447 (558)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 447 (558)
.+|.+.|++++|+..+++. ... .+...|..+..+|...|++++|...|+++++++|.+..++..+..++.+.|+++++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999887 223 36788999999999999999999999999999999999999999999999999887
Q ss_pred HH-HHHHHH
Q 036003 448 DY-LRKLMK 455 (558)
Q Consensus 448 ~~-~~~~m~ 455 (558)
.+ .+++|.
T Consensus 405 ~~~~~~~~f 413 (457)
T 1kt0_A 405 DRRIYANMF 413 (457)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 64 455554
No 175
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.17 E-value=5e-06 Score=72.48 Aligned_cols=148 Identities=11% Similarity=0.005 Sum_probs=83.5
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCH----------------
Q 036003 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDT---------------- 291 (558)
Q Consensus 231 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~---------------- 291 (558)
........|+++.+...++.-.... ......+..+...+.+.|++++|...|++... .+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3344455667777766665332211 12345667788899999999999999998753 222
Q ss_pred HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 036003 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371 (558)
Q Consensus 292 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 371 (558)
..|..+..+|...|++++|+..+++..+.. +.+...+..+..++...|++++|...|++..+. .+.+...+..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHH
Confidence 556666667777777777777777766642 224456666666666667777777666666542 12234455555555
Q ss_pred HhhcCCHHHHH
Q 036003 372 LGRAGRLDEAY 382 (558)
Q Consensus 372 ~~~~g~~~~A~ 382 (558)
+...++..++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.16 E-value=3.7e-06 Score=84.23 Aligned_cols=85 Identities=14% Similarity=0.049 Sum_probs=42.3
Q ss_pred HHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCH
Q 036003 300 AYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378 (558)
Q Consensus 300 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 378 (558)
.+.+.|++++|+..|++..+. .| +...+..+..++.+.|++++|.+.+++..+ --+.+...+..+..+|.+.|++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCH
Confidence 344455555555555555553 22 244555555555555555555555555543 1222344444555555555555
Q ss_pred HHHHHHHHhC
Q 036003 379 DEAYRFIDEL 388 (558)
Q Consensus 379 ~~A~~~~~~~ 388 (558)
++|.+.|++.
T Consensus 91 ~eA~~~~~~a 100 (477)
T 1wao_1 91 RAALRDYETV 100 (477)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.15 E-value=1.7e-06 Score=68.12 Aligned_cols=82 Identities=15% Similarity=0.052 Sum_probs=49.3
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHH
Q 036003 375 AGRLDEAYRFIDEL-PI---KS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDY 449 (558)
Q Consensus 375 ~g~~~~A~~~~~~~-~~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 449 (558)
.|++++|+..|++. .. .| +...+..+..++...|++++|+..|+++++.+|.++.++..++.+|.+.|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45555666666554 22 12 234566666666666677777777777666666666666666666666777777766
Q ss_pred HHHHHHh
Q 036003 450 LRKLMKD 456 (558)
Q Consensus 450 ~~~~m~~ 456 (558)
.+++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.14 E-value=1.8e-05 Score=63.04 Aligned_cols=106 Identities=5% Similarity=-0.062 Sum_probs=56.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----C-CCCC----HHHHHH
Q 036003 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL----P-IKST----PILWRT 399 (558)
Q Consensus 329 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~-~~~~----~~~~~~ 399 (558)
+..+...+...|++++|...|++.... .+.+...+..+...|...|++++|...+++. + ..++ ..++..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 334444444455555555555554432 1223444455555555555555555555544 1 0111 455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHH
Q 036003 400 LLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 400 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
+..++...|++++|.+.|+++++..| ++.....+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 77777777777777777777777666 34444444333
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.14 E-value=1.6e-05 Score=66.08 Aligned_cols=93 Identities=10% Similarity=0.058 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC------CCcc
Q 036003 364 HYGCMVDLLGRAGRLDEAYRFIDEL----PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDD------SHGG 429 (558)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~ 429 (558)
.+..+...+...|++++|.+.+++. +..++ ...+..+...+...|++++|.+.++++++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4445555555556666665555543 10111 34556667777777888888888777765431 1134
Q ss_pred cHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 430 DYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 567778888888888888888877654
No 180
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.12 E-value=4.4e-05 Score=60.89 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=13.6
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHH
Q 036003 294 WSAMIVAYATHGQGHKSILMFEEMMK 319 (558)
Q Consensus 294 ~~~li~~~~~~~~~~~a~~~~~~m~~ 319 (558)
|..+..++...|++++|++.|++...
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444455555555555555555544
No 181
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.11 E-value=1.5e-05 Score=63.09 Aligned_cols=96 Identities=8% Similarity=-0.058 Sum_probs=63.6
Q ss_pred HHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 036003 330 LGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSH 407 (558)
Q Consensus 330 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 407 (558)
..+...+.+.|++++|...|++..+. -+.+...|..+..++.+.|++++|+..|++. ...| +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34445566677777777777777652 2335666777777777777777777777775 2233 556777777888888
Q ss_pred CCHHHHHHHHHHHHccCCCC
Q 036003 408 NNLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 408 g~~~~a~~~~~~~~~~~~~~ 427 (558)
|++++|...++++++.+|.+
T Consensus 99 g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCcCC
Confidence 88888888888888877764
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.10 E-value=3.1e-05 Score=61.75 Aligned_cols=99 Identities=12% Similarity=0.032 Sum_probs=65.8
Q ss_pred HHHHHHccCChHHHHHHHHHchhhcCCCCCh---hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C---HHHHHHHHHH
Q 036003 332 LLYACSHTGLVDEGWNYFYSMRDKYGIVPGI---KHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-T---PILWRTLLSS 403 (558)
Q Consensus 332 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~---~~~~~~l~~~ 403 (558)
+...+...|++++|...|+.+.+. .+.+. ..+..+..++.+.|++++|...|++. ...| + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 344556667777777777776653 11222 45666677777777777777777765 2222 2 4567777788
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCcccHH
Q 036003 404 CSSHNNLGLAKQVIERIFELDDSHGGDYV 432 (558)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 432 (558)
+...|++++|...|+++++..|.++....
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 88888888888888888888877654433
No 183
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.10 E-value=1.8e-05 Score=78.77 Aligned_cols=123 Identities=9% Similarity=0.072 Sum_probs=95.8
Q ss_pred HHHccCChHHHHHHHHHchhhcC--CCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCH-HHHH
Q 036003 335 ACSHTGLVDEGWNYFYSMRDKYG--IVP----GIKHYGCMVDLLGRAGRLDEAYRFIDEL---------PIKSTP-ILWR 398 (558)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~~~~-~~~~ 398 (558)
.+...|++++|..++++..+... +.+ ...+++.|...|...|++++|+.++++. +..|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35577888888888877765321 122 2467888889999999999998888775 334443 6789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHc-----cCCCCccc---HHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 399 TLLSSCSSHNNLGLAKQVIERIFE-----LDDSHGGD---YVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 399 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
.|...|...|++++|+.+++++++ +||+++.+ ...+..++...|.+++|..+++++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876 46777654 567788888999999999999999764
No 184
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.06 E-value=0.00091 Score=62.46 Aligned_cols=180 Identities=8% Similarity=0.015 Sum_probs=131.1
Q ss_pred HHHHHHHHhccC---CCCHHhHHHHHHHHHHCCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-hHHHHHHH
Q 036003 276 LDDAVSVFDNMS---GKDTQAWSAMIVAYATHGQ--GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL-VDEGWNYF 349 (558)
Q Consensus 276 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~ 349 (558)
+++++.+++.+. .++..+|+.-.-.+...++ +++++.+++++.+...+ |...|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 567777777765 3478888888888888884 89999999999986433 66777777777777888 58999999
Q ss_pred HHchhhcCCCCChhHHHHHHHHHhhc--------------CCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc------
Q 036003 350 YSMRDKYGIVPGIKHYGCMVDLLGRA--------------GRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSH------ 407 (558)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~------ 407 (558)
..+.+. -+-|...|+.....+.+. +.++++++.+++. .. +.|...|+-+-..+.+.
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999874 345667777666555544 4578888888886 22 34778887655555444
Q ss_pred -----CCHHHHHHHHHHHHccCCCCcccHHhHHHH---HHhcCChHHHHHHHHHHHhCC
Q 036003 408 -----NNLGLAKQVIERIFELDDSHGGDYVILSNL---CARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 408 -----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~m~~~g 458 (558)
+.++++++.++++++..|++.-.+..++.. ....|..+++...+.++.+.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 457899999999999999885444443322 224677888999999998743
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.04 E-value=7.2e-06 Score=78.16 Aligned_cols=147 Identities=9% Similarity=-0.026 Sum_probs=83.1
Q ss_pred HHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 036003 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370 (558)
Q Consensus 291 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 370 (558)
...|..+...+.+.|++++|+..|++... ..|+... +...|+.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 44577777888888999999999998877 3454332 22334444433222 1 136788888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHH-hcCChHHH
Q 036003 371 LLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA-RAGRWEDV 447 (558)
Q Consensus 371 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 447 (558)
+|.+.|++++|+..+++. ...| +...|..+..+|...|++++|...|+++++++|.+..++..|..+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 3333 67888999999999999999999999999999998888888877743 44567778
Q ss_pred HHHHHHHHhC
Q 036003 448 DYLRKLMKDR 457 (558)
Q Consensus 448 ~~~~~~m~~~ 457 (558)
...|++|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888887654
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.04 E-value=2e-05 Score=65.42 Aligned_cols=131 Identities=11% Similarity=0.034 Sum_probs=73.9
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC----hhH
Q 036003 294 WSAMIVAYATHGQGHKSILMFEEMMKAQV-SPD----EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG----IKH 364 (558)
Q Consensus 294 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~ 364 (558)
+..+...|...|++++|+..+++..+... .++ ...+..+...+...|++++|...+++......-..+ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 44444455555555555555554443110 011 134555555666666666666666665442111111 345
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 036003 365 YGCMVDLLGRAGRLDEAYRFIDEL----PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELD 424 (558)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 424 (558)
+..+...+...|++++|.+.+++. ....+ ..++..+...+...|++++|.+.++++++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 556666777777777777776654 11111 3456677788888889999988888887654
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.03 E-value=2.4e-05 Score=75.40 Aligned_cols=139 Identities=6% Similarity=-0.080 Sum_probs=102.8
Q ss_pred HHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 036003 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370 (558)
Q Consensus 291 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 370 (558)
...|..+...+.+.|++++|+..|++..+. .++. ......+ .... .-+.+...|..+..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~~-------~~~~--~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDA-------DGAK--LQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHH-------HHGG--GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccChH-------HHHH--HHHHHHHHHHHHHH
Confidence 345777777888888888888888877652 1110 0000111 1110 01124567888999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHH
Q 036003 371 LLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVD 448 (558)
Q Consensus 371 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 448 (558)
+|.+.|++++|++.+++. ...| +...|..+..+|...|++++|...|++++++.|.+...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 4445 57888999999999999999999999999999999999999999998888887776
Q ss_pred HH
Q 036003 449 YL 450 (558)
Q Consensus 449 ~~ 450 (558)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.00 E-value=5.4e-06 Score=65.20 Aligned_cols=91 Identities=10% Similarity=-0.006 Sum_probs=64.5
Q ss_pred cCChHHHHHHHHHchhhcC--CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 036003 339 TGLVDEGWNYFYSMRDKYG--IVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAK 414 (558)
Q Consensus 339 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~ 414 (558)
.|++++|...|++..+. + -+.+...+..+...|.+.|++++|++.|++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46777777777777642 2 1234566777788888888888888888876 2233 5677888888888889999999
Q ss_pred HHHHHHHccCCCCccc
Q 036003 415 QVIERIFELDDSHGGD 430 (558)
Q Consensus 415 ~~~~~~~~~~~~~~~~ 430 (558)
..++++++..|.++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 9999988888877544
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.00 E-value=1.7e-05 Score=66.39 Aligned_cols=68 Identities=15% Similarity=0.066 Sum_probs=57.9
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...|+++++++|.++
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 3467888888899999999999988886 3333 678889999999999999999999999999999876
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.98 E-value=2.1e-05 Score=74.89 Aligned_cols=152 Identities=13% Similarity=0.042 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036003 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339 (558)
Q Consensus 260 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 339 (558)
...+..+...+.+.|++++|...|++....+.... .+...++.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 44567788899999999999999998653322111 1222333333332221 13677788888999
Q ss_pred CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCCHHHHHHH
Q 036003 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST-PILWRTLLSS-CSSHNNLGLAKQV 416 (558)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~-~~~~g~~~~a~~~ 416 (558)
|++++|...+++..+. -+.+...|..+..+|...|++++|...|++. ...|+ ...+..+... ....+..+++...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988863 2446788888999999999999999999987 44554 3445555544 2345677888899
Q ss_pred HHHHHccCCCCc
Q 036003 417 IERIFELDDSHG 428 (558)
Q Consensus 417 ~~~~~~~~~~~~ 428 (558)
|+++++..|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999988887654
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.88 E-value=2.4e-05 Score=60.43 Aligned_cols=92 Identities=12% Similarity=-0.002 Sum_probs=73.4
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC------cccHH
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH------GGDYV 432 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~ 432 (558)
+...+..+...+.+.|++++|.+.|++. ... .+...|..+..++...|++++|++.++++++..|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777888888899999999988886 223 367788889999999999999999999999999988 66677
Q ss_pred hHHHHHHhcCChHHHHHHHH
Q 036003 433 ILSNLCARAGRWEDVDYLRK 452 (558)
Q Consensus 433 ~l~~~~~~~g~~~~A~~~~~ 452 (558)
.+..++...|++++|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 77777777777766655544
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.87 E-value=5.5e-05 Score=57.33 Aligned_cols=66 Identities=23% Similarity=0.205 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 392 STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
.+...+..+..++...|++++|+..|+++++.+|.++.+|..++.+|...|++++|.+.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 367788899999999999999999999999999999999999999999999999999999988753
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.87 E-value=4.5e-05 Score=62.41 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CC-------CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHccCCCCccc
Q 036003 364 HYGCMVDLLGRAGRLDEAYRFIDEL-PI-------KST-PILW----RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430 (558)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~~-~~-------~~~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 430 (558)
.|..+..++.+.|++++|+..+++. .. .|+ ...| .....++...|++++|+..|++++++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666666667666666666554 33 665 4677 889999999999999999999999999988766
Q ss_pred HHhHHH
Q 036003 431 YVILSN 436 (558)
Q Consensus 431 ~~~l~~ 436 (558)
+..+-.
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 554433
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.84 E-value=0.00065 Score=69.29 Aligned_cols=168 Identities=11% Similarity=0.048 Sum_probs=122.7
Q ss_pred HHHHHHHHhccCC---CCHHhHHHHHHHHHHCCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--
Q 036003 276 LDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQ----------GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG-- 340 (558)
Q Consensus 276 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-- 340 (558)
-++|++.++.+.. .+..+|+.--.++...|+ ++++++.++++.+...+ +...|..-.-.+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 3455666666542 244556655555555555 78888888888875322 5667777777777778
Q ss_pred ChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----------
Q 036003 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG-RLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSH---------- 407 (558)
Q Consensus 341 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~---------- 407 (558)
+++++.+.++++.+. -+-+...|+.-...+.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 668888888888873 3446677777777777777 788888888887 3344 667787777666553
Q ss_pred ----CCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHH
Q 036003 408 ----NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWED 446 (558)
Q Consensus 408 ----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 446 (558)
+.++++.+.+++++..+|.+..+|..+...+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999888555
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.84 E-value=9.7e-05 Score=71.16 Aligned_cols=113 Identities=6% Similarity=-0.093 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 036003 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS-TPILWRTLLSSC 404 (558)
Q Consensus 326 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~ 404 (558)
...+..+...+.+.|++++|...|++..+.. +.. ......+++. ...| +...|..+..+|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 4556677777788888888888888776520 000 0001111111 1122 457888899999
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 405 SSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
.+.|++++|+..++++++.+|.++.+|..++.+|...|++++|.+.|++..+.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998774
No 196
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.81 E-value=0.00021 Score=71.15 Aligned_cols=95 Identities=7% Similarity=-0.031 Sum_probs=75.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 364 HYGCMVDLLGRAGRLDEAYRFIDEL----PIKS-------------TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~~-------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
.+..+...|.+.|++++|...|++. +..+ ....|..+..+|.+.|++++|+..++++++++|.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 4444555555555555555555554 1111 1578888999999999999999999999999999
Q ss_pred CcccHHhHHHHHHhcCChHHHHHHHHHHHhCC
Q 036003 427 HGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 427 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
+..+|..++.+|...|++++|...|++..+..
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999998753
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.81 E-value=7.8e-05 Score=54.98 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHH
Q 036003 362 IKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439 (558)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 439 (558)
...+..+...+...|++++|...|++. .. +.+...+..+..++...|++++|...++++++.+|.++.++..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456666777777888888888887776 22 2356777888888888888888888888888888888888887777776
Q ss_pred hcC
Q 036003 440 RAG 442 (558)
Q Consensus 440 ~~g 442 (558)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 544
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.76 E-value=0.00011 Score=57.16 Aligned_cols=78 Identities=10% Similarity=0.069 Sum_probs=63.8
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 380 EAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 380 ~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
+|++.|++. ...| +...+..+...+...|++++|...|+++++.+|.+...|..++.+|...|++++|...|++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355555554 3333 56788888889999999999999999999999988888999999999999999999999888653
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.62 E-value=0.00054 Score=55.36 Aligned_cols=111 Identities=9% Similarity=-0.025 Sum_probs=59.6
Q ss_pred ChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 036003 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS----HNNLGLAKQV 416 (558)
Q Consensus 341 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~ 416 (558)
++++|.+.|++..+. + .+. .. |...|...+.+++|.++|++.-...++..+..|...|.. .+++++|.+.
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 345555555555442 2 111 11 444555555555555555554223455555555555555 5566666666
Q ss_pred HHHHHccCCCCcccHHhHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 036003 417 IERIFELDDSHGGDYVILSNLCAR----AGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 459 (558)
|+++.+.+ ++.++..|..+|.. .+++++|.+.|++..+.|.
T Consensus 84 ~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 66665553 33455666666665 5666666666666665554
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.56 E-value=5.2e-05 Score=61.91 Aligned_cols=85 Identities=7% Similarity=-0.039 Sum_probs=66.1
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHccCCCCcccHHhHHHHHHhc
Q 036003 374 RAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNN----------LGLAKQVIERIFELDDSHGGDYVILSNLCARA 441 (558)
Q Consensus 374 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 441 (558)
+.+.+++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|.+..+|..++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445566666666665 2233 55666666666666655 56999999999999999999999999999987
Q ss_pred C-----------ChHHHHHHHHHHHhCC
Q 036003 442 G-----------RWEDVDYLRKLMKDRG 458 (558)
Q Consensus 442 g-----------~~~~A~~~~~~m~~~g 458 (558)
| ++++|.+.|++..+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999998743
No 201
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.54 E-value=0.00043 Score=67.80 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=86.7
Q ss_pred HHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHc-----cCCCCc---cc
Q 036003 369 VDLLGRAGRLDEAYRFIDEL---------PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFE-----LDDSHG---GD 430 (558)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~---~~ 430 (558)
+..+.+.|++++|+.++++. +..|+ ..+++.+..+|...|++++|+.+++++++ .+|.++ .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44455778888888888765 11122 35788899999999999999999999875 345554 46
Q ss_pred HHhHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHH
Q 036003 431 YVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502 (558)
Q Consensus 431 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 502 (558)
++.|+..|...|++++|..++++..+.-.. .-...||...++...+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999988652110 112378888888888888877775
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.54 E-value=0.00036 Score=69.42 Aligned_cols=123 Identities=12% Similarity=-0.045 Sum_probs=82.5
Q ss_pred HHHHCCChHHHHHHHHHHHHC---CC---CCC-HHHHHHHHHHHHccCChHHHHHHHHHchhhc----CC-CC-ChhHHH
Q 036003 300 AYATHGQGHKSILMFEEMMKA---QV---SPD-EITFLGLLYACSHTGLVDEGWNYFYSMRDKY----GI-VP-GIKHYG 366 (558)
Q Consensus 300 ~~~~~~~~~~a~~~~~~m~~~---g~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~-~~-~~~~~~ 366 (558)
.+...|++++|+.++++..+. -+ .|+ ..+++.|...|...|++++|..++++..+.+ |- .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345667777777777766542 11 222 2567777788888888888887777765421 11 12 245677
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 036003 367 CMVDLLGRAGRLDEAYRFIDEL---------PIKSTP-ILWRTLLSSCSSHNNLGLAKQVIERIFE 422 (558)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~~---------~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 422 (558)
.|...|...|++++|+.++++. +..|+. .+...+..++...+.+++|+.+++++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887765 223333 3455666777788899999999988865
No 203
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.53 E-value=0.0004 Score=51.50 Aligned_cols=70 Identities=10% Similarity=0.032 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036003 391 KSTPILWRTLLSSCSSHNN---LGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460 (558)
Q Consensus 391 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 460 (558)
.+++..+..+..++...++ .++|..+++++++.+|.++.+...++..+.+.|++++|...|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3567778888888765554 799999999999999999999999999999999999999999999886543
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.00029 Score=54.10 Aligned_cols=66 Identities=6% Similarity=-0.095 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCC
Q 036003 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
+...|..+...+...|++++|.+.|+++++..|.++..+..++.+|.+.|++++|.+.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788899999999999999999999999999999999999999999999999999999998743
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.45 E-value=0.0018 Score=52.18 Aligned_cols=112 Identities=11% Similarity=-0.028 Sum_probs=91.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh----cCCHHH
Q 036003 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR----AGRLDE 380 (558)
Q Consensus 305 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 380 (558)
+++++|+.+|++..+.| .|+.. |...|...+.+++|.+.|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999999887 34444 666667777888899999998874 366788888888887 889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHccCC
Q 036003 381 AYRFIDELPIKSTPILWRTLLSSCSS----HNNLGLAKQVIERIFELDD 425 (558)
Q Consensus 381 A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 425 (558)
|.++|++.-...++..+..|...|.. .++.++|.+.|+++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988434678888889999988 8999999999999988764
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.43 E-value=0.00027 Score=54.89 Aligned_cols=81 Identities=11% Similarity=0.044 Sum_probs=55.7
Q ss_pred HHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036003 344 EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIF 421 (558)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (558)
.|...|++..+ ..+.+...+..+...|...|++++|...|++. ... .+...|..+..++...|++++|...|++++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666554 22335667777777777777888777777775 222 346677778888888888888888888888
Q ss_pred ccCCC
Q 036003 422 ELDDS 426 (558)
Q Consensus 422 ~~~~~ 426 (558)
+..|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 77654
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.34 E-value=0.0005 Score=67.21 Aligned_cols=83 Identities=8% Similarity=-0.071 Sum_probs=65.3
Q ss_pred hcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHc-----cCCCCc---ccHHhHH
Q 036003 374 RAGRLDEAYRFIDEL---------PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFE-----LDDSHG---GDYVILS 435 (558)
Q Consensus 374 ~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~---~~~~~l~ 435 (558)
..|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ .+|.++ .+|+.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346777777777654 22333 36788999999999999999999999876 355555 4688999
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 036003 436 NLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 436 ~~~~~~g~~~~A~~~~~~m~~ 456 (558)
..|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998865
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.32 E-value=0.00063 Score=49.88 Aligned_cols=65 Identities=14% Similarity=0.216 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
+...+..+...+...|++++|...++++++..|.++..+..++.+|.+.|++++|.+.+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678888899999999999999999999999999999999999999999999999999998764
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.30 E-value=0.00014 Score=59.28 Aligned_cols=88 Identities=13% Similarity=0.031 Sum_probs=57.6
Q ss_pred cCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCC----------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 036003 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR----------LDEAYRFIDEL-PIKS-TPILWRTLLSSCSS 406 (558)
Q Consensus 339 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 406 (558)
.+.+++|.+.++...+. -+.+...|..+..++.+.++ +++|+..|++. .+.| +...|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 34455555555555542 22345555555555555544 34777777765 3344 45677777777776
Q ss_pred c-----------CCHHHHHHHHHHHHccCCCCc
Q 036003 407 H-----------NNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 407 ~-----------g~~~~a~~~~~~~~~~~~~~~ 428 (558)
. |++++|++.|+++++++|.+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 5 489999999999999999874
No 210
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.27 E-value=0.0018 Score=52.22 Aligned_cols=66 Identities=6% Similarity=-0.058 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHccC-C-CCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 391 KSTPILWRTLLSSCSSHN---NLGLAKQVIERIFELD-D-SHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 391 ~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
.++..+...+..++++.+ +.++++.+|++.++.+ | .+...+..|..+|.+.|++++|.+.++.+.+
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 356777777777888777 5668888888888877 5 3466777888888888888888888888876
No 211
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.26 E-value=0.0052 Score=62.61 Aligned_cols=149 Identities=9% Similarity=-0.026 Sum_probs=118.6
Q ss_pred CCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCC----------hHHHHHHHHHchhhcCCCCChhHHHHHHHHH
Q 036003 304 HGQGHKSILMFEEMMKAQVSPD-EITFLGLLYACSHTGL----------VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372 (558)
Q Consensus 304 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 372 (558)
....++|++.++++... .|+ ...|+.--.++...|+ ++++.+.++.+.+. -+-+..+|..-...+
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 34457889999999984 554 4556655555666666 89999999999873 345677888777888
Q ss_pred hhcC--CHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHccCCCCcccHHhHHHHHHhc------
Q 036003 373 GRAG--RLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHN-NLGLAKQVIERIFELDDSHGGDYVILSNLCARA------ 441 (558)
Q Consensus 373 ~~~g--~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 441 (558)
.+.| +++++++.++++ .. ..+...|+.-...+...| .++++++.++++++.+|.+..+|.....++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8888 779999999998 22 347888988888888888 899999999999999999999999988888774
Q ss_pred --------CChHHHHHHHHHHHh
Q 036003 442 --------GRWEDVDYLRKLMKD 456 (558)
Q Consensus 442 --------g~~~~A~~~~~~m~~ 456 (558)
+.++++.+.+++...
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHh
Confidence 457888888877765
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.11 E-value=0.0009 Score=65.41 Aligned_cols=93 Identities=9% Similarity=0.015 Sum_probs=68.7
Q ss_pred ccCChHHHHHHHHHchhhc--CCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHH
Q 036003 338 HTGLVDEGWNYFYSMRDKY--GIVPG----IKHYGCMVDLLGRAGRLDEAYRFIDEL---------PIKSTP-ILWRTLL 401 (558)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~~~~-~~~~~l~ 401 (558)
..|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3567888888877766532 12222 467888888888999999988888775 334443 6789999
Q ss_pred HHHHhcCCHHHHHHHHHHHHc-----cCCCCccc
Q 036003 402 SSCSSHNNLGLAKQVIERIFE-----LDDSHGGD 430 (558)
Q Consensus 402 ~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ 430 (558)
..|...|++++|+.+++++++ .||+++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999876 45666543
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.04 E-value=0.0028 Score=62.01 Aligned_cols=99 Identities=10% Similarity=-0.015 Sum_probs=72.8
Q ss_pred HHHHHccCChHHHHHHHHHchhhc--CCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCH-HH
Q 036003 333 LYACSHTGLVDEGWNYFYSMRDKY--GIVPG----IKHYGCMVDLLGRAGRLDEAYRFIDEL---------PIKSTP-IL 396 (558)
Q Consensus 333 l~~~~~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~~~~-~~ 396 (558)
+..+.+.|++++|..++++..+.. -+.|+ ..+++.|...|...|++++|+.++++. +..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556778888888888776531 12222 457788888888899999988888765 333443 67
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHc-----cCCCCcccH
Q 036003 397 WRTLLSSCSSHNNLGLAKQVIERIFE-----LDDSHGGDY 431 (558)
Q Consensus 397 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~ 431 (558)
++.|...|...|++++|+.+++++++ .||+++.+-
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 88999999999999999999999876 467776543
No 214
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.01 E-value=0.0015 Score=49.14 Aligned_cols=65 Identities=9% Similarity=-0.056 Sum_probs=49.7
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 425 (558)
+...+..+...|.+.|++++|++.|++. ...| +...|..+..+|...|++++|.+.+++++++.|
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 5667777888888888888888888876 2233 456788888888888888888888888887654
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.90 E-value=0.0017 Score=48.58 Aligned_cols=63 Identities=11% Similarity=0.108 Sum_probs=33.5
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccH
Q 036003 369 VDLLGRAGRLDEAYRFIDEL-PIKS-TPI-LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431 (558)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~~-~~~~-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 431 (558)
...+.+.|++++|.+.|++. ...| +.. .+..+..++...|++++|.+.|+++++.+|.+..++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34455555666665555554 2122 334 555555555555666666666666665555554443
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.89 E-value=0.0041 Score=46.38 Aligned_cols=86 Identities=10% Similarity=0.056 Sum_probs=49.8
Q ss_pred HHHHHHccCChHHHHHHHHHchhhcCCCCChh-HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 036003 332 LLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK-HYGCMVDLLGRAGRLDEAYRFIDEL-PIKST-PILWRTLLSSCSSHN 408 (558)
Q Consensus 332 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g 408 (558)
....+...|++++|...|+++.+. .+.+.. .+..+..+|...|++++|.+.|++. ...|+ ...+.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 344566677777777777777653 223445 6667777777777777777777765 22232 222211 4
Q ss_pred CHHHHHHHHHHHHccCCCC
Q 036003 409 NLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 409 ~~~~a~~~~~~~~~~~~~~ 427 (558)
.+.++...+++....+|.+
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 4555566665555555443
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.75 E-value=0.017 Score=54.19 Aligned_cols=136 Identities=12% Similarity=-0.017 Sum_probs=66.6
Q ss_pred CHHhHHHHHHHHH--HCC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHc---cC--ChHH---HHHHHHHchhh
Q 036003 290 DTQAWSAMIVAYA--THG---QGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSH---TG--LVDE---GWNYFYSMRDK 355 (558)
Q Consensus 290 ~~~~~~~li~~~~--~~~---~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~---~g--~~~~---a~~~~~~~~~~ 355 (558)
+..+|...+.+.. ..+ ...+|..+|++..+ ..|+. ..+..+.-++.- .+ .... ....++.....
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 5566666655433 222 24678888888887 45653 444443333320 00 0000 01111111100
Q ss_pred cCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 036003 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 356 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 427 (558)
...+.+..+|.++...+...|++++|...++++ ...|+...|..+...+.-.|++++|.+.+++++.++|..
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 022334555555555555556666666666655 233555555555555556666666666666666665543
No 218
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.65 E-value=0.00014 Score=69.62 Aligned_cols=239 Identities=12% Similarity=0.061 Sum_probs=167.9
Q ss_pred CChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHH
Q 036003 51 NDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130 (558)
Q Consensus 51 ~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 130 (558)
..+.+|..|..+..+. +.+.+|+.-|-+. .|+..|..+|....+.|.+++-+..+.-.++. .+ ++..=+.|+-
T Consensus 52 n~p~VWs~LgkAqL~~---~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~k-e~~IDteLi~ 124 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQK---GMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-AR-ESYVETELIF 124 (624)
T ss_dssp CCCCCSSSHHHHTTTS---SSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CC-STTTTHHHHH
T ss_pred CCccHHHHHHHHHHcc---CchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hc-ccccHHHHHH
Confidence 3456888899999988 8888887766443 57778899999999999999988888655544 22 5556678999
Q ss_pred HHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC-----------------------
Q 036003 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE----------------------- 187 (558)
Q Consensus 131 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----------------------- 187 (558)
+|++. +++.+-++++ -.||..-...+.+-|...|.++.|.-+|..+..
T Consensus 125 ayAk~--~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 125 ALAKT--NRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp HHHTS--CSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred HHHhh--CcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998 7766554443 246666667788888899999998888876641
Q ss_pred -CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 036003 188 -PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266 (558)
Q Consensus 188 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 266 (558)
.++.||-.+-.+|...+.+.-|.-.--.+. +.|| ....++..|...|.+++-..+++.-... -......|+-|
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTEL 269 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTEL 269 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHH
Confidence 577889999999999988887754433332 1222 2234555677778888877777765532 13456677777
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC-----------CHHhHHHHHHHHHHCCChHHHHH
Q 036003 267 IDMHAKCGRLDDAVSVFDNMSGK-----------DTQAWSAMIVAYATHGQGHKSIL 312 (558)
Q Consensus 267 ~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~ 312 (558)
.-.|++- +.++..+.++....+ ....|..++-.|.+-.++|.|..
T Consensus 270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 7777764 556666665554432 44568888888888888876654
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.64 E-value=0.16 Score=54.35 Aligned_cols=153 Identities=12% Similarity=0.054 Sum_probs=87.3
Q ss_pred HHhcCCCchHHHH-HHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 036003 96 GYSRSKTPIRAIF-LFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174 (558)
Q Consensus 96 ~~~~~g~~~~A~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 174 (558)
.....+++++|.+ ++..+ |+......++..+.+. |..+.|.++.+.- . .-.......|+
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~--~~~~~a~~~~~~~-------~-----~~f~~~l~~~~ 667 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQ--EYYEEALNISPDQ-------D-----QKFELALKVGQ 667 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHT--TCHHHHHHHCCCH-------H-----HHHHHHHHHTC
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhC--CChHHheecCCCc-------c-----hheehhhhcCC
Confidence 3345667777665 43111 1012225555555555 7777776655311 1 11234456788
Q ss_pred hHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 036003 175 VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254 (558)
Q Consensus 175 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 254 (558)
++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++.+.....
T Consensus 668 ~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 668 LTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 888888877664 556788888888888888888888877643 334444455566666655555444443
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 036003 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285 (558)
Q Consensus 255 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 285 (558)
|. ++.-..+|.+.|++++|.++|.+
T Consensus 737 ~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 737 GK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp TC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred Cc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 31 12233445556676666665443
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.62 E-value=0.044 Score=58.76 Aligned_cols=153 Identities=12% Similarity=0.054 Sum_probs=85.3
Q ss_pred HHHCCCccHHHH-HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 036003 200 YARSSRPNEALS-LFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278 (558)
Q Consensus 200 ~~~~g~~~~A~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 278 (558)
....+++++|.+ ++..+ |+......++..+.+.|..+.|.++.+.-. .-.......|++++
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHH
Confidence 345566666655 33111 112223555666666677777665442111 11234556788888
Q ss_pred HHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCC
Q 036003 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGI 358 (558)
Q Consensus 279 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (558)
|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++-+..... |
T Consensus 671 A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~- 737 (814)
T 3mkq_A 671 ARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G- 737 (814)
T ss_dssp HHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T-
T ss_pred HHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C-
Confidence 888876663 456788888888888888888888887643 334444444456655544444333321 1
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 359 VPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 359 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
-++.-..+|.+.|++++|.+++.++
T Consensus 738 -----~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 -----KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp -----CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred -----chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1233334455566666666655554
No 221
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.60 E-value=0.17 Score=39.20 Aligned_cols=140 Identities=9% Similarity=0.016 Sum_probs=95.8
Q ss_pred HHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 036003 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381 (558)
Q Consensus 302 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 381 (558)
.-.|..++..++..+.... .+..-|+.+|--....-+-+-..++++.+-+-+.+. .+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHH
Confidence 3457777777777777653 255666666666666666666667777665432222 34444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036003 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460 (558)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 460 (558)
...+-.+. .+.......++.....|+-+.-.+++..++...++++....-+..+|.+.|+..+|.+++.+.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 44444443 244455666777888888888888888877777777888888899999999999999999988888875
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.38 E-value=0.029 Score=41.25 Aligned_cols=78 Identities=9% Similarity=0.033 Sum_probs=57.6
Q ss_pred CCChhHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHh
Q 036003 359 VPGIKHYGCMVDLLGRAGR---LDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI 433 (558)
Q Consensus 359 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 433 (558)
+.+...+..+..++...++ .++|..++++. ...| ++.....+...+...|++++|+..|+++++.+|+ ......
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHH
Confidence 4566777777777765444 68898888887 3334 5677888888899999999999999999999988 334444
Q ss_pred HHHH
Q 036003 434 LSNL 437 (558)
Q Consensus 434 l~~~ 437 (558)
+...
T Consensus 82 i~~~ 85 (93)
T 3bee_A 82 IIES 85 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.28 E-value=0.013 Score=52.57 Aligned_cols=86 Identities=10% Similarity=0.129 Sum_probs=69.5
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHccCCCC-cccHHhHHHHHHhc-CChHH
Q 036003 378 LDEAYRFIDEL-PIKST---PILWRTLLSSCSS-----HNNLGLAKQVIERIFELDDSH-GGDYVILSNLCARA-GRWED 446 (558)
Q Consensus 378 ~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~ 446 (558)
...|...+++. ...|+ ...|..+...|.. .|+.++|.+.|+++++++|.. ..++..+++.+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 35666666665 44565 5678888888888 499999999999999999975 89999999999885 99999
Q ss_pred HHHHHHHHHhCCCccCC
Q 036003 447 VDYLRKLMKDRGVLKVP 463 (558)
Q Consensus 447 A~~~~~~m~~~g~~~~~ 463 (558)
|.+.+++........+|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 99999999887666334
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.23 E-value=0.02 Score=43.17 Aligned_cols=73 Identities=10% Similarity=0.024 Sum_probs=53.2
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccH
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-----P----IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 431 (558)
+..-+-.|...+.+.|++..|...|+.. + ..+...++..+..++.+.|+++.|...++++++..|.+..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3444556667777777777777777664 1 123457788899999999999999999999999999886554
Q ss_pred Hh
Q 036003 432 VI 433 (558)
Q Consensus 432 ~~ 433 (558)
..
T Consensus 84 ~n 85 (104)
T 2v5f_A 84 GN 85 (104)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 225
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.15 E-value=1.4 Score=44.94 Aligned_cols=114 Identities=11% Similarity=0.064 Sum_probs=69.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 036003 305 GQGHKSILMFEEMMKAQVSPDEIT----FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380 (558)
Q Consensus 305 ~~~~~a~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 380 (558)
.+.+.|..+|....+.+ ..+... ...+.......+...++...+...... ..+.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 37788988888876543 223322 222232333445345566666654432 2333334445555567799999
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 036003 381 AYRFIDELPIKS--TPILWRTLLSSCSSHNNLGLAKQVIERIFE 422 (558)
Q Consensus 381 A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 422 (558)
|...|+.|+..+ ...-..=+..++...|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999985332 233233355677788999999999999875
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.13 E-value=0.038 Score=42.76 Aligned_cols=65 Identities=6% Similarity=-0.115 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHccC-C-CCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 392 STPILWRTLLSSCSSHNNLGL---AKQVIERIFELD-D-SHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
++..+--.+..++.+..+... ++.+++.....+ | ........|+.++.+.|+|++|.+.++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444444443333 555555554443 2 1223444455555555555555555555544
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.96 E-value=0.023 Score=45.78 Aligned_cols=85 Identities=12% Similarity=0.011 Sum_probs=62.6
Q ss_pred hHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHH
Q 036003 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG---RLDEAYRFIDEL-PIK-S--TPILWRTLLSSCSSHNNLGLAK 414 (558)
Q Consensus 342 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-~--~~~~~~~l~~~~~~~g~~~~a~ 414 (558)
...+.+.|.+.... + .++..+...+..++++.+ ++++++.+|++. ... | +...+..|.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 44555566655542 3 367777777888888877 566888888776 222 4 3456777888899999999999
Q ss_pred HHHHHHHccCCCCc
Q 036003 415 QVIERIFELDDSHG 428 (558)
Q Consensus 415 ~~~~~~~~~~~~~~ 428 (558)
+.++.+++.+|.+.
T Consensus 92 ~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 92 KYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHCTTCH
T ss_pred HHHHHHHhcCCCCH
Confidence 99999999999764
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.27 Score=40.59 Aligned_cols=129 Identities=16% Similarity=0.200 Sum_probs=76.8
Q ss_pred HHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 036003 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN 347 (558)
Q Consensus 268 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 347 (558)
......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... |..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3455677777777776665 3566788888888888888888877777543 3344445555666665554
Q ss_pred HHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036003 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420 (558)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 420 (558)
+-+....+ | -++.-...+.-.|+++++.++|.+.+.-|... -.....|-.+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 43333322 1 24445555666788888888877765222111 1112355666666666554
No 229
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.79 E-value=0.14 Score=47.98 Aligned_cols=133 Identities=5% Similarity=-0.065 Sum_probs=60.4
Q ss_pred CCCcccHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh----CCC-------hHHHHHHHhc
Q 036003 119 LPDDYSFPSLLKACACV---GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE----CSD-------VEAARRIFEN 184 (558)
Q Consensus 119 ~p~~~~~~~ll~~~~~~---~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~-------~~~A~~~~~~ 184 (558)
+.+...|...+++.... ...+..+|..+|+++++.. +-....+..+..+|.- .+. +..+.+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 34556666666554322 1144567777777777753 2233444433333320 000 0011111111
Q ss_pred cC--CCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 036003 185 IS--EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254 (558)
Q Consensus 185 ~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 254 (558)
+. ..+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|...+++....
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 11 1333444444444444455555555555555543 44444444445555555555555555555544
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.69 Score=38.17 Aligned_cols=102 Identities=10% Similarity=0.093 Sum_probs=58.8
Q ss_pred HHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 036003 167 NLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW 246 (558)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 246 (558)
.....+|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|.-.|+.++-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445677777777776665 3556677777777777777777777766542 2334444445566655554
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 036003 247 IHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285 (558)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 285 (558)
+-+.....| . ++.-...+.-.|+++++.++|.+
T Consensus 82 la~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444333 1 12333344455666666665544
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.33 E-value=0.056 Score=40.67 Aligned_cols=65 Identities=12% Similarity=-0.050 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC-------CCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELD-------DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
+..-+..|...+...|+++.|...|+++++.. +.....+..|+.+|.+.|++++|..++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556678899999999999999999998753 334567899999999999999999999998763
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.23 E-value=0.61 Score=36.71 Aligned_cols=66 Identities=11% Similarity=0.081 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHccCCC-CcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 391 KSTPILWRTLLSSCSSHNN---LGLAKQVIERIFELDDS-HGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 391 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
.|+..+--.+..++.+..+ ..+++.+++.....+|. .......|..++.+.|++++|.++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4566565556666666654 45677777777776653 334566677788888888888888887776
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.16 E-value=0.84 Score=35.44 Aligned_cols=84 Identities=8% Similarity=0.016 Sum_probs=54.5
Q ss_pred CCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 036003 172 CSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251 (558)
Q Consensus 172 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 251 (558)
+|++......+-.+. .+....+.-+..+..+|+-++-.+++..+... .+|++.....+..+|.+.|+..++..++.++
T Consensus 74 C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 334444443333332 23334455667777788888888888775442 4677788888888888888888888888888
Q ss_pred HHhCCC
Q 036003 252 KKYGLD 257 (558)
Q Consensus 252 ~~~~~~ 257 (558)
.+.|++
T Consensus 152 C~kG~k 157 (172)
T 1wy6_A 152 CKKGEK 157 (172)
T ss_dssp HHTTCH
T ss_pred HHhhhH
Confidence 777743
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.62 E-value=2 Score=38.61 Aligned_cols=114 Identities=13% Similarity=0.066 Sum_probs=56.4
Q ss_pred hcCCHHHHHHHHhccCCCCHH--hHHHHHHH-HHHC--CC------hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 036003 272 KCGRLDDAVSVFDNMSGKDTQ--AWSAMIVA-YATH--GQ------GHKSILMFEEMMKAQVSPD---EITFLGLLYACS 337 (558)
Q Consensus 272 ~~g~~~~A~~~~~~~~~~~~~--~~~~li~~-~~~~--~~------~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~ 337 (558)
+.|+..+-.+.+.+....++. .|..++.+ +... |+ ...|...+++..+ +.|+ ...|..+...|.
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHH
Confidence 334444555555555544433 35444432 2222 22 3455555555555 4454 245555555555
Q ss_pred cc-----CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhc-CCHHHHHHHHHhC
Q 036003 338 HT-----GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA-GRLDEAYRFIDEL 388 (558)
Q Consensus 338 ~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~ 388 (558)
.. |+.++|.+.|++..+- +-.-+..++....+.+++. |+.++|.+.+++.
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL~L-nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLTRY-CSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHHHH-CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred hCCCccCCCHHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 52 6666666666666542 1111244555555555553 5555555555554
No 235
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.28 E-value=3.1 Score=38.01 Aligned_cols=170 Identities=9% Similarity=0.012 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHH----HHHHHHCCCCCCHHHHHHHHHHH
Q 036003 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL----FRELQERNLKPTDVTMLSALSSC 235 (558)
Q Consensus 160 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~~~~~ll~~~ 235 (558)
..|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ ++...+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3556677778899999999998755 34556777887766554 55566778899988888888777
Q ss_pred hccCChH-HHHHHHHHHH----HhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHC---C
Q 036003 236 ALLGSLD-LGKWIHEYIK----KYGL--DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH---G 305 (558)
Q Consensus 236 ~~~~~~~-~a~~~~~~~~----~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---~ 305 (558)
.....-+ .-.++.+++. +.|- .-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 6543211 1233333443 3322 235677788889999999999998877633323455554444433333 3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhh
Q 036003 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355 (558)
Q Consensus 306 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 355 (558)
...++ +...-..++ .|...|+...|..+|....++
T Consensus 183 ~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 32221 112222222 344568888888888877653
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.26 E-value=0.34 Score=37.43 Aligned_cols=89 Identities=12% Similarity=-0.020 Sum_probs=62.7
Q ss_pred CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHH
Q 036003 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE---AYRFIDEL-PIK-S--TPILWRTLLSSCSSHNNLGL 412 (558)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-~--~~~~~~~l~~~~~~~g~~~~ 412 (558)
..+..+.+.|.+.... +. ++..+--.+..++.+..+..+ ++.+++++ ... | .......|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3344555556555543 33 667777777888888777666 77888876 322 3 22455667788999999999
Q ss_pred HHHHHHHHHccCCCCccc
Q 036003 413 AKQVIERIFELDDSHGGD 430 (558)
Q Consensus 413 a~~~~~~~~~~~~~~~~~ 430 (558)
|.+.++.+++..|.+..+
T Consensus 93 A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhCCCCHHH
Confidence 999999999999987543
No 237
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.81 E-value=0.0048 Score=59.25 Aligned_cols=211 Identities=14% Similarity=0.059 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 036003 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL 238 (558)
Q Consensus 159 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 238 (558)
+.+|..|..++.+.+++.+|++-|=+ ..|...|..+|....+.|.+++-+..+...++..-.| ..=+.|+-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHhh
Confidence 34555566666666666655544422 2455556666666666666666666665444432222 2224556666666
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC------------------------CCCHHhH
Q 036003 239 GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS------------------------GKDTQAW 294 (558)
Q Consensus 239 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~~ 294 (558)
+++.+-++++. .||..-...+.+-+...|.++.|.-+|..+. ..++.+|
T Consensus 130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 66544333221 3444444455566666666666666555542 1155677
Q ss_pred HHHHHHHHHCCCh------------------------------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH
Q 036003 295 SAMIVAYATHGQG------------------------------HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDE 344 (558)
Q Consensus 295 ~~li~~~~~~~~~------------------------------~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 344 (558)
-.+-.+|...+.+ ++-+.+++.-... -+.-.-.|+-|.-.|++- ++++
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeK 280 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQK 280 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTH
T ss_pred HHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHH
Confidence 7777777665544 4444444433311 122334555555555544 3444
Q ss_pred HHHHHHHchhhcCCCC------ChhHHHHHHHHHhhcCCHHHHH
Q 036003 345 GWNYFYSMRDKYGIVP------GIKHYGCMVDLLGRAGRLDEAY 382 (558)
Q Consensus 345 a~~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~ 382 (558)
..+.++....+-+++. ....|.-++-.|.+-..++.|.
T Consensus 281 lmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 281 MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 4454444443222221 2345566666666666666553
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.73 E-value=0.42 Score=49.64 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=49.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 402 SSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 402 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
..|...|+++.|+++.+++...-|.+..+|..|+.+|...|+|+.|+-.+..+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 446678999999999999999999999999999999999999999999998774
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.92 E-value=0.52 Score=36.55 Aligned_cols=65 Identities=11% Similarity=0.081 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHccCCC-CcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 392 STPILWRTLLSSCSSHNN---LGLAKQVIERIFELDDS-HGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
|+..+--.+..++.+..+ ..+++.+++...+.+|. ....+..|+.++.+.|++++|.++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444445555555543 34566666666665552 234555666677777777777777776655
No 240
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.43 E-value=11 Score=40.29 Aligned_cols=91 Identities=12% Similarity=0.039 Sum_probs=50.3
Q ss_pred hHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCC--------------cccHHHHHHHH----hcCCCch----HHHHHHH
Q 036003 54 NVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPD--------------IVLFNTMARGY----SRSKTPI----RAIFLFV 111 (558)
Q Consensus 54 ~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~li~~~----~~~g~~~----~A~~~~~ 111 (558)
.....++..|.++ +...+|..+.-+..+-| ...|..++..+ ...-..+ +.+++.-
T Consensus 146 ~Lv~~iv~~cl~h---nae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~ 222 (963)
T 4ady_A 146 SIFERMIEKCLKA---SELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSF 222 (963)
T ss_dssp HHHHHHHHHHHHH---TCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Confidence 3556677777777 78888777776665411 13343333322 1112221 3333322
Q ss_pred HhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q 036003 112 ELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152 (558)
Q Consensus 112 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 152 (558)
++... . +..-|..++.+..+. ++.+.+.++|..+.+
T Consensus 223 ~Iy~k-~--~~~dy~~a~~~ai~L--nD~~li~~if~~l~~ 258 (963)
T 4ady_A 223 DFLMN-M--PNCDYLTLNKVVVNL--NDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHH-S--SSCCHHHHHHHHHHH--TCHHHHHHHHHHHHT
T ss_pred HHHHh-C--CchhHHHHHHHHHHc--CCHHHHHHHHHHHHh
Confidence 22211 1 122466777777778 889999999988763
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.40 E-value=0.24 Score=47.58 Aligned_cols=70 Identities=11% Similarity=-0.048 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHH-----hCCCccCCccc
Q 036003 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK-----DRGVLKVPGCS 466 (558)
Q Consensus 397 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~~~~~~~ 466 (558)
...++.++...|+++++...++.++..+|-+...|..++.+|.+.|+..+|.+.|++.. +.|+.|.+.+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34566778888999999999999999999998899999999999999999999988764 46888877543
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.87 E-value=0.84 Score=36.28 Aligned_cols=54 Identities=9% Similarity=0.016 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 036003 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLK 461 (558)
Q Consensus 408 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 461 (558)
++.++|.++|+.+++....=+..|...+..-.++|+...|.+++.+....+.+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 677777777777766533323445555555667777777777777777666554
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.80 E-value=6.1 Score=38.49 Aligned_cols=184 Identities=11% Similarity=0.035 Sum_probs=116.1
Q ss_pred CCccHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH----HHHhcC
Q 036003 204 SRPNEALSLFRELQER-----NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALID----MHAKCG 274 (558)
Q Consensus 204 g~~~~A~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g 274 (558)
|+++.|++.+..+.+. +..........++..|...++++.....+..+.+..-..... ...++. ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a-i~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS-IQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH-HHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHhcCC
Confidence 6788898888766542 344556778889999999999999888777665432222211 222332 222233
Q ss_pred CH--HHHHHHHhccCCC----------CHHhHHHHHHHHHHCCChHHHHHHHHHHHH--CCCCCC---HHHHHHHHHHHH
Q 036003 275 RL--DDAVSVFDNMSGK----------DTQAWSAMIVAYATHGQGHKSILMFEEMMK--AQVSPD---EITFLGLLYACS 337 (558)
Q Consensus 275 ~~--~~A~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~---~~~~~~ll~~~~ 337 (558)
.. +.-..+.+.+... .......|...|...|++.+|..++.++.. .|.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 22 2233333333321 112345677888899999999999998864 232222 145666777888
Q ss_pred ccCChHHHHHHHHHchhhc-CCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 338 HTGLVDEGWNYFYSMRDKY-GIVPG----IKHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~-~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
..+++.+|..++.++.... ...++ ...+...+..+...+++.+|.+.|.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8999999999988875321 12222 245667777888888888888876665
No 244
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.93 E-value=1.2 Score=35.44 Aligned_cols=60 Identities=15% Similarity=0.091 Sum_probs=40.9
Q ss_pred cCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhH
Q 036003 375 AGRLDEAYRFIDEL-P-IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434 (558)
Q Consensus 375 ~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 434 (558)
.++.++|.++|+.+ . .+.-...|-....--.++|+.+.|.+++.+++.+.|.....+...
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 36667777777665 1 111266777777777888999999999999998887654444433
No 245
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=90.88 E-value=5.6 Score=33.41 Aligned_cols=104 Identities=15% Similarity=0.241 Sum_probs=74.5
Q ss_pred HHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHcc--CCCCcccHHhHHHHHHhcCChHHHHHHHHH
Q 036003 380 EAYRFIDEL-PIKSTPI---LWRTLLSSCSSHNNLGLAKQVIERIFEL--DDSHGGDYVILSNLCARAGRWEDVDYLRKL 453 (558)
Q Consensus 380 ~A~~~~~~~-~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 453 (558)
++.+.|... ..+.|+. .|-.++..+ ..++..++..+|..|... |...+..|...+..+...|++++|.++|+.
T Consensus 62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 62 RCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444 3345654 343333333 245577999999998765 466677899999999999999999999999
Q ss_pred HHhCCCccCCcccEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCcccC
Q 036003 454 MKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPD 509 (558)
Q Consensus 454 m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd 509 (558)
-.+.+-.| .+...+...++..+|.+.+++-|
T Consensus 141 GI~~~A~P-------------------------~~rL~~~~~~F~~R~~~~~~~~~ 171 (202)
T 3esl_A 141 GAENNCRP-------------------------YNRLLRSLSNYEDRLREMNIVEN 171 (202)
T ss_dssp HHHTTCBS-------------------------HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHcCCcc-------------------------HHHHHHHHHHHHHHHHhcCCCCC
Confidence 99888877 24566677788889988888444
No 246
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.03 E-value=8.7 Score=40.92 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=7.5
Q ss_pred CCHHHHHHHHccC
Q 036003 70 SSMEHAHLLFDRI 82 (558)
Q Consensus 70 ~~~~~A~~~~~~~ 82 (558)
++.+.+.++|...
T Consensus 244 nD~~li~~if~~l 256 (963)
T 4ady_A 244 NDAGLALQLFKKL 256 (963)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5556666666553
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.82 E-value=4.3 Score=45.11 Aligned_cols=123 Identities=6% Similarity=-0.117 Sum_probs=83.6
Q ss_pred HHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCC-----------------
Q 036003 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL--PIK----------------- 391 (558)
Q Consensus 331 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~----------------- 391 (558)
.++..+...+..+.+.++..-.. .+....-.+..+|...|++++|.+.|++. +..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 45556666677766665443332 23333345667788888888888888876 110
Q ss_pred ------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcc-----cHHhHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036003 392 ------STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG-----DYVILSNLCARAGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 392 ------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (558)
.-..-|.-++..+.+.+.++.+.++.+.+++..+.+.. .|..+...+...|++++|...+-.+.+...
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 01234566777888899999999999988876533222 577788889999999999998887765444
No 248
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.80 E-value=14 Score=33.94 Aligned_cols=167 Identities=13% Similarity=0.062 Sum_probs=99.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHH----HHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036003 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL----MFEEMMKAQVSPDEITFLGLLYACSHT 339 (558)
Q Consensus 264 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~ll~~~~~~ 339 (558)
.++..=|.+.+++++|++++.. -...+.+.|+..-|-+ +++-..+.++++|......|+..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 4455667888888888887443 2344556666554444 345556677888888777777776654
Q ss_pred CChH-HHHHHHHHchh---hcC--CCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036003 340 GLVD-EGWNYFYSMRD---KYG--IVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413 (558)
Q Consensus 340 g~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 413 (558)
..-+ .=..+.+++.+ +.| -.-|......+...|.+.+++.+|...|- .+..+.+..+..++.-+...+...++
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCccH
Confidence 4311 11222222221 112 23467788889999999999999999884 34344446665555555444332222
Q ss_pred HHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
--++ ...+--|.-.++...|..+++...+
T Consensus 187 dlfi--------------aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 187 PLYC--------------ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHH--------------HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHH--------------HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2211 1223346677899999887776654
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.84 E-value=24 Score=39.16 Aligned_cols=79 Identities=10% Similarity=0.004 Sum_probs=36.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHchhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHH
Q 036003 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG----IKHYGCMVDLLGRAGRLDEAYRFIDELPI-KSTPILWRTLLSS 403 (558)
Q Consensus 329 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~ 403 (558)
|..++..+.+.+.++.+.++-+...+. ....+ ...|..+.+.+...|++++|...+-.++. .--....+.|+..
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~-~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~ 980 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADAS-KETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQ 980 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHH-CCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-ccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 455555555555555555554444432 11111 12355555566666666666555554421 1122344444444
Q ss_pred HHhcC
Q 036003 404 CSSHN 408 (558)
Q Consensus 404 ~~~~g 408 (558)
++..|
T Consensus 981 lce~~ 985 (1139)
T 4fhn_B 981 LTKQG 985 (1139)
T ss_dssp HHHHC
T ss_pred HHhCC
Confidence 44433
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.55 E-value=3.7 Score=29.95 Aligned_cols=62 Identities=19% Similarity=0.182 Sum_probs=46.6
Q ss_pred ccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 036003 206 PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALID 268 (558)
Q Consensus 206 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 268 (558)
.-+..+-++.+....+.|++......+.+|.+.+++..|.++++-++... .....+|..++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 33566677777777888999999999999999999999999998887653 222455665553
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.36 E-value=2 Score=34.79 Aligned_cols=26 Identities=8% Similarity=-0.163 Sum_probs=21.8
Q ss_pred cHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 430 DYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
.-.-+..+|.+.|++++|..+++.+.
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 44568889999999999999998653
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.11 E-value=3.2 Score=30.30 Aligned_cols=63 Identities=13% Similarity=0.153 Sum_probs=51.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 036003 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370 (558)
Q Consensus 306 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 370 (558)
+.-+..+-++.+....+.|+.....+.+.+|-+.+++..|.++|+.++.+.+- ...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence 45577788888888889999999999999999999999999999999886443 3556777764
No 253
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.86 E-value=1.6 Score=45.42 Aligned_cols=123 Identities=10% Similarity=0.021 Sum_probs=68.5
Q ss_pred HHHHHHhcCCC-chHHHHHHHHhHHCCCCCCcccH--HHHHHHHHhcCcccHHHHHHHHHHHHHh------CCCCh----
Q 036003 92 TMARGYSRSKT-PIRAIFLFVELLNSGLLPDDYSF--PSLLKACACVGAEALEEGKQLHCFAIKL------GLNSN---- 158 (558)
Q Consensus 92 ~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~~~~~------g~~~~---- 158 (558)
.++..+...|+ .+.|+.+|+++.+. .|...++ ..++..+.... ..--+|.+++.+.++. ...+.
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~-~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIE-TKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34444445566 47788888888765 2332222 22233222221 2233444444444321 11111
Q ss_pred -------HHHHHHHHHHHHhCCChHHHHHHHhccCC--C-CcchHHHHHHHHHHCCCccHHHHHHHHHH
Q 036003 159 -------LYVCTTLINLYAECSDVEAARRIFENISE--P-CVVSYNAIITAYARSSRPNEALSLFRELQ 217 (558)
Q Consensus 159 -------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 217 (558)
....+.-.+.+...|+++-|+.+-++... | +-.+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 01122223445667888888888887764 4 35678888888888888888888887763
No 254
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.61 E-value=7.4 Score=28.21 Aligned_cols=87 Identities=13% Similarity=0.026 Sum_probs=64.5
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 217 (558)
..-++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-+|.. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 567888888888877663 33344444566788999999999999998899999877754 57788888888887887
Q ss_pred HCCCCCCHHHHH
Q 036003 218 ERNLKPTDVTML 229 (558)
Q Consensus 218 ~~~~~p~~~~~~ 229 (558)
..| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 766 45444443
No 255
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.25 E-value=7.8 Score=28.14 Aligned_cols=87 Identities=15% Similarity=0.063 Sum_probs=64.2
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 217 (558)
..-++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-+|.. .+.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 577888888888877663 33344444566788999999999999999999999977754 46677788887777777
Q ss_pred HCCCCCCHHHHH
Q 036003 218 ERNLKPTDVTML 229 (558)
Q Consensus 218 ~~~~~p~~~~~~ 229 (558)
..| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 766 45444443
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.07 E-value=20 Score=32.68 Aligned_cols=168 Identities=12% Similarity=0.059 Sum_probs=101.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHH----HHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036003 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL----MFEEMMKAQVSPDEITFLGLLYACSH 338 (558)
Q Consensus 263 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~ll~~~~~ 338 (558)
|.++..=|.+.+++++|++++.. -...+.+.|+...|-+ +.+-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34566668888888888887543 3344566677655544 45556667888888888888777655
Q ss_pred cCChH-HHHHHHHHchh---hcC--CCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC
Q 036003 339 TGLVD-EGWNYFYSMRD---KYG--IVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH---NN 409 (558)
Q Consensus 339 ~g~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~---g~ 409 (558)
...-+ .=.++++++.+ +.+ -.-++.....+...|.+.|++.+|...|-.-. ..+...+..++.-+... |.
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcCCCC
Confidence 32111 11222333321 111 22367788899999999999999999886322 22455565555544444 55
Q ss_pred HHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 410 LGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 410 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
..++--++-+ .+--|.-.|+...|..+++...+
T Consensus 184 ~~e~dlf~~R--------------aVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTVAEFFSR--------------LVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHH--------------HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cchHHHHHHH--------------HHHHHHHhcCHHHHHHHHHHHHH
Confidence 4444332222 22235567889999988887653
No 257
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.05 E-value=24 Score=33.50 Aligned_cols=59 Identities=10% Similarity=0.035 Sum_probs=29.5
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHccCChHHHHHHHHHchh
Q 036003 296 AMIVAYATHGQGHKSILMFEEMMKAQVSPDE-----ITFLGLLYACSHTGLVDEGWNYFYSMRD 354 (558)
Q Consensus 296 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 354 (558)
.++..|...|++.+|.+++.++.+.--..|. ..+..-+..|...+++.++...+.....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 3455566666666666666655542111111 2233344455555666666666555543
No 258
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.69 E-value=24 Score=32.43 Aligned_cols=191 Identities=11% Similarity=0.062 Sum_probs=114.2
Q ss_pred ccHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLN----SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLF 213 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 213 (558)
+.+++.++-++.-++.|-- --..+|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++-
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~ 78 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLA 78 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHH
Confidence 3445555555555555511 1124566677778999999999998754 345567778876665554
Q ss_pred ----HHHHHCCCCCCHHHHHHHHHHHhccCChH-HHHHHHHHHH----HhC--CCCchhHHHHHHHHHHhcCCHHHHHHH
Q 036003 214 ----RELQERNLKPTDVTMLSALSSCALLGSLD-LGKWIHEYIK----KYG--LDKYVKVNTALIDMHAKCGRLDDAVSV 282 (558)
Q Consensus 214 ----~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 282 (558)
+-..+.++++|......++..+.....-+ .-..+.+++. +.| ..-+......+...|.+.+++.+|+..
T Consensus 79 ~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H 158 (336)
T 3lpz_A 79 VLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKH 158 (336)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 55566788899888888888877665422 1123333333 233 223566677788999999999999888
Q ss_pred HhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchh
Q 036003 283 FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD 354 (558)
Q Consensus 283 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 354 (558)
|-.-.++.+..+..++.-+...+... .++...-..++ -|...+++..|..++....+
T Consensus 159 ~ilg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 159 LVLGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTTSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 74322222355544444443333211 11222233333 35556788888887766664
No 259
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.26 E-value=32 Score=33.39 Aligned_cols=196 Identities=12% Similarity=0.079 Sum_probs=111.4
Q ss_pred CChHHHHHHHhccCC-----C----CcchHHHHHHHHHHCCCccHHHHHHHHHHHC-CCCCCHHHHHHHHHH----Hhcc
Q 036003 173 SDVEAARRIFENISE-----P----CVVSYNAIITAYARSSRPNEALSLFRELQER-NLKPTDVTMLSALSS----CALL 238 (558)
Q Consensus 173 g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~----~~~~ 238 (558)
|+++.|.+.+-.+.+ . .......++..|...|+++...+.+..+.+. |..+. ....++.. ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 678888777654432 2 2334667888888899998887777665433 33222 22333332 2233
Q ss_pred CChHHHHH--HHHHHHH--hC-CCC---chhHHHHHHHHHHhcCCHHHHHHHHhccCC----C-----CHHhHHHHHHHH
Q 036003 239 GSLDLGKW--IHEYIKK--YG-LDK---YVKVNTALIDMHAKCGRLDDAVSVFDNMSG----K-----DTQAWSAMIVAY 301 (558)
Q Consensus 239 ~~~~~a~~--~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-----~~~~~~~li~~~ 301 (558)
...+.... +.+.+.. .| +-. .......|...|...|++.+|.+++..+.. . -+..+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 33332211 1111110 01 111 223445678889999999999998888751 1 234577778888
Q ss_pred HHCCChHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhc
Q 036003 302 ATHGQGHKSILMFEEMMK----AQVSPDE--ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375 (558)
Q Consensus 302 ~~~~~~~~a~~~~~~m~~----~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 375 (558)
...+++.+|..++++... ....|+. ..+...+..+...+++.+|.+. |..+...+...
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~----------------y~e~~~~~~~~ 251 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY----------------LQEIYQTDAIK 251 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH----------------HHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH----------------HHHHHhccccc
Confidence 899999999998888642 2222222 2344555555666666665443 34455556666
Q ss_pred CCHHHHHHHHH
Q 036003 376 GRLDEAYRFID 386 (558)
Q Consensus 376 g~~~~A~~~~~ 386 (558)
++.......+.
T Consensus 252 ~d~~~~~~~L~ 262 (445)
T 4b4t_P 252 SDEAKWKPVLS 262 (445)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 66554444333
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.85 E-value=5.4 Score=32.35 Aligned_cols=109 Identities=6% Similarity=-0.013 Sum_probs=52.3
Q ss_pred HHHHHhcCCHHHHHHHHhccC-----CCCH-------HhHHHHHHHHHHCCChHHHHHHHHHHHHCC-CCCCH-HHHHHH
Q 036003 267 IDMHAKCGRLDDAVSVFDNMS-----GKDT-------QAWSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDE-ITFLGL 332 (558)
Q Consensus 267 ~~~~~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-~~~~~l 332 (558)
+..+...|.++.|+-+.+.+. .++. .++..+..++...+++.+|...|++..+.. .-+.. .+...+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 555666677777766665543 1221 134555666677777777777777654311 11111 111000
Q ss_pred HHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 036003 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389 (558)
Q Consensus 333 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 389 (558)
- ...... . ......+.+.---+..+|.+.+++++|+.+++.++
T Consensus 107 ~---~~ss~p-~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 107 G---NSASTP-Q----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred c---ccCCCc-c----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 0 000000 0 00122233444446677777777777777777774
No 261
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.85 E-value=16 Score=28.78 Aligned_cols=70 Identities=11% Similarity=0.133 Sum_probs=51.1
Q ss_pred CCChhHHHHHHHHHhhcCCHH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 359 VPGIKHYGCMVDLLGRAGRLD---EAYRFIDEL-PIKS--TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 359 ~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
.|+..+--.+..++.+..+.+ +++.+++++ ...| .-.....|.-++.+.|++++|.++.+.+++.+|.|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 466666666777777766554 566677666 2233 234556677889999999999999999999999873
No 262
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.63 E-value=9.5 Score=36.32 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=47.3
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchh----hcCCCCChhH
Q 036003 295 SAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD----KYGIVPGIKH 364 (558)
Q Consensus 295 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 364 (558)
..++..+...|++++++..++.+... -+-+...+..+|.++.+.|+..+|.+.|+.+.. ..|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 44566667777777777777777663 233667777888888888888888877776654 2367776554
No 263
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=82.31 E-value=8.4 Score=29.85 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=45.3
Q ss_pred CChhHHHHHHHHHhhcCCH---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 360 PGIKHYGCMVDLLGRAGRL---DEAYRFIDEL-PIKS--TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
|+..+--.+..++.+..+. .+++.+++++ ...| ....+.-|.-++.+.|++++|.++.+.+++..|.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 4555555556666665544 3456666655 2223 234566677788888888888888888888888764
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.34 E-value=7.8 Score=30.01 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=51.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 036003 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370 (558)
Q Consensus 306 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 370 (558)
|.-+..+-++.+....+.|+.......+.+|-+.+++..|.++|+-++.+.+ +...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 4556777788888888999999999999999999999999999999988643 44567777764
No 265
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=79.01 E-value=14 Score=29.39 Aligned_cols=80 Identities=8% Similarity=0.022 Sum_probs=54.8
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CCCcccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 379 DEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD--DSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 379 ~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
+.+.+.|... ..+.|+.-...-+...... +++..+|..+...+ ...+..|...+..+...|++++|.++|+.-.
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555544 3345654333333222222 34788888887655 5666779999999999999999999999988
Q ss_pred hCCCcc
Q 036003 456 DRGVLK 461 (558)
Q Consensus 456 ~~g~~~ 461 (558)
+.+-.|
T Consensus 129 ~~~A~P 134 (152)
T 4a1g_A 129 QNQAEP 134 (152)
T ss_dssp HTTCBS
T ss_pred HcCCcc
Confidence 888877
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.96 E-value=11 Score=29.11 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 036003 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALID 268 (558)
Q Consensus 208 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 268 (558)
+..+-++.+....+.|++......+.+|.+.+|+..|.++++-++..- .+...+|..++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 456667777777889999999999999999999999999999887653 233556665553
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.26 E-value=23 Score=31.31 Aligned_cols=123 Identities=15% Similarity=0.097 Sum_probs=76.3
Q ss_pred HHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC----hhHHHHHHHHHhh
Q 036003 299 VAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG----IKHYGCMVDLLGR 374 (558)
Q Consensus 299 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~ 374 (558)
....+.|..++++.....-++.. +-|...-..|+..+|-.|++++|.+-++...+. .|+ ...|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH---
Confidence 34567788888888888887753 336666777888889999999998888877643 343 3344445443
Q ss_pred cCCHHHHH-HHHHhC--C--CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHccCCCCcccHH
Q 036003 375 AGRLDEAY-RFIDEL--P--IKSTPILWRTLLSSCS--SHNNLGLAKQVIERIFELDDSHGGDYV 432 (558)
Q Consensus 375 ~g~~~~A~-~~~~~~--~--~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~ 432 (558)
+... ++|.-- + ......-...++.+.. ..|+.++|.++-.++.+.-|..+.+.+
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~ 138 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 138 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC
Confidence 2221 222211 1 1112223344555543 468999999999999887766655433
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.86 E-value=19 Score=26.16 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=60.2
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHH
Q 036003 239 GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318 (558)
Q Consensus 239 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 318 (558)
...++|.-|-+.+...+. ...+--+-+..+...|++++|..+.+....||...|-++.. .+.|..+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356677777776666553 22222233455677899999999999999899998877654 57788888888887887
Q ss_pred HCCCCCCHHHHH
Q 036003 319 KAQVSPDEITFL 330 (558)
Q Consensus 319 ~~g~~p~~~~~~ 330 (558)
.+| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 765 34444443
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.03 E-value=20 Score=26.06 Aligned_cols=87 Identities=17% Similarity=0.202 Sum_probs=58.1
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHH
Q 036003 239 GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318 (558)
Q Consensus 239 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 318 (558)
...++|.-|-+.+...+. ...+--+-+..+...|++++|..+.+....||...|-++.. .+.|..+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356677777666666553 22222233455677899999999999988888888877655 46677778887777777
Q ss_pred HCCCCCCHHHHH
Q 036003 319 KAQVSPDEITFL 330 (558)
Q Consensus 319 ~~g~~p~~~~~~ 330 (558)
.+| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 665 34444443
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.18 E-value=5.6 Score=35.18 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=32.5
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 371 LLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 371 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
.+.+.|++++|++....- +..| |...-..++..+|-.|++++|.+-++-..+++|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 345566666666555443 3333 4444455566666666666666666666666654
No 271
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=74.26 E-value=20 Score=28.97 Aligned_cols=79 Identities=9% Similarity=-0.026 Sum_probs=52.5
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 380 EAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD--DSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 380 ~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
.+.+.|... ..+.|+.....-+...-.. +.+..+|..|...+ ...+..|...+..+...|++.+|.++|+.-.+
T Consensus 48 rc~~~f~~~~~YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 48 RAVEALQGEKRYYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp HHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444333 3345654433333222222 33667788887654 66667799999999999999999999999988
Q ss_pred CCCcc
Q 036003 457 RGVLK 461 (558)
Q Consensus 457 ~g~~~ 461 (558)
.+..|
T Consensus 125 ~~A~P 129 (164)
T 2wvi_A 125 QKAEP 129 (164)
T ss_dssp TTCBS
T ss_pred cCCCc
Confidence 88877
No 272
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=74.16 E-value=25 Score=32.83 Aligned_cols=64 Identities=9% Similarity=0.186 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCC---HHhHHHHHHHHHHCCC--hHHHHHHHHHHHHCCCCCCHH
Q 036003 264 TALIDMHAKCGRLDDAVSVFDNMSGKD---TQAWSAMIVAYATHGQ--GHKSILMFEEMMKAQVSPDEI 327 (558)
Q Consensus 264 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~ 327 (558)
+.++.-|...|+.++|.+.++++..+. ......+..++-+.++ .+....++..+...|+-+...
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 457788888899999999999887663 2334444444444333 345777777777777654443
No 273
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.24 E-value=27 Score=33.72 Aligned_cols=57 Identities=12% Similarity=-0.038 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCC------CHHhHHHHHHHHHHCCChHHHHHHHHHHH
Q 036003 262 VNTALIDMHAKCGRLDDAVSVFDNMSGK------DTQAWSAMIVAYATHGQGHKSILMFEEMM 318 (558)
Q Consensus 262 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 318 (558)
+...+...|.+.|++++|.+.|.++... -...+-.++..+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3455677777777777777777766522 23445566666666677777666666654
No 274
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=66.59 E-value=47 Score=29.14 Aligned_cols=113 Identities=16% Similarity=0.085 Sum_probs=51.3
Q ss_pred HHHHhhcCCCCCCHHHHHHHHccCCCCCcc----cHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCc---ccHHHHHHH
Q 036003 59 LINFCTQNPTTSSMEHAHLLFDRIPEPDIV----LFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDD---YSFPSLLKA 131 (558)
Q Consensus 59 li~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~ 131 (558)
.+...++. |+++....+++.-...+.. -+ ..+...+..|+.+ +++.+.+.|..|+. ...+.+..+
T Consensus 8 ~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A 79 (285)
T 1wdy_A 8 LLIKAVQN---EDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHT---TCHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred HHHHHHHc---CCHHHHHHHHHcCCCcccccCCCCC-cHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 34444555 7777777777654433221 12 2333444555543 33344445554432 222333333
Q ss_pred HHhcCcccHHHHHHHHHHHHHhCCCChHHH--HHHHHHHHHhCCChHHHHHHHhccC
Q 036003 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYV--CTTLINLYAECSDVEAARRIFENIS 186 (558)
Q Consensus 132 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~ 186 (558)
+ .. |+.+ +++.+++.|..++... ....+...++.|+.+-...+++.-.
T Consensus 80 ~-~~--~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 129 (285)
T 1wdy_A 80 A-IA--GSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129 (285)
T ss_dssp H-HH--TCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred H-Hc--CCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCC
Confidence 2 33 4443 3344444554443211 1123344456677666666666543
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.01 E-value=18 Score=34.97 Aligned_cols=95 Identities=9% Similarity=-0.090 Sum_probs=58.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHchhhc-CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHH----
Q 036003 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKY-GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKSTPILWR---- 398 (558)
Q Consensus 328 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~---- 398 (558)
+...+..-|.+.|+++.|.++|.++.... +...-...+-.+++.+...+++..+...+.+. ...++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45667777888888888888888877642 11222456667777777888888887777765 1222322211
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHc
Q 036003 399 TLLSSCSSHNNLGLAKQVIERIFE 422 (558)
Q Consensus 399 ~l~~~~~~~g~~~~a~~~~~~~~~ 422 (558)
.-+..+...+++..|.+.|-++..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 112223456777777777766653
No 276
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=61.64 E-value=94 Score=28.17 Aligned_cols=64 Identities=13% Similarity=0.089 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCC--hHHHHHHHHHHHhCCCc
Q 036003 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR--WEDVDYLRKLMKDRGVL 460 (558)
Q Consensus 397 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~g~~ 460 (558)
...++.-|...|+.++|.+.++++..-.-....++..+..++.+.++ .+...+++..+.+.|+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 45566667777777777777776642110001122233333333322 23355566666555544
No 277
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=58.55 E-value=25 Score=30.01 Aligned_cols=51 Identities=10% Similarity=0.011 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHccC--CCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 036003 411 GLAKQVIERIFELD--DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLK 461 (558)
Q Consensus 411 ~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 461 (558)
+.+..+|..|...+ ...+..|...+..+...|++.+|.++|+.-.+.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 46678888887654 6666789999999999999999999999988887776
No 278
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=56.37 E-value=57 Score=28.25 Aligned_cols=87 Identities=8% Similarity=-0.078 Sum_probs=44.7
Q ss_pred HHHHHhcCCCchHHHHHHHHhHHC--CCCC----CcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 036003 93 MARGYSRSKTPIRAIFLFVELLNS--GLLP----DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI 166 (558)
Q Consensus 93 li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 166 (558)
-++.+....++++|++++++..+. ++++ +.......++.-... +.-.-+..+.+.+ .. .++.......+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~e--R~~~L~~~L~~~l-~~--~~~~~~~r~~v 98 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQ--RREAISSKLSQSI-LS--SNEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHH--HHHHHHHHHHHHH-HT--CSSHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHH--HHHHHHHHHHHHH-Hh--cCCHHHHHHHH
Confidence 367788888899998888876543 3332 112222223322222 2233333333333 22 33444444555
Q ss_pred HHHHhCCChHHHHHHHhc
Q 036003 167 NLYAECSDVEAARRIFEN 184 (558)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~ 184 (558)
..+.+.|+-++|.++|=+
T Consensus 99 ~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHH
Confidence 666677777777666643
No 279
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=56.37 E-value=1.4e+02 Score=28.31 Aligned_cols=281 Identities=10% Similarity=0.004 Sum_probs=126.0
Q ss_pred HHHHHHHHhCCChHHHHHHHhccCC--------CCcchHHHHHHHHHHCC-CccHHHHHHHHHHHCCCCCCHHHH-----
Q 036003 163 TTLINLYAECSDVEAARRIFENISE--------PCVVSYNAIITAYARSS-RPNEALSLFRELQERNLKPTDVTM----- 228 (558)
Q Consensus 163 ~~ll~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~----- 228 (558)
..|...|.+.|+.++..+++..... ........++..+.... ..+.-.++..+..+.. .-+..+|
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~l 101 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3456666666666666666665543 11122344444444432 2222223332222210 0011122
Q ss_pred -HHHHHHHhccCChHHHHHHHHHHHHhCCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHhccCC------CCHHh---
Q 036003 229 -LSALSSCALLGSLDLGKWIHEYIKKYGLDKY-----VKVNTALIDMHAKCGRLDDAVSVFDNMSG------KDTQA--- 293 (558)
Q Consensus 229 -~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~--- 293 (558)
..++..|...|++.+|..++..+.+.--..| ..++..-+..|...|++.++...+..... .++..
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 1355566666666666666666654311111 23344445556666666666666654421 11111
Q ss_pred -HHHHHHHHH-HCCChHHHHHHHHHHHHCC---CCC---CHHHHHHHHHHHHccCChHHHHHHH-HHchhhcCCCCChhH
Q 036003 294 -WSAMIVAYA-THGQGHKSILMFEEMMKAQ---VSP---DEITFLGLLYACSHTGLVDEGWNYF-YSMRDKYGIVPGIKH 364 (558)
Q Consensus 294 -~~~li~~~~-~~~~~~~a~~~~~~m~~~g---~~p---~~~~~~~ll~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~ 364 (558)
.-.-...+. ..+++..|...|-+..+.= ..| +...|..|.. ... ++..+-..++ +.....+ ..|....
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a-Ll~-~~r~el~~~l~~~~~~~~-~~pei~~ 258 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK-IML-GQSDDVNQLVSGKLAITY-SGRDIDA 258 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HHT-TCGGGHHHHHHSHHHHTT-CSHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-HHc-CCHHHHHHHhcccccccc-CCccHHH
Confidence 111122344 5667777766665543210 011 1122322222 222 2222222222 1111111 2355555
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHH
Q 036003 365 YGCMVDLLGRAGRLDEAYRFIDEL--PIKSTPILW---RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439 (558)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 439 (558)
+..++.+| ..+++.+..++++.. ....|+... ..+..... ...+.++. .|-....+..+...+.
T Consensus 259 l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~~~L~~i~--~pYsrIsl~~iA~~l~ 327 (394)
T 3txn_A 259 MKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------EQNLCRII--EPYSRVQVAHVAESIQ 327 (394)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------HHHHHHHH--TTCSEEEHHHHHHHHT
T ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------HHHHHHHh--HhhceeeHHHHHHHHC
Confidence 56666665 345777777777665 233354321 11111000 11111111 2444455666666654
Q ss_pred hcCChHHHHHHHHHHHhCCCc
Q 036003 440 RAGRWEDVDYLRKLMKDRGVL 460 (558)
Q Consensus 440 ~~g~~~~A~~~~~~m~~~g~~ 460 (558)
- ..+++...+-+|...|..
T Consensus 328 l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 328 L--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp C--CHHHHHHHHHHHHHTTSS
T ss_pred c--CHHHHHHHHHHHHHCCCe
Confidence 3 578999999999887764
No 280
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=55.69 E-value=48 Score=25.51 Aligned_cols=63 Identities=10% Similarity=0.199 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCC---HHhHHHHHHHHHHCCC--hHHHHHHHHHHHHCCCCCCH
Q 036003 264 TALIDMHAKCGRLDDAVSVFDNMSGKD---TQAWSAMIVAYATHGQ--GHKSILMFEEMMKAQVSPDE 326 (558)
Q Consensus 264 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~ 326 (558)
..++.-|...|+.++|.+.++++..+. ......+..++-+.++ .+.+..++..+...|+-+..
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 456777888888888888888887552 2233444444444332 35567777777776654433
No 281
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=53.84 E-value=88 Score=28.46 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHhccCCchHHHHHHHHHHhCCCCChh----HHHHHHHHhhcCCCCCCHHHHHHHHccCCC
Q 036003 19 TNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLN----VLTKLINFCTQNPTTSSMEHAHLLFDRIPE 84 (558)
Q Consensus 19 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~li~~~~~~~~~~~~~~A~~~~~~~~~ 84 (558)
.+..--+.|+.|+. .+++. +-+.+++.|..++.. -++.|.- -+.. |+.+-+.-+++.-..
T Consensus 21 ~~~~~~t~L~~Av~-~g~~~-~V~~LL~~Gadvn~~~~~~g~TpLh~-A~~~---g~~~iv~~Ll~~ga~ 84 (337)
T 4g8k_A 21 AAVEDNHLLIKAVQ-NEDVD-LVQQLLEGGANVNFQEEEGGWTPLHN-AVQM---SREDIVELLLRHGAD 84 (337)
T ss_dssp CHHHHHHHHHHHHH-TTCHH-HHHHHHHHTCCTTCCCTTTCCCHHHH-HHHT---TCHHHHHHHHHTTCC
T ss_pred CCCCCChHHHHHHH-cCCHH-HHHHHHHCCCCCCccCCCCCcCHHHH-HHHc---CCHHHHHHHHHcCCc
Confidence 33333344555543 34443 334445667766532 1233333 3445 777777777765443
No 282
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.73 E-value=1.6e+02 Score=29.02 Aligned_cols=61 Identities=8% Similarity=0.028 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCCCCH-------Hh-HHHHHHHHHHCCChHHHHHHHHHHHHC
Q 036003 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDT-------QA-WSAMIVAYATHGQGHKSILMFEEMMKA 320 (558)
Q Consensus 260 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~-~~~li~~~~~~~~~~~a~~~~~~m~~~ 320 (558)
..++|.+++.|...+.++.|..+..+..-|.. .. +-.+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45667788888888888888888887764411 11 223456677788899998888887764
No 283
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=51.01 E-value=1.4e+02 Score=27.07 Aligned_cols=126 Identities=13% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhc---CC
Q 036003 301 YATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA---GR 377 (558)
Q Consensus 301 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~ 377 (558)
+...|++++|+..|+... +...+.......+.+++.+++....+- ....-+..-.+. .+
T Consensus 124 ~~t~gKf~eAl~~Fr~iL----------~~i~l~~v~~~~e~~e~~eli~icrEY--------ilal~iEl~Rr~l~~~~ 185 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAI----------YRITLLMVDDAEDEKLAHKILETAREY--------ILGLSIELERRSLKEGN 185 (325)
T ss_dssp HHHTTCHHHHHHHHHHHH----------HHHHTCCBCSSHHHHHHHHHHHHHHHH--------HHHHHHHHHHHTCCTTC
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhheeeeccHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhcCccc
Q ss_pred HHHHHHHHHhC---CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHH
Q 036003 378 LDEAYRFIDEL---PIKS--TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452 (558)
Q Consensus 378 ~~~A~~~~~~~---~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 452 (558)
..+..++---+ +..| -..+.+.-+..+.+.+++..|..+.+++++++|+ ....++|.+++.
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~--------------~~~a~qArkil~ 251 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS--------------GPRAEQARKIKN 251 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS--------------SHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--------------HHHHHHHHHHHH
Q ss_pred HHHhCC
Q 036003 453 LMKDRG 458 (558)
Q Consensus 453 ~m~~~g 458 (558)
.-.+.+
T Consensus 252 ~ce~~~ 257 (325)
T 3mv2_A 252 KADSMA 257 (325)
T ss_dssp HHHTSC
T ss_pred HHhcCC
No 284
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=51.01 E-value=82 Score=32.18 Aligned_cols=42 Identities=21% Similarity=0.141 Sum_probs=23.0
Q ss_pred HHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHh
Q 036003 92 TMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134 (558)
Q Consensus 92 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 134 (558)
++|-.+.|.|++++|.++.++.... ++--...|...+..++.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 4566777888888888877665432 11112456666666653
No 285
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=50.77 E-value=1.1e+02 Score=25.46 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHhCCC
Q 036003 158 NLYVCTTLINLYAECSD 174 (558)
Q Consensus 158 ~~~~~~~ll~~~~~~g~ 174 (558)
+..+-...+..+.+.|+
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33333334444444444
No 286
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=49.78 E-value=1.1e+02 Score=26.64 Aligned_cols=169 Identities=16% Similarity=0.100 Sum_probs=82.2
Q ss_pred HHHHHHHhCCCCChh---HHHHHHHHhhcCCCCCCHHHHHHHHccCCCCC---cccHHHHHHHHhcCCCchHHHHHHHHh
Q 036003 40 IHAVTIKTHLQNDLN---VLTKLINFCTQNPTTSSMEHAHLLFDRIPEPD---IVLFNTMARGYSRSKTPIRAIFLFVEL 113 (558)
Q Consensus 40 ~~~~~~~~g~~~~~~---~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m 113 (558)
+...+.+.|..++.. .....+...+.. |+.+-+..+++.-..++ ..-++.+ ...+..|+. ++++.+
T Consensus 20 ~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~----~~v~~L 91 (285)
T 1wdy_A 20 LVQQLLEGGANVNFQEEEGGWTPLHNAVQM---SREDIVELLLRHGADPVLRKKNGATPF-LLAAIAGSV----KLLKLF 91 (285)
T ss_dssp HHHHHHHTTCCTTCCCTTTCCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHHTCH----HHHHHH
T ss_pred HHHHHHHcCCCcccccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCcccCCCCCCHH-HHHHHcCCH----HHHHHH
Confidence 444555667655432 112344555566 88988888887654432 2223333 333445554 345555
Q ss_pred HHCCCCCCcc---cHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHH------------HHHHHHHHHhCCChHHH
Q 036003 114 LNSGLLPDDY---SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYV------------CTTLINLYAECSDVEAA 178 (558)
Q Consensus 114 ~~~g~~p~~~---~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~------------~~~ll~~~~~~g~~~~A 178 (558)
.+.|..++.. .++.+..++ .. |+.+ +++.+.+.|..++... ....+...++.|+.+-+
T Consensus 92 l~~g~~~~~~~~~g~t~L~~A~-~~--~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v 164 (285)
T 1wdy_A 92 LSKGADVNECDFYGFTAFMEAA-VY--GKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 164 (285)
T ss_dssp HHTTCCTTCBCTTCCBHHHHHH-HT--TCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHH
T ss_pred HHcCCCCCccCcccCCHHHHHH-Hh--CCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHH
Confidence 5666655432 333444443 44 5544 4445556665544220 11234445566777777
Q ss_pred HHHHhccC-C---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCC
Q 036003 179 RRIFENIS-E---PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT 224 (558)
Q Consensus 179 ~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 224 (558)
..+++... . .|..-.+.+. ..+..++.....++++.+.+.|..++
T Consensus 165 ~~Ll~~~~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 165 KILLDEMGADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHHHHTSCCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHHHHhcCCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCCCCC
Confidence 76666522 1 2222222222 23334454444555555555554443
No 287
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=49.59 E-value=10 Score=26.77 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=23.3
Q ss_pred CChHHHHHHHHHHHHHHHHcCcccCCCC
Q 036003 485 SYSTDLQKALDELVKELKMVGYVPDTSL 512 (558)
Q Consensus 485 ~~~~~~~~~~~~l~~~m~~~g~~pd~~~ 512 (558)
++..++...+++...+++..|+.||--.
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL 40 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIIL 40 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEE
Confidence 4466788889999999999999999543
No 288
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=49.56 E-value=95 Score=27.50 Aligned_cols=180 Identities=5% Similarity=-0.043 Sum_probs=84.5
Q ss_pred HHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCChHHHH
Q 036003 270 HAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE---ITFLGLLYACSHTGLVDEGW 346 (558)
Q Consensus 270 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~ 346 (558)
.+..|+.+-+..+++.-...+...-.+.+...+..|+.+-+ +.+.+.|..++. ...+.|. ..+..|..+-+.
T Consensus 38 A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~-~A~~~g~~~~v~ 112 (285)
T 3kea_A 38 AIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALY-YAVDSGNMQTVK 112 (285)
T ss_dssp HHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHH-HHHHcCCHHHHH
Confidence 34455555555554432211110011223333445554433 334445554432 1222233 334556665554
Q ss_pred HHHHHchhhcCCCCCh---hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 036003 347 NYFYSMRDKYGIVPGI---KHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423 (558)
Q Consensus 347 ~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 423 (558)
-+++. |..++. ..+...+...+..|+.+-+..+++.-....+...-.+.+...+..|+.+-+..+++.-...
T Consensus 113 ~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~ 187 (285)
T 3kea_A 113 LFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTST 187 (285)
T ss_dssp HHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCC
Confidence 44443 333322 2222344445567777766666665432222212234455556788888888888776655
Q ss_pred CCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCccCC
Q 036003 424 DDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVP 463 (558)
Q Consensus 424 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 463 (558)
+..+..-....+..-...|+. ++.+.+.+.|..++.
T Consensus 188 n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 188 NTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYS 223 (285)
T ss_dssp CTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTT
T ss_pred CcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCC
Confidence 533333223222223344553 455566677776654
No 289
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=49.43 E-value=1.2e+02 Score=25.49 Aligned_cols=53 Identities=8% Similarity=-0.078 Sum_probs=30.3
Q ss_pred ccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 036003 206 PNEALSLFRELQERNLKPT-DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258 (558)
Q Consensus 206 ~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 258 (558)
..++.++|..|...|+--. ...|......+...|++.+|..+|+.-.+.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4566666766666655332 2345555555556666666666666665555444
No 290
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=47.78 E-value=2.2e+02 Score=29.02 Aligned_cols=78 Identities=8% Similarity=-0.018 Sum_probs=37.6
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHC---CCc
Q 036003 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS---SRP 206 (558)
Q Consensus 130 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~ 206 (558)
.++.-. |++|.|.+.+-.. ...+...+...+.- .|-+.....++..-......-+..||..|.+. .++
T Consensus 302 ~vLlLt--gqFE~AI~~L~~~----~~vdAVH~AIaL~~---~gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~ 372 (661)
T 2qx5_A 302 QTLLLS--GLYGLAIDYTYTF----SEMDAVHLAIGLAS---LKLFKIDSSTRLTKKPKRDIRFANILANYTKSFRYSDP 372 (661)
T ss_dssp HHHHHT--TCHHHHHHHHHTT----CHHHHHHHHHHHHH---TTC-----------------CHHHHHHHHHTTTTTTCH
T ss_pred HHHHHH--hhHHHHHHHHHhc----CchhHHHHHHHHHH---cCCccCCCcccccCCCcccccHHHHHHHHHHHhhcCCH
Confidence 334444 8899999877643 23344444444433 33333211111110011122366778777754 678
Q ss_pred cHHHHHHHHH
Q 036003 207 NEALSLFREL 216 (558)
Q Consensus 207 ~~A~~~~~~m 216 (558)
.+|++.|--+
T Consensus 373 ~~Al~Y~~li 382 (661)
T 2qx5_A 373 RVAVEYLVLI 382 (661)
T ss_dssp HHHHHHHHGG
T ss_pred HHHHHHHHHH
Confidence 8888877666
No 291
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=47.62 E-value=1.1e+02 Score=25.97 Aligned_cols=83 Identities=13% Similarity=-0.006 Sum_probs=36.7
Q ss_pred HHhcCCCchHHHHHHHHhHHCCCCCCcc---cHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHH--HHHHHHHHH
Q 036003 96 GYSRSKTPIRAIFLFVELLNSGLLPDDY---SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYV--CTTLINLYA 170 (558)
Q Consensus 96 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~ 170 (558)
..++.|+.+.+..+++.+.+.|..++.. -.+.+..+ +.. |+.+ +++.+++.|..++... -...+...+
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A-~~~--~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA-VIT--TLPS----VVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHH-HHT--TCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHH-HHc--CCHH----HHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 3445566666555555555554443322 22223222 233 4443 3334444554433211 112233344
Q ss_pred hCCChHHHHHHHhcc
Q 036003 171 ECSDVEAARRIFENI 185 (558)
Q Consensus 171 ~~g~~~~A~~~~~~~ 185 (558)
+.|+.+-+..+++..
T Consensus 88 ~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 88 EHRSPTCLRALLDSA 102 (241)
T ss_dssp HTTCHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHcC
Confidence 556666665555554
No 292
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=47.59 E-value=2.4e+02 Score=28.58 Aligned_cols=411 Identities=8% Similarity=-0.058 Sum_probs=218.7
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHhCCCC-ChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHHHHHHHHhcCC
Q 036003 23 NALSLLPRCTSFRGLKQIHAVTIKTHLQN-DLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSK 101 (558)
Q Consensus 23 ~~~~ll~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 101 (558)
.|..+....... ...+|...+.+..-.| ....-+..+..+.+. +++.....++.. +..+...-.....+....|
T Consensus 42 ~y~~l~~~l~~~-~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~---~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G 116 (618)
T 1qsa_A 42 EYRQITDDLMNQ-PAVTVTNFVRANPTLPPARTLQSRFVNELARR---EDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTG 116 (618)
T ss_dssp HHHHHHHTGGGC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHT---TCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCcccC-CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhC---CCHHHHHHhccC-CCCCHHHHHHHHHHHHHcC
Confidence 454444443322 3356777776653323 234456667777777 899999997776 4335555555677888889
Q ss_pred CchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhC-----------CCChHH-HHHHHHHHH
Q 036003 102 TPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG-----------LNSNLY-VCTTLINLY 169 (558)
Q Consensus 102 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g-----------~~~~~~-~~~~ll~~~ 169 (558)
+..+|....+.+-..|- .....+..++..+.+.+.-..+....-++.+...| ++++.. ....++..+
T Consensus 117 ~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~ 195 (618)
T 1qsa_A 117 QSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLA 195 (618)
T ss_dssp CHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 98888888888876653 35667778888877552112233333333444333 111211 112222222
Q ss_pred HhCCChHHHHHHHhccCCCCcc---hHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHH----HHHHHHhccCChH
Q 036003 170 AECSDVEAARRIFENISEPCVV---SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTML----SALSSCALLGSLD 242 (558)
Q Consensus 170 ~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~----~ll~~~~~~~~~~ 242 (558)
.. ...+....... .++.. .+..-+.-+.+ .+.+.|...+....+.. ..+..... .+.......+...
T Consensus 196 ~~---p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~ 269 (618)
T 1qsa_A 196 NN---PNTVLTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTD 269 (618)
T ss_dssp HC---GGGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCH
T ss_pred hC---hHhHHHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCCh
Confidence 11 11222222221 11111 11112223333 37889999998886543 22333322 2222333445355
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC---HHhHHHHHHHHHHCCChHHHHHHHHHHHH
Q 036003 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD---TQAWSAMIVAYATHGQGHKSILMFEEMMK 319 (558)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 319 (558)
++...+....... .+.....-.+....+.|+++.|...|+.|.... ....-=+..++...|+.++|..+|+.+..
T Consensus 270 ~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 270 EQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 6666666554433 232233344455567899999999999997542 22223345577789999999999999875
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC-hh-----HHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 036003 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG-IK-----HYGCMVDLLGRAGRLDEAYRFIDELPIKST 393 (558)
Q Consensus 320 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 393 (558)
. . +|-.++. ..+.|.... +.. ....+. .. .-..-+..+...|....|...+..+....+
T Consensus 348 ~----~--~fYg~lA-a~~Lg~~~~-------~~~-~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~ 412 (618)
T 1qsa_A 348 Q----R--GFYPMVA-AQRIGEEYE-------LKI-DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKS 412 (618)
T ss_dssp S----C--SHHHHHH-HHHTTCCCC-------CCC-CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred C----C--ChHHHHH-HHHcCCCCC-------CCC-CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCC
Confidence 2 2 2333332 223332100 000 000010 00 111234567788999999888777622344
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC---CCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 036003 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELDD---SHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKV 462 (558)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 462 (558)
......+.......|..+.+.....+....+. .-+..|..++.-+++...++.++-.---..+.++.|.
T Consensus 413 ~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 413 KTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPK 484 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCC
Confidence 44444555556678888888766654433220 1133566777777766666665443233345566553
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=47.42 E-value=43 Score=26.68 Aligned_cols=63 Identities=10% Similarity=0.199 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCC---HHhHHHHHHHHHHCCC--hHHHHHHHHHHHHCCCCCCH
Q 036003 264 TALIDMHAKCGRLDDAVSVFDNMSGKD---TQAWSAMIVAYATHGQ--GHKSILMFEEMMKAQVSPDE 326 (558)
Q Consensus 264 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~ 326 (558)
+.++.-|...|+.++|.+.++++..+. ..+...+..++-+.++ .+.+..++..+...|+-+..
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 456777777888888888888876552 2233344444444322 34566777777766654433
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.42 E-value=65 Score=31.67 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCCh--hHH-HHHHHHHhhcCCHHHHHHHHHhC
Q 036003 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI--KHY-GCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 327 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~-~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
..++.+++.|...+.++.|..+..+..--....++. ..| -.+...+.-.+++.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 567777788888888888888777663100001111 112 23345566677888887777664
No 295
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=46.10 E-value=1.2e+02 Score=24.81 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=6.8
Q ss_pred CHHHHHHHHHHHhccCC
Q 036003 224 TDVTMLSALSSCALLGS 240 (558)
Q Consensus 224 ~~~~~~~ll~~~~~~~~ 240 (558)
+...-...+.++.+.|.
T Consensus 151 ~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 151 DGWVRQSAADALGEIGG 167 (201)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33333334444444443
No 296
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=43.97 E-value=1.4e+02 Score=24.76 Aligned_cols=9 Identities=0% Similarity=0.312 Sum_probs=3.5
Q ss_pred HHHHHHHHh
Q 036003 105 RAIFLFVEL 113 (558)
Q Consensus 105 ~A~~~~~~m 113 (558)
+++..+..+
T Consensus 19 ~~~~~L~~~ 27 (211)
T 3ltm_A 19 EKVEMYIKN 27 (211)
T ss_dssp GGHHHHHHH
T ss_pred hHHHHHHHH
Confidence 333333333
No 297
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=42.49 E-value=1.5e+02 Score=24.76 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=40.6
Q ss_pred HHHHHHHH---HCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-----hHHHHHHHHHHHHhCCCC
Q 036003 194 NAIITAYA---RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS-----LDLGKWIHEYIKKYGLDK 258 (558)
Q Consensus 194 ~~li~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 258 (558)
.-+|+++. +-.+++.|+-.+.+|.+.| .|....=..++.+....|. +..|...++.....|.+.
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 33555554 4578999999999999998 6665555555666555553 234455555555666443
No 298
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=40.67 E-value=1.4e+02 Score=24.89 Aligned_cols=60 Identities=22% Similarity=0.188 Sum_probs=31.7
Q ss_pred HHHHHHHHHhCCCCCCH--HH-----HHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHH
Q 036003 378 LDEAYRFIDELPIKSTP--IL-----WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 378 ~~~A~~~~~~~~~~~~~--~~-----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
++.|+.+|+.+...-+. .. --..+..|.+.|.+++|.++|++..+..+.+...-.-|+..
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 45666677766322221 11 12234567888888888888888777665554443333333
No 299
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=40.43 E-value=1.1e+02 Score=25.68 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=10.8
Q ss_pred HHHHHhCCChHHHHHHHhc
Q 036003 166 INLYAECSDVEAARRIFEN 184 (558)
Q Consensus 166 l~~~~~~g~~~~A~~~~~~ 184 (558)
+...++.|+.+-+..+++.
T Consensus 113 l~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 113 IHLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCHHHHHHHHHhc
Confidence 3444556666666666554
No 300
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.21 E-value=41 Score=25.92 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=11.9
Q ss_pred HHHHHHhcCCCchHHHHHHHHh
Q 036003 92 TMARGYSRSKTPIRAIFLFVEL 113 (558)
Q Consensus 92 ~li~~~~~~g~~~~A~~~~~~m 113 (558)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3455555555555555555554
No 301
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=37.47 E-value=2.5e+02 Score=26.43 Aligned_cols=105 Identities=17% Similarity=0.132 Sum_probs=44.9
Q ss_pred CCHHHHHHHHccCCCCCccc--HHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCc---ccHHHHHHHHHhcCcccHHHHH
Q 036003 70 SSMEHAHLLFDRIPEPDIVL--FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDD---YSFPSLLKACACVGAEALEEGK 144 (558)
Q Consensus 70 ~~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~~~a~ 144 (558)
|+++-+..+++.-..++... ....+...++.|+.+-+..++ +.|..++. ...+.|..+ +.. |+.+
T Consensus 25 g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A-~~~--g~~~--- 94 (437)
T 1n11_A 25 GHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHCA-ARI--GHTN--- 94 (437)
T ss_dssp TCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHHH-HHH--TCHH---
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHH-HHC--CCHH---
Confidence 77777777777644433221 112233344555544333333 33433322 222233333 233 4443
Q ss_pred HHHHHHHHhCCCChHHH--HHHHHHHHHhCCChHHHHHHHhcc
Q 036003 145 QLHCFAIKLGLNSNLYV--CTTLINLYAECSDVEAARRIFENI 185 (558)
Q Consensus 145 ~~~~~~~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~~ 185 (558)
+.+.+++.|..++... ....+...++.|+.+.+..+++.-
T Consensus 95 -~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 136 (437)
T 1n11_A 95 -MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136 (437)
T ss_dssp -HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred -HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Confidence 3333344454433211 112233444556666666666543
No 302
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=36.12 E-value=99 Score=25.23 Aligned_cols=14 Identities=0% Similarity=0.105 Sum_probs=8.7
Q ss_pred CCHHHHHHHHccCC
Q 036003 70 SSMEHAHLLFDRIP 83 (558)
Q Consensus 70 ~~~~~A~~~~~~~~ 83 (558)
|+.+....++..-.
T Consensus 16 g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 16 RDTKKVKEILQDTT 29 (201)
T ss_dssp TCHHHHHHHHTCTT
T ss_pred ccHHHHHHHHHcCC
Confidence 66666666666543
No 303
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=35.89 E-value=1.1e+02 Score=27.16 Aligned_cols=13 Identities=8% Similarity=0.066 Sum_probs=8.1
Q ss_pred CCHHHHHHHHccC
Q 036003 70 SSMEHAHLLFDRI 82 (558)
Q Consensus 70 ~~~~~A~~~~~~~ 82 (558)
|+.+-+..+++.-
T Consensus 42 g~~~~v~~Ll~~g 54 (285)
T 3kea_A 42 NNVRLVCTLLNAG 54 (285)
T ss_dssp TCHHHHHHHHHTT
T ss_pred CCHHHHHHHHhCC
Confidence 6666666666553
No 304
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=35.03 E-value=3.4e+02 Score=26.74 Aligned_cols=69 Identities=10% Similarity=-0.029 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHc-cCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036003 391 KSTPILWRTLLSSCSSHNNLGLAKQV----IERIFE-LDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 391 ~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (558)
..|......+-.-+...|..++-+++ ++..++ ..|.+......|-..|.+.|++-+|.+++-.+-..+.
T Consensus 175 s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~~ 248 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSNF 248 (525)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSSS
T ss_pred CChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCCC
Confidence 45665556666666666654443221 111111 2244445566677778888888888888888876643
No 305
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=34.48 E-value=2e+02 Score=23.97 Aligned_cols=69 Identities=14% Similarity=0.095 Sum_probs=40.8
Q ss_pred cccHHHHHHHHhc---CCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCc---ccHHHHHHHHHHHHHhCCC
Q 036003 87 IVLFNTMARGYSR---SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA---EALEEGKQLHCFAIKLGLN 156 (558)
Q Consensus 87 ~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~~~a~~~~~~~~~~g~~ 156 (558)
...+.-+|+++.+ -.+++.|+-++.+|++.| .|....-..++-+.-..|. .-+..|...++.....|.+
T Consensus 11 Gd~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 11 GDAHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3345556666654 578999999999999988 6554444444444433311 2244455556666666654
No 306
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=34.32 E-value=1.9e+02 Score=23.56 Aligned_cols=81 Identities=11% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCC-----------------HHHHHH
Q 036003 168 LYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT-----------------DVTMLS 230 (558)
Q Consensus 168 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----------------~~~~~~ 230 (558)
.+.-.|.+..++-++.....-...-|..| +|-+..++.+|+..++.+....+..| ...++.
T Consensus 42 ~LyyngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l 119 (242)
T 3kae_A 42 VLYLNGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESL 119 (242)
T ss_dssp HHHHTTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHH
T ss_pred hhhhcchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHH
Q ss_pred HHHHHhccCChHHHHHHHHH
Q 036003 231 ALSSCALLGSLDLGKWIHEY 250 (558)
Q Consensus 231 ll~~~~~~~~~~~a~~~~~~ 250 (558)
+...|.+.|+.++|...+..
T Consensus 120 ~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 120 LGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHhhhHhhh
No 307
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.84 E-value=56 Score=26.00 Aligned_cols=23 Identities=22% Similarity=0.171 Sum_probs=14.1
Q ss_pred HHHHHHHhcCCCchHHHHHHHHh
Q 036003 91 NTMARGYSRSKTPIRAIFLFVEL 113 (558)
Q Consensus 91 ~~li~~~~~~g~~~~A~~~~~~m 113 (558)
+.++.-|...|+.++|.+.++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 34555666666666666666665
No 308
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=33.67 E-value=1.8e+02 Score=23.59 Aligned_cols=18 Identities=6% Similarity=-0.014 Sum_probs=10.1
Q ss_pred HHHHhCCChHHHHHHHhc
Q 036003 167 NLYAECSDVEAARRIFEN 184 (558)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~ 184 (558)
...+..|+.+-+..+++.
T Consensus 77 ~~A~~~~~~~~~~~Ll~~ 94 (201)
T 3hra_A 77 LYAGAQGRTEILAYMLKH 94 (201)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhc
Confidence 344456666666666643
No 309
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=33.15 E-value=1.4e+02 Score=25.83 Aligned_cols=21 Identities=5% Similarity=-0.105 Sum_probs=12.0
Q ss_pred HHHHHHCCChHHHHHHHHHHH
Q 036003 298 IVAYATHGQGHKSILMFEEMM 318 (558)
Q Consensus 298 i~~~~~~~~~~~a~~~~~~m~ 318 (558)
+..+....++++|..++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 455555566666666655544
No 310
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=32.71 E-value=1.7e+02 Score=24.34 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=30.5
Q ss_pred HHHHHHH---HCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036003 195 AIITAYA---RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG 239 (558)
Q Consensus 195 ~li~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 239 (558)
-+|+++. +-.+++.|+-.+.+|++.|-.|....=..++.+....|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3555554 45789999999999999887666555555555554444
No 311
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=32.35 E-value=2.1e+02 Score=26.21 Aligned_cols=60 Identities=8% Similarity=0.095 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCCH---HhHHHHHHHHHHCC-ChHHHHHHHHHHHHCCCC
Q 036003 264 TALIDMHAKCGRLDDAVSVFDNMSGKDT---QAWSAMIVAYATHG-QGHKSILMFEEMMKAQVS 323 (558)
Q Consensus 264 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~ 323 (558)
..++.-|...|+.++|.+.++++..|.. .....+..++-+.. .-+.+..++..+.+.|+-
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 4467777788888888888888876531 11222222222211 134455666666666544
No 312
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=30.89 E-value=70 Score=20.61 Aligned_cols=33 Identities=15% Similarity=0.286 Sum_probs=24.5
Q ss_pred chHHHHHHHHhHHCCCCCCcccHHHHHHHH-Hhc
Q 036003 103 PIRAIFLFVELLNSGLLPDDYSFPSLLKAC-ACV 135 (558)
Q Consensus 103 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~ 135 (558)
.++|...|.+|++..-.+...||...++.+ +..
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 468888888887764445668888888888 544
No 313
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=30.84 E-value=47 Score=24.00 Aligned_cols=65 Identities=12% Similarity=0.096 Sum_probs=42.3
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHHHHHHHHhcCCCchHHH
Q 036003 38 KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAI 107 (558)
Q Consensus 38 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 107 (558)
..|.+.+.+.|+ .+..-... |...... .+.+.|.++++.++.....+|..++.++...|+..-|-
T Consensus 24 ~~vld~L~~~~v-lt~~~~e~-I~~~~~~---t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 24 DQLWDVLLSREL-FRPHMIED-IQRAGSG---SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp TTTHHHHHHTTS-SCHHHHHH-HHTSTTC---CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHcCC-CCHHHHHH-HHhccCC---ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 346666666664 23222222 2221122 47889999999999988899999999998777765553
No 314
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=30.83 E-value=2.2e+02 Score=23.93 Aligned_cols=67 Identities=18% Similarity=0.296 Sum_probs=44.2
Q ss_pred hHHHHHHHHH---HCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-----hHHHHHHHHHHHHhCCCC
Q 036003 192 SYNAIITAYA---RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS-----LDLGKWIHEYIKKYGLDK 258 (558)
Q Consensus 192 ~~~~li~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 258 (558)
.+.-+|+++. +-.+++.|+-.+.+|++.|-.|....=..++.+....|. +..|...++.....|.+.
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 108 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPE 108 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 3444566654 458999999999999999877766665666666555553 334555566666666543
No 315
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=30.08 E-value=2.2e+02 Score=23.12 Aligned_cols=79 Identities=13% Similarity=0.100 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036003 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL 237 (558)
Q Consensus 158 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 237 (558)
+..+....+..+.+.++.+....+.+.+..++...-...+.++.+.|..+ +...+..+.. .++...-...+.++.+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 33333344444444444333333444443444444444444444444432 2333333332 2344444444444444
Q ss_pred cCC
Q 036003 238 LGS 240 (558)
Q Consensus 238 ~~~ 240 (558)
.++
T Consensus 103 ~~~ 105 (201)
T 3ltj_A 103 IGD 105 (201)
T ss_dssp HCC
T ss_pred hCc
Confidence 444
No 316
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.85 E-value=1.9e+02 Score=22.52 Aligned_cols=34 Identities=9% Similarity=-0.078 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036003 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274 (558)
Q Consensus 241 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 274 (558)
.-.|.++++.+.+.+...+..|.---++.+...|
T Consensus 37 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 37 HPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp CCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3344444444444433333332222344444444
No 317
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.96 E-value=66 Score=23.20 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=24.9
Q ss_pred CCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHH
Q 036003 274 GRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310 (558)
Q Consensus 274 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 310 (558)
...++|.++++.+..++..+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 3567777777777777777777777777665554443
No 318
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=28.89 E-value=2.2e+02 Score=22.59 Aligned_cols=54 Identities=7% Similarity=0.013 Sum_probs=37.7
Q ss_pred ccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc
Q 036003 206 PNEALSLFRELQERNLKPT-DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259 (558)
Q Consensus 206 ~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 259 (558)
.+++.++|..|...|+--. ...|..-...+...|++.+|..+|+.-++.+-.|-
T Consensus 81 ~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 81 NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3447888888877766443 34566666677777888888888887777766664
No 319
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.58 E-value=4.1e+02 Score=28.60 Aligned_cols=86 Identities=7% Similarity=-0.190 Sum_probs=50.9
Q ss_pred HHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCC-----------------
Q 036003 332 LLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL--PIKS----------------- 392 (558)
Q Consensus 332 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~----------------- 392 (558)
++..|...|.++-+.++.. -++.+...--.+..+|...|++++|...|++. ++..
T Consensus 816 l~~~L~~~~~~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 5556666676665544322 22223333335666777788888888888776 1110
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 036003 393 ------TPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423 (558)
Q Consensus 393 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 423 (558)
....|..++..+-+.+.++.+.++.+.+++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 0124555666677777777777777777754
No 320
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=27.50 E-value=4.2e+02 Score=28.49 Aligned_cols=126 Identities=13% Similarity=0.031 Sum_probs=66.3
Q ss_pred HHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 036003 165 LINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244 (558)
Q Consensus 165 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 244 (558)
++..+...|..+-|.++...+.. +...--.+..+|...|++++|...|++.- .|+..+...... ....
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~----------~~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV----------LREF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------GHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------hhhh
Confidence 55666777788777776666554 33333456777888889999988887753 233221100000 0000
Q ss_pred HHHHHHHHHhC-CCCchhHHHHHHHHHHhcCCHHHHHHHHhccC----CCCH----HhHHHHHHHHHHCC
Q 036003 245 KWIHEYIKKYG-LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS----GKDT----QAWSAMIVAYATHG 305 (558)
Q Consensus 245 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~~ 305 (558)
..++. ... .......|..++..+-+.+.++.+.++-+... ..|. ..|+.+.++.+..|
T Consensus 884 ~~ll~---~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAE---KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHH---HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccC---cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00000 000 01122356667777777777777665544332 2232 35666666665543
No 321
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=27.24 E-value=1.4e+02 Score=29.26 Aligned_cols=71 Identities=10% Similarity=-0.019 Sum_probs=36.0
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHH
Q 036003 369 VDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439 (558)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 439 (558)
.+...-...++.|..+|... ...| +...||.|.-.....|+.-+|.-.|-+.+....+-+.+...|...+.
T Consensus 159 GDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 33333344455566655554 2222 33455555555555555555555555555555444455555554443
No 322
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=26.92 E-value=3.5e+02 Score=26.16 Aligned_cols=106 Identities=10% Similarity=0.065 Sum_probs=60.6
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFR 214 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 214 (558)
.+.+-|.++. .+.|++--...|..-.+.+...|++++|.++--..+. ++..|.+.+-..=..-|+..--+.+|.
T Consensus 343 ~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~ 419 (494)
T 1bpo_A 343 QNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFG 419 (494)
T ss_dssp CCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred CCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 4555555443 3446655555566667777888888888888766654 444444444333334466666777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 036003 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247 (558)
Q Consensus 215 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 247 (558)
.+.+.| +.+..--.-+++.-...|+.+-.+++
T Consensus 420 ~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekW 451 (494)
T 1bpo_A 420 ILLDQG-QLNKYESLELCRPVLQQGRKQLLEKW 451 (494)
T ss_dssp HHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhccC-ccchHHhhHHhHHHHhccHHHHHHHH
Confidence 776665 34444333444444455555444433
No 323
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=26.58 E-value=1.7e+02 Score=20.62 Aligned_cols=62 Identities=13% Similarity=0.002 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccH
Q 036003 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNE 208 (558)
Q Consensus 143 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 208 (558)
...+++.+.+.|+-... -+..+. ......++|..+++.+......+|..++.++.+.+...-
T Consensus 24 v~~lld~L~~~~vlt~~-~~e~I~---~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~L 85 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTIS-EEEKVR---NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDL 85 (94)
T ss_dssp HHHHHHHHHHHTSSCHH-HHHHHH---TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHCCCCCHH-HHHHHH---cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHH
Confidence 34556666666643222 222221 135667788888888887777888888888777765433
No 324
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=26.46 E-value=2.4e+02 Score=22.54 Aligned_cols=53 Identities=8% Similarity=-0.103 Sum_probs=35.0
Q ss_pred HHCCCccHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HhccCChHHHHHHHHHHHH
Q 036003 201 ARSSRPNEALSLFRELQERNLKP--TDVTMLSALS-S-----CALLGSLDLGKWIHEYIKK 253 (558)
Q Consensus 201 ~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~~~ 253 (558)
...|++-+|.++++..-...-.+ +...|..||. . ..+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34488888888888876654444 4456666666 2 2356777777777777654
No 325
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=25.20 E-value=2.4e+02 Score=23.44 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=27.8
Q ss_pred HHHHHHHHh---cCCCchHHHHHHHHhHHCCCCCCcccHHHHHHH
Q 036003 90 FNTMARGYS---RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131 (558)
Q Consensus 90 ~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 131 (558)
+.-+|+++. |-.|++.|+-++.+|++.|-.|....-..++-+
T Consensus 7 HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~A 51 (201)
T 3bge_A 7 FYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIA 51 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 445666665 457899999999999988866654443333333
No 326
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=24.85 E-value=3.1e+02 Score=23.10 Aligned_cols=72 Identities=13% Similarity=0.183 Sum_probs=43.0
Q ss_pred CCcccHHHHHHHHhc---CCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcC---cccHHHHHHHHHHHHHhCCC
Q 036003 85 PDIVLFNTMARGYSR---SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG---AEALEEGKQLHCFAIKLGLN 156 (558)
Q Consensus 85 ~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~~~a~~~~~~~~~~g~~ 156 (558)
.+...+.-+|+++.| -.+++.|+-++.+|++.|-.|....-..++-+.-.-| ..-+..|...++.....|.+
T Consensus 30 k~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 30 KNGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred CCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 344556667777754 5889999999999999887765444444444433221 13344555566666666643
No 327
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=24.27 E-value=2.3e+02 Score=22.15 Aligned_cols=40 Identities=8% Similarity=0.055 Sum_probs=19.6
Q ss_pred HHHHHHhCCCCChh--HHHHHHHHhhcCCCCCCHHHHHHHHccCC
Q 036003 41 HAVTIKTHLQNDLN--VLTKLINFCTQNPTTSSMEHAHLLFDRIP 83 (558)
Q Consensus 41 ~~~~~~~g~~~~~~--~~~~li~~~~~~~~~~~~~~A~~~~~~~~ 83 (558)
...+.+.|..++.. .....+...+.. |+.+-+..+++.-.
T Consensus 30 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~ 71 (169)
T 2y1l_E 30 VRILMANGADVNAEDASGWTPLHLAAFN---GHLEIVEVLLKNGA 71 (169)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHTTC
T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHc---CCHHHHHHHHHcCC
Confidence 33444556544321 112233334445 77777777776543
No 328
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=23.83 E-value=2.8e+02 Score=22.12 Aligned_cols=139 Identities=11% Similarity=0.015 Sum_probs=71.2
Q ss_pred CHHHHHHHHHhccCC-chHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHHHHHHHHh
Q 036003 20 NTPNALSLLPRCTSF-RGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS 98 (558)
Q Consensus 20 ~~~~~~~ll~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~ 98 (558)
....++.++.-|+.. ..-..+...+.+.|++++ .-..+|..+... |-+++..-. ..++....
T Consensus 16 ~~~a~~~Al~~Ls~r~~s~~EL~~KL~~kg~~~e--~Ie~vl~~l~~~---g~ldD~rfA------------~~~v~~~~ 78 (162)
T 3dfg_A 16 EQTPVQRALGLLVHREHSKKELNRKLQARGIEPE--AAQAAVERLAGE---GWQDDVRFA------------ASVVRNRA 78 (162)
T ss_dssp -CCHHHHHHHHHHHSCCCHHHHHHHHHHTTCCHH--HHHHHHHHHHHT---TSCCHHHHH------------HHHHHHHH
T ss_pred HHHHHHHHHHHhhchhhhHHHHHHHHHhcCCCHH--HHHHHHHHHHHc---CCCCHHHHH------------HHHHHHHH
Confidence 345677777777644 344888889988887543 556667777766 544443211 12233333
Q ss_pred cCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC-hHH
Q 036003 99 RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD-VEA 177 (558)
Q Consensus 99 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~-~~~ 177 (558)
+.| .....+-.++...|+..+ +....+..+ .. ...+.|..+++.-.......+.....-++..+.+.|- ++.
T Consensus 79 ~~~--~G~~~I~~eL~~KGI~~~--~I~~al~~~-~~--de~e~a~~l~~Kk~~~~~~~~~~~k~K~~~~L~rrGF~~~~ 151 (162)
T 3dfg_A 79 SSG--YGPLHIRAELGTHGLDSD--AVSAAMATF-EG--DWTENALDLIRRRFGEDGPVDLAQRRKAADLLARRGFDGNS 151 (162)
T ss_dssp TTT--CCHHHHHHHHHHTTCCHH--HHHHHHTTC-CS--CHHHHHHHHHHHHHCTTCCCSHHHHHHHHHHHHHTTCCHHH
T ss_pred Hcc--ccHHHHHHHHHHcCCCHH--HHHHHHHhC-cH--hHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCCHHH
Confidence 322 233566777777887532 222222221 11 2344455555432211112344555666677777764 344
Q ss_pred HHHHH
Q 036003 178 ARRIF 182 (558)
Q Consensus 178 A~~~~ 182 (558)
+..++
T Consensus 152 I~~~l 156 (162)
T 3dfg_A 152 IRLAT 156 (162)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 44444
No 329
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=23.51 E-value=2.4e+02 Score=27.20 Aligned_cols=77 Identities=10% Similarity=0.110 Sum_probs=49.4
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHhH
Q 036003 38 KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVELL 114 (558)
Q Consensus 38 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 114 (558)
.-......+.|++--...|..-.+-+... |++++|.++--..++ ++..+.+.+-..=...|+..--+..|..+.
T Consensus 346 ~lA~~lA~R~~LpGAd~L~~~~F~~l~~~---g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll 422 (494)
T 1bpo_A 346 DLALRMAVRNNLAGAEELFARKFNALFAQ---GNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILL 422 (494)
T ss_dssp HHHHHHHHHTTCSSCHHHHHHHHHHHHHT---TCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHc---CCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHh
Confidence 33344455667777667777777777777 888888888877665 444444444444444566666666676666
Q ss_pred HCC
Q 036003 115 NSG 117 (558)
Q Consensus 115 ~~g 117 (558)
+.|
T Consensus 423 ~~g 425 (494)
T 1bpo_A 423 DQG 425 (494)
T ss_dssp HHS
T ss_pred ccC
Confidence 654
No 330
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=23.25 E-value=76 Score=27.47 Aligned_cols=53 Identities=19% Similarity=-0.051 Sum_probs=27.7
Q ss_pred HHhcCCCchHHHHHHHHhHHCCCCCCcc-------cHHHHHHHHH--hcCcccHHHHHHHHHHH
Q 036003 96 GYSRSKTPIRAIFLFVELLNSGLLPDDY-------SFPSLLKACA--CVGAEALEEGKQLHCFA 150 (558)
Q Consensus 96 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------~~~~ll~~~~--~~~~~~~~~a~~~~~~~ 150 (558)
..++.|+.+....+++.+.+.|..++.. -.+.|..+.. .. |+.+-+..+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~--g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSA--GRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBT--TBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhc--CCHHHHHHHHHhc
Confidence 3455677777666666666655555432 2234443332 33 5555555555443
No 331
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A 1ycn_A 2q4c_A 1dk5_A
Probab=23.05 E-value=4.2e+02 Score=23.97 Aligned_cols=59 Identities=12% Similarity=0.041 Sum_probs=31.2
Q ss_pred cHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q 036003 89 LFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152 (558)
Q Consensus 89 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 152 (558)
.|..++-+++...-...|..+.+.|. |...|..+ ++..++.....++....+.|+.+..
T Consensus 77 ~f~~ll~~l~~~~~~~dA~~l~~A~k--g~Gtde~~---lieIL~tRs~~ql~~i~~~Y~~~~g 135 (321)
T 1n00_A 77 DFERLVLLWALDPAERDALLANEATK--RWTSSNQV---LMEIACTRSANQLLHARQAYHARYK 135 (321)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHS--SSCSSCHH---HHHHHHSSCHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHcCChhHHHHHHHHHHhh--ccCCCHHH---HHHHHhcCCHHHHHHHHHHHHHHhC
Confidence 35556656655433456666666663 44455443 4555554433455555555555443
No 332
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.58 E-value=1.9e+02 Score=22.53 Aligned_cols=63 Identities=8% Similarity=0.002 Sum_probs=40.9
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHH
Q 036003 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379 (558)
Q Consensus 315 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 379 (558)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|.-.-++.+.+.|-+.
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEE
Confidence 346677887776543 3344444556666788888888775 55556666666677777777653
No 333
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=22.57 E-value=3e+02 Score=22.08 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=38.0
Q ss_pred cHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch
Q 036003 207 NEALSLFRELQERNLKPT-DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV 260 (558)
Q Consensus 207 ~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 260 (558)
+.+.++|..|...|+--. ...|..-...+...|++.+|..+|..-++.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 446778888887776443 345666666677778888888888887777766653
No 334
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=22.53 E-value=2.1e+02 Score=27.00 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=7.8
Q ss_pred HHHHHHhHHCCCCCC
Q 036003 107 IFLFVELLNSGLLPD 121 (558)
Q Consensus 107 ~~~~~~m~~~g~~p~ 121 (558)
+++++.+.+.|..|+
T Consensus 27 ~~~v~~Ll~~g~~~~ 41 (437)
T 1n11_A 27 LPIVKNLLQRGASPN 41 (437)
T ss_dssp HHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHcCCCCC
Confidence 445555555555544
No 335
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=22.31 E-value=4.3e+02 Score=23.82 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=31.7
Q ss_pred cHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHH
Q 036003 89 LFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAI 151 (558)
Q Consensus 89 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~ 151 (558)
.|..++-+++..-....|..+.+.|...| .|. ..++..++.....++....+.|+...
T Consensus 73 ~f~~ll~~l~~~~~~~dA~~L~~A~kg~G--tde---~~lieIL~tRs~~ql~~i~~~Y~~~y 130 (315)
T 1dm5_A 73 NYEAAALALLRKPDEFLAEQLHAAMKGLG--TDK---NALIDILCTQSNAQIHAIKAAFKLLY 130 (315)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHSSS--CCH---HHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHccChhHHHHHHHHHHhhcCC--Cch---hhhhhhHhcCCHHHHHHHHHHHHHHh
Confidence 45566666665444456777777775433 343 34555555543345555555555544
No 336
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.20 E-value=3.8e+02 Score=22.78 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=39.8
Q ss_pred ccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc
Q 036003 206 PNEALSLFRELQERNLKPT-DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259 (558)
Q Consensus 206 ~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 259 (558)
.+.+..+|..|...|+--. ...|......+...|++.+|..+|..-++.+-.|-
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4677788888888876543 34566667777778888888888888877776664
No 337
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.03 E-value=3e+02 Score=21.49 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=17.5
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036003 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275 (558)
Q Consensus 238 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 275 (558)
.+..-.|.++++.+.+.+...+..|.---++.+...|-
T Consensus 39 ~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 39 SGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp CSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 33444555555555554444343333334455555544
No 338
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=20.89 E-value=1.1e+02 Score=19.73 Aligned_cols=22 Identities=14% Similarity=0.009 Sum_probs=11.5
Q ss_pred CCCchHHHHHHHHhHHCCCCCC
Q 036003 100 SKTPIRAIFLFVELLNSGLLPD 121 (558)
Q Consensus 100 ~g~~~~A~~~~~~m~~~g~~p~ 121 (558)
.|+.+.|+..+-.|...+..|+
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSCC
T ss_pred CCCHHHHHHHHHcCcCCCCCCC
Confidence 4555555555555554444443
No 339
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=20.47 E-value=4.9e+02 Score=24.10 Aligned_cols=23 Identities=4% Similarity=-0.055 Sum_probs=13.2
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC
Q 036003 366 GCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
..+...+.+....+....+|.+.
T Consensus 142 l~vl~~~~k~~G~~~l~~l~~~s 164 (364)
T 3l6a_A 142 LLCLQQLAKLQDREWLTELFQQS 164 (364)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHc
Confidence 34445555666666666666554
No 340
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.17 E-value=2.5e+02 Score=22.43 Aligned_cols=58 Identities=12% Similarity=-0.011 Sum_probs=26.3
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCC
Q 036003 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY--GLDKYVKVNTALIDMHAKCGR 275 (558)
Q Consensus 217 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 275 (558)
.+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|.---++.+.+.|-
T Consensus 25 ~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 25 RQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 34455544332 23334444444455555566555554 433343332224455555554
Done!