Query 036006
Match_columns 133
No_of_seqs 150 out of 1225
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 08:31:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.2 1.6E-10 3.5E-15 93.2 8.4 108 3-132 610-717 (1153)
2 PLN03210 Resistant to P. syrin 99.1 2.5E-10 5.5E-15 92.1 7.2 117 4-133 778-907 (1153)
3 PF13855 LRR_8: Leucine rich r 98.5 3.6E-07 7.7E-12 49.0 5.4 59 4-70 1-59 (61)
4 PF13855 LRR_8: Leucine rich r 98.4 1.8E-06 4E-11 46.2 5.8 59 32-102 1-59 (61)
5 PF14580 LRR_9: Leucine-rich r 98.4 4.6E-07 9.9E-12 58.8 3.5 33 31-69 41-73 (175)
6 PRK15386 type III secretion pr 98.2 4.2E-06 9.2E-11 60.8 6.3 60 3-77 51-111 (426)
7 PLN00113 leucine-rich repeat r 98.2 2.6E-06 5.7E-11 68.1 5.7 36 31-70 163-198 (968)
8 PF14580 LRR_9: Leucine-rich r 98.2 6.4E-07 1.4E-11 58.1 1.6 107 3-127 41-148 (175)
9 PLN00113 leucine-rich repeat r 98.1 4.4E-06 9.5E-11 66.8 5.4 38 90-130 545-582 (968)
10 KOG4194 Membrane glycoprotein 98.0 1.2E-06 2.6E-11 65.8 -0.5 115 2-130 291-427 (873)
11 KOG4658 Apoptotic ATPase [Sign 98.0 3.6E-06 7.7E-11 66.7 1.8 121 2-132 715-842 (889)
12 KOG4341 F-box protein containi 97.8 3.8E-07 8.2E-12 65.6 -5.3 92 32-132 138-229 (483)
13 KOG1947 Leucine rich repeat pr 97.8 2.8E-06 6.2E-11 62.5 -1.0 40 91-131 268-307 (482)
14 KOG3665 ZYG-1-like serine/thre 97.8 1.3E-05 2.7E-10 62.2 2.3 107 3-127 147-258 (699)
15 KOG3207 Beta-tubulin folding c 97.8 4.4E-06 9.5E-11 60.6 -0.6 64 2-71 170-233 (505)
16 KOG1947 Leucine rich repeat pr 97.7 2.7E-06 5.8E-11 62.6 -1.9 91 30-129 241-331 (482)
17 KOG3665 ZYG-1-like serine/thre 97.6 1.1E-05 2.5E-10 62.4 -0.4 108 5-130 123-231 (699)
18 KOG4341 F-box protein containi 97.6 1.6E-05 3.4E-10 57.5 -0.2 38 92-131 401-438 (483)
19 KOG2120 SCF ubiquitin ligase, 97.3 1.3E-05 2.9E-10 55.9 -2.9 64 58-130 311-374 (419)
20 PRK15386 type III secretion pr 97.3 0.00056 1.2E-08 50.0 5.0 62 31-110 51-112 (426)
21 KOG3864 Uncharacterized conser 97.3 1.5E-05 3.2E-10 52.5 -2.9 68 30-106 123-190 (221)
22 KOG4194 Membrane glycoprotein 97.3 0.00024 5.3E-09 53.9 3.0 58 5-70 174-231 (873)
23 KOG3864 Uncharacterized conser 97.2 3.9E-05 8.5E-10 50.6 -1.8 67 3-75 124-191 (221)
24 KOG0618 Serine/threonine phosp 97.1 8E-05 1.7E-09 58.7 -0.6 39 90-131 450-488 (1081)
25 PF12799 LRR_4: Leucine Rich r 97.1 0.00056 1.2E-08 34.1 2.5 34 4-42 1-34 (44)
26 PRK15370 E3 ubiquitin-protein 97.1 0.0014 3E-08 51.6 5.5 52 5-70 200-251 (754)
27 cd00116 LRR_RI Leucine-rich re 97.1 0.00015 3.2E-09 50.8 0.2 39 91-130 192-232 (319)
28 KOG2120 SCF ubiquitin ligase, 97.0 1.5E-05 3.3E-10 55.6 -5.0 97 32-132 234-351 (419)
29 KOG0444 Cytoskeletal regulator 97.0 7.3E-05 1.6E-09 57.3 -1.9 40 89-132 336-375 (1255)
30 cd00116 LRR_RI Leucine-rich re 97.0 8.1E-05 1.8E-09 52.1 -1.8 13 90-102 219-231 (319)
31 PF12799 LRR_4: Leucine Rich r 96.9 0.0018 3.9E-08 32.2 3.5 39 32-76 1-39 (44)
32 PRK15370 E3 ubiquitin-protein 96.9 0.00076 1.7E-08 53.0 3.2 99 5-129 263-377 (754)
33 PRK15387 E3 ubiquitin-protein 96.9 0.0024 5.3E-08 50.4 5.8 50 5-70 223-272 (788)
34 KOG3207 Beta-tubulin folding c 96.9 0.00033 7.2E-09 51.2 0.6 65 58-126 269-333 (505)
35 PRK15387 E3 ubiquitin-protein 96.8 0.0023 5.1E-08 50.5 4.9 32 3-42 241-272 (788)
36 KOG1644 U2-associated snRNP A' 96.8 0.0042 9.1E-08 41.3 5.2 87 30-128 62-149 (233)
37 KOG1644 U2-associated snRNP A' 96.7 0.0034 7.4E-08 41.7 4.5 88 3-102 63-150 (233)
38 KOG4658 Apoptotic ATPase [Sign 96.7 0.00097 2.1E-08 53.3 2.3 80 31-126 570-649 (889)
39 KOG0617 Ras suppressor protein 96.7 0.00023 4.9E-09 46.3 -1.3 56 3-68 32-87 (264)
40 PLN03150 hypothetical protein; 96.6 0.0045 9.8E-08 47.9 5.3 62 30-103 440-501 (623)
41 KOG0617 Ras suppressor protein 96.5 0.0004 8.6E-09 45.2 -1.1 80 31-128 32-111 (264)
42 PF13306 LRR_5: Leucine rich r 95.9 0.18 3.8E-06 30.4 8.5 100 4-127 12-111 (129)
43 KOG0444 Cytoskeletal regulator 95.8 0.0014 3.1E-08 50.6 -1.3 13 91-103 172-184 (1255)
44 KOG1259 Nischarin, modulator o 95.8 0.0018 3.8E-08 45.8 -0.8 55 5-70 285-339 (490)
45 KOG2982 Uncharacterized conser 95.8 0.0038 8.3E-08 44.0 0.9 116 2-130 95-210 (418)
46 KOG1259 Nischarin, modulator o 95.7 0.0026 5.7E-08 45.0 -0.0 105 3-130 306-410 (490)
47 KOG4237 Extracellular matrix p 95.7 0.0053 1.2E-07 44.7 1.5 65 3-76 273-337 (498)
48 PLN03150 hypothetical protein; 95.6 0.024 5.2E-07 44.0 4.6 62 2-71 440-501 (623)
49 PF13504 LRR_7: Leucine rich r 95.3 0.013 2.9E-07 22.9 1.4 10 93-102 2-11 (17)
50 smart00367 LRR_CC Leucine-rich 95.3 0.012 2.5E-07 25.7 1.3 15 119-133 2-16 (26)
51 KOG0472 Leucine-rich repeat pr 95.3 0.00029 6.4E-09 51.2 -5.9 35 91-130 274-308 (565)
52 KOG0618 Serine/threonine phosp 95.1 0.0011 2.5E-08 52.5 -3.7 104 3-128 358-461 (1081)
53 KOG0472 Leucine-rich repeat pr 94.9 0.0056 1.2E-07 44.9 -0.5 40 87-130 500-539 (565)
54 KOG4237 Extracellular matrix p 94.8 0.012 2.6E-07 43.0 1.0 86 30-130 272-357 (498)
55 KOG2739 Leucine-rich acidic nu 94.8 0.019 4E-07 39.5 1.8 109 3-129 42-153 (260)
56 KOG0531 Protein phosphatase 1, 94.8 0.011 2.3E-07 43.5 0.6 79 3-102 94-172 (414)
57 PF13306 LRR_5: Leucine rich r 94.7 0.28 6E-06 29.5 6.8 94 4-121 35-128 (129)
58 KOG2123 Uncharacterized conser 94.4 0.0013 2.7E-08 46.0 -4.6 60 31-103 40-99 (388)
59 KOG2739 Leucine-rich acidic nu 94.1 0.044 9.4E-07 37.7 2.3 38 91-130 90-127 (260)
60 PF00560 LRR_1: Leucine Rich R 93.2 0.1 2.2E-06 21.7 1.9 14 6-19 2-15 (22)
61 COG4886 Leucine-rich repeat (L 92.9 0.032 7E-07 40.5 0.2 87 4-110 116-203 (394)
62 KOG1909 Ran GTPase-activating 91.6 0.041 9E-07 39.5 -0.5 13 90-102 239-251 (382)
63 KOG2982 Uncharacterized conser 90.9 0.031 6.7E-07 39.6 -1.7 18 58-76 197-214 (418)
64 smart00370 LRR Leucine-rich re 90.6 0.15 3.2E-06 21.9 1.0 19 3-21 1-19 (26)
65 smart00369 LRR_TYP Leucine-ric 90.6 0.15 3.2E-06 21.9 1.0 19 3-21 1-19 (26)
66 KOG2123 Uncharacterized conser 90.0 0.009 2E-07 41.8 -4.8 32 31-68 18-49 (388)
67 COG4886 Leucine-rich repeat (L 89.9 0.16 3.4E-06 36.9 1.2 34 90-128 253-286 (394)
68 KOG1859 Leucine-rich repeat pr 88.2 0.0088 1.9E-07 47.0 -6.4 77 4-101 187-263 (1096)
69 KOG1909 Ran GTPase-activating 85.6 0.06 1.3E-06 38.7 -3.0 122 4-130 185-309 (382)
70 KOG0532 Leucine-rich repeat (L 85.2 0.11 2.5E-06 39.8 -1.9 111 4-130 121-245 (722)
71 KOG0531 Protein phosphatase 1, 84.1 0.47 1E-05 35.0 0.9 57 2-70 116-172 (414)
72 smart00365 LRR_SD22 Leucine-ri 79.8 1.5 3.3E-05 19.1 1.4 17 3-19 1-17 (26)
73 KOG3763 mRNA export factor TAP 78.1 0.62 1.3E-05 35.7 -0.3 65 3-71 217-281 (585)
74 PF13516 LRR_6: Leucine Rich r 75.5 2.1 4.6E-05 17.7 1.2 12 119-130 2-13 (24)
75 PF07725 LRR_3: Leucine Rich R 63.2 3.5 7.5E-05 16.8 0.5 18 5-22 1-18 (20)
76 smart00364 LRR_BAC Leucine-ric 61.2 4.9 0.00011 17.5 0.8 16 4-19 2-17 (26)
77 KOG4579 Leucine-rich repeat (L 60.7 1.1 2.4E-05 28.5 -1.7 11 91-101 99-109 (177)
78 KOG1859 Leucine-rich repeat pr 52.8 3.6 7.7E-05 33.3 -0.6 56 3-69 208-263 (1096)
79 smart00368 LRR_RI Leucine rich 40.1 20 0.00042 15.5 1.1 11 4-14 2-12 (28)
80 PF05725 FNIP: FNIP Repeat; I 21.1 1.2E+02 0.0026 14.5 3.1 8 119-126 34-41 (44)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.15 E-value=1.6e-10 Score=93.16 Aligned_cols=108 Identities=24% Similarity=0.379 Sum_probs=84.6
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
+.+|+.|++.++.++.+|.+.. .+++|+.|+++++..++.++ ... .+++|+.|.+.+|..+..++.
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~-----~l~~Lk~L~Ls~~~~l~~ip---~ls--~l~~Le~L~L~~c~~L~~lp~---- 675 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVH-----SLTGLRNIDLRGSKNLKEIP---DLS--MATNLETLKLSDCSSLVELPS---- 675 (1153)
T ss_pred ccCCcEEECcCccccccccccc-----cCCCCCEEECCCCCCcCcCC---ccc--cCCcccEEEecCCCCccccch----
Confidence 4678888888888888876532 48899999999988888773 345 788999999999988887743
Q ss_pred ccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCCCC
Q 036006 83 KRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCPEF 132 (133)
Q Consensus 83 ~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~~l 132 (133)
.+..+++|+.|++++|.+++.+|... .+++|+.|.+.+|..+
T Consensus 676 ----si~~L~~L~~L~L~~c~~L~~Lp~~i----~l~sL~~L~Lsgc~~L 717 (1153)
T PLN03210 676 ----SIQYLNKLEDLDMSRCENLEILPTGI----NLKSLYRLNLSGCSRL 717 (1153)
T ss_pred ----hhhccCCCCEEeCCCCCCcCccCCcC----CCCCCCEEeCCCCCCc
Confidence 23358889999999999898888653 5688888888888654
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.10 E-value=2.5e-10 Score=92.06 Aligned_cols=117 Identities=23% Similarity=0.299 Sum_probs=83.5
Q ss_pred Cccceeeeccc-eeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc
Q 036006 4 PKLENLELRSI-NVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 4 ~~L~~L~l~~~-~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
++|++|++++| .+..++. ....+++|+.|.+++|.+++.++. .. .+++|+.|.+++|..+..++.....
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~-----si~~L~~L~~L~Ls~C~~L~~LP~---~~--~L~sL~~L~Ls~c~~L~~~p~~~~n 847 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPS-----SIQNLHKLEHLEIENCINLETLPT---GI--NLESLESLDLSGCSRLRTFPDISTN 847 (1153)
T ss_pred ccchheeCCCCCCccccCh-----hhhCCCCCCEEECCCCCCcCeeCC---CC--CccccCEEECCCCCccccccccccc
Confidence 46777777777 5554422 223588999999999998888842 23 6788999999998877655321110
Q ss_pred ------------ccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCCCCC
Q 036006 83 ------------KRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCPEFM 133 (133)
Q Consensus 83 ------------~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~~l~ 133 (133)
.-+..+..+++|+.|++.+|++|+.++... ..+++|+.+.+.+|++|+
T Consensus 848 L~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~---~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 848 ISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNI---SKLKHLETVDFSDCGALT 907 (1153)
T ss_pred cCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccc---ccccCCCeeecCCCcccc
Confidence 112334568899999999999999988754 267999999999998763
No 3
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.53 E-value=3.6e-07 Score=49.03 Aligned_cols=59 Identities=27% Similarity=0.355 Sum_probs=30.8
Q ss_pred CccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCC
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGC 70 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c 70 (133)
|+|++|++.+++++.+..+.+. .+++|++|++++ .+++.+++ ..+. ++++|+.|+++++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~----~l~~L~~L~l~~-N~l~~i~~-~~f~--~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFS----NLPNLETLDLSN-NNLTSIPP-DAFS--NLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTT----TGTTESEEEETS-SSESEEET-TTTT--TSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHc----CCCCCCEeEccC-CccCccCH-HHHc--CCCCCCEEeCcCC
Confidence 4556666666655555433332 355666666653 34555532 2333 5556666655554
No 4
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=1.8e-06 Score=46.21 Aligned_cols=59 Identities=24% Similarity=0.264 Sum_probs=29.3
Q ss_pred CCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeeccc
Q 036006 32 QNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDL 102 (133)
Q Consensus 32 ~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c 102 (133)
|+|++|.++++ +++.+++ ..+. ++++|++|+++++. ++.+... ....+++|++|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~-~~f~--~l~~L~~L~l~~N~-l~~i~~~-------~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPP-DSFS--NLPNLETLDLSNNN-LTSIPPD-------AFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECT-TTTT--TGTTESEEEETSSS-ESEEETT-------TTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCH-HHHc--CCCCCCEeEccCCc-cCccCHH-------HHcCCCCCCEEeCcCC
Confidence 35566666664 5555532 2334 55666666666443 5544321 1113555555555544
No 5
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.35 E-value=4.6e-07 Score=58.77 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=7.7
Q ss_pred CCCccEEEEecCCCcceeccCccccccccCcccEEEEeC
Q 036006 31 VQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWG 69 (133)
Q Consensus 31 l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~ 69 (133)
+.+|+.|+++++ .++.+ ..+. .+++|+.|++++
T Consensus 41 l~~L~~L~Ls~N-~I~~l---~~l~--~L~~L~~L~L~~ 73 (175)
T PF14580_consen 41 LDKLEVLDLSNN-QITKL---EGLP--GLPRLKTLDLSN 73 (175)
T ss_dssp -TT--EEE-TTS---S-----TT------TT--EEE--S
T ss_pred hcCCCEEECCCC-CCccc---cCcc--ChhhhhhcccCC
Confidence 445555555543 34443 1222 444555555444
No 6
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.22 E-value=4.2e-06 Score=60.83 Aligned_cols=60 Identities=22% Similarity=0.352 Sum_probs=44.5
Q ss_pred CCccceeeeccceeeeecccccccccccC-CCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGV-QNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEII 77 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l-~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~ 77 (133)
.+++++|++++|.++.++ .+ ++|+.|.+++|.+++.++. . ..++|+.|.+.+|.++..++
T Consensus 51 ~~~l~~L~Is~c~L~sLP---------~LP~sLtsL~Lsnc~nLtsLP~--~----LP~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP---------VLPNELTEITIENCNNLTTLPG--S----IPEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCCCCcccC---------CCCCCCcEEEccCCCCcccCCc--h----hhhhhhheEccCcccccccc
Confidence 467889999998777663 14 4799999999999877741 1 23589999999987776553
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.22 E-value=2.6e-06 Score=68.08 Aligned_cols=36 Identities=17% Similarity=0.050 Sum_probs=16.7
Q ss_pred CCCccEEEEecCCCcceeccCccccccccCcccEEEEeCC
Q 036006 31 VQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGC 70 (133)
Q Consensus 31 l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c 70 (133)
+++|++|+++++.-...++ .... .+++|++|++.++
T Consensus 163 l~~L~~L~L~~n~l~~~~p--~~~~--~l~~L~~L~L~~n 198 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIP--NSLT--NLTSLEFLTLASN 198 (968)
T ss_pred CCCCCEEECccCcccccCC--hhhh--hCcCCCeeeccCC
Confidence 4555555555543222221 1223 4556666665554
No 8
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.20 E-value=6.4e-07 Score=58.10 Aligned_cols=107 Identities=21% Similarity=0.243 Sum_probs=44.3
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
+.+|+.|+++++.++.+. +.+ .+++|+.|.+++ ..++.+.. .... .+|+|+.|++++.. +.++...
T Consensus 41 l~~L~~L~Ls~N~I~~l~--~l~----~L~~L~~L~L~~-N~I~~i~~-~l~~--~lp~L~~L~L~~N~-I~~l~~l--- 106 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLE--GLP----GLPRLKTLDLSN-NRISSISE-GLDK--NLPNLQELYLSNNK-ISDLNEL--- 106 (175)
T ss_dssp -TT--EEE-TTS--S--T--T--------TT--EEE--S-S---S-CH-HHHH--H-TT--EEE-TTS----SCCCC---
T ss_pred hcCCCEEECCCCCCcccc--Ccc----ChhhhhhcccCC-CCCCcccc-chHH--hCCcCCEEECcCCc-CCChHHh---
Confidence 568899999999888762 222 589999999987 67777732 2234 68999999998653 4443211
Q ss_pred ccccccccCCCccEEeecccccccccccCc-ccccCCCCccEEEEc
Q 036006 83 KRNNNIVMFPQLQYLKMYDLKKLTSFCTRD-VHIIKFPSLRKLWIS 127 (133)
Q Consensus 83 ~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~-~~~~~~~~L~~L~i~ 127 (133)
..+..+|+|+.|++.+.|= ....... .-...+|+|+.|+-.
T Consensus 107 ---~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 107 ---EPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp ---GGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTE
T ss_pred ---HHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCE
Confidence 1233599999999998873 3222211 001367888888644
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.14 E-value=4.4e-06 Score=66.82 Aligned_cols=38 Identities=18% Similarity=0.054 Sum_probs=25.0
Q ss_pred cCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 90 MFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 90 ~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
.+++|+.|+++++.-...+|... ..+++|+++++.+|+
T Consensus 545 ~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 545 EMPVLSQLDLSQNQLSGEIPKNL---GNVESLVQVNISHNH 582 (968)
T ss_pred CcccCCEEECCCCcccccCChhH---hcCcccCEEeccCCc
Confidence 46778888887775444455432 256778888887765
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.97 E-value=1.2e-06 Score=65.79 Aligned_cols=115 Identities=22% Similarity=0.193 Sum_probs=71.7
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCcccc----------------------cccc
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILS----------------------NSIF 59 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~----------------------~~~l 59 (133)
.+.+|+.|+++.+.+..+..+.+. ..++|+.|+++. +.++.+.+. .+. ..++
T Consensus 291 gLt~L~~L~lS~NaI~rih~d~Ws----ftqkL~~LdLs~-N~i~~l~~~-sf~~L~~Le~LnLs~Nsi~~l~e~af~~l 364 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIHIDSWS----FTQKLKELDLSS-NRITRLDEG-SFRVLSQLEELNLSHNSIDHLAEGAFVGL 364 (873)
T ss_pred ccchhhhhccchhhhheeecchhh----hcccceeEeccc-cccccCChh-HHHHHHHhhhhcccccchHHHHhhHHHHh
Confidence 466778888887777666444333 457778877776 456655331 111 0144
Q ss_pred CcccEEEEeCCCCceEEccccccccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 60 VRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 60 ~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
.+|++|+++.-. +...+.+ + ......+++|+.|.+.+. +++.++..++ .+++.||+|++.+.+
T Consensus 365 ssL~~LdLr~N~-ls~~IED-a---a~~f~gl~~LrkL~l~gN-qlk~I~krAf--sgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 365 SSLHKLDLRSNE-LSWCIED-A---AVAFNGLPSLRKLRLTGN-QLKSIPKRAF--SGLEALEHLDLGDNA 427 (873)
T ss_pred hhhhhhcCcCCe-EEEEEec-c---hhhhccchhhhheeecCc-eeeecchhhh--ccCcccceecCCCCc
Confidence 556666555432 3322221 1 112224889999999987 7999998876 589999999987654
No 11
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.96 E-value=3.6e-06 Score=66.69 Aligned_cols=121 Identities=26% Similarity=0.421 Sum_probs=82.3
Q ss_pred CCCccceeeeccceeeee---cccccccccc-cCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEc
Q 036006 2 ALPKLENLELRSINVERI---WQNQVSALSC-GVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEII 77 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~---~~~~~~~~~~-~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~ 77 (133)
.+.+|+.|.+.+|+..+. |..... .. .|+++..+.+.+|...+.. .+.. ..|+|+.|.+..|..++.+.
T Consensus 715 ~l~~L~~L~i~~~~~~e~~~~~~~~~~--~~~~f~~l~~~~~~~~~~~r~l---~~~~--f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 715 SLGNLEELSILDCGISEIVIEWEESLI--VLLCFPNLSKVSILNCHMLRDL---TWLL--FAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred cccCcceEEEEcCCCchhhcccccccc--hhhhHHHHHHHHhhcccccccc---chhh--ccCcccEEEEecccccccCC
Confidence 467899999999944332 211111 11 2778888888888888887 4444 66899999999999888875
Q ss_pred ccccccc-c-cccccCCCccEE-eecccccccccccCcccccCCCCccEEEEccCCCC
Q 036006 78 IVDQEKR-N-NNIVMFPQLQYL-KMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCPEF 132 (133)
Q Consensus 78 ~~~~~~~-~-~~~~~~~~L~~L-~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~~l 132 (133)
....... . ..+..|.++..+ .+.+.+.+..+....+ .++.|+.+.+..||++
T Consensus 788 ~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l---~~~~l~~~~ve~~p~l 842 (889)
T KOG4658|consen 788 PKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPL---SFLKLEELIVEECPKL 842 (889)
T ss_pred CHHHHhhhcccEEecccccccceeeecCCCCceeEeccc---CccchhheehhcCccc
Confidence 4433211 1 123467777777 5777777777776654 4566888888888875
No 12
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.81 E-value=3.8e-07 Score=65.62 Aligned_cols=92 Identities=20% Similarity=0.317 Sum_probs=45.4
Q ss_pred CCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeecccccccccccC
Q 036006 32 QNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFCTR 111 (133)
Q Consensus 32 ~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~ 111 (133)
..||.|.+++|..+.+-....... .+|+++.|.+.+|.++++...... ...+++|+.+.+..|+++++....
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~--~CpnIehL~l~gc~~iTd~s~~sl------a~~C~~l~~l~L~~c~~iT~~~Lk 209 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFAS--NCPNIEHLALYGCKKITDSSLLSL------ARYCRKLRHLNLHSCSSITDVSLK 209 (483)
T ss_pred cccccccccccccCCcchhhHHhh--hCCchhhhhhhcceeccHHHHHHH------HHhcchhhhhhhcccchhHHHHHH
Confidence 355666666666555543222333 566666666666654443211110 013555666666666555554432
Q ss_pred cccccCCCCccEEEEccCCCC
Q 036006 112 DVHIIKFPSLRKLWISRCPEF 132 (133)
Q Consensus 112 ~~~~~~~~~L~~L~i~~c~~l 132 (133)
.+ +.+|++|++|.++-||.+
T Consensus 210 ~l-a~gC~kL~~lNlSwc~qi 229 (483)
T KOG4341|consen 210 YL-AEGCRKLKYLNLSWCPQI 229 (483)
T ss_pred HH-HHhhhhHHHhhhccCchh
Confidence 22 125556666665555543
No 13
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.80 E-value=2.8e-06 Score=62.47 Aligned_cols=40 Identities=30% Similarity=0.416 Sum_probs=20.8
Q ss_pred CCCccEEeecccccccccccCcccccCCCCccEEEEccCCC
Q 036006 91 FPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCPE 131 (133)
Q Consensus 91 ~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~~ 131 (133)
+++|+.|.+.+|+.+++.....+ ...+++|++|++.+|..
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i-~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSI-AERCPSLRELDLSGCHG 307 (482)
T ss_pred CCCcceEccCCCCccchhHHHHH-HHhcCcccEEeeecCcc
Confidence 55566666555655444333222 23556666666665554
No 14
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.79 E-value=1.3e-05 Score=62.18 Aligned_cols=107 Identities=23% Similarity=0.184 Sum_probs=50.1
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
||+|++|.+.+-.+..-+ +.....+||||..|+|+++ +++.+ ...+ .+++|+.|.+.+.+ ++....
T Consensus 147 LPsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~T-nI~nl---~GIS--~LknLq~L~mrnLe-~e~~~~---- 212 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISGT-NISNL---SGIS--RLKNLQVLSMRNLE-FESYQD---- 212 (699)
T ss_pred CcccceEEecCceecchh---HHHHhhccCccceeecCCC-CccCc---HHHh--ccccHHHHhccCCC-CCchhh----
Confidence 556666666554222111 1112224666666666664 44444 1222 56666666665553 222110
Q ss_pred ccccccccCCCccEEeeccccccccc-----ccCcccccCCCCccEEEEc
Q 036006 83 KRNNNIVMFPQLQYLKMYDLKKLTSF-----CTRDVHIIKFPSLRKLWIS 127 (133)
Q Consensus 83 ~~~~~~~~~~~L~~L~i~~c~~L~~l-----~~~~~~~~~~~~L~~L~i~ 127 (133)
-..+-.+.+|+.|+++.-.+..+- +... ...+|+|+.|+.+
T Consensus 213 --l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec--~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 213 --LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLEC--GMVLPELRFLDCS 258 (699)
T ss_pred --HHHHhcccCCCeeeccccccccchHHHHHHHHh--cccCccccEEecC
Confidence 001224667777777655443221 1111 1246777777665
No 15
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=4.4e-06 Score=60.60 Aligned_cols=64 Identities=28% Similarity=0.302 Sum_probs=40.9
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCC
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCP 71 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~ 71 (133)
.||+|+.|.++.+.+...|..... ..++.|+.|.++.|. ++.-.....+. .||+|+.|.+..-.
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~---~~l~~lK~L~l~~CG-ls~k~V~~~~~--~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTT---LLLSHLKQLVLNSCG-LSWKDVQWILL--TFPSLEVLYLEANE 233 (505)
T ss_pred hcccchhcccccccccCCccccch---hhhhhhheEEeccCC-CCHHHHHHHHH--hCCcHHHhhhhccc
Confidence 478888888888866665554433 247888888888884 33221112333 77888888776653
No 16
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.75 E-value=2.7e-06 Score=62.60 Aligned_cols=91 Identities=22% Similarity=0.225 Sum_probs=46.0
Q ss_pred cCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeecccccccccc
Q 036006 30 GVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFC 109 (133)
Q Consensus 30 ~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~ 109 (133)
.+++|+.|.+.+|..+++..-..... .+++|+.|.+..|..+..-.... -...+++|++|++++|..+++..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~--~c~~L~~L~l~~c~~lt~~gl~~------i~~~~~~L~~L~l~~c~~~~d~~ 312 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALAS--RCPNLETLSLSNCSNLTDEGLVS------IAERCPSLRELDLSGCHGLTDSG 312 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHh--hCCCcceEccCCCCccchhHHHH------HHHhcCcccEEeeecCccchHHH
Confidence 34666666666666555543222222 46677777766676533221111 11136677777777776654432
Q ss_pred cCcccccCCCCccEEEEccC
Q 036006 110 TRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 110 ~~~~~~~~~~~L~~L~i~~c 129 (133)
.... ...+++++.+.+..+
T Consensus 313 l~~~-~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 313 LEAL-LKNCPNLRELKLLSL 331 (482)
T ss_pred HHHH-HHhCcchhhhhhhhc
Confidence 2221 124555555544333
No 17
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.60 E-value=1.1e-05 Score=62.44 Aligned_cols=108 Identities=23% Similarity=0.267 Sum_probs=65.6
Q ss_pred ccceeeeccc-eeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccc
Q 036006 5 KLENLELRSI-NVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEK 83 (133)
Q Consensus 5 ~L~~L~l~~~-~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 83 (133)
+|++|++++- .+..-|.... +..||+|+.|.+.+-.-..+-+ ....+ .||+|..|+|+++. +..+.
T Consensus 123 nL~~LdI~G~~~~s~~W~~ki---g~~LPsL~sL~i~~~~~~~~dF-~~lc~--sFpNL~sLDIS~Tn-I~nl~------ 189 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKI---GTMLPSLRSLVISGRQFDNDDF-SQLCA--SFPNLRSLDISGTN-ISNLS------ 189 (699)
T ss_pred hhhhcCccccchhhccHHHHH---hhhCcccceEEecCceecchhH-HHHhh--ccCccceeecCCCC-ccCcH------
Confidence 6778888776 5544443322 2358999999888743212211 12334 88999999998884 55552
Q ss_pred cccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 84 RNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 84 ~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
++..+.+|+.|.+.+.+--.......+ ..+.+|+.|+|++=.
T Consensus 190 ---GIS~LknLq~L~mrnLe~e~~~~l~~L--F~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 190 ---GISRLKNLQVLSMRNLEFESYQDLIDL--FNLKKLRVLDISRDK 231 (699)
T ss_pred ---HHhccccHHHHhccCCCCCchhhHHHH--hcccCCCeeeccccc
Confidence 122578888888876642221111112 377999999987643
No 18
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.56 E-value=1.6e-05 Score=57.53 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=18.8
Q ss_pred CCccEEeecccccccccccCcccccCCCCccEEEEccCCC
Q 036006 92 PQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCPE 131 (133)
Q Consensus 92 ~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~~ 131 (133)
..|..+.+.+||.+++-....+ ..+++|+.+++.+|..
T Consensus 401 ~~l~~lEL~n~p~i~d~~Le~l--~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 401 EGLEVLELDNCPLITDATLEHL--SICRNLERIELIDCQD 438 (483)
T ss_pred cccceeeecCCCCchHHHHHHH--hhCcccceeeeechhh
Confidence 3455555555555444333222 2455666666555543
No 19
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=1.3e-05 Score=55.90 Aligned_cols=64 Identities=20% Similarity=0.184 Sum_probs=36.0
Q ss_pred ccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 58 IFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 58 ~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
.+|+|..|++++|..++.-.+.+ +.-|+.|++|.++.|-.+. |...+...+.|+|.+|++.+|-
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~-------~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQE-------FFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hCCceeeeccccccccCchHHHH-------HHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEecccc
Confidence 66777777777776655422111 1247777777777774432 1111111255777777777663
No 20
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.28 E-value=0.00056 Score=50.05 Aligned_cols=62 Identities=15% Similarity=0.213 Sum_probs=47.5
Q ss_pred CCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeeccccccccccc
Q 036006 31 VQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFCT 110 (133)
Q Consensus 31 l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~ 110 (133)
+.+++.|.|++| +++.++ . .-++|+.|.+.+|.+++.++.. ..++|+.|.+.+|+++..+|.
T Consensus 51 ~~~l~~L~Is~c-~L~sLP---~----LP~sLtsL~Lsnc~nLtsLP~~----------LP~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP---V----LPNELTEITIENCNNLTTLPGS----------IPEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred hcCCCEEEeCCC-CCcccC---C----CCCCCcEEEccCCCCcccCCch----------hhhhhhheEccCccccccccc
Confidence 689999999999 788873 1 2257999999999998776421 235799999999987776653
No 21
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=1.5e-05 Score=52.54 Aligned_cols=68 Identities=21% Similarity=0.387 Sum_probs=39.9
Q ss_pred cCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeeccccccc
Q 036006 30 GVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLT 106 (133)
Q Consensus 30 ~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~ 106 (133)
.++.++.|++.+|..+.+..-..+.+ ..++|+.|+++.|+.+++-. -..+..|++|+.|.+.+.+...
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~--~~~~L~~L~lsgC~rIT~~G-------L~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGG--LAPSLQDLDLSGCPRITDGG-------LACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcc--cccchheeeccCCCeechhH-------HHHHHHhhhhHHHHhcCchhhh
Confidence 35566666777777666654434444 56777777777777665431 1112246677777776665443
No 22
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.27 E-value=0.00024 Score=53.91 Aligned_cols=58 Identities=16% Similarity=0.281 Sum_probs=32.1
Q ss_pred ccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCC
Q 036006 5 KLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGC 70 (133)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c 70 (133)
++++|+++++.++.+..+.+. .|.+|..|.++. +.++.+++ ..+. .+|+|+.|.+..-
T Consensus 174 ni~~L~La~N~It~l~~~~F~----~lnsL~tlkLsr-NrittLp~-r~Fk--~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFD----SLNSLLTLKLSR-NRITTLPQ-RSFK--RLPKLESLDLNRN 231 (873)
T ss_pred CceEEeecccccccccccccc----ccchheeeeccc-CcccccCH-HHhh--hcchhhhhhcccc
Confidence 455555555555555433333 345666666665 45666643 2344 6777777777643
No 23
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=3.9e-05 Score=50.58 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=48.8
Q ss_pred CCccceeeeccc-eeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceE
Q 036006 3 LPKLENLELRSI-NVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEE 75 (133)
Q Consensus 3 l~~L~~L~l~~~-~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~ 75 (133)
++.++.|.+.+| .+.++.-+... ..+++|+.|+|++|+.+++-+- ..+. .+++|+.|++.+.+....
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~---~~~~~L~~L~lsgC~rIT~~GL-~~L~--~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLG---GLAPSLQDLDLSGCPRITDGGL-ACLL--KLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred cchhhhheeccccchhhHHHHHhc---ccccchheeeccCCCeechhHH-HHHH--HhhhhHHHHhcCchhhhc
Confidence 466777888888 66655333222 2489999999999999998632 2334 899999999999875544
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.14 E-value=8e-05 Score=58.68 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=21.4
Q ss_pred cCCCccEEeecccccccccccCcccccCCCCccEEEEccCCC
Q 036006 90 MFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCPE 131 (133)
Q Consensus 90 ~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~~ 131 (133)
.++.|+.++++ |-+|+....... .-.|+|++|++++.++
T Consensus 450 ~l~qL~~lDlS-~N~L~~~~l~~~--~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 450 QLPQLKVLDLS-CNNLSEVTLPEA--LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hcCcceEEecc-cchhhhhhhhhh--CCCcccceeeccCCcc
Confidence 35567777763 445555432211 1237777777777654
No 25
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.11 E-value=0.00056 Score=34.11 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=15.1
Q ss_pred CccceeeeccceeeeecccccccccccCCCccEEEEecC
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKC 42 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c 42 (133)
++|++|++++++++.+... ...+++|+.|+++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~-----l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPE-----LSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSSS-SSHGGH-----GTTCTTSSEEEETSS
T ss_pred CcceEEEccCCCCcccCch-----HhCCCCCCEEEecCC
Confidence 3455555555555544221 113555555555554
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.07 E-value=0.0014 Score=51.62 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=26.2
Q ss_pred ccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCC
Q 036006 5 KLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGC 70 (133)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c 70 (133)
+|+.|++.+++++.++.. .+++|+.|+++++ +++.++. . ..++|+.|.++++
T Consensus 200 ~L~~L~Ls~N~LtsLP~~-------l~~nL~~L~Ls~N-~LtsLP~----~--l~~~L~~L~Ls~N 251 (754)
T PRK15370 200 QITTLILDNNELKSLPEN-------LQGNIKTLYANSN-QLTSIPA----T--LPDTIQEMELSIN 251 (754)
T ss_pred CCcEEEecCCCCCcCChh-------hccCCCEEECCCC-ccccCCh----h--hhccccEEECcCC
Confidence 455666655555544221 1346666666654 4554421 1 2235666666555
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.06 E-value=0.00015 Score=50.81 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=20.1
Q ss_pred CCCccEEeecccccccccccCcc--cccCCCCccEEEEccCC
Q 036006 91 FPQLQYLKMYDLKKLTSFCTRDV--HIIKFPSLRKLWISRCP 130 (133)
Q Consensus 91 ~~~L~~L~i~~c~~L~~l~~~~~--~~~~~~~L~~L~i~~c~ 130 (133)
+++|+.|++++|. +.......+ ....+++|++|++.+|+
T Consensus 192 ~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 192 NCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred CCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 3467777776662 322111000 01246778888777764
No 28
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=1.5e-05 Score=55.64 Aligned_cols=97 Identities=27% Similarity=0.403 Sum_probs=59.2
Q ss_pred CCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccc------ccc-----cc------cc---c-ccc
Q 036006 32 QNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIV------DQE-----KR------NN---N-IVM 90 (133)
Q Consensus 32 ~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~------~~~-----~~------~~---~-~~~ 90 (133)
.+|+.|+++.|..++......++. .+..|..|++++|.--.+...- +.. .| .. . ..-
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~--scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~r 311 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLS--SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRR 311 (419)
T ss_pred ccceeeccccccccchhHHHHHHH--hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence 577888888887777664333444 6777778888777543322100 000 00 00 0 013
Q ss_pred CCCccEEeecccccccccccCcccccCCCCccEEEEccCCCC
Q 036006 91 FPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCPEF 132 (133)
Q Consensus 91 ~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~~l 132 (133)
+|+|..|++++|..|+.-+...+ ..|+.|++|.+..|..+
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~~--~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQEF--FKFNYLQHLSLSRCYDI 351 (419)
T ss_pred CCceeeeccccccccCchHHHHH--HhcchheeeehhhhcCC
Confidence 67888888888877776443333 37889999999888754
No 29
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.00 E-value=7.3e-05 Score=57.30 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=29.8
Q ss_pred ccCCCccEEeecccccccccccCcccccCCCCccEEEEccCCCC
Q 036006 89 VMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCPEF 132 (133)
Q Consensus 89 ~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~~l 132 (133)
--+++|+.|.+ +|..|..+|+..- .++.|+.|++...|+|
T Consensus 336 cRC~kL~kL~L-~~NrLiTLPeaIH---lL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 336 CRCVKLQKLKL-DHNRLITLPEAIH---LLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhHHHHHhcc-cccceeechhhhh---hcCCcceeeccCCcCc
Confidence 34678888888 4556778887652 6788899998888876
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.97 E-value=8.1e-05 Score=52.13 Aligned_cols=13 Identities=23% Similarity=0.261 Sum_probs=8.7
Q ss_pred cCCCccEEeeccc
Q 036006 90 MFPQLQYLKMYDL 102 (133)
Q Consensus 90 ~~~~L~~L~i~~c 102 (133)
.+++|+.|+++++
T Consensus 219 ~~~~L~~L~ls~n 231 (319)
T cd00116 219 SLKSLEVLNLGDN 231 (319)
T ss_pred ccCCCCEEecCCC
Confidence 3566777777765
No 31
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.95 E-value=0.0018 Score=32.23 Aligned_cols=39 Identities=28% Similarity=0.341 Sum_probs=24.5
Q ss_pred CCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEE
Q 036006 32 QNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEI 76 (133)
Q Consensus 32 ~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i 76 (133)
++|++|++++. +++++++ .++ .+++|+.|++++++ ++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~--~l~--~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPP--ELS--NLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SSHGG--HGT--TCTTSSEEEETSSC-CSBE
T ss_pred CcceEEEccCC-CCcccCc--hHh--CCCCCCEEEecCCC-CCCC
Confidence 46778888775 6666632 245 77788888887774 5554
No 32
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.95 E-value=0.00076 Score=53.04 Aligned_cols=99 Identities=23% Similarity=0.261 Sum_probs=52.3
Q ss_pred ccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCcccc----------------ccccCcccEEEEe
Q 036006 5 KLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILS----------------NSIFVRLQHLEIW 68 (133)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~----------------~~~l~~L~~L~i~ 68 (133)
+|+.|+++++++..++.. ..++|+.|.++++ +++.++.. ... ....++|+.|.+.
T Consensus 263 ~L~~L~Ls~N~L~~LP~~-------l~~sL~~L~Ls~N-~Lt~LP~~-lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls 333 (754)
T PRK15370 263 ALQSLDLFHNKISCLPEN-------LPEELRYLSVYDN-SIRTLPAH-LPSGITHLNVQSNSLTALPETLPPGLKTLEAG 333 (754)
T ss_pred CCCEEECcCCccCccccc-------cCCCCcEEECCCC-ccccCccc-chhhHHHHHhcCCccccCCccccccceecccc
Confidence 678888877766655321 1346777777765 45544210 000 0022355555555
Q ss_pred CCCCceEEccccccccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccC
Q 036006 69 GCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 69 ~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c 129 (133)
+|. ++.++. . ..++|+.|+++++ +++.+|... .++|++|++.+|
T Consensus 334 ~N~-Lt~LP~--------~--l~~sL~~L~Ls~N-~L~~LP~~l-----p~~L~~LdLs~N 377 (754)
T PRK15370 334 ENA-LTSLPA--------S--LPPELQVLDVSKN-QITVLPETL-----PPTITTLDVSRN 377 (754)
T ss_pred CCc-cccCCh--------h--hcCcccEEECCCC-CCCcCChhh-----cCCcCEEECCCC
Confidence 553 333321 0 1356777777766 455555432 256777777665
No 33
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.93 E-value=0.0024 Score=50.40 Aligned_cols=50 Identities=18% Similarity=0.124 Sum_probs=27.0
Q ss_pred ccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCC
Q 036006 5 KLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGC 70 (133)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c 70 (133)
+|+.|.+.+++++.++. ..++|++|.++++ +++.++. ..++|+.|.+..+
T Consensus 223 ~L~~L~L~~N~Lt~LP~--------lp~~Lk~LdLs~N-~LtsLP~-------lp~sL~~L~Ls~N 272 (788)
T PRK15387 223 HITTLVIPDNNLTSLPA--------LPPELRTLEVSGN-QLTSLPV-------LPPGLLELSIFSN 272 (788)
T ss_pred CCCEEEccCCcCCCCCC--------CCCCCcEEEecCC-ccCcccC-------cccccceeeccCC
Confidence 45555555555554421 2467788887764 6666531 2245555555544
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.00033 Score=51.19 Aligned_cols=65 Identities=22% Similarity=0.394 Sum_probs=34.0
Q ss_pred ccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeecccccccccccCcccccCCCCccEEEE
Q 036006 58 IFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWI 126 (133)
Q Consensus 58 ~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i 126 (133)
.||.|..|.+..|. +.++..-+... ......||+|++|++... ++++++... ....+++|+.|.+
T Consensus 269 ~l~~L~~Lnls~tg-i~si~~~d~~s-~~kt~~f~kL~~L~i~~N-~I~~w~sl~-~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTG-IASIAEPDVES-LDKTHTFPKLEYLNISEN-NIRDWRSLN-HLRTLENLKHLRI 333 (505)
T ss_pred cccchhhhhccccC-cchhcCCCccc-hhhhcccccceeeecccC-ccccccccc-hhhccchhhhhhc
Confidence 67777777777663 55553222211 112336888888888765 344443321 0124455555553
No 35
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.82 E-value=0.0023 Score=50.51 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=21.5
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecC
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKC 42 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c 42 (133)
.++|++|++++++++.++. ..++|+.|.+.++
T Consensus 241 p~~Lk~LdLs~N~LtsLP~--------lp~sL~~L~Ls~N 272 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPV--------LPPGLLELSIFSN 272 (788)
T ss_pred CCCCcEEEecCCccCcccC--------cccccceeeccCC
Confidence 4789999999988887642 1345566655553
No 36
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.80 E-value=0.0042 Score=41.32 Aligned_cols=87 Identities=20% Similarity=0.253 Sum_probs=50.2
Q ss_pred cCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeecccccccccc
Q 036006 30 GVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFC 109 (133)
Q Consensus 30 ~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~ 109 (133)
.+++|..|.+.+ +.++.+.+ .... .+|+|+.|.+.+-. +.++...+ +...+|+|++|.+.+.|- +.-.
T Consensus 62 ~l~rL~tLll~n-NrIt~I~p-~L~~--~~p~l~~L~LtnNs-i~~l~dl~------pLa~~p~L~~Ltll~Npv-~~k~ 129 (233)
T KOG1644|consen 62 HLPRLHTLLLNN-NRITRIDP-DLDT--FLPNLKTLILTNNS-IQELGDLD------PLASCPKLEYLTLLGNPV-EHKK 129 (233)
T ss_pred CccccceEEecC-Ccceeecc-chhh--hccccceEEecCcc-hhhhhhcc------hhccCCccceeeecCCch-hccc
Confidence 466777777766 57777743 3445 67888888887643 44442222 222578888888876642 2111
Q ss_pred cCc-ccccCCCCccEEEEcc
Q 036006 110 TRD-VHIIKFPSLRKLWISR 128 (133)
Q Consensus 110 ~~~-~~~~~~~~L~~L~i~~ 128 (133)
... +-...+|+|+.|++.+
T Consensus 130 ~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 130 NYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CceeEEEEecCcceEeehhh
Confidence 110 0012568888877654
No 37
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.74 E-value=0.0034 Score=41.73 Aligned_cols=88 Identities=25% Similarity=0.299 Sum_probs=56.5
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
++.|..|.+.++.++.+-+.-.+ .+|+|+.|.+.+ .+++.++.-..++ .+|.|+.|.+-+-+ ++.-. .
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~----~~p~l~~L~Ltn-Nsi~~l~dl~pLa--~~p~L~~Ltll~Np-v~~k~----~ 130 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDT----FLPNLKTLILTN-NSIQELGDLDPLA--SCPKLEYLTLLGNP-VEHKK----N 130 (233)
T ss_pred ccccceEEecCCcceeeccchhh----hccccceEEecC-cchhhhhhcchhc--cCCccceeeecCCc-hhccc----C
Confidence 56778888888888888544332 589999999988 5666664334445 88999999877654 22210 0
Q ss_pred ccccccccCCCccEEeeccc
Q 036006 83 KRNNNIVMFPQLQYLKMYDL 102 (133)
Q Consensus 83 ~~~~~~~~~~~L~~L~i~~c 102 (133)
...--+.-+|+|+.|++.+-
T Consensus 131 YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 131 YRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ceeEEEEecCcceEeehhhh
Confidence 00001124788888888755
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.74 E-value=0.00097 Score=53.33 Aligned_cols=80 Identities=23% Similarity=0.217 Sum_probs=38.0
Q ss_pred CCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeeccccccccccc
Q 036006 31 VQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFCT 110 (133)
Q Consensus 31 l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~ 110 (133)
+|.|++|++++|.++..+| ...+ .+-+|++|.+++.. +..++ .++..+.+|.+|++.....+..++.
T Consensus 570 m~~LrVLDLs~~~~l~~LP--~~I~--~Li~LryL~L~~t~-I~~LP--------~~l~~Lk~L~~Lnl~~~~~l~~~~~ 636 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLP--SSIG--ELVHLRYLDLSDTG-ISHLP--------SGLGNLKKLIYLNLEVTGRLESIPG 636 (889)
T ss_pred CcceEEEECCCCCccCcCC--hHHh--hhhhhhcccccCCC-ccccc--------hHHHHHHhhheeccccccccccccc
Confidence 4556666666655555553 1222 45555555555543 33332 2222345555555555544444422
Q ss_pred CcccccCCCCccEEEE
Q 036006 111 RDVHIIKFPSLRKLWI 126 (133)
Q Consensus 111 ~~~~~~~~~~L~~L~i 126 (133)
.. ..+++|++|.+
T Consensus 637 i~---~~L~~Lr~L~l 649 (889)
T KOG4658|consen 637 IL---LELQSLRVLRL 649 (889)
T ss_pred hh---hhcccccEEEe
Confidence 21 13455555554
No 39
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.67 E-value=0.00023 Score=46.33 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=28.6
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEe
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIW 68 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~ 68 (133)
+.+..+|.++++.++.++++.. .+.+|+.|.+++ .++++++. ... .+|.|+.|.+.
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia-----~l~nlevln~~n-nqie~lp~--~is--sl~klr~lnvg 87 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIA-----ELKNLEVLNLSN-NQIEELPT--SIS--SLPKLRILNVG 87 (264)
T ss_pred hhhhhhhhcccCceeecCCcHH-----Hhhhhhhhhccc-chhhhcCh--hhh--hchhhhheecc
Confidence 3455556666666555533321 355666666655 35555532 122 45555555544
No 40
>PLN03150 hypothetical protein; Provisional
Probab=96.64 E-value=0.0045 Score=47.88 Aligned_cols=62 Identities=15% Similarity=0.181 Sum_probs=36.1
Q ss_pred cCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeecccc
Q 036006 30 GVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLK 103 (133)
Q Consensus 30 ~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~ 103 (133)
.+++|+.|+++++ ++....+ .... .+++|+.|+++++. +.... +..+..+++|+.|+++++.
T Consensus 440 ~L~~L~~L~Ls~N-~l~g~iP-~~~~--~l~~L~~LdLs~N~-lsg~i-------P~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 440 KLRHLQSINLSGN-SIRGNIP-PSLG--SITSLEVLDLSYNS-FNGSI-------PESLGQLTSLRILNLNGNS 501 (623)
T ss_pred CCCCCCEEECCCC-cccCcCC-hHHh--CCCCCCEEECCCCC-CCCCC-------chHHhcCCCCCEEECcCCc
Confidence 4677888888775 3332212 2234 67788888877764 33211 1223357778888877663
No 41
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.47 E-value=0.0004 Score=45.24 Aligned_cols=80 Identities=23% Similarity=0.311 Sum_probs=57.8
Q ss_pred CCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeeccccccccccc
Q 036006 31 VQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFCT 110 (133)
Q Consensus 31 l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~ 110 (133)
..+.+.|.++. .+++.+++ -.+ .+.+|+.|.+.+- ++++++. ++..+|+|+.|++. ..+|..+|.
T Consensus 32 ~s~ITrLtLSH-NKl~~vpp--nia--~l~nlevln~~nn-qie~lp~--------~issl~klr~lnvg-mnrl~~lpr 96 (264)
T KOG0617|consen 32 MSNITRLTLSH-NKLTVVPP--NIA--ELKNLEVLNLSNN-QIEELPT--------SISSLPKLRILNVG-MNRLNILPR 96 (264)
T ss_pred hhhhhhhhccc-CceeecCC--cHH--Hhhhhhhhhcccc-hhhhcCh--------hhhhchhhhheecc-hhhhhcCcc
Confidence 45667777776 57777753 344 7889999988876 3777643 34468999999984 557888887
Q ss_pred CcccccCCCCccEEEEcc
Q 036006 111 RDVHIIKFPSLRKLWISR 128 (133)
Q Consensus 111 ~~~~~~~~~~L~~L~i~~ 128 (133)
+.- ++|.|+.|++.+
T Consensus 97 gfg---s~p~levldlty 111 (264)
T KOG0617|consen 97 GFG---SFPALEVLDLTY 111 (264)
T ss_pred ccC---CCchhhhhhccc
Confidence 653 789999888865
No 42
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.86 E-value=0.18 Score=30.41 Aligned_cols=100 Identities=16% Similarity=0.215 Sum_probs=46.8
Q ss_pred CccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccc
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEK 83 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 83 (133)
++|+.+.+.+ .++.+....+. .+.+|+.+.+.+ +++.+.. ..+. .+++++.+.+.+ .+..+....
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~----~~~~l~~i~~~~--~~~~i~~-~~F~--~~~~l~~i~~~~--~~~~i~~~~--- 76 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFS----NCTSLKSINFPN--NLTSIGD-NAFS--NCKSLESITFPN--NLKSIGDNA--- 76 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTT----T-TT-SEEEESS--TTSCE-T-TTTT--T-TT-EEEEETS--TT-EE-TTT---
T ss_pred CCCCEEEECC-CeeEeChhhcc----cccccccccccc--cccccce-eeee--cccccccccccc--ccccccccc---
Confidence 3567777654 44555444433 456888888876 4666632 3444 677888888865 455553211
Q ss_pred cccccccCCCccEEeecccccccccccCcccccCCCCccEEEEc
Q 036006 84 RNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWIS 127 (133)
Q Consensus 84 ~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~ 127 (133)
...+++|+.+.+.. +++.+....+ ..+ +|+.+.+.
T Consensus 77 ----F~~~~~l~~i~~~~--~~~~i~~~~f--~~~-~l~~i~~~ 111 (129)
T PF13306_consen 77 ----FSNCTNLKNIDIPS--NITEIGSSSF--SNC-NLKEINIP 111 (129)
T ss_dssp ----TTT-TTECEEEETT--T-BEEHTTTT--TT--T--EEE-T
T ss_pred ----ccccccccccccCc--cccEEchhhh--cCC-CceEEEEC
Confidence 11356777777743 4556655554 234 66666554
No 43
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=95.79 E-value=0.0014 Score=50.58 Aligned_cols=13 Identities=31% Similarity=0.332 Sum_probs=7.4
Q ss_pred CCCccEEeecccc
Q 036006 91 FPQLQYLKMYDLK 103 (133)
Q Consensus 91 ~~~L~~L~i~~c~ 103 (133)
+..|++|.+++.|
T Consensus 172 L~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNP 184 (1255)
T ss_pred HhhhhhhhcCCCh
Confidence 4456666666554
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.77 E-value=0.0018 Score=45.81 Aligned_cols=55 Identities=24% Similarity=0.277 Sum_probs=36.5
Q ss_pred ccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCC
Q 036006 5 KLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGC 70 (133)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c 70 (133)
-|++++++++.++.+-+. ..-.|.++.|.++. +++..+ ..++ .+++|..|++++.
T Consensus 285 ~LtelDLS~N~I~~iDES-----vKL~Pkir~L~lS~-N~i~~v---~nLa--~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDES-----VKLAPKLRRLILSQ-NRIRTV---QNLA--ELPQLQLLDLSGN 339 (490)
T ss_pred hhhhccccccchhhhhhh-----hhhccceeEEeccc-cceeee---hhhh--hcccceEeecccc
Confidence 467788887766666222 22368888888876 466666 3355 7888888887764
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=0.0038 Score=44.02 Aligned_cols=116 Identities=17% Similarity=0.183 Sum_probs=53.5
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccc
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQ 81 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 81 (133)
.+|.|+.|+++.+.+....... + ....||+.|.+.+- .+......+... .+|.++.|+++... +..+-.++.
T Consensus 95 ~lP~l~~LNls~N~L~s~I~~l-p---~p~~nl~~lVLNgT-~L~w~~~~s~l~--~lP~vtelHmS~N~-~rq~n~Dd~ 166 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSLSSDIKSL-P---LPLKNLRVLVLNGT-GLSWTQSTSSLD--DLPKVTELHMSDNS-LRQLNLDDN 166 (418)
T ss_pred cCccceEeeccCCcCCCccccC-c---ccccceEEEEEcCC-CCChhhhhhhhh--cchhhhhhhhccch-hhhhccccc
Confidence 3566777777666433221111 0 12457777777552 222221122233 67777777776542 222211111
Q ss_pred cccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 82 EKRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 82 ~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
... ..-+.++++.+..|+...+.....+ ...||++..+.+..||
T Consensus 167 c~e----~~s~~v~tlh~~~c~~~~w~~~~~l-~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 167 CIE----DWSTEVLTLHQLPCLEQLWLNKNKL-SRIFPNVNSVFVCEGP 210 (418)
T ss_pred ccc----ccchhhhhhhcCCcHHHHHHHHHhH-HhhcccchheeeecCc
Confidence 000 0233555666666654443332222 1345666666666664
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.73 E-value=0.0026 Score=44.97 Aligned_cols=105 Identities=19% Similarity=0.212 Sum_probs=67.8
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
.|.++.|+++++.+..+-. . ..+++|+.|++++ +.+..+. ++.. .+-|.+.|.+.... ++.+..
T Consensus 306 ~Pkir~L~lS~N~i~~v~n-----L-a~L~~L~~LDLS~-N~Ls~~~--Gwh~--KLGNIKtL~La~N~-iE~LSG---- 369 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQN-----L-AELPQLQLLDLSG-NLLAECV--GWHL--KLGNIKTLKLAQNK-IETLSG---- 369 (490)
T ss_pred ccceeEEeccccceeeehh-----h-hhcccceEeeccc-chhHhhh--hhHh--hhcCEeeeehhhhh-Hhhhhh----
Confidence 5788999999987776622 1 2578999999988 4555552 3444 67789998887653 554421
Q ss_pred ccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 83 KRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 83 ~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
+.-+=+|..|++++. ++..+.... ....+|+|+.+.+.+.|
T Consensus 370 -----L~KLYSLvnLDl~~N-~Ie~ldeV~-~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 370 -----LRKLYSLVNLDLSSN-QIEELDEVN-HIGNLPCLETLRLTGNP 410 (490)
T ss_pred -----hHhhhhheecccccc-chhhHHHhc-ccccccHHHHHhhcCCC
Confidence 112456777777664 344443211 12377999999888766
No 47
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.73 E-value=0.0053 Score=44.74 Aligned_cols=65 Identities=25% Similarity=0.424 Sum_probs=37.0
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEE
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEI 76 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i 76 (133)
+|+|++|+++++.++.+-++.+. ....++.|.+.+ +++..+ ...++. ++..|+.|++++-. ++.+
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe----~~a~l~eL~L~~-N~l~~v-~~~~f~--~ls~L~tL~L~~N~-it~~ 337 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFE----GAAELQELYLTR-NKLEFV-SSGMFQ--GLSGLKTLSLYDNQ-ITTV 337 (498)
T ss_pred cccceEeccCCCccchhhhhhhc----chhhhhhhhcCc-chHHHH-HHHhhh--ccccceeeeecCCe-eEEE
Confidence 57777777777777766544443 345556665554 345444 223444 56666666666542 4443
No 48
>PLN03150 hypothetical protein; Provisional
Probab=95.57 E-value=0.024 Score=43.99 Aligned_cols=62 Identities=16% Similarity=0.154 Sum_probs=43.1
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCC
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCP 71 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~ 71 (133)
.+++|+.|+++++.+....+. ....+++|+.|+++++ ++....+ ..++ .+++|+.|+++++.
T Consensus 440 ~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~N-~lsg~iP-~~l~--~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYN-SFNGSIP-ESLG--QLTSLRILNLNGNS 501 (623)
T ss_pred CCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCCC-CCCCCCc-hHHh--cCCCCCEEECcCCc
Confidence 367889999988866532221 2235899999999986 4543322 2345 89999999999875
No 49
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.34 E-value=0.013 Score=22.89 Aligned_cols=10 Identities=20% Similarity=0.298 Sum_probs=4.3
Q ss_pred CccEEeeccc
Q 036006 93 QLQYLKMYDL 102 (133)
Q Consensus 93 ~L~~L~i~~c 102 (133)
+|+.|++++|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 3444444444
No 50
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=95.33 E-value=0.012 Score=25.70 Aligned_cols=15 Identities=40% Similarity=0.758 Sum_probs=9.0
Q ss_pred CCccEEEEccCCCCC
Q 036006 119 PSLRKLWISRCPEFM 133 (133)
Q Consensus 119 ~~L~~L~i~~c~~l~ 133 (133)
++|++|.+.+|+++|
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 556666666666553
No 51
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.33 E-value=0.00029 Score=51.24 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=16.6
Q ss_pred CCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 91 FPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 91 ~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
+.+|.+|++++. .++.+|..-. .+ .|++|.+.+.|
T Consensus 274 LrsL~rLDlSNN-~is~Lp~sLg---nl-hL~~L~leGNP 308 (565)
T KOG0472|consen 274 LRSLERLDLSNN-DISSLPYSLG---NL-HLKFLALEGNP 308 (565)
T ss_pred hhhhhhhcccCC-ccccCCcccc---cc-eeeehhhcCCc
Confidence 445666666554 2444443221 23 55555555543
No 52
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=95.14 E-value=0.0011 Score=52.53 Aligned_cols=104 Identities=22% Similarity=0.255 Sum_probs=64.9
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
++.|+.|.+.++.+++ ..++.. .++++||.|++++ +.+... +..... .++.||.|.+++-. |+.++.
T Consensus 358 ~~~Lq~LylanN~Ltd---~c~p~l-~~~~hLKVLhLsy-NrL~~f-pas~~~--kle~LeeL~LSGNk-L~~Lp~---- 424 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTD---SCFPVL-VNFKHLKVLHLSY-NRLNSF-PASKLR--KLEELEELNLSGNK-LTTLPD---- 424 (1081)
T ss_pred hHHHHHHHHhcCcccc---cchhhh-ccccceeeeeecc-cccccC-CHHHHh--chHHhHHHhcccch-hhhhhH----
Confidence 3445556666653332 111211 2578899999887 456665 333445 78888888888764 666642
Q ss_pred ccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEcc
Q 036006 83 KRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISR 128 (133)
Q Consensus 83 ~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~ 128 (133)
.+..++.|++|..++. .+..+|..+ .++.|+.++++.
T Consensus 425 ----tva~~~~L~tL~ahsN-~l~~fPe~~----~l~qL~~lDlS~ 461 (1081)
T KOG0618|consen 425 ----TVANLGRLHTLRAHSN-QLLSFPELA----QLPQLKVLDLSC 461 (1081)
T ss_pred ----HHHhhhhhHHHhhcCC-ceeechhhh----hcCcceEEeccc
Confidence 2235788888887654 577777433 578888888753
No 53
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.93 E-value=0.0056 Score=44.87 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=30.2
Q ss_pred ccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 87 NIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 87 ~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
++..+.+|..|++.+. .+..+|.+.- .+++|++|++.+.|
T Consensus 500 ~l~nm~nL~tLDL~nN-dlq~IPp~Lg---nmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 500 GLKNMRNLTTLDLQNN-DLQQIPPILG---NMTNLRHLELDGNP 539 (565)
T ss_pred HhhhhhhcceeccCCC-chhhCChhhc---cccceeEEEecCCc
Confidence 3456778888888765 5777877542 78999999998876
No 54
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=94.84 E-value=0.012 Score=43.00 Aligned_cols=86 Identities=21% Similarity=0.192 Sum_probs=58.7
Q ss_pred cCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeecccccccccc
Q 036006 30 GVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFC 109 (133)
Q Consensus 30 ~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~ 109 (133)
.+++|++|++++ ++++.+. ..++. +...+++|++.+-. ++.+.. + -...+..|+.|++++. +++.+.
T Consensus 272 ~L~~L~~lnlsn-N~i~~i~-~~aFe--~~a~l~eL~L~~N~-l~~v~~--~-----~f~~ls~L~tL~L~~N-~it~~~ 338 (498)
T KOG4237|consen 272 KLPNLRKLNLSN-NKITRIE-DGAFE--GAAELQELYLTRNK-LEFVSS--G-----MFQGLSGLKTLSLYDN-QITTVA 338 (498)
T ss_pred hcccceEeccCC-Cccchhh-hhhhc--chhhhhhhhcCcch-HHHHHH--H-----hhhccccceeeeecCC-eeEEEe
Confidence 467888888887 5777763 34555 77788888887753 555421 1 1124678999999886 688888
Q ss_pred cCcccccCCCCccEEEEccCC
Q 036006 110 TRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 110 ~~~~~~~~~~~L~~L~i~~c~ 130 (133)
++++ ....+|.+|.+...|
T Consensus 339 ~~aF--~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 339 PGAF--QTLFSLSTLNLLSNP 357 (498)
T ss_pred cccc--cccceeeeeehccCc
Confidence 8776 467788888776544
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.83 E-value=0.019 Score=39.48 Aligned_cols=109 Identities=16% Similarity=0.192 Sum_probs=54.0
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceecc-CccccccccCcccEEEEeCCCCceEEccccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFS-SSILSNSIFVRLQHLEIWGCPVLEEIIIVDQ 81 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 81 (133)
|..|+.+++.++.++.+ .+++ .+|+|++|.+++- .....+. ...+. .+|+|++|.++.-. +..+..
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P----~Lp~LkkL~lsdn-~~~~~~~l~vl~e--~~P~l~~l~ls~Nk-i~~lst--- 108 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFP----KLPKLKKLELSDN-YRRVSGGLEVLAE--KAPNLKVLNLSGNK-IKDLST--- 108 (260)
T ss_pred ccchhhhhhhccceeec--ccCC----CcchhhhhcccCC-cccccccceehhh--hCCceeEEeecCCc-cccccc---
Confidence 34556666666644433 1122 4678888887653 1111111 11223 55888888877653 222211
Q ss_pred cccccccccCCCccEEeecccccccccccC--cccccCCCCccEEEEccC
Q 036006 82 EKRNNNIVMFPQLQYLKMYDLKKLTSFCTR--DVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 82 ~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~--~~~~~~~~~L~~L~i~~c 129 (133)
-.+...+++|..|.+.+|+-.. +-.. .. ...+|+|.+|+-.++
T Consensus 109 ---l~pl~~l~nL~~Ldl~n~~~~~-l~dyre~v-f~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 109 ---LRPLKELENLKSLDLFNCSVTN-LDDYREKV-FLLLPSLKYLDGCDV 153 (260)
T ss_pred ---cchhhhhcchhhhhcccCCccc-cccHHHHH-HHHhhhhcccccccc
Confidence 1122247778888888775433 2111 11 124566666654443
No 56
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.76 E-value=0.011 Score=43.54 Aligned_cols=79 Identities=25% Similarity=0.265 Sum_probs=45.3
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
|.+|+.+++.++.++.+... ...+++|++|++++ ..++.+ .... .++.|+.|++.+.. ++.+....
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~-----l~~~~~L~~L~ls~-N~I~~i---~~l~--~l~~L~~L~l~~N~-i~~~~~~~-- 159 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENL-----LSSLVNLQVLDLSF-NKITKL---EGLS--TLTLLKELNLSGNL-ISDISGLE-- 159 (414)
T ss_pred ccceeeeeccccchhhcccc-----hhhhhcchheeccc-cccccc---cchh--hccchhhheeccCc-chhccCCc--
Confidence 56677777777766655221 12477778887776 456665 2333 56667777777664 44442111
Q ss_pred ccccccccCCCccEEeeccc
Q 036006 83 KRNNNIVMFPQLQYLKMYDL 102 (133)
Q Consensus 83 ~~~~~~~~~~~L~~L~i~~c 102 (133)
.+++|+.+++.++
T Consensus 160 -------~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 160 -------SLKSLKLLDLSYN 172 (414)
T ss_pred -------cchhhhcccCCcc
Confidence 2556666666554
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.70 E-value=0.28 Score=29.53 Aligned_cols=94 Identities=18% Similarity=0.235 Sum_probs=40.8
Q ss_pred CccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccc
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEK 83 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 83 (133)
++|+.+.+.+ ++..+....+. ..++++.+.+.+ .+..++. ..+. .+++|+.+.+.. ++..+....
T Consensus 35 ~~l~~i~~~~-~~~~i~~~~F~----~~~~l~~i~~~~--~~~~i~~-~~F~--~~~~l~~i~~~~--~~~~i~~~~--- 99 (129)
T PF13306_consen 35 TSLKSINFPN-NLTSIGDNAFS----NCKSLESITFPN--NLKSIGD-NAFS--NCTNLKNIDIPS--NITEIGSSS--- 99 (129)
T ss_dssp TT-SEEEESS-TTSCE-TTTTT----T-TT-EEEEETS--TT-EE-T-TTTT--T-TTECEEEETT--T-BEEHTTT---
T ss_pred cccccccccc-cccccceeeee----cccccccccccc--ccccccc-cccc--ccccccccccCc--cccEEchhh---
Confidence 3566666655 34444333332 456889999965 5666632 3444 688999998854 356653221
Q ss_pred cccccccCCCccEEeecccccccccccCcccccCCCCc
Q 036006 84 RNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSL 121 (133)
Q Consensus 84 ~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L 121 (133)
.... +|+.+.+.+ +++.+....+ ..+++|
T Consensus 100 ----f~~~-~l~~i~~~~--~~~~i~~~~F--~~~~~l 128 (129)
T PF13306_consen 100 ----FSNC-NLKEINIPS--NITKIEENAF--KNCTKL 128 (129)
T ss_dssp ----TTT--T--EEE-TT--B-SS----GG--G-----
T ss_pred ----hcCC-CceEEEECC--CccEECCccc--cccccC
Confidence 1123 677776654 5566655544 244444
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.39 E-value=0.0013 Score=45.96 Aligned_cols=60 Identities=20% Similarity=0.201 Sum_probs=31.4
Q ss_pred CCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeecccc
Q 036006 31 VQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLK 103 (133)
Q Consensus 31 l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~ 103 (133)
.|.|++|.++- ++++.+ ..+. .+++|++|++.... ++++.... .+..+|+|+.|.+...|
T Consensus 40 Mp~lEVLsLSv-NkIssL---~pl~--rCtrLkElYLRkN~-I~sldEL~------YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 40 MPLLEVLSLSV-NKISSL---APLQ--RCTRLKELYLRKNC-IESLDELE------YLKNLPSLRTLWLDENP 99 (388)
T ss_pred cccceeEEeec-cccccc---hhHH--HHHHHHHHHHHhcc-cccHHHHH------HHhcCchhhhHhhccCC
Confidence 56666666642 445554 2334 66677777665321 33332111 12247777777776554
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.10 E-value=0.044 Score=37.72 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=17.0
Q ss_pred CCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 91 FPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 91 ~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
.|+|+.+++++. +++.+.... +...+.+|..|...+|+
T Consensus 90 ~P~l~~l~ls~N-ki~~lstl~-pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 90 APNLKVLNLSGN-KIKDLSTLR-PLKELENLKSLDLFNCS 127 (260)
T ss_pred CCceeEEeecCC-ccccccccc-hhhhhcchhhhhcccCC
Confidence 466666666543 222221111 12244555555555554
No 60
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.17 E-value=0.1 Score=21.68 Aligned_cols=14 Identities=43% Similarity=0.563 Sum_probs=6.7
Q ss_pred cceeeeccceeeee
Q 036006 6 LENLELRSINVERI 19 (133)
Q Consensus 6 L~~L~l~~~~l~~~ 19 (133)
|++|++++|+++.+
T Consensus 2 L~~Ldls~n~l~~i 15 (22)
T PF00560_consen 2 LEYLDLSGNNLTSI 15 (22)
T ss_dssp ESEEEETSSEESEE
T ss_pred ccEEECCCCcCEeC
Confidence 44555555544433
No 61
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=92.88 E-value=0.032 Score=40.51 Aligned_cols=87 Identities=21% Similarity=0.196 Sum_probs=44.1
Q ss_pred CccceeeeccceeeeecccccccccccC-CCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGV-QNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l-~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
+.++.|.+.+..+..+... ...+ ++|+.|++++ .++..++ .... .+++|+.|.+..++ +.++....+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~-----~~~~~~nL~~L~l~~-N~i~~l~--~~~~--~l~~L~~L~l~~N~-l~~l~~~~~- 183 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPL-----IGLLKSNLKELDLSD-NKIESLP--SPLR--NLPNLKNLDLSFND-LSDLPKLLS- 183 (394)
T ss_pred cceeEEecCCcccccCccc-----cccchhhcccccccc-cchhhhh--hhhh--ccccccccccCCch-hhhhhhhhh-
Confidence 3455555555555555222 1123 2677777765 4555542 1233 66777777777764 555433211
Q ss_pred ccccccccCCCccEEeeccccccccccc
Q 036006 83 KRNNNIVMFPQLQYLKMYDLKKLTSFCT 110 (133)
Q Consensus 83 ~~~~~~~~~~~L~~L~i~~c~~L~~l~~ 110 (133)
..+.|+.|.+++. +++.++.
T Consensus 184 -------~~~~L~~L~ls~N-~i~~l~~ 203 (394)
T COG4886 184 -------NLSNLNNLDLSGN-KISDLPP 203 (394)
T ss_pred -------hhhhhhheeccCC-ccccCch
Confidence 2445555555544 3444443
No 62
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=91.62 E-value=0.041 Score=39.49 Aligned_cols=13 Identities=31% Similarity=0.529 Sum_probs=8.1
Q ss_pred cCCCccEEeeccc
Q 036006 90 MFPQLQYLKMYDL 102 (133)
Q Consensus 90 ~~~~L~~L~i~~c 102 (133)
.|++|+.|++.+|
T Consensus 239 s~~~L~El~l~dc 251 (382)
T KOG1909|consen 239 SWPHLRELNLGDC 251 (382)
T ss_pred ccchheeeccccc
Confidence 4566666666666
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.89 E-value=0.031 Score=39.64 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=12.5
Q ss_pred ccCcccEEEEeCCCCceEE
Q 036006 58 IFVRLQHLEIWGCPVLEEI 76 (133)
Q Consensus 58 ~l~~L~~L~i~~c~~l~~i 76 (133)
.||++..+.+.+|| ++..
T Consensus 197 ~Fpnv~sv~v~e~P-lK~~ 214 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGP-LKTE 214 (418)
T ss_pred hcccchheeeecCc-ccch
Confidence 57788888777776 4443
No 64
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.61 E-value=0.15 Score=21.91 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=12.8
Q ss_pred CCccceeeeccceeeeecc
Q 036006 3 LPKLENLELRSINVERIWQ 21 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~ 21 (133)
+++|++|++.++.++.++.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 4567777777776666643
No 65
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.61 E-value=0.15 Score=21.91 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=12.8
Q ss_pred CCccceeeeccceeeeecc
Q 036006 3 LPKLENLELRSINVERIWQ 21 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~ 21 (133)
+++|++|++.++.++.++.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 4567777777776666643
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.99 E-value=0.009 Score=41.85 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=17.7
Q ss_pred CCCccEEEEecCCCcceeccCccccccccCcccEEEEe
Q 036006 31 VQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIW 68 (133)
Q Consensus 31 l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~ 68 (133)
+.+.++|+.+|| .+.++ ++.. .+|.||.|.++
T Consensus 18 l~~vkKLNcwg~-~L~DI---sic~--kMp~lEVLsLS 49 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDI---SICE--KMPLLEVLSLS 49 (388)
T ss_pred HHHhhhhcccCC-CccHH---HHHH--hcccceeEEee
Confidence 445566666665 45555 3444 56666666554
No 67
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=89.94 E-value=0.16 Score=36.94 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=18.9
Q ss_pred cCCCccEEeecccccccccccCcccccCCCCccEEEEcc
Q 036006 90 MFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISR 128 (133)
Q Consensus 90 ~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~ 128 (133)
.+++++.|++++. .+++++... ...+++.+++.+
T Consensus 253 ~l~~l~~L~~s~n-~i~~i~~~~----~~~~l~~L~~s~ 286 (394)
T COG4886 253 NLSNLETLDLSNN-QISSISSLG----SLTNLRELDLSG 286 (394)
T ss_pred cccccceeccccc-ccccccccc----ccCccCEEeccC
Confidence 4555666666554 355554311 456777776654
No 68
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=88.21 E-value=0.0088 Score=46.97 Aligned_cols=77 Identities=25% Similarity=0.241 Sum_probs=37.6
Q ss_pred CccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccc
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEK 83 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 83 (133)
|.|+.|+++++.+..+- . ...++.|++|+|+. +.+..++...+. ++ .|..|.+++.. ++.+-
T Consensus 187 ~ale~LnLshNk~~~v~--~----Lr~l~~LkhLDlsy-N~L~~vp~l~~~---gc-~L~~L~lrnN~-l~tL~------ 248 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVD--N----LRRLPKLKHLDLSY-NCLRHVPQLSMV---GC-KLQLLNLRNNA-LTTLR------ 248 (1096)
T ss_pred HHhhhhccchhhhhhhH--H----HHhccccccccccc-chhccccccchh---hh-hheeeeecccH-HHhhh------
Confidence 45666666666444431 0 11366677776654 345555332222 22 26666665542 33331
Q ss_pred cccccccCCCccEEeecc
Q 036006 84 RNNNIVMFPQLQYLKMYD 101 (133)
Q Consensus 84 ~~~~~~~~~~L~~L~i~~ 101 (133)
++..+.+|+.|++++
T Consensus 249 ---gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 249 ---GIENLKSLYGLDLSY 263 (1096)
T ss_pred ---hHHhhhhhhccchhH
Confidence 111355666666654
No 69
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=85.58 E-value=0.06 Score=38.71 Aligned_cols=122 Identities=18% Similarity=0.136 Sum_probs=60.6
Q ss_pred CccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCcccc-ccccCcccEEEEeCCCCceEEcccccc
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILS-NSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~-~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
|+|+.+.+..+.+..=.......-...+++|++|++++- -++.-+...+.. ++.+++|+.|++++|. ++.-......
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~ 262 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFV 262 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHH
Confidence 677777777663331100000101125789999988873 222221111111 3367889999999985 4432111000
Q ss_pred ccccccccCCCccEEeecccccccccccCc--ccccCCCCccEEEEccCC
Q 036006 83 KRNNNIVMFPQLQYLKMYDLKKLTSFCTRD--VHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 83 ~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~--~~~~~~~~L~~L~i~~c~ 130 (133)
. .-...+|+|+.+.+.++ .++.-.... .+....|.|+.|.+.+|.
T Consensus 263 ~--al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 263 D--ALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred H--HHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 0 00013788888888776 233221110 001135777777777664
No 70
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=85.24 E-value=0.11 Score=39.81 Aligned_cols=111 Identities=17% Similarity=0.134 Sum_probs=55.6
Q ss_pred CccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccc
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEK 83 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 83 (133)
..|..++++.+.+..++.. . ++--|+.|.+++ .+++.++. ..+ ..+.|-.|.+..|. +..+....+..
T Consensus 121 ~~lt~l~ls~NqlS~lp~~-----l-C~lpLkvli~sN-Nkl~~lp~--~ig--~~~tl~~ld~s~ne-i~slpsql~~l 188 (722)
T KOG0532|consen 121 EALTFLDLSSNQLSHLPDG-----L-CDLPLKVLIVSN-NKLTSLPE--EIG--LLPTLAHLDVSKNE-IQSLPSQLGYL 188 (722)
T ss_pred hHHHHhhhccchhhcCChh-----h-hcCcceeEEEec-CccccCCc--ccc--cchhHHHhhhhhhh-hhhchHHhhhH
Confidence 3455556655544444221 1 223467777766 46666642 223 45666666666553 43333221110
Q ss_pred c--------ccccccC------CCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 84 R--------NNNIVMF------PQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 84 ~--------~~~~~~~------~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
. ......+ -.|..|++ .|.++.++|... ..+..|++|.+.+.|
T Consensus 189 ~slr~l~vrRn~l~~lp~El~~LpLi~lDf-ScNkis~iPv~f---r~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 189 TSLRDLNVRRNHLEDLPEELCSLPLIRLDF-SCNKISYLPVDF---RKMRHLQVLQLENNP 245 (722)
T ss_pred HHHHHHHHhhhhhhhCCHHHhCCceeeeec-ccCceeecchhh---hhhhhheeeeeccCC
Confidence 0 0001111 14566666 455777777654 266777877776654
No 71
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=84.12 E-value=0.47 Score=35.00 Aligned_cols=57 Identities=19% Similarity=0.124 Sum_probs=35.7
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCC
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGC 70 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c 70 (133)
.+++|+.|+++++.++.++.-. .++.|+.|++.+. .+..+ ..+. .+++|+.++++++
T Consensus 116 ~~~~L~~L~ls~N~I~~i~~l~------~l~~L~~L~l~~N-~i~~~---~~~~--~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 116 SLVNLQVLDLSFNKITKLEGLS------TLTLLKELNLSGN-LISDI---SGLE--SLKSLKLLDLSYN 172 (414)
T ss_pred hhhcchheeccccccccccchh------hccchhhheeccC-cchhc---cCCc--cchhhhcccCCcc
Confidence 4788999999998888773221 3556777777763 45554 2333 4556666666554
No 72
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.83 E-value=1.5 Score=19.06 Aligned_cols=17 Identities=35% Similarity=0.649 Sum_probs=11.7
Q ss_pred CCccceeeeccceeeee
Q 036006 3 LPKLENLELRSINVERI 19 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~ 19 (133)
+.+|+.|+++++.++.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 45778888877766544
No 73
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=78.06 E-value=0.62 Score=35.65 Aligned_cols=65 Identities=22% Similarity=0.157 Sum_probs=33.3
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCC
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCP 71 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~ 71 (133)
+|.+..+.++++.+..+ +..++.+...|+|+.|.+++-.+......+..-- +..-||+|.+.+.|
T Consensus 217 ~p~i~sl~lsnNrL~~L--d~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHL--DALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNP 281 (585)
T ss_pred Ccceeeeecccchhhch--hhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCc
Confidence 56666777777655544 1223333457788888877631111111100111 34567777777765
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=75.49 E-value=2.1 Score=17.74 Aligned_cols=12 Identities=33% Similarity=0.421 Sum_probs=5.6
Q ss_pred CCccEEEEccCC
Q 036006 119 PSLRKLWISRCP 130 (133)
Q Consensus 119 ~~L~~L~i~~c~ 130 (133)
++|++|++.+|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 455666665553
No 75
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=63.15 E-value=3.5 Score=16.78 Aligned_cols=18 Identities=22% Similarity=0.647 Sum_probs=11.1
Q ss_pred ccceeeeccceeeeeccc
Q 036006 5 KLENLELRSINVERIWQN 22 (133)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~ 22 (133)
+|..|++.+.+++.+|++
T Consensus 1 ~LVeL~m~~S~lekLW~G 18 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEG 18 (20)
T ss_pred CcEEEECCCCChHHhcCc
Confidence 355666666666666654
No 76
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=61.16 E-value=4.9 Score=17.52 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=9.4
Q ss_pred Cccceeeeccceeeee
Q 036006 4 PKLENLELRSINVERI 19 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~ 19 (133)
++|+.|.+++++++.+
T Consensus 2 ~~L~~L~vs~N~Lt~L 17 (26)
T smart00364 2 PSLKELNVSNNQLTSL 17 (26)
T ss_pred cccceeecCCCccccC
Confidence 3566666666655544
No 77
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=60.74 E-value=1.1 Score=28.49 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=5.0
Q ss_pred CCCccEEeecc
Q 036006 91 FPQLQYLKMYD 101 (133)
Q Consensus 91 ~~~L~~L~i~~ 101 (133)
+|.|+.|+++.
T Consensus 99 m~aLr~lNl~~ 109 (177)
T KOG4579|consen 99 MPALRSLNLRF 109 (177)
T ss_pred hHHhhhccccc
Confidence 44444444443
No 78
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=52.76 E-value=3.6 Score=33.28 Aligned_cols=56 Identities=25% Similarity=0.184 Sum_probs=33.1
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeC
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWG 69 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~ 69 (133)
++.|++|+|+.+.+..++.-. ..-..|..|.+++ +-++.+ .... ++.+|+.|++++
T Consensus 208 l~~LkhLDlsyN~L~~vp~l~-----~~gc~L~~L~lrn-N~l~tL---~gie--~LksL~~LDlsy 263 (1096)
T KOG1859|consen 208 LPKLKHLDLSYNCLRHVPQLS-----MVGCKLQLLNLRN-NALTTL---RGIE--NLKSLYGLDLSY 263 (1096)
T ss_pred cccccccccccchhccccccc-----hhhhhheeeeecc-cHHHhh---hhHH--hhhhhhccchhH
Confidence 578999999988766663221 1123477887776 344444 2223 556666666543
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=40.14 E-value=20 Score=15.50 Aligned_cols=11 Identities=36% Similarity=0.655 Sum_probs=6.2
Q ss_pred Cccceeeeccc
Q 036006 4 PKLENLELRSI 14 (133)
Q Consensus 4 ~~L~~L~l~~~ 14 (133)
++|++|+++++
T Consensus 2 ~~L~~LdL~~N 12 (28)
T smart00368 2 PSLRELDLSNN 12 (28)
T ss_pred CccCEEECCCC
Confidence 34566666555
No 80
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=21.08 E-value=1.2e+02 Score=14.51 Aligned_cols=8 Identities=38% Similarity=0.409 Sum_probs=3.6
Q ss_pred CCccEEEE
Q 036006 119 PSLRKLWI 126 (133)
Q Consensus 119 ~~L~~L~i 126 (133)
++|++|.+
T Consensus 34 ~sl~~L~f 41 (44)
T PF05725_consen 34 NSLKSLSF 41 (44)
T ss_pred CCceEEEe
Confidence 44444444
Done!