Query 036006
Match_columns 133
No_of_seqs 150 out of 1225
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 14:17:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036006.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036006hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.2 2.2E-10 7.5E-15 79.9 9.4 85 31-131 205-289 (328)
2 3e4g_A ATP synthase subunit S, 99.1 9.6E-11 3.3E-15 75.0 4.0 92 33-133 62-153 (176)
3 2xwt_C Thyrotropin receptor; s 99.0 2.6E-09 9E-14 71.0 10.6 66 5-77 32-97 (239)
4 4fcg_A Uncharacterized protein 99.0 8.8E-10 3E-14 76.9 8.1 105 3-127 205-309 (328)
5 3e4g_A ATP synthase subunit S, 99.0 8.6E-11 2.9E-15 75.2 2.4 91 5-109 62-156 (176)
6 3e6j_A Variable lymphocyte rec 99.0 2E-09 6.7E-14 71.5 9.1 39 89-130 132-170 (229)
7 3zyi_A Leucine-rich repeat-con 99.0 2.6E-09 8.9E-14 77.3 10.3 108 3-128 98-205 (452)
8 2v9t_B SLIT homolog 2 protein 99.0 2.7E-09 9.2E-14 70.4 9.5 115 4-130 32-163 (220)
9 3zyj_A Leucine-rich repeat-con 99.0 2.7E-09 9.4E-14 76.9 10.3 60 3-70 87-146 (440)
10 2xwt_C Thyrotropin receptor; s 99.0 1.4E-09 4.7E-14 72.4 8.1 62 2-70 53-115 (239)
11 2o6s_A Variable lymphocyte rec 99.0 3.5E-09 1.2E-13 69.0 9.2 38 90-130 122-159 (208)
12 4g8a_A TOLL-like receptor 4; l 99.0 3.3E-09 1.1E-13 78.8 10.1 105 5-128 53-157 (635)
13 3rfs_A Internalin B, repeat mo 99.0 3.3E-09 1.1E-13 72.0 9.1 116 3-130 84-216 (272)
14 2v70_A SLIT-2, SLIT homolog 2 99.0 4.6E-09 1.6E-13 69.3 9.4 38 90-130 127-164 (220)
15 3v47_A TOLL-like receptor 5B a 99.0 6E-09 2.1E-13 75.0 10.4 85 31-130 322-406 (455)
16 2o6q_A Variable lymphocyte rec 99.0 4.4E-09 1.5E-13 71.3 9.1 116 3-130 84-216 (270)
17 3m19_A Variable lymphocyte rec 99.0 4.7E-09 1.6E-13 70.4 9.1 116 3-130 58-190 (251)
18 1ozn_A Reticulon 4 receptor; N 98.9 6.2E-09 2.1E-13 70.9 9.5 36 91-129 152-187 (285)
19 3rfs_A Internalin B, repeat mo 98.9 5E-09 1.7E-13 71.1 8.9 64 2-76 61-124 (272)
20 3m19_A Variable lymphocyte rec 98.9 5.4E-09 1.8E-13 70.1 8.9 114 4-129 35-165 (251)
21 4ezg_A Putative uncharacterize 98.9 3.3E-09 1.1E-13 68.7 7.5 58 3-70 65-122 (197)
22 3zyj_A Leucine-rich repeat-con 98.9 7E-09 2.4E-13 74.8 9.7 35 3-41 111-145 (440)
23 2ell_A Acidic leucine-rich nuc 98.9 5.8E-09 2E-13 65.8 8.2 58 3-71 23-82 (168)
24 2o6r_A Variable lymphocyte rec 98.9 8.4E-09 2.9E-13 65.6 9.0 109 3-130 27-135 (177)
25 3zyi_A Leucine-rich repeat-con 98.9 1E-08 3.5E-13 74.1 10.4 117 2-129 121-252 (452)
26 2o6q_A Variable lymphocyte rec 98.9 8.3E-09 2.8E-13 69.9 9.2 36 31-70 84-119 (270)
27 4ezg_A Putative uncharacterize 98.9 7.3E-09 2.5E-13 67.1 8.5 110 3-129 43-169 (197)
28 2ell_A Acidic leucine-rich nuc 98.9 2.4E-09 8.4E-14 67.5 5.9 110 2-131 47-159 (168)
29 2ast_B S-phase kinase-associat 98.9 7.8E-10 2.7E-14 76.8 3.8 38 91-130 221-258 (336)
30 2o6s_A Variable lymphocyte rec 98.9 1.3E-08 4.6E-13 66.2 9.0 108 3-129 27-134 (208)
31 4g8a_A TOLL-like receptor 4; l 98.9 8.9E-09 3E-13 76.5 8.9 111 2-130 74-184 (635)
32 1ozn_A Reticulon 4 receptor; N 98.9 1.8E-08 6.3E-13 68.5 9.7 115 4-129 32-163 (285)
33 2v9t_B SLIT homolog 2 protein 98.9 2E-08 6.9E-13 66.2 9.5 67 31-110 31-97 (220)
34 3e6j_A Variable lymphocyte rec 98.9 1.3E-08 4.6E-13 67.4 8.5 107 3-129 39-145 (229)
35 2xot_A Amphoterin-induced prot 98.9 2.6E-08 9E-13 70.2 10.2 110 3-129 63-173 (361)
36 2wfh_A SLIT homolog 2 protein 98.9 2.2E-08 7.5E-13 64.8 9.0 108 3-130 30-137 (193)
37 4fmz_A Internalin; leucine ric 98.8 1.3E-08 4.5E-13 70.9 8.4 17 91-107 131-147 (347)
38 3o6n_A APL1; leucine-rich repe 98.8 1.8E-08 6.3E-13 71.4 9.3 108 3-129 68-175 (390)
39 2z80_A TOLL-like receptor 2, v 98.8 7.5E-09 2.6E-13 72.5 6.8 59 4-70 52-110 (353)
40 2id5_A Lingo-1, leucine rich r 98.8 3.4E-08 1.2E-12 71.7 10.5 60 3-70 55-114 (477)
41 2z62_A TOLL-like receptor 4, v 98.8 3.9E-08 1.3E-12 66.6 10.0 113 5-130 29-160 (276)
42 1p9a_G Platelet glycoprotein I 98.8 2.1E-08 7.2E-13 68.8 8.7 65 2-76 75-139 (290)
43 2z63_A TOLL-like receptor 4, v 98.8 2.3E-08 7.9E-13 73.8 9.5 62 58-130 468-529 (570)
44 3o53_A Protein LRIM1, AGAP0063 98.8 1.6E-08 5.6E-13 69.9 8.1 37 90-130 212-248 (317)
45 1p9a_G Platelet glycoprotein I 98.8 2.8E-08 9.4E-13 68.2 8.9 63 2-76 53-115 (290)
46 2z80_A TOLL-like receptor 2, v 98.8 1.4E-08 4.7E-13 71.2 7.5 35 3-41 75-109 (353)
47 2je0_A Acidic leucine-rich nuc 98.8 1E-08 3.5E-13 63.4 6.0 105 3-129 16-123 (149)
48 3o6n_A APL1; leucine-rich repe 98.8 1.7E-08 5.9E-13 71.5 7.8 35 90-130 316-350 (390)
49 1a9n_A U2A', U2A'; complex (nu 98.8 3.4E-08 1.2E-12 62.8 8.4 62 3-76 18-79 (176)
50 3oja_B Anopheles plasmodium-re 98.8 3E-08 1E-12 74.1 9.3 108 3-129 74-181 (597)
51 1w8a_A SLIT protein; signaling 98.8 8E-08 2.7E-12 62.0 10.1 109 4-130 29-137 (192)
52 2z66_A Variable lymphocyte rec 98.8 4.5E-08 1.5E-12 67.2 9.4 17 3-19 100-116 (306)
53 2ast_B S-phase kinase-associat 98.8 2.8E-09 9.7E-14 73.9 2.9 40 88-129 243-282 (336)
54 2z62_A TOLL-like receptor 4, v 98.8 5E-08 1.7E-12 66.1 8.8 117 2-129 50-187 (276)
55 4fmz_A Internalin; leucine ric 98.8 2.3E-08 7.8E-13 69.7 7.2 56 3-70 220-275 (347)
56 3o53_A Protein LRIM1, AGAP0063 98.8 6.2E-08 2.1E-12 67.0 9.3 108 2-130 118-225 (317)
57 2je0_A Acidic leucine-rich nuc 98.8 4.7E-09 1.6E-13 64.9 3.2 106 2-127 40-148 (149)
58 3v47_A TOLL-like receptor 5B a 98.7 1.1E-07 3.9E-12 68.4 10.3 108 4-130 275-382 (455)
59 3oja_B Anopheles plasmodium-re 98.7 3.4E-08 1.2E-12 73.8 7.6 35 90-130 322-356 (597)
60 1h6u_A Internalin H; cell adhe 98.7 5.7E-08 1.9E-12 67.1 8.1 34 91-129 150-183 (308)
61 2ft3_A Biglycan; proteoglycan, 98.7 8.2E-08 2.8E-12 66.7 9.0 104 4-129 54-157 (332)
62 2z81_A CD282 antigen, TOLL-lik 98.7 2.6E-08 8.7E-13 73.3 6.7 59 4-70 26-84 (549)
63 2z63_A TOLL-like receptor 4, v 98.7 1.2E-07 4E-12 70.0 10.2 113 4-129 28-159 (570)
64 4ay9_X Follicle-stimulating ho 98.7 2E-07 6.9E-12 65.3 10.9 91 4-109 30-120 (350)
65 1a9n_A U2A', U2A'; complex (nu 98.7 2.6E-08 8.7E-13 63.4 5.8 107 4-130 42-151 (176)
66 2v70_A SLIT-2, SLIT homolog 2 98.7 1.8E-07 6E-12 61.7 9.9 108 4-129 32-139 (220)
67 3vq2_A TLR4, TOLL-like recepto 98.7 9.3E-08 3.2E-12 71.2 9.2 36 90-129 126-163 (606)
68 2id5_A Lingo-1, leucine rich r 98.7 1.7E-07 5.7E-12 68.1 10.3 60 3-70 103-162 (477)
69 3vq2_A TLR4, TOLL-like recepto 98.7 8.6E-08 2.9E-12 71.4 8.9 37 90-130 519-556 (606)
70 3oja_A Leucine-rich immune mol 98.7 7.9E-08 2.7E-12 70.4 8.2 37 90-130 212-248 (487)
71 4b8c_D Glucose-repressible alc 98.7 3.5E-08 1.2E-12 75.5 6.5 106 2-130 222-327 (727)
72 1h6t_A Internalin B; cell adhe 98.7 1E-07 3.5E-12 65.3 8.0 35 90-129 154-188 (291)
73 2z66_A Variable lymphocyte rec 98.7 1.6E-07 5.6E-12 64.4 9.0 18 3-20 77-94 (306)
74 1h6t_A Internalin B; cell adhe 98.6 1.2E-07 4.1E-12 65.0 7.9 58 58-130 154-211 (291)
75 3oja_A Leucine-rich immune mol 98.6 1.1E-07 3.9E-12 69.5 8.2 63 3-76 33-95 (487)
76 2xot_A Amphoterin-induced prot 98.6 3.5E-07 1.2E-11 64.4 10.4 108 4-129 39-146 (361)
77 1h6u_A Internalin H; cell adhe 98.6 1.3E-07 4.4E-12 65.3 7.9 110 2-129 105-227 (308)
78 1xku_A Decorin; proteoglycan, 98.6 1.2E-07 4.2E-12 65.7 7.7 114 4-129 52-181 (330)
79 3t6q_A CD180 antigen; protein- 98.6 3.4E-07 1.2E-11 68.2 10.5 17 3-19 277-293 (606)
80 3j0a_A TOLL-like receptor 5; m 98.6 4E-07 1.4E-11 70.6 11.1 115 4-129 24-158 (844)
81 1m9s_A Internalin B; cell inva 98.6 1.4E-07 4.9E-12 70.8 8.3 35 90-129 151-185 (605)
82 1xku_A Decorin; proteoglycan, 98.6 3.5E-07 1.2E-11 63.4 9.7 60 58-129 214-273 (330)
83 3t6q_A CD180 antigen; protein- 98.6 3.2E-07 1.1E-11 68.3 9.9 113 5-129 34-163 (606)
84 1xeu_A Internalin C; cellular 98.6 2.1E-07 7.2E-12 62.9 8.1 56 3-70 40-95 (263)
85 3a79_B TLR6, VLRB.59, TOLL-lik 98.6 2.7E-07 9.3E-12 68.3 9.3 105 3-129 51-156 (562)
86 2z7x_B TOLL-like receptor 1, v 98.6 2.9E-07 9.8E-12 67.4 9.3 120 2-130 346-479 (520)
87 1xeu_A Internalin C; cellular 98.6 2.1E-07 7.3E-12 62.9 7.8 101 2-130 61-161 (263)
88 1m9s_A Internalin B; cell inva 98.6 1.5E-07 5.2E-12 70.7 7.6 38 88-130 171-208 (605)
89 1ziw_A TOLL-like receptor 3; i 98.6 1.7E-07 5.7E-12 70.8 7.8 12 91-102 120-131 (680)
90 1o6v_A Internalin A; bacterial 98.6 3.3E-07 1.1E-11 66.5 8.7 15 3-17 242-256 (466)
91 4eco_A Uncharacterized protein 98.6 3E-07 1E-11 69.3 8.6 37 88-130 562-598 (636)
92 2z81_A CD282 antigen, TOLL-lik 98.5 1.9E-07 6.6E-12 68.7 7.2 61 2-70 48-108 (549)
93 1ziw_A TOLL-like receptor 3; i 98.5 5.2E-07 1.8E-11 68.1 9.1 36 91-129 559-594 (680)
94 2z7x_B TOLL-like receptor 1, v 98.5 4E-07 1.4E-11 66.7 7.9 104 4-129 21-125 (520)
95 4ecn_A Leucine-rich repeat pro 98.5 4.8E-07 1.6E-11 70.6 8.7 38 87-130 801-838 (876)
96 2ft3_A Biglycan; proteoglycan, 98.5 4.2E-07 1.4E-11 63.1 7.6 13 58-70 239-251 (332)
97 3rgz_A Protein brassinosteroid 98.5 7.4E-07 2.5E-11 68.5 9.0 15 3-17 393-407 (768)
98 3rgz_A Protein brassinosteroid 98.5 4.9E-07 1.7E-11 69.4 8.0 117 2-130 416-549 (768)
99 1ogq_A PGIP-2, polygalacturona 98.5 7.3E-07 2.5E-11 61.6 8.2 59 5-70 51-111 (313)
100 3a79_B TLR6, VLRB.59, TOLL-lik 98.5 7.1E-07 2.4E-11 66.1 8.6 112 2-130 375-508 (562)
101 4eco_A Uncharacterized protein 98.5 2E-07 6.9E-12 70.2 5.7 119 2-129 204-340 (636)
102 1ogq_A PGIP-2, polygalacturona 98.5 7.1E-07 2.4E-11 61.7 8.0 85 2-102 74-159 (313)
103 3g39_A Variable lymphocyte rec 98.5 1.2E-06 4E-11 55.5 8.4 103 6-130 11-113 (170)
104 1wwl_A Monocyte differentiatio 98.5 1.9E-07 6.6E-12 64.4 4.9 34 92-130 274-307 (312)
105 3j0a_A TOLL-like receptor 5; m 98.4 2.5E-06 8.6E-11 66.2 11.4 107 4-129 266-372 (844)
106 4ay9_X Follicle-stimulating ho 98.4 1.2E-06 4.3E-11 61.3 8.7 37 90-132 200-236 (350)
107 2r9u_A Variable lymphocyte rec 98.4 1.6E-06 5.3E-11 55.2 8.5 102 7-130 15-116 (174)
108 1ds9_A Outer arm dynein; leuci 98.4 1.2E-08 4.1E-13 66.1 -1.5 103 3-129 47-150 (198)
109 2p1m_B Transport inhibitor res 98.4 2.2E-07 7.5E-12 68.9 5.0 13 91-103 288-300 (594)
110 4glp_A Monocyte differentiatio 98.4 1.5E-07 5E-12 64.9 3.6 15 3-17 116-130 (310)
111 1w8a_A SLIT protein; signaling 98.4 1.5E-06 5E-11 56.0 8.0 86 2-103 52-137 (192)
112 3sb4_A Hypothetical leucine ri 98.4 3.3E-06 1.1E-10 58.6 10.2 103 3-126 225-328 (329)
113 4ecn_A Leucine-rich repeat pro 98.4 1.3E-06 4.4E-11 68.2 8.9 82 33-130 729-817 (876)
114 1dce_A Protein (RAB geranylger 98.4 8.5E-07 2.9E-11 66.2 7.5 101 5-129 442-543 (567)
115 4glp_A Monocyte differentiatio 98.4 1.5E-07 5E-12 64.9 3.2 33 92-129 272-304 (310)
116 1o6v_A Internalin A; bacterial 98.4 1.3E-06 4.3E-11 63.4 7.8 57 2-70 263-319 (466)
117 1wwl_A Monocyte differentiatio 98.4 1.2E-06 4E-11 60.5 7.3 63 2-71 93-160 (312)
118 3ogk_B Coronatine-insensitive 98.4 5E-08 1.7E-12 72.4 -0.1 39 90-130 486-524 (592)
119 2p1m_B Transport inhibitor res 98.3 6.8E-08 2.3E-12 71.6 0.4 12 3-14 65-76 (594)
120 2wfh_A SLIT homolog 2 protein 98.3 1.7E-06 5.8E-11 55.8 6.9 86 2-103 52-137 (193)
121 2r9u_A Variable lymphocyte rec 98.3 1.6E-06 5.5E-11 55.1 6.7 85 3-103 32-116 (174)
122 3g39_A Variable lymphocyte rec 98.3 1.9E-06 6.4E-11 54.5 6.8 85 3-103 29-113 (170)
123 2o6r_A Variable lymphocyte rec 98.3 2.5E-06 8.4E-11 54.0 6.8 86 2-103 50-135 (177)
124 3bz5_A Internalin-J, INLJ; leu 98.3 3E-06 1E-10 61.6 8.1 33 3-42 63-95 (457)
125 2ifg_A High affinity nerve gro 98.3 6.8E-06 2.3E-10 57.3 9.3 101 9-130 13-114 (347)
126 3bz5_A Internalin-J, INLJ; leu 98.3 2.7E-06 9.1E-11 61.9 7.1 34 2-42 210-243 (457)
127 1dce_A Protein (RAB geranylger 98.2 2.3E-06 7.9E-11 63.9 6.7 105 2-125 461-566 (567)
128 3g06_A SSPH2 (leucine-rich rep 98.2 6E-06 2.1E-10 62.3 7.5 104 3-130 180-295 (622)
129 1jl5_A Outer protein YOPM; leu 98.2 8.5E-06 2.9E-10 59.1 8.1 16 4-19 131-146 (454)
130 3ogk_B Coronatine-insensitive 98.1 9.3E-07 3.2E-11 65.5 2.6 86 31-128 462-547 (592)
131 3g06_A SSPH2 (leucine-rich rep 98.1 1.6E-05 5.6E-10 60.0 8.7 51 4-70 61-111 (622)
132 1jl5_A Outer protein YOPM; leu 98.0 3.1E-05 1.1E-09 56.2 7.8 32 33-70 216-247 (454)
133 4b8c_D Glucose-repressible alc 97.9 9.9E-06 3.4E-10 62.1 5.0 83 2-103 245-327 (727)
134 2ifg_A High affinity nerve gro 97.9 5.1E-05 1.7E-09 52.8 7.3 83 3-102 30-113 (347)
135 3cvr_A Invasion plasmid antige 97.9 5.4E-05 1.8E-09 56.6 7.6 11 119-129 180-190 (571)
136 2ca6_A RAN GTPase-activating p 97.8 2.6E-06 9E-11 60.2 -0.1 95 3-103 31-133 (386)
137 3cvr_A Invasion plasmid antige 97.8 5.2E-05 1.8E-09 56.7 6.7 32 95-130 210-241 (571)
138 2ca6_A RAN GTPase-activating p 97.8 2.5E-06 8.5E-11 60.4 -0.4 37 91-130 273-314 (386)
139 2ra8_A Uncharacterized protein 97.8 9.4E-06 3.2E-10 57.5 2.3 13 2-14 170-182 (362)
140 2ra8_A Uncharacterized protein 97.7 0.00011 3.9E-09 51.9 6.8 61 3-70 138-203 (362)
141 3sb4_A Hypothetical leucine ri 97.6 0.00067 2.3E-08 46.9 9.9 34 3-41 100-133 (329)
142 1ds9_A Outer arm dynein; leuci 97.6 2.3E-06 7.8E-11 55.3 -2.5 103 3-126 69-181 (198)
143 1z7x_W Ribonuclease inhibitor; 97.6 7E-06 2.4E-10 59.1 -0.9 12 118-129 169-180 (461)
144 3goz_A Leucine-rich repeat-con 97.5 2.4E-05 8.1E-10 55.0 1.0 66 5-71 23-91 (362)
145 3goz_A Leucine-rich repeat-con 97.5 1E-05 3.6E-10 56.8 -0.8 13 5-17 52-64 (362)
146 1z7x_W Ribonuclease inhibitor; 97.5 6.3E-06 2.2E-10 59.3 -2.4 14 3-16 112-125 (461)
147 3rw6_A Nuclear RNA export fact 97.4 4.7E-05 1.6E-09 51.7 1.5 38 30-70 168-206 (267)
148 4fdw_A Leucine rich hypothetic 97.3 0.0031 1.1E-07 45.1 9.7 56 4-69 180-235 (401)
149 3un9_A NLR family member X1; l 96.7 4.8E-05 1.7E-09 53.9 -3.9 40 90-130 181-222 (372)
150 3un9_A NLR family member X1; l 96.7 7.1E-05 2.4E-09 53.0 -3.0 40 90-130 209-250 (372)
151 4fdw_A Leucine rich hypothetic 96.7 0.029 1E-06 40.0 10.5 33 91-128 322-354 (401)
152 4h09_A Hypothetical leucine ri 96.3 0.048 1.6E-06 38.2 9.5 32 91-126 309-340 (379)
153 4gt6_A Cell surface protein; l 96.1 0.061 2.1E-06 38.0 9.2 80 31-128 287-366 (394)
154 4fs7_A Uncharacterized protein 95.8 0.062 2.1E-06 37.9 8.2 79 30-126 295-373 (394)
155 1io0_A Tropomodulin; LRR prote 95.7 0.00085 2.9E-08 42.8 -1.6 122 3-130 35-162 (185)
156 4fs7_A Uncharacterized protein 95.3 0.15 5.2E-06 35.9 8.8 76 30-124 318-393 (394)
157 3rw6_A Nuclear RNA export fact 93.8 0.052 1.8E-06 36.8 3.4 63 58-130 168-231 (267)
158 4gt6_A Cell surface protein; l 93.6 0.69 2.3E-05 32.5 9.0 78 31-126 264-341 (394)
159 1io0_A Tropomodulin; LRR prote 93.2 0.007 2.4E-07 38.5 -1.7 95 3-102 64-161 (185)
160 4h09_A Hypothetical leucine ri 92.2 2.1 7E-05 29.8 10.7 33 91-126 285-317 (379)
161 3rfe_A Platelet glycoprotein I 90.6 0.21 7.3E-06 29.8 2.9 36 32-71 31-66 (130)
162 3rfe_A Platelet glycoprotein I 87.6 0.57 1.9E-05 27.9 3.3 36 60-103 31-66 (130)
163 2lz0_A Uncharacterized protein 55.8 14 0.00049 20.7 3.3 35 30-69 18-52 (100)
164 1pgv_A TMD-1, tropomodulin TMD 22.3 20 0.0007 22.9 0.2 93 4-102 41-136 (197)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.16 E-value=2.2e-10 Score=79.91 Aligned_cols=85 Identities=22% Similarity=0.285 Sum_probs=48.8
Q ss_pred CCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeeccccccccccc
Q 036006 31 VQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFCT 110 (133)
Q Consensus 31 l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~ 110 (133)
+++|++|+++++ .++.+++ .+. .+++|+.|++++|.....++ .....+++|+.|++++|..+..++.
T Consensus 205 l~~L~~L~L~~N-~l~~l~~--~l~--~l~~L~~L~Ls~n~~~~~~p--------~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 205 LQNLKSLKIRNS-PLSALGP--AIH--HLPKLEELDLRGCTALRNYP--------PIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp CTTCCEEEEESS-CCCCCCG--GGG--GCTTCCEEECTTCTTCCBCC--------CCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred CCCCCEEEccCC-CCCcCch--hhc--cCCCCCEEECcCCcchhhhH--------HHhcCCCCCCEEECCCCCchhhcch
Confidence 455555555554 3333321 233 55666666666554333321 1223477788888887776666665
Q ss_pred CcccccCCCCccEEEEccCCC
Q 036006 111 RDVHIIKFPSLRKLWISRCPE 131 (133)
Q Consensus 111 ~~~~~~~~~~L~~L~i~~c~~ 131 (133)
.. ..+++|++|++.+|+.
T Consensus 272 ~~---~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 272 DI---HRLTQLEKLDLRGCVN 289 (328)
T ss_dssp TG---GGCTTCCEEECTTCTT
T ss_pred hh---hcCCCCCEEeCCCCCc
Confidence 43 2678888888887764
No 2
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.07 E-value=9.6e-11 Score=75.01 Aligned_cols=92 Identities=9% Similarity=0.118 Sum_probs=57.2
Q ss_pred CccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeecccccccccccCc
Q 036006 33 NLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFCTRD 112 (133)
Q Consensus 33 ~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~ 112 (133)
+|+.|++++|. +++.+- ..+. .+++|+.|.+++|..++......-... ....++|++|++++|+++++-....
T Consensus 62 ~L~~LDLs~~~-Itd~GL-~~L~--~~~~L~~L~L~~C~~ItD~gL~~L~~~---~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGF-DHME--GLQYVEKIRLCKCHYIEDGCLERLSQL---ENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CEEEEEEESCC-CCGGGG-GGGT--TCSCCCEEEEESCTTCCHHHHHHHHTC---HHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred eEeEEeCcCCC-ccHHHH-HHhc--CCCCCCEEEeCCCCccCHHHHHHHHhc---ccccCCCCEEEcCCCCcCCHHHHHH
Confidence 57888888886 666522 2223 778888888888876654311100000 0012468888888888877755444
Q ss_pred ccccCCCCccEEEEccCCCCC
Q 036006 113 VHIIKFPSLRKLWISRCPEFM 133 (133)
Q Consensus 113 ~~~~~~~~L~~L~i~~c~~l~ 133 (133)
+ ..+++|++|.+.+|++++
T Consensus 135 L--~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 135 L--HHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp G--GGCTTCCEEEEESCTTCC
T ss_pred H--hcCCCCCEEECCCCCCCC
Confidence 4 257888888888888764
No 3
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.05 E-value=2.6e-09 Score=71.02 Aligned_cols=66 Identities=20% Similarity=0.172 Sum_probs=41.6
Q ss_pred ccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEc
Q 036006 5 KLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEII 77 (133)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~ 77 (133)
+|++|++++++++.+....+. .+++|++|+++++..++.+++ ..+. .+++|+.|++.+|..++.+.
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~----~l~~L~~L~l~~n~~l~~i~~-~~f~--~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFS----NLPNISRIYVSIDVTLQQLES-HSFY--NLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTT----TCTTCCEEEEECCSSCCEECT-TTEE--SCTTCCEEEEEEETTCCEEC
T ss_pred cccEEEEeCCcceEECHHHcc----CCCCCcEEeCCCCCCcceeCH-hHcC--CCcCCcEEECCCCCCeeEcC
Confidence 577777777776666443332 467777777777655666643 2334 66777777777655566654
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.04 E-value=8.8e-10 Score=76.86 Aligned_cols=105 Identities=20% Similarity=0.263 Sum_probs=77.4
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
+++|++|+++++.+..++. ....+++|++|++++|.....++ ..+. .+++|+.|++.+|.....++.
T Consensus 205 l~~L~~L~L~~N~l~~l~~-----~l~~l~~L~~L~Ls~n~~~~~~p--~~~~--~l~~L~~L~L~~n~~~~~~p~---- 271 (328)
T 4fcg_A 205 LQNLKSLKIRNSPLSALGP-----AIHHLPKLEELDLRGCTALRNYP--PIFG--GRAPLKRLILKDCSNLLTLPL---- 271 (328)
T ss_dssp CTTCCEEEEESSCCCCCCG-----GGGGCTTCCEEECTTCTTCCBCC--CCTT--CCCCCCEEECTTCTTCCBCCT----
T ss_pred CCCCCEEEccCCCCCcCch-----hhccCCCCCEEECcCCcchhhhH--HHhc--CCCCCCEEECCCCCchhhcch----
Confidence 4566666666665554422 12258999999999998777764 3455 899999999999987666532
Q ss_pred ccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEc
Q 036006 83 KRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWIS 127 (133)
Q Consensus 83 ~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~ 127 (133)
.+..+++|+.|++++|+.+..+|.... .+++|+.+.+.
T Consensus 272 ----~~~~l~~L~~L~L~~n~~~~~iP~~l~---~L~~L~~l~l~ 309 (328)
T 4fcg_A 272 ----DIHRLTQLEKLDLRGCVNLSRLPSLIA---QLPANCIILVP 309 (328)
T ss_dssp ----TGGGCTTCCEEECTTCTTCCCCCGGGG---GSCTTCEEECC
T ss_pred ----hhhcCCCCCEEeCCCCCchhhccHHHh---hccCceEEeCC
Confidence 233689999999999999998887642 67888888764
No 5
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.03 E-value=8.6e-11 Score=75.25 Aligned_cols=91 Identities=20% Similarity=0.278 Sum_probs=66.8
Q ss_pred ccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccc----cCcccEEEEeCCCCceEEcccc
Q 036006 5 KLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSI----FVRLQHLEIWGCPVLEEIIIVD 80 (133)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~----l~~L~~L~i~~c~~l~~i~~~~ 80 (133)
+|++|++++|.+++. +.... ..+++|++|++++|..+++.+ ...++. .++|++|++++|++++.....
T Consensus 62 ~L~~LDLs~~~Itd~---GL~~L-~~~~~L~~L~L~~C~~ItD~g---L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~- 133 (176)
T 3e4g_A 62 KIQAIDATDSCIMSI---GFDHM-EGLQYVEKIRLCKCHYIEDGC---LERLSQLENLQKSMLEMEIISCGNVTDKGII- 133 (176)
T ss_dssp CEEEEEEESCCCCGG---GGGGG-TTCSCCCEEEEESCTTCCHHH---HHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-
T ss_pred eEeEEeCcCCCccHH---HHHHh-cCCCCCCEEEeCCCCccCHHH---HHHHHhcccccCCCCEEEcCCCCcCCHHHHH-
Confidence 489999999975543 22222 269999999999999999863 222213 358999999999988764221
Q ss_pred ccccccccccCCCccEEeecccccccccc
Q 036006 81 QEKRNNNIVMFPQLQYLKMYDLKKLTSFC 109 (133)
Q Consensus 81 ~~~~~~~~~~~~~L~~L~i~~c~~L~~l~ 109 (133)
.+..+++|++|++++|+++++..
T Consensus 134 ------~L~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 134 ------ALHHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp ------HGGGCTTCCEEEEESCTTCCCHH
T ss_pred ------HHhcCCCCCEEECCCCCCCCchH
Confidence 22358999999999999998753
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.02 E-value=2e-09 Score=71.47 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=26.8
Q ss_pred ccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 89 VMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 89 ~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
..+++|+.|+++++ +++.++...+ ..+++|+.|.+.+.+
T Consensus 132 ~~l~~L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 132 ERLTHLTHLALDQN-QLKSIPHGAF--DRLSSLTHAYLFGNP 170 (229)
T ss_dssp GGCTTCSEEECCSS-CCCCCCTTTT--TTCTTCCEEECTTSC
T ss_pred ccCCCCCEEECCCC-cCCccCHHHH--hCCCCCCEEEeeCCC
Confidence 35677888888776 5676665443 367888888887654
No 7
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.02 E-value=2.6e-09 Score=77.27 Aligned_cols=108 Identities=24% Similarity=0.285 Sum_probs=45.9
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
+++|++|+++++.++.+....+. .+++|++|+++++ +++.+++ ..+. .+++|+.|+++++. ++.+...
T Consensus 98 l~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~~-~~~~--~l~~L~~L~L~~N~-l~~~~~~--- 165 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIEVGAFN----GLASLNTLELFDN-WLTVIPS-GAFE--YLSKLRELWLRNNP-IESIPSY--- 165 (452)
T ss_dssp CTTCCEEECCSSCCCEECTTTTT----TCTTCCEEECCSS-CCSBCCT-TTSS--SCTTCCEEECCSCC-CCEECTT---
T ss_pred CCCCCEEECCCCccCCcChhhcc----CcccCCEEECCCC-cCCccCh-hhhc--ccCCCCEEECCCCC-cceeCHh---
Confidence 34444455544444433222211 2445555555543 2333321 1223 45555555555443 3333211
Q ss_pred ccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEcc
Q 036006 83 KRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISR 128 (133)
Q Consensus 83 ~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~ 128 (133)
....+++|+.|+++++..+..++...+ ..+++|++|++.+
T Consensus 166 ----~~~~l~~L~~L~l~~~~~l~~i~~~~~--~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 166 ----AFNRVPSLMRLDLGELKKLEYISEGAF--EGLFNLKYLNLGM 205 (452)
T ss_dssp ----TTTTCTTCCEEECCCCTTCCEECTTTT--TTCTTCCEEECTT
T ss_pred ----HHhcCCcccEEeCCCCCCccccChhhc--cCCCCCCEEECCC
Confidence 111345555555555555555444332 2344444444443
No 8
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.02 E-value=2.7e-09 Score=70.45 Aligned_cols=115 Identities=17% Similarity=0.245 Sum_probs=56.3
Q ss_pred CccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc-
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE- 82 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~- 82 (133)
++|+.|++.++.++.+....+. .+++|++|+++++ +++.+.+ ..+. .+++|+.|+++++. ++.+......
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~----~l~~L~~L~Ls~N-~i~~~~~-~~~~--~l~~L~~L~Ls~N~-l~~l~~~~f~~ 102 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFS----PYKKLRRIDLSNN-QISELAP-DAFQ--GLRSLNSLVLYGNK-ITELPKSLFEG 102 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSST----TCTTCCEEECCSS-CCCEECT-TTTT--TCSSCCEEECCSSC-CCCCCTTTTTT
T ss_pred cCCCEEECCCCcCCCcCHhHhh----CCCCCCEEECCCC-cCCCcCH-HHhh--CCcCCCEEECCCCc-CCccCHhHccC
Confidence 3566666666655555332222 3555566655553 3444422 1223 45555555555442 3332211000
Q ss_pred ----------------ccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 83 ----------------KRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 83 ----------------~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
..+.....+++|+.|+++++ +++.++...+ ..+++|++|++.+.+
T Consensus 103 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 103 LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTF--SPLRAIQTMHLAQNP 163 (220)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTT--TTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHH--hCCCCCCEEEeCCCC
Confidence 00112224667777777765 4666655443 256777887776654
No 9
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.01 E-value=2.7e-09 Score=76.89 Aligned_cols=60 Identities=23% Similarity=0.310 Sum_probs=27.9
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCC
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGC 70 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c 70 (133)
+++|++|+++++.+..+....+. .+++|++|+++++ +++.+++ ..+. .+++|+.|+++++
T Consensus 87 l~~L~~L~Ls~n~i~~i~~~~~~----~l~~L~~L~L~~n-~l~~~~~-~~~~--~l~~L~~L~L~~N 146 (440)
T 3zyj_A 87 LRHLEILQLSRNHIRTIEIGAFN----GLANLNTLELFDN-RLTTIPN-GAFV--YLSKLKELWLRNN 146 (440)
T ss_dssp CSSCCEEECCSSCCCEECGGGGT----TCSSCCEEECCSS-CCSSCCT-TTSC--SCSSCCEEECCSC
T ss_pred CCCCCEEECCCCcCCccChhhcc----CCccCCEEECCCC-cCCeeCH-hHhh--ccccCceeeCCCC
Confidence 34555555555544444322221 3455555555553 3444422 1223 4555555555544
No 10
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.01 E-value=1.4e-09 Score=72.40 Aligned_cols=62 Identities=16% Similarity=0.285 Sum_probs=45.1
Q ss_pred CCCccceeeeccce-eeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCC
Q 036006 2 ALPKLENLELRSIN-VERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGC 70 (133)
Q Consensus 2 ~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c 70 (133)
.+++|++|++++++ ++.+....+. .+++|++|++++|.+++.+++ ..+. .+++|+.|++.++
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~~~~f~----~l~~L~~L~l~~~n~l~~i~~-~~f~--~l~~L~~L~l~~n 115 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLESHSFY----NLSKVTHIEIRNTRNLTYIDP-DALK--ELPLLKFLGIFNT 115 (239)
T ss_dssp TCTTCCEEEEECCSSCCEECTTTEE----SCTTCCEEEEEEETTCCEECT-TSEE--CCTTCCEEEEEEE
T ss_pred CCCCCcEEeCCCCCCcceeCHhHcC----CCcCCcEEECCCCCCeeEcCH-HHhC--CCCCCCEEeCCCC
Confidence 36789999999884 8877544333 578899999988778888743 2344 6778888887765
No 11
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.99 E-value=3.5e-09 Score=69.04 Aligned_cols=38 Identities=26% Similarity=0.475 Sum_probs=25.6
Q ss_pred cCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 90 MFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 90 ~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
.+++|+.|+++++ +++.++...+ ..+++|++|++.+++
T Consensus 122 ~l~~L~~L~l~~N-~l~~~~~~~~--~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 122 KLTQLKDLRLYQN-QLKSVPDGVF--DRLTSLQYIWLHDNP 159 (208)
T ss_dssp TCTTCCEEECCSS-CCSCCCTTTT--TTCTTCCEEECCSCC
T ss_pred cCCcCCEEECCCC-ccceeCHHHh--ccCCCccEEEecCCC
Confidence 4677888888776 4666655433 357888888887753
No 12
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.99 E-value=3.3e-09 Score=78.85 Aligned_cols=105 Identities=17% Similarity=0.249 Sum_probs=60.1
Q ss_pred ccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccccc
Q 036006 5 KLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEKR 84 (133)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~ 84 (133)
++++|++++++++.+.+..+. .+++|++|+++++ +++.+++ ..+. .+++|++|+++++. ++.++...
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~----~l~~L~~L~Ls~N-~i~~i~~-~~f~--~L~~L~~L~Ls~N~-l~~l~~~~---- 119 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFF----SFPELQVLDLSRC-EIQTIED-GAYQ--SLSHLSTLILTGNP-IQSLALGA---- 119 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTT----TCTTCCEEECTTC-CCCEECT-TTTT--TCTTCCEEECTTCC-CCEECGGG----
T ss_pred CCCEEEeeCCCCCCCCHHHHh----CCCCCCEEECCCC-cCCCcCh-hHhc--CCCCCCEEEccCCc-CCCCCHHH----
Confidence 577888887777777544433 4777888888776 5666643 2344 67777777777764 66654221
Q ss_pred ccccccCCCccEEeecccccccccccCcccccCCCCccEEEEcc
Q 036006 85 NNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISR 128 (133)
Q Consensus 85 ~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~ 128 (133)
...+++|++|+++++ +++.++...+ ..+++|++|++.+
T Consensus 120 ---f~~L~~L~~L~Ls~N-~l~~l~~~~~--~~L~~L~~L~Ls~ 157 (635)
T 4g8a_A 120 ---FSGLSSLQKLVAVET-NLASLENFPI--GHLKTLKELNVAH 157 (635)
T ss_dssp ---GTTCTTCCEEECTTS-CCCCSTTCCC--TTCTTCCEEECCS
T ss_pred ---hcCCCCCCEEECCCC-cCCCCChhhh--hcCcccCeecccc
Confidence 113455555555554 3444443322 2444555554443
No 13
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.98 E-value=3.3e-09 Score=72.00 Aligned_cols=116 Identities=20% Similarity=0.252 Sum_probs=56.9
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
+++|++|+++++.++.+....+. .+++|++|+++++ +++.+++ ..+. .+++|+.|.++++. ++.+......
T Consensus 84 l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~~-~~~~--~l~~L~~L~L~~n~-l~~~~~~~~~ 154 (272)
T 3rfs_A 84 LTNLTYLILTGNQLQSLPNGVFD----KLTNLKELVLVEN-QLQSLPD-GVFD--KLTNLTYLNLAHNQ-LQSLPKGVFD 154 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTT----TCTTCCEEECTTS-CCCCCCT-TTTT--TCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred CCCCCEEECCCCccCccChhHhc----CCcCCCEEECCCC-cCCccCH-HHhc--cCCCCCEEECCCCc-cCccCHHHhc
Confidence 56677777776655554332211 3455555555554 3333321 1223 44555555554442 3322110000
Q ss_pred -----------------ccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 83 -----------------KRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 83 -----------------~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
..+.....+++|+.|+++++ +++.++...+ ..+++|++|++.+++
T Consensus 155 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 155 KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVF--DRLTSLQYIWLHDNP 216 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTT--TTCTTCCEEECCSSC
T ss_pred cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC-cCCccCHHHH--hCCcCCCEEEccCCC
Confidence 00111224667777777766 4665554433 356788888877654
No 14
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.98 E-value=4.6e-09 Score=69.30 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=24.7
Q ss_pred cCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 90 MFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 90 ~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
.+++|+.|+++++ +++.+....+ ..+++|++|++.+.+
T Consensus 127 ~l~~L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 127 GLSSVRLLSLYDN-QITTVAPGAF--DTLHSLSTLNLLANP 164 (220)
T ss_dssp TCTTCSEEECTTS-CCCCBCTTTT--TTCTTCCEEECCSCC
T ss_pred CCccCCEEECCCC-cCCEECHHHh--cCCCCCCEEEecCcC
Confidence 4677777777765 4666644443 367788888777654
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.96 E-value=6e-09 Score=75.04 Aligned_cols=85 Identities=20% Similarity=0.312 Sum_probs=51.0
Q ss_pred CCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeeccccccccccc
Q 036006 31 VQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFCT 110 (133)
Q Consensus 31 l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~ 110 (133)
+++|++|+++++ .++.+.+ ..+. .+++|++|+++++. +..+. +.....+++|+.|+++++ +++.++.
T Consensus 322 l~~L~~L~Ls~N-~l~~~~~-~~~~--~l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~~~~ 388 (455)
T 3v47_A 322 LTHLLKLNLSQN-FLGSIDS-RMFE--NLDKLEVLDLSYNH-IRALG-------DQSFLGLPNLKELALDTN-QLKSVPD 388 (455)
T ss_dssp CTTCCEEECCSS-CCCEECG-GGGT--TCTTCCEEECCSSC-CCEEC-------TTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred cccCCEEECCCC-ccCCcCh-hHhc--CcccCCEEECCCCc-ccccC-------hhhccccccccEEECCCC-ccccCCH
Confidence 455666666554 3344322 2233 55666666666653 44432 122335788889998886 5777776
Q ss_pred CcccccCCCCccEEEEccCC
Q 036006 111 RDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 111 ~~~~~~~~~~L~~L~i~~c~ 130 (133)
..+ ..+++|++|++.+++
T Consensus 389 ~~~--~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 389 GIF--DRLTSLQKIWLHTNP 406 (455)
T ss_dssp TTT--TTCTTCCEEECCSSC
T ss_pred hHh--ccCCcccEEEccCCC
Confidence 554 367899999987764
No 16
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.96 E-value=4.4e-09 Score=71.26 Aligned_cols=116 Identities=17% Similarity=0.173 Sum_probs=62.2
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
+++|++|+++++.+..+....+. .+++|++|.++++ .++.+++ ..+. .+++|+.|+++++. ++.+......
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~l~~n-~l~~~~~-~~~~--~l~~L~~L~Ls~n~-l~~~~~~~~~ 154 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFD----QLVNLAELRLDRN-QLKSLPP-RVFD--SLTKLTYLSLGYNE-LQSLPKGVFD 154 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTT----TCSSCCEEECCSS-CCCCCCT-TTTT--TCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred CCCCCEEECCCCcCCcCCHhHcc----cccCCCEEECCCC-ccCeeCH-HHhC--cCcCCCEEECCCCc-CCccCHhHcc
Confidence 56788888877766655433222 3566666666653 3444422 1223 45555555555442 2222110000
Q ss_pred -----------------ccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 83 -----------------KRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 83 -----------------~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
..+.....+++|+.|+++++ +++.++...+ ..+++|+.|.+.++|
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAF--DSLEKLKMLQLQENP 216 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTT--TTCTTCCEEECCSSC
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHh--ccccCCCEEEecCCC
Confidence 00111224677888888776 5776666544 367888888887654
No 17
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.96 E-value=4.7e-09 Score=70.39 Aligned_cols=116 Identities=17% Similarity=0.132 Sum_probs=60.0
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
+++|++|+++++.++.+....+. .+++|++|+++++ +++.+++ ..+. .+++|++|+++++. ++.+......
T Consensus 58 l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~~-~~~~--~l~~L~~L~L~~N~-l~~~~~~~~~ 128 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTLSAGVFD----DLTELGTLGLANN-QLASLPL-GVFD--HLTQLDKLYLGGNQ-LKSLPSGVFD 128 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTT----TCTTCCEEECTTS-CCCCCCT-TTTT--TCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred cccCCEEECCCCcCCccCHhHhc----cCCcCCEEECCCC-cccccCh-hHhc--ccCCCCEEEcCCCc-CCCcChhHhc
Confidence 56777777777766655433222 3566666666654 3444422 2233 55566666555442 3332211000
Q ss_pred -----------------ccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 83 -----------------KRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 83 -----------------~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
..+.....+++|+.|+++++ +++.++...+ ..+++|++|.+.+++
T Consensus 129 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAF--DRLGKLQTITLFGNQ 190 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTT--TTCTTCCEEECCSCC
T ss_pred cCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHH--hCCCCCCEEEeeCCc
Confidence 00111224567777777665 4555555443 256777777776654
No 18
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.95 E-value=6.2e-09 Score=70.87 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=17.4
Q ss_pred CCCccEEeecccccccccccCcccccCCCCccEEEEccC
Q 036006 91 FPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 91 ~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c 129 (133)
+++|+.|+++++ +++.++...+ ..+++|++|.+.++
T Consensus 152 l~~L~~L~l~~n-~l~~~~~~~~--~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 152 LGNLTHLFLHGN-RISSVPERAF--RGLHSLDRLLLHQN 187 (285)
T ss_dssp CTTCCEEECCSS-CCCEECTTTT--TTCTTCCEEECCSS
T ss_pred CCCccEEECCCC-cccccCHHHh--cCccccCEEECCCC
Confidence 445555555544 3444443322 24556666665554
No 19
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.95 E-value=5e-09 Score=71.10 Aligned_cols=64 Identities=23% Similarity=0.277 Sum_probs=47.9
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEE
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEI 76 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i 76 (133)
.+++|++|+++++.++.+. . ...+++|++|.++++ .++.+++ ..+. .+++|++|++.++. ++.+
T Consensus 61 ~l~~L~~L~l~~n~l~~~~-----~-l~~l~~L~~L~L~~n-~l~~~~~-~~~~--~l~~L~~L~L~~n~-l~~~ 124 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHDIS-----A-LKELTNLTYLILTGN-QLQSLPN-GVFD--KLTNLKELVLVENQ-LQSL 124 (272)
T ss_dssp GCTTCCEEECTTSCCCCCG-----G-GTTCTTCCEEECTTS-CCCCCCT-TTTT--TCTTCCEEECTTSC-CCCC
T ss_pred cCCCCcEEECCCCCCCCch-----h-hcCCCCCCEEECCCC-ccCccCh-hHhc--CCcCCCEEECCCCc-CCcc
Confidence 4789999999999777652 1 125899999999997 5676643 3345 88999999998874 5544
No 20
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.94 E-value=5.4e-09 Score=70.09 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=71.5
Q ss_pred CccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc-
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE- 82 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~- 82 (133)
+++++|+++++.+..+....+. .+++|++|+++++ .++.+.+ ..+. .+++|+.|+++++. ++.+......
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~~-~~~~--~l~~L~~L~L~~n~-l~~~~~~~~~~ 105 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFR----GLTKLTWLNLDYN-QLQTLSA-GVFD--DLTELGTLGLANNQ-LASLPLGVFDH 105 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTT----TCTTCCEEECTTS-CCCCCCT-TTTT--TCTTCCEEECTTSC-CCCCCTTTTTT
T ss_pred CCCCEEEccCCCcCccCHhHhc----CcccCCEEECCCC-cCCccCH-hHhc--cCCcCCEEECCCCc-ccccChhHhcc
Confidence 5799999999988877544333 5899999999995 6777643 3345 88999999998764 5444321100
Q ss_pred -------------c---cccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccC
Q 036006 83 -------------K---RNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 83 -------------~---~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c 129 (133)
. .+.....+++|+.|+++++ +++.++...+ ..+++|++|++.++
T Consensus 106 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~--~~l~~L~~L~L~~N 165 (251)
T 3m19_A 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAF--DKLTNLQTLSLSTN 165 (251)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT--TTCTTCCEEECCSS
T ss_pred cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHc--CcCcCCCEEECCCC
Confidence 0 0011223556666666655 4555554333 25677777777655
No 21
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.94 E-value=3.3e-09 Score=68.73 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=29.9
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCC
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGC 70 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c 70 (133)
+++|++|++.+|.++.+. . ...+++|++|.++++ .++...+ ..+. .+++|+.|.++++
T Consensus 65 l~~L~~L~l~~n~~~~~~-----~-l~~l~~L~~L~l~~n-~l~~~~~-~~l~--~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 65 AHNIKDLTINNIHATNYN-----P-ISGLSNLERLRIMGK-DVTSDKI-PNLS--GLTSLTLLDISHS 122 (197)
T ss_dssp CTTCSEEEEESCCCSCCG-----G-GTTCTTCCEEEEECT-TCBGGGS-CCCT--TCTTCCEEECCSS
T ss_pred CCCCCEEEccCCCCCcch-----h-hhcCCCCCEEEeECC-ccCcccC-hhhc--CCCCCCEEEecCC
Confidence 567777777777444331 1 113566666666664 3333211 2233 5555666655554
No 22
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.93 E-value=7e-09 Score=74.78 Aligned_cols=35 Identities=26% Similarity=0.211 Sum_probs=18.5
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEec
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYK 41 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~ 41 (133)
+++|++|+++++.++.+....+. .+++|++|++++
T Consensus 111 l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~ 145 (440)
T 3zyj_A 111 LANLNTLELFDNRLTTIPNGAFV----YLSKLKELWLRN 145 (440)
T ss_dssp CSSCCEEECCSSCCSSCCTTTSC----SCSSCCEEECCS
T ss_pred CccCCEEECCCCcCCeeCHhHhh----ccccCceeeCCC
Confidence 46667777766665555332221 345555555554
No 23
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.93 E-value=5.8e-09 Score=65.78 Aligned_cols=58 Identities=22% Similarity=0.212 Sum_probs=33.8
Q ss_pred CCccceeeeccceee--eecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCC
Q 036006 3 LPKLENLELRSINVE--RIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCP 71 (133)
Q Consensus 3 l~~L~~L~l~~~~l~--~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~ 71 (133)
.++|++|++.+|.+. .++.. ...+++|++|.++++. ++.+ ..+. .+++|+.|+++++.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~-----~~~l~~L~~L~l~~n~-l~~~---~~~~--~l~~L~~L~Ls~N~ 82 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGL-----TAEFVNLEFLSLINVG-LISV---SNLP--KLPKLKKLELSENR 82 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSC-----CGGGGGCCEEEEESSC-CCCC---SSCC--CCSSCCEEEEESCC
T ss_pred cccCCEEECCCCCCChhhHHHH-----HHhCCCCCEEeCcCCC-CCCh---hhhc--cCCCCCEEECcCCc
Confidence 456777777777655 34211 1246777777777653 5544 2334 56666666666553
No 24
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.93 E-value=8.4e-09 Score=65.61 Aligned_cols=109 Identities=19% Similarity=0.247 Sum_probs=79.5
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
+++|++|++.++.++.+....+. .+++|++|+++++ +++.+++ ..+. .+++|+.|+++++. ++.+...
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~----~l~~L~~L~l~~n-~l~~~~~-~~~~--~l~~L~~L~l~~N~-l~~~~~~--- 94 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFD----KLTQLTKLSLSQN-QIQSLPD-GVFD--KLTKLTILYLHENK-LQSLPNG--- 94 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTT----TCTTCSEEECCSS-CCCCCCT-TTTT--TCTTCCEEECCSSC-CCCCCTT---
T ss_pred CCCCcEEEeCCCcccEeCHHHhc----CcccccEEECCCC-cceEeCh-hHcc--CCCccCEEECCCCC-ccccCHH---
Confidence 46889999999877766433322 5789999999986 6776643 3345 78999999998874 6654321
Q ss_pred ccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 83 KRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 83 ~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
....+++|+.|+++++ +++.++...+ ..+++|++|++.+++
T Consensus 95 ----~~~~l~~L~~L~l~~N-~l~~~~~~~~--~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 95 ----VFDKLTQLKELALDTN-QLKSVPDGIF--DRLTSLQKIWLHTNP 135 (177)
T ss_dssp ----TTTTCTTCCEEECCSS-CCSCCCTTTT--TTCTTCCEEECCSSC
T ss_pred ----HhhCCcccCEEECcCC-cceEeCHHHh--cCCcccCEEEecCCC
Confidence 1225789999999987 6888876553 368999999998875
No 25
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.93 E-value=1e-08 Score=74.14 Aligned_cols=117 Identities=21% Similarity=0.173 Sum_probs=67.0
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccc
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQ 81 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 81 (133)
.+++|++|+++++.++.+....+. .+++|++|+++++ .++.++. ..+. .+++|+.|++.+|..++.+.....
T Consensus 121 ~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~N-~l~~~~~-~~~~--~l~~L~~L~l~~~~~l~~i~~~~~ 192 (452)
T 3zyi_A 121 GLASLNTLELFDNWLTVIPSGAFE----YLSKLRELWLRNN-PIESIPS-YAFN--RVPSLMRLDLGELKKLEYISEGAF 192 (452)
T ss_dssp TCTTCCEEECCSSCCSBCCTTTSS----SCTTCCEEECCSC-CCCEECT-TTTT--TCTTCCEEECCCCTTCCEECTTTT
T ss_pred CcccCCEEECCCCcCCccChhhhc----ccCCCCEEECCCC-CcceeCH-hHHh--cCCcccEEeCCCCCCccccChhhc
Confidence 367888888888877766444332 4678888888775 4666532 2344 677778887777766666542111
Q ss_pred cc---------------cccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccC
Q 036006 82 EK---------------RNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 82 ~~---------------~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c 129 (133)
.. .-.....+++|+.|+++++ +++.+....+ ..+++|++|.+.++
T Consensus 193 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~--~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGN-HFPEIRPGSF--HGLSSLKKLWVMNS 252 (452)
T ss_dssp TTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTS-CCSEECGGGG--TTCTTCCEEECTTS
T ss_pred cCCCCCCEEECCCCcccccccccccccccEEECcCC-cCcccCcccc--cCccCCCEEEeCCC
Confidence 00 0001223455666666554 3444433333 35677777777654
No 26
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.92 E-value=8.3e-09 Score=69.88 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=16.5
Q ss_pred CCCccEEEEecCCCcceeccCccccccccCcccEEEEeCC
Q 036006 31 VQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGC 70 (133)
Q Consensus 31 l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c 70 (133)
+++|++|.++++ .++.+++ ..+. .+++|++|.+.++
T Consensus 84 l~~L~~L~l~~n-~l~~~~~-~~~~--~l~~L~~L~l~~n 119 (270)
T 2o6q_A 84 LKNLETLWVTDN-KLQALPI-GVFD--QLVNLAELRLDRN 119 (270)
T ss_dssp CTTCCEEECCSS-CCCCCCT-TTTT--TCSSCCEEECCSS
T ss_pred CCCCCEEECCCC-cCCcCCH-hHcc--cccCCCEEECCCC
Confidence 445555555543 2333321 1223 4556666665543
No 27
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.92 E-value=7.3e-09 Score=67.09 Aligned_cols=110 Identities=19% Similarity=0.219 Sum_probs=68.4
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcc----
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIII---- 78 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~---- 78 (133)
+++|++|++.++.++.+. +. ..+++|++|.+++| .++.+ ..+. .+++|++|+++++. ++....
T Consensus 43 l~~L~~L~l~~n~i~~l~--~l----~~l~~L~~L~l~~n-~~~~~---~~l~--~l~~L~~L~l~~n~-l~~~~~~~l~ 109 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT--GI----EYAHNIKDLTINNI-HATNY---NPIS--GLSNLERLRIMGKD-VTSDKIPNLS 109 (197)
T ss_dssp HHTCCEEEEESSCCSCCT--TG----GGCTTCSEEEEESC-CCSCC---GGGT--TCTTCCEEEEECTT-CBGGGSCCCT
T ss_pred cCCccEEeccCCCccChH--HH----hcCCCCCEEEccCC-CCCcc---hhhh--cCCCCCEEEeECCc-cCcccChhhc
Confidence 568999999999777663 12 25899999999998 66665 3455 89999999999864 332110
Q ss_pred ----------cccc-c--cccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccC
Q 036006 79 ----------VDQE-K--RNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 79 ----------~~~~-~--~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c 129 (133)
.... . .+..+..+++|+.|+++++..++.++. + ..+++|++|++.+|
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l--~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--L--KTLPELKSLNIQFD 169 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--G--GGCSSCCEEECTTB
T ss_pred CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--h--cCCCCCCEEECCCC
Confidence 0000 0 011223456666666666654555542 1 24566777766655
No 28
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.91 E-value=2.4e-09 Score=67.53 Aligned_cols=110 Identities=18% Similarity=0.228 Sum_probs=79.0
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccc
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQ 81 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 81 (133)
.+++|++|++.+|.++.+ ..+ ..+++|++|+++++. ++...+ .... .+++|+.|+++++. ++.+...
T Consensus 47 ~l~~L~~L~l~~n~l~~~--~~~----~~l~~L~~L~Ls~N~-l~~~~~-~~~~--~l~~L~~L~Ls~N~-l~~~~~~-- 113 (168)
T 2ell_A 47 EFVNLEFLSLINVGLISV--SNL----PKLPKLKKLELSENR-IFGGLD-MLAE--KLPNLTHLNLSGNK-LKDISTL-- 113 (168)
T ss_dssp GGGGCCEEEEESSCCCCC--SSC----CCCSSCCEEEEESCC-CCSCCC-HHHH--HCTTCCEEECBSSS-CCSSGGG--
T ss_pred hCCCCCEEeCcCCCCCCh--hhh----ccCCCCCEEECcCCc-CchHHH-HHHh--hCCCCCEEeccCCc-cCcchhH--
Confidence 468999999999987766 222 258999999999974 555322 3344 69999999999984 6655321
Q ss_pred cccccccccCCCccEEeeccccccccccc---CcccccCCCCccEEEEccCCC
Q 036006 82 EKRNNNIVMFPQLQYLKMYDLKKLTSFCT---RDVHIIKFPSLRKLWISRCPE 131 (133)
Q Consensus 82 ~~~~~~~~~~~~L~~L~i~~c~~L~~l~~---~~~~~~~~~~L~~L~i~~c~~ 131 (133)
..+..+++|+.|+++++ .++.++. ..+ ..+++|++|++.+|+.
T Consensus 114 ----~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~--~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 114 ----EPLKKLECLKSLDLFNC-EVTNLNDYRESVF--KLLPQLTYLDGYDRED 159 (168)
T ss_dssp ----GGGSSCSCCCEEECCSS-GGGTSTTHHHHHH--TTCSSCCEETTEETTS
T ss_pred ----HHHhcCCCCCEEEeeCC-cCcchHHHHHHHH--HhCccCcEecCCCCCh
Confidence 12335899999999998 4666654 222 3789999999988763
No 29
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.91 E-value=7.8e-10 Score=76.79 Aligned_cols=38 Identities=29% Similarity=0.469 Sum_probs=16.8
Q ss_pred CCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 91 FPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 91 ~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
+++|+.|++++|..++......+ ..+++|++|++.+|.
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~l--~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCFQEF--FQLNYLQHLSLSRCY 258 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGG--GGCTTCCEEECTTCT
T ss_pred CCCCCEEeCCCCCcCCHHHHHHH--hCCCCCCEeeCCCCC
Confidence 45555555555543332211111 134555555555554
No 30
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.89 E-value=1.3e-08 Score=66.22 Aligned_cols=108 Identities=17% Similarity=0.154 Sum_probs=79.7
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
.++|++|++++++++.+....+. .+++|++|+++++ +++.+++ ..+. .+++|++|+++++. ++.+...
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~----~l~~L~~L~l~~n-~l~~~~~-~~~~--~l~~L~~L~Ls~n~-l~~~~~~--- 94 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFD----ELTSLTQLYLGGN-KLQSLPN-GVFN--KLTSLTYLNLSTNQ-LQSLPNG--- 94 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTT----TCTTCSEEECCSS-CCCCCCT-TTTT--TCTTCCEEECCSSC-CCCCCTT---
T ss_pred CCCCcEEEcCCCccCcCChhhhc----ccccCcEEECCCC-ccCccCh-hhcC--CCCCcCEEECCCCc-CCccCHh---
Confidence 46799999999988766443332 5899999999985 6776643 3345 78999999999884 6654321
Q ss_pred ccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccC
Q 036006 83 KRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 83 ~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c 129 (133)
....+++|+.|+++++ +++.++...+ ..+++|++|++.++
T Consensus 95 ----~~~~l~~L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 95 ----VFDKLTQLKELALNTN-QLQSLPDGVF--DKLTQLKDLRLYQN 134 (208)
T ss_dssp ----TTTTCTTCCEEECCSS-CCCCCCTTTT--TTCTTCCEEECCSS
T ss_pred ----HhcCccCCCEEEcCCC-cCcccCHhHh--ccCCcCCEEECCCC
Confidence 1225889999999887 5777776544 36899999999876
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.88 E-value=8.9e-09 Score=76.55 Aligned_cols=111 Identities=20% Similarity=0.202 Sum_probs=81.1
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccc
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQ 81 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 81 (133)
.+++|++|++++|+++.+.++.+. .+++|++|+++++ +++.+++ ..+. ++++|++|++.++. ++.+...
T Consensus 74 ~l~~L~~L~Ls~N~i~~i~~~~f~----~L~~L~~L~Ls~N-~l~~l~~-~~f~--~L~~L~~L~Ls~N~-l~~l~~~-- 142 (635)
T 4g8a_A 74 SFPELQVLDLSRCEIQTIEDGAYQ----SLSHLSTLILTGN-PIQSLAL-GAFS--GLSSLQKLVAVETN-LASLENF-- 142 (635)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTT----TCTTCCEEECTTC-CCCEECG-GGGT--TCTTCCEEECTTSC-CCCSTTC--
T ss_pred CCCCCCEEECCCCcCCCcChhHhc----CCCCCCEEEccCC-cCCCCCH-HHhc--CCCCCCEEECCCCc-CCCCChh--
Confidence 478999999999999888665544 5899999999996 6888753 3456 89999999999884 6655321
Q ss_pred cccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 82 EKRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 82 ~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
....+++|+.|+++++ +++.+..... ...+++|++|.+.++.
T Consensus 143 -----~~~~L~~L~~L~Ls~N-~l~~~~~~~~-~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 143 -----PIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNK 184 (635)
T ss_dssp -----CCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred -----hhhcCcccCeeccccC-ccccCCCchh-hccchhhhhhcccCcc
Confidence 2235889999999887 4554432211 1367899999887753
No 32
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.87 E-value=1.8e-08 Score=68.52 Aligned_cols=115 Identities=15% Similarity=0.124 Sum_probs=59.5
Q ss_pred CccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc-
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE- 82 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~- 82 (133)
++|++|+++++.++.+....+. .+++|++|+++++ .++.+.+ ..+. .+++|++|+++++..+..+......
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~----~~~~L~~L~l~~n-~l~~~~~-~~~~--~l~~L~~L~l~~n~~l~~~~~~~~~~ 103 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFR----ACRNLTILWLHSN-VLARIDA-AAFT--GLALLEQLDLSDNAQLRSVDPATFHG 103 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTT----TCTTCCEEECCSS-CCCEECT-TTTT--TCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred CCceEEEeeCCcCCccCHHHcc----cCCCCCEEECCCC-ccceeCH-hhcC--CccCCCEEeCCCCCCccccCHHHhcC
Confidence 4667777776666655433222 3566666666654 3444422 2233 5566666666655433333111000
Q ss_pred ----------------ccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccC
Q 036006 83 ----------------KRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 83 ----------------~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c 129 (133)
..+.....+++|+.|+++++ +++.++...+ ..+++|++|++.++
T Consensus 104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~--~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTF--RDLGNLTHLFLHGN 163 (285)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT--TTCTTCCEEECCSS
T ss_pred CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHh--ccCCCccEEECCCC
Confidence 00111234667777777665 4555554433 25678888877765
No 33
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.87 E-value=2e-08 Score=66.20 Aligned_cols=67 Identities=13% Similarity=0.247 Sum_probs=42.5
Q ss_pred CCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeeccccccccccc
Q 036006 31 VQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFCT 110 (133)
Q Consensus 31 l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~ 110 (133)
.++|+.|.+++. +++.+++ ..+. .+++|+.|+++++. +..+.... ...+++|+.|+++++ +++.++.
T Consensus 31 ~~~l~~L~l~~n-~i~~i~~-~~~~--~l~~L~~L~Ls~N~-i~~~~~~~-------~~~l~~L~~L~Ls~N-~l~~l~~ 97 (220)
T 2v9t_B 31 PETITEIRLEQN-TIKVIPP-GAFS--PYKKLRRIDLSNNQ-ISELAPDA-------FQGLRSLNSLVLYGN-KITELPK 97 (220)
T ss_dssp CTTCCEEECCSS-CCCEECT-TSST--TCTTCCEEECCSSC-CCEECTTT-------TTTCSSCCEEECCSS-CCCCCCT
T ss_pred CcCCCEEECCCC-cCCCcCH-hHhh--CCCCCCEEECCCCc-CCCcCHHH-------hhCCcCCCEEECCCC-cCCccCH
Confidence 368999999985 6777743 3455 88999999999875 66653211 113455555555544 3444443
No 34
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.87 E-value=1.3e-08 Score=67.43 Aligned_cols=107 Identities=18% Similarity=0.118 Sum_probs=79.6
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
.++|++|+++++.++.+....+. .+++|++|+++++ +++.++. ..+. .+++|+.|+++++. ++.+...
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~L~~N-~l~~i~~-~~~~--~l~~L~~L~Ls~N~-l~~l~~~--- 106 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFD----SLINLKELYLGSN-QLGALPV-GVFD--SLTQLTVLDLGTNQ-LTVLPSA--- 106 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTT----TCTTCCEEECCSS-CCCCCCT-TTTT--TCTTCCEEECCSSC-CCCCCTT---
T ss_pred CCCCCEEEcCCCccCccCHHHhh----CccCCcEEECCCC-CCCCcCh-hhcc--cCCCcCEEECCCCc-CCccChh---
Confidence 36799999999988876444332 5899999999986 5677643 3445 88999999999874 6665321
Q ss_pred ccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccC
Q 036006 83 KRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 83 ~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c 129 (133)
....+++|+.|+++++ +++.++... ..+++|++|++.++
T Consensus 107 ----~~~~l~~L~~L~Ls~N-~l~~lp~~~---~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 107 ----VFDRLVHLKELFMCCN-KLTELPRGI---ERLTHLTHLALDQN 145 (229)
T ss_dssp ----TTTTCTTCCEEECCSS-CCCSCCTTG---GGCTTCSEEECCSS
T ss_pred ----HhCcchhhCeEeccCC-cccccCccc---ccCCCCCEEECCCC
Confidence 1225889999999887 588887654 37899999999876
No 35
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.86 E-value=2.6e-08 Score=70.17 Aligned_cols=110 Identities=24% Similarity=0.186 Sum_probs=57.9
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
+++|++|+++++.+..+....+. .+++|++|++++. +++.+++ ..+. .+++|+.|+++++. +..+..
T Consensus 63 l~~L~~L~L~~N~i~~i~~~~~~----~l~~L~~L~Ls~N-~l~~~~~-~~~~--~l~~L~~L~L~~N~-i~~~~~---- 129 (361)
T 2xot_A 63 LTNLHSLLLSHNHLNFISSEAFV----PVPNLRYLDLSSN-HLHTLDE-FLFS--DLQALEVLLLYNNH-IVVVDR---- 129 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTT----TCTTCCEEECCSS-CCCEECT-TTTT--TCTTCCEEECCSSC-CCEECT----
T ss_pred ccccCEEECCCCcCCccChhhcc----CCCCCCEEECCCC-cCCcCCH-HHhC--CCcCCCEEECCCCc-ccEECH----
Confidence 45555555555555544332222 3556666666553 3555432 2233 55666666666553 444421
Q ss_pred ccccccccCCCccEEeecccccccccccCcccc-cCCCCccEEEEccC
Q 036006 83 KRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHI-IKFPSLRKLWISRC 129 (133)
Q Consensus 83 ~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~-~~~~~L~~L~i~~c 129 (133)
.....+++|+.|+++++ +++.++...+.. ..+++|+.|++.++
T Consensus 130 ---~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 130 ---NAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp ---TTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS
T ss_pred ---HHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 12224677888888776 566666543210 24678888887665
No 36
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.85 E-value=2.2e-08 Score=64.83 Aligned_cols=108 Identities=15% Similarity=0.102 Sum_probs=78.6
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
.++|++|++.++.++.++. .+ ..+++|++|++++. .++.+.+ ..+. .+++|+.|++++.. ++.+...
T Consensus 30 ~~~l~~L~L~~n~i~~ip~-~~----~~l~~L~~L~Ls~N-~i~~i~~-~~f~--~l~~L~~L~Ls~N~-l~~i~~~--- 96 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTLVPK-EL----SNYKHLTLIDLSNN-RISTLSN-QSFS--NMTQLLTLILSYNR-LRCIPPR--- 96 (193)
T ss_dssp CTTCCEEECCSSCCCSCCG-GG----GGCTTCCEEECCSS-CCCCCCT-TTTT--TCTTCCEEECCSSC-CCBCCTT---
T ss_pred CCCCCEEECCCCcCchhHH-Hh----hcccCCCEEECCCC-cCCEeCH-hHcc--CCCCCCEEECCCCc-cCEeCHH---
Confidence 3578899999887776642 22 25889999999885 6777643 3345 88999999998875 6665321
Q ss_pred ccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 83 KRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 83 ~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
....+++|+.|++++. +++.++...+ ..+++|++|++.+.+
T Consensus 97 ----~f~~l~~L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 97 ----TFDGLKSLRLLSLHGN-DISVVPEGAF--NDLSALSHLAIGANP 137 (193)
T ss_dssp ----TTTTCTTCCEEECCSS-CCCBCCTTTT--TTCTTCCEEECCSSC
T ss_pred ----HhCCCCCCCEEECCCC-CCCeeChhhh--hcCccccEEEeCCCC
Confidence 2235889999999887 5888877654 368999999988754
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.85 E-value=1.3e-08 Score=70.90 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=8.7
Q ss_pred CCCccEEeecccccccc
Q 036006 91 FPQLQYLKMYDLKKLTS 107 (133)
Q Consensus 91 ~~~L~~L~i~~c~~L~~ 107 (133)
+++|+.|+++++..+..
T Consensus 131 l~~L~~L~l~~n~~~~~ 147 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSD 147 (347)
T ss_dssp CTTCCEEECTTCTTCCC
T ss_pred CCceeEEECCCCCCccc
Confidence 45555555555544433
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.85 E-value=1.8e-08 Score=71.38 Aligned_cols=108 Identities=19% Similarity=0.131 Sum_probs=47.5
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
+++|++|++.++.++.+....+. .+++|++|+++++ .++.+++ ..++ .+++|++|++.++. ++.++..
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~~-~~~~--~l~~L~~L~L~~n~-l~~l~~~--- 135 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFA----YAHTIQKLYMGFN-AIRYLPP-HVFQ--NVPLLTVLVLERND-LSSLPRG--- 135 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTT----TCTTCCEEECCSS-CCCCCCT-TTTT--TCTTCCEEECCSSC-CCCCCTT---
T ss_pred cccCcEEECCCCcccccChhhcc----CCCCcCEEECCCC-CCCcCCH-HHhc--CCCCCCEEECCCCc-cCcCCHH---
Confidence 34455555555544443322211 3455555555554 2333322 1223 45556666555542 3333211
Q ss_pred ccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccC
Q 036006 83 KRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 83 ~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c 129 (133)
....+++|+.|+++++ +++.++...+ ..+++|++|.+.++
T Consensus 136 ----~~~~l~~L~~L~L~~n-~l~~~~~~~~--~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 136 ----IFHNTPKLTTLSMSNN-NLERIEDDTF--QATTSLQNLQLSSN 175 (390)
T ss_dssp ----TTTTCTTCCEEECCSS-CCCBCCTTTT--SSCTTCCEEECCSS
T ss_pred ----HhcCCCCCcEEECCCC-ccCccChhhc--cCCCCCCEEECCCC
Confidence 0113555666666554 3444433222 24455555555544
No 39
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.83 E-value=7.5e-09 Score=72.54 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=29.5
Q ss_pred CccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCC
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGC 70 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c 70 (133)
++|++|++++++++.+....+. .+++|++|+++++ +++.+.+ ..+. .+++|++|+++++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~~-~~~~--~l~~L~~L~Ls~n 110 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQ----RCVNLQALVLTSN-GINTIEE-DSFS--SLGSLEHLDLSYN 110 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTT----TCTTCCEEECTTS-CCCEECT-TTTT--TCTTCCEEECCSS
T ss_pred ccCcEEECCCCcCcccCHHHhc----cCCCCCEEECCCC-ccCccCH-hhcC--CCCCCCEEECCCC
Confidence 4566666666655555332222 3556666666554 3444422 1223 4555555555444
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.83 E-value=3.4e-08 Score=71.67 Aligned_cols=60 Identities=25% Similarity=0.289 Sum_probs=26.6
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCC
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGC 70 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c 70 (133)
+++|++|+++++.++.+.+..+. .+++|++|+++++ +++.++. ..+. .+++|+.|+++++
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~~-~~~~--~l~~L~~L~Ls~n 114 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFN----NLFNLRTLGLRSN-RLKLIPL-GVFT--GLSNLTKLDISEN 114 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTT----TCTTCCEEECCSS-CCCSCCT-TSST--TCTTCCEEECTTS
T ss_pred CCCCCEEECCCCccCEeChhhhh----CCccCCEEECCCC-cCCccCc-cccc--CCCCCCEEECCCC
Confidence 34455555555544443222221 3455555555553 3444321 1223 4555555555544
No 41
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.83 E-value=3.9e-08 Score=66.59 Aligned_cols=113 Identities=18% Similarity=0.202 Sum_probs=63.4
Q ss_pred ccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc--
Q 036006 5 KLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE-- 82 (133)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~-- 82 (133)
+|++|++++++++.+....+. .+++|++|+++++ .++.+++ ..+. .+++|++|+++++. ++.+......
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~----~l~~L~~L~l~~n-~l~~~~~-~~~~--~l~~L~~L~L~~n~-l~~~~~~~~~~l 99 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFF----SFPELQVLDLSRC-EIQTIED-GAYQ--SLSHLSTLILTGNP-IQSLALGAFSGL 99 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTT----TCTTCSEEECTTC-CCCEECT-TTTT--TCTTCCEEECTTCC-CCEECTTTTTTC
T ss_pred CccEEECCCCcccccCHhHhc----cccCCcEEECCCC-cCCccCH-HHcc--CCcCCCEEECCCCc-cCccChhhhcCC
Confidence 578888888777766443222 4677888888776 5566532 2334 67777777777664 4444311100
Q ss_pred ---------------ccccccccCCCccEEeeccccccccc--ccCcccccCCCCccEEEEccCC
Q 036006 83 ---------------KRNNNIVMFPQLQYLKMYDLKKLTSF--CTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 83 ---------------~~~~~~~~~~~L~~L~i~~c~~L~~l--~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
..+.....+++|+.|+++++ +++.+ +.. + ..+++|++|++.++.
T Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~--~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-F--SNLTNLEHLDLSSNK 160 (276)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-G--GGCTTCCEEECCSSC
T ss_pred ccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchh-h--ccCCCCCEEECCCCC
Confidence 00112234566777777665 34442 221 1 256778888777653
No 42
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.83 E-value=2.1e-08 Score=68.78 Aligned_cols=65 Identities=23% Similarity=0.194 Sum_probs=39.6
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEE
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEI 76 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i 76 (133)
.+++|++|+++++.++.++.. ...+++|++|.++++ +++.+++ ..+. .+++|+.|.++++. ++.+
T Consensus 75 ~l~~L~~L~Ls~N~l~~l~~~-----~~~l~~L~~L~l~~N-~l~~l~~-~~~~--~l~~L~~L~L~~N~-l~~~ 139 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQSLPLL-----GQTLPALTVLDVSFN-RLTSLPL-GALR--GLGELQELYLKGNE-LKTL 139 (290)
T ss_dssp CCTTCCEEECCSSCCSSCCCC-----TTTCTTCCEEECCSS-CCCCCCS-STTT--TCTTCCEEECTTSC-CCCC
T ss_pred CCCcCCEEECCCCcCCcCchh-----hccCCCCCEEECCCC-cCcccCH-HHHc--CCCCCCEEECCCCC-CCcc
Confidence 467788888888876655321 124677777777764 5555532 2334 66777777776653 4443
No 43
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.83 E-value=2.3e-08 Score=73.78 Aligned_cols=62 Identities=26% Similarity=0.403 Sum_probs=37.7
Q ss_pred ccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 58 IFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 58 ~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
.+++|+.|++++|. ++.+. +.....+++|+.|+++++ +++.++...+ ..+++|++|++.+++
T Consensus 468 ~l~~L~~L~l~~n~-l~~~~-------~~~~~~l~~L~~L~l~~n-~l~~~~~~~~--~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 468 ELRNLTFLDLSQCQ-LEQLS-------PTAFNSLSSLQVLNMASN-QLKSVPDGIF--DRLTSLQKIWLHTNP 529 (570)
T ss_dssp TCTTCCEEECTTSC-CCEEC-------TTTTTTCTTCCEEECCSS-CCSCCCTTTT--TTCTTCCEEECCSSC
T ss_pred cccCCCEEECCCCc-cccCC-------hhhhhcccCCCEEeCCCC-cCCCCCHHHh--hcccCCcEEEecCCc
Confidence 44555555555543 33331 122235778888888877 5777665543 367888888888754
No 44
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.82 E-value=1.6e-08 Score=69.94 Aligned_cols=37 Identities=8% Similarity=-0.039 Sum_probs=22.5
Q ss_pred cCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 90 MFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 90 ~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
.+++|+.|+++++ +++.++... ..+++|+.|++.+++
T Consensus 212 ~l~~L~~L~L~~N-~l~~l~~~~---~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 212 SAAGVTWISLRNN-KLVLIEKAL---RFSQNLEHFDLRGNG 248 (317)
T ss_dssp GGTTCSEEECTTS-CCCEECTTC---CCCTTCCEEECTTCC
T ss_pred ccCcccEEECcCC-cccchhhHh---hcCCCCCEEEccCCC
Confidence 4566666666665 455555432 256777777776654
No 45
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.81 E-value=2.8e-08 Score=68.19 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=40.0
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEE
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEI 76 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i 76 (133)
.+++|++|+++++.++.+... ..+++|++|+++++ +++.++ .... .+++|+.|.++++. ++.+
T Consensus 53 ~l~~L~~L~L~~n~l~~~~~~------~~l~~L~~L~Ls~N-~l~~l~--~~~~--~l~~L~~L~l~~N~-l~~l 115 (290)
T 1p9a_G 53 PYTRLTQLNLDRAELTKLQVD------GTLPVLGTLDLSHN-QLQSLP--LLGQ--TLPALTVLDVSFNR-LTSL 115 (290)
T ss_dssp TCTTCCEEECTTSCCCEEECC------SCCTTCCEEECCSS-CCSSCC--CCTT--TCTTCCEEECCSSC-CCCC
T ss_pred cCCCCCEEECCCCccCcccCC------CCCCcCCEEECCCC-cCCcCc--hhhc--cCCCCCEEECCCCc-Cccc
Confidence 356778888887776666332 24778888888774 555553 2334 67788888777653 4433
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.81 E-value=1.4e-08 Score=71.16 Aligned_cols=35 Identities=29% Similarity=0.305 Sum_probs=17.9
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEec
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYK 41 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~ 41 (133)
+++|++|+++++.++.+....+. .+++|++|++++
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~Ls~ 109 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFS----SLGSLEHLDLSY 109 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTT----TCTTCCEEECCS
T ss_pred CCCCCEEECCCCccCccCHhhcC----CCCCCCEEECCC
Confidence 45666666666655554332221 244555555544
No 47
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.80 E-value=1e-08 Score=63.42 Aligned_cols=105 Identities=18% Similarity=0.229 Sum_probs=61.6
Q ss_pred CCccceeeeccceee--eecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccc
Q 036006 3 LPKLENLELRSINVE--RIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVD 80 (133)
Q Consensus 3 l~~L~~L~l~~~~l~--~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~ 80 (133)
+++|++|+++++.+. .++. ....+++|++|.++++ .++.+ .... .+++|+.|+++++. +.....
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~-----~~~~l~~L~~L~l~~n-~l~~~---~~~~--~l~~L~~L~Ls~n~-i~~~~~-- 81 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEG-----LTDEFEELEFLSTINV-GLTSI---ANLP--KLNKLKKLELSDNR-VSGGLE-- 81 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCS-----CCTTCTTCCEEECTTS-CCCCC---TTCC--CCTTCCEEECCSSC-CCSCTH--
T ss_pred CccCeEEEccCCcCChhHHHH-----HHhhcCCCcEEECcCC-CCCCc---hhhh--cCCCCCEEECCCCc-ccchHH--
Confidence 467888888888665 3421 1124788888888876 55555 3444 77788888887764 433110
Q ss_pred ccccccccccCCCccEEeeccccccccccc-CcccccCCCCccEEEEccC
Q 036006 81 QEKRNNNIVMFPQLQYLKMYDLKKLTSFCT-RDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 81 ~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~-~~~~~~~~~~L~~L~i~~c 129 (133)
.....+++|+.|+++++ +++.++. ..+ ..+++|++|++.++
T Consensus 82 -----~~~~~l~~L~~L~ls~N-~i~~~~~~~~~--~~l~~L~~L~l~~N 123 (149)
T 2je0_A 82 -----VLAEKCPNLTHLNLSGN-KIKDLSTIEPL--KKLENLKSLDLFNC 123 (149)
T ss_dssp -----HHHHHCTTCCEEECTTS-CCCSHHHHGGG--GGCTTCCEEECTTC
T ss_pred -----HHhhhCCCCCEEECCCC-cCCChHHHHHH--hhCCCCCEEeCcCC
Confidence 11113666777777665 3555431 111 25566777766655
No 48
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.80 E-value=1.7e-08 Score=71.53 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=20.0
Q ss_pred cCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 90 MFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 90 ~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
.+++|+.|++++++ ++.++. ..+++|++|++.+++
T Consensus 316 ~l~~L~~L~L~~N~-i~~~~~-----~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 316 QFDRLENLYLDHNS-IVTLKL-----STHHTLKNLTLSHND 350 (390)
T ss_dssp HHTTCSEEECCSSC-CCCCCC-----CTTCCCSEEECCSSC
T ss_pred ccCcCCEEECCCCc-cceeCc-----hhhccCCEEEcCCCC
Confidence 35666666666553 444432 245777777776654
No 49
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.80 E-value=3.4e-08 Score=62.81 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=31.7
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEE
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEI 76 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i 76 (133)
.++|+.|++.++.++.+. . .....++|++|+++++ .++.+ ..+. .+++|+.|.++++. +..+
T Consensus 18 ~~~L~~L~l~~n~l~~i~-~----~~~~~~~L~~L~Ls~N-~l~~~---~~l~--~l~~L~~L~Ls~N~-l~~~ 79 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIE-N----LGATLDQFDAIDFSDN-EIRKL---DGFP--LLRRLKTLLVNNNR-ICRI 79 (176)
T ss_dssp TTSCEEEECTTSCCCSCC-C----GGGGTTCCSEEECCSS-CCCEE---CCCC--CCSSCCEEECCSSC-CCEE
T ss_pred cCCceEEEeeCCCCchhH-H----hhhcCCCCCEEECCCC-CCCcc---cccc--cCCCCCEEECCCCc-cccc
Confidence 345666666666555441 1 1112346666666664 44444 2333 55666666666553 4444
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.79 E-value=3e-08 Score=74.14 Aligned_cols=108 Identities=19% Similarity=0.128 Sum_probs=58.5
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
+++|+.|+++++.+..+....+. .+++|++|+++++ .++.+++ ..++ .+++|+.|+++++. +..++...
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~~-~~~~--~l~~L~~L~L~~n~-l~~l~~~~-- 142 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFA----YAHTIQKLYMGFN-AIRYLPP-HVFQ--NVPLLTVLVLERND-LSSLPRGI-- 142 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTT----TCTTCCEEECCSS-CCCCCCT-TTTT--TCTTCCEEECCSSC-CCCCCTTT--
T ss_pred CCCCcEEECCCCCCCCCChHHhc----CCCCCCEEECCCC-cCCCCCH-HHHc--CCCCCCEEEeeCCC-CCCCCHHH--
Confidence 45666777766666555433222 4667777777665 3555532 2334 66777777777663 44432111
Q ss_pred ccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccC
Q 036006 83 KRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 83 ~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c 129 (133)
...+++|+.|+++++ +++.++...+ ..+++|++|.+.++
T Consensus 143 -----~~~l~~L~~L~Ls~N-~l~~~~~~~~--~~l~~L~~L~L~~N 181 (597)
T 3oja_B 143 -----FHNTPKLTTLSMSNN-NLERIEDDTF--QATTSLQNLQLSSN 181 (597)
T ss_dssp -----TTTCTTCCEEECCSS-CCCBCCTTTT--TTCTTCCEEECTTS
T ss_pred -----hccCCCCCEEEeeCC-cCCCCChhhh--hcCCcCcEEECcCC
Confidence 123566666666665 3444443332 24566666666554
No 51
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.79 E-value=8e-08 Score=62.01 Aligned_cols=109 Identities=19% Similarity=0.227 Sum_probs=77.3
Q ss_pred CccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccc
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEK 83 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 83 (133)
++|++|++.++.+..+..... ...+++|++|+++++ +++.+.+ ..+. .+++|+.|++++.. ++.+...
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~-~~~~--~l~~L~~L~Ls~N~-l~~~~~~---- 96 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGL---FGRLPHLVKLELKRN-QLTGIEP-NAFE--GASHIQELQLGENK-IKEISNK---- 96 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCS---GGGCTTCCEEECCSS-CCCCBCT-TTTT--TCTTCCEEECCSCC-CCEECSS----
T ss_pred CCCCEEECCCCcCCccCCccc---cccCCCCCEEECCCC-CCCCcCH-hHcC--CcccCCEEECCCCc-CCccCHH----
Confidence 478888888887776643211 125889999999885 5666633 3445 78999999998875 7766432
Q ss_pred cccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 84 RNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 84 ~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
....+++|+.|+++++ +++.+....+ ..+++|++|++.+.+
T Consensus 97 ---~~~~l~~L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 97 ---MFLGLHQLKTLNLYDN-QISCVMPGSF--EHLNSLTSLNLASNP 137 (192)
T ss_dssp ---SSTTCTTCCEEECCSS-CCCEECTTSS--TTCTTCCEEECTTCC
T ss_pred ---HhcCCCCCCEEECCCC-cCCeeCHHHh--hcCCCCCEEEeCCCC
Confidence 1224789999999887 5776654444 367999999998764
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.79 E-value=4.5e-08 Score=67.18 Aligned_cols=17 Identities=29% Similarity=0.643 Sum_probs=9.3
Q ss_pred CCccceeeeccceeeee
Q 036006 3 LPKLENLELRSINVERI 19 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~ 19 (133)
+++|++|+++++.++.+
T Consensus 100 l~~L~~L~l~~n~l~~~ 116 (306)
T 2z66_A 100 LEQLEHLDFQHSNLKQM 116 (306)
T ss_dssp CTTCCEEECTTSEEESS
T ss_pred CCCCCEEECCCCccccc
Confidence 45566666655554444
No 53
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.77 E-value=2.8e-09 Score=73.93 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=29.3
Q ss_pred cccCCCccEEeecccccccccccCcccccCCCCccEEEEccC
Q 036006 88 IVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 88 ~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c 129 (133)
+..+++|+.|++++|..+.......+ ..+++|++|++.+|
T Consensus 243 l~~l~~L~~L~l~~~~~~~~~~~~~l--~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 243 FFQLNYLQHLSLSRCYDIIPETLLEL--GEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGCTTCCEEECTTCTTCCGGGGGGG--GGCTTCCEEECTTS
T ss_pred HhCCCCCCEeeCCCCCCCCHHHHHHH--hcCCCCCEEeccCc
Confidence 34679999999999975544322223 36899999999887
No 54
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.76 E-value=5e-08 Score=66.08 Aligned_cols=117 Identities=19% Similarity=0.220 Sum_probs=65.2
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCC----------
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCP---------- 71 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~---------- 71 (133)
.+++|++|+++++.+..+....+. .+++|++|+++++ .++.+++ ..+. .+++|++|.+.++.
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~~-~~~~--~l~~L~~L~l~~n~l~~~~~~~~~ 121 (276)
T 2z62_A 50 SFPELQVLDLSRCEIQTIEDGAYQ----SLSHLSTLILTGN-PIQSLAL-GAFS--GLSSLQKLVAVETNLASLENFPIG 121 (276)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTT----TCTTCCEEECTTC-CCCEECT-TTTT--TCTTCCEEECTTSCCCCSTTCCCT
T ss_pred cccCCcEEECCCCcCCccCHHHcc----CCcCCCEEECCCC-ccCccCh-hhhc--CCccccEEECCCCCccccCchhcc
Confidence 367888888888877766443332 4677777777765 3455432 2233 55666666554432
Q ss_pred ---CceEEcccccc-c---cccccccCCCccEEeecccccccccccCcccccCCCCcc----EEEEccC
Q 036006 72 ---VLEEIIIVDQE-K---RNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLR----KLWISRC 129 (133)
Q Consensus 72 ---~l~~i~~~~~~-~---~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~----~L~i~~c 129 (133)
+++.+...... . .+.....+++|+.|+++++ +++.++...+. .+++|+ ++.+.++
T Consensus 122 ~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~--~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLR--VLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGH--HHHTCTTCCEEEECCSS
T ss_pred cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhh--hhhhccccceeeecCCC
Confidence 22222111100 0 1233446889999999988 46666544331 334444 6777665
No 55
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.76 E-value=2.3e-08 Score=69.70 Aligned_cols=56 Identities=11% Similarity=0.222 Sum_probs=25.4
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCC
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGC 70 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c 70 (133)
+++|++|++++|.++.+.. ...+++|++|+++++ .++.+ .... .+++|+.|++++|
T Consensus 220 ~~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n-~l~~~---~~~~--~l~~L~~L~l~~n 275 (347)
T 4fmz_A 220 MTRLNSLKIGNNKITDLSP------LANLSQLTWLEIGTN-QISDI---NAVK--DLTKLKMLNVGSN 275 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSS-CCCCC---GGGT--TCTTCCEEECCSS
T ss_pred CCcCCEEEccCCccCCCcc------hhcCCCCCEEECCCC-ccCCC---hhHh--cCCCcCEEEccCC
Confidence 3455555555554443321 113455555555554 33333 1223 4555555555554
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.76 E-value=6.2e-08 Score=67.05 Aligned_cols=108 Identities=11% Similarity=0.016 Sum_probs=79.3
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccc
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQ 81 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 81 (133)
.+++|++|+++++.++.+....+. .+++|++|+++++ .++.+.+..... .+++|++|+++++. ++.+....
T Consensus 118 ~~~~L~~L~l~~N~l~~~~~~~~~----~l~~L~~L~Ls~N-~l~~~~~~~~~~--~l~~L~~L~L~~N~-l~~~~~~~- 188 (317)
T 3o53_A 118 RGQGKKNIYLANNKITMLRDLDEG----CRSRVQYLDLKLN-EIDTVNFAELAA--SSDTLEHLNLQYNF-IYDVKGQV- 188 (317)
T ss_dssp CCSSCEEEECCSSCCCSGGGBCTG----GGSSEEEEECTTS-CCCEEEGGGGGG--GTTTCCEEECTTSC-CCEEECCC-
T ss_pred ccCCCCEEECCCCCCCCccchhhh----ccCCCCEEECCCC-CCCcccHHHHhh--ccCcCCEEECCCCc-Cccccccc-
Confidence 468899999999988776443322 5789999999986 566654433444 68999999999885 76663211
Q ss_pred cccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 82 EKRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 82 ~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
.+++|+.|+++++ +++.++... ..+++|++|++.++.
T Consensus 189 --------~l~~L~~L~Ls~N-~l~~l~~~~---~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 189 --------VFAKLKTLDLSSN-KLAFMGPEF---QSAAGVTWISLRNNK 225 (317)
T ss_dssp --------CCTTCCEEECCSS-CCCEECGGG---GGGTTCSEEECTTSC
T ss_pred --------ccccCCEEECCCC-cCCcchhhh---cccCcccEEECcCCc
Confidence 3889999999987 577776553 367999999998763
No 57
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.75 E-value=4.7e-09 Score=64.95 Aligned_cols=106 Identities=17% Similarity=0.222 Sum_probs=75.1
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccc
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQ 81 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 81 (133)
.+++|++|+++++.++.+ ... ..+++|++|+++++. ++...+ .... .+++|+.|+++++. ++.+..
T Consensus 40 ~l~~L~~L~l~~n~l~~~--~~~----~~l~~L~~L~Ls~n~-i~~~~~-~~~~--~l~~L~~L~ls~N~-i~~~~~--- 105 (149)
T 2je0_A 40 EFEELEFLSTINVGLTSI--ANL----PKLNKLKKLELSDNR-VSGGLE-VLAE--KCPNLTHLNLSGNK-IKDLST--- 105 (149)
T ss_dssp TCTTCCEEECTTSCCCCC--TTC----CCCTTCCEEECCSSC-CCSCTH-HHHH--HCTTCCEEECTTSC-CCSHHH---
T ss_pred hcCCCcEEECcCCCCCCc--hhh----hcCCCCCEEECCCCc-ccchHH-HHhh--hCCCCCEEECCCCc-CCChHH---
Confidence 468999999999987766 212 258999999999874 554212 2334 68999999999985 555421
Q ss_pred cccccccccCCCccEEeeccccccccccc---CcccccCCCCccEEEEc
Q 036006 82 EKRNNNIVMFPQLQYLKMYDLKKLTSFCT---RDVHIIKFPSLRKLWIS 127 (133)
Q Consensus 82 ~~~~~~~~~~~~L~~L~i~~c~~L~~l~~---~~~~~~~~~~L~~L~i~ 127 (133)
......+++|+.|+++++ .++.++. ..+ ..+++|++|++.
T Consensus 106 ---~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~--~~l~~L~~L~l~ 148 (149)
T 2je0_A 106 ---IEPLKKLENLKSLDLFNC-EVTNLNDYRENVF--KLLPQLTYLDGY 148 (149)
T ss_dssp ---HGGGGGCTTCCEEECTTC-GGGGSTTHHHHHH--HHCTTCCEETTB
T ss_pred ---HHHHhhCCCCCEEeCcCC-cccchHHHHHHHH--HHCCCcccccCC
Confidence 112336899999999998 5777665 222 367999998765
No 58
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.73 E-value=1.1e-07 Score=68.39 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=76.4
Q ss_pred CccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccc
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEK 83 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 83 (133)
++|++|+++++.+..+....+. .+++|++|+++++ .++.+.+ ..+. .+++|+.|+++++. +..+...
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~Ls~n-~l~~~~~-~~~~--~l~~L~~L~Ls~N~-l~~~~~~---- 341 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFS----HFTDLEQLTLAQN-EINKIDD-NAFW--GLTHLLKLNLSQNF-LGSIDSR---- 341 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTT----TCTTCCEEECTTS-CCCEECT-TTTT--TCTTCCEEECCSSC-CCEECGG----
T ss_pred cCceEEEecCccccccchhhcc----cCCCCCEEECCCC-cccccCh-hHhc--CcccCCEEECCCCc-cCCcChh----
Confidence 5788888888866665433322 5789999999886 4666533 2445 78999999999884 6665321
Q ss_pred cccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 84 RNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 84 ~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
....+++|+.|+++++ +++.+....+ ..+++|++|++.++.
T Consensus 342 ---~~~~l~~L~~L~Ls~N-~l~~~~~~~~--~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 342 ---MFENLDKLEVLDLSYN-HIRALGDQSF--LGLPNLKELALDTNQ 382 (455)
T ss_dssp ---GGTTCTTCCEEECCSS-CCCEECTTTT--TTCTTCCEEECCSSC
T ss_pred ---HhcCcccCCEEECCCC-cccccChhhc--cccccccEEECCCCc
Confidence 2235899999999988 5777654443 378999999998763
No 59
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.72 E-value=3.4e-08 Score=73.81 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=21.1
Q ss_pred cCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 90 MFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 90 ~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
.+++|+.|+++++. ++.++. ..+++|+.|++.+++
T Consensus 322 ~l~~L~~L~L~~N~-l~~~~~-----~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 322 QFDRLENLYLDHNS-IVTLKL-----STHHTLKNLTLSHND 356 (597)
T ss_dssp HHTTCSEEECCSSC-CCCCCC-----CTTCCCSEEECCSSC
T ss_pred cCCCCCEEECCCCC-CCCcCh-----hhcCCCCEEEeeCCC
Confidence 46666666666653 444432 245777777777654
No 60
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.72 E-value=5.7e-08 Score=67.09 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=16.2
Q ss_pred CCCccEEeecccccccccccCcccccCCCCccEEEEccC
Q 036006 91 FPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 91 ~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c 129 (133)
+++|+.|+++++ +++.++. + ..+++|++|++.++
T Consensus 150 l~~L~~L~l~~n-~l~~~~~--l--~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 150 LTNLQYLSIGNA-QVSDLTP--L--ANLSKLTTLKADDN 183 (308)
T ss_dssp CTTCCEEECCSS-CCCCCGG--G--TTCTTCCEEECCSS
T ss_pred CCCccEEEccCC-cCCCChh--h--cCCCCCCEEECCCC
Confidence 445555555444 3333332 1 24566666665544
No 61
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.72 E-value=8.2e-08 Score=66.69 Aligned_cols=104 Identities=18% Similarity=0.214 Sum_probs=57.2
Q ss_pred CccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccc
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEK 83 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 83 (133)
++|+.|++++++++.+....+. .+++|++|.++++ +++.+.+ ..+. .+++|++|+++++. ++.++..
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~~-~~~~--~l~~L~~L~L~~n~-l~~l~~~---- 120 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFK----GLQHLYALVLVNN-KISKIHE-KAFS--PLRKLQKLYISKNH-LVEIPPN---- 120 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTT----TCTTCCEEECCSS-CCCEECG-GGST--TCTTCCEEECCSSC-CCSCCSS----
T ss_pred CCCeEEECCCCcCCccCHhHhh----CCCCCcEEECCCC-ccCccCH-hHhh--CcCCCCEEECCCCc-CCccCcc----
Confidence 4566666666666555333222 4677777777765 4555532 2334 66777777776653 4433211
Q ss_pred cccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccC
Q 036006 84 RNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 84 ~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c 129 (133)
.+++|++|+++++ +++.++...+ ..+++|++|++.++
T Consensus 121 ------~~~~L~~L~l~~n-~i~~~~~~~~--~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 121 ------LPSSLVELRIHDN-RIRKVPKGVF--SGLRNMNCIEMGGN 157 (332)
T ss_dssp ------CCTTCCEEECCSS-CCCCCCSGGG--SSCSSCCEEECCSC
T ss_pred ------ccccCCEEECCCC-ccCccCHhHh--CCCccCCEEECCCC
Confidence 2356666666655 3444444332 25566666666654
No 62
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.72 E-value=2.6e-08 Score=73.34 Aligned_cols=59 Identities=17% Similarity=0.230 Sum_probs=32.3
Q ss_pred CccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCC
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGC 70 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c 70 (133)
++|++|+++++.++.+....+. .+++|++|+++++ +++.+++ ..+. .+++|++|+++++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~n-~i~~~~~-~~~~--~l~~L~~L~Ls~n 84 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLR----ACANLQVLILKSS-RINTIEG-DAFY--SLGSLEHLDLSDN 84 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTS----SCTTCCEEECTTS-CCCEECT-TTTT--TCTTCCEEECTTS
T ss_pred CCccEEECcCCccCccChhhhh----cCCcccEEECCCC-CcCccCh-hhcc--ccccCCEEECCCC
Confidence 4677777777766655433222 4566666666664 4444432 1233 5556666665554
No 63
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.71 E-value=1.2e-07 Score=70.01 Aligned_cols=113 Identities=17% Similarity=0.178 Sum_probs=60.7
Q ss_pred CccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc-
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE- 82 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~- 82 (133)
+++++|++++++++.+....+. .+++|++|++++| +++.+++ ..++ .+++|++|.+.++. ++.+......
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~n-~i~~i~~-~~~~--~l~~L~~L~L~~n~-l~~~~~~~~~~ 98 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFF----SFPELQVLDLSRC-EIQTIED-GAYQ--SLSHLSTLILTGNP-IQSLALGAFSG 98 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTT----TCSSCCEEECTTC-CCCEECT-TTTT--TCTTCCEEECTTCC-CCEECTTTTTT
T ss_pred ccccEEEccCCccCccChhHhh----CCCCceEEECCCC-cCCccCc-cccc--CchhCCEEeCcCCc-CCccCHhhhcC
Confidence 3577777777766666433322 4677777777776 4566532 2334 66777777776664 4444311100
Q ss_pred ----------------ccccccccCCCccEEeecccccccc--cccCcccccCCCCccEEEEccC
Q 036006 83 ----------------KRNNNIVMFPQLQYLKMYDLKKLTS--FCTRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 83 ----------------~~~~~~~~~~~L~~L~i~~c~~L~~--l~~~~~~~~~~~~L~~L~i~~c 129 (133)
.....+..+++|++|+++++ .++. ++.. + ..+++|++|++.++
T Consensus 99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~--~~l~~L~~L~l~~n 159 (570)
T 2z63_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-F--SNLTNLEHLDLSSN 159 (570)
T ss_dssp CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG-G--GGCTTCCEEECTTS
T ss_pred ccccccccccccccccCCCccccccccccEEecCCC-ccceecChhh-h--cccCCCCEEeCcCC
Confidence 00011234556666666655 2333 2222 1 25677777777665
No 64
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.71 E-value=2e-07 Score=65.32 Aligned_cols=91 Identities=18% Similarity=0.198 Sum_probs=57.8
Q ss_pred CccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccc
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEK 83 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 83 (133)
+++++|++++++++.++.+.+. .+++|++|+++++.-.+.++. ..+. ++++++.+.+..+.+++.+....
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~----~l~~L~~L~Ls~N~i~~~i~~-~~f~--~L~~l~~~l~~~~N~l~~l~~~~--- 99 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFS----GFGDLEKIEISQNDVLEVIEA-DVFS--NLPKLHEIRIEKANNLLYINPEA--- 99 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSST----TCTTCCEEEEECCTTCCEECT-TSBC--SCTTCCEEEEEEETTCCEECTTS---
T ss_pred CCCCEEEccCCcCCCcCHHHHc----CCCCCCEEECcCCCCCCccCh-hHhh--cchhhhhhhcccCCcccccCchh---
Confidence 5788888888888887655443 578888888888765555532 3344 67777776666666677664221
Q ss_pred cccccccCCCccEEeecccccccccc
Q 036006 84 RNNNIVMFPQLQYLKMYDLKKLTSFC 109 (133)
Q Consensus 84 ~~~~~~~~~~L~~L~i~~c~~L~~l~ 109 (133)
...+++|+.|+++++ +++.++
T Consensus 100 ----f~~l~~L~~L~l~~n-~l~~~~ 120 (350)
T 4ay9_X 100 ----FQNLPNLQYLLISNT-GIKHLP 120 (350)
T ss_dssp ----BCCCTTCCEEEEEEE-CCSSCC
T ss_pred ----hhhcccccccccccc-ccccCC
Confidence 123566666666554 344444
No 65
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.71 E-value=2.6e-08 Score=63.39 Aligned_cols=107 Identities=13% Similarity=0.166 Sum_probs=77.5
Q ss_pred CccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccc
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEK 83 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 83 (133)
++|+.|+++++.++.+ ..+ ..+++|++|+++++ .++.+++ ..+. .+++|+.|+++++. +..+...
T Consensus 42 ~~L~~L~Ls~N~l~~~--~~l----~~l~~L~~L~Ls~N-~l~~~~~-~~~~--~l~~L~~L~L~~N~-i~~~~~~---- 106 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL--DGF----PLLRRLKTLLVNNN-RICRIGE-GLDQ--ALPDLTELILTNNS-LVELGDL---- 106 (176)
T ss_dssp TCCSEEECCSSCCCEE--CCC----CCCSSCCEEECCSS-CCCEECS-CHHH--HCTTCCEEECCSCC-CCCGGGG----
T ss_pred CCCCEEECCCCCCCcc--ccc----ccCCCCCEEECCCC-cccccCc-chhh--cCCCCCEEECCCCc-CCcchhh----
Confidence 5899999999988876 222 25899999999996 6777742 3345 89999999999885 5554321
Q ss_pred cccccccCCCccEEeecccccccccccC---cccccCCCCccEEEEccCC
Q 036006 84 RNNNIVMFPQLQYLKMYDLKKLTSFCTR---DVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 84 ~~~~~~~~~~L~~L~i~~c~~L~~l~~~---~~~~~~~~~L~~L~i~~c~ 130 (133)
.....+++|+.|++++++ +..++.. .+ ..+++|+.|++.+++
T Consensus 107 --~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~--~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 107 --DPLASLKSLTYLCILRNP-VTNKKHYRLYVI--YKVPQVRVLDFQKVK 151 (176)
T ss_dssp --GGGGGCTTCCEEECCSSG-GGGSTTHHHHHH--HHCTTCSEETTEECC
T ss_pred --HhhhcCCCCCEEEecCCC-CCCcHhHHHHHH--HHCCccceeCCCcCC
Confidence 123358999999999985 6666543 12 367999999887664
No 66
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.70 E-value=1.8e-07 Score=61.67 Aligned_cols=108 Identities=11% Similarity=0.066 Sum_probs=76.4
Q ss_pred CccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccc
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEK 83 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 83 (133)
+.+++|+++++.++.+..... ...+++|++|+++++ +++.+.+ ..+. .+++|++|.++++. ++.+...
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~---~~~l~~L~~L~L~~N-~i~~i~~-~~~~--~l~~L~~L~Ls~N~-l~~~~~~---- 99 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGI---FKKLPQLRKINFSNN-KITDIEE-GAFE--GASGVNEILLTSNR-LENVQHK---- 99 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCC---GGGCTTCCEEECCSS-CCCEECT-TTTT--TCTTCCEEECCSSC-CCCCCGG----
T ss_pred CCCCEEEcCCCcCCccCchhh---hccCCCCCEEECCCC-cCCEECH-HHhC--CCCCCCEEECCCCc-cCccCHh----
Confidence 457888888887776632211 125889999999885 5777743 2455 88999999998875 5554321
Q ss_pred cccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccC
Q 036006 84 RNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 84 ~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c 129 (133)
....+++|+.|+++++ +++.+....+ ..+++|++|++.++
T Consensus 100 ---~~~~l~~L~~L~Ls~N-~l~~~~~~~~--~~l~~L~~L~L~~N 139 (220)
T 2v70_A 100 ---MFKGLESLKTLMLRSN-RITCVGNDSF--IGLSSVRLLSLYDN 139 (220)
T ss_dssp ---GGTTCSSCCEEECTTS-CCCCBCTTSS--TTCTTCSEEECTTS
T ss_pred ---HhcCCcCCCEEECCCC-cCCeECHhHc--CCCccCCEEECCCC
Confidence 1235889999999987 5777765544 37899999999876
No 67
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.69 E-value=9.3e-08 Score=71.18 Aligned_cols=36 Identities=14% Similarity=0.008 Sum_probs=21.1
Q ss_pred cCCCccEEeecccccccc--cccCcccccCCCCccEEEEccC
Q 036006 90 MFPQLQYLKMYDLKKLTS--FCTRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 90 ~~~~L~~L~i~~c~~L~~--l~~~~~~~~~~~~L~~L~i~~c 129 (133)
.+++|++|+++++ +++. ++... ..+++|++|++.++
T Consensus 126 ~l~~L~~L~L~~n-~l~~~~lp~~~---~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 126 QLITLKKLNVAHN-FIHSCKLPAYF---SNLTNLVHVDLSYN 163 (606)
T ss_dssp TCTTCCEEECCSS-CCCCCCCCGGG---GTCTTCCEEECCSS
T ss_pred CCCCCCEEeCCCC-cccceechHhH---hhcCCCCEEEccCC
Confidence 4666777777665 3432 23222 25677777777765
No 68
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.69 E-value=1.7e-07 Score=68.06 Aligned_cols=60 Identities=18% Similarity=0.250 Sum_probs=31.3
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCC
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGC 70 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c 70 (133)
+++|++|+++++.+..+....+. .+++|++|.++++ .++.+.+ ..+. .+++|+.|++.++
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~l~~n-~l~~~~~-~~~~--~l~~L~~L~l~~n 162 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQ----DLYNLKSLEVGDN-DLVYISH-RAFS--GLNSLEQLTLEKC 162 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTT----TCTTCCEEEECCT-TCCEECT-TSST--TCTTCCEEEEESC
T ss_pred CCCCCEEECCCCccccCChhHcc----ccccCCEEECCCC-ccceeCh-hhcc--CCCCCCEEECCCC
Confidence 56777777777766655333222 3556666666553 3444322 1222 4455555555444
No 69
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.69 E-value=8.6e-08 Score=71.37 Aligned_cols=37 Identities=16% Similarity=0.053 Sum_probs=18.8
Q ss_pred cCCCccEEeecccccccccccCcccccCCC-CccEEEEccCC
Q 036006 90 MFPQLQYLKMYDLKKLTSFCTRDVHIIKFP-SLRKLWISRCP 130 (133)
Q Consensus 90 ~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~-~L~~L~i~~c~ 130 (133)
.+++|+.|+++++ +++.++... ..++ +|+++++.++|
T Consensus 519 ~l~~L~~L~l~~N-~l~~~p~~~---~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 519 QLYSLSTLDCSFN-RIETSKGIL---QHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TCTTCCEEECTTS-CCCCEESCG---GGSCTTCCEEECCSCC
T ss_pred CCCcCCEEECCCC-cCcccCHhH---hhhcccCcEEEccCCC
Confidence 3455566666555 355555432 1344 46666665543
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.67 E-value=7.9e-08 Score=70.39 Aligned_cols=37 Identities=8% Similarity=-0.039 Sum_probs=20.2
Q ss_pred cCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 90 MFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 90 ~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
.+++|+.|+++++ +++.++... ..+++|+.|++.+++
T Consensus 212 ~l~~L~~L~Ls~N-~l~~lp~~l---~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 212 SAAGVTWISLRNN-KLVLIEKAL---RFSQNLEHFDLRGNG 248 (487)
T ss_dssp GGTTCSEEECTTS-CCCEECTTC---CCCTTCCEEECTTCC
T ss_pred CCCCccEEEecCC-cCcccchhh---ccCCCCCEEEcCCCC
Confidence 3555666666554 355544432 245667777666654
No 71
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.67 E-value=3.5e-08 Score=75.50 Aligned_cols=106 Identities=19% Similarity=0.135 Sum_probs=80.3
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccc
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQ 81 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 81 (133)
.+++|+.|+++++.+..+.... ..+++|++|.++++ +++.++ ..+. .+++|+.|+++++. ++.++
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~-----~~l~~L~~L~Ls~N-~l~~lp--~~~~--~l~~L~~L~Ls~N~-l~~lp---- 286 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANI-----FKYDFLTRLYLNGN-SLTELP--AEIK--NLSNLRVLDLSHNR-LTSLP---- 286 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGG-----GGCCSCSCCBCTTS-CCSCCC--GGGG--GGTTCCEEECTTSC-CSSCC----
T ss_pred cCCCCcEEECCCCCCCCCChhh-----cCCCCCCEEEeeCC-cCcccC--hhhh--CCCCCCEEeCcCCc-CCccC----
Confidence 3578899999999777664332 25899999999986 566664 2345 89999999999885 66542
Q ss_pred cccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 82 EKRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 82 ~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
..+..+++|+.|+++++ +++.+|... ..+++|+.|++.+++
T Consensus 287 ----~~~~~l~~L~~L~L~~N-~l~~lp~~~---~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 287 ----AELGSCFQLKYFYFFDN-MVTTLPWEF---GNLCNLQFLGVEGNP 327 (727)
T ss_dssp ----SSGGGGTTCSEEECCSS-CCCCCCSST---TSCTTCCCEECTTSC
T ss_pred ----hhhcCCCCCCEEECCCC-CCCccChhh---hcCCCccEEeCCCCc
Confidence 22336899999999988 688888753 378999999998875
No 72
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.66 E-value=1e-07 Score=65.33 Aligned_cols=35 Identities=17% Similarity=0.388 Sum_probs=19.0
Q ss_pred cCCCccEEeecccccccccccCcccccCCCCccEEEEccC
Q 036006 90 MFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 90 ~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c 129 (133)
.+++|+.|+++++ +++.++. + ..+++|++|.+.++
T Consensus 154 ~l~~L~~L~L~~N-~l~~~~~--l--~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 154 RLTKLDTLSLEDN-QISDIVP--L--AGLTKLQNLYLSKN 188 (291)
T ss_dssp GCTTCSEEECCSS-CCCCCGG--G--TTCTTCCEEECCSS
T ss_pred cCCCCCEEEccCC-ccccchh--h--cCCCccCEEECCCC
Confidence 3555666666555 3444433 1 25567777766655
No 73
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.66 E-value=1.6e-07 Score=64.35 Aligned_cols=18 Identities=22% Similarity=0.145 Sum_probs=12.2
Q ss_pred CCccceeeeccceeeeec
Q 036006 3 LPKLENLELRSINVERIW 20 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~ 20 (133)
+++|++|+++++.+..+.
T Consensus 77 ~~~L~~L~Ls~n~i~~l~ 94 (306)
T 2z66_A 77 TTSLKYLDLSFNGVITMS 94 (306)
T ss_dssp CSCCCEEECCSCSEEEEE
T ss_pred ccccCEEECCCCccccCh
Confidence 567777777777665553
No 74
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.64 E-value=1.2e-07 Score=65.01 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=38.0
Q ss_pred ccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 58 IFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 58 ~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
.+++|+.|.++++. ++.+. ....+++|+.|+++++ +++.++. + ..+++|+.|++.+++
T Consensus 154 ~l~~L~~L~L~~N~-l~~~~---------~l~~l~~L~~L~L~~N-~i~~l~~--l--~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 154 RLTKLDTLSLEDNQ-ISDIV---------PLAGLTKLQNLYLSKN-HISDLRA--L--AGLKNLDVLELFSQE 211 (291)
T ss_dssp GCTTCSEEECCSSC-CCCCG---------GGTTCTTCCEEECCSS-CCCBCGG--G--TTCTTCSEEEEEEEE
T ss_pred cCCCCCEEEccCCc-cccch---------hhcCCCccCEEECCCC-cCCCChh--h--ccCCCCCEEECcCCc
Confidence 44555555555442 33322 1335889999999988 5777754 2 378999999998753
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.64 E-value=1.1e-07 Score=69.55 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=41.7
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEE
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEI 76 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i 76 (133)
+++|++|+++++.+..+.+..+. .+++|++|+++++ .++..++ +. .+++|+.|+++++. +..+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~N-~l~~~~~---l~--~l~~L~~L~Ls~N~-l~~l 95 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLA----PFTKLELLNLSSN-VLYETLD---LE--SLSTLRTLDLNNNY-VQEL 95 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGT----TCTTCCEEECTTS-CCEEEEE---CT--TCTTCCEEECCSSE-EEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHh----CCCCCCEEEeeCC-CCCCCcc---cc--cCCCCCEEEecCCc-CCCC
Confidence 45888899988877766443332 5788888888876 4555432 44 67777777777663 4443
No 76
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.64 E-value=3.5e-07 Score=64.41 Aligned_cols=108 Identities=19% Similarity=0.201 Sum_probs=80.4
Q ss_pred CccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccc
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEK 83 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 83 (133)
++++.|++++++++.+....+. ..+++|++|+++++ +++.+++ ..+. .+++|+.|+++++. ++.+...
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~---~~l~~L~~L~L~~N-~i~~i~~-~~~~--~l~~L~~L~Ls~N~-l~~~~~~---- 106 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTP---TRLTNLHSLLLSHN-HLNFISS-EAFV--PVPNLRYLDLSSNH-LHTLDEF---- 106 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSS---SCCTTCCEEECCSS-CCCEECT-TTTT--TCTTCCEEECCSSC-CCEECTT----
T ss_pred CCCCEEECCCCCCCccChhhhh---hcccccCEEECCCC-cCCccCh-hhcc--CCCCCCEEECCCCc-CCcCCHH----
Confidence 4588999999988877544321 14899999999985 6777743 2355 88999999999875 7776422
Q ss_pred cccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccC
Q 036006 84 RNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 84 ~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c 129 (133)
....+++|+.|+++++ +++.+....+ ..+++|++|++.++
T Consensus 107 ---~~~~l~~L~~L~L~~N-~i~~~~~~~~--~~l~~L~~L~L~~N 146 (361)
T 2xot_A 107 ---LFSDLQALEVLLLYNN-HIVVVDRNAF--EDMAQLQKLYLSQN 146 (361)
T ss_dssp ---TTTTCTTCCEEECCSS-CCCEECTTTT--TTCTTCCEEECCSS
T ss_pred ---HhCCCcCCCEEECCCC-cccEECHHHh--CCcccCCEEECCCC
Confidence 1225889999999987 5777765554 37899999999775
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.63 E-value=1.3e-07 Score=65.29 Aligned_cols=110 Identities=15% Similarity=0.202 Sum_probs=57.1
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccc
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQ 81 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 81 (133)
.+++|++|+++++.++.+.. ...+++|++|+++++ .++.++ .+. .+++|+.|+++++. ++.+.....
T Consensus 105 ~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n-~l~~~~---~l~--~l~~L~~L~l~~n~-l~~~~~l~~ 171 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDVTP------LAGLSNLQVLYLDLN-QITNIS---PLA--GLTNLQYLSIGNAQ-VSDLTPLAN 171 (308)
T ss_dssp TCTTCCEEECTTSCCCCCGG------GTTCTTCCEEECCSS-CCCCCG---GGG--GCTTCCEEECCSSC-CCCCGGGTT
T ss_pred CCCCCCEEECCCCCCCCchh------hcCCCCCCEEECCCC-ccCcCc---ccc--CCCCccEEEccCCc-CCCChhhcC
Confidence 35678888888776665521 124667777777665 344442 133 56666666666552 333221000
Q ss_pred c-------------ccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccC
Q 036006 82 E-------------KRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 82 ~-------------~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c 129 (133)
. ........+++|+.|+++++ +++.++. + ..+++|++|++.++
T Consensus 172 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N-~l~~~~~--l--~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDISPLASLPNLIEVHLKNN-QISDVSP--L--ANTSNLFIVTLTNQ 227 (308)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTS-CCCBCGG--G--TTCTTCCEEEEEEE
T ss_pred CCCCCEEECCCCccCcChhhcCCCCCCEEEccCC-ccCcccc--c--cCCCCCCEEEccCC
Confidence 0 00001224566666666665 3444442 1 25677777776654
No 78
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.63 E-value=1.2e-07 Score=65.72 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=62.5
Q ss_pred CccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccc--
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQ-- 81 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~-- 81 (133)
++|+.|++++++++.+....+. .+++|++|+++++ +++.+.+ ..+. .+++|++|+++++. ++.++....
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~~-~~~~--~l~~L~~L~Ls~n~-l~~l~~~~~~~ 122 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFK----NLKNLHTLILINN-KISKISP-GAFA--PLVKLERLYLSKNQ-LKELPEKMPKT 122 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTT----TCTTCCEEECCSS-CCCCBCT-TTTT--TCTTCCEEECCSSC-CSBCCSSCCTT
T ss_pred CCCeEEECCCCcCCEeChhhhc----cCCCCCEEECCCC-cCCeeCH-HHhc--CCCCCCEEECCCCc-CCccChhhccc
Confidence 5677778877776666433322 4788888888875 4555533 2344 77888888887764 443321100
Q ss_pred ---------c---ccccccccCCCccEEeecccccccc--cccCcccccCCCCccEEEEccC
Q 036006 82 ---------E---KRNNNIVMFPQLQYLKMYDLKKLTS--FCTRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 82 ---------~---~~~~~~~~~~~L~~L~i~~c~~L~~--l~~~~~~~~~~~~L~~L~i~~c 129 (133)
. ..+.....+++|+.|+++++. ++. .....+ ..+++|++|.+.++
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~--~~l~~L~~L~l~~n 181 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAF--QGMKKLSYIRIADT 181 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGG--GGCTTCCEEECCSS
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhc--cCCCCcCEEECCCC
Confidence 0 000112235566666666552 322 111122 35677777777665
No 79
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.63 E-value=3.4e-07 Score=68.16 Aligned_cols=17 Identities=18% Similarity=0.497 Sum_probs=10.3
Q ss_pred CCccceeeeccceeeee
Q 036006 3 LPKLENLELRSINVERI 19 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~ 19 (133)
+++|++|+++++.++.+
T Consensus 277 l~~L~~L~l~~n~l~~l 293 (606)
T 3t6q_A 277 FSGLQELDLTATHLSEL 293 (606)
T ss_dssp CTTCSEEECTTSCCSCC
T ss_pred ccCCCEEeccCCccCCC
Confidence 45666666666655544
No 80
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.62 E-value=4e-07 Score=70.59 Aligned_cols=115 Identities=13% Similarity=0.029 Sum_probs=63.4
Q ss_pred CccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc-
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE- 82 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~- 82 (133)
++|+.|+++++.++.+....+. .+++|++|+++++.....+.+ ..+. .+++|++|+++++. +..+......
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~----~l~~L~~LdLs~n~~~~~i~~-~~f~--~L~~L~~L~Ls~N~-l~~~~p~~~~~ 95 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFP----FLEQLQLLELGSQYTPLTIDK-EAFR--NLPNLRILDLGSSK-IYFLHPDAFQG 95 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCS----SCCSCSEEEECTTCCCCEECT-TTTS--SCTTCCEEECTTCC-CCEECTTSSCS
T ss_pred CCcCEEECCCCcCCccChhHCc----ccccCeEEeCCCCCCccccCH-HHhc--CCCCCCEEECCCCc-CcccCHhHccC
Confidence 5778888888877766443332 477778888877765555532 2334 67777777777664 4444211100
Q ss_pred --------------cc--cc--ccccCCCccEEeecccccccccccC-cccccCCCCccEEEEccC
Q 036006 83 --------------KR--NN--NIVMFPQLQYLKMYDLKKLTSFCTR-DVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 83 --------------~~--~~--~~~~~~~L~~L~i~~c~~L~~l~~~-~~~~~~~~~L~~L~i~~c 129 (133)
.+ +. ....+++|+.|+++++ +++.+... .+ ..+++|++|++.++
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~--~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSF--GKLNSLKSIDFSSN 158 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGG--GTCSSCCEEEEESS
T ss_pred CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhH--hhCCCCCEEECCCC
Confidence 00 00 1234566666666665 23333221 12 35677777777665
No 81
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.62 E-value=1.4e-07 Score=70.84 Aligned_cols=35 Identities=17% Similarity=0.388 Sum_probs=18.8
Q ss_pred cCCCccEEeecccccccccccCcccccCCCCccEEEEccC
Q 036006 90 MFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 90 ~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c 129 (133)
.+++|+.|+++++ .++.++. + ..+++|+.|.+.+|
T Consensus 151 ~l~~L~~L~Ls~N-~l~~~~~--l--~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 151 RLTKLDTLSLEDN-QISDIVP--L--AGLTKLQNLYLSKN 185 (605)
T ss_dssp SCTTCSEEECCSS-CCCCCGG--G--TTCTTCCEEECCSS
T ss_pred ccCCCCEEECcCC-cCCCchh--h--ccCCCCCEEECcCC
Confidence 3555666666555 3444332 1 25667777766665
No 82
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.62 E-value=3.5e-07 Score=63.42 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=30.6
Q ss_pred ccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccC
Q 036006 58 IFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 58 ~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c 129 (133)
.+++|+.|+++++. +..+.. .....+++|+.|+++++ +++.++... ..+++|++|++.++
T Consensus 214 ~l~~L~~L~Ls~n~-l~~~~~-------~~~~~l~~L~~L~L~~N-~l~~lp~~l---~~l~~L~~L~l~~N 273 (330)
T 1xku_A 214 GLNNLAKLGLSFNS-ISAVDN-------GSLANTPHLRELHLNNN-KLVKVPGGL---ADHKYIQVVYLHNN 273 (330)
T ss_dssp TCTTCCEEECCSSC-CCEECT-------TTGGGSTTCCEEECCSS-CCSSCCTTT---TTCSSCCEEECCSS
T ss_pred CCCCCCEEECCCCc-CceeCh-------hhccCCCCCCEEECCCC-cCccCChhh---ccCCCcCEEECCCC
Confidence 55666666666553 444321 11223556666666655 355554432 24556666665544
No 83
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.61 E-value=3.2e-07 Score=68.32 Aligned_cols=113 Identities=18% Similarity=0.106 Sum_probs=56.7
Q ss_pred ccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc--
Q 036006 5 KLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE-- 82 (133)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~-- 82 (133)
++++|+++++.++.+.+..+. .+++|++|+++++ +++.+.+ ..+. .+++|++|+++++. +..+......
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~Ls~n-~i~~~~~-~~~~--~l~~L~~L~Ls~n~-l~~~~~~~~~~l 104 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFS----RLINLTFLDLTRC-QIYWIHE-DTFQ--SQHRLDTLVLTANP-LIFMAETALSGP 104 (606)
T ss_dssp TCCEEECTTCCCSEECTTTST----TCTTCSEEECTTC-CCCEECT-TTTT--TCTTCCEEECTTCC-CSEECTTTTSSC
T ss_pred cCcEEEccCCccCcCChhHhc----cCccceEEECCCC-ccceeCh-hhcc--CccccCeeeCCCCc-ccccChhhhccc
Confidence 567777777766665433332 4667777777665 3444432 2233 56667776666653 3333211000
Q ss_pred ---------------ccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccC
Q 036006 83 ---------------KRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 83 ---------------~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c 129 (133)
..+.....+++|++|+++++ +++.++.... ..+++|++|++.++
T Consensus 105 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~--~~l~~L~~L~L~~n 163 (606)
T 3t6q_A 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKG--FPTEKLKVLDFQNN 163 (606)
T ss_dssp TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTT--CCCTTCCEEECCSS
T ss_pred ccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccc--cCCcccCEEEcccC
Confidence 00112224556666666655 2444322221 23567777776655
No 84
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.60 E-value=2.1e-07 Score=62.92 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=28.7
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCC
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGC 70 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c 70 (133)
+++|++|++.+++++.+. .. ..+++|++|+++++ .++.+++ +. .+++|+.|+++++
T Consensus 40 l~~L~~L~l~~n~i~~l~--~l----~~l~~L~~L~L~~N-~i~~~~~---l~--~l~~L~~L~L~~N 95 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA--GM----QFFTNLKELHLSHN-QISDLSP---LK--DLTKLEELSVNRN 95 (263)
T ss_dssp HTTCSEEECTTSCCCCCT--TG----GGCTTCCEEECCSS-CCCCCGG---GT--TCSSCCEEECCSS
T ss_pred cCcCcEEECcCCCcccch--HH----hhCCCCCEEECCCC-ccCCChh---hc--cCCCCCEEECCCC
Confidence 355666666666555442 11 13556666666554 3444421 33 5555555555544
No 85
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.60 E-value=2.7e-07 Score=68.34 Aligned_cols=105 Identities=17% Similarity=0.170 Sum_probs=68.3
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
.++|++|+++++.+..+....+. .+++|++|+++++ +++.+.+ ..+. .+++|++|+++++. ++.++..
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~----~l~~L~~L~Ls~N-~l~~~~~-~~~~--~l~~L~~L~Ls~N~-l~~lp~~--- 118 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDIS----FLSELRVLRLSHN-RIRSLDF-HVFL--FNQDLEYLDVSHNR-LQNISCC--- 118 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTT----TCTTCCEEECCSC-CCCEECT-TTTT--TCTTCCEEECTTSC-CCEECSC---
T ss_pred CCCcCEEECCCCCccccChhhhc----cCCCccEEECCCC-CCCcCCH-HHhC--CCCCCCEEECCCCc-CCccCcc---
Confidence 36788888888877766543332 5788999999886 6777643 3345 78889999988875 6666432
Q ss_pred ccccccccCCCccEEeeccccccccccc-CcccccCCCCccEEEEccC
Q 036006 83 KRNNNIVMFPQLQYLKMYDLKKLTSFCT-RDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 83 ~~~~~~~~~~~L~~L~i~~c~~L~~l~~-~~~~~~~~~~L~~L~i~~c 129 (133)
.+++|++|+++++ +++.++. ..+ ..+++|++|++.++
T Consensus 119 -------~l~~L~~L~Ls~N-~l~~l~~p~~~--~~l~~L~~L~L~~n 156 (562)
T 3a79_B 119 -------PMASLRHLDLSFN-DFDVLPVCKEF--GNLTKLTFLGLSAA 156 (562)
T ss_dssp -------CCTTCSEEECCSS-CCSBCCCCGGG--GGCTTCCEEEEECS
T ss_pred -------ccccCCEEECCCC-CccccCchHhh--cccCcccEEecCCC
Confidence 2667777777766 3554432 122 25566666666553
No 86
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.60 E-value=2.9e-07 Score=67.44 Aligned_cols=120 Identities=18% Similarity=0.201 Sum_probs=67.2
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcce-eccCccccccccCcccEEEEeCCC---------
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRC-LFSSSILSNSIFVRLQHLEIWGCP--------- 71 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~-~~~~~~~~~~~l~~L~~L~i~~c~--------- 71 (133)
.+++|++|+++++.+..+... +.....+++|++|+++++. ++. ++. ..+. .+++|+.|+++++.
T Consensus 346 ~l~~L~~L~L~~N~l~~l~~~--~~~~~~l~~L~~L~Ls~N~-l~~~l~~-~~~~--~l~~L~~L~Ls~N~l~~~~~~~l 419 (520)
T 2z7x_B 346 HLTELETLILQMNQLKELSKI--AEMTTQMKSLQQLDISQNS-VSYDEKK-GDCS--WTKSLLSLNMSSNILTDTIFRCL 419 (520)
T ss_dssp CCSSCCEEECCSSCCCBHHHH--HHHHTTCTTCCEEECCSSC-CBCCGGG-CSCC--CCTTCCEEECCSSCCCGGGGGSC
T ss_pred cCCCCCEEEccCCccCccccc--hHHHhhCCCCCEEECCCCc-CCccccc-chhc--cCccCCEEECcCCCCCcchhhhh
Confidence 367788888887766643210 0011246777777777753 333 421 2233 55566666665552
Q ss_pred --CceEEcccccc--ccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 72 --VLEEIIIVDQE--KRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 72 --~l~~i~~~~~~--~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
+++.+...... .-+..+..+++|+.|+++++ +++.++...+ ..+++|++|++.+++
T Consensus 420 ~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~--~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 420 PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIF--DRLTSLQKIWLHTNP 479 (520)
T ss_dssp CTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTT--TTCTTCCEEECCSSC
T ss_pred cccCCEEECCCCcccccchhhhcCCCCCEEECCCC-cCCccCHHHh--ccCCcccEEECcCCC
Confidence 12221110000 01222335788999999887 6777776543 367899999988765
No 87
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.59 E-value=2.1e-07 Score=62.89 Aligned_cols=101 Identities=17% Similarity=0.164 Sum_probs=73.4
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccc
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQ 81 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 81 (133)
.+++|++|+++++.++.+.. ...+++|++|+++++ +++.++ ... . ++|+.|+++++. ++.+.
T Consensus 61 ~l~~L~~L~L~~N~i~~~~~------l~~l~~L~~L~L~~N-~l~~l~---~~~--~-~~L~~L~L~~N~-l~~~~---- 122 (263)
T 1xeu_A 61 FFTNLKELHLSHNQISDLSP------LKDLTKLEELSVNRN-RLKNLN---GIP--S-ACLSRLFLDNNE-LRDTD---- 122 (263)
T ss_dssp GCTTCCEEECCSSCCCCCGG------GTTCSSCCEEECCSS-CCSCCT---TCC--C-SSCCEEECCSSC-CSBSG----
T ss_pred hCCCCCEEECCCCccCCChh------hccCCCCCEEECCCC-ccCCcC---ccc--c-CcccEEEccCCc-cCCCh----
Confidence 46789999999988777643 125899999999886 566653 233 4 889999999884 65542
Q ss_pred cccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 82 EKRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 82 ~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
.+..+++|+.|+++++ +++.++. + ..+++|++|++.++.
T Consensus 123 -----~l~~l~~L~~L~Ls~N-~i~~~~~--l--~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 123 -----SLIHLKNLEILSIRNN-KLKSIVM--L--GFLSKLEVLDLHGNE 161 (263)
T ss_dssp -----GGTTCTTCCEEECTTS-CCCBCGG--G--GGCTTCCEEECTTSC
T ss_pred -----hhcCcccccEEECCCC-cCCCChH--H--ccCCCCCEEECCCCc
Confidence 1225889999999887 4777652 2 367999999988764
No 88
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.58 E-value=1.5e-07 Score=70.71 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=28.7
Q ss_pred cccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 88 IVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 88 ~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
+..+++|+.|+++++ +++.++. + ..+++|+.|.+.+|+
T Consensus 171 l~~l~~L~~L~Ls~N-~i~~l~~--l--~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKN-HISDLRA--L--AGLKNLDVLELFSQE 208 (605)
T ss_dssp GTTCTTCCEEECCSS-CCCBCGG--G--TTCTTCSEEECCSEE
T ss_pred hccCCCCCEEECcCC-CCCCChH--H--ccCCCCCEEEccCCc
Confidence 336889999999988 5777643 2 368999999988763
No 89
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.58 E-value=1.7e-07 Score=70.75 Aligned_cols=12 Identities=17% Similarity=0.016 Sum_probs=6.2
Q ss_pred CCCccEEeeccc
Q 036006 91 FPQLQYLKMYDL 102 (133)
Q Consensus 91 ~~~L~~L~i~~c 102 (133)
+++|++|+++++
T Consensus 120 l~~L~~L~Ls~n 131 (680)
T 1ziw_A 120 QKNLITLDLSHN 131 (680)
T ss_dssp CTTCCEEECCSS
T ss_pred cCCCCEEECCCC
Confidence 445555555544
No 90
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.56 E-value=3.3e-07 Score=66.48 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=7.7
Q ss_pred CCccceeeeccceee
Q 036006 3 LPKLENLELRSINVE 17 (133)
Q Consensus 3 l~~L~~L~l~~~~l~ 17 (133)
+++|++|+++++.+.
T Consensus 242 l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 242 LTNLTDLDLANNQIS 256 (466)
T ss_dssp CTTCSEEECCSSCCC
T ss_pred CCCCCEEECCCCccc
Confidence 345555555555443
No 91
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.56 E-value=3e-07 Score=69.30 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=25.6
Q ss_pred cccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 88 IVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 88 ~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
+..+++|+.|+++++. +..+|... .++|++|++.+++
T Consensus 562 l~~l~~L~~L~Ls~N~-l~~ip~~~-----~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 562 ITLCPSLTQLQIGSND-IRKVNEKI-----TPNISVLDIKDNP 598 (636)
T ss_dssp GGGCSSCCEEECCSSC-CCBCCSCC-----CTTCCEEECCSCT
T ss_pred HhcCCCCCEEECCCCc-CCccCHhH-----hCcCCEEECcCCC
Confidence 3457788888887773 56666542 2788888888775
No 92
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.55 E-value=1.9e-07 Score=68.68 Aligned_cols=61 Identities=28% Similarity=0.304 Sum_probs=32.1
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCC
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGC 70 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c 70 (133)
.+++|++|+++++.+..+....+. .+++|++|+++++ .++.+++ ..++ .+++|++|+++++
T Consensus 48 ~l~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~Ls~n-~l~~~~~-~~~~--~l~~L~~L~Ls~n 108 (549)
T 2z81_A 48 ACANLQVLILKSSRINTIEGDAFY----SLGSLEHLDLSDN-HLSSLSS-SWFG--PLSSLKYLNLMGN 108 (549)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTT----TCTTCCEEECTTS-CCCSCCH-HHHT--TCTTCCEEECTTC
T ss_pred cCCcccEEECCCCCcCccChhhcc----ccccCCEEECCCC-ccCccCH-HHhc--cCCCCcEEECCCC
Confidence 356777777777766665433222 3566666666654 3333321 1123 4555555555544
No 93
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.52 E-value=5.2e-07 Score=68.08 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=17.2
Q ss_pred CCCccEEeecccccccccccCcccccCCCCccEEEEccC
Q 036006 91 FPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 91 ~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c 129 (133)
+++|+.|+++++ +++.++...+ ..+++|++|++.++
T Consensus 559 l~~L~~L~Ls~N-~l~~l~~~~~--~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 559 LFELKIIDLGLN-NLNTLPASVF--NNQVSLKSLNLQKN 594 (680)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTT--TTCTTCCEEECTTS
T ss_pred ccCcceeECCCC-CCCcCCHhHh--CCCCCCCEEECCCC
Confidence 455555555443 3444444332 24455555555443
No 94
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.50 E-value=4e-07 Score=66.69 Aligned_cols=104 Identities=15% Similarity=0.175 Sum_probs=63.5
Q ss_pred CccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccc
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEK 83 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 83 (133)
++|++|+++++.++.+....+. .+++|++|+++++ +++.+.+ ..++ .+++|++|+++++. ++.++..
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~Ls~n-~l~~~~~-~~~~--~l~~L~~L~Ls~N~-l~~lp~~---- 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDIL----SLSKLRILIISHN-RIQYLDI-SVFK--FNQELEYLDLSHNK-LVKISCH---- 87 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHT----TCTTCCEEECCSS-CCCEEEG-GGGT--TCTTCCEEECCSSC-CCEEECC----
T ss_pred ccccEEECCCCcccccChhhcc----ccccccEEecCCC-ccCCcCh-HHhh--cccCCCEEecCCCc-eeecCcc----
Confidence 5788888888877766433222 5788888888886 4666533 2344 78888888888774 6666432
Q ss_pred cccccccCCCccEEeeccccccccccc-CcccccCCCCccEEEEccC
Q 036006 84 RNNNIVMFPQLQYLKMYDLKKLTSFCT-RDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 84 ~~~~~~~~~~L~~L~i~~c~~L~~l~~-~~~~~~~~~~L~~L~i~~c 129 (133)
.+++|++|+++++ +++.++. ..+ ..+++|++|++.++
T Consensus 88 ------~l~~L~~L~L~~N-~l~~~~~p~~~--~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 88 ------PTVNLKHLDLSFN-AFDALPICKEF--GNMSQLKFLGLSTT 125 (520)
T ss_dssp ------CCCCCSEEECCSS-CCSSCCCCGGG--GGCTTCCEEEEEES
T ss_pred ------ccCCccEEeccCC-ccccccchhhh--ccCCcceEEEecCc
Confidence 2666777776665 2443221 111 24566666666554
No 95
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.50 E-value=4.8e-07 Score=70.63 Aligned_cols=38 Identities=24% Similarity=0.234 Sum_probs=26.4
Q ss_pred ccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 87 NIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 87 ~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
.+..+++|+.|+++++. +..+|... .++|+.|++.+|+
T Consensus 801 ~l~~L~~L~~L~Ls~N~-L~~Ip~~l-----~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSND-IRKVDEKL-----TPQLYILDIADNP 838 (876)
T ss_dssp TGGGCSSCCEEECCSSC-CCBCCSCC-----CSSSCEEECCSCT
T ss_pred HHhcCCCCCEEECCCCC-CCccCHhh-----cCCCCEEECCCCC
Confidence 33457788888888773 56666543 2688888888876
No 96
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.50 E-value=4.2e-07 Score=63.07 Aligned_cols=13 Identities=15% Similarity=0.194 Sum_probs=6.6
Q ss_pred ccCcccEEEEeCC
Q 036006 58 IFVRLQHLEIWGC 70 (133)
Q Consensus 58 ~l~~L~~L~i~~c 70 (133)
.+++|+.|+++++
T Consensus 239 ~l~~L~~L~L~~N 251 (332)
T 2ft3_A 239 FLPTLRELHLDNN 251 (332)
T ss_dssp GCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC
Confidence 4455555555544
No 97
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.48 E-value=7.4e-07 Score=68.46 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=8.4
Q ss_pred CCccceeeeccceee
Q 036006 3 LPKLENLELRSINVE 17 (133)
Q Consensus 3 l~~L~~L~l~~~~l~ 17 (133)
+++|++|++.+|.+.
T Consensus 393 ~~~L~~L~L~~n~l~ 407 (768)
T 3rgz_A 393 KNTLQELYLQNNGFT 407 (768)
T ss_dssp TCCCCEEECCSSEEE
T ss_pred cCCccEEECCCCccc
Confidence 445666666666444
No 98
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.47 E-value=4.9e-07 Score=69.43 Aligned_cols=117 Identities=16% Similarity=-0.024 Sum_probs=56.9
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCce-EEcccc
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLE-EIIIVD 80 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~-~i~~~~ 80 (133)
.+++|++|+++++.+....+..+ ..+++|++|.++++.-...+ + ..+. .+++|+.|+++++. +. .++..-
T Consensus 416 ~l~~L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L~L~~n~l~~~~-p-~~~~--~l~~L~~L~L~~N~-l~~~~p~~l 486 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGTIPSSL----GSLSKLRDLKLWLNMLEGEI-P-QELM--YVKTLETLILDFND-LTGEIPSGL 486 (768)
T ss_dssp GCTTCCEEECCSSEEESCCCGGG----GGCTTCCEEECCSSCCCSCC-C-GGGG--GCTTCCEEECCSSC-CCSCCCGGG
T ss_pred cCCCCCEEECcCCcccCcccHHH----hcCCCCCEEECCCCcccCcC-C-HHHc--CCCCceEEEecCCc-ccCcCCHHH
Confidence 35678888888886654322221 13566666666665322222 1 1222 44555555555442 11 110000
Q ss_pred c----------------cccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 81 Q----------------EKRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 81 ~----------------~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
. ...+..+..+++|+.|+++++.-...++... ..+++|+.|++.+|+
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l---~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL---GDCRSLIWLDLNTNL 549 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG---GGCTTCCEEECCSSE
T ss_pred hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH---cCCCCCCEEECCCCc
Confidence 0 0012223356777777777764332444332 256777777777653
No 99
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.47 E-value=7.3e-07 Score=61.59 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=27.0
Q ss_pred ccceeeeccceeee--ecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCC
Q 036006 5 KLENLELRSINVER--IWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGC 70 (133)
Q Consensus 5 ~L~~L~l~~~~l~~--~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c 70 (133)
+++.|+++++++.. ..+. ....+++|++|+++++.++....+ ..+. .+++|++|+++++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~----~l~~l~~L~~L~L~~~n~l~~~~p-~~l~--~l~~L~~L~Ls~n 111 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPS----SLANLPYLNFLYIGGINNLVGPIP-PAIA--KLTQLHYLYITHT 111 (313)
T ss_dssp CEEEEEEECCCCSSCEECCG----GGGGCTTCSEEEEEEETTEESCCC-GGGG--GCTTCSEEEEEEE
T ss_pred eEEEEECCCCCccCCcccCh----hHhCCCCCCeeeCCCCCcccccCC-hhHh--cCCCCCEEECcCC
Confidence 45566666554442 1111 111355666666654344443222 1223 5555666555544
No 100
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.47 E-value=7.1e-07 Score=66.10 Aligned_cols=112 Identities=16% Similarity=0.229 Sum_probs=64.0
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcce-eccCccccccccCcccEEEEeCCC---------
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRC-LFSSSILSNSIFVRLQHLEIWGCP--------- 71 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~-~~~~~~~~~~~l~~L~~L~i~~c~--------- 71 (133)
.+++|++|+++++.++.+.... .....+++|++|+++++. ++. ++ ...+. .+++|+.|+++++.
T Consensus 375 ~l~~L~~L~L~~N~l~~~~~~~--~~~~~l~~L~~L~l~~N~-l~~~~~-~~~~~--~l~~L~~L~l~~n~l~~~~~~~l 448 (562)
T 3a79_B 375 TLKRLQTLILQRNGLKNFFKVA--LMTKNMSSLETLDVSLNS-LNSHAY-DRTCA--WAESILVLNLSSNMLTGSVFRCL 448 (562)
T ss_dssp SCSSCCEEECCSSCCCBTTHHH--HTTTTCTTCCEEECTTSC-CBSCCS-SCCCC--CCTTCCEEECCSSCCCGGGGSSC
T ss_pred ccCCCCEEECCCCCcCCcccch--hhhcCCCCCCEEECCCCc-CCCccC-hhhhc--CcccCCEEECCCCCCCcchhhhh
Confidence 4678888888888766542211 011246777888777753 443 32 22333 55666666665553
Q ss_pred ------------CceEEccccccccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 72 ------------VLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 72 ------------~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
.++.+ +..+..+++|+.|+++++ +++.++...+ ..+++|++|++.++|
T Consensus 449 ~~~L~~L~L~~N~l~~i--------p~~~~~l~~L~~L~L~~N-~l~~l~~~~~--~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 449 PPKVKVLDLHNNRIMSI--------PKDVTHLQALQELNVASN-QLKSVPDGVF--DRLTSLQYIWLHDNP 508 (562)
T ss_dssp CTTCSEEECCSSCCCCC--------CTTTTSSCCCSEEECCSS-CCCCCCTTST--TTCTTCCCEECCSCC
T ss_pred cCcCCEEECCCCcCccc--------ChhhcCCCCCCEEECCCC-CCCCCCHHHH--hcCCCCCEEEecCCC
Confidence 12222 112224677777777776 4666666533 367788888777664
No 101
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.47 E-value=2e-07 Score=70.22 Aligned_cols=119 Identities=17% Similarity=0.151 Sum_probs=68.7
Q ss_pred CCCccceeeeccceeeee-----ccc--------ccccccc--cCCCccEEEEecCCCcceeccCccccccccCcccEEE
Q 036006 2 ALPKLENLELRSINVERI-----WQN--------QVSALSC--GVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLE 66 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~-----~~~--------~~~~~~~--~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~ 66 (133)
.+++|++|+++++.++.. |.. ..+.... .+++|++|.+++|.-...++ ..+. .+++|+.|+
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p--~~l~--~l~~L~~L~ 279 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP--TFLK--ALPEMQLIN 279 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC--TTTT--TCSSCCEEE
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh--HHHh--cCCCCCEEE
Confidence 468899999999977651 000 0222233 58899999999986555553 3445 789999999
Q ss_pred EeCCCCceE--EccccccccccccccCCCccEEeeccccccccccc-CcccccCCCCccEEEEccC
Q 036006 67 IWGCPVLEE--IIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFCT-RDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 67 i~~c~~l~~--i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~-~~~~~~~~~~L~~L~i~~c 129 (133)
++++..++. ++..-+.. .....+++|+.|+++++ +++.++. ..+ ..+++|++|++.++
T Consensus 280 Ls~n~~l~~~~lp~~~~~L--~~~~~l~~L~~L~L~~n-~l~~ip~~~~l--~~l~~L~~L~L~~N 340 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQAL--ADAPVGEKIQIIYIGYN-NLKTFPVETSL--QKMKKLGMLECLYN 340 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHH--HHSGGGGTCCEEECCSS-CCSSCCCHHHH--TTCTTCCEEECCSC
T ss_pred CcCCCCCccccchHHHHhh--hccccCCCCCEEECCCC-cCCccCchhhh--ccCCCCCEEeCcCC
Confidence 998864443 22111000 00012366777777665 3555544 111 24566666666554
No 102
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.47 E-value=7.1e-07 Score=61.67 Aligned_cols=85 Identities=19% Similarity=0.158 Sum_probs=49.0
Q ss_pred CCCccceeeecc-ceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccc
Q 036006 2 ALPKLENLELRS-INVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVD 80 (133)
Q Consensus 2 ~l~~L~~L~l~~-~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~ 80 (133)
.+++|++|++++ +++....+..+ ..+++|++|+++++ +++...+ ..+. .+++|++|+++++. +....
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l----~~l~~L~~L~Ls~n-~l~~~~p-~~~~--~l~~L~~L~Ls~N~-l~~~~--- 141 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAI----AKLTQLHYLYITHT-NVSGAIP-DFLS--QIKTLVTLDFSYNA-LSGTL--- 141 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGG----GGCTTCSEEEEEEE-CCEEECC-GGGG--GCTTCCEEECCSSE-EESCC---
T ss_pred CCCCCCeeeCCCCCcccccCChhH----hcCCCCCEEECcCC-eeCCcCC-HHHh--CCCCCCEEeCCCCc-cCCcC---
Confidence 367888888886 45553322222 25788888888875 3443322 2344 67888888887763 33111
Q ss_pred ccccccccccCCCccEEeeccc
Q 036006 81 QEKRNNNIVMFPQLQYLKMYDL 102 (133)
Q Consensus 81 ~~~~~~~~~~~~~L~~L~i~~c 102 (133)
+..+..+++|+.|+++++
T Consensus 142 ----p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 142 ----PPSISSLPNLVGITFDGN 159 (313)
T ss_dssp ----CGGGGGCTTCCEEECCSS
T ss_pred ----ChHHhcCCCCCeEECcCC
Confidence 112224666666666655
No 103
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.46 E-value=1.2e-06 Score=55.50 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=65.8
Q ss_pred cceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccccc
Q 036006 6 LENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEKRN 85 (133)
Q Consensus 6 L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 85 (133)
.+.++++++.++.++.. ..++|++|++++. +++.+.+ ..+. .+++|+.|++++.. ++.+....
T Consensus 11 ~~~l~~s~n~l~~ip~~-------~~~~l~~L~L~~N-~i~~~~~-~~~~--~l~~L~~L~Ls~N~-l~~l~~~~----- 73 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTG-------IPTTTQVLYLYDN-QITKLEP-GVFD--RLTQLTRLDLDNNQ-LTVLPAGV----- 73 (170)
T ss_dssp TTEEECTTSCCSSCCSC-------CCTTCSEEECCSS-CCCCCCT-TTTT--TCTTCSEEECCSSC-CCCCCTTT-----
T ss_pred CCEEEeCCCCcCccCcc-------CCCCCcEEEcCCC-cCCccCh-hhhc--CcccCCEEECCCCC-cCccChhh-----
Confidence 35666666666655321 2467888888774 5666633 2344 77888888888764 66553211
Q ss_pred cccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 86 NNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 86 ~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
...+++|+.|++++. +++.++...+ ..+++|++|++.+.+
T Consensus 74 --f~~l~~L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 74 --FDKLTQLTQLSLNDN-QLKSIPRGAF--DNLKSLTHIWLLNNP 113 (170)
T ss_dssp --TTTCTTCCEEECCSS-CCCCCCTTTT--TTCTTCCEEECCSSC
T ss_pred --ccCCCCCCEEECCCC-ccCEeCHHHh--cCCCCCCEEEeCCCC
Confidence 124778888888776 5777776544 367888888887653
No 104
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.45 E-value=1.9e-07 Score=64.39 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=20.6
Q ss_pred CCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 92 PQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 92 ~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
++|+.|+++++ +++.++. + ..+++|++|++.+.+
T Consensus 274 ~~L~~L~Ls~N-~l~~~p~--~--~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 274 AKLSVLDLSYN-RLDRNPS--P--DELPQVGNLSLKGNP 307 (312)
T ss_dssp SEEEEEECCSS-CCCSCCC--T--TTSCEEEEEECTTCT
T ss_pred CCceEEECCCC-CCCCChh--H--hhCCCCCEEeccCCC
Confidence 56677777665 4555543 1 256777777776643
No 105
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.44 E-value=2.5e-06 Score=66.16 Aligned_cols=107 Identities=15% Similarity=0.135 Sum_probs=66.3
Q ss_pred CccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccc
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEK 83 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 83 (133)
++|+.|+++++.+..+....+. .+++|+.|+++++ +++.+.+ ..+. .+++|+.|+++++. +..+..
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~n-~i~~~~~-~~~~--~l~~L~~L~Ls~N~-l~~~~~----- 331 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFE----TLKDLKVLNLAYN-KINKIAD-EAFY--GLDNLQVLNLSYNL-LGELYS----- 331 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSS----SCCCCCEEEEESC-CCCEECT-TTTT--TCSSCCEEEEESCC-CSCCCS-----
T ss_pred CCccEEECCCCcccccChhhhh----cCCCCCEEECCCC-cCCCCCh-HHhc--CCCCCCEEECCCCC-CCccCH-----
Confidence 5788888888866665433322 4788888888885 5555533 2344 77888888888774 443321
Q ss_pred cccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccC
Q 036006 84 RNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 84 ~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c 129 (133)
.....+++|+.|+++++ ++..++...+ ..+++|++|.+.++
T Consensus 332 --~~~~~l~~L~~L~L~~N-~i~~~~~~~~--~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 332 --SNFYGLPKVAYIDLQKN-HIAIIQDQTF--KFLEKLQTLDLRDN 372 (844)
T ss_dssp --CSCSSCTTCCEEECCSC-CCCCCCSSCS--CSCCCCCEEEEETC
T ss_pred --HHhcCCCCCCEEECCCC-CCCccChhhh--cCCCCCCEEECCCC
Confidence 12224667777777766 4555554433 25666666666654
No 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.44 E-value=1.2e-06 Score=61.29 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=22.1
Q ss_pred cCCCccEEeecccccccccccCcccccCCCCccEEEEccCCCC
Q 036006 90 MFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCPEF 132 (133)
Q Consensus 90 ~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~~l 132 (133)
.+++|+.|++++. +++.++... +.+|++|.+.++.++
T Consensus 200 ~l~~L~~LdLs~N-~l~~lp~~~-----~~~L~~L~~l~~~~l 236 (350)
T 4ay9_X 200 GASGPVILDISRT-RIHSLPSYG-----LENLKKLRARSTYNL 236 (350)
T ss_dssp TEECCSEEECTTS-CCCCCCSSS-----CTTCCEEECTTCTTC
T ss_pred cCcccchhhcCCC-CcCccChhh-----hccchHhhhccCCCc
Confidence 3556667777665 466665543 366666666666544
No 107
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.44 E-value=1.6e-06 Score=55.15 Aligned_cols=102 Identities=19% Similarity=0.154 Sum_probs=60.6
Q ss_pred ceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccccccc
Q 036006 7 ENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEKRNN 86 (133)
Q Consensus 7 ~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~ 86 (133)
+.++++++.+..++.. ..++|++|++++. +++.+.+ ..+. .+++|+.|++++.. ++.+....
T Consensus 15 ~~l~~~~n~l~~iP~~-------~~~~L~~L~Ls~N-~l~~~~~-~~~~--~l~~L~~L~Ls~N~-l~~i~~~~------ 76 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAG-------IPTDKQRLWLNNN-QITKLEP-GVFD--HLVNLQQLYFNSNK-LTAIPTGV------ 76 (174)
T ss_dssp SEEECCSSCCSSCCSC-------CCTTCSEEECCSS-CCCCCCT-TTTT--TCTTCCEEECCSSC-CCCCCTTT------
T ss_pred cEEEeCCCCCCccCCC-------cCCCCcEEEeCCC-CccccCH-HHhc--CCcCCCEEECCCCC-CCccChhH------
Confidence 3455555555544221 1367788887774 4666533 2344 67788888887763 65553211
Q ss_pred ccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 87 NIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 87 ~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
...+++|+.|++++. +++.++...+ ..+++|++|++.+.+
T Consensus 77 -~~~l~~L~~L~L~~N-~l~~l~~~~~--~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 77 -FDKLTQLTQLDLNDN-HLKSIPRGAF--DNLKSLTHIYLYNNP 116 (174)
T ss_dssp -TTTCTTCCEEECCSS-CCCCCCTTTT--TTCTTCSEEECCSSC
T ss_pred -hCCcchhhEEECCCC-ccceeCHHHh--ccccCCCEEEeCCCC
Confidence 124677888888765 5666666543 356778888776654
No 108
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.43 E-value=1.2e-08 Score=66.10 Aligned_cols=103 Identities=21% Similarity=0.247 Sum_probs=61.3
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
+++|++|+++++.++.+. . ...+++|++|+++++ .++.++ .... .+++|+.|+++++. ++.+.
T Consensus 47 l~~L~~L~ls~n~l~~l~--~----~~~l~~L~~L~l~~n-~l~~l~--~~~~--~~~~L~~L~L~~N~-l~~l~----- 109 (198)
T 1ds9_A 47 LKACKHLALSTNNIEKIS--S----LSGMENLRILSLGRN-LIKKIE--NLDA--VADTLEELWISYNQ-IASLS----- 109 (198)
T ss_dssp TTTCSEEECSEEEESCCC--C----HHHHTTCCEEEEEEE-EECSCS--SHHH--HHHHCSEEEEEEEE-CCCHH-----
T ss_pred CCCCCEEECCCCCCcccc--c----cccCCCCCEEECCCC-Cccccc--chhh--cCCcCCEEECcCCc-CCcCC-----
Confidence 567888888888776652 1 124788888888875 455543 2333 56788888887763 44432
Q ss_pred ccccccccCCCccEEeeccccccccccc-CcccccCCCCccEEEEccC
Q 036006 83 KRNNNIVMFPQLQYLKMYDLKKLTSFCT-RDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 83 ~~~~~~~~~~~L~~L~i~~c~~L~~l~~-~~~~~~~~~~L~~L~i~~c 129 (133)
....+++|+.|+++++ +++.++. ..+ ..+++|++|.+.++
T Consensus 110 ----~~~~l~~L~~L~l~~N-~i~~~~~~~~l--~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 110 ----GIEKLVNLRVLYMSNN-KITNWGEIDKL--AALDKLEDLLLAGN 150 (198)
T ss_dssp ----HHHHHHHSSEEEESEE-ECCCHHHHHHH--TTTTTCSEEEECSC
T ss_pred ----ccccCCCCCEEECCCC-cCCchhHHHHH--hcCCCCCEEEecCC
Confidence 1123566777777665 3444432 111 25567777776655
No 109
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.43 E-value=2.2e-07 Score=68.87 Aligned_cols=13 Identities=15% Similarity=0.130 Sum_probs=8.4
Q ss_pred CCCccEEeecccc
Q 036006 91 FPQLQYLKMYDLK 103 (133)
Q Consensus 91 ~~~L~~L~i~~c~ 103 (133)
+++|+.|++++|.
T Consensus 288 ~~~L~~L~L~~~~ 300 (594)
T 2p1m_B 288 CSRLTTLNLSYAT 300 (594)
T ss_dssp HTTCCEEECTTCC
T ss_pred hCCCCEEEccCCC
Confidence 5667777766664
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.42 E-value=1.5e-07 Score=64.90 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=7.6
Q ss_pred CCccceeeeccceee
Q 036006 3 LPKLENLELRSINVE 17 (133)
Q Consensus 3 l~~L~~L~l~~~~l~ 17 (133)
+++|++|+++++.+.
T Consensus 116 ~~~L~~L~Ls~n~i~ 130 (310)
T 4glp_A 116 GLALSSLRLRNVSWA 130 (310)
T ss_dssp CBCCSSCEEESCCCS
T ss_pred CCCCCEEEeeccccc
Confidence 345555555555433
No 111
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.41 E-value=1.5e-06 Score=56.01 Aligned_cols=86 Identities=17% Similarity=0.259 Sum_probs=64.5
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccc
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQ 81 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 81 (133)
.+++|++|+++++.++.+.+..+. .+++|++|++++. +++.+++ ..+. .+++|+.|++++.. +..+...
T Consensus 52 ~l~~L~~L~Ls~N~l~~~~~~~~~----~l~~L~~L~Ls~N-~l~~~~~-~~~~--~l~~L~~L~L~~N~-l~~~~~~-- 120 (192)
T 1w8a_A 52 RLPHLVKLELKRNQLTGIEPNAFE----GASHIQELQLGEN-KIKEISN-KMFL--GLHQLKTLNLYDNQ-ISCVMPG-- 120 (192)
T ss_dssp GCTTCCEEECCSSCCCCBCTTTTT----TCTTCCEEECCSC-CCCEECS-SSST--TCTTCCEEECCSSC-CCEECTT--
T ss_pred cCCCCCEEECCCCCCCCcCHhHcC----CcccCCEEECCCC-cCCccCH-HHhc--CCCCCCEEECCCCc-CCeeCHH--
Confidence 468999999999988877444333 5899999999985 6777754 3355 88999999999885 6665321
Q ss_pred cccccccccCCCccEEeecccc
Q 036006 82 EKRNNNIVMFPQLQYLKMYDLK 103 (133)
Q Consensus 82 ~~~~~~~~~~~~L~~L~i~~c~ 103 (133)
....+++|+.|++++.+
T Consensus 121 -----~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 121 -----SFEHLNSLTSLNLASNP 137 (192)
T ss_dssp -----SSTTCTTCCEEECTTCC
T ss_pred -----HhhcCCCCCEEEeCCCC
Confidence 22358899999998764
No 112
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=3.3e-06 Score=58.61 Aligned_cols=103 Identities=18% Similarity=0.195 Sum_probs=77.4
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCccc-EEEEeCCCCceEEccccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQ-HLEIWGCPVLEEIIIVDQ 81 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~-~L~i~~c~~l~~i~~~~~ 81 (133)
+++|+++++.+++++.+....+. .+.+|+.+.+.+ +++.++. ..+. ++++|+ .+.+.+ +++.|....
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~----~~~~L~~l~l~~--ni~~I~~-~aF~--~~~~L~~~l~l~~--~l~~I~~~a- 292 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFA----QKKYLLKIKLPH--NLKTIGQ-RVFS--NCGRLAGTLELPA--SVTAIEFGA- 292 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTT----TCTTCCEEECCT--TCCEECT-TTTT--TCTTCCEEEEECT--TCCEECTTT-
T ss_pred cCCCeEEECCCCCcceecHhhhh----CCCCCCEEECCc--ccceehH-HHhh--CChhccEEEEEcc--cceEEchhh-
Confidence 57899999998888888666554 578999999976 5888743 4455 889999 999988 688874322
Q ss_pred cccccccccCCCccEEeecccccccccccCcccccCCCCccEEEE
Q 036006 82 EKRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWI 126 (133)
Q Consensus 82 ~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i 126 (133)
...+++|+.+++.+. +++.++..++ .++++|+.++.
T Consensus 293 ------F~~c~~L~~l~l~~n-~i~~I~~~aF--~~~~~L~~ly~ 328 (329)
T 3sb4_A 293 ------FMGCDNLRYVLATGD-KITTLGDELF--GNGVPSKLIYK 328 (329)
T ss_dssp ------TTTCTTEEEEEECSS-CCCEECTTTT--CTTCCCCEEEC
T ss_pred ------hhCCccCCEEEeCCC-ccCccchhhh--cCCcchhhhcc
Confidence 224788999998543 6888888776 47899998863
No 113
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=1.3e-06 Score=68.22 Aligned_cols=82 Identities=17% Similarity=0.139 Sum_probs=39.0
Q ss_pred CccEEEEecCCCcceeccCccc-cccccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeecccc-----c-c
Q 036006 33 NLIHLTLYKCRNLRCLFSSSIL-SNSIFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLK-----K-L 105 (133)
Q Consensus 33 ~L~~L~i~~c~~l~~~~~~~~~-~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~-----~-L 105 (133)
+|+.|.++++ +++.++. ... . .+++|+.|+++++. +..+ +..+..+++|+.|++++++ + .
T Consensus 729 ~L~~L~Ls~N-~L~~lp~-~l~~~--~l~~L~~L~Ls~N~-L~~l--------p~~l~~L~~L~~L~Ls~N~~ls~N~l~ 795 (876)
T 4ecn_A 729 LLTTIDLRFN-KLTSLSD-DFRAT--TLPYLSNMDVSYNC-FSSF--------PTQPLNSSQLKAFGIRHQRDAEGNRIL 795 (876)
T ss_dssp GCCEEECCSS-CCCCCCG-GGSTT--TCTTCCEEECCSSC-CSSC--------CCGGGGCTTCCEEECCCCBCTTCCBCC
T ss_pred CccEEECCCC-CCccchH-Hhhhc--cCCCcCEEEeCCCC-CCcc--------chhhhcCCCCCEEECCCCCCccccccc
Confidence 5555555554 3333321 111 2 44555555555542 3332 1122346677777776533 1 1
Q ss_pred cccccCcccccCCCCccEEEEccCC
Q 036006 106 TSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 106 ~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
..+|... ..+++|+.|.+.+|.
T Consensus 796 ~~ip~~l---~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 796 RQWPTGI---TTCPSLIQLQIGSND 817 (876)
T ss_dssp CCCCTTG---GGCSSCCEEECCSSC
T ss_pred ccChHHH---hcCCCCCEEECCCCC
Confidence 2222221 256777777777664
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.40 E-value=8.5e-07 Score=66.20 Aligned_cols=101 Identities=21% Similarity=0.246 Sum_probs=56.4
Q ss_pred ccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccccc
Q 036006 5 KLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEKR 84 (133)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~ 84 (133)
.|+.|+++++.++.++. ...+++|+.|.++++ +++.++ ..++ .+++|+.|.++++. ++.++
T Consensus 442 ~L~~L~Ls~n~l~~lp~------~~~l~~L~~L~Ls~N-~l~~lp--~~~~--~l~~L~~L~Ls~N~-l~~lp------- 502 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH------LEQLLLVTHLDLSHN-RLRALP--PALA--ALRCLEVLQASDNA-LENVD------- 502 (567)
T ss_dssp TCSEEECTTSCCSSCCC------GGGGTTCCEEECCSS-CCCCCC--GGGG--GCTTCCEEECCSSC-CCCCG-------
T ss_pred CceEEEecCCCCCCCcC------ccccccCcEeecCcc-cccccc--hhhh--cCCCCCEEECCCCC-CCCCc-------
Confidence 46677777776665521 124677777777764 455553 2344 67777777776653 44432
Q ss_pred ccccccCCCccEEeecccccccccc-cCcccccCCCCccEEEEccC
Q 036006 85 NNNIVMFPQLQYLKMYDLKKLTSFC-TRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 85 ~~~~~~~~~L~~L~i~~c~~L~~l~-~~~~~~~~~~~L~~L~i~~c 129 (133)
.+..+++|+.|+++++ +++.+. ...+ ..+++|+.|.+.++
T Consensus 503 --~l~~l~~L~~L~Ls~N-~l~~~~~p~~l--~~l~~L~~L~L~~N 543 (567)
T 1dce_A 503 --GVANLPRLQELLLCNN-RLQQSAAIQPL--VSCPRLVLLNLQGN 543 (567)
T ss_dssp --GGTTCSSCCEEECCSS-CCCSSSTTGGG--GGCTTCCEEECTTS
T ss_pred --ccCCCCCCcEEECCCC-CCCCCCCcHHH--hcCCCCCEEEecCC
Confidence 1223666666666665 455552 1112 24566666666554
No 115
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.40 E-value=1.5e-07 Score=64.93 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=17.9
Q ss_pred CCccEEeecccccccccccCcccccCCCCccEEEEccC
Q 036006 92 PQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRC 129 (133)
Q Consensus 92 ~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c 129 (133)
++|+.|+++++ +++.++.. ..+++|++|++.+.
T Consensus 272 ~~L~~L~Ls~N-~l~~~~~~----~~l~~L~~L~L~~N 304 (310)
T 4glp_A 272 AKLRVLDLSSN-RLNRAPQP----DELPEVDNLTLDGN 304 (310)
T ss_dssp SCCSCEECCSC-CCCSCCCT----TSCCCCSCEECSST
T ss_pred CCCCEEECCCC-cCCCCchh----hhCCCccEEECcCC
Confidence 55666666555 34444331 24566676666654
No 116
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.38 E-value=1.3e-06 Score=63.41 Aligned_cols=57 Identities=25% Similarity=0.286 Sum_probs=31.5
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCC
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGC 70 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c 70 (133)
.+++|++|+++++.+..+.. ...+++|++|+++++ +++.++ ... .+++|+.|+++++
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n-~l~~~~---~~~--~l~~L~~L~L~~n 319 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP------LAGLTALTNLELNEN-QLEDIS---PIS--NLKNLTYLTLYFN 319 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSS-CCSCCG---GGG--GCTTCSEEECCSS
T ss_pred cCCCCCEEECCCCccCcccc------ccCCCccCeEEcCCC-cccCch---hhc--CCCCCCEEECcCC
Confidence 35677777777776554422 113566666666664 344432 133 5566666666555
No 117
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.38 E-value=1.2e-06 Score=60.45 Aligned_cols=63 Identities=17% Similarity=0.125 Sum_probs=35.4
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCcccccccc-----CcccEEEEeCCC
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIF-----VRLQHLEIWGCP 71 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l-----~~L~~L~i~~c~ 71 (133)
.+++|++|+++++.++...+.... ...+++|++|+++++ +++..+ .... .+ ++|++|+++++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~~--~l~~~~~~~L~~L~L~~N~ 160 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLL--EATGPDLNILNLRNV-SWATRD--AWLA--ELQQWLKPGLKVLSIAQAH 160 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSS--SCCSCCCSEEEEESC-BCSSSS--SHHH--HHHTTCCTTCCEEEEESCS
T ss_pred CcCCccEEEccCCcccchhHHHHH--HhcCCCccEEEccCC-CCcchh--HHHH--HHHHhhcCCCcEEEeeCCC
Confidence 367888888888866643222110 024677777777775 344442 1222 33 667777766653
No 118
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.35 E-value=5e-08 Score=72.36 Aligned_cols=39 Identities=31% Similarity=0.470 Sum_probs=23.0
Q ss_pred cCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 90 MFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 90 ~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
.+++|+.|++++|+ ++....... ...+++|++|++.+|.
T Consensus 486 ~~~~L~~L~l~~n~-l~~~~~~~~-~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 486 GCPNLQKLEMRGCC-FSERAIAAA-VTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CCTTCCEEEEESCC-CBHHHHHHH-HHHCSSCCEEEEESCB
T ss_pred cCcccCeeeccCCC-CcHHHHHHH-HHhcCccCeeECcCCc
Confidence 46777777777776 443211111 1246778888877775
No 119
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.34 E-value=6.8e-08 Score=71.58 Aligned_cols=12 Identities=33% Similarity=0.730 Sum_probs=7.4
Q ss_pred CCccceeeeccc
Q 036006 3 LPKLENLELRSI 14 (133)
Q Consensus 3 l~~L~~L~l~~~ 14 (133)
|++|++|++.++
T Consensus 65 ~~~L~~L~L~~~ 76 (594)
T 2p1m_B 65 FPKVRSVELKGK 76 (594)
T ss_dssp CTTCCEEEEECS
T ss_pred CCCceEEeccCC
Confidence 556666666665
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.34 E-value=1.7e-06 Score=55.85 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=63.9
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccc
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQ 81 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 81 (133)
.+++|+.|+++++.++.+....+. .+++|++|++++. .++.+++ ..+. .+++|+.|.+++.. ++.+...
T Consensus 52 ~l~~L~~L~Ls~N~i~~i~~~~f~----~l~~L~~L~Ls~N-~l~~i~~-~~f~--~l~~L~~L~L~~N~-l~~~~~~-- 120 (193)
T 2wfh_A 52 NYKHLTLIDLSNNRISTLSNQSFS----NMTQLLTLILSYN-RLRCIPP-RTFD--GLKSLRLLSLHGND-ISVVPEG-- 120 (193)
T ss_dssp GCTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSS-CCCBCCT-TTTT--TCTTCCEEECCSSC-CCBCCTT--
T ss_pred cccCCCEEECCCCcCCEeCHhHcc----CCCCCCEEECCCC-ccCEeCH-HHhC--CCCCCCEEECCCCC-CCeeChh--
Confidence 368899999999988877544433 5899999999985 6777743 3455 88999999999874 6655321
Q ss_pred cccccccccCCCccEEeecccc
Q 036006 82 EKRNNNIVMFPQLQYLKMYDLK 103 (133)
Q Consensus 82 ~~~~~~~~~~~~L~~L~i~~c~ 103 (133)
....+++|+.|++.+.+
T Consensus 121 -----~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 121 -----AFNDLSALSHLAIGANP 137 (193)
T ss_dssp -----TTTTCTTCCEEECCSSC
T ss_pred -----hhhcCccccEEEeCCCC
Confidence 12247899999998753
No 121
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.33 E-value=1.6e-06 Score=55.08 Aligned_cols=85 Identities=14% Similarity=0.170 Sum_probs=63.5
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
.++|++|+++++.++.+.+..+. .+++|++|++++. +++.+++ ..+. .+++|+.|++++.. ++.+...
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~~----~l~~L~~L~Ls~N-~l~~i~~-~~~~--~l~~L~~L~L~~N~-l~~l~~~--- 99 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVFD----HLVNLQQLYFNSN-KLTAIPT-GVFD--KLTQLTQLDLNDNH-LKSIPRG--- 99 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTT----TCTTCCEEECCSS-CCCCCCT-TTTT--TCTTCCEEECCSSC-CCCCCTT---
T ss_pred CCCCcEEEeCCCCccccCHHHhc----CCcCCCEEECCCC-CCCccCh-hHhC--CcchhhEEECCCCc-cceeCHH---
Confidence 36799999999988877544333 5899999999985 7888743 3445 88999999999874 6665321
Q ss_pred ccccccccCCCccEEeecccc
Q 036006 83 KRNNNIVMFPQLQYLKMYDLK 103 (133)
Q Consensus 83 ~~~~~~~~~~~L~~L~i~~c~ 103 (133)
....+++|+.|++++.+
T Consensus 100 ----~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 100 ----AFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp ----TTTTCTTCSEEECCSSC
T ss_pred ----HhccccCCCEEEeCCCC
Confidence 12358899999998764
No 122
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.32 E-value=1.9e-06 Score=54.51 Aligned_cols=85 Identities=14% Similarity=0.127 Sum_probs=63.4
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
.++|++|+++++.++.+....+. .+++|++|++++. +++.+++ ..+. .+++|+.|++++.. ++.+...
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~----~l~~L~~L~Ls~N-~l~~l~~-~~f~--~l~~L~~L~L~~N~-l~~~~~~--- 96 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFD----RLTQLTRLDLDNN-QLTVLPA-GVFD--KLTQLTQLSLNDNQ-LKSIPRG--- 96 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTT----TCTTCSEEECCSS-CCCCCCT-TTTT--TCTTCCEEECCSSC-CCCCCTT---
T ss_pred CCCCcEEEcCCCcCCccChhhhc----CcccCCEEECCCC-CcCccCh-hhcc--CCCCCCEEECCCCc-cCEeCHH---
Confidence 46899999999988877544333 5899999999985 6887743 3445 88999999999874 6665321
Q ss_pred ccccccccCCCccEEeecccc
Q 036006 83 KRNNNIVMFPQLQYLKMYDLK 103 (133)
Q Consensus 83 ~~~~~~~~~~~L~~L~i~~c~ 103 (133)
....+++|+.|++++.+
T Consensus 97 ----~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 97 ----AFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp ----TTTTCTTCCEEECCSSC
T ss_pred ----HhcCCCCCCEEEeCCCC
Confidence 12258899999998763
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.29 E-value=2.5e-06 Score=54.05 Aligned_cols=86 Identities=16% Similarity=0.156 Sum_probs=63.1
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccc
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQ 81 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 81 (133)
.+++|++|+++++.++.+....+. .+++|++|+++++ +++.+++ ..+. .+++|+.|+++++. ++.+...
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~l~~N-~l~~~~~-~~~~--~l~~L~~L~l~~N~-l~~~~~~-- 118 (177)
T 2o6r_A 50 KLTQLTKLSLSQNQIQSLPDGVFD----KLTKLTILYLHEN-KLQSLPN-GVFD--KLTQLKELALDTNQ-LKSVPDG-- 118 (177)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTT----TCTTCCEEECCSS-CCCCCCT-TTTT--TCTTCCEEECCSSC-CSCCCTT--
T ss_pred CcccccEEECCCCcceEeChhHcc----CCCccCEEECCCC-CccccCH-HHhh--CCcccCEEECcCCc-ceEeCHH--
Confidence 368899999999988776443322 5899999999985 6777643 3445 78999999999874 6655321
Q ss_pred cccccccccCCCccEEeecccc
Q 036006 82 EKRNNNIVMFPQLQYLKMYDLK 103 (133)
Q Consensus 82 ~~~~~~~~~~~~L~~L~i~~c~ 103 (133)
....+++|+.|++++.+
T Consensus 119 -----~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 119 -----IFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp -----TTTTCTTCCEEECCSSC
T ss_pred -----HhcCCcccCEEEecCCC
Confidence 11248899999998875
No 124
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.29 E-value=3e-06 Score=61.59 Aligned_cols=33 Identities=24% Similarity=0.135 Sum_probs=17.9
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecC
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKC 42 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c 42 (133)
+++|++|+++++.++.+. . ..+++|++|+++++
T Consensus 63 l~~L~~L~Ls~n~l~~~~---~----~~l~~L~~L~Ls~N 95 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTLD---L----SQNTNLTYLACDSN 95 (457)
T ss_dssp CTTCSEEECCSSCCSCCC---C----TTCTTCSEEECCSS
T ss_pred cCCCCEEEccCCcCCeEc---c----ccCCCCCEEECcCC
Confidence 456666776666555441 1 13555555555554
No 125
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.27 E-value=6.8e-06 Score=57.25 Aligned_cols=101 Identities=23% Similarity=0.180 Sum_probs=66.4
Q ss_pred eeeccc-eeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccccccc
Q 036006 9 LELRSI-NVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEKRNNN 87 (133)
Q Consensus 9 L~l~~~-~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~ 87 (133)
++..+. +++.++. ...+.+|++|++++..+++.+++ ..+. .+++|+.|++++. +++.+... .
T Consensus 13 v~~~~~n~l~~ip~------l~~~~~L~~L~l~~~n~l~~~~~-~~~~--~l~~L~~L~l~~N-~l~~~~~~-------~ 75 (347)
T 2ifg_A 13 LRCTRDGALDSLHH------LPGAENLTELYIENQQHLQHLEL-RDLR--GLGELRNLTIVKS-GLRFVAPD-------A 75 (347)
T ss_dssp EECCSSCCCTTTTT------SCSCSCCSEEECCSCSSCCEECG-GGSC--SCCCCSEEECCSS-CCCEECTT-------G
T ss_pred EEcCCCCCCCccCC------CCCCCCeeEEEccCCCCCCCcCh-hHhc--cccCCCEEECCCC-ccceeCHH-------H
Confidence 444444 4555432 22467888998887678888743 3355 7888999988887 47776432 1
Q ss_pred cccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 88 IVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 88 ~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
...+++|+.|++++. +|+.++...+ ....|+.|.+.+.+
T Consensus 76 ~~~l~~L~~L~l~~N-~l~~~~~~~~---~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 76 FHFTPRLSRLNLSFN-ALESLSWKTV---QGLSLQELVLSGNP 114 (347)
T ss_dssp GGSCSCCCEEECCSS-CCSCCCSTTT---CSCCCCEEECCSSC
T ss_pred hcCCcCCCEEeCCCC-ccceeCHHHc---ccCCceEEEeeCCC
Confidence 225788889888876 5777776554 22338888887653
No 126
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.25 E-value=2.7e-06 Score=61.85 Aligned_cols=34 Identities=15% Similarity=-0.014 Sum_probs=20.8
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecC
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKC 42 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c 42 (133)
.+++|++|+++++.++.++ ...+++|++|+++++
T Consensus 210 ~l~~L~~L~Ls~N~l~~ip-------~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 210 QNIQLTFLDCSSNKLTEID-------VTPLTQLTYFDCSVN 243 (457)
T ss_dssp TCTTCSEEECCSSCCSCCC-------CTTCTTCSEEECCSS
T ss_pred cCCCCCEEECcCCcccccC-------ccccCCCCEEEeeCC
Confidence 3567777777777666542 113566666666654
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.24 E-value=2.3e-06 Score=63.87 Aligned_cols=105 Identities=17% Similarity=0.127 Sum_probs=75.1
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccc
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQ 81 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 81 (133)
.+++|+.|+++++.++.++.. ...+++|+.|++++. .++.++ .+. .+++|+.|.++++. ++.+..
T Consensus 461 ~l~~L~~L~Ls~N~l~~lp~~-----~~~l~~L~~L~Ls~N-~l~~lp---~l~--~l~~L~~L~Ls~N~-l~~~~~--- 525 (567)
T 1dce_A 461 QLLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDN-ALENVD---GVA--NLPRLQELLLCNNR-LQQSAA--- 525 (567)
T ss_dssp GGTTCCEEECCSSCCCCCCGG-----GGGCTTCCEEECCSS-CCCCCG---GGT--TCSSCCEEECCSSC-CCSSST---
T ss_pred ccccCcEeecCcccccccchh-----hhcCCCCCEEECCCC-CCCCCc---ccC--CCCCCcEEECCCCC-CCCCCC---
Confidence 467999999999988866432 225899999999985 677763 455 89999999999874 655420
Q ss_pred cccccccccCCCccEEeecccccccccccCccc-ccCCCCccEEE
Q 036006 82 EKRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVH-IIKFPSLRKLW 125 (133)
Q Consensus 82 ~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~-~~~~~~L~~L~ 125 (133)
+..+..+++|+.|++++++ ++..+..... ...+|+|+.|.
T Consensus 526 ---p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 526 ---IQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp ---TGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred ---cHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 2233469999999999884 7766543210 12478998874
No 128
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.16 E-value=6e-06 Score=62.30 Aligned_cols=104 Identities=18% Similarity=0.173 Sum_probs=62.3
Q ss_pred CCccceeeeccceeeeecccc------------cccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCC
Q 036006 3 LPKLENLELRSINVERIWQNQ------------VSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGC 70 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~------------~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c 70 (133)
+++|+.|+++++.++.+.... .......+++|+.|.++++ +++.++ . .+++|+.|+++++
T Consensus 180 ~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~L~~lp-----~--~l~~L~~L~Ls~N 251 (622)
T 3g06_A 180 PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGN-RLTSLP-----V--LPSELKELMVSGN 251 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS-CCSCCC-----C--CCTTCCEEECCSS
T ss_pred CCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCC-ccCcCC-----C--CCCcCcEEECCCC
Confidence 467777777777665542210 0000011245556655554 344431 2 4566777777665
Q ss_pred CCceEEccccccccccccccCCCccEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 71 PVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 71 ~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
.++.++. .+++|+.|+++++ +++.+|... ..+++|+.|.+.+++
T Consensus 252 -~L~~lp~-----------~~~~L~~L~Ls~N-~L~~lp~~l---~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 252 -RLTSLPM-----------LPSGLLSLSVYRN-QLTRLPESL---IHLSSETTVNLEGNP 295 (622)
T ss_dssp -CCSCCCC-----------CCTTCCEEECCSS-CCCSCCGGG---GGSCTTCEEECCSCC
T ss_pred -CCCcCCc-----------ccccCcEEeCCCC-CCCcCCHHH---hhccccCEEEecCCC
Confidence 3554421 3678999999887 677777543 378999999998875
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.16 E-value=8.5e-06 Score=59.15 Aligned_cols=16 Identities=31% Similarity=0.546 Sum_probs=9.4
Q ss_pred Cccceeeeccceeeee
Q 036006 4 PKLENLELRSINVERI 19 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~ 19 (133)
++|++|+++++.++.+
T Consensus 131 ~~L~~L~L~~n~l~~l 146 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKL 146 (454)
T ss_dssp TTCCEEECCSSCCSSC
T ss_pred CCCCEEECcCCCCCCC
Confidence 4566666666655544
No 130
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.13 E-value=9.3e-07 Score=65.54 Aligned_cols=86 Identities=19% Similarity=0.124 Sum_probs=48.4
Q ss_pred CCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeeccccccccccc
Q 036006 31 VQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFCT 110 (133)
Q Consensus 31 l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~ 110 (133)
+++|++|.+++|. ++......... .+++|++|++++|+ +..... ......+++|+.|++++|. ++....
T Consensus 462 ~~~L~~L~L~~n~-l~~~~~~~~~~--~~~~L~~L~l~~n~-l~~~~~------~~~~~~l~~L~~L~ls~n~-it~~~~ 530 (592)
T 3ogk_B 462 SPNVRWMLLGYVG-ESDEGLMEFSR--GCPNLQKLEMRGCC-FSERAI------AAAVTKLPSLRYLWVQGYR-ASMTGQ 530 (592)
T ss_dssp CTTCCEEEECSCC-SSHHHHHHHHT--CCTTCCEEEEESCC-CBHHHH------HHHHHHCSSCCEEEEESCB-CCTTCT
T ss_pred CccceEeeccCCC-CCHHHHHHHHh--cCcccCeeeccCCC-CcHHHH------HHHHHhcCccCeeECcCCc-CCHHHH
Confidence 4556666665543 33211111223 67888888888886 432110 0112258999999999996 665533
Q ss_pred CcccccCCCCccEEEEcc
Q 036006 111 RDVHIIKFPSLRKLWISR 128 (133)
Q Consensus 111 ~~~~~~~~~~L~~L~i~~ 128 (133)
..+ +..+|.+....+..
T Consensus 531 ~~l-~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 531 DLM-QMARPYWNIELIPS 547 (592)
T ss_dssp TGG-GGCCTTEEEEEECC
T ss_pred HHH-HHhCCCcEEEEecC
Confidence 333 23567776665543
No 131
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.10 E-value=1.6e-05 Score=59.96 Aligned_cols=51 Identities=18% Similarity=0.124 Sum_probs=29.8
Q ss_pred CccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCC
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGC 70 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c 70 (133)
++|++|++++++++.++. .+++|++|+++++ +++.++ . .+++|++|.++++
T Consensus 61 ~~L~~L~L~~N~l~~lp~--------~l~~L~~L~Ls~N-~l~~lp-----~--~l~~L~~L~Ls~N 111 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--------LPPELRTLEVSGN-QLTSLP-----V--LPPGLLELSIFSN 111 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--------CCTTCCEEEECSC-CCSCCC-----C--CCTTCCEEEECSC
T ss_pred CCCcEEEecCCCCCCCCC--------cCCCCCEEEcCCC-cCCcCC-----C--CCCCCCEEECcCC
Confidence 456667776666554421 2567777777765 355442 1 3456666666655
No 132
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.96 E-value=3.1e-05 Score=56.23 Aligned_cols=32 Identities=16% Similarity=-0.107 Sum_probs=16.5
Q ss_pred CccEEEEecCCCcceeccCccccccccCcccEEEEeCC
Q 036006 33 NLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGC 70 (133)
Q Consensus 33 ~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c 70 (133)
+|++|+++++ .++.++ ... .+++|+.|+++++
T Consensus 216 ~L~~L~l~~n-~l~~lp---~~~--~l~~L~~L~l~~N 247 (454)
T 1jl5_A 216 SLESIVAGNN-ILEELP---ELQ--NLPFLTTIYADNN 247 (454)
T ss_dssp TCCEEECCSS-CCSSCC---CCT--TCTTCCEEECCSS
T ss_pred cccEEECcCC-cCCccc---ccC--CCCCCCEEECCCC
Confidence 4555555554 333332 133 5666666666654
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.94 E-value=9.9e-06 Score=62.09 Aligned_cols=83 Identities=17% Similarity=0.107 Sum_probs=62.7
Q ss_pred CCCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccc
Q 036006 2 ALPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQ 81 (133)
Q Consensus 2 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 81 (133)
.+++|++|+|+++.++.++.. ...+++|++|+++++ +++.++ ..+. .+++|+.|.++++. +..++.
T Consensus 245 ~l~~L~~L~Ls~N~l~~lp~~-----~~~l~~L~~L~Ls~N-~l~~lp--~~~~--~l~~L~~L~L~~N~-l~~lp~--- 310 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLTELPAE-----IKNLSNLRVLDLSHN-RLTSLP--AELG--SCFQLKYFYFFDNM-VTTLPW--- 310 (727)
T ss_dssp GCCSCSCCBCTTSCCSCCCGG-----GGGGTTCCEEECTTS-CCSSCC--SSGG--GGTTCSEEECCSSC-CCCCCS---
T ss_pred CCCCCCEEEeeCCcCcccChh-----hhCCCCCCEEeCcCC-cCCccC--hhhc--CCCCCCEEECCCCC-CCccCh---
Confidence 468999999999988766422 225899999999996 577764 2345 89999999999884 665532
Q ss_pred cccccccccCCCccEEeecccc
Q 036006 82 EKRNNNIVMFPQLQYLKMYDLK 103 (133)
Q Consensus 82 ~~~~~~~~~~~~L~~L~i~~c~ 103 (133)
.+..+++|+.|++++++
T Consensus 311 -----~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 311 -----EFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp -----STTSCTTCCCEECTTSC
T ss_pred -----hhhcCCCccEEeCCCCc
Confidence 23358999999998874
No 134
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.87 E-value=5.1e-05 Score=52.80 Aligned_cols=83 Identities=20% Similarity=0.219 Sum_probs=60.4
Q ss_pred CCccceeeecc-ceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccc
Q 036006 3 LPKLENLELRS-INVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQ 81 (133)
Q Consensus 3 l~~L~~L~l~~-~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 81 (133)
+++|++|+|++ +.+..+....+. .+++|+.|++++. +++.+++ ..+. .+++|+.|++++.. +..++....
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~----~l~~L~~L~l~~N-~l~~~~~-~~~~--~l~~L~~L~l~~N~-l~~~~~~~~ 100 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLR----GLGELRNLTIVKS-GLRFVAP-DAFH--FTPRLSRLNLSFNA-LESLSWKTV 100 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSC----SCCCCSEEECCSS-CCCEECT-TGGG--SCSCCCEEECCSSC-CSCCCSTTT
T ss_pred CCCeeEEEccCCCCCCCcChhHhc----cccCCCEEECCCC-ccceeCH-HHhc--CCcCCCEEeCCCCc-cceeCHHHc
Confidence 56799999997 688888654443 5899999999995 7888854 3455 89999999999864 666542211
Q ss_pred cccccccccCCCccEEeeccc
Q 036006 82 EKRNNNIVMFPQLQYLKMYDL 102 (133)
Q Consensus 82 ~~~~~~~~~~~~L~~L~i~~c 102 (133)
..+ +|+.|++.+.
T Consensus 101 -------~~~-~L~~l~l~~N 113 (347)
T 2ifg_A 101 -------QGL-SLQELVLSGN 113 (347)
T ss_dssp -------CSC-CCCEEECCSS
T ss_pred -------ccC-CceEEEeeCC
Confidence 112 3899988765
No 135
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.86 E-value=5.4e-05 Score=56.64 Aligned_cols=11 Identities=36% Similarity=0.238 Sum_probs=5.5
Q ss_pred CCccEEEEccC
Q 036006 119 PSLRKLWISRC 129 (133)
Q Consensus 119 ~~L~~L~i~~c 129 (133)
++|+.|++.++
T Consensus 180 ~~L~~L~Ls~N 190 (571)
T 3cvr_A 180 ESLEALDVSTN 190 (571)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEECcCC
Confidence 45555555443
No 136
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.80 E-value=2.6e-06 Score=60.24 Aligned_cols=95 Identities=9% Similarity=0.025 Sum_probs=53.3
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecC--CCcceeccCcc------ccccccCcccEEEEeCCCCce
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKC--RNLRCLFSSSI------LSNSIFVRLQHLEIWGCPVLE 74 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c--~~l~~~~~~~~------~~~~~l~~L~~L~i~~c~~l~ 74 (133)
+++|++|++++|.+..............+++|++|.+++| .++....+... +. .+++|++|.++++. +.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~--~~~~L~~L~Ls~n~-l~ 107 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL--KCPKLHTVRLSDNA-FG 107 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHT--TCTTCCEEECCSCC-CC
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHh--hCCcccEEECCCCc-CC
Confidence 5788999999887665422211111124788999999887 33322111111 13 67888888888774 33
Q ss_pred EEccccccccccccccCCCccEEeecccc
Q 036006 75 EIIIVDQEKRNNNIVMFPQLQYLKMYDLK 103 (133)
Q Consensus 75 ~i~~~~~~~~~~~~~~~~~L~~L~i~~c~ 103 (133)
... ...-+..+..+++|+.|++++|.
T Consensus 108 ~~~---~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 108 PTA---QEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTT---HHHHHHHHHHCTTCCEEECCSSC
T ss_pred HHH---HHHHHHHHHhCCCCCEEECcCCC
Confidence 210 00001122357788888888773
No 137
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.79 E-value=5.2e-05 Score=56.72 Aligned_cols=32 Identities=6% Similarity=0.176 Sum_probs=24.1
Q ss_pred cEEeecccccccccccCcccccCCCCccEEEEccCC
Q 036006 95 QYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 95 ~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
+.|+++++ +++.+|.... .+++|+.|++.+++
T Consensus 210 ~~L~Ls~N-~l~~lp~~l~---~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 210 IFFRCREN-RITHIPENIL---SLDPTCTIILEDNP 241 (571)
T ss_dssp EEEECCSS-CCCCCCGGGG---GSCTTEEEECCSSS
T ss_pred eEEecCCC-cceecCHHHh---cCCCCCEEEeeCCc
Confidence 88888776 5777776543 57889999888775
No 138
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.79 E-value=2.5e-06 Score=60.36 Aligned_cols=37 Identities=22% Similarity=0.032 Sum_probs=19.3
Q ss_pred CCCccEEeecccccccc-----cccCcccccCCCCccEEEEccCC
Q 036006 91 FPQLQYLKMYDLKKLTS-----FCTRDVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 91 ~~~L~~L~i~~c~~L~~-----l~~~~~~~~~~~~L~~L~i~~c~ 130 (133)
+++|+.|+++++ +++. ++.... ..+++|++|.+.+|+
T Consensus 273 ~~~L~~L~L~~n-~i~~~g~~~l~~~l~--~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 273 NIGLQTLRLQYN-EIELDAVRTLKTVID--EKMPDLLFLELNGNR 314 (386)
T ss_dssp SCCCCEEECCSS-CCBHHHHHHHHHHHH--HHCTTCCEEECTTSB
T ss_pred CCCeEEEECcCC-cCCHHHHHHHHHHHH--hcCCCceEEEccCCc
Confidence 566666666665 2443 332211 135667777666653
No 139
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.78 E-value=9.4e-06 Score=57.45 Aligned_cols=13 Identities=38% Similarity=0.767 Sum_probs=9.6
Q ss_pred CCCccceeeeccc
Q 036006 2 ALPKLENLELRSI 14 (133)
Q Consensus 2 ~l~~L~~L~l~~~ 14 (133)
.+|+|++|.+.++
T Consensus 170 ~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 170 AMPLLNNLKIKGT 182 (362)
T ss_dssp TCTTCCEEEEECC
T ss_pred cCCCCcEEEEeCC
Confidence 3578888888766
No 140
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.69 E-value=0.00011 Score=51.91 Aligned_cols=61 Identities=23% Similarity=0.230 Sum_probs=32.7
Q ss_pred CCccceeeeccceee---eecc--cccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCC
Q 036006 3 LPKLENLELRSINVE---RIWQ--NQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGC 70 (133)
Q Consensus 3 l~~L~~L~l~~~~l~---~~~~--~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c 70 (133)
|++|+.|.+.+...+ ..|. .........+|+|+.|.++++..+. +. . . ..++|+.|.+..|
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~--~--~--~~~~L~~L~L~~~ 203 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IG--K--K--PRPNLKSLEIISG 203 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CC--S--C--BCTTCSEEEEECS
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ec--c--c--cCCCCcEEEEecC
Confidence 688999988654211 1121 1122222357899999998874332 11 1 1 3456666666533
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.63 E-value=0.00067 Score=46.91 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=19.9
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEec
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYK 41 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~ 41 (133)
+++|+++.+.+ +++.+....+. .+++|+.+.+.+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~----~~~~L~~l~l~~ 133 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFK----GCDNLKICQIRK 133 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTT----TCTTCCEEEBCC
T ss_pred cCCCcEEECCc-cccchhHHHhh----cCcccceEEcCC
Confidence 46677777766 66666544443 466677666654
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.62 E-value=2.3e-06 Score=55.26 Aligned_cols=103 Identities=18% Similarity=0.151 Sum_probs=70.1
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEcccccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQE 82 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 82 (133)
+++|++|+++++.++.++. ....+++|++|+++++ +++.++ ... .+++|+.|+++++. ++.+...
T Consensus 69 l~~L~~L~l~~n~l~~l~~-----~~~~~~~L~~L~L~~N-~l~~l~---~~~--~l~~L~~L~l~~N~-i~~~~~~--- 133 (198)
T 1ds9_A 69 MENLRILSLGRNLIKKIEN-----LDAVADTLEELWISYN-QIASLS---GIE--KLVNLRVLYMSNNK-ITNWGEI--- 133 (198)
T ss_dssp HTTCCEEEEEEEEECSCSS-----HHHHHHHCSEEEEEEE-ECCCHH---HHH--HHHHSSEEEESEEE-CCCHHHH---
T ss_pred CCCCCEEECCCCCcccccc-----hhhcCCcCCEEECcCC-cCCcCC---ccc--cCCCCCEEECCCCc-CCchhHH---
Confidence 5789999999998776532 2224689999999996 666663 345 88999999998874 4443211
Q ss_pred ccccccccCCCccEEeecccccccccccC----------cccccCCCCccEEEE
Q 036006 83 KRNNNIVMFPQLQYLKMYDLKKLTSFCTR----------DVHIIKFPSLRKLWI 126 (133)
Q Consensus 83 ~~~~~~~~~~~L~~L~i~~c~~L~~l~~~----------~~~~~~~~~L~~L~i 126 (133)
.....+++|+.|++++++ +...+.. .+ ..+++|++|+-
T Consensus 134 ---~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~--~~l~~L~~Ld~ 181 (198)
T 1ds9_A 134 ---DKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVV--KRLPNLKKLDG 181 (198)
T ss_dssp ---HHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHH--HHCSSCSEECC
T ss_pred ---HHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHH--HhCCCcEEECC
Confidence 122358999999999884 4333211 11 25788988863
No 143
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.56 E-value=7e-06 Score=59.06 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=6.3
Q ss_pred CCCccEEEEccC
Q 036006 118 FPSLRKLWISRC 129 (133)
Q Consensus 118 ~~~L~~L~i~~c 129 (133)
+++|++|++.++
T Consensus 169 ~~~L~~L~L~~n 180 (461)
T 1z7x_W 169 KPDFKELTVSNN 180 (461)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEECcCC
Confidence 355555555544
No 144
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.49 E-value=2.4e-05 Score=54.96 Aligned_cols=66 Identities=15% Similarity=0.096 Sum_probs=30.4
Q ss_pred ccceeeeccceeeeecccccccccccCC-CccEEEEecCCCcceeccCcccc-ccc-cCcccEEEEeCCC
Q 036006 5 KLENLELRSINVERIWQNQVSALSCGVQ-NLIHLTLYKCRNLRCLFSSSILS-NSI-FVRLQHLEIWGCP 71 (133)
Q Consensus 5 ~L~~L~l~~~~l~~~~~~~~~~~~~~l~-~L~~L~i~~c~~l~~~~~~~~~~-~~~-l~~L~~L~i~~c~ 71 (133)
+|++|++++|.+..............++ +|++|+++++ .++......... +.. +++|++|++++|.
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 4777777777655443211000011345 6777777665 344432111110 001 2666666666653
No 145
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.49 E-value=1e-05 Score=56.78 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=6.9
Q ss_pred ccceeeeccceee
Q 036006 5 KLENLELRSINVE 17 (133)
Q Consensus 5 ~L~~L~l~~~~l~ 17 (133)
+|++|++++|.+.
T Consensus 52 ~L~~L~Ls~N~l~ 64 (362)
T 3goz_A 52 SVTSLNLSGNSLG 64 (362)
T ss_dssp TCCEEECCSSCGG
T ss_pred ceeEEECcCCCCC
Confidence 4555555555443
No 146
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.45 E-value=6.3e-06 Score=59.29 Aligned_cols=14 Identities=36% Similarity=0.548 Sum_probs=7.4
Q ss_pred CCccceeeecccee
Q 036006 3 LPKLENLELRSINV 16 (133)
Q Consensus 3 l~~L~~L~l~~~~l 16 (133)
+++|++|+++++.+
T Consensus 112 ~~~L~~L~Ls~n~i 125 (461)
T 1z7x_W 112 LPTLQELHLSDNLL 125 (461)
T ss_dssp CTTCCEEECCSSBC
T ss_pred CCceeEEECCCCcC
Confidence 44555555555543
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.39 E-value=4.7e-05 Score=51.73 Aligned_cols=38 Identities=26% Similarity=0.284 Sum_probs=20.3
Q ss_pred cCCCccEEEEecCCCcceeccC-ccccccccCcccEEEEeCC
Q 036006 30 GVQNLIHLTLYKCRNLRCLFSS-SILSNSIFVRLQHLEIWGC 70 (133)
Q Consensus 30 ~l~~L~~L~i~~c~~l~~~~~~-~~~~~~~l~~L~~L~i~~c 70 (133)
.+++|+.|++++ .+++.+.+. .... .+++|+.|.+++.
T Consensus 168 ~l~~L~~L~Ls~-N~l~~l~~l~~~~~--~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 168 NIPELLSLNLSN-NRLYRLDDMSSIVQ--KAPNLKILNLSGN 206 (267)
T ss_dssp HCTTCCEEECTT-SCCCCCGGGTTHHH--HSTTCCEEECTTS
T ss_pred hCCCCCEEECCC-CCCCCCccchhHHh--hCCCCCEEECCCC
Confidence 366666666665 345544211 1223 5666777766554
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.25 E-value=0.0031 Score=45.09 Aligned_cols=56 Identities=14% Similarity=0.126 Sum_probs=27.2
Q ss_pred CccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCccccccccCcccEEEEeC
Q 036006 4 PKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWG 69 (133)
Q Consensus 4 ~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~ 69 (133)
++|+.+++.+++++.+....+. ..+|+.+.+. .+++.++. ..+. ++++|+.+.+.+
T Consensus 180 ~~L~~l~l~~n~l~~I~~~aF~-----~~~L~~l~lp--~~l~~I~~-~aF~--~~~~L~~l~l~~ 235 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPASTFV-----YAGIEEVLLP--VTLKEIGS-QAFL--KTSQLKTIEIPE 235 (401)
T ss_dssp TTCCEEECTTSCCSEECTTTTT-----TCCCSEEECC--TTCCEECT-TTTT--TCTTCCCEECCT
T ss_pred ccCCeeecCCCcceEechhhEe-----ecccCEEEeC--Cchheehh-hHhh--CCCCCCEEecCC
Confidence 4455555554444444333222 3455555554 24555532 2333 566677776654
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.68 E-value=4.8e-05 Score=53.91 Aligned_cols=40 Identities=10% Similarity=-0.016 Sum_probs=22.5
Q ss_pred cCCCccEEeecccccccccccCcc--cccCCCCccEEEEccCC
Q 036006 90 MFPQLQYLKMYDLKKLTSFCTRDV--HIIKFPSLRKLWISRCP 130 (133)
Q Consensus 90 ~~~~L~~L~i~~c~~L~~l~~~~~--~~~~~~~L~~L~i~~c~ 130 (133)
..++|++|+++++. +.+.....+ .....++|++|++.+|.
T Consensus 181 ~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 181 GNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp TCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred cCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 46677888877763 443221100 01245678888887763
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.67 E-value=7.1e-05 Score=53.04 Aligned_cols=40 Identities=20% Similarity=0.023 Sum_probs=25.0
Q ss_pred cCCCccEEeecccccccccccCccc--ccCCCCccEEEEccCC
Q 036006 90 MFPQLQYLKMYDLKKLTSFCTRDVH--IIKFPSLRKLWISRCP 130 (133)
Q Consensus 90 ~~~~L~~L~i~~c~~L~~l~~~~~~--~~~~~~L~~L~i~~c~ 130 (133)
..++|+.|++++| ++++.....++ ....++|++|++.+++
T Consensus 209 ~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 209 RNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp GCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred cCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 4568999999887 45543221110 0145888999888774
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.67 E-value=0.029 Score=40.04 Aligned_cols=33 Identities=6% Similarity=0.065 Sum_probs=18.4
Q ss_pred CCCccEEeecccccccccccCcccccCCCCccEEEEcc
Q 036006 91 FPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWISR 128 (133)
Q Consensus 91 ~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i~~ 128 (133)
+++|+.+.+.+ +++.+...++ ..+ +|+.+.+.+
T Consensus 322 c~~L~~l~lp~--~l~~I~~~aF--~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 322 NRKVTQLTIPA--NVTQINFSAF--NNT-GIKEVKVEG 354 (401)
T ss_dssp CCSCCEEEECT--TCCEECTTSS--SSS-CCCEEEECC
T ss_pred CCCccEEEECc--cccEEcHHhC--CCC-CCCEEEEcC
Confidence 45666666643 3555555554 255 666666644
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.27 E-value=0.048 Score=38.16 Aligned_cols=32 Identities=9% Similarity=0.061 Sum_probs=17.3
Q ss_pred CCCccEEeecccccccccccCcccccCCCCccEEEE
Q 036006 91 FPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWI 126 (133)
Q Consensus 91 ~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i 126 (133)
+.+|+.+.+.. +++.+...++ .+|.+|+.+.+
T Consensus 309 c~~L~~i~lp~--~l~~I~~~aF--~~C~~L~~i~i 340 (379)
T 4h09_A 309 CVKLSSVTLPT--ALKTIQVYAF--KNCKALSTISY 340 (379)
T ss_dssp CTTCCEEECCT--TCCEECTTTT--TTCTTCCCCCC
T ss_pred CCCCCEEEcCc--cccEEHHHHh--hCCCCCCEEEE
Confidence 45666666642 3555555443 35566665544
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.06 E-value=0.061 Score=37.96 Aligned_cols=80 Identities=14% Similarity=0.133 Sum_probs=43.4
Q ss_pred CCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeeccccccccccc
Q 036006 31 VQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFCT 110 (133)
Q Consensus 31 l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~ 110 (133)
+.+|+.+.+. .+++.++. ..+. ++.+|+.+.+.+ +++.|.... ...+.+|+.+.+.. +++.+..
T Consensus 287 c~~L~~i~l~--~~i~~I~~-~aF~--~c~~L~~i~lp~--~v~~I~~~a-------F~~C~~L~~i~ip~--sv~~I~~ 350 (394)
T 4gt6_A 287 CPALQDIEFS--SRITELPE-SVFA--GCISLKSIDIPE--GITQILDDA-------FAGCEQLERIAIPS--SVTKIPE 350 (394)
T ss_dssp CTTCCEEECC--TTCCEECT-TTTT--TCTTCCEEECCT--TCCEECTTT-------TTTCTTCCEEEECT--TCCBCCG
T ss_pred ccccccccCC--CcccccCc-eeec--CCCCcCEEEeCC--cccEehHhH-------hhCCCCCCEEEECc--ccCEEhH
Confidence 3455555543 24444422 2333 566677666643 345542211 11356777777753 3666666
Q ss_pred CcccccCCCCccEEEEcc
Q 036006 111 RDVHIIKFPSLRKLWISR 128 (133)
Q Consensus 111 ~~~~~~~~~~L~~L~i~~ 128 (133)
.++ .+|++|+.+.+.+
T Consensus 351 ~aF--~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 351 SAF--SNCTALNNIEYSG 366 (394)
T ss_dssp GGG--TTCTTCCEEEESS
T ss_pred hHh--hCCCCCCEEEECC
Confidence 654 4777888777654
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.78 E-value=0.062 Score=37.93 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=43.4
Q ss_pred cCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeecccccccccc
Q 036006 30 GVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFC 109 (133)
Q Consensus 30 ~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~ 109 (133)
.+.+|+.+.+.+ +++.++. ..+. ++.+|+.+.+.+ +++.|.... ...+.+|+.+.+.. +++.+.
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~-~aF~--~c~~L~~i~lp~--~v~~I~~~a-------F~~c~~L~~i~lp~--~l~~I~ 358 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGE-EAFE--SCTSLVSIDLPY--LVEEIGKRS-------FRGCTSLSNINFPL--SLRKIG 358 (394)
T ss_dssp TCTTCCEEEECT--TCCEECT-TTTT--TCTTCCEECCCT--TCCEECTTT-------TTTCTTCCEECCCT--TCCEEC
T ss_pred cccccccccccc--ccceech-hhhc--CCCCCCEEEeCC--cccEEhHHh-------ccCCCCCCEEEECc--cccEeh
Confidence 356777777753 5666632 2334 667777776643 355553211 11245666666643 355665
Q ss_pred cCcccccCCCCccEEEE
Q 036006 110 TRDVHIIKFPSLRKLWI 126 (133)
Q Consensus 110 ~~~~~~~~~~~L~~L~i 126 (133)
..++ .+|++|+.+.+
T Consensus 359 ~~aF--~~C~~L~~i~l 373 (394)
T 4fs7_A 359 ANAF--QGCINLKKVEL 373 (394)
T ss_dssp TTTB--TTCTTCCEEEE
T ss_pred HHHh--hCCCCCCEEEE
Confidence 5554 36666666665
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.67 E-value=0.00085 Score=42.79 Aligned_cols=122 Identities=13% Similarity=0.036 Sum_probs=62.9
Q ss_pred CCccceeeeccc-eeeeecccccccccccCCCccEEEEecCCCcceeccCcccc-ccccCcccEEEEeCCCCceEEcccc
Q 036006 3 LPKLENLELRSI-NVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILS-NSIFVRLQHLEIWGCPVLEEIIIVD 80 (133)
Q Consensus 3 l~~L~~L~l~~~-~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~-~~~l~~L~~L~i~~c~~l~~i~~~~ 80 (133)
.++|++|++++| .+..-............++|++|+++++. +.+-+...... +...++|++|+++++. +.....
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~-- 110 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGI-- 110 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHH--
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHH--
Confidence 467888888887 66643211111111135688888888863 44322111111 1145788888888874 332100
Q ss_pred ccccccccccCCCccEEee--cccccccccccCccc--ccCCCCccEEEEccCC
Q 036006 81 QEKRNNNIVMFPQLQYLKM--YDLKKLTSFCTRDVH--IIKFPSLRKLWISRCP 130 (133)
Q Consensus 81 ~~~~~~~~~~~~~L~~L~i--~~c~~L~~l~~~~~~--~~~~~~L~~L~i~~c~ 130 (133)
..-...+...++|++|++ .++ .+..-....+. ....++|++|++.++.
T Consensus 111 -~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 111 -LALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp -HHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred -HHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 000112234568999999 444 34432111110 1245788888887763
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.28 E-value=0.15 Score=35.90 Aligned_cols=76 Identities=11% Similarity=0.054 Sum_probs=41.2
Q ss_pred cCCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeecccccccccc
Q 036006 30 GVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFC 109 (133)
Q Consensus 30 ~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~ 109 (133)
.+.+|+.+.|.+ +++.++. ..+. ++.+|+.+.+.. +++.+.... ...+++|+.+.+.. +++.+.
T Consensus 318 ~c~~L~~i~lp~--~v~~I~~-~aF~--~c~~L~~i~lp~--~l~~I~~~a-------F~~C~~L~~i~lp~--~~~~~~ 381 (394)
T 4fs7_A 318 SCTSLVSIDLPY--LVEEIGK-RSFR--GCTSLSNINFPL--SLRKIGANA-------FQGCINLKKVELPK--RLEQYR 381 (394)
T ss_dssp TCTTCCEECCCT--TCCEECT-TTTT--TCTTCCEECCCT--TCCEECTTT-------BTTCTTCCEEEEEG--GGGGGG
T ss_pred CCCCCCEEEeCC--cccEEhH-Hhcc--CCCCCCEEEECc--cccEehHHH-------hhCCCCCCEEEECC--CCEEhh
Confidence 356777777653 4666632 3344 677777777754 355653211 11366777777753 244332
Q ss_pred cCcccccCCCCccEE
Q 036006 110 TRDVHIIKFPSLRKL 124 (133)
Q Consensus 110 ~~~~~~~~~~~L~~L 124 (133)
. ++ ..+++|+.+
T Consensus 382 ~-~F--~~c~~L~~I 393 (394)
T 4fs7_A 382 Y-DF--EDTTKFKWI 393 (394)
T ss_dssp G-GB--CTTCEEEEE
T ss_pred h-ee--cCCCCCcEE
Confidence 2 22 366777665
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=93.83 E-value=0.052 Score=36.76 Aligned_cols=63 Identities=17% Similarity=0.204 Sum_probs=40.0
Q ss_pred ccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeecccccccccccC-cccccCCCCccEEEEccCC
Q 036006 58 IFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFCTR-DVHIIKFPSLRKLWISRCP 130 (133)
Q Consensus 58 ~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~-~~~~~~~~~L~~L~i~~c~ 130 (133)
.+|+|+.|.+++.. +..+.... .....+++|+.|++++. +++.+... .+ ..+ +|++|.+.+.|
T Consensus 168 ~l~~L~~L~Ls~N~-l~~l~~l~-----~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l--~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNR-LYRLDDMS-----SIVQKAPNLKILNLSGN-ELKSERELDKI--KGL-KLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSC-CCCCGGGT-----THHHHSTTCCEEECTTS-CCCSGGGGGGG--TTS-CCSEEECTTST
T ss_pred hCCCCCEEECCCCC-CCCCccch-----hHHhhCCCCCEEECCCC-ccCCchhhhhc--ccC-CcceEEccCCc
Confidence 68999999998874 66543211 11225888999999775 46655321 11 123 88888887765
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.59 E-value=0.69 Score=32.54 Aligned_cols=78 Identities=12% Similarity=0.093 Sum_probs=45.8
Q ss_pred CCCccEEEEecCCCcceeccCccccccccCcccEEEEeCCCCceEEccccccccccccccCCCccEEeeccccccccccc
Q 036006 31 VQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLKKLTSFCT 110 (133)
Q Consensus 31 l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~ 110 (133)
+.+|+.+.+.+ .++.++. ..+. .+++|+.+.+.. +++.+.... ...+.+|+.+.+.+ +++.+..
T Consensus 264 c~~L~~i~lp~--~~~~I~~-~aF~--~c~~L~~i~l~~--~i~~I~~~a-------F~~c~~L~~i~lp~--~v~~I~~ 327 (394)
T 4gt6_A 264 CAYLASVKMPD--SVVSIGT-GAFM--NCPALQDIEFSS--RITELPESV-------FAGCISLKSIDIPE--GITQILD 327 (394)
T ss_dssp CSSCCEEECCT--TCCEECT-TTTT--TCTTCCEEECCT--TCCEECTTT-------TTTCTTCCEEECCT--TCCEECT
T ss_pred cccccEEeccc--ccceecC-cccc--cccccccccCCC--cccccCcee-------ecCCCCcCEEEeCC--cccEehH
Confidence 34555555532 3334321 2233 566677766642 355553211 12467899998864 5778877
Q ss_pred CcccccCCCCccEEEE
Q 036006 111 RDVHIIKFPSLRKLWI 126 (133)
Q Consensus 111 ~~~~~~~~~~L~~L~i 126 (133)
.++ .+|.+|+.+.+
T Consensus 328 ~aF--~~C~~L~~i~i 341 (394)
T 4gt6_A 328 DAF--AGCEQLERIAI 341 (394)
T ss_dssp TTT--TTCTTCCEEEE
T ss_pred hHh--hCCCCCCEEEE
Confidence 765 48899999887
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=93.15 E-value=0.007 Score=38.47 Aligned_cols=95 Identities=9% Similarity=-0.054 Sum_probs=52.7
Q ss_pred CCccceeeeccceeeeecccccccccccCCCccEEEEecCCCcceeccCcccc-ccccCcccEEEE--eCCCCceEEccc
Q 036006 3 LPKLENLELRSINVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILS-NSIFVRLQHLEI--WGCPVLEEIIIV 79 (133)
Q Consensus 3 l~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~-~~~l~~L~~L~i--~~c~~l~~i~~~ 79 (133)
.++|++|++++|.+..-............++|++|+++++ .+.+-+...... +...++|++|++ .++. +......
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~ 141 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEM 141 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHH
Confidence 4689999999996654211111111113578999999986 454432111111 125678999999 5443 4321100
Q ss_pred cccccccccccCCCccEEeeccc
Q 036006 80 DQEKRNNNIVMFPQLQYLKMYDL 102 (133)
Q Consensus 80 ~~~~~~~~~~~~~~L~~L~i~~c 102 (133)
.-...+...++|++|+++++
T Consensus 142 ---~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 142 ---EIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp ---HHHHHHHHCSSCCEEECCCS
T ss_pred ---HHHHHHHhCCCcCEEeccCC
Confidence 00112224578999999876
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.17 E-value=2.1 Score=29.77 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=18.1
Q ss_pred CCCccEEeecccccccccccCcccccCCCCccEEEE
Q 036006 91 FPQLQYLKMYDLKKLTSFCTRDVHIIKFPSLRKLWI 126 (133)
Q Consensus 91 ~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~L~~L~i 126 (133)
+++|+.+.+.+. .++.+...++ .+|.+|+.+.+
T Consensus 285 c~~L~~i~l~~~-~i~~I~~~aF--~~c~~L~~i~l 317 (379)
T 4h09_A 285 CSNLTKVVMDNS-AIETLEPRVF--MDCVKLSSVTL 317 (379)
T ss_dssp CTTCCEEEECCT-TCCEECTTTT--TTCTTCCEEEC
T ss_pred cccccccccccc-ccceehhhhh--cCCCCCCEEEc
Confidence 456666666432 3555555543 35666666655
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.61 E-value=0.21 Score=29.78 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=26.7
Q ss_pred CCccEEEEecCCCcceeccCccccccccCcccEEEEeCCC
Q 036006 32 QNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWGCP 71 (133)
Q Consensus 32 ~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~c~ 71 (133)
++|++|++++ ++++.++. ..+. .+++|+.|.+.+.+
T Consensus 31 ~~l~~L~Ls~-N~l~~l~~-~~f~--~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTG-NNLTALPP-GLLD--ALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTT-SCCSSCCT-TTGG--GCTTCCEEECCSSC
T ss_pred cCCCEEECCC-CcCCccCh-hhhh--hccccCEEEecCCC
Confidence 4789999987 57888743 4455 78899999887644
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=87.59 E-value=0.57 Score=27.86 Aligned_cols=36 Identities=17% Similarity=0.078 Sum_probs=21.9
Q ss_pred CcccEEEEeCCCCceEEccccccccccccccCCCccEEeecccc
Q 036006 60 VRLQHLEIWGCPVLEEIIIVDQEKRNNNIVMFPQLQYLKMYDLK 103 (133)
Q Consensus 60 ~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~i~~c~ 103 (133)
++|+.|++++.. ++.+.... ...+++|+.|++.+.|
T Consensus 31 ~~l~~L~Ls~N~-l~~l~~~~-------f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGNN-LTALPPGL-------LDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTSC-CSSCCTTT-------GGGCTTCCEEECCSSC
T ss_pred cCCCEEECCCCc-CCccChhh-------hhhccccCEEEecCCC
Confidence 368888887664 65553211 1246778888877653
No 163
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=55.85 E-value=14 Score=20.67 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=21.5
Q ss_pred cCCCccEEEEecCCCcceeccCccccccccCcccEEEEeC
Q 036006 30 GVQNLIHLTLYKCRNLRCLFSSSILSNSIFVRLQHLEIWG 69 (133)
Q Consensus 30 ~l~~L~~L~i~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~ 69 (133)
.+.+|+.+.|-. +++.++. ..+. ++.+|+.+.+..
T Consensus 18 ~c~~L~~i~iP~--~v~~Ig~-~aF~--~C~~L~~i~~~~ 52 (100)
T 2lz0_A 18 GNTVIREITVQP--NIGLLYD-GMFS--GCTALEKLILTG 52 (100)
T ss_dssp TCTTCCCEEECT--TSSCCCT-TSST--TCTTCCCEEECC
T ss_pred CCCCCcEEEcCC--chheEcH-HHHh--ccCCccEEEEcC
Confidence 466777777764 5666632 3344 667777776654
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=22.33 E-value=20 Score=22.87 Aligned_cols=93 Identities=9% Similarity=0.108 Sum_probs=45.7
Q ss_pred Cccceeeeccc-eeeeecccccccccccCCCccEEEEecCCCcceeccCcccc-ccccCcccEEEEeCCCCceEEccccc
Q 036006 4 PKLENLELRSI-NVERIWQNQVSALSCGVQNLIHLTLYKCRNLRCLFSSSILS-NSIFVRLQHLEIWGCPVLEEIIIVDQ 81 (133)
Q Consensus 4 ~~L~~L~l~~~-~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~-~~~l~~L~~L~i~~c~~l~~i~~~~~ 81 (133)
+.|++|++.++ .+..-.-......-..=..|+.|++++| .+.+.+...+.. +..=+.|+.|++++.. +.. .+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~----~G 114 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF-LTP----EL 114 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCH----HH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCc-CCH----HH
Confidence 56888888775 4442210000000001357889998886 344432222221 1133678888888764 221 11
Q ss_pred cc-cccccccCCCccEEeeccc
Q 036006 82 EK-RNNNIVMFPQLQYLKMYDL 102 (133)
Q Consensus 82 ~~-~~~~~~~~~~L~~L~i~~c 102 (133)
.. -.+.+..-..|+.|+++++
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHhhCCceeEEECCCC
Confidence 10 0111223456888888754
Done!