BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>036007
SSSLAVISLALTKFSFLPVIFHQPNSLNKFSQKQNLQKTKTHFSKFILFVESTSTQMLLQ
TQSLTLHFLPPLIPFKPIAKPQFIPCKQIPFRKLALKCSVSTVSCPTTHVGISNDKPFPA
EASRTIMELSSIGTLSMLTSEGCPLGVGVRFAVDDEGSPVLCVSDSCKELSVDKKSSLHV
QLDQCGSRTPQCTIQGVLDKPKDRMISKRLLSMWKRRFGEDVNEELIYVVAVERVLQMED
FAEDGIWVSSSDYRNASPDPLRHFAEKIVNEINLNNMEDVYRFCNIY

High Scoring Gene Products

Symbol, full name Information P value
PGR7
AT3G21200
protein from Arabidopsis thaliana 3.8e-69
AT3G03890 protein from Arabidopsis thaliana 5.1e-06

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  036007
        (287 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2094741 - symbol:PGR7 "AT3G21200" species:3702...   701  3.8e-69   1
TAIR|locus:2079394 - symbol:AT3G03890 species:3702 "Arabi...   130  5.1e-06   1


>TAIR|locus:2094741 [details] [associations]
            symbol:PGR7 "AT3G21200" species:3702 "Arabidopsis
            thaliana" [GO:0009507 "chloroplast" evidence=IDA] [GO:0009767
            "photosynthetic electron transport chain" evidence=IMP] [GO:0009791
            "post-embryonic development" evidence=IMP] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0009534 "chloroplast thylakoid"
            evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
            [GO:0033014 "tetrapyrrole biosynthetic process" evidence=IMP]
            [GO:0043495 "protein anchor" evidence=IDA] [GO:0070455 "positive
            regulation of heme biosynthetic process" evidence=IMP]
            InterPro:IPR012349 GO:GO:0009570 EMBL:CP002686 EMBL:AB023045
            GO:GO:0016491 GO:GO:0009791 GO:GO:0043495 GO:GO:0009534
            GO:GO:0010181 GO:GO:0009767 Gene3D:2.30.110.10 SUPFAM:SSF50475
            GO:GO:0033014 GO:GO:0070455 UniGene:At.70384 UniGene:At.8075
            EMBL:AY062654 EMBL:BT002574 IPI:IPI00538821 RefSeq:NP_566678.1
            ProteinModelPortal:Q9LU39 IntAct:Q9LU39 STRING:Q9LU39 PRIDE:Q9LU39
            EnsemblPlants:AT3G21200.1 GeneID:821673 KEGG:ath:AT3G21200
            TAIR:At3g21200 InParanoid:Q9LU39 OMA:AWEVEKS PhylomeDB:Q9LU39
            ProtClustDB:CLSN2688626 ArrayExpress:Q9LU39 Genevestigator:Q9LU39
            Uniprot:Q9LU39
        Length = 317

 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 135/213 (63%), Positives = 169/213 (79%)

Query:    76 KPIAKPQFIPCKQIPFRKLALKCSVST-VSCPTTHVGISNDKPFPAEASRTIMELSSIGT 134
             KPI + +FI  K+ P R ++L+CSVST +  P T    S  KPFPAE SR+IMELSS+GT
Sbjct:    20 KPIERREFISLKRDPSRPISLRCSVSTTLDTPAT---ASTHKPFPAEVSRSIMELSSVGT 76

Query:   135 LSMLTSEGCPLGVGVRFAVDDEGSPVLCVSDSCKELSVDKKSSLHVQLDQCGSRTPQCTI 194
             LS LT +G PLGVGVRFAVD +G+PVLC++ S   +S DK+S+LHVQL+QCG RTPQCTI
Sbjct:    77 LSTLTHDGWPLGVGVRFAVDKDGTPVLCLNRS---VSPDKRSALHVQLEQCGLRTPQCTI 133

Query:   195 QGVLDKPKDRMISKRLLSMWKRRFGEDVNEELIYVVAVERVLQMEDFAEDGIWVSSSDYR 254
             QG + +P D  + KRL + W+ +FGE+V E+ +YVVAV+RVLQMEDF EDGIWV+SSDY+
Sbjct:   134 QGSIGRPGDDTVLKRLSATWREKFGEEVKEDSLYVVAVDRVLQMEDFMEDGIWVASSDYK 193

Query:   255 NASPDPLRHFAEKIVNEINLNNMEDVYRFCNIY 287
             NASPDPLR  AE IVN+IN NNMED++RFCN+Y
Sbjct:   194 NASPDPLRDIAEDIVNQINANNMEDIFRFCNVY 226


>TAIR|locus:2079394 [details] [associations]
            symbol:AT3G03890 species:3702 "Arabidopsis thaliana"
            [GO:0004733 "pyridoxamine-phosphate oxidase activity" evidence=IEA]
            [GO:0005576 "extracellular region" evidence=ISM] [GO:0010181 "FMN
            binding" evidence=IEA] [GO:0016491 "oxidoreductase activity"
            evidence=IEA] [GO:0055114 "oxidation-reduction process"
            evidence=IEA] [GO:0009507 "chloroplast" evidence=IDA]
            InterPro:IPR011576 InterPro:IPR012349 Pfam:PF01243 GO:GO:0009507
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0010181 GO:GO:0042823
            Gene3D:2.30.110.10 SUPFAM:SSF50475 GO:GO:0004733 InterPro:IPR019595
            Pfam:PF10615 eggNOG:COG0748 EMBL:AY085802 EMBL:AK316665
            IPI:IPI00524897 RefSeq:NP_566216.1 UniGene:At.24380
            ProteinModelPortal:Q8LDU1 SMR:Q8LDU1 PaxDb:Q8LDU1 PRIDE:Q8LDU1
            EnsemblPlants:AT3G03890.1 GeneID:821082 KEGG:ath:AT3G03890
            TAIR:At3g03890 HOGENOM:HOG000265300 InParanoid:Q8LDU1 OMA:CGHMNAD
            PhylomeDB:Q8LDU1 ProtClustDB:CLSN2688049 Genevestigator:Q8LDU1
            InterPro:IPR014599 PIRSF:PIRSF035903 Uniprot:Q8LDU1
        Length = 321

 Score = 130 (50.8 bits), Expect = 5.1e-06, P = 5.1e-06
 Identities = 48/172 (27%), Positives = 77/172 (44%)

Query:   119 PAEASRTIMELSSIGTLSMLTS--EGCPLGVGVRFAVDDEGSPVLCVSDSC---KELSVD 173
             P E  RT++  S  G LS  +   EG P G  V FA D +GSP+L VS      K+L  +
Sbjct:    83 PVEEIRTVLNGSICGMLSTFSQKYEGYPSGSMVDFACDADGSPILAVSSLAVHTKDLLAN 142

Query:   174 KKSSLHVQLDQCGSRTPQCTIQG--VLDKPKDRM-ISKRLLSMWKRRFGEDVNEELIYVV 230
              K SL +  D       + T+ G  VL   KD+  +    L+   + F  D  +     +
Sbjct:   143 PKCSLLIARDPEDRTGLRITLHGDAVLVSEKDQAAVRSAYLAKHPKAFWVDFGDFSFMRI 202

Query:   231 AVERVLQMEDFAEDGIW---VSSSDYRNASPDPLRHFAEKIVNEINLNNMED 279
               + V  +   A   +     S  +Y+ A  DP+  +A+ + + +N ++ ED
Sbjct:   203 EPKVVRYVSGVATAFLGSGEFSKEEYQAAKVDPIAQYAKPVTSHMNKDHEED 254


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      287       272   0.00099  114 3  11 22  0.46    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  200 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.22u 0.10s 23.32t   Elapsed:  00:00:01
  Total cpu time:  23.22u 0.10s 23.32t   Elapsed:  00:00:01
  Start:  Mon May 20 21:43:04 2013   End:  Mon May 20 21:43:05 2013

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