BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036007
         (287 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P98073|ENTK_HUMAN Enteropeptidase OS=Homo sapiens GN=TMPRSS15 PE=1 SV=3
          Length = 1019

 Score = 34.3 bits (77), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 8/97 (8%)

Query: 196 GVLDKPKDRMISKRLLSMWKRRFGEDVNEELIYVVAVERVLQMEDFAEDGIWVSSSDYRN 255
           G+L  P D  +    LS W   +GE+V+ +L   ++ ++ ++   F ++G +  + +Y  
Sbjct: 408 GLLSLPLDPTLEPACLSFWYHMYGENVH-KLSINISNDQNMEKTVFQKEGNYGDNWNYGQ 466

Query: 256 ASPD-------PLRHFAEKIVNEINLNNMEDVYRFCN 285
            + +           F  KI+++I L+++   Y  CN
Sbjct: 467 VTLNETVKFKVAFNAFKNKILSDIALDDISLTYGICN 503


>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
           briggsae GN=rpb-1 PE=3 SV=2
          Length = 1853

 Score = 31.2 bits (69), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 2/100 (2%)

Query: 161 LCVSDSCKELSVDKKSSLHVQLDQCGSRTPQCTIQGVLDKPKDRMISKRLLSMWKRRFGE 220
           LC S S  E + +K+  L   +D   +   +        +P  R +   + + WK+   E
Sbjct: 142 LCKSKSVCEGAAEKEDGLPDDMDDPMNEGKKVPAGCGRYQPSYRRVGIDINAEWKKNVNE 201

Query: 221 DVNEELIYVVAVERVLQM-EDFAEDGIWVSSSDYRNASPD 259
           D  E  I + A ERVL++ +   ++ I V   D + A P+
Sbjct: 202 DTQERKIMLTA-ERVLEVFKQITDEDILVIGMDPQFARPE 240


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.134    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,997,601
Number of Sequences: 539616
Number of extensions: 3920423
Number of successful extensions: 8996
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 8995
Number of HSP's gapped (non-prelim): 6
length of query: 287
length of database: 191,569,459
effective HSP length: 116
effective length of query: 171
effective length of database: 128,974,003
effective search space: 22054554513
effective search space used: 22054554513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)