Query 036007
Match_columns 287
No_of_seqs 161 out of 911
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:31:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036007.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036007hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13883 Pyrid_oxidase_2: Pyri 100.0 2.7E-28 5.8E-33 212.4 12.0 138 115-254 2-169 (170)
2 KOG3374 Cellular repressor of 99.6 1.8E-15 3.8E-20 131.6 11.8 146 109-256 34-208 (210)
3 TIGR03668 Rv0121_F420 PPOX cla 99.4 3E-12 6.4E-17 108.8 14.7 116 121-236 3-138 (141)
4 TIGR03667 Rv3369 PPOX class pr 99.3 3.7E-11 8.1E-16 100.0 14.0 113 119-234 3-129 (130)
5 PF01243 Pyridox_oxidase: Pyri 99.3 2.3E-11 5E-16 92.5 9.7 83 121-205 3-89 (89)
6 PRK03467 hypothetical protein; 99.3 1.1E-10 2.5E-15 99.6 14.8 126 117-244 4-138 (144)
7 TIGR03618 Rv1155_F420 PPOX cla 99.3 1.1E-10 2.3E-15 93.8 13.0 101 134-236 1-116 (117)
8 COG0748 HugZ Putative heme iro 99.2 1.7E-12 3.6E-17 118.8 -0.3 163 120-287 6-181 (245)
9 TIGR03666 Rv2061_F420 PPOX cla 99.2 4.5E-10 9.8E-15 94.2 13.6 91 125-219 7-100 (132)
10 PF12900 Pyridox_ox_2: Pyridox 99.0 7.5E-09 1.6E-13 86.8 11.1 114 120-236 2-140 (143)
11 PRK05679 pyridoxamine 5'-phosp 98.6 1.1E-06 2.3E-11 78.3 13.6 80 123-206 20-103 (195)
12 COG3467 Predicted flavin-nucle 98.5 5.3E-06 1.2E-10 72.4 14.4 86 118-206 11-109 (166)
13 COG0748 HugZ Putative heme iro 98.4 2.8E-08 6E-13 91.3 -0.6 155 92-251 59-226 (245)
14 COG3871 Uncharacterized stress 98.4 1.6E-06 3.4E-11 74.0 9.9 119 119-243 6-134 (145)
15 PRK06733 hypothetical protein; 98.2 2.9E-05 6.3E-10 67.0 13.0 111 115-244 5-121 (151)
16 TIGR00558 pdxH pyridoxamine-ph 98.1 8.4E-05 1.8E-09 67.5 13.2 76 128-206 47-125 (217)
17 COG0259 PdxH Pyridoxamine-phos 98.0 0.00016 3.4E-09 65.1 12.4 111 125-239 41-188 (214)
18 PF10615 DUF2470: Protein of u 97.9 5.3E-06 1.1E-10 64.1 2.4 30 258-287 2-32 (83)
19 PLN03049 pyridoxine (pyridoxam 97.7 0.00045 9.7E-09 69.3 13.3 76 127-206 286-365 (462)
20 COG3787 Uncharacterized protei 97.6 0.0013 2.9E-08 55.4 12.0 128 121-250 3-139 (145)
21 PLN02918 pyridoxine (pyridoxam 97.5 0.0019 4E-08 66.1 13.2 109 128-240 369-515 (544)
22 KOG2586 Pyridoxamine-phosphate 96.8 0.0027 5.8E-08 57.3 5.6 73 130-206 56-133 (228)
23 TIGR00026 hi_GC_TIGR00026 deaz 96.6 0.031 6.8E-07 45.9 10.2 67 130-206 7-82 (113)
24 PF04299 FMN_bind_2: Putative 96.0 0.12 2.6E-06 45.4 11.4 89 117-206 9-122 (169)
25 COG5015 Uncharacterized conser 96.0 0.2 4.3E-06 42.1 11.8 112 122-239 3-122 (132)
26 PF04075 DUF385: Domain of unk 95.2 0.12 2.6E-06 43.5 8.2 65 132-206 27-100 (132)
27 COG3576 Predicted flavin-nucle 94.8 0.18 4E-06 44.5 8.5 114 121-239 32-153 (173)
28 PF12766 Pyridox_oxase_2: Pyri 94.3 0.22 4.8E-06 40.1 7.3 71 128-201 18-99 (100)
29 COG2808 PaiB Transcriptional r 87.9 8.2 0.00018 35.1 10.9 91 115-206 7-122 (209)
30 PF04289 DUF447: Protein of un 57.3 22 0.00047 31.2 5.0 50 133-184 3-55 (177)
31 PF10012 DUF2255: Uncharacteri 45.1 1.8E+02 0.0039 24.2 9.2 79 127-220 6-96 (116)
32 PF13110 DUF3966: Protein of u 24.5 30 0.00064 24.1 0.4 13 28-40 7-19 (50)
33 PF08922 DUF1905: Domain of un 23.4 3E+02 0.0064 20.9 5.8 44 119-166 18-63 (80)
No 1
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C.
Probab=99.95 E-value=2.7e-28 Score=212.39 Aligned_cols=138 Identities=26% Similarity=0.455 Sum_probs=99.6
Q ss_pred CCCCcHHHHHHHHhcCCeEEEEeeCC----CCeeeeeeeeEE----EcCCCcEEEEeCCcc---chhccCCCeEEEEeeC
Q 036007 115 DKPFPAEASRTIMELSSIGTLSMLTS----EGCPLGVGVRFA----VDDEGSPVLCVSDSC---KELSVDKKSSLHVQLD 183 (287)
Q Consensus 115 ~rPs~AE~ARtLL~~~~~gtLATls~----DG~P~~S~V~ya----~d~dG~piLlvS~~a---rNL~~dPRaSL~V~~~ 183 (287)
++...|+.||+|++..++|+|+|++. +|.|+++++.|+ .+.+|+|+|+++.++ +||++||||||+|.+.
T Consensus 2 ~~~~aA~~AR~Ll~~~~~g~LsTls~~~~~~G~Pfgs~v~~ad~~~~~~~G~p~~lls~la~ht~nl~~~~r~SL~i~~~ 81 (170)
T PF13883_consen 2 TREEAAELARTLLHQSRWGTLSTLSTQKDIDGYPFGSVVSYADGPCCDSTGRPIFLLSPLAQHTRNLKADPRVSLTISEP 81 (170)
T ss_dssp -TT-HHHHHHHHHHH-SEEEEEEE--SGGGTTSEEEEEEE-BSSSTT---S--EEEE-TTSHHHHHHHH--EEEEEEEGG
T ss_pred ChHHHHHHHHHHHhhCCEEEEEeccCCCCCCCceEEEEEEEecccCcCCCCCEEEEEeCccHHHHHHhhCCCEEEEEecC
Confidence 56788999999999999999999998 899999999999 777999999999999 9999999999999987
Q ss_pred C---------CCC--cCCeEEEEEEEEccCChHHHHHHHHHHHhhcCC-----CC---CCeeEEEEEEeEEEEeeccccc
Q 036007 184 Q---------CGS--RTPQCTIQGVLDKPKDRMISKRLLSMWKRRFGE-----DV---NEELIYVVAVERVLQMEDFAED 244 (287)
Q Consensus 184 ~---------~pl--a~~RVTL~G~a~~V~dee~~~~l~a~~~ar~g~-----~~---~df~l~RL~pe~V~~vgGFG~a 244 (287)
+ +++ +++||||.|++++|++++. +.+.+.|.++|++ +. +||.||||+|++|+||||||++
T Consensus 82 ~~~~~~~~~~dp~~~~~~RvtL~G~~~~v~~~e~-~~a~~~yl~~HP~a~~w~~~~~~hdf~~~rl~i~~v~~vgGFG~~ 160 (170)
T PF13883_consen 82 QGGDCDNSGVDPEDPACPRVTLTGRAEPVPPDEA-AAARAAYLSRHPDAKHWLPFNSPHDFFFYRLEIERVYLVGGFGGA 160 (170)
T ss_dssp GSSHHHHHT--TTSTTS-EEEEEEEEEE--TTTH-HHHHHHHHHH-GGGGGS-GG---G--EEEEEEEEEEEEE-SSSS-
T ss_pred CCCcccccCCCCCCCCCcEEEEEEEEEEcCchHH-HHHHHHHHHHCcCccccccccccCccEEEEEEEEEEEEECccCCc
Confidence 3 233 7899999999999986543 3345555555543 45 8999999999999999999999
Q ss_pred CcccChhccc
Q 036007 245 GIWVSSSDYR 254 (287)
Q Consensus 245 ~~~V~~edy~ 254 (287)
+ ||+.|||.
T Consensus 161 ~-~i~~~~Y~ 169 (170)
T PF13883_consen 161 A-WISAEEYY 169 (170)
T ss_dssp E-EE-HHHHH
T ss_pred e-EeCHHHhc
Confidence 7 99999996
No 2
>KOG3374 consensus Cellular repressor of transcription [Transcription]
Probab=99.64 E-value=1.8e-15 Score=131.64 Aligned_cols=146 Identities=17% Similarity=0.239 Sum_probs=121.7
Q ss_pred CCCCCCCCCCcHHHHHHHHhcCCeEEEEeeCC----CCeeeeeeeeEEEc----CCCcEEEEeCCcc---chhccCCCeE
Q 036007 109 HVGISNDKPFPAEASRTIMELSSIGTLSMLTS----EGCPLGVGVRFAVD----DEGSPVLCVSDSC---KELSVDKKSS 177 (287)
Q Consensus 109 ~~~~~~~rPs~AE~ARtLL~~~~~gtLATls~----DG~P~~S~V~ya~d----~dG~piLlvS~~a---rNL~~dPRaS 177 (287)
-+.+.+.|...|..||.++++++||+|+|++. .|+||+.++.+... +.|+|++|++++. +|++.|++++
T Consensus 34 r~~~~p~r~d~A~iAR~lvh~~~Wgal~TlSt~e~vkG~Pf~nViS~sDg~p~~gtG~pyFyLt~Ld~t~~n~qkd~~at 113 (210)
T KOG3374|consen 34 REYKRPQRLDHAKIARDLVHRANWGALGTLSTNERVKGYPFVNVISISDGDPNNGTGRPYFYLTDLDFTGPNWQKDNKAT 113 (210)
T ss_pred hcCCCCchhhHHHHHHHHhhhcccceeeeeeecccccCCccceEEEccCCCCcCCCCceEEEeccCCCCCcccccCCcee
Confidence 34556788899999999999999999999984 69999999987653 2699999999998 9999999999
Q ss_pred EEEeeCC---------CCCc--CCeEEEEEEEEccCChHH--HHHHHHHHHhhcCC-----CCCCeeEEEEEEeEEEEee
Q 036007 178 LHVQLDQ---------CGSR--TPQCTIQGVLDKPKDRMI--SKRLLSMWKRRFGE-----DVNEELIYVVAVERVLQME 239 (287)
Q Consensus 178 L~V~~~~---------~pla--~~RVTL~G~a~~V~dee~--~~~l~a~~~ar~g~-----~~~df~l~RL~pe~V~~vg 239 (287)
|++.+.+ +|+. +.+.+|+|++.++++.+. ...+++++ .||++ ..|+|.|-+|++..|+..+
T Consensus 114 L~~s~~qt~~Ck~~g~DPm~PtC~~~mlsG~v~k~~~~~~~~~~~~~alf-~rHPem~~w~~~hn~~~~~l~isni~vld 192 (210)
T KOG3374|consen 114 LLFSDEQTLRCKEGGKDPMEPTCARSMLSGQVKKMDPSDKSYQPSLDALF-RRHPEMINWVKAHNFYLCELEISNIFVLD 192 (210)
T ss_pred EEeeccccchhhcCCCCCCCchhhhheecceEEEeCCcchhhhhhhhhHh-hcCHhHcCCccccceEEEEEeeeeEEEEE
Confidence 9999874 4554 889999999999987433 23334444 46665 2478999999999999999
Q ss_pred cccccCcccChhccccC
Q 036007 240 DFAEDGIWVSSSDYRNA 256 (287)
Q Consensus 240 GFG~a~~~V~~edy~~A 256 (287)
-||+.. .|+++||.+.
T Consensus 193 ~~ggp~-~vs~~~yy~v 208 (210)
T KOG3374|consen 193 FYGGPH-KVSASDYYAV 208 (210)
T ss_pred ecCCCc-ccCHHHhccc
Confidence 999996 8999999874
No 3
>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.45 E-value=3e-12 Score=108.80 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=81.8
Q ss_pred HHHHHHHhcCCeEEEEeeCCCCeeeeeeeeEEEc------CCCcEEEEe-----CCc--c--chhccCCCeEEEEeeCCC
Q 036007 121 EASRTIMELSSIGTLSMLTSEGCPLGVGVRFAVD------DEGSPVLCV-----SDS--C--KELSVDKKSSLHVQLDQC 185 (287)
Q Consensus 121 E~ARtLL~~~~~gtLATls~DG~P~~S~V~ya~d------~dG~piLlv-----S~~--a--rNL~~dPRaSL~V~~~~~ 185 (287)
+.++++|+....|+|||+++||.|+.++|||+.+ ++|.+++.. +.. . +||++|||++++|...++
T Consensus 3 ~e~~~~L~~~~~~~LaTv~~dG~P~vvPv~f~~d~~~~~~~~~~i~~~~~~~~~t~~~~~K~~ni~~nPrVs~~v~~~~~ 82 (141)
T TIGR03668 3 FEARTRFAQARVARLATVSPDGEPHLVPVVFAVGAGAVAAGDAVIYTAVDAKPKTTPRLRRLRNIEENPRVSLLVDRYDD 82 (141)
T ss_pred HHHHHHHccCCEEEEEEECCCCCeEEEeEEEEEccccccCCCCEEEEEecCCCCcccccHHHHHHhhCCCEEEEEecCCC
Confidence 6789999999999999999999999999999998 245543332 111 1 899999999999865433
Q ss_pred CCc-CCeEEEEEEEEccCChH-HHHHHHHHHHhhcC---CCCCCeeEEEEEEeEEE
Q 036007 186 GSR-TPQCTIQGVLDKPKDRM-ISKRLLSMWKRRFG---EDVNEELIYVVAVERVL 236 (287)
Q Consensus 186 pla-~~RVTL~G~a~~V~dee-~~~~l~a~~~ar~g---~~~~df~l~RL~pe~V~ 236 (287)
... ...+.+.|+++.+++++ ..+.+.....++|. ....+..+++|+|+++.
T Consensus 83 ~~~~~~~v~v~G~a~~~~d~~~e~~~~~~~l~~kY~~~~~~~~~~~vi~i~~~r~~ 138 (141)
T TIGR03668 83 DWTRLWWVRADGRAEILRPGEEEHAAAVRLLRAKYHQYQAVPLEGPVIAIRVERWA 138 (141)
T ss_pred CccceEEEEEEEEEEEecCCchhhHHHHHHHHHHhHhhhhcCCCCcEEEEEEEEEe
Confidence 322 23489999999998765 32222222222322 22334889999999764
No 4
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.33 E-value=3.7e-11 Score=100.02 Aligned_cols=113 Identities=18% Similarity=0.203 Sum_probs=83.8
Q ss_pred cHHHHHHHHhcCCeEEEEeeCCCCeeeeeeeeEEEcCCCcEEEEeCCcc---chhccCCCeEEEEeeCCCCCcCCeEEEE
Q 036007 119 PAEASRTIMELSSIGTLSMLTSEGCPLGVGVRFAVDDEGSPVLCVSDSC---KELSVDKKSSLHVQLDQCGSRTPQCTIQ 195 (287)
Q Consensus 119 ~AE~ARtLL~~~~~gtLATls~DG~P~~S~V~ya~d~dG~piLlvS~~a---rNL~~dPRaSL~V~~~~~pla~~RVTL~ 195 (287)
..+.++.+|+..+.+.|+|+++||.|+..+|+|..+ +|..+++-...+ +||++||+++|++.+++... ..+.|.
T Consensus 3 ~~~~~~~~L~~~~~~~LaT~~~dG~P~~~P~~~~~~-d~~l~~~t~~~s~K~~~l~~np~Vsl~~~~~~~~~--~~v~v~ 79 (130)
T TIGR03667 3 FTAKVARRLREESIVWLTTVRRSGQPQPVPVWFLWD-GTEFLIYSRPQAAKLRNIRRNPRVSLHLNSDGRGG--DVVVFT 79 (130)
T ss_pred CCHHHHHHhcCCCeEEEEEECCCCceEEEEEEEEEE-CCEEEEEeCCcCHHHHHHhhCCcEEEEEEcCCCCc--eEEEEE
Confidence 346789999999999999999999999999999887 677655544444 99999999999997754332 368999
Q ss_pred EEEEccCChHHHHHHHHHHHhh------cCCC----CCC-eeEEEEEEeE
Q 036007 196 GVLDKPKDRMISKRLLSMWKRR------FGED----VNE-ELIYVVAVER 234 (287)
Q Consensus 196 G~a~~V~dee~~~~l~a~~~ar------~g~~----~~d-f~l~RL~pe~ 234 (287)
|+++.+++.+..+...++|.+. .|.+ ..+ ..++||+|++
T Consensus 80 G~a~i~~d~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (130)
T TIGR03667 80 GTAEVVADAPPAREIPAYLAKYREDAARIGMTPERFAADYSVPLRVTPER 129 (130)
T ss_pred EEEEEeCCchhHHHHHHHHHHhhHHHhcCCCChhHhhhccceeEEEeccc
Confidence 9999998765434444455421 2211 122 3599999976
No 5
>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1.4.3.5 from EC) is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This reaction serves as the terminal step in the de novo biosynthesis of PLP in Escherichia coli and as a part of the salvage pathway of this coenzyme in both E. coli and mammalian cells [, ]. The binding sites for FMN and for substrate have been highly conserved throughout evolution. This entry represents the FMN-binding domain present in pyridoxamine 5'-phosphate oxidases, as well as in a number of proteins that have not been demonstrated to have enzymatic activity. The FMN-binding domain has a structure consisting of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. PNPOx has a different dimerisation mode than that found in flavin reductases, which also carry an FMN-binding domain with a similar topology. ; GO: 0004733 pyridoxamine-phosphate oxidase activity, 0010181 FMN binding, 0055114 oxidation-reduction process; PDB: 2IG6_A 1CI0_A 2HQ7_B 2HTD_B 3EC6_A 1WV4_B 1DNL_A 1G76_A 1G79_A 1G77_A ....
Probab=99.29 E-value=2.3e-11 Score=92.49 Aligned_cols=83 Identities=19% Similarity=0.261 Sum_probs=70.1
Q ss_pred HHHHHHHhcCCeEEEEeeCCCCeeeeeeeeEEEcCCC-cEEEEeCCcc---chhccCCCeEEEEeeCCCCCcCCeEEEEE
Q 036007 121 EASRTIMELSSIGTLSMLTSEGCPLGVGVRFAVDDEG-SPVLCVSDSC---KELSVDKKSSLHVQLDQCGSRTPQCTIQG 196 (287)
Q Consensus 121 E~ARtLL~~~~~gtLATls~DG~P~~S~V~ya~d~dG-~piLlvS~~a---rNL~~dPRaSL~V~~~~~pla~~RVTL~G 196 (287)
+.+++++++.+.++|||++.||.|++++++|..+.++ .+++.....+ +||++||+++|++.+++ .....+.+.|
T Consensus 3 ~~~~~~l~~~~~~~laTv~~dG~P~~~~v~~~~~~~~~~i~~~t~~~~~k~~nl~~np~v~l~~~~~~--~~~~~v~~~G 80 (89)
T PF01243_consen 3 EEIREFLEESKYCVLATVDEDGRPHASPVWFVYDDDDNTIYFATNPGSRKVRNLRRNPRVSLLFCDPE--GTRRGVRVSG 80 (89)
T ss_dssp HHHHHHHHSTSEEEEEEEETTSEEEEEEEEEEEECTTTEEEEEEETTSHHHHHHHHSTEEEEEEEETT--TTTEEEEEEE
T ss_pred HHHHHHhcCCCEEEEEEECCCCCEEEEEEeeecCCceeEEEEeecCCCCchhhCccCCeEEEEEEEcC--cCceEEEEEE
Confidence 6789999999999999999999999999999987544 3555444444 99999999999999987 3345899999
Q ss_pred EEEccCChH
Q 036007 197 VLDKPKDRM 205 (287)
Q Consensus 197 ~a~~V~dee 205 (287)
+++.++++|
T Consensus 81 ~a~~~~d~E 89 (89)
T PF01243_consen 81 TAEILTDEE 89 (89)
T ss_dssp EEEEESHHH
T ss_pred EEEEEcCCC
Confidence 999998764
No 6
>PRK03467 hypothetical protein; Provisional
Probab=99.29 E-value=1.1e-10 Score=99.57 Aligned_cols=126 Identities=10% Similarity=0.093 Sum_probs=103.4
Q ss_pred CCcHHHHHHHHhcCCeEEEEeeCCCCeeeeeeeeEEEcCCCcEEEEeCCcc----chhccCCCeEEEEeeCCC-CCcCCe
Q 036007 117 PFPAEASRTIMELSSIGTLSMLTSEGCPLGVGVRFAVDDEGSPVLCVSDSC----KELSVDKKSSLHVQLDQC-GSRTPQ 191 (287)
Q Consensus 117 Ps~AE~ARtLL~~~~~gtLATls~DG~P~~S~V~ya~d~dG~piLlvS~~a----rNL~~dPRaSL~V~~~~~-pla~~R 191 (287)
|..-+.+.++|+..+..+|+|.+ +|.|++..+.|+.|+++--++++|... +++.+||+|+.+|..++. ......
T Consensus 4 ~~~~~~I~~fl~~~hvltLa~~~-~~~~w~A~cFY~fd~~~~~l~~~S~~~TrH~~~~~~np~VAgTI~~~~~~v~~I~G 82 (144)
T PRK03467 4 MDTLTAISRWLAKQHVVTLCVGQ-EGELWCANCFYVFDAQKVAFYLLTEEKTRHGQMMGPNAQVAGTVNGQPKTVALIRG 82 (144)
T ss_pred hhHHHHHHHHHHhCcEEEEEEEc-CCCcceEEEEEEEcCCCeEEEEEcCCCCHHHHHHhhCCCEEEEEcCCCcchhhceE
Confidence 35566899999999999999965 577888899999998777777777766 899999999999998864 444667
Q ss_pred EEEEEEEEccCChHHHHHHHHHHHhhcCC-CCCCeeEEEEEEeEEEEee---ccccc
Q 036007 192 CTIQGVLDKPKDRMISKRLLSMWKRRFGE-DVNEELIYVVAVERVLQME---DFAED 244 (287)
Q Consensus 192 VTL~G~a~~V~dee~~~~l~a~~~ar~g~-~~~df~l~RL~pe~V~~vg---GFG~a 244 (287)
|.+.|.+..+++++. +.+++.|-+||+. ......+|+|+++++.++| |||+-
T Consensus 83 vQ~~G~~~~l~~~e~-~~Ar~~Y~~rFP~A~~~~~~iw~l~l~~iK~tdN~LGFgkK 138 (144)
T PRK03467 83 VQFKGEIRRLEGEES-DAARKRYNRRFPVARALSAPVWELRLDEIKMTDNTLGFGKK 138 (144)
T ss_pred EEEEEEEEecChhHH-HHHHHHHHHhCcchhccCCceEEEEEEEEEEeccccccccc
Confidence 999999999987654 5567788888874 2335679999999999999 99974
No 7
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes.
Probab=99.27 E-value=1.1e-10 Score=93.80 Aligned_cols=101 Identities=21% Similarity=0.229 Sum_probs=72.9
Q ss_pred EEEeeCCCCeeeeeeeeEEEcCCCc-EEEEeCCcc---chhccCCCeEEEEeeCCCCCcCCeEEEEEEEEccCChHH-HH
Q 036007 134 TLSMLTSEGCPLGVGVRFAVDDEGS-PVLCVSDSC---KELSVDKKSSLHVQLDQCGSRTPQCTIQGVLDKPKDRMI-SK 208 (287)
Q Consensus 134 tLATls~DG~P~~S~V~ya~d~dG~-piLlvS~~a---rNL~~dPRaSL~V~~~~~pla~~RVTL~G~a~~V~dee~-~~ 208 (287)
+|+|++.+|.|+.++++|+.+.+|. ++|+.+..+ +||++||+|+|++.++.... .+++++|+++.+++++. .+
T Consensus 1 ~LaTv~~~G~P~~~pv~~~~~~~~~~l~f~t~~~s~k~~~l~~np~v~l~~~~~~~~~--~~v~i~G~a~~v~d~~~~~~ 78 (117)
T TIGR03618 1 VLATIRADGRPQLSPVWFGVDPDGDILVVSTTAGRAKARNLRRDPRVSLSVLDPDFPY--RYVEVEGTAELVEDPDPVRD 78 (117)
T ss_pred CEEEECCCCCEEEEEEEEEEcCCCCEEEEEecCCcHhhHhhhhCCeEEEEEECCCCCc--cEEEEEEEEEEecCCcccHH
Confidence 5899999999999999999854444 555555544 99999999999999876432 47999999999987543 23
Q ss_pred HHHHHHHhhcC--------C--CCCCeeEEEEEEeEEE
Q 036007 209 RLLSMWKRRFG--------E--DVNEELIYVVAVERVL 236 (287)
Q Consensus 209 ~l~a~~~ar~g--------~--~~~df~l~RL~pe~V~ 236 (287)
.+..++.+..+ . +-++..++||+|++++
T Consensus 79 ~~~~l~~~y~~~~~~~~~~~~~~~~~~~~l~i~p~~~~ 116 (117)
T TIGR03618 79 LVDRLAERYRGAAGEDEYRRPMVDPRRVVVRVTPTRVY 116 (117)
T ss_pred HHHHHHHHHcccccchhcccccCCCCEEEEEEEEEEec
Confidence 33333332211 1 2246799999999885
No 8
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=99.21 E-value=1.7e-12 Score=118.85 Aligned_cols=163 Identities=15% Similarity=0.194 Sum_probs=124.8
Q ss_pred HHHHHHHHhcCCeEEEEeeCC-CCeeeeeeeeEEEcCCCcEEEEeCCcc--chhccCCCeEEEEeeCC--CCCcCCeEEE
Q 036007 120 AEASRTIMELSSIGTLSMLTS-EGCPLGVGVRFAVDDEGSPVLCVSDSC--KELSVDKKSSLHVQLDQ--CGSRTPQCTI 194 (287)
Q Consensus 120 AE~ARtLL~~~~~gtLATls~-DG~P~~S~V~ya~d~dG~piLlvS~~a--rNL~~dPRaSL~V~~~~--~pla~~RVTL 194 (287)
...||.+++..+.|.|+|+.+ +|.|++|.+.+++|.+|+|.++++... ..+..|+|+|++.-+.+ +++..+|+++
T Consensus 6 ~~na~~~l~~~~~~~l~~~~~~~g~p~~sv~~~gid~~g~p~~~~~~~~~h~~~~~d~r~sil~~~~g~~d~~~~~Rl~~ 85 (245)
T COG0748 6 HMNARHLLRSARLAALAGLEPVTGVPFVSVVPVGIDIDGNPLILLSRLFPHTADEADPRCSILLGEPGKGDELALPRLTL 85 (245)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCceeeeccceeccCCCcceeEeeeccccccccChhhhheecCcCcCChhhccchhH
Confidence 456899999999999999875 899999999999999999999999988 34999999999988874 6778899999
Q ss_pred EEEEEccCChHH-HHHHHHHHHhh-----cCCCCCCeeEEEEEEeEEEEeecccc-cCcccChhccccCCCCcchhh-hH
Q 036007 195 QGVLDKPKDRMI-SKRLLSMWKRR-----FGEDVNEELIYVVAVERVLQMEDFAE-DGIWVSSSDYRNASPDPLRHF-AE 266 (287)
Q Consensus 195 ~G~a~~V~dee~-~~~l~a~~~ar-----~g~~~~df~l~RL~pe~V~~vgGFG~-a~~~V~~edy~~A~PDPL~~~-e~ 266 (287)
.+.+.+++.+.. ...++..+..+ +..+.+||.+|+.++.+....+|++. .. .+-.+| ...+...+ +.
T Consensus 86 e~~afr~~~~sv~lat~~~~g~~~~syAp~~~~~~d~~iyis~~arh~~N~~~~p~vs-~m~ied----ea~a~s~~~r~ 160 (245)
T COG0748 86 EIEAFRLEFDSVALATLRERGLPRASYAPLYVDDGDYYIYISEIARHARNLGFNPKVS-VMFIED----EAKAKSAFARK 160 (245)
T ss_pred HHHHHHhccchHHHhhhhhcCCcCCCcCceEecCCceEEEEehHHHHhhccCcCCchh-hheecC----chhhhhHHHHH
Confidence 999999987654 12222222111 22345789999999988887777776 11 122222 23344444 56
Q ss_pred HHHHHHhhcCHHHHHHHHhhC
Q 036007 267 KIVNEINLNNMEDVYRFCNIY 287 (287)
Q Consensus 267 ~ll~HLN~dH~e~v~~~~~~y 287 (287)
.++.|||++|.|.+..++++|
T Consensus 161 rl~~hmnAd~~eai~~yaqv~ 181 (245)
T COG0748 161 RLREHMNADHAEAIAEYAQVL 181 (245)
T ss_pred HHHHHhhhHHHHHHHHHHHHH
Confidence 999999999999999998875
No 9
>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.20 E-value=4.5e-10 Score=94.20 Aligned_cols=91 Identities=14% Similarity=0.190 Sum_probs=68.9
Q ss_pred HHHhcCCeEEEEeeCCCCeeeeeeeeEEEcCCCcEEEEeCCcc---chhccCCCeEEEEeeCCCCCcCCeEEEEEEEEcc
Q 036007 125 TIMELSSIGTLSMLTSEGCPLGVGVRFAVDDEGSPVLCVSDSC---KELSVDKKSSLHVQLDQCGSRTPQCTIQGVLDKP 201 (287)
Q Consensus 125 tLL~~~~~gtLATls~DG~P~~S~V~ya~d~dG~piLlvS~~a---rNL~~dPRaSL~V~~~~~pla~~RVTL~G~a~~V 201 (287)
..|++.+.++|+|++.||.|+.++|||+.+ +|..+|+.+... +||++||+|++++.+.... ...+.+.|+++.+
T Consensus 7 ~~L~~~~~~~LaT~~~dG~P~~~Pv~~~~d-~g~l~f~t~~~~~K~~nl~~np~Vsl~v~~~~~~--~~~v~v~G~A~~v 83 (132)
T TIGR03666 7 ADLARARYALLTTFRKDGTPVPTPVWAAVD-GDKLLVRTKEDSWKVKRIRNNPRVTLAPCDRRGR--PTGPVVPGRARIL 83 (132)
T ss_pred HHhccCcEEEEEEECCCCcEEEEEEEEEEE-CCEEEEEECCcCHHHHHHHhCCCEEEEEECCCCC--EeEEEEEEEEEEE
Confidence 457899999999999999999999999997 577665555544 9999999999998765431 2359999999999
Q ss_pred CChHHHHHHHHHHHhhcC
Q 036007 202 KDRMISKRLLSMWKRRFG 219 (287)
Q Consensus 202 ~dee~~~~l~a~~~ar~g 219 (287)
++++..+ +.+...++|+
T Consensus 84 ~~~e~~~-~~~~l~~kY~ 100 (132)
T TIGR03666 84 DGAETAR-ARDLLARRYG 100 (132)
T ss_pred cchhHHH-HHHHHHHHcC
Confidence 6554433 3333344554
No 10
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several uncharacterised proteins, some annotated as pyridoxamine 5'-phosphate oxidase-related.; PDB: 3U5W_A 3U0I_A 2X1K_A 1W3Q_A 1W3P_A 1W3O_A 2VPA_A 2X1J_A 1W3R_A 3FKH_A ....
Probab=98.96 E-value=7.5e-09 Score=86.83 Aligned_cols=114 Identities=17% Similarity=0.241 Sum_probs=83.1
Q ss_pred HHHHHHHHhcCCeEEEEeeCCCCeeeeeeeeEEEcCCCcEEEEeCCcc---chhccCCCeEEEEeeCC------CC----
Q 036007 120 AEASRTIMELSSIGTLSMLTSEGCPLGVGVRFAVDDEGSPVLCVSDSC---KELSVDKKSSLHVQLDQ------CG---- 186 (287)
Q Consensus 120 AE~ARtLL~~~~~gtLATls~DG~P~~S~V~ya~d~dG~piLlvS~~a---rNL~~dPRaSL~V~~~~------~p---- 186 (287)
.+++.++|+++.+|+||+.+ +|.|+..+++|+.+ +|.+|+.-+... +.++.+| +++++...+ .+
T Consensus 2 ~~e~~~iL~~~~~g~la~~~-~~~Py~vP~~f~~~-~~~ly~h~~~~g~k~~~l~~~p-v~~~~~~~~~~~~~~~~~~~~ 78 (143)
T PF12900_consen 2 REEIWEILDRAPVGRLAFVD-DGYPYIVPVNFVYD-GGSLYFHGARGGKKIELLRNNP-VCFTVDEVDELVPAESACSFS 78 (143)
T ss_dssp HHHHHHHHHH-SEEEEEEEE-TTEEEEEEEEEEEE-TTEEEEEECSHSHHHHHHHHEE-EEEEEEEEEEEEETSCGGGEE
T ss_pred HHHHHHHHhhCCEEEEEEEe-CCEEEEEEEEEEEE-CCEEEEEECCcchHHHHhccCC-eEEEEEecCcEeecccCCcCc
Confidence 47899999999999999987 89999999999999 677666655544 6777788 999987732 11
Q ss_pred CcCCeEEEEEEEEccCChHHHHHHHHHHHhhc-CCCC-----------CCeeEEEEEEeEEE
Q 036007 187 SRTPQCTIQGVLDKPKDRMISKRLLSMWKRRF-GEDV-----------NEELIYVVAVERVL 236 (287)
Q Consensus 187 la~~RVTL~G~a~~V~dee~~~~l~a~~~ar~-g~~~-----------~df~l~RL~pe~V~ 236 (287)
.....|.+.|+++.|+++++.+++......++ +..+ ....+|||+|+++.
T Consensus 79 ~~y~SVi~~G~~~~v~d~~ek~~al~~l~~~~~p~~~~~~~~~~~~~~~~~~v~ri~i~~~s 140 (143)
T PF12900_consen 79 MNYRSVIVFGRAEEVEDEEEKAEALRALLEKYAPGRWDEIRPFADKELKRTAVYRIDIEELS 140 (143)
T ss_dssp EEEEEEEEEEEEEEEHSHHHHHHHHHHHHHHHSTTTCCCSC---HHHHHTEEEEEEEEEEEE
T ss_pred ceEEEEEEEEEEEEeCCHHHHHHHHHHHHHhccCCCcccccccchhhhcCeEEEEEEeEEEE
Confidence 12457999999999988766444444333343 2111 13699999999875
No 11
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional
Probab=98.60 E-value=1.1e-06 Score=78.34 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=61.7
Q ss_pred HHHHHhcCCeEEEEeeCCCCeeeeeeeeEE-EcCCCcEEEEeCCcc---chhccCCCeEEEEeeCCCCCcCCeEEEEEEE
Q 036007 123 SRTIMELSSIGTLSMLTSEGCPLGVGVRFA-VDDEGSPVLCVSDSC---KELSVDKKSSLHVQLDQCGSRTPQCTIQGVL 198 (287)
Q Consensus 123 ARtLL~~~~~gtLATls~DG~P~~S~V~ya-~d~dG~piLlvS~~a---rNL~~dPRaSL~V~~~~~pla~~RVTL~G~a 198 (287)
.+.-+...+.++|||++.||.|.+..|++. .+++| .+|+-...+ ++|++||+|+|++..+.. ...|.|.|.+
T Consensus 20 ~~~~~~~~~~~~lATv~~dG~P~~R~V~lr~~~~~~-l~f~T~~~S~K~~~l~~np~val~~~~~~~---~~qvrv~G~a 95 (195)
T PRK05679 20 VKAELNDPNAMTLATVDEDGRPSQRIVLLKGFDERG-FVFYTNYESRKGRQLAANPKAALLFPWKSL---ERQVRVEGRV 95 (195)
T ss_pred HhcCCCCCceEEEEeeCCCCCEEEEEEEEEEECCCe-EEEEeCCCCHHHHHHhhCCcEEEEEecCCC---CEEEEEEEEE
Confidence 334456678899999999999999999984 67555 555444444 999999999999987632 2379999999
Q ss_pred EccCChHH
Q 036007 199 DKPKDRMI 206 (287)
Q Consensus 199 ~~V~dee~ 206 (287)
+.+++++.
T Consensus 96 ~~~~~~~~ 103 (195)
T PRK05679 96 EKVSAEES 103 (195)
T ss_pred EEeCHHHH
Confidence 99887643
No 12
>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only]
Probab=98.48 E-value=5.3e-06 Score=72.41 Aligned_cols=86 Identities=15% Similarity=0.215 Sum_probs=70.3
Q ss_pred CcHHHHHHHHhcCCeEEEEeeCCCCeeeeeeeeEEEcCCCcEEEEeCCc-c---chhccCCCeEEEEeeCC---------
Q 036007 118 FPAEASRTIMELSSIGTLSMLTSEGCPLGVGVRFAVDDEGSPVLCVSDS-C---KELSVDKKSSLHVQLDQ--------- 184 (287)
Q Consensus 118 s~AE~ARtLL~~~~~gtLATls~DG~P~~S~V~ya~d~dG~piLlvS~~-a---rNL~~dPRaSL~V~~~~--------- 184 (287)
...+.++.+|+.+.+|.||+. .+|.||..++.|+.+ +|. +++++.. . ..++.||.+++.+.+..
T Consensus 11 ~~~~~i~~~l~~~~~~~La~~-~~~~PyivP~~y~~~-~~~-lY~h~~~~grk~~~l~~~p~V~~ev~~~~~~~~~~~~~ 87 (166)
T COG3467 11 MSDEEIDAILAAGRVGRLAFA-GDGQPYVVPLNYGYE-GGH-LYFHGSPEGRKIELLRKNPLVCLEVDEIHGLVLKSPFN 87 (166)
T ss_pred CCHHHHHHHHhhCCEEEEEEc-CCCCcEEEEeEeEEe-CCe-EEEEeCCcchhhHHhhcCCcEEEEEEccccceeccccc
Confidence 446789999999999999995 456699999999998 365 4445544 3 88999999999998875
Q ss_pred CCCcCCeEEEEEEEEccCChHH
Q 036007 185 CGSRTPQCTIQGVLDKPKDRMI 206 (287)
Q Consensus 185 ~pla~~RVTL~G~a~~V~dee~ 206 (287)
...+...|.++|+++++++++.
T Consensus 88 ~s~~y~SVvv~G~~~~l~~~~~ 109 (166)
T COG3467 88 SSRNYRSVVVFGRAEELSDLEE 109 (166)
T ss_pred CCcceEEEEEEeEEEEcCChHH
Confidence 3566778999999999998655
No 13
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=98.45 E-value=2.8e-08 Score=91.34 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=107.5
Q ss_pred cccccccceeecccCCCCCCCCCCCCCcHHHHHHHHhcCCeEEEEeeCCCCeeeeeeeeEEEcCCCcEEEEeCCcc---c
Q 036007 92 RKLALKCSVSTVSCPTTHVGISNDKPFPAEASRTIMELSSIGTLSMLTSEGCPLGVGVRFAVDDEGSPVLCVSDSC---K 168 (287)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~rPs~AE~ARtLL~~~~~gtLATls~DG~P~~S~V~ya~d~dG~piLlvS~~a---r 168 (287)
-...+|||+- ..|+...-+- .-|-.-..++.+........|+|++.+|.|-+|..++..+ +|..+||+|..+ +
T Consensus 59 ~~~d~r~sil-~~~~g~~d~~--~~~Rl~~e~~afr~~~~sv~lat~~~~g~~~~syAp~~~~-~~d~~iyis~~arh~~ 134 (245)
T COG0748 59 DEADPRCSIL-LGEPGKGDEL--ALPRLTLEIEAFRLEFDSVALATLRERGLPRASYAPLYVD-DGDYYIYISEIARHAR 134 (245)
T ss_pred cccChhhhhe-ecCcCcCChh--hccchhHHHHHHHhccchHHHhhhhhcCCcCCCcCceEec-CCceEEEEehHHHHhh
Confidence 4567899987 4555422222 3334445666666788899999999999999999999998 577899999998 9
Q ss_pred hhccCCCeEEEEeeCCC----CCcCCeEEEEEEEEccCChHHHHHHHHHHHhhcCC------CCCCeeEEEEEEeEEEEe
Q 036007 169 ELSVDKKSSLHVQLDQC----GSRTPQCTIQGVLDKPKDRMISKRLLSMWKRRFGE------DVNEELIYVVAVERVLQM 238 (287)
Q Consensus 169 NL~~dPRaSL~V~~~~~----pla~~RVTL~G~a~~V~dee~~~~l~a~~~ar~g~------~~~df~l~RL~pe~V~~v 238 (287)
|+..+|.+|+++.+++. ...+.|++-...+..++.-+...........++|. .++||.++.+++.+.+++
T Consensus 135 N~~~~p~vs~m~iedea~a~s~~~r~rl~~hmnAd~~eai~~yaqv~~~~~e~~~~~I~~Id~~gdfll~~l~~~~gl~v 214 (245)
T COG0748 135 NLGFNPKVSVMFIEDEAKAKSAFARKRLREHMNADHAEAIAEYAQVLAQLAEATGGRIKGIDAMGDFLLFQLTPGQGLFV 214 (245)
T ss_pred ccCcCCchhhheecCchhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhcchhhcccccccceeeeccCCCceEE
Confidence 99999999999888853 22344554444444443322111111222223332 357999999999999999
Q ss_pred ecccccCcccChh
Q 036007 239 EDFAEDGIWVSSS 251 (287)
Q Consensus 239 gGFG~a~~~V~~e 251 (287)
-|||+++ .++.+
T Consensus 215 ~gFgqa~-~~~~d 226 (245)
T COG0748 215 KGFGQAY-AISGD 226 (245)
T ss_pred eccchhh-ccccc
Confidence 9999997 45544
No 14
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only]
Probab=98.44 E-value=1.6e-06 Score=74.03 Aligned_cols=119 Identities=17% Similarity=0.265 Sum_probs=90.4
Q ss_pred cHHHHHHHHhcCCeEEEEeeCCCCeeeeeeeeEEEcC-CCcEEEEeCCcc---chhccCCCeEEEEeeCCCCCcCCeEEE
Q 036007 119 PAEASRTIMELSSIGTLSMLTSEGCPLGVGVRFAVDD-EGSPVLCVSDSC---KELSVDKKSSLHVQLDQCGSRTPQCTI 194 (287)
Q Consensus 119 ~AE~ARtLL~~~~~gtLATls~DG~P~~S~V~ya~d~-dG~piLlvS~~a---rNL~~dPRaSL~V~~~~~pla~~RVTL 194 (287)
.......+++....|+|+|+..+|.|+.-+|.|--|. .|..++.-+... ..++.||+|.+.+..+.. ...|.|
T Consensus 6 ~~~~~~~~~e~~kv~~l~tv~~~g~phsRpM~f~hdg~~~tiwf~T~kds~~v~eik~n~~v~v~~~~~~~---~~fv~v 82 (145)
T COG3871 6 ALQALAELLEGSKVGMLATVQENGHPHSRPMTFNHDGPKGTIWFFTNKDSRKVEEIKKNPKVCVLFGYDDH---DAFVEV 82 (145)
T ss_pred HHHHHHHHHhhCceEEEEEecCCCCccccceeccCCCCcccEEeeccCchHHHHHHhhCCcEEEEEecCCC---cceEEE
Confidence 3556788999999999999999999999999854442 266544433333 889999999999988754 457999
Q ss_pred EEEEEccCChHHHHHHHHHHHhh------cCCCCCCeeEEEEEEeEEEEeecccc
Q 036007 195 QGVLDKPKDRMISKRLLSMWKRR------FGEDVNEELIYVVAVERVLQMEDFAE 243 (287)
Q Consensus 195 ~G~a~~V~dee~~~~l~a~~~ar------~g~~~~df~l~RL~pe~V~~vgGFG~ 243 (287)
.|+++.+++.+. .+.+|... .|.+-+++.+++++++++.|...-+.
T Consensus 83 ~Gtael~~dra~---~d~~W~~~~~~wFe~GkedP~l~~Lkv~~e~i~yw~~~~~ 134 (145)
T COG3871 83 SGTAELVEDRAK---IDELWTSVLEAWFEQGKEDPDLTMLKVTAEDIDYWNSGDN 134 (145)
T ss_pred EEEEEeeccHHH---HHHhhhhhHHHHHhcCCCCCCeEEEEEchhHhHHHhccCC
Confidence 999999988643 33444322 46677899999999999988874444
No 15
>PRK06733 hypothetical protein; Provisional
Probab=98.23 E-value=2.9e-05 Score=67.01 Aligned_cols=111 Identities=17% Similarity=0.176 Sum_probs=85.5
Q ss_pred CCCCcHHHHHHHHhcCCeEEEEeeCC-CCeeeeeeeeEE--EcCCCcEEEEeCCcc---chhccCCCeEEEEeeCCCCCc
Q 036007 115 DKPFPAEASRTIMELSSIGTLSMLTS-EGCPLGVGVRFA--VDDEGSPVLCVSDSC---KELSVDKKSSLHVQLDQCGSR 188 (287)
Q Consensus 115 ~rPs~AE~ARtLL~~~~~gtLATls~-DG~P~~S~V~ya--~d~dG~piLlvS~~a---rNL~~dPRaSL~V~~~~~pla 188 (287)
..|..-+...++|+.....+|+|++. ||+|+.+++..+ +| +....|-+..+. +||++||+++|.+.+++.
T Consensus 5 v~~~Lt~el~~~L~~~~~~~laTv~kedG~Pnv~~Iswv~a~d-~~tIr~A~~~~skT~~NLk~Np~v~I~~~~~~~--- 80 (151)
T PRK06733 5 VEPTLTEDLVQLLRKERIVTLATTDFEKQVPNVSAISWVYAVS-KTSIRFAVDQRSRIVENIRHNPGVVLTIIANES--- 80 (151)
T ss_pred chhhcCHHHHHHHcCCceEEEEEEccCCCceeEEEEEEEEEcC-CCEEEEEEccCcHhHHHHhhCCcEEEEEEeCCc---
Confidence 34566788899999999999999995 999999998854 45 466666666666 999999999999988754
Q ss_pred CCeEEEEEEEEccCChHHHHHHHHHHHhhcCCCCCCeeEEEEEEeEEEEeeccccc
Q 036007 189 TPQCTIQGVLDKPKDRMISKRLLSMWKRRFGEDVNEELIYVVAVERVLQMEDFAED 244 (287)
Q Consensus 189 ~~RVTL~G~a~~V~dee~~~~l~a~~~ar~g~~~~df~l~RL~pe~V~~vgGFG~a 244 (287)
..++.|.++.+.+.-. ..+ -...++.+++++|+=+--+|..
T Consensus 81 --~yqIkG~a~i~~e~ie-----~vp--------lk~s~vei~I~eVrdv~FyGa~ 121 (151)
T PRK06733 81 --VYSISGAAEILTDRME-----GVP--------LKLALIEVNVEEVRDVMFYGAK 121 (151)
T ss_pred --EEEEEEEEEEEeeecc-----ccc--------ceEEEEEEEEEEEEEeeeccce
Confidence 3789999988764311 111 1478999999999988756654
No 16
>TIGR00558 pdxH pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from PFAM but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer.
Probab=98.07 E-value=8.4e-05 Score=67.47 Aligned_cols=76 Identities=17% Similarity=0.148 Sum_probs=58.5
Q ss_pred hcCCeEEEEeeCCCCeeeeeeeeEEEcCCCcEEEEeCCcc---chhccCCCeEEEEeeCCCCCcCCeEEEEEEEEccCCh
Q 036007 128 ELSSIGTLSMLTSEGCPLGVGVRFAVDDEGSPVLCVSDSC---KELSVDKKSSLHVQLDQCGSRTPQCTIQGVLDKPKDR 204 (287)
Q Consensus 128 ~~~~~gtLATls~DG~P~~S~V~ya~d~dG~piLlvS~~a---rNL~~dPRaSL~V~~~~~pla~~RVTL~G~a~~V~de 204 (287)
...+.++|+|++.+|.|.+-+|.+-...++.++|+.+..+ ++|+.||+|+|++..+.. ...|.|.|.++.++++
T Consensus 47 ~~~~~~~LaTvd~~G~P~~R~v~lr~~~~~~l~F~T~~~S~K~~eL~~np~v~l~f~~~~~---~~qvrv~G~a~~~~~~ 123 (217)
T TIGR00558 47 TEPNAMTLSTVDESGRPSSRMVLLKELDERGFVFYTNYGSRKGHQIETNPNAALVFFWPDL---ERQVRVEGKVEKLPRE 123 (217)
T ss_pred CCCceEEEEEECCCCCEEEEEEEEEEECCCcEEEEECCCChHHHHHHhCCcEEEEEEeCCC---CEEEEEEEEEEECCHH
Confidence 3567899999999999999888774433444555555555 899999999999988653 3479999999998776
Q ss_pred HH
Q 036007 205 MI 206 (287)
Q Consensus 205 e~ 206 (287)
+.
T Consensus 124 ~~ 125 (217)
T TIGR00558 124 ES 125 (217)
T ss_pred HH
Confidence 43
No 17
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism]
Probab=97.95 E-value=0.00016 Score=65.10 Aligned_cols=111 Identities=14% Similarity=0.187 Sum_probs=79.3
Q ss_pred HHHhcCCeEEEEeeCCCCeeeeeeeeEE-EcCCCcEEEEeCCcc---chhccCCCeEEEEeeCCCCCcCCeEEEEEEEEc
Q 036007 125 TIMELSSIGTLSMLTSEGCPLGVGVRFA-VDDEGSPVLCVSDSC---KELSVDKKSSLHVQLDQCGSRTPQCTIQGVLDK 200 (287)
Q Consensus 125 tLL~~~~~gtLATls~DG~P~~S~V~ya-~d~dG~piLlvS~~a---rNL~~dPRaSL~V~~~~~pla~~RVTL~G~a~~ 200 (287)
.=+...+.++|||++.+|.|.+-+|-.- +|..| ++||-+-.+ +.|+.||.+++++-..+- ..+|.|.|.+++
T Consensus 41 ~~~~ePnAm~lATvd~~G~P~~R~VLLK~~DerG-fvFyTN~~S~Kg~eLa~np~Aal~F~W~~L---~RQVrv~G~ve~ 116 (214)
T COG0259 41 AEVNEPNAMTLATVDEQGRPSSRIVLLKELDERG-FVFYTNYGSRKGRELAANPYAALLFPWKEL---ERQVRVEGRVER 116 (214)
T ss_pred cccCCCceeEEEeecCCCCceeeEEEecccCCCc-EEEEeccCCcchhhHhhCcceeEEecchhc---cceEEEeeeeee
Confidence 3466788999999999999999887654 45556 455555555 899999999999976643 237999999999
Q ss_pred cCChHHHHHHH-----------------------------HHHHhhcCCC----CCCeeEEEEEEeEEEEee
Q 036007 201 PKDRMISKRLL-----------------------------SMWKRRFGED----VNEELIYVVAVERVLQME 239 (287)
Q Consensus 201 V~dee~~~~l~-----------------------------a~~~ar~g~~----~~df~l~RL~pe~V~~vg 239 (287)
|++++..++.. +-+.++|+.. .+.|.-|||.|++|-|=.
T Consensus 117 vs~eesd~Yf~sRPr~S~iGAWAS~QS~~i~~r~~Le~~~ae~~~kf~~~~iP~P~~WgG~ri~p~~iEFWq 188 (214)
T COG0259 117 VSDEESDAYFASRPRGSQIGAWASKQSRPIASRAALEAKVAELTAKFADGEIPRPPHWGGFRIVPESIEFWQ 188 (214)
T ss_pred CCHHHHHHHHhcCCCcCccchhhccCccccCCHHHHHHHHHHHHHhcCCCCCCCCCCccceEeeeeEEEEec
Confidence 98875532221 2223345432 245788999999997654
No 18
>PF10615 DUF2470: Protein of unknown function (DUF2470); InterPro: IPR019595 This entry represents a putative haem-iron utilisation family of proteins, as many members are annotated as being pyridoxamine 5'-phosphate oxidase-related, FMN-binding; however the function of this domain is not known. ; PDB: 3GAS_D 3SWJ_A 2ARZ_B.
Probab=97.93 E-value=5.3e-06 Score=64.12 Aligned_cols=30 Identities=30% Similarity=0.633 Sum_probs=25.3
Q ss_pred CCcchh-hhHHHHHHHhhcCHHHHHHHHhhC
Q 036007 258 PDPLRH-FAEKIVNEINLNNMEDVYRFCNIY 287 (287)
Q Consensus 258 PDPL~~-~e~~ll~HLN~dH~e~v~~~~~~y 287 (287)
|||+.. .++.||+|||+||.|++.+||+.|
T Consensus 2 ~dp~~~~~~~~ii~HMN~DH~d~l~~~~~~~ 32 (83)
T PF10615_consen 2 PDPLAPEAAARIIEHMNDDHADDLLLYARHY 32 (83)
T ss_dssp --TTTTHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 799995 899999999999999999999876
No 19
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=97.75 E-value=0.00045 Score=69.31 Aligned_cols=76 Identities=25% Similarity=0.281 Sum_probs=59.7
Q ss_pred HhcCCeEEEEeeCCCCeeeeeeeeE-EEcCCCcEEEEeCCcc---chhccCCCeEEEEeeCCCCCcCCeEEEEEEEEccC
Q 036007 127 MELSSIGTLSMLTSEGCPLGVGVRF-AVDDEGSPVLCVSDSC---KELSVDKKSSLHVQLDQCGSRTPQCTIQGVLDKPK 202 (287)
Q Consensus 127 L~~~~~gtLATls~DG~P~~S~V~y-a~d~dG~piLlvS~~a---rNL~~dPRaSL~V~~~~~pla~~RVTL~G~a~~V~ 202 (287)
+...+.++|||++.+|.|.+-.|-+ .+|++|. +|+....+ ++|+.||+++|++..++. ..+|.|.|.+++++
T Consensus 286 ~~ep~am~LATvd~~G~P~~R~VlLk~~d~~g~-~F~Tn~~S~K~~eL~~Np~aal~F~w~~~---~rQvRv~G~a~~~~ 361 (462)
T PLN03049 286 LREPNAMTLATAGEDGRPSARIVLLKGVDKRGF-VWYTNYDSRKAHELSANPKASLVFYWDGL---HRQVRVEGSVEKVS 361 (462)
T ss_pred CCCCCeeEEEEECCCCCeeEEEEEEeEEcCCcE-EEEECCCCHHHHHHhhCCcEEEEeecCCC---CEEEEEEEEEEECC
Confidence 3478899999999999999988765 3565664 56655555 999999999999987643 23799999999998
Q ss_pred ChHH
Q 036007 203 DRMI 206 (287)
Q Consensus 203 dee~ 206 (287)
+++.
T Consensus 362 ~~~s 365 (462)
T PLN03049 362 EEES 365 (462)
T ss_pred HHHH
Confidence 6544
No 20
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.62 E-value=0.0013 Score=55.40 Aligned_cols=128 Identities=9% Similarity=0.167 Sum_probs=96.9
Q ss_pred HHHHHHHhcCCeEEEEeeCCCCeeeeeeeeEEEcCCCcEEEEeCCcc----chhccCCCeEEEEeeCCC-CCcCCeEEEE
Q 036007 121 EASRTIMELSSIGTLSMLTSEGCPLGVGVRFAVDDEGSPVLCVSDSC----KELSVDKKSSLHVQLDQC-GSRTPQCTIQ 195 (287)
Q Consensus 121 E~ARtLL~~~~~gtLATls~DG~P~~S~V~ya~d~dG~piLlvS~~a----rNL~~dPRaSL~V~~~~~-pla~~RVTL~ 195 (287)
+++-++++....-+++. ..+|.|++....|+.|....-+|+++... +-+..|+++..+|..++- ......|...
T Consensus 3 ~rI~~flkkq~v~Tw~~-~~e~~~w~asafYvFDek~~ali~~T~e~TrHa~l~~~ns~VAgtv~~qsKtva~ikGVQfk 81 (145)
T COG3787 3 TRISRFLKKQHVLTWCV-QQEGELWCASAFYVFDEKNVALIILTEEKTRHAQLSGPNSAVAGTVAGQSKTVALIKGVQFK 81 (145)
T ss_pred hHHHHHHHhhheeeeee-ecCCceeeeeeEEEEcccceEEEEEeccchhHHHhhCCCCceeeEeccCceeeeeeeeeeee
Confidence 45667788888888887 56899999999999997665667777766 445679999999988764 2335579999
Q ss_pred EEEEccCChHHHHHHHHHHHhhcCC-CCCCeeEEEEEEeEEEEee---cccccCcccCh
Q 036007 196 GVLDKPKDRMISKRLLSMWKRRFGE-DVNEELIYVVAVERVLQME---DFAEDGIWVSS 250 (287)
Q Consensus 196 G~a~~V~dee~~~~l~a~~~ar~g~-~~~df~l~RL~pe~V~~vg---GFG~a~~~V~~ 250 (287)
|....+..++. +.++..|..+|+. .+..-.+|.|+++.+.+++ |||+--+|..+
T Consensus 82 ge~~~l~~~q~-~~Ark~Y~~rfp~akvd~a~vwqleL~~ikftdNaLG~~kklew~r~ 139 (145)
T COG3787 82 GEISRLSGEQS-DAARKAYNRRFPVAKVDSAPVWQLELDEIKFTDNALGFGKKLEWLRG 139 (145)
T ss_pred eeehhhhcchH-HHHHHHHhccCchhhcccCceEEeeeeeEEeecccccccceEEEecc
Confidence 99999988755 5567778788875 3455789999999999986 67764235443
No 21
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=97.47 E-value=0.0019 Score=66.10 Aligned_cols=109 Identities=16% Similarity=0.160 Sum_probs=76.8
Q ss_pred hcCCeEEEEeeCCCCeeeeeeeeEE-EcCCCcEEEEeCCcc---chhccCCCeEEEEeeCCCCCcCCeEEEEEEEEccCC
Q 036007 128 ELSSIGTLSMLTSEGCPLGVGVRFA-VDDEGSPVLCVSDSC---KELSVDKKSSLHVQLDQCGSRTPQCTIQGVLDKPKD 203 (287)
Q Consensus 128 ~~~~~gtLATls~DG~P~~S~V~ya-~d~dG~piLlvS~~a---rNL~~dPRaSL~V~~~~~pla~~RVTL~G~a~~V~d 203 (287)
...+.++|||++.+|.|.+-.|-+- +|++| ++|+....+ +.|+.||+++|++.+.+. ..+|.|.|.++++++
T Consensus 369 ~eP~Am~LATv~~~G~P~~RtVlLk~~d~~g-~~F~Tn~~S~K~~el~~Np~aal~F~w~~l---~rQVRi~G~v~~~~~ 444 (544)
T PLN02918 369 REPNAMALSTANKDGKPSSRMVLLKGVDKNG-FVWYTNYESQKGSDLSENPSAALLFYWEEL---NRQVRVEGSVQKVPE 444 (544)
T ss_pred CCCccceEEeeCCCCCeeeEEEEEeEEcCCc-eEEEECCCChhHHHHHhCCcEEEEeeeccc---cEEEEEEEEEEECCH
Confidence 3677899999999999998777653 56555 345544444 889999999999988754 237999999999988
Q ss_pred hHHHHHHHH-----------------------------HHHhhcCC-C----CCCeeEEEEEEeEEEEeec
Q 036007 204 RMISKRLLS-----------------------------MWKRRFGE-D----VNEELIYVVAVERVLQMED 240 (287)
Q Consensus 204 ee~~~~l~a-----------------------------~~~ar~g~-~----~~df~l~RL~pe~V~~vgG 240 (287)
++..++... -+.++|.. + .+.|.-|||.|+++-|--|
T Consensus 445 ~es~~yf~sRp~~Sqi~A~aS~QS~~i~~r~~L~~~~~~~~~~~~~~~~vp~P~~WgGy~v~P~~iEFWQg 515 (544)
T PLN02918 445 SESENYFHSRPRGSQIGAIVSKQSSVVPGRHVLYQEYKELEKKYSDGSVIPKPKNWGGYRLKPNLFEFWQG 515 (544)
T ss_pred HHHHHHHHhCCccccceEEecCCCCcCCCHHHHHHHHHHHHHHhcCCCCCCCCCCceeEEEecCEEEECCC
Confidence 754333211 11223422 1 2468999999999976654
No 22
>KOG2586 consensus Pyridoxamine-phosphate oxidase [Coenzyme transport and metabolism]
Probab=96.76 E-value=0.0027 Score=57.29 Aligned_cols=73 Identities=19% Similarity=0.248 Sum_probs=57.2
Q ss_pred CCeEEEEeeCCCCeeeeeeeeEE-EcCCCcEEEEeCC-cc---chhccCCCeEEEEeeCCCCCcCCeEEEEEEEEccCCh
Q 036007 130 SSIGTLSMLTSEGCPLGVGVRFA-VDDEGSPVLCVSD-SC---KELSVDKKSSLHVQLDQCGSRTPQCTIQGVLDKPKDR 204 (287)
Q Consensus 130 ~~~gtLATls~DG~P~~S~V~ya-~d~dG~piLlvS~-~a---rNL~~dPRaSL~V~~~~~pla~~RVTL~G~a~~V~de 204 (287)
.+.++|||++.||.|-.-+|-|- .|++|. ++|.+- .+ .||..||.++|++..++-- .+|.|.|.+++++++
T Consensus 56 ~~am~LsT~~~d~rvssRmvLlKgl~~~gf-~fytn~~~srk~kdL~~NP~Aal~Fyw~~l~---rQVRveG~ve~l~~e 131 (228)
T KOG2586|consen 56 INAMTLSTADKDGRVSSRMVLLKGLDHDGF-VFYTNYGTSRKGKDLQENPNAALLFYWEDLN---RQVRVEGIVEKLPRE 131 (228)
T ss_pred hhheeehhccccCCcceeeeeeecccCCCe-EEEeeccccccccccccCCcceEEEeehhcc---ceeEEEeccccCCHH
Confidence 45678999999999998888774 677785 455554 22 8999999999999887521 168899999999887
Q ss_pred HH
Q 036007 205 MI 206 (287)
Q Consensus 205 e~ 206 (287)
++
T Consensus 132 e~ 133 (228)
T KOG2586|consen 132 EA 133 (228)
T ss_pred HH
Confidence 65
No 23
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein. This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase.
Probab=96.56 E-value=0.031 Score=45.92 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=50.4
Q ss_pred CCeEEEEeeC-CCCeeeeeeeeEEEcCCCcEEEEeCCc----c----chhccCCCeEEEEeeCCCCCcCCeEEEEEEEEc
Q 036007 130 SSIGTLSMLT-SEGCPLGVGVRFAVDDEGSPVLCVSDS----C----KELSVDKKSSLHVQLDQCGSRTPQCTIQGVLDK 200 (287)
Q Consensus 130 ~~~gtLATls-~DG~P~~S~V~ya~d~dG~piLlvS~~----a----rNL~~dPRaSL~V~~~~~pla~~RVTL~G~a~~ 200 (287)
...+.|-|.. ..|.|+.++++|..++ |..++..|.. . +||+.+|++.+.+ . .-+..+.++.
T Consensus 7 ~p~~lL~t~GRkSG~~r~tpl~~~~~~-~~~~vvas~~G~~~~p~W~~Nl~A~p~v~v~~--------~-g~~~~~~ar~ 76 (113)
T TIGR00026 7 LPVLLLTTTGRKSGKPRTTPVTYVRHD-PGVLIVASNGGAPRHPDWYKNLKANPRVRVRV--------G-GKTFVATARL 76 (113)
T ss_pred CCEEEEEECCCCCCcEEEEEEEEEEEC-CEEEEEEecCCCCCCCHHHHHhhhCCcEEEEE--------C-CEEEEEEEEE
Confidence 3467788875 5899999999999884 5555553442 1 9999999999987 1 2258899999
Q ss_pred cCChHH
Q 036007 201 PKDRMI 206 (287)
Q Consensus 201 V~dee~ 206 (287)
+++++.
T Consensus 77 v~~~e~ 82 (113)
T TIGR00026 77 VSGDER 82 (113)
T ss_pred CCchhH
Confidence 988755
No 24
>PF04299 FMN_bind_2: Putative FMN-binding domain; InterPro: IPR007396 In Bacillus subtilis, family member P21341 from SWISSPROT, PAI 2, is involved in the negative regulation of protease synthesis and sporulation [].; PDB: 2OL5_A.
Probab=95.99 E-value=0.12 Score=45.38 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=53.4
Q ss_pred CCcHHHHHHHHhcCCeEEEEeeCCCCeeeeeeeeEEEcC-CCcEEEEeCCcc------chhccCCCeEEEEeeC-----C
Q 036007 117 PFPAEASRTIMELSSIGTLSMLTSEGCPLGVGVRFAVDD-EGSPVLCVSDSC------KELSVDKKSSLHVQLD-----Q 184 (287)
Q Consensus 117 Ps~AE~ARtLL~~~~~gtLATls~DG~P~~S~V~ya~d~-dG~piLlvS~~a------rNL~~dPRaSL~V~~~-----~ 184 (287)
.+..+..+.++++...|+|.|. .+|.|.++.+++.++. +|....++..++ +.+..+..|-+.+..+ +
T Consensus 9 ~~d~~~l~~~i~~~pfa~Lvt~-~~~~~~athlP~~l~~~~~~~~~L~gHlAr~NP~~~~l~~~~~vl~iF~Gp~aYISP 87 (169)
T PF04299_consen 9 EEDPEELRAFIRAHPFATLVTN-GDGGPVATHLPFLLDEDDGGRGTLIGHLARANPQWKALDDGQEVLVIFQGPHAYISP 87 (169)
T ss_dssp ---HCHHHHHHHHS-EEEEEEE-ETTEEEEEEEE-EE-T---TSSEEEEEEETTSGGGGGTT-TS-EEEEEEEEEEEE-C
T ss_pred cCCHHHHHHHHHhCCcEEEEEc-CCCCcceeeecEEEEeeeCCCCEEEEEeCCCCHhHhhcCCCCcEEEEEECCCeeECc
Confidence 3455678999999999999994 4566999999999985 122223333333 6666677777777665 2
Q ss_pred CCC-------------cCCeEEEEEEEEccCChHH
Q 036007 185 CGS-------------RTPQCTIQGVLDKPKDRMI 206 (287)
Q Consensus 185 ~pl-------------a~~RVTL~G~a~~V~dee~ 206 (287)
..+ ...-|-+.|+++.++|++.
T Consensus 88 sWYp~k~~~~~~VPTWNY~aVh~~G~~~~~~d~~~ 122 (169)
T PF04299_consen 88 SWYPTKAEHGKVVPTWNYAAVHAYGTVRIIDDPDW 122 (169)
T ss_dssp CCS----STTS---EEEEEEEEEEEEEEE---HHH
T ss_pred hhhcccCcCCCCCCCcCEEEEEEEEEEEEEeCHHH
Confidence 222 2556889999999976543
No 25
>COG5015 Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.2 Score=42.06 Aligned_cols=112 Identities=8% Similarity=0.095 Sum_probs=70.2
Q ss_pred HHHHHHhcCCeEEEEeeCCCCeeeeeeeeEEEcCCCcEEEEeCCcc----chhccCCCeEEEEeeCCCCCcCCeEEEEEE
Q 036007 122 ASRTIMELSSIGTLSMLTSEGCPLGVGVRFAVDDEGSPVLCVSDSC----KELSVDKKSSLHVQLDQCGSRTPQCTIQGV 197 (287)
Q Consensus 122 ~ARtLL~~~~~gtLATls~DG~P~~S~V~ya~d~dG~piLlvS~~a----rNL~~dPRaSL~V~~~~~pla~~RVTL~G~ 197 (287)
.+.++|+.+..+.|||+. +|.|-.-+.-+.....+..|+ .+... +.+..||.+++.=.+-. . .-|.|+|+
T Consensus 3 d~leFLken~~~~laTve-~gkPrvRpfq~~f~~g~KlYf-cTantK~~yKqik~np~vefcg~~kd-g---~~vrlrg~ 76 (132)
T COG5015 3 DPLEFLKENKSVALATVE-DGKPRVRPFQVMFVEGEKLYF-CTANTKPYYKQIKKNPEVEFCGMDKD-G---VMVRLRGR 76 (132)
T ss_pred cHHHHHHhCCcEEEEEcc-CCCcceeeccceeeeCCEEEE-EeCCChHHHHHHhhCCCeEEEEecCC-c---eEEEEeee
Confidence 456789999999999986 899977666555553455444 44433 99999999999643332 1 24669999
Q ss_pred EEccCChHHHHHHHHHHH--hh-cCC-CCCCeeEEEEEEeEEEEee
Q 036007 198 LDKPKDRMISKRLLSMWK--RR-FGE-DVNEELIYVVAVERVLQME 239 (287)
Q Consensus 198 a~~V~dee~~~~l~a~~~--ar-~g~-~~~df~l~RL~pe~V~~vg 239 (287)
++.+++-+..+.+-..+. +. |.. +-+-|.++-++..++...+
T Consensus 77 a~f~~nielkk~ale~yP~Lkeiy~tddnpifevfyld~~e~~m~d 122 (132)
T COG5015 77 AEFVENIELKKLALEIYPVLKEIYPTDDNPIFEVFYLDSGEGEMYD 122 (132)
T ss_pred EEeccchHHHHHHhhhchhhHhhccCCCCCEEEEEEEeeccEEEEE
Confidence 999988666443322211 11 222 1234666666665554433
No 26
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterised as a deazaflavin-dependent nitroreductase [, ]. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3R5Y_D 3R5W_A 3R5R_E 3R5L_A 3R5P_A 3R5Z_B 3H96_A.
Probab=95.19 E-value=0.12 Score=43.51 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=45.9
Q ss_pred eEEEEeeCC-CCeeeeeeeeEEEcCCCcEEEEeCCc----c----chhccCCCeEEEEeeCCCCCcCCeEEEEEEEEccC
Q 036007 132 IGTLSMLTS-EGCPLGVGVRFAVDDEGSPVLCVSDS----C----KELSVDKKSSLHVQLDQCGSRTPQCTIQGVLDKPK 202 (287)
Q Consensus 132 ~gtLATls~-DG~P~~S~V~ya~d~dG~piLlvS~~----a----rNL~~dPRaSL~V~~~~~pla~~RVTL~G~a~~V~ 202 (287)
.+.|.|.+. .|.|+.+++.|..+ +|+.++..+.. . +||+.+|.|.+.+ ..-+..++++.++
T Consensus 27 ~~lLtt~GRkSG~~r~tpl~~~~~-g~~~~vva~~gG~~~~p~W~~Nl~A~p~v~v~~---------~g~~~~~~a~~~~ 96 (132)
T PF04075_consen 27 VLLLTTTGRKSGRPRRTPLVYVRD-GGRLVVVASNGGAPRHPDWYRNLRANPEVTVEV---------GGRRRRVRAREVT 96 (132)
T ss_dssp EEEEEEE-TTT-SEEEEEEEEEEE-TTEEEEE-SGGGCSSS-HHHHHHHHHSEEEEEE---------TTEEEEEEEEEE-
T ss_pred EEEEEECCCCCCCeEEEEEEEEEe-CCEEEEEEccCCCCCCChhHHhhhhCCcEEEEE---------CCEEEEEEEEEcC
Confidence 677888764 89999999998888 46665555533 2 9999999999876 2346778888887
Q ss_pred ChHH
Q 036007 203 DRMI 206 (287)
Q Consensus 203 dee~ 206 (287)
+++.
T Consensus 97 ~~er 100 (132)
T PF04075_consen 97 DDER 100 (132)
T ss_dssp HHHH
T ss_pred chHH
Confidence 6543
No 27
>COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only]
Probab=94.75 E-value=0.18 Score=44.45 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=69.0
Q ss_pred HHHHHHHhcCCeEEEEeeCCCCeeeeeeeeEEE--cCCCcEEEEeCCcc-----chhccCCCeEEEEeeCC-CCCcCCeE
Q 036007 121 EASRTIMELSSIGTLSMLTSEGCPLGVGVRFAV--DDEGSPVLCVSDSC-----KELSVDKKSSLHVQLDQ-CGSRTPQC 192 (287)
Q Consensus 121 E~ARtLL~~~~~gtLATls~DG~P~~S~V~ya~--d~dG~piLlvS~~a-----rNL~~dPRaSL~V~~~~-~pla~~RV 192 (287)
...|+++.....+.|+|++.||.|=..+.+|.. |.+| +.+.+.+.. +||..||++++...... ... -.
T Consensus 32 ~~~~e~~~~~~~~~laT~d~dG~p~~~~~p~~qr~d~~~-~~~v~d~~~~~~~~~~lgnn~~~tl~n~~~~~~~~---~f 107 (173)
T COG3576 32 NHYREFIQTSQLAALATVDKDGPPNVDPIPFAQRGDPAG-FTIVIDDNTAGKTDRNLGNNPKITLRNILRNRRAL---LF 107 (173)
T ss_pred HhhhhhhccccEEEEEEeccCCCCCcCccchhhccCCCC-ceEEeCcccccccccccccCccceeEEeccCCccc---eE
Confidence 356777778999999999999999999999854 4344 345555543 88999999999987753 211 12
Q ss_pred EEEEEEEccCChHHHHHHHHHHHhhcCCCCCCeeEEEEEEeEEEEee
Q 036007 193 TIQGVLDKPKDRMISKRLLSMWKRRFGEDVNEELIYVVAVERVLQME 239 (287)
Q Consensus 193 TL~G~a~~V~dee~~~~l~a~~~ar~g~~~~df~l~RL~pe~V~~vg 239 (287)
.|.|.++........... ..+.+-.+.+...-....+.+++++++-
T Consensus 108 ~v~gt~~I~~~g~~~~~~-~~~~~~~~~~l~pk~~~vv~v~~v~~~~ 153 (173)
T COG3576 108 LVKGTARIQGRGAVYDAV-VKLAAFLMDGLPPKSAIVVTVEEVYFLA 153 (173)
T ss_pred EecceEEEEeccceehHH-hhhhHhhccCCCCceeEEEEeehhhhhh
Confidence 333333332221100000 1111112223344567788888888775
No 28
>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E. coli and mammalian cells. This entry represents the FMN-binding domain of pyridoxamine 5'-phosphate oxidases that belong to the Alr4036 family.; GO: 0010181 FMN binding; PDB: 2I51_B 2OU5_B.
Probab=94.32 E-value=0.22 Score=40.07 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=49.5
Q ss_pred hcCCeEEEEeeC-CCCeeeeeeeeE-EEcCC----CcEEEEeCCcc----chhc-cCCCeEEEEeeCCCCCcCCeEEEEE
Q 036007 128 ELSSIGTLSMLT-SEGCPLGVGVRF-AVDDE----GSPVLCVSDSC----KELS-VDKKSSLHVQLDQCGSRTPQCTIQG 196 (287)
Q Consensus 128 ~~~~~gtLATls-~DG~P~~S~V~y-a~d~d----G~piLlvS~~a----rNL~-~dPRaSL~V~~~~~pla~~RVTL~G 196 (287)
...++.+|||++ ++|.|.+=.|-| .+.++ .+.+.+.++.. +.|. .||++++++..+.. .-++.|.|
T Consensus 18 ~~~~~~~LATv~~~~~~P~~RTvVlRgf~~~~~~~~~~L~f~TD~RS~Kv~~l~~~~p~~e~~~~~~~~---~~Q~Ri~G 94 (100)
T PF12766_consen 18 HPFRYFQLATVDPPDGSPRVRTVVLRGFDPDLKPESDLLTFHTDARSPKVAQLASANPRVELVFWFPET---REQFRIRG 94 (100)
T ss_dssp CGGGCEEEEEEE-TTTEEEEEEEEEEEEETT----TTEEEEEEETTSHHHHHHH-H--EEEEEEEECCC---TEEEEEEE
T ss_pred CCCceeEEEEecCCCCCCceeEEEEcCcccccccccCeEEEEecCCchhHHHHhccCCCEEEEEEeCCc---cEEEEEEE
Confidence 457889999999 799997755444 34443 34455555544 8899 99999999988854 23678899
Q ss_pred EEEcc
Q 036007 197 VLDKP 201 (287)
Q Consensus 197 ~a~~V 201 (287)
++..+
T Consensus 95 ~a~ii 99 (100)
T PF12766_consen 95 RASII 99 (100)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88765
No 29
>COG2808 PaiB Transcriptional regulator [Transcription]
Probab=87.86 E-value=8.2 Score=35.10 Aligned_cols=91 Identities=14% Similarity=0.164 Sum_probs=62.6
Q ss_pred CCCCcHHHHHHHHhcCCeEEEEeeCCCCeeeeeeeeEEEcC-CCcEEEEeCCcc------chhccCCCeEEEEeeCC---
Q 036007 115 DKPFPAEASRTIMELSSIGTLSMLTSEGCPLGVGVRFAVDD-EGSPVLCVSDSC------KELSVDKKSSLHVQLDQ--- 184 (287)
Q Consensus 115 ~rPs~AE~ARtLL~~~~~gtLATls~DG~P~~S~V~ya~d~-dG~piLlvS~~a------rNL~~dPRaSL~V~~~~--- 184 (287)
=+.+..+....+++....|+|.| ...|.|+++.++|.++. +|.-+.+...++ +.+.+...|=+.++.+.
T Consensus 7 F~~~d~~~L~a~ir~~pfgtlvt-~~~~~p~AthlP~ll~e~~~~~~~L~~HlAraNp~w~~~~~~~~vLvvFqgpdAYI 85 (209)
T COG2808 7 FREEDPEVLHALIRAHPFGTLVT-SGGGGPFATHLPFLLNEEEGGEGVLIAHLARANPQWRGLEDGQPVLVVFQGPDAYI 85 (209)
T ss_pred cccCCHHHHHHHHHhCCceEEEe-ccCCccccccCceEEeccCCCceEEEeeecccCCcccccCCCCeEEEEEeCCCccc
Confidence 35566788999999999999999 56788999999999876 334455566666 33333333333333331
Q ss_pred --CCC-------------cCCeEEEEEEEEccCChHH
Q 036007 185 --CGS-------------RTPQCTIQGVLDKPKDRMI 206 (287)
Q Consensus 185 --~pl-------------a~~RVTL~G~a~~V~dee~ 206 (287)
.++ .+.-|-..|++..++|++.
T Consensus 86 SP~WY~sK~e~~~~VPTWNY~aVHayG~~~~~~D~~~ 122 (209)
T COG2808 86 SPAWYPSKRETPKVVPTWNYVAVHAYGTVRIIEDDEW 122 (209)
T ss_pred CcccccccccCCCcCCCcceEEEEEecceeeeccHHH
Confidence 111 2446889999999999854
No 30
>PF04289 DUF447: Protein of unknown function (DUF447); InterPro: IPR007386 This entry contains archaeal and bacterial proteins of unknown function.; PDB: 2IML_A 3B5M_C 2PTF_A 2NR4_A.
Probab=57.27 E-value=22 Score=31.23 Aligned_cols=50 Identities=8% Similarity=0.072 Sum_probs=35.4
Q ss_pred EEEEeeCCCCeeeeeeeeEEEcCCCcEEEEeCCcc---chhccCCCeEEEEeeCC
Q 036007 133 GTLSMLTSEGCPLGVGVRFAVDDEGSPVLCVSDSC---KELSVDKKSSLHVQLDQ 184 (287)
Q Consensus 133 gtLATls~DG~P~~S~V~ya~d~dG~piLlvS~~a---rNL~~dPRaSL~V~~~~ 184 (287)
..+.|.+.+ .|..+++-...+ ++..++.+=..+ +||.+++.+.+.|++++
T Consensus 3 ~IvtT~~~~-~~N~APiGi~~~-~~~~~~~lf~gS~T~~Nl~~~~~~vvnit~Dp 55 (177)
T PF04289_consen 3 VIVTTKNED-EPNAAPIGIIRD-GDELIIRLFKGSHTYENLKETGYFVVNITDDP 55 (177)
T ss_dssp EEEEEESTT--EEEEEEEEEES-SSEEEEEEETTSHHHHHHHHHSEEEEEE---H
T ss_pred EEEEECCCC-CCcCCcEEEEEE-CCEEEEEEcCCCchHHHHhhCCEEEEEECCCH
Confidence 356787778 899999998886 355555554443 99999999999999874
No 31
>PF10012 DUF2255: Uncharacterized protein conserved in bacteria (DUF2255); InterPro: IPR016888 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=45.10 E-value=1.8e+02 Score=24.18 Aligned_cols=79 Identities=6% Similarity=0.140 Sum_probs=47.3
Q ss_pred HhcCCeEEEEeeCCCCeeee--eeeeEEEcCCCcEEEEeCCcc-----chhccCCCeEEEEeeCCCCCcCCeEEEEE---
Q 036007 127 MELSSIGTLSMLTSEGCPLG--VGVRFAVDDEGSPVLCVSDSC-----KELSVDKKSSLHVQLDQCGSRTPQCTIQG--- 196 (287)
Q Consensus 127 L~~~~~gtLATls~DG~P~~--S~V~ya~d~dG~piLlvS~~a-----rNL~~dPRaSL~V~~~~~pla~~RVTL~G--- 196 (287)
+....-..+++...||.=++ +.+|.+.. +|+.|+.--... +.-... ..+|+++-|
T Consensus 6 i~~adel~iap~r~DG~t~~~p~~IW~V~v-dd~lYVRs~~G~~s~Wy~~A~~~--------------~~GrI~a~G~~~ 70 (116)
T PF10012_consen 6 IDAADELHIAPFREDGKTLRTPTWIWVVRV-DDDLYVRSYNGRNSRWYRAALAQ--------------GAGRIRAGGVEK 70 (116)
T ss_pred cCccceEEeccccCCCcccCCCeeEEEEEE-CCEEEEEecCCCcCHHHHHHhhC--------------CCcEEEECCEEe
Confidence 34566778899889995555 66777766 476544321111 111111 134555555
Q ss_pred --EEEccCChHHHHHHHHHHHhhcCC
Q 036007 197 --VLDKPKDRMISKRLLSMWKRRFGE 220 (287)
Q Consensus 197 --~a~~V~dee~~~~l~a~~~ar~g~ 220 (287)
..++++|++....+++.|.+||+.
T Consensus 71 dV~F~~v~d~~~~~~iD~AYr~KY~~ 96 (116)
T PF10012_consen 71 DVTFEPVTDPALNDAIDAAYRAKYGG 96 (116)
T ss_pred eEEEEeCCCHHHHHHHHHHHHHhcCC
Confidence 345555666678888999999875
No 32
>PF13110 DUF3966: Protein of unknown function (DUF3966)
Probab=24.48 E-value=30 Score=24.09 Aligned_cols=13 Identities=54% Similarity=0.859 Sum_probs=11.0
Q ss_pred chhhhhhhhhhhc
Q 036007 28 NKFSQKQNLQKTK 40 (287)
Q Consensus 28 ~~~~~~~~~~~~~ 40 (287)
.||||..||+|..
T Consensus 7 rkfsqernlekse 19 (50)
T PF13110_consen 7 RKFSQERNLEKSE 19 (50)
T ss_pred hhhhhhhcchHHH
Confidence 5899999999864
No 33
>PF08922 DUF1905: Domain of unknown function (DUF1905); InterPro: IPR015018 This family consist of hypothetical bacterial proteins. ; PDB: 2D9R_A.
Probab=23.41 E-value=3e+02 Score=20.89 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=26.2
Q ss_pred cHHHHHHHHhc--CCeEEEEeeCCCCeeeeeeeeEEEcCCCcEEEEeCCc
Q 036007 119 PAEASRTIMEL--SSIGTLSMLTSEGCPLGVGVRFAVDDEGSPVLCVSDS 166 (287)
Q Consensus 119 ~AE~ARtLL~~--~~~gtLATls~DG~P~~S~V~ya~d~dG~piLlvS~~ 166 (287)
|.+.+..+-.. .+.-+-+|+ ||.+|-+.+.. ..+|..+|.++..
T Consensus 18 P~~v~~~l~~~~~g~v~V~~tI--~g~~~~~sl~p--~g~G~~~Lpv~~~ 63 (80)
T PF08922_consen 18 PFDVAEELGEGGWGRVPVRGTI--DGHPWRTSLFP--MGNGGYILPVKAA 63 (80)
T ss_dssp -S-HHHHH--S--S-EEEEEEE--TTEEEEEEEEE--SSTT-EEEEE-HH
T ss_pred CHHHHHHhccccCCceEEEEEE--CCEEEEEEEEE--CCCCCEEEEEcHH
Confidence 45566666656 678888888 78998885543 5568877777654
Done!