Query 036008
Match_columns 105
No_of_seqs 115 out of 680
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:32:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036008.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036008hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3386 Copper transporter [In 100.0 1.9E-30 4.2E-35 184.4 10.8 92 14-105 12-124 (155)
2 PF04145 Ctr: Ctr copper trans 100.0 1E-30 2.3E-35 180.4 5.1 88 18-105 1-130 (144)
3 PF06800 Sugar_transport: Suga 65.4 28 0.00062 26.9 6.3 63 29-94 91-153 (269)
4 PF06376 DUF1070: Protein of u 55.3 12 0.00027 20.2 1.9 14 85-98 14-27 (34)
5 PF12273 RCR: Chitin synthesis 44.3 24 0.00052 23.8 2.5 21 44-64 5-25 (130)
6 PF07274 DUF1440: Protein of u 39.0 96 0.0021 21.7 4.9 59 2-60 15-77 (135)
7 PRK00924 5-keto-4-deoxyuronate 38.5 34 0.00073 26.7 2.8 39 3-41 184-246 (276)
8 PF06814 Lung_7-TM_R: Lung sev 34.4 2E+02 0.0044 21.7 7.5 27 71-97 110-136 (295)
9 CHL00070 petB cytochrome b6 32.6 68 0.0015 23.9 3.6 61 33-93 78-138 (215)
10 PRK03735 cytochrome b6; Provis 30.5 71 0.0015 24.0 3.4 62 32-93 85-146 (223)
11 PF13571 DUF4133: Domain of un 29.6 54 0.0012 21.7 2.3 37 25-61 4-40 (96)
12 cd00284 Cytochrome_b_N Cytochr 28.8 53 0.0011 24.1 2.4 60 34-93 68-127 (200)
13 PRK00753 psbL photosystem II r 28.5 92 0.002 17.2 2.7 19 41-59 17-35 (39)
14 PF09997 DUF2238: Predicted me 28.1 58 0.0013 22.9 2.4 36 30-65 79-115 (143)
15 COG3477 Predicted periplasmic/ 27.9 1.1E+02 0.0024 22.3 3.8 57 3-59 37-99 (176)
16 CHL00038 psbL photosystem II p 27.8 99 0.0022 17.0 2.8 19 41-59 16-34 (38)
17 PF07444 Ycf66_N: Ycf66 protei 27.3 57 0.0012 21.0 2.1 34 28-61 49-82 (84)
18 PF07219 HemY_N: HemY protein 26.9 94 0.002 20.1 3.1 19 28-46 3-21 (108)
19 PF05283 MGC-24: Multi-glycosy 26.8 82 0.0018 23.1 3.1 26 39-64 159-185 (186)
20 PRK13499 rhamnose-proton sympo 26.5 2.6E+02 0.0057 22.4 6.1 36 29-64 119-157 (345)
21 COG4906 Predicted membrane pro 25.8 2.7E+02 0.0058 24.2 6.2 30 36-65 285-314 (696)
22 PF02419 PsbL: PsbL protein; 24.0 1.3E+02 0.0028 16.5 2.7 19 41-59 15-33 (37)
23 PF07256 DUF1435: Protein of u 23.8 2E+02 0.0044 18.3 5.1 64 37-103 6-78 (78)
24 PF13268 DUF4059: Protein of u 23.6 2E+02 0.0043 18.1 6.1 43 42-84 12-54 (72)
25 PRK13664 hypothetical protein; 23.4 1.7E+02 0.0037 17.7 3.4 26 41-66 5-30 (62)
26 PF13623 SurA_N_2: SurA N-term 22.2 95 0.0021 21.6 2.6 28 36-63 3-30 (145)
27 PF02116 STE2: Fungal pheromon 22.1 1.5E+02 0.0033 23.0 3.9 24 74-98 30-53 (284)
28 PF04995 CcmD: Heme exporter p 21.4 1.6E+02 0.0035 16.3 3.4 24 41-64 4-27 (46)
29 TIGR03434 ADOP Acidobacterial 21.2 4.3E+02 0.0094 22.5 6.8 26 75-100 412-437 (803)
30 KOG2322 N-methyl-D-aspartate r 21.0 2.1E+02 0.0046 21.9 4.4 62 32-102 75-137 (237)
31 PRK02624 psbH photosystem II r 20.9 1.5E+02 0.0032 18.2 2.9 25 32-56 22-46 (64)
32 PF11100 TrbE: Conjugal transf 20.9 2E+02 0.0044 17.7 3.5 23 36-58 28-50 (66)
33 PF05827 ATP-synt_S1: Vacuolar 20.4 1.4E+02 0.0029 22.5 3.3 35 29-63 246-280 (282)
34 PLN00055 photosystem II reacti 20.2 1.6E+02 0.0034 18.6 3.0 27 30-56 32-58 (73)
No 1
>KOG3386 consensus Copper transporter [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.9e-30 Score=184.39 Aligned_cols=92 Identities=36% Similarity=0.622 Sum_probs=82.2
Q ss_pred CCCceeeEEecCcceeEEecCCcCCChhHHHHHHHHHHHHHHHHHHHhhchhc-----c---CC--------C-C----c
Q 036008 14 HNTMTHMTFFWGKNSEILFSGWPGTSPGMYVLALILVFVLAVLVERLSHCKLM-----K---PG--------A-N----H 72 (105)
Q Consensus 14 ~~~~M~M~F~~~~~~~lLF~~W~~~s~~~~~~sci~vf~lav~~E~l~~~r~~-----~---p~--------~-~----~ 72 (105)
.+|+|.|+|||++++++|||+|+++|.++|++||+++|++|+++|+||+.|+. + +. . . .
T Consensus 12 ~~~~m~M~f~~~~~~~iLF~~W~~~s~~~~~ls~i~iflla~l~E~Lk~~r~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 91 (155)
T KOG3386|consen 12 QTMMMMMFFHFKTIETILFSSWHITSAGGMALSCIAIFLLAVLYEALKFGREKLFRWQQLRQPTGHGHEIPLSGPSKLLN 91 (155)
T ss_pred CCCceEEEEecCceeEEEEcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccccCcchhhh
Confidence 47999999999999999999999999999999999999999999999999862 1 10 0 1 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 036008 73 ATAGLIQTLLHAIRVGLAFFVMLAIMSFNAFIL 105 (105)
Q Consensus 73 ~~~~l~~~~l~~~q~~l~Y~LMLvvMTfN~~if 105 (105)
+..|++|+++|.+|.++||+|||++||||+|++
T Consensus 92 ~~~h~~qt~l~~~Q~~~sY~LMLifMtfN~~l~ 124 (155)
T KOG3386|consen 92 SASHLIQTLLYVVQLGFSYLLMLIFMTFNGYLF 124 (155)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 567999999999999999999999999999975
No 2
>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.
Probab=99.96 E-value=1e-30 Score=180.35 Aligned_cols=88 Identities=35% Similarity=0.623 Sum_probs=45.4
Q ss_pred eeeEEecCc-ceeEEecCCcCCChhHHHHHHHHHHHHHHHHHHHhhchhc------cC-----------C----------
Q 036008 18 THMTFFWGK-NSEILFSGWPGTSPGMYVLALILVFVLAVLVERLSHCKLM------KP-----------G---------- 69 (105)
Q Consensus 18 M~M~F~~~~-~~~lLF~~W~~~s~~~~~~sci~vf~lav~~E~l~~~r~~------~p-----------~---------- 69 (105)
|+|+|||++ ++++||++|+++|.++|+++|+++|++|+++|++|.+|.. ++ +
T Consensus 1 M~M~F~~~~~~~~lLF~~W~~~s~~~~~~sci~~f~lav~~e~L~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T PF04145_consen 1 MSMYFHWGTIRDCLLFKSWKPSSAGAYVGSCIGVFLLAVLYEFLKALRRRLERRWARRRSRRASCSSSESRSRSDASSKS 80 (144)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHTTT-------------------------------------
T ss_pred CeeEEEcCCCccEEEeCCcEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCccccccc
Confidence 899999998 8999999999999999999999999999999999999852 00 0
Q ss_pred --------------CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 036008 70 --------------ANHATAGLIQTLLHAIRVGLAFFVMLAIMSFNAFIL 105 (105)
Q Consensus 70 --------------~~~~~~~l~~~~l~~~q~~l~Y~LMLvvMTfN~~if 105 (105)
+..+..|++|+++|++|.++||+|||+|||||+|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~Y~LMLvvMTyN~~l~ 130 (144)
T PF04145_consen 81 SPSPSSTSPRSSRRRWFWSQHLIRALLHFVQVLLGYLLMLVVMTYNVYLF 130 (144)
T ss_dssp ---------------------SHHHHHHHHHHHHHHHHHHHHHHTT--SS
T ss_pred ccccccccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhhheeHHHH
Confidence 002356899999999999999999999999999986
No 3
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=65.36 E-value=28 Score=26.92 Aligned_cols=63 Identities=11% Similarity=0.373 Sum_probs=32.3
Q ss_pred eEEecCCcCCChhHHHHHHHHHHHHHHHHHHHhhchhccCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 036008 29 EILFSGWPGTSPGMYVLALILVFVLAVLVERLSHCKLMKPGANHATAGLIQTLLHAIRVGLAFFVM 94 (105)
Q Consensus 29 ~lLF~~W~~~s~~~~~~sci~vf~lav~~E~l~~~r~~~p~~~~~~~~l~~~~l~~~q~~l~Y~LM 94 (105)
.++|.+|+..+..-+-..-+++.++++. +...++.+.++.....+..+.++..+-.+++|.+-
T Consensus 91 v~~fgEW~~~~~~~~G~~Al~liiiGv~---lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y 153 (269)
T PF06800_consen 91 VLFFGEWTTTTQKIIGFLALVLIIIGVI---LTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIY 153 (269)
T ss_pred HhhcCCCCCcchHHHHHHHHHHHHHHHH---HhccccccccccccccchhhHHHHHHHHHHHHHHH
Confidence 4789999987655433333344444443 33333322221112344555566666667777553
No 4
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=55.29 E-value=12 Score=20.20 Aligned_cols=14 Identities=36% Similarity=0.783 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHH
Q 036008 85 IRVGLAFFVMLAIM 98 (105)
Q Consensus 85 ~q~~l~Y~LMLvvM 98 (105)
+.-+++|+||+++-
T Consensus 14 iDqgiay~Lm~~Al 27 (34)
T PF06376_consen 14 IDQGIAYMLMLVAL 27 (34)
T ss_pred hhHHHHHHHHHHHH
Confidence 34578899998763
No 5
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=44.27 E-value=24 Score=23.79 Aligned_cols=21 Identities=10% Similarity=0.179 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHhhch
Q 036008 44 VLALILVFVLAVLVERLSHCK 64 (105)
Q Consensus 44 ~~sci~vf~lav~~E~l~~~r 64 (105)
++.+|+++++.++.-++..-|
T Consensus 5 ~~iii~~i~l~~~~~~~~~rR 25 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFYCHNRR 25 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444443333333
No 6
>PF07274 DUF1440: Protein of unknown function (DUF1440); InterPro: IPR009898 This family contains a number of bacterial proteins of unknown function approximately 180 residues long. These are possibly integral membrane proteins.
Probab=39.04 E-value=96 Score=21.67 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=29.2
Q ss_pred CCCC-CCCCcCCCCCCceeeEEecCcceeEEecCCcCCC---hhHHHHHHHHHHHHHHHHHHH
Q 036008 2 PPPN-NRGTMMHHHNTMTHMTFFWGKNSEILFSGWPGTS---PGMYVLALILVFVLAVLVERL 60 (105)
Q Consensus 2 ~~~~-~~~~~~~~~~~~M~M~F~~~~~~~lLF~~W~~~s---~~~~~~sci~vf~lav~~E~l 60 (105)
||.. .|+..++.+-+--+....-+++.++.|++=+..- ..++..|.+.-++.+++.|..
T Consensus 15 PPRtp~r~~~nPP~~~L~~lgi~~~t~~~y~~s~~~~~~~~~~vH~~FSi~fa~~Y~~~ae~~ 77 (135)
T PF07274_consen 15 PPRTPERDETNPPQVLLQQLGIPDKTHATYTYSGHEVPWVSFIVHFGFSIVFAVAYCVLAEYW 77 (135)
T ss_pred CCCCCCcCCCCCHHHHHHHcCCCCCCCceEEEcCCeeeeehhhhhHHHHHHHHHHHHHHHHHC
Confidence 4433 3788877765444444433334556665544432 235555544444444444433
No 7
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=38.50 E-value=34 Score=26.70 Aligned_cols=39 Identities=21% Similarity=0.385 Sum_probs=26.2
Q ss_pred CCCCCCCcCCC-CCCceeeEEecCc-----------------------ceeEEecCCcCCChh
Q 036008 3 PPNNRGTMMHH-HNTMTHMTFFWGK-----------------------NSEILFSGWPGTSPG 41 (105)
Q Consensus 3 ~~~~~~~~~~~-~~~~M~M~F~~~~-----------------------~~~lLF~~W~~~s~~ 41 (105)
|.+|-|+|++| |+-.|..+|++.. .+.++-+.|.+++..
T Consensus 184 PGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~pdETrh~~v~n~~aVisP~wsih~g~ 246 (276)
T PRK00924 184 PGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEPQETRHIVVHNEQAVISPSWSIHSGV 246 (276)
T ss_pred CCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCccceeeEEEECCCEEECCCcceecCc
Confidence 66778887777 6655666665542 145778899998743
No 8
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=34.44 E-value=2e+02 Score=21.71 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=20.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHH
Q 036008 71 NHATAGLIQTLLHAIRVGLAFFVMLAI 97 (105)
Q Consensus 71 ~~~~~~l~~~~l~~~q~~l~Y~LMLvv 97 (105)
.+........+++.++-++++++.|++
T Consensus 110 ~~~~~~~~~~i~~~~k~~~~~~lllli 136 (295)
T PF06814_consen 110 PSEGWMIFAYIFSALKRTLSFFLLLLI 136 (295)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888888999988888887765
No 9
>CHL00070 petB cytochrome b6
Probab=32.63 E-value=68 Score=23.95 Aligned_cols=61 Identities=11% Similarity=0.164 Sum_probs=39.3
Q ss_pred cCCcCCChhHHHHHHHHHHHHHHHHHHHhhchhccCCCCcchHHHHHHHHHHHHHHHHHHH
Q 036008 33 SGWPGTSPGMYVLALILVFVLAVLVERLSHCKLMKPGANHATAGLIQTLLHAIRVGLAFFV 93 (105)
Q Consensus 33 ~~W~~~s~~~~~~sci~vf~lav~~E~l~~~r~~~p~~~~~~~~l~~~~l~~~q~~l~Y~L 93 (105)
-+|-+++.-....+.+++.+..=..+++-..+-.+|++..|..-++.-++-....+.||.|
T Consensus 78 ~Gwl~R~~H~~gas~~~~~~~lH~~r~~~~gsYk~pre~~W~~Gv~l~~l~m~~af~GY~L 138 (215)
T CHL00070 78 FGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTVSFGVTGYSL 138 (215)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccCcHHHHHHHHHHHHHHHccccC
Confidence 4677777777777766666665555555555445666666776666666666666667655
No 10
>PRK03735 cytochrome b6; Provisional
Probab=30.47 E-value=71 Score=23.96 Aligned_cols=62 Identities=11% Similarity=0.122 Sum_probs=40.0
Q ss_pred ecCCcCCChhHHHHHHHHHHHHHHHHHHHhhchhccCCCCcchHHHHHHHHHHHHHHHHHHH
Q 036008 32 FSGWPGTSPGMYVLALILVFVLAVLVERLSHCKLMKPGANHATAGLIQTLLHAIRVGLAFFV 93 (105)
Q Consensus 32 F~~W~~~s~~~~~~sci~vf~lav~~E~l~~~r~~~p~~~~~~~~l~~~~l~~~q~~l~Y~L 93 (105)
.-+|-+++.-.+..+++++.+..=..+.+-..+-.+|++..|..-++..++-....+.||.|
T Consensus 85 ~~GwliR~~H~~gas~~~~~~~lH~~r~~~~gsYk~pre~~W~~Gv~l~~l~~~~af~GY~L 146 (223)
T PRK03735 85 AFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRELNWVVGVLIFFVTVGLGFTGYLL 146 (223)
T ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHcCCCCceeHHHHHHHHHHHHHHhccccC
Confidence 44777777777777776666665555555555445566666766666666666666666655
No 11
>PF13571 DUF4133: Domain of unknown function (DUF4133)
Probab=29.63 E-value=54 Score=21.72 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=29.1
Q ss_pred CcceeEEecCCcCCChhHHHHHHHHHHHHHHHHHHHh
Q 036008 25 GKNSEILFSGWPGTSPGMYVLALILVFVLAVLVERLS 61 (105)
Q Consensus 25 ~~~~~lLF~~W~~~s~~~~~~sci~vf~lav~~E~l~ 61 (105)
|.+..+=||+.+.+...-+++++++++++.+..-...
T Consensus 4 GI~~~iEFkGLkaQYl~~faGgll~~~il~~iLYi~G 40 (96)
T PF13571_consen 4 GIGRPIEFKGLKAQYLFYFAGGLLGLFILFVILYIAG 40 (96)
T ss_pred CCCCCceecchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567788999999888899999998888776554433
No 12
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=28.82 E-value=53 Score=24.11 Aligned_cols=60 Identities=17% Similarity=0.203 Sum_probs=35.8
Q ss_pred CCcCCChhHHHHHHHHHHHHHHHHHHHhhchhccCCCCcchHHHHHHHHHHHHHHHHHHH
Q 036008 34 GWPGTSPGMYVLALILVFVLAVLVERLSHCKLMKPGANHATAGLIQTLLHAIRVGLAFFV 93 (105)
Q Consensus 34 ~W~~~s~~~~~~sci~vf~lav~~E~l~~~r~~~p~~~~~~~~l~~~~l~~~q~~l~Y~L 93 (105)
+|-+++.-....+.+++++..=..+.+-..+-.+|++..|..-++..++-......||.|
T Consensus 68 G~liR~~H~~gas~~~~~~~lH~~r~~~~gsY~~pre~~W~~G~~l~~l~~~~af~GY~L 127 (200)
T cd00284 68 GWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKPRELTWVIGVILLLLTMATAFMGYVL 127 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHccccc
Confidence 677777777777766666655555555544434455555655555555555556666654
No 13
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=28.49 E-value=92 Score=17.21 Aligned_cols=19 Identities=42% Similarity=0.653 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 036008 41 GMYVLALILVFVLAVLVER 59 (105)
Q Consensus 41 ~~~~~sci~vf~lav~~E~ 59 (105)
...++.++.+|++|++...
T Consensus 17 TSLy~GlLlifvl~vLFss 35 (39)
T PRK00753 17 TSLYLGLLLVFVLGILFSS 35 (39)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 4678888999999988653
No 14
>PF09997 DUF2238: Predicted membrane protein (DUF2238); InterPro: IPR014509 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins, with several transmembrane segments.
Probab=28.07 E-value=58 Score=22.93 Aligned_cols=36 Identities=17% Similarity=0.432 Sum_probs=27.8
Q ss_pred EEecCCcCCC-hhHHHHHHHHHHHHHHHHHHHhhchh
Q 036008 30 ILFSGWPGTS-PGMYVLALILVFVLAVLVERLSHCKL 65 (105)
Q Consensus 30 lLF~~W~~~s-~~~~~~sci~vf~lav~~E~l~~~r~ 65 (105)
++-+.+..+. .+.+++++.++..+|.+||.+...-.
T Consensus 79 ~l~r~~~~~~~~~~~~l~v~~~laiSa~YEliEw~~a 115 (143)
T PF09997_consen 79 LLIRKWPLRGGGWLFFLAVCVILAISAFYELIEWWAA 115 (143)
T ss_pred HHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666 77899999999999999998876543
No 15
>COG3477 Predicted periplasmic/secreted protein [Function unknown]
Probab=27.91 E-value=1.1e+02 Score=22.29 Aligned_cols=57 Identities=16% Similarity=0.255 Sum_probs=29.1
Q ss_pred CCCC--CCCcCCCCCCceeeEEecC-cceeEEecCCcCCCh---hHHHHHHHHHHHHHHHHHH
Q 036008 3 PPNN--RGTMMHHHNTMTHMTFFWG-KNSEILFSGWPGTSP---GMYVLALILVFVLAVLVER 59 (105)
Q Consensus 3 ~~~~--~~~~~~~~~~~M~M~F~~~-~~~~lLF~~W~~~s~---~~~~~sci~vf~lav~~E~ 59 (105)
||.+ ||..+|..--.-+-.|--+ ++.+..|.+=+..-. .++..|.++-+..+++.|-
T Consensus 37 PPR~per~~~nPP~~~l~qLG~~~~~th~~y~fsg~~~~w~~~i~H~~FSiVFa~iYcvl~~~ 99 (176)
T COG3477 37 PPRTPERNETNPPQIFLQQLGLPGDPTHATYTFSGMVFPWVGFIVHFSFSIVFAVIYCVLAEK 99 (176)
T ss_pred CCCCcccccCCChHHHHHHcCCCCCCcceeEEEcCeEeeeEEeeehhhHHHHHHHHHHHHHhh
Confidence 4555 8887777544434344333 345555554333322 2455555555555555553
No 16
>CHL00038 psbL photosystem II protein L
Probab=27.76 E-value=99 Score=17.00 Aligned_cols=19 Identities=42% Similarity=0.613 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 036008 41 GMYVLALILVFVLAVLVER 59 (105)
Q Consensus 41 ~~~~~sci~vf~lav~~E~ 59 (105)
...+++++.||++|++...
T Consensus 16 TSLy~GLLlifvl~vlfss 34 (38)
T CHL00038 16 TSLYWGLLLIFVLAVLFSN 34 (38)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4677888999999988653
No 17
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=27.34 E-value=57 Score=20.99 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=21.5
Q ss_pred eeEEecCCcCCChhHHHHHHHHHHHHHHHHHHHh
Q 036008 28 SEILFSGWPGTSPGMYVLALILVFVLAVLVERLS 61 (105)
Q Consensus 28 ~~lLF~~W~~~s~~~~~~sci~vf~lav~~E~l~ 61 (105)
..++|.+|..+..-.+--.+....++.+..|.+|
T Consensus 49 ~IL~~~gwRldp~ll~~Q~l~~~~~i~f~~e~ir 82 (84)
T PF07444_consen 49 LILWFQGWRLDPILLFGQMLLVGLLIFFGWETIR 82 (84)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466777887766555555555666666666665
No 18
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=26.92 E-value=94 Score=20.14 Aligned_cols=19 Identities=16% Similarity=0.108 Sum_probs=13.6
Q ss_pred eeEEecCCcCCChhHHHHH
Q 036008 28 SEILFSGWPGTSPGMYVLA 46 (105)
Q Consensus 28 ~~lLF~~W~~~s~~~~~~s 46 (105)
+.|-+.+|.++++.-.++.
T Consensus 3 V~I~~~~~~ie~sl~~~~~ 21 (108)
T PF07219_consen 3 VLISWGGYRIETSLWVALI 21 (108)
T ss_pred EEEEECCEEEEeeHHHHHH
Confidence 4577899999987654443
No 19
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=26.84 E-value=82 Score=23.14 Aligned_cols=26 Identities=23% Similarity=0.520 Sum_probs=18.2
Q ss_pred ChhHHHHHHHHHH-HHHHHHHHHhhch
Q 036008 39 SPGMYVLALILVF-VLAVLVERLSHCK 64 (105)
Q Consensus 39 s~~~~~~sci~vf-~lav~~E~l~~~r 64 (105)
+.+.|++..|.++ ++||++-.+|++|
T Consensus 159 D~~SFiGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 159 DAASFIGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred chhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 3567777765544 6788888888776
No 20
>PRK13499 rhamnose-proton symporter; Provisional
Probab=26.53 E-value=2.6e+02 Score=22.38 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=26.2
Q ss_pred eEEecCCc---CCChhHHHHHHHHHHHHHHHHHHHhhch
Q 036008 29 EILFSGWP---GTSPGMYVLALILVFVLAVLVERLSHCK 64 (105)
Q Consensus 29 ~lLF~~W~---~~s~~~~~~sci~vf~lav~~E~l~~~r 64 (105)
.++|.+|+ .++.+...+.-+++.++++..-+....+
T Consensus 119 ~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~ 157 (345)
T PRK13499 119 PIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQL 157 (345)
T ss_pred HHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 46688999 7788877777777777777777764443
No 21
>COG4906 Predicted membrane protein [Function unknown]
Probab=25.81 E-value=2.7e+02 Score=24.24 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=26.4
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHhhchh
Q 036008 36 PGTSPGMYVLALILVFVLAVLVERLSHCKL 65 (105)
Q Consensus 36 ~~~s~~~~~~sci~vf~lav~~E~l~~~r~ 65 (105)
-.++.+++.-.+..+|..++.+|.+..+|.
T Consensus 285 l~n~~~~flsvl~Fif~f~F~~e~lalaRq 314 (696)
T COG4906 285 LKNSDYGFLSVLLFIFQFSFIYEILALARQ 314 (696)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999885
No 22
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=23.98 E-value=1.3e+02 Score=16.50 Aligned_cols=19 Identities=42% Similarity=0.604 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 036008 41 GMYVLALILVFVLAVLVER 59 (105)
Q Consensus 41 ~~~~~sci~vf~lav~~E~ 59 (105)
...++.++.||+++++...
T Consensus 15 TSLY~GLllifvl~vLFss 33 (37)
T PF02419_consen 15 TSLYWGLLLIFVLAVLFSS 33 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhhh
Confidence 3567888899999988653
No 23
>PF07256 DUF1435: Protein of unknown function (DUF1435); InterPro: IPR009885 This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.
Probab=23.84 E-value=2e+02 Score=18.28 Aligned_cols=64 Identities=20% Similarity=0.044 Sum_probs=36.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHhhchhc------cCCC---CcchHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 036008 37 GTSPGMYVLALILVFVLAVLVERLSHCKLM------KPGA---NHATAGLIQTLLHAIRVGLAFFVMLAIMSFNAF 103 (105)
Q Consensus 37 ~~s~~~~~~sci~vf~lav~~E~l~~~r~~------~p~~---~~~~~~l~~~~l~~~q~~l~Y~LMLvvMTfN~~ 103 (105)
.+|.|+-.+-|..+..++...-++..+|-+ ..-- +++.+|++ +==.-+.+.+-+|.+.|++|.|
T Consensus 6 l~SgWGvllp~~l~~~l~~~~ls~~~~r~~iv~amL~T~~MLfh~rlRH~l---LLPSc~AL~~gl~ai~~~~~~g 78 (78)
T PF07256_consen 6 LGSGWGVLLPGALIPLLALANLSFDQWRIVIVVAMLLTLAMLFHRRLRHFL---LLPSCVALAGGLMAISMNLNLG 78 (78)
T ss_pred cccchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhHhhhHHH---HHHHHHHHHHHHHHHHHhhhcC
Confidence 456677777777777777766555555531 0000 01112221 1122256788899999999975
No 24
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=23.56 E-value=2e+02 Score=18.06 Aligned_cols=43 Identities=21% Similarity=0.134 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhccCCCCcchHHHHHHHHHH
Q 036008 42 MYVLALILVFVLAVLVERLSHCKLMKPGANHATAGLIQTLLHA 84 (105)
Q Consensus 42 ~~~~sci~vf~lav~~E~l~~~r~~~p~~~~~~~~l~~~~l~~ 84 (105)
+...|.+.+.+.+.+.-+.|+.|........+..++.+.++-.
T Consensus 12 gL~ls~i~V~~~~~~wi~~Ra~~~~DKT~~eRQa~LyD~lmi~ 54 (72)
T PF13268_consen 12 GLLLSSILVLLVSGIWILWRALRKKDKTAKERQAFLYDMLMIA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 4566777888888888888877754222223445555554443
No 25
>PRK13664 hypothetical protein; Provisional
Probab=23.42 E-value=1.7e+02 Score=17.73 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhchhc
Q 036008 41 GMYVLALILVFVLAVLVERLSHCKLM 66 (105)
Q Consensus 41 ~~~~~sci~vf~lav~~E~l~~~r~~ 66 (105)
..|-..++.+++++++..++|.++++
T Consensus 5 adyWWilill~lvG~i~N~iK~l~Rv 30 (62)
T PRK13664 5 AKYWWILVLVFLVGVLLNVIKDLKRV 30 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777889999999999999998874
No 26
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=22.18 E-value=95 Score=21.61 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=22.5
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHhhc
Q 036008 36 PGTSPGMYVLALILVFVLAVLVERLSHC 63 (105)
Q Consensus 36 ~~~s~~~~~~sci~vf~lav~~E~l~~~ 63 (105)
++++.+.++...|++.++|++.+.+...
T Consensus 3 kIR~r~~lLi~vIglAL~aFIv~d~~~~ 30 (145)
T PF13623_consen 3 KIRQRGGLLIIVIGLALFAFIVGDFRSG 30 (145)
T ss_pred hHhhcchHHHHHHHHHHHHHHHHHHhcc
Confidence 3567788889999999999999877543
No 27
>PF02116 STE2: Fungal pheromone mating factor STE2 GPCR; InterPro: IPR000366 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures.; GO: 0004932 mating-type factor pheromone receptor activity, 0016020 membrane; PDB: 2K9P_A.
Probab=22.09 E-value=1.5e+02 Score=23.03 Aligned_cols=24 Identities=8% Similarity=0.364 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 036008 74 TAGLIQTLLHAIRVGLAFFVMLAIM 98 (105)
Q Consensus 74 ~~~l~~~~l~~~q~~l~Y~LMLvvM 98 (105)
...+-.++.|+.|.+.+ ++||+++
T Consensus 30 ~~~~~~~I~yg~qiGA~-~~llivL 53 (284)
T PF02116_consen 30 NYNVRTAINYGVQIGAC-LLLLIVL 53 (284)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 34677799999999999 6777665
No 28
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=21.41 E-value=1.6e+02 Score=16.26 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhch
Q 036008 41 GMYVLALILVFVLAVLVERLSHCK 64 (105)
Q Consensus 41 ~~~~~sci~vf~lav~~E~l~~~r 64 (105)
+.|++++.++.+++++.+.+...+
T Consensus 4 ~~yVW~sYg~t~~~l~~l~~~~~~ 27 (46)
T PF04995_consen 4 GFYVWSSYGVTALVLAGLIVWSLR 27 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888776554
No 29
>TIGR03434 ADOP Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.
Probab=21.22 E-value=4.3e+02 Score=22.55 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036008 75 AGLIQTLLHAIRVGLAFFVMLAIMSF 100 (105)
Q Consensus 75 ~~l~~~~l~~~q~~l~Y~LMLvvMTf 100 (105)
++..|+++-.+|++++.+++..+.+.
T Consensus 412 ~~~~r~~l~~~qi~ia~~lli~~~~~ 437 (803)
T TIGR03434 412 RHRLRSALVVAQVALSLVLLVGAGLL 437 (803)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 56678888899999998887766554
No 30
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=20.97 E-value=2.1e+02 Score=21.92 Aligned_cols=62 Identities=24% Similarity=0.351 Sum_probs=35.6
Q ss_pred ecCCcCCChhHHHHHHHHHHHHHHHHH-HHhhchhccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 036008 32 FSGWPGTSPGMYVLALILVFVLAVLVE-RLSHCKLMKPGANHATAGLIQTLLHAIRVGLAFFVMLAIMSFNA 102 (105)
Q Consensus 32 F~~W~~~s~~~~~~sci~vf~lav~~E-~l~~~r~~~p~~~~~~~~l~~~~l~~~q~~l~Y~LMLvvMTfN~ 102 (105)
++.|.-++++.| ..|+++|++..+.- +....|+..|. . ..++-.+....+|.++++.=.||+
T Consensus 75 ~~~~v~~~~~~~-~~~~~vf~vt~l~l~c~~~~r~k~P~-----N---~ilL~iFT~a~s~~~g~~~a~~~~ 137 (237)
T KOG2322|consen 75 VQDFVRRNPALY-WALIVVFIVTYLSLACCEGLRRKSPV-----N---LILLGIFTLAEAFMTGLVTAFYDA 137 (237)
T ss_pred HHHHHHhCcHHH-HHHHHHHHHHHHHHHccCcccccCcH-----H---HhHHHHHHHHHHHHHHHHHHHHhh
Confidence 356788888888 66666666554432 22222311111 1 234444667788888888877764
No 31
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=20.94 E-value=1.5e+02 Score=18.17 Aligned_cols=25 Identities=36% Similarity=0.652 Sum_probs=18.8
Q ss_pred ecCCcCCChhHHHHHHHHHHHHHHH
Q 036008 32 FSGWPGTSPGMYVLALILVFVLAVL 56 (105)
Q Consensus 32 F~~W~~~s~~~~~~sci~vf~lav~ 56 (105)
-++|-++-.-+.+.+++++|++-++
T Consensus 22 aPGWGTTplMgv~m~Lf~vFl~iiL 46 (64)
T PRK02624 22 VPGWGTTPVMAVFMVLFLVFLLIIL 46 (64)
T ss_pred cCCccchHHHHHHHHHHHHHHHHHH
Confidence 4889888877888888877766543
No 32
>PF11100 TrbE: Conjugal transfer protein TrbE ; InterPro: IPR020150 TrbE is encoded by the F-plasmid and is located between traN and traF. The product of trbE is a small, integral, inner membrane protein. Mutation of trbE by insertional mutagenesis suggests that TrbE is not essential for F transfer from Escherichia coli (strain K12) under standard mating conditions [].
Probab=20.86 E-value=2e+02 Score=17.68 Aligned_cols=23 Identities=9% Similarity=0.150 Sum_probs=17.3
Q ss_pred cCCChhHHHHHHHHHHHHHHHHH
Q 036008 36 PGTSPGMYVLALILVFVLAVLVE 58 (105)
Q Consensus 36 ~~~s~~~~~~sci~vf~lav~~E 58 (105)
+.+|.+++..|+++++.-+...-
T Consensus 28 k~Tt~~d~l~a~~~I~~~g~~~~ 50 (66)
T PF11100_consen 28 KETTASDILEAVFFILASGFMLF 50 (66)
T ss_pred cccchhhHHHHHHHHHHHHHHHH
Confidence 45678899999998887666543
No 33
>PF05827 ATP-synt_S1: Vacuolar ATP synthase subunit S1 (ATP6S1); InterPro: IPR024722 This family consists of metazoan vacuolar ATP synthase subunit S1 proteins [] and fungal proteins belonging to the BIG family. In Candida albicans BIG is required for normal beta-1,6-glucan synthesis, hyphal morphogenesis, adhesion and virulence [].
Probab=20.42 E-value=1.4e+02 Score=22.54 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=30.6
Q ss_pred eEEecCCcCCChhHHHHHHHHHHHHHHHHHHHhhc
Q 036008 29 EILFSGWPGTSPGMYVLALILVFVLAVLVERLSHC 63 (105)
Q Consensus 29 ~lLF~~W~~~s~~~~~~sci~vf~lav~~E~l~~~ 63 (105)
.++|..-+.=|+|-+.+..+.++++++++-++..+
T Consensus 246 ~~lf~~yQFftpgi~mglii~~~ll~IL~~gl~~l 280 (282)
T PF05827_consen 246 DILFFDYQFFTPGIWMGLIISLVLLSILYVGLSML 280 (282)
T ss_pred cceehhheeeeccHHHHHHHHHHHHHHHHHHHHHh
Confidence 35888888889999999999999999999998764
No 34
>PLN00055 photosystem II reaction center protein H; Provisional
Probab=20.22 E-value=1.6e+02 Score=18.57 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=19.7
Q ss_pred EEecCCcCCChhHHHHHHHHHHHHHHH
Q 036008 30 ILFSGWPGTSPGMYVLALILVFVLAVL 56 (105)
Q Consensus 30 lLF~~W~~~s~~~~~~sci~vf~lav~ 56 (105)
-.-++|-++-.-+.+.+++++|++-++
T Consensus 32 kvapgWGTtp~Mg~~m~lf~vfl~iil 58 (73)
T PLN00055 32 KVAPGWGTTPLMGVAMALFAVFLSIIL 58 (73)
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHH
Confidence 345789888777888888887766544
Done!