Query 036008
Match_columns 105
No_of_seqs 115 out of 680
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 14:19:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ls3_A High affinity copper up 99.0 9.6E-14 3.3E-18 72.7 0.0 28 75-102 1-28 (29)
2 2ls2_A High affinity copper up 97.5 1.5E-07 5.2E-12 47.7 0.0 25 38-62 2-26 (26)
3 3cx5_C Cytochrome B-C1 complex 31.9 37 0.0013 26.5 3.3 61 34-94 75-135 (385)
4 3arc_L Photosystem II reaction 27.9 71 0.0024 16.7 3.1 20 40-59 14-33 (37)
5 1vf5_A Cytochrome B6; photosyn 26.7 37 0.0013 24.4 2.3 61 33-93 78-138 (215)
6 2qjy_A Cytochrome B; cytochrom 26.5 42 0.0014 26.7 2.8 60 34-93 90-149 (445)
7 2k9p_A Pheromone alpha factor 19.2 1.6E+02 0.0056 17.7 3.9 22 75-96 17-38 (80)
8 3arc_H Photosystem II reaction 14.6 1.2E+02 0.004 17.8 2.3 25 32-56 21-45 (65)
9 4gvb_B VP12.5, KP6 killer toxi 11.0 1.6E+02 0.0054 17.4 2.1 21 28-48 45-65 (81)
10 2o7a_A Lysozyme; protein foldi 9.1 76 0.0026 20.6 0.2 12 93-104 39-50 (124)
No 1
>2ls3_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=99.02 E-value=9.6e-14 Score=72.69 Aligned_cols=28 Identities=43% Similarity=0.802 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 036008 75 AGLIQTLLHAIRVGLAFFVMLAIMSFNA 102 (105)
Q Consensus 75 ~~l~~~~l~~~q~~l~Y~LMLvvMTfN~ 102 (105)
+|++|+++|++|.++||+|||++||||+
T Consensus 1 ~h~~ra~l~~~q~~~~Y~LML~~MtyN~ 28 (29)
T 2ls3_A 1 KHLLQTVLHIIQVVISYFLMLIFMTYNK 28 (29)
Confidence 4789999999999999999999999997
No 2
>2ls2_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=97.54 E-value=1.5e-07 Score=47.75 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhh
Q 036008 38 TSPGMYVLALILVFVLAVLVERLSH 62 (105)
Q Consensus 38 ~s~~~~~~sci~vf~lav~~E~l~~ 62 (105)
+|.+++++||+++|+++++||++|.
T Consensus 2 ~s~~~~v~Sci~ifll~~~YE~Lk~ 26 (26)
T 2ls2_A 2 NTAGEMAGAFVAVFLLAMFYEGLKX 26 (26)
Confidence 5788999999999999999999983
No 3
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=31.93 E-value=37 Score=26.49 Aligned_cols=61 Identities=11% Similarity=0.112 Sum_probs=43.8
Q ss_pred CCcCCChhHHHHHHHHHHHHHHHHHHHhhchhccCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 036008 34 GWPGTSPGMYVLALILVFVLAVLVERLSHCKLMKPGANHATAGLIQTLLHAIRVGLAFFVM 94 (105)
Q Consensus 34 ~W~~~s~~~~~~sci~vf~lav~~E~l~~~r~~~p~~~~~~~~l~~~~l~~~q~~l~Y~LM 94 (105)
+|-+++......+.+++++..=..+++.+.+-.+|++..|....+.-++-....+.||.|=
T Consensus 75 GwliR~~H~~gAs~ffi~iylHi~Rglyygsy~~Pr~~~W~~Gv~l~ll~m~~aF~GYvLP 135 (385)
T 3cx5_C 75 GYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCV 135 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeeecHHHHHHHHHHHHHhhhcc
Confidence 6777777777777777777777777776655556666567777777777777888888774
No 4
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=27.85 E-value=71 Score=16.67 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 036008 40 PGMYVLALILVFVLAVLVER 59 (105)
Q Consensus 40 ~~~~~~sci~vf~lav~~E~ 59 (105)
-...++.++.+|++|++...
T Consensus 14 RTSLy~GLLlifvlavlFss 33 (37)
T 3arc_L 14 RTSLYLGLLLILVLALLFSS 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhh
Confidence 45778888999999988653
No 5
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A* 2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Probab=26.66 E-value=37 Score=24.40 Aligned_cols=61 Identities=11% Similarity=0.158 Sum_probs=36.8
Q ss_pred cCCcCCChhHHHHHHHHHHHHHHHHHHHhhchhccCCCCcchHHHHHHHHHHHHHHHHHHH
Q 036008 33 SGWPGTSPGMYVLALILVFVLAVLVERLSHCKLMKPGANHATAGLIQTLLHAIRVGLAFFV 93 (105)
Q Consensus 33 ~~W~~~s~~~~~~sci~vf~lav~~E~l~~~r~~~p~~~~~~~~l~~~~l~~~q~~l~Y~L 93 (105)
-+|-+++.-....+.+++++..=..+++.+.+-.+|++..|...++.-++-....+.||.|
T Consensus 78 ~GwliR~~H~~gAs~ffi~~ylHi~Rglyygsy~~p~~~~W~~Gv~l~~l~m~~aF~GYvL 138 (215)
T 1vf5_A 78 FGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWISGVILAVITVSFGVTGYSL 138 (215)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSCSHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cchhhccchHHHHHHHHHHHHHHHHHHHHhhhcccCCCceeHhHHHHHHHHHHHHHccccc
Confidence 3566666666666766666666666666554444555545666665556666666666654
No 6
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=26.49 E-value=42 Score=26.71 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=41.5
Q ss_pred CCcCCChhHHHHHHHHHHHHHHHHHHHhhchhccCCCCcchHHHHHHHHHHHHHHHHHHH
Q 036008 34 GWPGTSPGMYVLALILVFVLAVLVERLSHCKLMKPGANHATAGLIQTLLHAIRVGLAFFV 93 (105)
Q Consensus 34 ~W~~~s~~~~~~sci~vf~lav~~E~l~~~r~~~p~~~~~~~~l~~~~l~~~q~~l~Y~L 93 (105)
+|-+++......+.+++++..=..+++.+.+-.+|++..|...++.-++-....++||.|
T Consensus 90 GwliR~~H~~gAs~ffi~iylHi~RglyygsY~~Pr~~~W~~Gv~l~ll~m~taF~GYvL 149 (445)
T 2qjy_A 90 GFMLRYLHANGASLFFIAVYLHIFRGLYYGSYKAPREVTWIVGMLIYLAMMATAFMGYVL 149 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccceeeehHHHHHHHHHHHHHheec
Confidence 566666667777777777776667777665555566556666666667777777788876
No 7
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=19.23 E-value=1.6e+02 Score=17.70 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036008 75 AGLIQTLLHAIRVGLAFFVMLA 96 (105)
Q Consensus 75 ~~l~~~~l~~~q~~l~Y~LMLv 96 (105)
..+-.++.|++|.+-+-++.++
T Consensus 17 ~~~~~~I~~G~~iGAs~lllii 38 (80)
T 2k9p_A 17 STVTQAILFGVRSGAAALTLIV 38 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677799999999987766543
No 8
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=14.57 E-value=1.2e+02 Score=17.85 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=16.9
Q ss_pred ecCCcCCChhHHHHHHHHHHHHHHH
Q 036008 32 FSGWPGTSPGMYVLALILVFVLAVL 56 (105)
Q Consensus 32 F~~W~~~s~~~~~~sci~vf~lav~ 56 (105)
-++|-++-.-+.+.+++++|++-++
T Consensus 21 aPGWGTtplMgv~m~Lf~vFl~iiL 45 (65)
T 3arc_H 21 APGWGTTPLMAVFMGLFLVFLLIIL 45 (65)
T ss_dssp BSTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccChhHHHHHHHHHHHHHHHHH
Confidence 4688777666777777777665443
No 9
>4gvb_B VP12.5, KP6 killer toxin subunit beta; antifungal protein, secreted; 1.80A {Ustilago maydis virus P6}
Probab=11.03 E-value=1.6e+02 Score=17.36 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=16.2
Q ss_pred eeEEecCCcCCChhHHHHHHH
Q 036008 28 SEILFSGWPGTSPGMYVLALI 48 (105)
Q Consensus 28 ~~lLF~~W~~~s~~~~~~sci 48 (105)
-|--=-+|..-+.|+|+-+|+
T Consensus 45 fcrakyswdlftsgqfyqacl 65 (81)
T 4gvb_B 45 FCRAKYSWDLFTSGQFYQACL 65 (81)
T ss_dssp CEECSSTTSCCCHHHHHHHHH
T ss_pred cEeeeechhhccccHHHHHHH
Confidence 343445899999999999886
No 10
>2o7a_A Lysozyme; protein folding, protein stability, circular permutant, hydrolase; HET: SME; 0.84A {Enterobacteria phage T4}
Probab=9.05 E-value=76 Score=20.59 Aligned_cols=12 Identities=25% Similarity=0.063 Sum_probs=8.4
Q ss_pred HHHHHHhhcccc
Q 036008 93 VMLAIMSFNAFI 104 (105)
Q Consensus 93 LMLvvMTfN~~i 104 (105)
--|+-|+||.|.
T Consensus 39 ~ALvsfaFNlG~ 50 (124)
T 2o7a_A 39 AALINMVFQMGE 50 (124)
T ss_dssp HHHHHHHHHHCH
T ss_pred HHHHHHHHHcCc
Confidence 346788888763
Done!