Query 036008
Match_columns 105
No_of_seqs 115 out of 680
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 14:19:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036008.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036008hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 34.2 24 0.0018 17.1 3.1 20 40-59 14-33 (37)
2 d1ywka1 b.82.1.13 (A:1001-1260 32.2 26 0.0019 24.3 4.1 39 2-40 183-245 (260)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 24.2 18 0.0013 16.7 1.4 11 47-57 13-23 (30)
4 d3cx5c2 f.21.1.2 (C:1-261) Mit 21.1 38 0.0028 23.1 3.3 60 34-93 75-134 (261)
5 d1q90b_ f.21.1.2 (B:) Cytochro 18.7 38 0.0028 22.4 2.8 60 34-93 76-135 (212)
6 d2axth1 f.23.33.1 (H:2-65) Pho 16.2 47 0.0034 18.0 2.3 25 32-56 21-45 (64)
7 d1xrua1 b.82.1.13 (A:1-277) 5- 15.2 32 0.0023 24.0 1.7 38 3-40 186-247 (277)
8 d1ppjc2 f.21.1.2 (C:15-260) Mi 9.0 91 0.0066 20.7 2.4 58 34-93 62-119 (246)
9 d1swya_ d.2.1.3 (A:) Phage T4 6.3 61 0.0045 19.7 0.3 11 93-103 97-107 (164)
10 d1xjua_ d.2.1.3 (A:) Endolysin 6.2 59 0.0043 19.6 0.2 11 94-104 80-90 (158)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=34.23 E-value=24 Score=17.14 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 036008 40 PGMYVLALILVFVLAVLVER 59 (105)
Q Consensus 40 ~~~~~~sci~vf~lav~~E~ 59 (105)
....++.++.+|++|++...
T Consensus 14 rtsLy~GlLlifvl~vLFss 33 (37)
T d2axtl1 14 RTSLYLGLLLILVLALLFSS 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 45678888999999988754
No 2
>d1ywka1 b.82.1.13 (A:1001-1260) 5-keto-4-deoxyuronate isomerase KduI {Enterococcus faecalis [TaxId: 1351]}
Probab=32.20 E-value=26 Score=24.30 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=21.7
Q ss_pred CCCCCCCCcCCC-CCCceeeEEecCc-----------------------ceeEEecCCcCCCh
Q 036008 2 PPPNNRGTMMHH-HNTMTHMTFFWGK-----------------------NSEILFSGWPGTSP 40 (105)
Q Consensus 2 ~~~~~~~~~~~~-~~~~M~M~F~~~~-----------------------~~~lLF~~W~~~s~ 40 (105)
-|.+|-|+|++| ||-.|.-+++++. .+.++-++|.+++.
T Consensus 183 ~pGg~WsS~PpH~HDRrmE~YyYFdl~e~~~V~H~mGep~eTrhivv~n~qaVisP~wsiHsg 245 (260)
T d1ywka1 183 EPGSAWNTMPCHTHERRMEAYVYFDMEEDTRIFHMMGKPDETKHLVMSNEQAAISPSWSIHSG 245 (260)
T ss_dssp CTTCCCCC--------CEEEEEEESCCTTCCEEEEESSTTSCEEEEECTTEEEEECTTSCCCE
T ss_pred cCCCccCCcCCcccCCCCceEEEEEcCCCceEEEeeCCCCceEEEEEECCcEEEcCCccccCC
Confidence 366778888776 7767777776652 13467788888864
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=24.17 E-value=18 Score=16.68 Aligned_cols=11 Identities=27% Similarity=0.730 Sum_probs=6.5
Q ss_pred HHHHHHHHHHH
Q 036008 47 LILVFVLAVLV 57 (105)
Q Consensus 47 ci~vf~lav~~ 57 (105)
.+++|++|++.
T Consensus 13 ~i~lfffaiff 23 (30)
T d2axtt1 13 IIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 35566666653
No 4
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.13 E-value=38 Score=23.13 Aligned_cols=60 Identities=12% Similarity=0.105 Sum_probs=34.1
Q ss_pred CCcCCChhHHHHHHHHHHHHHHHHHHHhhchhccCCCCcchHHHHHHHHHHHHHHHHHHH
Q 036008 34 GWPGTSPGMYVLALILVFVLAVLVERLSHCKLMKPGANHATAGLIQTLLHAIRVGLAFFV 93 (105)
Q Consensus 34 ~W~~~s~~~~~~sci~vf~lav~~E~l~~~r~~~p~~~~~~~~l~~~~l~~~q~~l~Y~L 93 (105)
+|-+++.-.+..+.+++++..=..+.+-...-.+|++..|...++.-++-......||.|
T Consensus 75 Gw~iR~~H~~ga~~~~~~~~lH~~r~~~~gsy~~pre~~W~~Gv~l~~l~~~~af~GY~L 134 (261)
T d3cx5c2 75 GYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCC 134 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhcccccHHHHHHHHHHHHHHHHHhccccCccchhHHhhHHHHHHHHHHHHhhhhc
Confidence 455555556666665555554444444443333454444666666666666667777766
No 5
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=18.66 E-value=38 Score=22.44 Aligned_cols=60 Identities=10% Similarity=0.148 Sum_probs=30.9
Q ss_pred CCcCCChhHHHHHHHHHHHHHHHHHHHhhchhccCCCCcchHHHHHHHHHHHHHHHHHHH
Q 036008 34 GWPGTSPGMYVLALILVFVLAVLVERLSHCKLMKPGANHATAGLIQTLLHAIRVGLAFFV 93 (105)
Q Consensus 34 ~W~~~s~~~~~~sci~vf~lav~~E~l~~~r~~~p~~~~~~~~l~~~~l~~~q~~l~Y~L 93 (105)
+|-+++.-.+..+..++++..=..+.+-..+-.+|++..|..-++.-++-......||.|
T Consensus 76 G~liR~lH~~gAs~~~~~~~lHm~r~~~~gsyk~pre~~W~~Gv~l~~l~m~~aftGY~L 135 (212)
T d1q90b_ 76 GWLIRSIHRWSASMMVLMMVLHVFRVYLTGGFKRPRELTWVTGVIMAVCTVSFGVTGYSL 135 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhcccccccchHHHHHHHHHHHHHHHcCcccCcccceehHhHHHHHHHHHHHHhhhhc
Confidence 455555555555555554444444433333333454444555555555555666667765
No 6
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.21 E-value=47 Score=18.05 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=17.2
Q ss_pred ecCCcCCChhHHHHHHHHHHHHHHH
Q 036008 32 FSGWPGTSPGMYVLALILVFVLAVL 56 (105)
Q Consensus 32 F~~W~~~s~~~~~~sci~vf~lav~ 56 (105)
-++|-++-.-+.+.+++++|++-++
T Consensus 21 aPGWGTTplMgv~m~Lf~vfl~iiL 45 (64)
T d2axth1 21 APGWGTTPLMAVFMGLFLVFLLIIL 45 (64)
T ss_dssp CSTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHHHHHHHH
Confidence 4678877767777777777665443
No 7
>d1xrua1 b.82.1.13 (A:1-277) 5-keto-4-deoxyuronate isomerase KduI {Escherichia coli [TaxId: 562]}
Probab=15.22 E-value=32 Score=23.99 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=24.6
Q ss_pred CCCCCCCcCCC-CCCceeeEEecCc-----------------------ceeEEecCCcCCCh
Q 036008 3 PPNNRGTMMHH-HNTMTHMTFFWGK-----------------------NSEILFSGWPGTSP 40 (105)
Q Consensus 3 ~~~~~~~~~~~-~~~~M~M~F~~~~-----------------------~~~lLF~~W~~~s~ 40 (105)
|.+|-|+|++| |+-.|.-+++++. ++.++-++|++++.
T Consensus 186 PGg~WSSyPpHkHDRrmEeyyYF~l~~~~~Vfh~mGep~etrhivv~neqaVisP~wsih~g 247 (277)
T d1xrua1 186 PGNLWNTMPCHTHERRMEVYFYFNMDDDACVFHMMGQPQETRHIVMHNEQAVISPSWSIHSG 247 (277)
T ss_dssp TTCCEESCSEEECTTEEEEEEEESCCTTCCEEEEEEETTEEEEEEECSSEEEEECTTCEEEE
T ss_pred CCCccCCCCCccCCCCcceEEEEEcCCCceEEEecCCCCceeEEEEECCcEEECCCCcccCC
Confidence 55666777666 6666666666652 23467788888763
No 8
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.96 E-value=91 Score=20.75 Aligned_cols=58 Identities=10% Similarity=0.048 Sum_probs=27.7
Q ss_pred CCcCCChhHHHHHHHHHHHHHHHHHHHhhchhccCCCCcchHHHHHHHHHHHHHHHHHHH
Q 036008 34 GWPGTSPGMYVLALILVFVLAVLVERLSHCKLMKPGANHATAGLIQTLLHAIRVGLAFFV 93 (105)
Q Consensus 34 ~W~~~s~~~~~~sci~vf~lav~~E~l~~~r~~~p~~~~~~~~l~~~~l~~~q~~l~Y~L 93 (105)
+|-+++.-....+++.+.+.-=..+.+-...-.+|+ .|..-.+.-++-....++||.|
T Consensus 62 G~~iR~~H~~gas~~~~~~~lHm~r~~~~~sy~~~~--~w~~G~~l~~l~m~~af~GY~L 119 (246)
T d1ppjc2 62 GWIIRYMHANGASMFFICLYMHVGRGLYYGSYTFLE--TWNIGVILLLTVMATAFMGYVL 119 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSHH--HHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhcchhHhHHHHHHHHHHHHHHHHHHhcCccchH--HHHHHHHHHHHHHHHHHeeccC
Confidence 455555555555554444443333433332222333 2444455555555566667765
No 9
>d1swya_ d.2.1.3 (A:) Phage T4 lysozyme {Bacteriophage T4 [TaxId: 10665]}
Probab=6.32 E-value=61 Score=19.66 Aligned_cols=11 Identities=27% Similarity=0.147 Sum_probs=9.1
Q ss_pred HHHHHHhhccc
Q 036008 93 VMLAIMSFNAF 103 (105)
Q Consensus 93 LMLvvMTfN~~ 103 (105)
--|+-|+||.|
T Consensus 97 ~alvs~~fNlG 107 (164)
T d1swya_ 97 CALINMVFQMG 107 (164)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHeechhhcC
Confidence 37899999987
No 10
>d1xjua_ d.2.1.3 (A:) Endolysin Lyz {Bacteriophage P1 [TaxId: 10678]}
Probab=6.20 E-value=59 Score=19.62 Aligned_cols=11 Identities=18% Similarity=0.157 Sum_probs=8.0
Q ss_pred HHHHHhhcccc
Q 036008 94 MLAIMSFNAFI 104 (105)
Q Consensus 94 MLvvMTfN~~i 104 (105)
-|+-|+||.|.
T Consensus 80 alvs~~fN~G~ 90 (158)
T d1xjua_ 80 AMTSAAFNMGC 90 (158)
T ss_dssp HHHHHHHHHCH
T ss_pred HHHHHhhccCc
Confidence 46788888773
Done!