BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036009
(318 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 2 ESSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPE 61
ES L +KV+ G DL + F YV +S+ D + L Q T T K+ NP+
Sbjct: 19 ESRILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQ---TKTIKKT-LNPK 74
Query: 62 WNHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLISE 112
WN F + + H + FE+ E + D +G+V VP+ L +E
Sbjct: 75 WNEEFYFRV-----NPSNHRLL-FEVFDENRLTRDDFLGQVDVPLSHLPTE 119
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 59 NPEWNHGMQFDLKGI---LFHDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDL 109
NP WN ++FDL+GI G I FE + +K IG V +KDL
Sbjct: 50 NPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQ-----NKLIGTATVALKDL 98
>pdb|3PF2|A Chain A, The Crystal Structure Of The Major Pilin Gbs80 Of
Streptococcus Agalactiae 35kda C-Terminal Fragment
pdb|3PG2|A Chain A, The Crystal Structure Of The Major Pilin Gbs80 Of
Streptococcus Agalactiae 35 Kda C-Terminal Fragment
pdb|3PG2|B Chain B, The Crystal Structure Of The Major Pilin Gbs80 Of
Streptococcus Agalactiae 35 Kda C-Terminal Fragment
Length = 319
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 154 GTTQITGFSIVNDSQRPGYEIQYPQAEYPAYSSPPGGSLYPRLEIETTVMHPTYCTQ 210
GT +I G + D+ G + Y E A P G + P EIE TV +Y T+
Sbjct: 246 GTFEIKGLAYAVDANAEGTAVTYKLKETKA----PEGYVIPDKEIEFTVSQTSYNTK 298
>pdb|3E6P|L Chain L, Crystal Structure Of Human Meizothrombin Desf1
Length = 158
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 112 EFNGVVRFVDYEVRNPDGKPNGVLTFSYKVNGMNSAIGTDY--PGTTQITGFSIVNDSQR 169
+FN V+ V+ RNPDG GV + G +Y + TG + DS R
Sbjct: 45 DFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDR 104
Query: 170 PGYEIQYPQAEYPAYSSP 187
E + +EY + +P
Sbjct: 105 -AIEGRTATSEYQTFFNP 121
>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With
Bound Inhibitor Fragment
Length = 293
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 52 TDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLIS 111
+KE E ++ L G+ + I HF+LK E +M D+ + + R+ I D
Sbjct: 105 AEKESLTEEEATEFLKQILNGVYYLHSLQI-AHFDLKPENIMLLDRNVPKPRIKIIDF-- 161
Query: 112 EFNGVVRFVDY--EVRNPDGKPNGV 134
G+ +D+ E +N G P V
Sbjct: 162 ---GLAHKIDFGNEFKNIFGTPEFV 183
>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp
pdb|3GU5|A Chain A, Crystal Structure Of Dapkq23v-Amppnp-Mg2+
pdb|3GU6|A Chain A, Crystal Structure Of Dapkq23v-Adp
pdb|3GU7|A Chain A, Crystal Structure Of Dapkq23v-Adp-Mg2+
Length = 295
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 52 TDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLIS 111
+KE E ++ L G+ + I HF+LK E +M D+ + + R+ I D
Sbjct: 106 AEKESLTEEEATEFLKQILNGVYYLHSLQI-AHFDLKPENIMLLDRNVPKPRIKIIDF-- 162
Query: 112 EFNGVVRFVDY--EVRNPDGKPNGV 134
G+ +D+ E +N G P V
Sbjct: 163 ---GLAHKIDFGNEFKNIFGTPEFV 184
>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase
In Complex With Amppnp And Mg2+
Length = 295
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 52 TDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLIS 111
+KE E ++ L G+ + I HF+LK E +M D+ + + R+ I D
Sbjct: 106 AEKESLTEEEATEFLKQILNGVYYLHSLQI-AHFDLKPENIMLLDRNVPKPRIKIIDF-- 162
Query: 112 EFNGVVRFVDY--EVRNPDGKPNGV 134
G+ +D+ E +N G P V
Sbjct: 163 ---GLAHKIDFGNEFKNIFGTPEFV 184
>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain With
Amppnp
pdb|3DGK|A Chain A, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain
Length = 295
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 52 TDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLIS 111
+KE E ++ L G+ + I HF+LK E +M D+ + + R+ I D
Sbjct: 106 AEKESLTEEEATEFLKQILNGVYYLHSLQI-AHFDLKPENIMLLDRNVPKPRIKIIDF-- 162
Query: 112 EFNGVVRFVDY--EVRNPDGKPNGV 134
G+ +D+ E +N G P V
Sbjct: 163 ---GLAHKIDFGNEFKNIFGTPEFV 184
>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex
Length = 334
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 52 TDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLIS 111
+KE E ++ L G+ + I HF+LK E +M D+ + + R+ I D
Sbjct: 106 AEKESLTEEEATEFLKQILNGVYYLHSLQI-AHFDLKPENIMLLDRNVPKPRIKIIDF-- 162
Query: 112 EFNGVVRFVDY--EVRNPDGKPNGV 134
G+ +D+ E +N G P V
Sbjct: 163 ---GLAHKIDFGNEFKNIFGTPEFV 184
>pdb|1DFB|L Chain L, Structure Of A Human Monoclonal Antibody Fab Fragment
Against Gp41 Of Human Immunodeficiency Virus Type I
Length = 212
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 103 RVPIKDLISEFNGVVRFVDYEVRNPDGKPNGVLTFSYKVNGMNSAIGTDYPGTTQITGFS 162
RV I S+ + R++ + + P P ++ YK + + S + + + G+ T F+
Sbjct: 18 RVTITCRASQ--SISRWLAWYQQKPGKVPKLLI---YKASSLESGVPSRFSGSGSGTEFT 72
Query: 163 IVNDSQRPGYEIQYPQAEYPAYSSPPGGSLYPRLEIETTVMHPT 206
+ S +P Y +Y +YS PG +++I+ TV P+
Sbjct: 73 LTISSLQPDDFATYYCQQYNSYSFGPG----TKVDIKRTVAAPS 112
>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mn.
pdb|1JKL|A Chain A, 1.6a X-Ray Structure Of Binary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue
pdb|1JKS|A Chain A, 1.5a X-Ray Structure Of Apo Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|A Chain A, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|B Chain B, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKK|A Chain A, 2.4a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mg.
pdb|3F5G|A Chain A, Crystal Structure Of Death Associated Protein Kinase In
Complex With Adp And Mg2+
pdb|3EH9|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Adp
pdb|3EHA|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Amppnp
Length = 294
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 52 TDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLIS 111
+KE E ++ L G+ + I HF+LK E +M D+ + + R+ I D
Sbjct: 105 AEKESLTEEEATEFLKQILNGVYYLHSLQI-AHFDLKPENIMLLDRNVPKPRIKIIDF-- 161
Query: 112 EFNGVVRFVDY--EVRNPDGKPNGV 134
G+ +D+ E +N G P V
Sbjct: 162 ---GLAHKIDFGNEFKNIFGTPEFV 183
>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine
pdb|3GUB|A Chain A, Crystal Structure Of Dapkl93g Complexed With N6-(2-
Phenylethyl)adenosine
Length = 295
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 52 TDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLIS 111
+KE E ++ L G+ + I HF+LK E +M D+ + + R+ I D
Sbjct: 106 AEKESLTEEEATEFLKQILNGVYYLHSLQI-AHFDLKPENIMLLDRNVPKPRIKIIDF-- 162
Query: 112 EFNGVVRFVDY--EVRNPDGKPNGV 134
G+ +D+ E +N G P V
Sbjct: 163 ---GLAHKIDFGNEFKNIFGTPEFV 184
>pdb|2DK3|A Chain A, Solution Structure Of Mib-Herc2 Domain In Hect Domain
Containing Protein 1
Length = 86
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 116 VVRFVDYEVRNPDGKPNGVLTFSYKVNGMNSAIGTDYPGTTQITGFSIVNDSQRPGYEIQ 175
V+R +D++ R+ DG P G T + G + G +T + ++S R G E +
Sbjct: 22 VIRGLDWKWRDQDGSPQGEGTVT----------GELHNGWIDVTWDAGGSNSYRMGAEGK 71
Query: 176 YPQAEYPAYSSPPGG 190
+ P YS P G
Sbjct: 72 FDLKLAPGYSGPSSG 86
>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302
Length = 302
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 52 TDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLIS 111
+KE E ++ L G+ + I HF+LK E +M D+ + + R+ I D
Sbjct: 106 AEKESLTEEEATEFLKQILNGVYYLHSLQI-AHFDLKPENIMLLDRNVPKPRIKIIDF-- 162
Query: 112 EFNGVVRFVDY--EVRNPDGKPNGV 134
G+ +D+ E +N G P V
Sbjct: 163 ---GLAHKIDFGNEFKNIFGTPEFV 184
>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In
Complex With A Ruthenium Octasporine Ligand (Osv)
pdb|2Y4P|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|3ZXT|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
Length = 285
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 52 TDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLIS 111
+KE E ++ L G+ + I HF+LK E +M D+ + + R+ I D
Sbjct: 106 AEKESLTEEEATEFLKQILNGVYYLHSLQI-AHFDLKPENIMLLDRNVPKPRIKIIDF-- 162
Query: 112 EFNGVVRFVDY--EVRNPDGKPNGV 134
G+ +D+ E +N G P V
Sbjct: 163 ---GLAHKIDFGNEFKNIFGTPEFV 184
>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312
pdb|2XZS|B Chain B, Death Associated Protein Kinase 1 Residues 1-312
Length = 312
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 52 TDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLIS 111
+KE E ++ L G+ + I HF+LK E +M D+ + + R+ I D
Sbjct: 106 AEKESLTEEEATEFLKQILNGVYYLHSLQI-AHFDLKPENIMLLDRNVPKPRIKIIDF-- 162
Query: 112 EFNGVVRFVDY--EVRNPDGKPNGV 134
G+ +D+ E +N G P V
Sbjct: 163 ---GLAHKIDFGNEFKNIFGTPEFV 184
>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277
Length = 277
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 52 TDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLIS 111
+KE E ++ L G+ + I HF+LK E +M D+ + + R+ I D
Sbjct: 106 AEKESLTEEEATEFLKQILNGVYYLHSLQI-AHFDLKPENIMLLDRNVPKPRIKIIDF-- 162
Query: 112 EFNGVVRFVDY--EVRNPDGKPNGV 134
G+ +D+ E +N G P V
Sbjct: 163 ---GLAHKIDFGNEFKNIFGTPEFV 184
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 38/130 (29%)
Query: 6 LEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHG 65
L++KV+ DL A +F K + L+ + +D + Q H + NPEWN
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGND-------RLQTHTVYKNL----NPEWNKV 63
Query: 66 MQFDLKGILFHDCGHIFVHFELKHEGVMFGDK---TIGEVRVPI---------------K 107
F +K I HD + V E GDK +G+V +P+ K
Sbjct: 64 FTFPIKDI--HDVLEVTVFDE-------DGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNK 114
Query: 108 DLISEFNGVV 117
DL F GV+
Sbjct: 115 DLEQAFKGVI 124
>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVX|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVY|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
Length = 278
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 52 TDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLIS 111
+KE E ++ L G+ + I HF+LK E +M D+ + + R+ I D
Sbjct: 106 AEKESLTEEEATEFLKQILNGVYYLHSLQI-AHFDLKPENIMLLDRNVPKPRIKIIDF-- 162
Query: 112 EFNGVVRFVDY--EVRNPDGKPNGV 134
G+ +D+ E +N G P V
Sbjct: 163 ---GLAHKIDFGNEFKNIFGTPEFV 184
>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304
Length = 326
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 52 TDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLIS 111
+KE E ++ L G+ + I HF+LK E +M D+ + + R+ I D
Sbjct: 106 AEKESLTEEEATEFLKQILNGVYYLHSLQI-AHFDLKPENIMLLDRNVPKPRIKIIDF-- 162
Query: 112 EFNGVVRFVDY--EVRNPDGKPNGV 134
G+ +D+ E +N G P V
Sbjct: 163 ---GLAHKIDFGNEFKNIFGTPEFV 184
>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1
Length = 424
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 112 EFNGVVRFVDYEVRNPDGKPNGVLTFSYKVNGMNSAIGTDY--PGTTQITGFSIVNDSQR 169
+FN V+ V+ RNPDG GV + G +Y + TG + DS R
Sbjct: 52 DFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDR 111
Query: 170 PGYEIQYPQAEYPAYSSP 187
E +EY + +P
Sbjct: 112 -AIEGATATSEYQTFFNP 128
>pdb|1FM2|B Chain B, The 2 Angstrom Crystal Structure Of Cephalosporin Acylase
pdb|1JVZ|B Chain B, Structure Of Cephalosporin Acylase In Complex With
Glutaryl- 7-Aminocephalosporanic Acid
pdb|1JW0|B Chain B, Structure Of Cephalosporin Acylase In Complex With
Glutarate
Length = 520
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 166 DSQRPGYEIQYPQAEYPAYSSPPGGSLYPRLEIETTVMHP-TYCTQQDVQYASPGTPH 222
DS R + +P + P ++PPGG + + T P TYC Y +P TPH
Sbjct: 214 DSSRYLWTETHPLDDLPRVTNPPGGFVQNSNDPPWTPTWPVTYCPANHPSYLAPQTPH 271
>pdb|1KEH|A Chain A, Precursor Structure Of Cephalosporin Acylase
Length = 689
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 166 DSQRPGYEIQYPQAEYPAYSSPPGGSLYPRLEIETTVMHP-TYCTQQDVQYASPGTPH 222
DS R + +P + P ++PPGG + + T P TYC Y +P TPH
Sbjct: 383 DSSRYLWTETHPLDDLPRVTNPPGGFVQNSNDPPWTPTWPVTYCPANHPSYLAPQTPH 440
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,036,622
Number of Sequences: 62578
Number of extensions: 494072
Number of successful extensions: 921
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 918
Number of HSP's gapped (non-prelim): 35
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)