BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036009
         (318 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P21979|SPAA_STRDO Cell surface antigen I/II OS=Streptococcus downei GN=spaA PE=3 SV=2
          Length = 1528

 Score = 42.7 bits (99), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 13/118 (11%)

Query: 170 PGYEIQYP------QAEYPAYSSPPGGSLYPRLEIETTVMHPTYCTQQDVQYASPGTPHV 223
           P YE++        + +Y    +PP  S  P   I    + PTY  +++++ A    P  
Sbjct: 860 PTYEVEKELVDLPVEPKYEPEPTPP--SKNPDQSIPEKPVEPTYEVEKELEPA----PVE 913

Query: 224 PQESYYPPPNACYPPPPQPPTPAEPFYLQQP-PPASPMAHGANWPDAGPQMGYHNYSM 280
           P     P P    P   +P  P EP Y   P PP  P+      P + P + YH Y +
Sbjct: 914 PSYEKEPTPPQSTPDQEEPEKPVEPSYQSLPTPPVEPVYETVPGPVSVPTVRYHYYKL 971


>sp|Q941L2|BAP1_ARATH BON1-associated protein 1 OS=Arabidopsis thaliana GN=BAP1 PE=1 SV=1
          Length = 192

 Score = 40.0 bits (92), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 18/143 (12%)

Query: 1   MESSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNP 60
           M + +LEI +   + LK      K   + +V I           ++  ++  D+    NP
Sbjct: 15  MMTKTLEIDLRSAEGLKLNRRPIKKKTFAVVKI----------DEKCRKSNLDESRRSNP 64

Query: 61  EWNHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLISEFN--GVVR 118
            WN+  +  + G         F+  E+ +      DK IGE ++P  D +  ++  G + 
Sbjct: 65  TWNYKSEMPING------NEQFIFIEVFYRTGSGHDKKIGEAKIPTNDFMGRYSPEGHLN 118

Query: 119 FVDYEVRNPDGKPNGVLTFSYKV 141
           F+ Y +R+  G   G++  S  V
Sbjct: 119 FLSYRLRDEFGDKCGIVNLSILV 141


>sp|O75923|DYSF_HUMAN Dysferlin OS=Homo sapiens GN=DYSF PE=1 SV=1
          Length = 2080

 Score = 39.7 bits (91), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 34  VSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVM 93
           +SD     +    K RT   K    NP WN G ++DLKGI       +  H  +K    M
Sbjct: 19  ISDAYCSAVFAGVKKRTKVIKNS-VNPVWNEGFEWDLKGIPLDQGSEL--HVVVKDHETM 75

Query: 94  FGDKTIGEVRVPIKDLIS 111
             ++ +GE +VP++++++
Sbjct: 76  GRNRFLGEAKVPLREVLA 93


>sp|Q69ZN7|MYOF_MOUSE Myoferlin OS=Mus musculus GN=Myof PE=1 SV=2
          Length = 2048

 Score = 38.1 bits (87), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 55  EGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLISEFN 114
           + + NP WN  ++FDL+GI       + +   +K    +  +K IG   V +KDLI + N
Sbjct: 39  DNELNPVWNEILEFDLRGIPLDSSSSLVIV--VKDFETIGQNKLIGTATVSLKDLIGDQN 96

Query: 115 GVVRFVDYEVRNPDGKPNG 133
             + +    + N  G+  G
Sbjct: 97  RSLPYKQTSLLNEKGQDTG 115


>sp|P03186|DEN_EBVB9 Deneddylase BPLF1 OS=Epstein-Barr virus (strain B95-8) GN=BPLF1
           PE=1 SV=1
          Length = 3149

 Score = 32.3 bits (72), Expect = 4.7,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 9/52 (17%)

Query: 222 HVPQESYYPPPNACYPPPPQPPTPAEPFYLQQPPPASPMAHGANWPDAGPQM 273
           HVP    + PP+A   PPP  P P       Q PPASP  H A      P +
Sbjct: 450 HVPP---HRPPSAARLPPPVIPIP------HQSPPASPTPHPAPVSTIAPSV 492


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.137    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,630,714
Number of Sequences: 539616
Number of extensions: 7873041
Number of successful extensions: 46428
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 999
Number of HSP's that attempted gapping in prelim test: 28734
Number of HSP's gapped (non-prelim): 9507
length of query: 318
length of database: 191,569,459
effective HSP length: 117
effective length of query: 201
effective length of database: 128,434,387
effective search space: 25815311787
effective search space used: 25815311787
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)