Query 036009
Match_columns 318
No_of_seqs 192 out of 1469
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:32:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036009.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036009hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04016 C2_Tollip C2 domain pr 99.9 8.8E-23 1.9E-27 171.3 14.1 118 4-141 2-121 (121)
2 cd04051 C2_SRC2_like C2 domain 99.9 2.9E-22 6.4E-27 166.0 12.7 123 5-137 1-125 (125)
3 cd08681 C2_fungal_Inn1p-like C 99.9 4.6E-21 9.9E-26 157.1 12.4 118 4-141 1-118 (118)
4 cd08682 C2_Rab11-FIP_classI C2 99.9 6.3E-21 1.4E-25 158.8 13.2 123 6-140 1-126 (126)
5 cd04042 C2A_MCTP_PRT C2 domain 99.9 1.6E-20 3.5E-25 155.2 14.7 120 5-143 1-121 (121)
6 cd04022 C2A_MCTP_PRT_plant C2 99.8 3.2E-20 6.9E-25 154.8 14.7 124 5-143 1-127 (127)
7 cd04019 C2C_MCTP_PRT_plant C2 99.8 3.4E-20 7.4E-25 160.7 13.9 127 5-146 1-136 (150)
8 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 7.1E-20 1.5E-24 153.0 14.1 128 5-142 1-133 (133)
9 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.4E-19 3E-24 153.1 14.3 113 5-137 1-125 (126)
10 cd08678 C2_C21orf25-like C2 do 99.8 4.1E-19 8.9E-24 148.1 14.9 120 6-145 1-123 (126)
11 cd08377 C2C_MCTP_PRT C2 domain 99.8 6.2E-19 1.3E-23 144.2 14.4 116 4-141 1-118 (119)
12 cd04036 C2_cPLA2 C2 domain pre 99.8 5.9E-19 1.3E-23 145.4 13.8 116 6-141 2-117 (119)
13 cd08378 C2B_MCTP_PRT_plant C2 99.8 4.6E-19 1E-23 147.8 13.0 116 6-142 2-120 (121)
14 cd04044 C2A_Tricalbin-like C2 99.8 4.9E-19 1.1E-23 145.4 12.8 122 4-143 2-124 (124)
15 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 6.6E-19 1.4E-23 145.7 13.1 117 5-140 1-123 (123)
16 cd08375 C2_Intersectin C2 doma 99.8 1.5E-18 3.3E-23 147.8 14.6 120 3-141 14-135 (136)
17 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 1.3E-18 2.8E-23 144.5 13.8 119 5-141 1-121 (121)
18 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.7E-18 3.6E-23 144.4 14.5 118 5-141 1-121 (121)
19 cd08376 C2B_MCTP_PRT C2 domain 99.8 2.4E-18 5.2E-23 140.6 15.2 115 5-142 1-115 (116)
20 cd08395 C2C_Munc13 C2 domain t 99.8 9.9E-19 2.2E-23 146.7 13.0 112 5-126 1-112 (120)
21 cd04015 C2_plant_PLD C2 domain 99.8 1.5E-18 3.3E-23 151.4 14.6 119 4-142 7-158 (158)
22 cd04046 C2_Calpain C2 domain p 99.8 2E-18 4.3E-23 144.3 14.5 118 3-143 2-123 (126)
23 KOG1030 Predicted Ca2+-depende 99.8 3.4E-19 7.3E-24 156.6 9.7 96 1-113 3-98 (168)
24 cd08381 C2B_PI3K_class_II C2 d 99.8 1.2E-18 2.5E-23 145.5 12.4 109 3-124 12-121 (122)
25 cd08392 C2A_SLP-3 C2 domain fi 99.8 1.3E-18 2.8E-23 146.9 12.6 113 3-124 14-127 (128)
26 cd08400 C2_Ras_p21A1 C2 domain 99.8 3.2E-18 7E-23 143.4 14.8 119 3-143 3-124 (126)
27 cd04024 C2A_Synaptotagmin-like 99.8 2.1E-18 4.5E-23 142.6 13.1 122 4-141 1-128 (128)
28 cd08677 C2A_Synaptotagmin-13 C 99.8 1.1E-18 2.4E-23 146.3 11.2 96 3-111 13-108 (118)
29 cd08382 C2_Smurf-like C2 domai 99.8 3.3E-18 7.1E-23 142.4 13.2 116 5-139 1-122 (123)
30 cd08373 C2A_Ferlin C2 domain f 99.8 9E-18 1.9E-22 139.8 14.8 120 10-148 2-122 (127)
31 cd04014 C2_PKC_epsilon C2 doma 99.8 8.8E-18 1.9E-22 140.9 14.4 120 1-143 1-130 (132)
32 cd08385 C2A_Synaptotagmin-1-5- 99.8 6.3E-18 1.4E-22 139.8 13.0 109 3-125 15-123 (124)
33 cd08393 C2A_SLP-1_2 C2 domain 99.8 4.3E-18 9.4E-23 142.4 11.8 110 3-124 14-124 (125)
34 cd04049 C2_putative_Elicitor-r 99.8 7E-18 1.5E-22 139.8 12.4 98 4-113 1-98 (124)
35 cd04029 C2A_SLP-4_5 C2 domain 99.8 9.4E-18 2E-22 140.6 12.4 111 2-124 13-124 (125)
36 cd04017 C2D_Ferlin C2 domain f 99.8 1.5E-17 3.3E-22 140.5 13.7 126 5-143 2-133 (135)
37 cd08387 C2A_Synaptotagmin-8 C2 99.8 1.1E-17 2.4E-22 138.5 12.7 109 3-125 15-123 (124)
38 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.3E-17 2.8E-22 136.4 12.7 115 4-141 1-121 (121)
39 cd04043 C2_Munc13_fungal C2 do 99.8 3.4E-17 7.5E-22 135.6 15.3 121 5-143 2-122 (126)
40 cd08688 C2_KIAA0528-like C2 do 99.7 7.3E-18 1.6E-22 137.6 10.5 107 6-126 1-109 (110)
41 cd04040 C2D_Tricalbin-like C2 99.7 1.8E-17 3.9E-22 135.0 12.5 114 6-137 1-114 (115)
42 cd08388 C2A_Synaptotagmin-4-11 99.7 2.9E-17 6.2E-22 138.2 13.8 110 3-124 15-126 (128)
43 cd04021 C2_E3_ubiquitin_ligase 99.7 4.9E-17 1.1E-21 136.0 14.5 118 4-139 2-124 (125)
44 cd08389 C2A_Synaptotagmin-14_1 99.7 1.9E-17 4.2E-22 138.4 11.9 107 3-124 15-122 (124)
45 cd04030 C2C_KIAA1228 C2 domain 99.7 3.4E-17 7.4E-22 135.6 13.2 110 3-124 15-126 (127)
46 cd04010 C2B_RasA3 C2 domain se 99.7 2.8E-17 6.1E-22 142.5 13.0 114 5-128 1-124 (148)
47 cd04039 C2_PSD C2 domain prese 99.7 1.6E-17 3.6E-22 136.2 10.8 95 4-113 1-99 (108)
48 cd04041 C2A_fungal C2 domain f 99.7 1.7E-17 3.7E-22 135.6 10.6 100 4-113 1-101 (111)
49 cd08691 C2_NEDL1-like C2 domai 99.7 7.6E-17 1.7E-21 138.1 15.0 126 5-139 2-136 (137)
50 cd00275 C2_PLC_like C2 domain 99.7 9.8E-17 2.1E-21 132.4 15.1 121 5-141 3-127 (128)
51 cd08680 C2_Kibra C2 domain fou 99.7 2.2E-17 4.8E-22 139.1 11.3 112 3-124 13-124 (124)
52 cd08685 C2_RGS-like C2 domain 99.7 3E-17 6.6E-22 136.7 12.0 108 3-124 11-119 (119)
53 cd04050 C2B_Synaptotagmin-like 99.7 2.7E-17 5.7E-22 133.1 11.3 102 5-126 1-102 (105)
54 cd04028 C2B_RIM1alpha C2 domai 99.7 4.5E-17 9.8E-22 141.1 13.4 110 3-127 28-139 (146)
55 cd08521 C2A_SLP C2 domain firs 99.7 4.7E-17 1E-21 133.8 12.2 110 3-124 13-123 (123)
56 cd04011 C2B_Ferlin C2 domain s 99.7 3.4E-17 7.5E-22 133.5 11.3 107 5-127 5-111 (111)
57 cd04045 C2C_Tricalbin-like C2 99.7 5.5E-17 1.2E-21 135.1 12.1 105 4-128 1-105 (120)
58 cd04031 C2A_RIM1alpha C2 domai 99.7 5.4E-17 1.2E-21 133.8 11.8 110 2-124 14-124 (125)
59 cd08690 C2_Freud-1 C2 domain f 99.7 2E-16 4.4E-21 138.4 15.5 137 5-150 3-145 (155)
60 cd04027 C2B_Munc13 C2 domain s 99.7 1.2E-16 2.7E-21 133.6 13.2 113 5-139 2-127 (127)
61 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.2E-16 2.5E-21 132.3 12.2 108 3-124 15-123 (125)
62 cd08390 C2A_Synaptotagmin-15-1 99.7 1.7E-16 3.7E-21 130.7 12.8 109 3-125 13-122 (123)
63 cd08406 C2B_Synaptotagmin-12 C 99.7 1.2E-16 2.6E-21 136.5 11.5 97 3-108 14-110 (136)
64 cd08407 C2B_Synaptotagmin-13 C 99.7 1.6E-16 3.4E-21 136.4 10.9 97 3-108 14-112 (138)
65 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 2.8E-16 6E-21 137.8 12.0 111 3-125 26-137 (162)
66 cd08404 C2B_Synaptotagmin-4 C2 99.7 8.1E-17 1.8E-21 135.9 8.3 117 3-133 14-130 (136)
67 cd08394 C2A_Munc13 C2 domain f 99.7 2.6E-16 5.7E-21 133.5 11.0 100 4-126 2-101 (127)
68 cd04009 C2B_Munc13-like C2 dom 99.7 3.2E-16 7E-21 132.1 11.6 106 3-113 15-120 (133)
69 cd04018 C2C_Ferlin C2 domain t 99.7 3E-16 6.6E-21 136.6 11.6 107 5-126 1-125 (151)
70 cd08383 C2A_RasGAP C2 domain ( 99.7 9.3E-16 2E-20 124.9 13.5 115 5-141 1-117 (117)
71 cd08384 C2B_Rabphilin_Doc2 C2 99.7 3.6E-16 7.8E-21 131.0 11.1 114 3-130 12-125 (133)
72 cd04038 C2_ArfGAP C2 domain pr 99.7 1.2E-15 2.5E-20 131.9 14.1 91 4-112 2-92 (145)
73 cd08402 C2B_Synaptotagmin-1 C2 99.7 5.9E-16 1.3E-20 130.5 11.4 98 3-109 14-111 (136)
74 cd00276 C2B_Synaptotagmin C2 d 99.7 1.9E-16 4.1E-21 131.7 8.2 115 2-130 12-126 (134)
75 cd08403 C2B_Synaptotagmin-3-5- 99.7 6.2E-16 1.3E-20 130.0 11.4 97 2-107 12-108 (134)
76 cd08405 C2B_Synaptotagmin-7 C2 99.7 5.8E-16 1.3E-20 130.5 11.0 98 3-109 14-111 (136)
77 cd08408 C2B_Synaptotagmin-14_1 99.7 6.8E-16 1.5E-20 131.9 11.5 99 3-109 14-112 (138)
78 cd04032 C2_Perforin C2 domain 99.7 5.9E-16 1.3E-20 131.1 10.7 91 4-110 28-118 (127)
79 cd08410 C2B_Synaptotagmin-17 C 99.7 1E-15 2.2E-20 129.6 11.7 97 2-107 12-108 (135)
80 cd08409 C2B_Synaptotagmin-15 C 99.6 1.2E-15 2.6E-20 129.8 11.4 98 3-110 14-111 (137)
81 cd04035 C2A_Rabphilin_Doc2 C2 99.6 2.7E-15 5.8E-20 124.1 12.3 102 2-113 13-115 (123)
82 cd08692 C2B_Tac2-N C2 domain s 99.6 2.1E-15 4.5E-20 129.3 12.0 98 3-109 13-110 (135)
83 PLN03008 Phospholipase D delta 99.6 1.7E-15 3.8E-20 159.7 13.9 125 4-148 14-183 (868)
84 cd04026 C2_PKC_alpha_gamma C2 99.6 2.6E-15 5.6E-20 125.5 11.8 111 3-127 12-122 (131)
85 cd04037 C2E_Ferlin C2 domain f 99.6 2E-15 4.3E-20 126.1 10.7 93 5-111 1-93 (124)
86 cd04048 C2A_Copine C2 domain f 99.6 4.5E-15 9.8E-20 122.6 12.4 104 10-126 6-114 (120)
87 cd04052 C2B_Tricalbin-like C2 99.6 2.3E-15 5E-20 123.2 10.0 102 21-143 9-110 (111)
88 cd08675 C2B_RasGAP C2 domain s 99.6 6.4E-15 1.4E-19 125.5 11.9 111 6-127 1-121 (137)
89 cd04013 C2_SynGAP_like C2 doma 99.6 1.6E-14 3.4E-19 125.4 14.3 118 4-145 11-142 (146)
90 KOG1028 Ca2+-dependent phospho 99.6 1.1E-14 2.4E-19 145.4 13.5 128 3-144 166-296 (421)
91 cd08676 C2A_Munc13-like C2 dom 99.6 1E-14 2.3E-19 127.2 10.7 109 2-124 26-153 (153)
92 KOG0696 Serine/threonine prote 99.6 1.2E-15 2.7E-20 150.5 4.2 110 3-126 179-288 (683)
93 cd08686 C2_ABR C2 domain in th 99.6 4.8E-14 1E-18 118.3 12.8 109 6-141 1-118 (118)
94 cd04047 C2B_Copine C2 domain s 99.5 7.3E-14 1.6E-18 113.2 12.1 98 8-112 4-101 (110)
95 PLN03200 cellulose synthase-in 99.5 3.1E-14 6.7E-19 161.5 11.0 119 4-143 1980-2101(2102)
96 PF00168 C2: C2 domain; Inter 99.5 1.6E-13 3.4E-18 103.7 10.9 85 6-103 1-85 (85)
97 PLN02223 phosphoinositide phos 99.5 6.1E-13 1.3E-17 135.5 14.2 111 4-131 409-524 (537)
98 PLN02952 phosphoinositide phos 99.4 1.2E-12 2.6E-17 135.4 14.1 122 4-142 470-597 (599)
99 PLN02270 phospholipase D alpha 99.4 4.3E-12 9.3E-17 134.0 13.6 126 4-148 8-154 (808)
100 PLN02230 phosphoinositide phos 99.3 8.9E-12 1.9E-16 128.8 13.6 121 4-141 469-597 (598)
101 PLN02228 Phosphoinositide phos 99.3 1.3E-11 2.9E-16 126.9 14.8 124 4-144 431-563 (567)
102 smart00239 C2 Protein kinase C 99.3 1.2E-11 2.6E-16 94.7 11.0 96 5-113 1-96 (101)
103 PLN02222 phosphoinositide phos 99.3 1.3E-11 2.8E-16 127.3 14.4 121 4-141 452-580 (581)
104 KOG1011 Neurotransmitter relea 99.3 2.2E-12 4.7E-17 132.1 7.7 123 4-148 295-430 (1283)
105 KOG0169 Phosphoinositide-speci 99.3 1.1E-11 2.4E-16 129.1 11.4 122 5-142 617-744 (746)
106 cd08374 C2F_Ferlin C2 domain s 99.3 1.9E-11 4.1E-16 104.7 10.6 101 5-113 1-125 (133)
107 cd00030 C2 C2 domain. The C2 d 99.3 3E-11 6.6E-16 91.4 10.2 90 6-110 1-90 (102)
108 KOG2059 Ras GTPase-activating 99.3 1.8E-11 3.9E-16 126.4 10.2 151 4-172 5-155 (800)
109 COG5038 Ca2+-dependent lipid-b 99.3 2.5E-11 5.4E-16 130.8 11.6 126 3-147 435-562 (1227)
110 KOG1028 Ca2+-dependent phospho 99.2 5.7E-11 1.2E-15 118.9 10.3 97 3-108 297-393 (421)
111 KOG1264 Phospholipase C [Lipid 99.1 2.5E-10 5.3E-15 119.5 10.5 107 4-127 1065-1172(1267)
112 COG5038 Ca2+-dependent lipid-b 99.1 4.3E-10 9.2E-15 121.5 9.3 128 3-148 1039-1167(1227)
113 PLN02352 phospholipase D epsil 99.0 4.2E-09 9.2E-14 111.3 12.2 119 4-147 10-135 (758)
114 cd08689 C2_fungal_Pkc1p C2 dom 98.9 3.3E-09 7.2E-14 87.6 6.9 86 6-112 1-89 (109)
115 KOG1031 Predicted Ca2+-depende 98.8 1.5E-08 3.3E-13 103.5 9.2 126 4-143 3-137 (1169)
116 KOG1328 Synaptic vesicle prote 98.7 6E-09 1.3E-13 108.3 1.1 134 6-147 116-306 (1103)
117 KOG1328 Synaptic vesicle prote 98.6 2.5E-08 5.5E-13 103.8 2.2 103 4-111 947-1049(1103)
118 KOG1011 Neurotransmitter relea 98.3 4.5E-06 9.7E-11 86.6 9.9 113 4-126 1125-1237(1283)
119 KOG0905 Phosphoinositide 3-kin 98.2 7.5E-07 1.6E-11 96.8 4.4 112 3-126 1523-1635(1639)
120 KOG2059 Ras GTPase-activating 98.2 1.8E-06 4E-11 90.0 7.1 123 10-143 137-277 (800)
121 KOG1013 Synaptic vesicle prote 98.2 3E-07 6.6E-12 88.8 -0.8 134 2-143 91-230 (362)
122 KOG3837 Uncharacterized conser 98.1 1.4E-06 3.1E-11 86.4 2.4 148 4-165 367-522 (523)
123 KOG1013 Synaptic vesicle prote 98.0 8.7E-06 1.9E-10 78.9 5.2 94 4-106 233-326 (362)
124 KOG1265 Phospholipase C [Lipid 97.9 5.2E-05 1.1E-09 81.1 9.9 109 4-133 703-812 (1189)
125 cd08684 C2A_Tac2-N C2 domain f 97.7 7.8E-05 1.7E-09 60.3 5.2 93 7-112 2-95 (103)
126 cd08683 C2_C2cd3 C2 domain fou 97.6 0.00013 2.8E-09 62.7 6.0 109 6-123 1-142 (143)
127 KOG1326 Membrane-associated pr 97.6 3.5E-05 7.5E-10 83.1 2.8 90 5-108 614-703 (1105)
128 PLN02964 phosphatidylserine de 97.5 0.00017 3.7E-09 76.1 5.9 104 3-129 53-156 (644)
129 PF10358 NT-C2: N-terminal C2 97.3 0.017 3.6E-07 48.7 15.3 128 5-148 8-141 (143)
130 KOG1327 Copine [Signal transdu 96.6 0.0035 7.6E-08 64.6 6.3 94 11-111 143-236 (529)
131 cd08398 C2_PI3K_class_I_alpha 96.6 0.021 4.5E-07 50.4 10.2 95 3-108 7-105 (158)
132 cd08693 C2_PI3K_class_I_beta_d 96.6 0.019 4.1E-07 51.2 10.1 79 4-91 8-86 (173)
133 KOG1326 Membrane-associated pr 96.5 0.00059 1.3E-08 74.0 -0.5 106 6-126 208-317 (1105)
134 cd08380 C2_PI3K_like C2 domain 96.3 0.035 7.6E-07 48.0 9.4 97 4-108 8-106 (156)
135 cd04012 C2A_PI3K_class_II C2 d 96.1 0.034 7.4E-07 49.2 8.7 100 3-108 7-118 (171)
136 KOG2060 Rab3 effector RIM1 and 96.0 0.0052 1.1E-07 60.9 3.4 112 3-128 268-381 (405)
137 PF11618 DUF3250: Protein of u 96.0 0.058 1.3E-06 44.7 8.9 94 46-143 11-106 (107)
138 cd08399 C2_PI3K_class_I_gamma 95.9 0.11 2.4E-06 46.8 11.1 132 4-147 10-143 (178)
139 KOG1924 RhoA GTPase effector D 95.3 0.087 1.9E-06 56.7 9.3 15 57-71 441-455 (1102)
140 PF12416 DUF3668: Cep120 prote 95.1 0.25 5.5E-06 48.8 11.4 127 6-147 2-137 (340)
141 KOG1452 Predicted Rho GTPase-a 94.9 0.055 1.2E-06 52.9 6.1 92 3-111 50-143 (442)
142 PF15627 CEP76-C2: CEP76 C2 do 94.9 0.55 1.2E-05 41.6 11.7 132 4-145 9-153 (156)
143 PF00792 PI3K_C2: Phosphoinosi 94.6 0.63 1.4E-05 39.7 11.1 78 26-109 3-85 (142)
144 cd08397 C2_PI3K_class_III C2 d 94.5 0.2 4.4E-06 44.1 8.1 79 23-108 28-106 (159)
145 PF14429 DOCK-C2: C2 domain in 94.4 1.2 2.6E-05 39.5 13.1 100 4-108 7-120 (184)
146 cd08687 C2_PKN-like C2 domain 94.1 0.48 1E-05 38.7 8.7 84 25-141 9-92 (98)
147 cd08695 C2_Dock-B C2 domains f 93.5 1 2.2E-05 41.0 10.9 58 46-107 53-112 (189)
148 KOG1924 RhoA GTPase effector D 93.0 0.14 3.1E-06 55.1 5.2 7 311-317 641-647 (1102)
149 cd08679 C2_DOCK180_related C2 92.2 2.4 5.2E-05 37.6 11.3 55 50-108 56-115 (178)
150 cd08694 C2_Dock-A C2 domains f 91.3 3 6.5E-05 38.3 11.1 58 46-107 53-114 (196)
151 KOG1327 Copine [Signal transdu 89.7 0.81 1.8E-05 47.6 6.6 61 47-113 42-106 (529)
152 smart00142 PI3K_C2 Phosphoinos 88.8 3.4 7.5E-05 33.2 8.4 78 6-90 13-90 (100)
153 PF15625 CC2D2AN-C2: CC2D2A N- 88.6 3.4 7.4E-05 36.5 8.9 73 23-111 35-108 (168)
154 PF14924 DUF4497: Protein of u 88.4 1.5 3.4E-05 36.1 6.2 83 65-147 12-109 (112)
155 cd08697 C2_Dock-D C2 domains f 84.8 15 0.00033 33.3 11.1 59 46-108 56-123 (185)
156 cd08696 C2_Dock-C C2 domains f 83.7 3.6 7.7E-05 37.2 6.5 59 46-108 54-118 (179)
157 PF07162 B9-C2: Ciliary basal 80.5 29 0.00062 30.5 11.0 91 7-106 5-101 (168)
158 PF14186 Aida_C2: Cytoskeletal 80.4 16 0.00036 32.0 9.2 100 5-112 14-115 (147)
159 KOG1329 Phospholipase D1 [Lipi 80.1 2.5 5.3E-05 46.5 4.8 104 25-146 138-244 (887)
160 PF14909 SPATA6: Spermatogenes 73.3 45 0.00097 29.2 9.9 94 5-113 3-103 (140)
161 PTZ00447 apical membrane antig 71.6 43 0.00093 33.8 10.4 98 23-140 72-171 (508)
162 KOG3543 Ca2+-dependent activat 61.7 53 0.0011 35.6 9.4 116 5-145 342-462 (1218)
163 KOG1923 Rac1 GTPase effector F 58.1 29 0.00063 37.9 6.9 11 265-275 329-339 (830)
164 KOG2236 Uncharacterized conser 54.0 31 0.00068 35.6 6.1 15 218-232 408-422 (483)
165 PF08262 Lem_TRP: Leucophaea m 48.3 7.7 0.00017 19.1 0.4 7 271-277 2-8 (10)
166 COG5178 PRP8 U5 snRNP spliceos 46.9 14 0.00031 42.2 2.6 10 252-261 23-32 (2365)
167 PF12416 DUF3668: Cep120 prote 42.2 1E+02 0.0022 30.7 7.5 91 5-113 193-297 (340)
168 PF08151 FerI: FerI (NUC094) d 40.2 68 0.0015 24.8 4.8 38 112-149 9-49 (72)
169 KOG4672 Uncharacterized conser 36.3 81 0.0018 32.3 5.8 12 224-235 330-341 (487)
170 KOG2675 Adenylate cyclase-asso 33.0 31 0.00067 35.4 2.3 6 99-104 147-152 (480)
171 KOG4672 Uncharacterized conser 31.3 2.6E+02 0.0056 28.8 8.4 12 276-287 374-385 (487)
172 KOG0904 Phosphatidylinositol 3 28.9 2.3E+02 0.0049 32.0 8.0 76 4-89 343-420 (1076)
173 PHA03211 serine/threonine kina 25.8 61 0.0013 33.0 3.1 9 228-236 38-47 (461)
174 KOG0694 Serine/threonine prote 25.3 15 0.00033 39.5 -1.4 51 23-90 26-76 (694)
175 KOG2419 Phosphatidylserine dec 25.1 21 0.00046 38.5 -0.4 51 8-70 284-338 (975)
176 PF14472 DUF4429: Domain of un 25.1 1.1E+02 0.0023 24.4 3.8 50 82-141 7-56 (94)
177 PF06219 DUF1005: Protein of u 24.7 2.7E+02 0.0058 28.8 7.2 63 81-144 95-169 (460)
178 KOG0132 RNA polymerase II C-te 24.1 6.2E+02 0.014 28.3 10.1 14 98-111 508-521 (894)
179 KOG0906 Phosphatidylinositol 3 23.9 80 0.0017 34.3 3.5 78 23-107 45-122 (843)
180 PRK10301 hypothetical protein; 21.3 4.9E+02 0.011 21.8 7.3 35 102-140 88-124 (124)
181 cd05137 RasGAP_CLA2_BUD2 CLA2/ 20.6 1.1E+02 0.0023 31.1 3.6 43 98-143 1-45 (395)
182 KOG3671 Actin regulatory prote 20.0 1.9E+02 0.0041 30.5 5.2 8 217-224 390-397 (569)
No 1
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.89 E-value=8.8e-23 Score=171.35 Aligned_cols=118 Identities=20% Similarity=0.309 Sum_probs=100.3
Q ss_pred ceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEE
Q 036009 4 SSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFV 83 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L 83 (318)
++|+|+|++|++|++.+ ++++||||+|++.+ +++||+|+++++.||+|||+|.|.+.+. ...|
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~----------~~~kT~v~~~~~~nP~WNe~F~f~v~~~------~~~l 64 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGH----------AVYETPTAYNGAKNPRWNKTIQCTLPEG------VDSI 64 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECC----------EEEEeEEccCCCCCCccCeEEEEEecCC------CcEE
Confidence 68999999999999888 89999999999953 5789999988789999999999999753 2469
Q ss_pred EEEEeecCcCCCCcEEEEEEEeCcc-cccccCceeEEEEEEEeCCCCC-cceEEEEEEEE
Q 036009 84 HFELKHEGVMFGDKTIGEVRVPIKD-LISEFNGVVRFVDYEVRNPDGK-PNGVLTFSYKV 141 (318)
Q Consensus 84 ~feV~d~d~~~~Dd~IG~a~VpLsd-Ll~~~~g~~~~~sy~Lr~~sGk-~~G~L~ls~kf 141 (318)
.|+|||++.+++|++||.+.|+|.+ +..+. ....||.|...+|+ ..|.|+|+++|
T Consensus 65 ~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~---~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 65 YIEIFDERAFTMDERIAWTHITIPESVFNGE---TLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEeCCCCcCCceEEEEEEECchhccCCC---CccccEeCcCccCCCCceEEEEEEeC
Confidence 9999999999999999999999964 55432 35789999877665 57999999875
No 2
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.88 E-value=2.9e-22 Score=166.00 Aligned_cols=123 Identities=42% Similarity=0.784 Sum_probs=104.8
Q ss_pred eEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEE
Q 036009 5 SLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVH 84 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~ 84 (318)
+|+|+|++|++|+..+.+++.||||+|++.+ ..+++|+++++++.||+|||+|.|.+....+. .....|.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~---------~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~-~~~~~l~ 70 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP---------SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQ-QGRLALT 70 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC---------CcccccccccCCCCCCCCCCEEEEEcChHhcc-cCccEEE
Confidence 5899999999999999889999999999975 24789999877679999999999999765321 1246799
Q ss_pred EEEeecCcCCCCcEEEEEEEeCcccccccCc--eeEEEEEEEeCCCCCcceEEEE
Q 036009 85 FELKHEGVMFGDKTIGEVRVPIKDLISEFNG--VVRFVDYEVRNPDGKPNGVLTF 137 (318)
Q Consensus 85 feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g--~~~~~sy~Lr~~sGk~~G~L~l 137 (318)
|+|||++.+++|++||++.|+|.++..+... .....||+|++++|+.+|+|+|
T Consensus 71 ~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 71 IEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred EEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 9999999888899999999999999987542 2457899999999999999986
No 3
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.86 E-value=4.6e-21 Score=157.13 Aligned_cols=118 Identities=19% Similarity=0.286 Sum_probs=99.2
Q ss_pred ceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEE
Q 036009 4 SSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFV 83 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L 83 (318)
+.|+|+|++|++|+..+.++++||||+|++.+ .+.||+++++++.||+|||+|.|.+... ....|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~----------~~~kT~~~~~~~~nP~Wne~f~f~v~~~-----~~~~l 65 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG----------VTKKTKTDFRGGQHPEWDEELRFEITED-----KKPIL 65 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC----------CccccccccCCCCCCccCceEEEEecCC-----CCCEE
Confidence 57999999999999999899999999999964 3678998876678999999999999763 13479
Q ss_pred EEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCCcceEEEEEEEE
Q 036009 84 HFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKPNGVLTFSYKV 141 (318)
Q Consensus 84 ~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~~G~L~ls~kf 141 (318)
.|+|||++... |++||++.++|.++..+.. ...|+.|.+ +|+..|.|.|++.|
T Consensus 66 ~i~v~d~~~~~-~~~iG~~~~~l~~~~~~~~---~~~w~~L~~-~~~~~G~i~l~l~f 118 (118)
T cd08681 66 KVAVFDDDKRK-PDLIGDTEVDLSPALKEGE---FDDWYELTL-KGRYAGEVYLELTF 118 (118)
T ss_pred EEEEEeCCCCC-CcceEEEEEecHHHhhcCC---CCCcEEecc-CCcEeeEEEEEEEC
Confidence 99999988654 9999999999999876432 357888875 46789999999876
No 4
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.86 E-value=6.3e-21 Score=158.83 Aligned_cols=123 Identities=20% Similarity=0.370 Sum_probs=98.8
Q ss_pred EEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEE
Q 036009 6 LEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHF 85 (318)
Q Consensus 6 L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~f 85 (318)
|+|+|++|++|...+..+.+||||+|.+.+ .++||++++++ .||+|||+|.|.+......+.....|.|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~----------~~~kT~v~~~t-~nP~Wne~f~F~v~~~~~~~~~~~~l~~ 69 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK----------EKYSTSVKEKT-TSPVWKEECSFELPGLLSGNGNRATLQL 69 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECC----------eeeeeeeecCC-CCCEeCceEEEEecCcccCCCcCCEEEE
Confidence 589999999999998889999999999953 47899999774 8999999999998763111112457999
Q ss_pred EEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCC---CcceEEEEEEE
Q 036009 86 ELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDG---KPNGVLTFSYK 140 (318)
Q Consensus 86 eV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sG---k~~G~L~ls~k 140 (318)
+|||++.+++|++||++.|+|.++.... +.....||.|.+..+ +.+|+|+|+++
T Consensus 70 ~v~d~~~~~~d~~iG~~~i~l~~l~~~~-~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 70 TVMHRNLLGLDKFLGQVSIPLNDLDEDK-GRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred EEEEccccCCCceeEEEEEEHHHhhccC-CCcccEEEECcCCCCCCccccceEEEEeC
Confidence 9999998888999999999999987432 223568999986543 46799999863
No 5
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.85 E-value=1.6e-20 Score=155.16 Aligned_cols=120 Identities=16% Similarity=0.200 Sum_probs=102.3
Q ss_pred eEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEE
Q 036009 5 SLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVH 84 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~ 84 (318)
.|+|+|++|++|...+.++.+||||+|.+.+ ....||+++++ +.||+|||+|.|.+... ...|.
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~---------~~~~kT~~~~~-t~nP~Wne~f~f~v~~~------~~~l~ 64 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGG---------KTVYKSKTIYK-NLNPVWDEKFTLPIEDV------TQPLY 64 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECC---------EEEEEeeeccC-CCCCccceeEEEEecCC------CCeEE
Confidence 4899999999999999889999999999964 24789999876 69999999999998642 24699
Q ss_pred EEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCC-CcceEEEEEEEEee
Q 036009 85 FELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDG-KPNGVLTFSYKVNG 143 (318)
Q Consensus 85 feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sG-k~~G~L~ls~kf~~ 143 (318)
|+|||++.+.+|++||.+.++|.++..+. ....+++|.+..+ +..|+|.|.++|.+
T Consensus 65 ~~v~D~d~~~~~~~iG~~~~~l~~l~~~~---~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 65 IKVFDYDRGLTDDFMGSAFVDLSTLELNK---PTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred EEEEeCCCCCCCcceEEEEEEHHHcCCCC---CeEEEEECCCCCCccCceEEEEEEEECC
Confidence 99999998889999999999999998654 2467899987664 67899999999864
No 6
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.84 E-value=3.2e-20 Score=154.80 Aligned_cols=124 Identities=18% Similarity=0.231 Sum_probs=101.6
Q ss_pred eEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEE
Q 036009 5 SLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVH 84 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~ 84 (318)
+|.|+|++|++|...+..+.+||||+|.+.+ +++||+++++ +.||+|||+|.|.+.+... .....|.
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~----------~~~rT~v~~~-t~nP~Wne~f~f~~~~~~~--~~~~~l~ 67 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG----------QKKRTRTKPK-DLNPVWNEKLVFNVSDPSR--LSNLVLE 67 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC----------EEecceeEcC-CCCCccceEEEEEccCHHH--ccCCeEE
Confidence 5899999999999988888999999999964 4789999865 6999999999999975321 1135799
Q ss_pred EEEeecCcCC-CCcEEEEEEEeCcccccccCceeEEEEEEEeCC--CCCcceEEEEEEEEee
Q 036009 85 FELKHEGVMF-GDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNP--DGKPNGVLTFSYKVNG 143 (318)
Q Consensus 85 feV~d~d~~~-~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~--sGk~~G~L~ls~kf~~ 143 (318)
|+|||++.+. +|++||++.|+|.++.... .....||.|.++ .++.+|+|.|++.|+.
T Consensus 68 ~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~--~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 68 VYVYNDRRSGRRRSFLGRVRISGTSFVPPS--EAVVQRYPLEKRGLFSRVRGEIGLKVYITD 127 (127)
T ss_pred EEEeeCCCCcCCCCeeeEEEEcHHHcCCCC--CccceEeEeeeCCCCCCccEEEEEEEEEcC
Confidence 9999998876 8999999999999998432 235678888765 3568999999999863
No 7
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.84 E-value=3.4e-20 Score=160.70 Aligned_cols=127 Identities=18% Similarity=0.275 Sum_probs=105.1
Q ss_pred eEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEE
Q 036009 5 SLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVH 84 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~ 84 (318)
.|+|+|++|++|...+.++++||||+|++.+ +++||+++++++.||+|||+|.|.+.+.. ...|.
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~----------~~~kTk~~~~~t~nP~WNE~F~f~v~~~~-----~~~l~ 65 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN----------QVLRTRPSQTRNGNPSWNEELMFVAAEPF-----EDHLI 65 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECC----------EEeeeEeccCCCCCCcccCcEEEEecCcc-----CCeEE
Confidence 3899999999999999999999999999963 58899998765699999999999986531 24689
Q ss_pred EEEeecCcCCCCcEEEEEEEeCcccccccC-ceeEEEEEEEeCCCC--------CcceEEEEEEEEeecCC
Q 036009 85 FELKHEGVMFGDKTIGEVRVPIKDLISEFN-GVVRFVDYEVRNPDG--------KPNGVLTFSYKVNGMNS 146 (318)
Q Consensus 85 feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~-g~~~~~sy~Lr~~sG--------k~~G~L~ls~kf~~~~~ 146 (318)
|+|+|.+.+++|++||++.|+|+++..+.+ +.....||.|.+..| +.+|.|+|.+.|....+
T Consensus 66 v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~ 136 (150)
T cd04019 66 LSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYH 136 (150)
T ss_pred EEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcce
Confidence 999999888889999999999999876422 234578999987654 56799999999985443
No 8
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.83 E-value=7.1e-20 Score=153.02 Aligned_cols=128 Identities=28% Similarity=0.399 Sum_probs=103.0
Q ss_pred eEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEE
Q 036009 5 SLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVH 84 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~ 84 (318)
.|+|+|++|++|...+..++.||||+|++.+..... +..+.||+++++ +.||+|||+|.|.+... ...|.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~---~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~------~~~l~ 70 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNG---EIDSVQTKTIKK-TLNPKWNEEFFFRVNPR------EHRLL 70 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCC---cccceeeeEEcC-CCCCcEeeEEEEEEcCC------CCEEE
Confidence 489999999999999988999999999997531100 123679999866 69999999999998653 23689
Q ss_pred EEEeecCcCCCCcEEEEEEEeCcccccccCc---eeEEEEEEEeCC--CCCcceEEEEEEEEe
Q 036009 85 FELKHEGVMFGDKTIGEVRVPIKDLISEFNG---VVRFVDYEVRNP--DGKPNGVLTFSYKVN 142 (318)
Q Consensus 85 feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g---~~~~~sy~Lr~~--sGk~~G~L~ls~kf~ 142 (318)
|+|||++.+.+|++||.+.+++.++.....+ .....||.|... .++.+|+|+|++.|.
T Consensus 71 ~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 71 FEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred EEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 9999999888899999999999999875432 234688888854 567899999999884
No 9
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.83 E-value=1.4e-19 Score=153.10 Aligned_cols=113 Identities=20% Similarity=0.243 Sum_probs=94.5
Q ss_pred eEEEEEEEeec---CCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcce
Q 036009 5 SLEIKVMFGKD---LKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHI 81 (318)
Q Consensus 5 ~L~VtVisA~d---L~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~ 81 (318)
.|+|+|++|++ |+..+.+|++||||+|++.+ ++.||+++++ ++||+|||+|.|.+.+. ..
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~----------~~~rTk~~~~-~~nP~WnE~f~f~v~~~------~~ 63 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP----------KWVRTRTVED-SSNPRWNEQYTWPVYDP------CT 63 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECC----------EEeEcCcccC-CCCCcceeEEEEEecCC------CC
Confidence 48999999999 88889899999999999953 5889999976 58999999999999753 23
Q ss_pred EEEEEEeecCcCC------CCcEEEEEEEeCcccccccCceeEEEEEEEeCCC---CCcceEEEE
Q 036009 82 FVHFELKHEGVMF------GDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPD---GKPNGVLTF 137 (318)
Q Consensus 82 ~L~feV~d~d~~~------~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~s---Gk~~G~L~l 137 (318)
.|.|+|||++.++ +|++||++.|+|.++..+. ....||+|++.+ ++..|.|++
T Consensus 64 ~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~---~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 64 VLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDR---VYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred EEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCC---EEeeEEEeEeCCCCCccCCcEEEe
Confidence 6999999998763 8999999999999987653 457899998754 445677764
No 10
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.82 E-value=4.1e-19 Score=148.10 Aligned_cols=120 Identities=19% Similarity=0.254 Sum_probs=99.5
Q ss_pred EEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEE
Q 036009 6 LEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHF 85 (318)
Q Consensus 6 L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~f 85 (318)
|.|+|++|++|.. .++++||||+|++... ..+.||+++++ +.||+|||+|.|.+... ...|.|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~--------~~~~kT~v~~~-t~nP~Wne~f~f~~~~~------~~~l~~ 63 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEP--------PQKYQSSTQKN-TSNPFWDEHFLFELSPN------SKELLF 63 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCC--------CcEEEeEEEec-CCCCccCceEEEEeCCC------CCEEEE
Confidence 6799999999988 6789999999999631 24789999876 58999999999998642 246999
Q ss_pred EEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCC---CCCcceEEEEEEEEeecC
Q 036009 86 ELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNP---DGKPNGVLTFSYKVNGMN 145 (318)
Q Consensus 86 eV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~---sGk~~G~L~ls~kf~~~~ 145 (318)
+|||++.+++|++||++.|+|.++..... ...++.|..+ +++.+|.|.+.+.|....
T Consensus 64 ~v~d~~~~~~~~~lG~~~i~l~~l~~~~~---~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 64 EVYDNGKKSDSKFLGLAIVPFDELRKNPS---GRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred EEEECCCCCCCceEEEEEEeHHHhccCCc---eeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 99999988889999999999999987653 2467888755 345799999999998765
No 11
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.81 E-value=6.2e-19 Score=144.23 Aligned_cols=116 Identities=22% Similarity=0.324 Sum_probs=98.4
Q ss_pred ceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEE
Q 036009 4 SSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFV 83 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L 83 (318)
+.|+|+|++|++|...+.++.+||||+|.+.+ .+.+|+++++ +.||+|||+|.|.+.+. ...|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~----------~~~~T~~~~~-t~nP~W~e~f~~~~~~~------~~~l 63 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN----------ARLQTHTIYK-TLNPEWNKIFTFPIKDI------HDVL 63 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC----------EeeecceecC-CcCCccCcEEEEEecCc------CCEE
Confidence 57999999999999999889999999999963 3679999876 58999999999998642 2469
Q ss_pred EEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCC--CCcceEEEEEEEE
Q 036009 84 HFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPD--GKPNGVLTFSYKV 141 (318)
Q Consensus 84 ~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~s--Gk~~G~L~ls~kf 141 (318)
.|+|||++.+.+|++||++.++|.++..+. ..||.|++.. ++.+|.|.|++.|
T Consensus 64 ~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~-----~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 64 EVTVYDEDKDKKPEFLGKVAIPLLSIKNGE-----RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred EEEEEECCCCCCCceeeEEEEEHHHCCCCC-----ceEEECcccCCCCceeeEEEEEEEe
Confidence 999999998788999999999999986532 3688887653 5579999999887
No 12
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.81 E-value=5.9e-19 Score=145.40 Aligned_cols=116 Identities=18% Similarity=0.303 Sum_probs=96.0
Q ss_pred EEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEE
Q 036009 6 LEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHF 85 (318)
Q Consensus 6 L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~f 85 (318)
|.|+|++|++|+..+.++++||||+|.+.+. . ..+.||+++++ +.||+|||+|.|.+.... ...|.|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~-~------~~~~kT~vv~~-t~nP~Wne~f~f~i~~~~-----~~~l~v 68 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTA-S------DEKKRTKTIKN-SINPVWNETFEFRIQSQV-----KNVLEL 68 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCC-C------CccCccceecC-CCCCccceEEEEEeCccc-----CCEEEE
Confidence 7899999999999988899999999999642 1 24789999976 589999999999987531 246999
Q ss_pred EEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCCcceEEEEEEEE
Q 036009 86 ELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKPNGVLTFSYKV 141 (318)
Q Consensus 86 eV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~~G~L~ls~kf 141 (318)
+|||++.+ +|++||++.++|.++..+. ....+++|.. +.+|.|++.+.+
T Consensus 69 ~v~d~d~~-~~~~iG~~~~~l~~l~~g~---~~~~~~~L~~---~~~g~l~~~~~~ 117 (119)
T cd04036 69 TVMDEDYV-MDDHLGTVLFDVSKLKLGE---KVRVTFSLNP---QGKEELEVEFLL 117 (119)
T ss_pred EEEECCCC-CCcccEEEEEEHHHCCCCC---cEEEEEECCC---CCCceEEEEEEe
Confidence 99999987 9999999999999987653 3568888864 347888888765
No 13
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.80 E-value=4.6e-19 Score=147.78 Aligned_cols=116 Identities=18% Similarity=0.235 Sum_probs=96.3
Q ss_pred EEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEE
Q 036009 6 LEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHF 85 (318)
Q Consensus 6 L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~f 85 (318)
|.|+|++|++|... ++||||+|.+.+ .+.||+++++ +.||+|||+|.|.+... ....|.|
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~----------~~~kT~v~~~-t~nP~Wne~F~f~~~~~-----~~~~L~~ 61 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGN----------YKGSTKAIER-TSNPEWNQVFAFSKDRL-----QGSTLEV 61 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECC----------ccccccccCC-CCCCccceEEEEEcCCC-----cCCEEEE
Confidence 78999999999877 689999999963 4789999876 58999999999998652 1357999
Q ss_pred EEeecCcCCCCcEEEEEEEeCcccccccC--ceeEEEEEEEeCCC-CCcceEEEEEEEEe
Q 036009 86 ELKHEGVMFGDKTIGEVRVPIKDLISEFN--GVVRFVDYEVRNPD-GKPNGVLTFSYKVN 142 (318)
Q Consensus 86 eV~d~d~~~~Dd~IG~a~VpLsdLl~~~~--g~~~~~sy~Lr~~s-Gk~~G~L~ls~kf~ 142 (318)
+|||++.+ +|++||.+.++|+++..... +.....||.|.+.+ ++.+|+|.|+++|.
T Consensus 62 ~v~d~d~~-~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 62 SVWDKDKA-KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred EEEeCCCC-cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 99999865 89999999999999876432 22346899998765 46799999999996
No 14
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.80 E-value=4.9e-19 Score=145.35 Aligned_cols=122 Identities=20% Similarity=0.287 Sum_probs=98.5
Q ss_pred ceEEEEEEEeecCCCCCC-CCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 4 SSLEIKVMFGKDLKAFNF-FQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~-~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
+.|+|+|++|++|+..+. .+.+||||+|++.+. ..+.||+++++ +.||+|||.|.|.+... ...
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~--------~~~~kT~~~~~-~~~P~Wne~~~~~v~~~------~~~ 66 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR--------RELARTKVKKD-TSNPVWNETKYILVNSL------TEP 66 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC--------CcceEeeeecC-CCCCcceEEEEEEeCCC------CCE
Confidence 689999999999997664 367999999999741 14789999876 68999999999998732 347
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCCcceEEEEEEEEee
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKPNGVLTFSYKVNG 143 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~~G~L~ls~kf~~ 143 (318)
|.|+|||.+.+.+|++||.+.++|.++..... .+..++.|. .++|.+|+|+|+++|.+
T Consensus 67 l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~--~~~~~~~~~-~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 67 LNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPE--QENLTKNLL-RNGKPVGELNYDLRFFP 124 (124)
T ss_pred EEEEEEecCCCCCCceeEEEEEEHHHhccCcc--ccCcchhhh-cCCccceEEEEEEEeCC
Confidence 99999999988889999999999999997643 222334443 47888999999999864
No 15
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.80 E-value=6.6e-19 Score=145.71 Aligned_cols=117 Identities=19% Similarity=0.183 Sum_probs=96.9
Q ss_pred eEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEE
Q 036009 5 SLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVH 84 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~ 84 (318)
+|+|+|++|++|...+.++.+||||+|++.+ .+.+|+++++ +.||+|||+|.|.+.... ...|.
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~----------~~~kT~v~~~-t~nP~Wne~f~f~~~~~~-----~~~l~ 64 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNG----------QTLETSVVKK-SCYPRWNEVFEFELMEGA-----DSPLS 64 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECC----------EEEeceeecC-CCCCccCcEEEEEcCCCC-----CCEEE
Confidence 4899999999999998888999999999853 4689999876 589999999999997631 34699
Q ss_pred EEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeC------CCCCcceEEEEEEE
Q 036009 85 FELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRN------PDGKPNGVLTFSYK 140 (318)
Q Consensus 85 feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~------~sGk~~G~L~ls~k 140 (318)
|+|||++.++.|++||.+.++|.++..... ...||.|.. ++++..|.|.|.++
T Consensus 65 ~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~---~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 65 VEVWDWDLVSKNDFLGKVVFSIQTLQQAKQ---EEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred EEEEECCCCCCCcEeEEEEEEHHHcccCCC---CCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 999999988889999999999999876432 346787775 35667899988764
No 16
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.80 E-value=1.5e-18 Score=147.81 Aligned_cols=120 Identities=23% Similarity=0.319 Sum_probs=98.0
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
.+.|.|+|++|++|...+.++++||||+|.+.. .++||+++++ +.||.|||+|.|.+.+.. ...
T Consensus 14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~----------~~~kT~vi~~-t~nP~Wne~f~f~v~~~~-----~~~ 77 (136)
T cd08375 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS----------QEHKTKVVSD-TLNPKWNSSMQFFVKDLE-----QDV 77 (136)
T ss_pred cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC----------EeeeccccCC-CCCCccCceEEEEecCcc-----CCE
Confidence 478999999999999999889999999999953 5789999876 599999999999996531 347
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCcccccccCc--eeEEEEEEEeCCCCCcceEEEEEEEE
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKDLISEFNG--VVRFVDYEVRNPDGKPNGVLTFSYKV 141 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g--~~~~~sy~Lr~~sGk~~G~L~ls~kf 141 (318)
|.|+|||++.+.+|++||.+.|+|.++...... ..-..+..| +++.+|+|.|++.|
T Consensus 78 l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~---~~~~~g~i~l~~~~ 135 (136)
T cd08375 78 LCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL---HEVPTGEVVVKLDL 135 (136)
T ss_pred EEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc---ccccceeEEEEEEe
Confidence 999999999888899999999999999874321 112344444 36778999999887
No 17
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.80 E-value=1.3e-18 Score=144.51 Aligned_cols=119 Identities=23% Similarity=0.235 Sum_probs=97.0
Q ss_pred eEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEE
Q 036009 5 SLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVH 84 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~ 84 (318)
.|.|+|++|++|...+.++++||||+|.+.+ ....||+++++ +.||+|||.|.|.+... ...|.
T Consensus 1 ~l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~---------~~~~kT~v~~~-t~nP~Wne~f~~~~~~~------~~~l~ 64 (121)
T cd04054 1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVDN---------EVIIRTATVWK-TLNPFWGEEYTVHLPPG------FHTVS 64 (121)
T ss_pred CEEEEEEEeeCCcCCCCCCCCCceEEEEECC---------EeeeeeeeEcC-CCCCcccceEEEeeCCC------CCEEE
Confidence 3899999999999999899999999999964 23579999877 59999999999998652 24799
Q ss_pred EEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeC--CCCCcceEEEEEEEE
Q 036009 85 FELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRN--PDGKPNGVLTFSYKV 141 (318)
Q Consensus 85 feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~--~sGk~~G~L~ls~kf 141 (318)
|+|||++.+++|++||++.+.+.++..... ....|+.|+. .+++..|+|+|.+++
T Consensus 65 v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~--~~~~W~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd04054 65 FYVLDEDTLSRDDVIGKVSLTREVISAHPR--GIDGWMNLTEVDPDEEVQGEIHLELSV 121 (121)
T ss_pred EEEEECCCCCCCCEEEEEEEcHHHhccCCC--CCCcEEECeeeCCCCccccEEEEEEEC
Confidence 999999988899999999999988865322 1246777754 456678999998763
No 18
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.79 E-value=1.7e-18 Score=144.39 Aligned_cols=118 Identities=19% Similarity=0.263 Sum_probs=96.8
Q ss_pred eEEEEEEEeecCCCCC-CCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEE
Q 036009 5 SLEIKVMFGKDLKAFN-FFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFV 83 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d-~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L 83 (318)
.|.|+|++|++|+..+ ..+.+||||+|.+.+ ....||+++++ +.||+|||+|.|.+.+. ...|
T Consensus 1 ~l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~---------~~~~kT~v~~k-t~~P~WnE~F~f~v~~~------~~~l 64 (121)
T cd08401 1 SLKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQ---------EEVFRTKTVEK-SLCPFFGEDFYFEIPRT------FRHL 64 (121)
T ss_pred CeEEEEEEccCCCCCCCCCCCcCcEEEEEECC---------ccEEEeeEEEC-CCCCccCCeEEEEcCCC------CCEE
Confidence 3789999999999864 357899999999953 24689999876 69999999999999753 2479
Q ss_pred EEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeC--CCCCcceEEEEEEEE
Q 036009 84 HFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRN--PDGKPNGVLTFSYKV 141 (318)
Q Consensus 84 ~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~--~sGk~~G~L~ls~kf 141 (318)
.|+|||++.+.+|++||.+.++|+++.... ....||.|.. .+++..|.|+|+++|
T Consensus 65 ~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~---~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 65 SFYIYDRDVLRRDSVIGKVAIKKEDLHKYY---GKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEECCCCCCCceEEEEEEEHHHccCCC---CcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 999999999889999999999999987643 2457787764 356679999999875
No 19
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.79 E-value=2.4e-18 Score=140.61 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=96.9
Q ss_pred eEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEE
Q 036009 5 SLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVH 84 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~ 84 (318)
+|+|+|++|++|+..+.++..||||+|++.+ .+.||+++++ +.||+|||+|.|.+.+. ....|.
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~----------~~~kT~v~~~-t~nP~Wne~f~f~~~~~-----~~~~l~ 64 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGN----------EKYKSKVCSK-TLNPQWLEQFDLHLFDD-----QSQILE 64 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECC----------EeEecccccC-CCCCceeEEEEEEecCC-----CCCEEE
Confidence 4899999999999999889999999999953 4789999876 69999999999998753 135799
Q ss_pred EEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCCcceEEEEEEEEe
Q 036009 85 FELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKPNGVLTFSYKVN 142 (318)
Q Consensus 85 feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~~G~L~ls~kf~ 142 (318)
|+|||++.+.+|++||.+.++|+++..+. ....|+.|... +|.|+|.+.++
T Consensus 65 v~v~d~~~~~~~~~iG~~~~~l~~l~~~~---~~~~w~~L~~~----~G~~~~~~~~~ 115 (116)
T cd08376 65 IEVWDKDTGKKDEFIGRCEIDLSALPREQ---THSLELELEDG----EGSLLLLLTLT 115 (116)
T ss_pred EEEEECCCCCCCCeEEEEEEeHHHCCCCC---ceEEEEEccCC----CcEEEEEEEec
Confidence 99999998888999999999999987643 35788998752 58898887764
No 20
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.79 E-value=9.9e-19 Score=146.69 Aligned_cols=112 Identities=19% Similarity=0.213 Sum_probs=88.0
Q ss_pred eEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEE
Q 036009 5 SLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVH 84 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~ 84 (318)
+|+|+|++|++|+..+ .|.+||||+|+|.+..... +++++||++++ +++||+|||+|.|.+.... +.....|+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~---k~~k~kTkv~~-~tlnPvwNE~f~F~v~~~~--~~~~~~L~ 73 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSD---KKRKFATKSKN-NNWSPKYNETFQFILGNED--DPESYELH 73 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcc---cccEeeeEEec-CCCCCccCcEEEEEeeCcC--CCceeEEE
Confidence 5899999999999887 5899999999986411000 23567899985 5799999999999997542 12246799
Q ss_pred EEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeC
Q 036009 85 FELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRN 126 (318)
Q Consensus 85 feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~ 126 (318)
|+|+|++.+.+|++||++.|+|+++..+. ....|+.|..
T Consensus 74 ~~V~D~d~~~~dd~IG~~~l~l~~~~~~~---~~~~w~~L~~ 112 (120)
T cd08395 74 ICVKDYCFARDDRLVGVTVLQLRDIAQAG---SCACWLPLGR 112 (120)
T ss_pred EEEEEecccCCCCEEEEEEEEHHHCcCCC---cEEEEEECcC
Confidence 99999987667999999999999998654 2467888754
No 21
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.79 E-value=1.5e-18 Score=151.36 Aligned_cols=119 Identities=21% Similarity=0.338 Sum_probs=97.5
Q ss_pred ceEEEEEEEeecCCCCC------------------------------CCCccCeEEEEEEecCCCcchhcCCceEEcccc
Q 036009 4 SSLEIKVMFGKDLKAFN------------------------------FFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTD 53 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d------------------------------~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~ 53 (318)
|+|+|+|++|++|.+.| ..+++||||+|++.+ .+..||+++
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~---------~~~~rT~v~ 77 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG---------ARVARTRVI 77 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC---------eEeeEEEEe
Confidence 78999999999999876 246689999999964 235799998
Q ss_pred cCCCCCCeEeeEEEEEccCcccCCCcceEEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCC---
Q 036009 54 KEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGK--- 130 (318)
Q Consensus 54 k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk--- 130 (318)
++ +.||+|||+|.|.+... ...|.|+|+|++.+ ++++||.+.|+|.++..+. ....||+|.+.+++
T Consensus 78 ~~-~~nP~WnE~F~~~~~~~------~~~l~~~V~d~d~~-~~~~IG~~~i~l~~l~~g~---~~~~w~~L~~~~~~~~~ 146 (158)
T cd04015 78 EN-SENPVWNESFHIYCAHY------ASHVEFTVKDNDVV-GAQLIGRAYIPVEDLLSGE---PVEGWLPILDSNGKPPK 146 (158)
T ss_pred CC-CCCCccceEEEEEccCC------CCEEEEEEEeCCCc-CCcEEEEEEEEhHHccCCC---CcceEEECcCCCCCCCC
Confidence 76 59999999999998653 24699999999865 6789999999999988643 35689999887665
Q ss_pred cceEEEEEEEEe
Q 036009 131 PNGVLTFSYKVN 142 (318)
Q Consensus 131 ~~G~L~ls~kf~ 142 (318)
..|.|+|+++|.
T Consensus 147 ~~~~l~v~~~f~ 158 (158)
T cd04015 147 PGAKIRVSLQFT 158 (158)
T ss_pred CCCEEEEEEEEC
Confidence 357999999984
No 22
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.79 E-value=2e-18 Score=144.28 Aligned_cols=118 Identities=14% Similarity=0.221 Sum_probs=96.2
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
...|+|+|++|++|...+.++++||||+|.+.+ +++||+++++ +.||+|||.|.|.+.+. ...
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~----------~~~kT~v~~~-t~nP~Wne~f~f~~~~~------~~~ 64 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG----------ESVRSPVQKD-TLSPEFDTQAIFYRKKP------RSP 64 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECC----------EEEEeCccCC-CCCCcccceEEEEecCC------CCE
Confidence 467999999999999999889999999999864 4789999876 59999999999987652 357
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEe----CCCCCcceEEEEEEEEee
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVR----NPDGKPNGVLTFSYKVNG 143 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr----~~sGk~~G~L~ls~kf~~ 143 (318)
|.|+|||++.+ +|++||.+.+++.++.... ..++.|. +.+++..|.|.|++...+
T Consensus 65 l~i~V~d~~~~-~d~~lG~~~~~l~~~~~~~-----~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 65 IKIQVWNSNLL-CDEFLGQATLSADPNDSQT-----LRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred EEEEEEECCCC-CCCceEEEEEecccCCCcC-----ceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 99999998865 6899999999998754322 2445553 356888999999987764
No 23
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.79 E-value=3.4e-19 Score=156.65 Aligned_cols=96 Identities=26% Similarity=0.431 Sum_probs=86.4
Q ss_pred CCCceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcc
Q 036009 1 MESSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGH 80 (318)
Q Consensus 1 M~~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~ 80 (318)
|.-+.|+|+|++|.+|...|+.+++||||+|.+.+ ++.||+++++ ++||+|||+|.|.+.+. .
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~----------q~lkT~~v~~-n~NPeWNe~ltf~v~d~------~ 65 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN----------QKLKTRVVYK-NLNPEWNEELTFTVKDP------N 65 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECC----------eeeeeeeecC-CCCCcccceEEEEecCC------C
Confidence 34588999999999999999779999999999963 6999999876 59999999999999975 4
Q ss_pred eEEEEEEeecCcCCCCcEEEEEEEeCccccccc
Q 036009 81 IFVHFELKHEGVMFGDKTIGEVRVPIKDLISEF 113 (318)
Q Consensus 81 ~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~ 113 (318)
..|.++|||+|.+.+||+||.|+|+|..++...
T Consensus 66 ~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 66 TPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred ceEEEEEEeCCCCCcccccceeeeccHHHHHHh
Confidence 579999999999999999999999999998754
No 24
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.79 E-value=1.2e-18 Score=145.52 Aligned_cols=109 Identities=18% Similarity=0.234 Sum_probs=89.0
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEc-cCcccCCCcce
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDL-KGILFHDCGHI 81 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v-~~~~l~d~~~~ 81 (318)
.+.|.|+|++|++|...+ .+.+||||+|++.++.. +..++||+++++ +.||+|||+|.|.+ ....+ ...
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~-----~~~~~kT~v~~~-~~nP~wnE~F~f~~~~~~~l---~~~ 81 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQ-----KTTKRKTKVVRK-TRNPTFNEMLVYDGLPVEDL---QQR 81 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCc-----cCCceeCCccCC-CCCCCcccEEEEecCChHHh---CCC
Confidence 468999999999999999 88999999999986421 245889999976 59999999999997 33222 246
Q ss_pred EEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEE
Q 036009 82 FVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEV 124 (318)
Q Consensus 82 ~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~L 124 (318)
.|.|+|||++.+.+|++||++.|+|+++.... ....||.|
T Consensus 82 ~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~---~~~~W~~L 121 (122)
T cd08381 82 VLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQ---ETEKWYPL 121 (122)
T ss_pred EEEEEEEeCCCCcCCcEEEEEEEeccccccCC---CccceEEC
Confidence 89999999999889999999999999987543 23567765
No 25
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.79 E-value=1.3e-18 Score=146.93 Aligned_cols=113 Identities=24% Similarity=0.318 Sum_probs=92.5
Q ss_pred CceEEEEEEEeecCCCCCCC-CccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcce
Q 036009 3 SSSLEIKVMFGKDLKAFNFF-QKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHI 81 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~-gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~ 81 (318)
.+.|.|+|++|++|...+.. +..||||+|++..+.. +..++||+++++ +.||+|||+|.|.+....+. ..
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~-----~~~k~kT~v~~~-t~nPvfNE~F~f~v~~~~l~---~~ 84 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKS-----HNSKRKTAVKKG-TVNPVFNETLKYVVEADLLS---SR 84 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCc-----ccceeecccccC-CCCCccceEEEEEcCHHHhC---Cc
Confidence 57899999999999988864 8999999999985421 135789999976 59999999999998765443 46
Q ss_pred EEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEE
Q 036009 82 FVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEV 124 (318)
Q Consensus 82 ~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~L 124 (318)
.|.|.|||.+.+.++++||++.|+|+++.-...+.....||.|
T Consensus 85 ~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 85 QLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 8999999999888999999999999998554323456788876
No 26
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.79 E-value=3.2e-18 Score=143.35 Aligned_cols=119 Identities=21% Similarity=0.211 Sum_probs=95.7
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
.+.|+|+|++|+||+.. +.+||||+|.+.+ .++.||++. + +.||+|||+|.|.+.... ...
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~---------~~~~kT~v~-~-~~nP~WnE~f~f~~~~~~-----~~~ 63 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNE---------VKVARTKVR-E-GPNPVWSEEFVFDDLPPD-----VNS 63 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECC---------EeEEEeecC-C-CCCCccCCEEEEecCCCC-----cCE
Confidence 46899999999999875 3689999999963 245789874 4 589999999999865431 135
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCC---CCcceEEEEEEEEee
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPD---GKPNGVLTFSYKVNG 143 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~s---Gk~~G~L~ls~kf~~ 143 (318)
|+|+|+|++.+.+|++||++.|+|.++..+. ....||.|...+ .+..|.|+|+++|..
T Consensus 64 l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~---~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 64 FTISLSNKAKRSKDSEIAEVTVQLSKLQNGQ---ETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEEEECCCCCCCCeEEEEEEEHhHccCCC---cccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 8899999998889999999999999987643 346789887653 345799999999975
No 27
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.78 E-value=2.1e-18 Score=142.61 Aligned_cols=122 Identities=18% Similarity=0.257 Sum_probs=99.0
Q ss_pred ceEEEEEEEeecCCCCCC--CCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcce
Q 036009 4 SSLEIKVMFGKDLKAFNF--FQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHI 81 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~--~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~ 81 (318)
+.|.|+|++|++|...+. ++.+||||+|.+.. .+.||+++++ +.||+|||+|.|.+... ...
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~----------~~~kT~~~~~-t~~P~Wne~f~~~~~~~-----~~~ 64 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA----------QRFKTQTIPN-TLNPKWNYWCEFPIFSA-----QNQ 64 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECC----------EEEecceecC-CcCCccCCcEEEEecCC-----CCC
Confidence 579999999999999887 88999999999852 4789999876 59999999999999752 135
Q ss_pred EEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCC----CCcceEEEEEEEE
Q 036009 82 FVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPD----GKPNGVLTFSYKV 141 (318)
Q Consensus 82 ~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~s----Gk~~G~L~ls~kf 141 (318)
.|.|+|||++.+.+|++||.+.|+|.++...........||.|.+.+ ++..|+|+|.+.+
T Consensus 65 ~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 65 LLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred EEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 79999999998888999999999999988532222345788887652 3468999988753
No 28
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.78 E-value=1.1e-18 Score=146.30 Aligned_cols=96 Identities=14% Similarity=0.223 Sum_probs=81.8
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
.+.|.|+|++|++|+ ..+.+||||+|+|..++ +..+++|+|+++ ++||+|||+|.|.|....+. ...
T Consensus 13 ~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~------k~~k~kT~v~rk-tlnPvfnE~f~F~v~~~~l~---~~t 79 (118)
T cd08677 13 KAELHVNILEAENIS---VDAGCECYISGCVSVSE------GQKEAQTALKKL-ALHTQWEEELVFPLPEEESL---DGT 79 (118)
T ss_pred CCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCc------CccEEEcceecC-CCCCccccEEEEeCCHHHhC---CcE
Confidence 578999999999999 24669999999997532 235789999876 69999999999999876554 568
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCccccc
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKDLIS 111 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsdLl~ 111 (318)
|.|.|||.|++++|++||++.++++++..
T Consensus 80 L~~~V~d~Drfs~~d~IG~v~l~l~~~~~ 108 (118)
T cd08677 80 LTLTLRCCDRFSRHSTLGELRLKLADVSM 108 (118)
T ss_pred EEEEEEeCCCCCCCceEEEEEEccccccC
Confidence 99999999999999999999999998643
No 29
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.78 E-value=3.3e-18 Score=142.45 Aligned_cols=116 Identities=14% Similarity=0.290 Sum_probs=94.6
Q ss_pred eEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEE
Q 036009 5 SLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVH 84 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~ 84 (318)
.|+|+|++|++|...+.++++||||+|++.+ .+++||+++++ +.||+|||+|.|.+.. ...|.
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~---------~~~~kT~v~~~-t~nP~Wne~f~~~~~~-------~~~l~ 63 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDG---------GQTHSTDVAKK-TLDPKWNEHFDLTVGP-------SSIIT 63 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECC---------ccceEccEEcC-CCCCcccceEEEEeCC-------CCEEE
Confidence 4899999999999999889999999999964 25789999876 5899999999999964 24799
Q ss_pred EEEeecCcCCC--CcEEEEEEEeCcccccccCceeEEEEEEEeCC----CCCcceEEEEEE
Q 036009 85 FELKHEGVMFG--DKTIGEVRVPIKDLISEFNGVVRFVDYEVRNP----DGKPNGVLTFSY 139 (318)
Q Consensus 85 feV~d~d~~~~--Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~----sGk~~G~L~ls~ 139 (318)
|+|||++.+.. |++||++.++|.+++....+ ...||.|+.. .++..|.|.+++
T Consensus 64 i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 64 IQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDT--GYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EEEEECCCCCCCCCceEeEEEEEHHHccccCCC--ccceeEeecCCCCCCceEeeEEEEEe
Confidence 99999988765 57999999999999875432 2347777654 355688887765
No 30
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.77 E-value=9e-18 Score=139.85 Aligned_cols=120 Identities=20% Similarity=0.239 Sum_probs=100.2
Q ss_pred EEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEEEEee
Q 036009 10 VMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKH 89 (318)
Q Consensus 10 VisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~feV~d 89 (318)
|++|++|.. .++++||||+|.+.+ .++||+++++ +.||+|||+|.|.+..... ....|.|+|||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~----------~~~kT~v~~~-~~nP~Wne~f~f~~~~~~~---~~~~l~~~v~d 65 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRG----------VKKKTRVLEN-ELNPVWNETFEWPLAGSPD---PDESLEIVVKD 65 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECC----------EeeecceeCC-CcCCcccceEEEEeCCCcC---CCCEEEEEEEE
Confidence 799999998 678999999999953 4789999976 5899999999999975321 14579999999
Q ss_pred cCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCC-cceEEEEEEEEeecCCCC
Q 036009 90 EGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGK-PNGVLTFSYKVNGMNSAI 148 (318)
Q Consensus 90 ~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk-~~G~L~ls~kf~~~~~~~ 148 (318)
++.+++|++||.+.++|+++..+. ....+++|.+.+++ .+|+|+|++.|.+...+.
T Consensus 66 ~~~~~~d~~iG~~~~~l~~l~~~~---~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~~ 122 (127)
T cd08373 66 YEKVGRNRLIGSATVSLQDLVSEG---LLEVTEPLLDSNGRPTGATISLEVSYQPPDGAV 122 (127)
T ss_pred CCCCCCCceEEEEEEEhhHcccCC---ceEEEEeCcCCCCCcccEEEEEEEEEeCCCCcc
Confidence 998888999999999999998653 35678999877666 489999999999876654
No 31
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.77 E-value=8.8e-18 Score=140.95 Aligned_cols=120 Identities=21% Similarity=0.323 Sum_probs=98.3
Q ss_pred CCCceEEEEEEEeecCCCCCCC----------CccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEc
Q 036009 1 MESSSLEIKVMFGKDLKAFNFF----------QKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDL 70 (318)
Q Consensus 1 M~~~~L~VtVisA~dL~~~d~~----------gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v 70 (318)
|-++.|+|+|++|++|+..+.. +..||||+|.+.+ .+..||+++++ +.||+|||+|.|.+
T Consensus 1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~---------~~~~kT~~~~~-t~~P~Wne~f~~~v 70 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD---------THIGKTSTKPK-TNSPVWNEEFTTEV 70 (132)
T ss_pred CcceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC---------EEEeEEeEcCC-CCCCCcceeEEEEc
Confidence 6678999999999999988752 5789999999964 24578998766 69999999999999
Q ss_pred cCcccCCCcceEEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCCcceEEEEEEEEee
Q 036009 71 KGILFHDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKPNGVLTFSYKVNG 143 (318)
Q Consensus 71 ~~~~l~d~~~~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~~G~L~ls~kf~~ 143 (318)
.+ ...|.|+|+|++.+..|++||.+.++|.++.... +.....|+.|. +.|.|+|.+++..
T Consensus 71 ~~-------~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~-~~~~~~w~~L~-----~~G~l~l~~~~~~ 130 (132)
T cd04014 71 HN-------GRNLELTVFHDAAIGPDDFVANCTISFEDLIQRG-SGSFDLWVDLE-----PQGKLHVKIELKG 130 (132)
T ss_pred CC-------CCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccC-CCcccEEEEcc-----CCcEEEEEEEEec
Confidence 63 2469999999888888999999999999998741 12346788875 5799999998875
No 32
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.77 E-value=6.3e-18 Score=139.82 Aligned_cols=109 Identities=23% Similarity=0.267 Sum_probs=90.3
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
.+.|.|+|++|++|...+..+..||||+|.+.+.. ..++||+++++ +.||+|||+|.|.+....+. ...
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~-------~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~---~~~ 83 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK-------KKKFETKVHRK-TLNPVFNETFTFKVPYSELG---NKT 83 (124)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCC-------CCceecccCcC-CCCCceeeeEEEeCCHHHhC---CCE
Confidence 57899999999999999888899999999997531 35789999876 58999999999998754332 357
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEe
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVR 125 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr 125 (318)
|.|+|||.+.+.+|++||++.|+|+++..+. ....|++|.
T Consensus 84 l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~---~~~~W~~l~ 123 (124)
T cd08385 84 LVFSVYDFDRFSKHDLIGEVRVPLLTVDLGH---VTEEWRDLE 123 (124)
T ss_pred EEEEEEeCCCCCCCceeEEEEEecCcccCCC---CcceEEEcc
Confidence 9999999998888999999999999986633 345787764
No 33
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.76 E-value=4.3e-18 Score=142.38 Aligned_cols=110 Identities=19% Similarity=0.252 Sum_probs=89.3
Q ss_pred CceEEEEEEEeecCCCCCCC-CccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcce
Q 036009 3 SSSLEIKVMFGKDLKAFNFF-QKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHI 81 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~-gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~ 81 (318)
.+.|.|+|++|++|...+.. +.+||||+|++..+.. +..++||+++++ +.||+|||+|.|.+....+. ..
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~-----~~~~~kT~v~~~-t~nP~~nE~f~f~v~~~~l~---~~ 84 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKS-----NRGKRKTSVKKK-TLNPVFNETLRYKVEREELP---TR 84 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCC-----ccccccCccCcC-CCCCccCceEEEECCHHHhC---CC
Confidence 46899999999999998865 7899999999975321 134689999976 59999999999999765443 35
Q ss_pred EEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEE
Q 036009 82 FVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEV 124 (318)
Q Consensus 82 ~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~L 124 (318)
.|.|+|||.+.+.+|++||++.|+|.++.... ....||.|
T Consensus 85 ~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~---~~~~W~~L 124 (125)
T cd08393 85 VLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSN---TQPTWYPL 124 (125)
T ss_pred EEEEEEEeCCCCCCCcEeEEEEEecCccccCC---CCcceEEC
Confidence 79999999999889999999999999986442 23467765
No 34
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.76 E-value=7e-18 Score=139.75 Aligned_cols=98 Identities=24% Similarity=0.437 Sum_probs=83.6
Q ss_pred ceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEE
Q 036009 4 SSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFV 83 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L 83 (318)
+.|+|+|++|++|+..+.++++||||+|++.+ .+++|+++++++.||+|||+|.|.+...... ....|
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~----------~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~--~~~~l 68 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT----------QERKSKVAKGDGRNPEWNEKFKFTVEYPGWG--GDTKL 68 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECC----------EeeeeeEcCCCCCCCcccceEEEEecCcccC--CCCEE
Confidence 57999999999999999889999999999953 4678888876679999999999999874221 13579
Q ss_pred EEEEeecCcCCCCcEEEEEEEeCccccccc
Q 036009 84 HFELKHEGVMFGDKTIGEVRVPIKDLISEF 113 (318)
Q Consensus 84 ~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~ 113 (318)
.|+|||.+.+.+|++||.+.++|.+++.+.
T Consensus 69 ~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~ 98 (124)
T cd04049 69 ILRIMDKDNFSDDDFIGEATIHLKGLFEEG 98 (124)
T ss_pred EEEEEECccCCCCCeEEEEEEEhHHhhhCC
Confidence 999999998888999999999999998754
No 35
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.76 E-value=9.4e-18 Score=140.61 Aligned_cols=111 Identities=15% Similarity=0.242 Sum_probs=89.4
Q ss_pred CCceEEEEEEEeecCCCCCC-CCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcc
Q 036009 2 ESSSLEIKVMFGKDLKAFNF-FQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGH 80 (318)
Q Consensus 2 ~~~~L~VtVisA~dL~~~d~-~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~ 80 (318)
..+.|.|+|++|++|...+. .+..||||+|++..+.. +..++||+++++ +.||+|||+|.|.+....+. .
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~-----~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~l~---~ 83 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKS-----RQSKRKTSIKRN-TTNPVYNETLKYSISHSQLE---T 83 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCc-----cccceEeeeeeC-CCCCcccceEEEECCHHHhC---C
Confidence 35789999999999998764 47899999999975321 134789999876 69999999999999765442 3
Q ss_pred eEEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEE
Q 036009 81 IFVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEV 124 (318)
Q Consensus 81 ~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~L 124 (318)
..|.|+|||.+.+.+|++||++.|+|.++..... ...||+|
T Consensus 84 ~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~---~~~w~~l 124 (125)
T cd04029 84 RTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQ---HEECLPL 124 (125)
T ss_pred CEEEEEEEECCCCCCCcEEEEEEEeCCcccccCC---cccEEEC
Confidence 5799999999988899999999999999876542 3467765
No 36
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.75 E-value=1.5e-17 Score=140.55 Aligned_cols=126 Identities=20% Similarity=0.231 Sum_probs=98.4
Q ss_pred eEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCc-----ccCCCc
Q 036009 5 SLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGI-----LFHDCG 79 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~-----~l~d~~ 79 (318)
.|+|+|++|++|...+.++..||||+|.+.+ .++||+++++ +.||+|||+|.|.+..- .+.+ .
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~----------~~~kT~v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~-~ 69 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN----------QSQETEVIKE-TLSPTWDQTLIFDEVELYGSPEEIAQ-N 69 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECC----------eeeEeeeEcC-CCCCccCcEEEEeeeeccCChHHhhc-C
Confidence 5899999999999999889999999999963 4789999876 69999999999975321 0100 1
Q ss_pred ceEEEEEEeecCcCCCCcEEEEEEE-eCcccccccCceeEEEEEEEeCCCCCcceEEEEEEEEee
Q 036009 80 HIFVHFELKHEGVMFGDKTIGEVRV-PIKDLISEFNGVVRFVDYEVRNPDGKPNGVLTFSYKVNG 143 (318)
Q Consensus 80 ~~~L~feV~d~d~~~~Dd~IG~a~V-pLsdLl~~~~g~~~~~sy~Lr~~sGk~~G~L~ls~kf~~ 143 (318)
...|.|+|||++.+++|++||++.+ ++..+.....+.....|+.|.+ .++.+|+|.|++.+..
T Consensus 70 ~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~-~~~~~Geil~~~~~~~ 133 (135)
T cd04017 70 PPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK-GGQSAGELLAAFELIE 133 (135)
T ss_pred CCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec-CCCchhheeEEeEEEE
Confidence 2468999999998888999999986 5554444323345678999974 4667999999998865
No 37
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.75 E-value=1.1e-17 Score=138.52 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=90.9
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
.+.|.|+|++|++|...+..+..||||+|.+.... ..++||+++++ +.||+|||+|.|.+....+. ...
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~-------~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l~---~~~ 83 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDR-------SNTKQSKIHKK-TLNPEFDESFVFEVPPQELP---KRT 83 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCC-------CCcEeCceEcC-CCCCCcccEEEEeCCHHHhC---CCE
Confidence 46899999999999999988999999999996321 34789999876 59999999999998765332 357
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEe
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVR 125 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr 125 (318)
|.|+|||.+.+.+|++||++.|+|+++..+. ....||.|.
T Consensus 84 l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~---~~~~W~~l~ 123 (124)
T cd08387 84 LEVLLYDFDQFSRDECIGVVELPLAEVDLSE---KLDLWRKIQ 123 (124)
T ss_pred EEEEEEECCCCCCCceeEEEEEecccccCCC---CcceEEECc
Confidence 9999999998888999999999999998644 346788875
No 38
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.75 E-value=1.3e-17 Score=136.39 Aligned_cols=115 Identities=21% Similarity=0.217 Sum_probs=94.7
Q ss_pred ceEEEEEEEeecCCCCCC------CCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCC
Q 036009 4 SSLEIKVMFGKDLKAFNF------FQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHD 77 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~------~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d 77 (318)
+.|+|+|++|++|...+. .+.+||||+|++.+ .+.||+++++ +.||+|||+|.|.+.+.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~----------~~~kT~~~~~-t~~P~W~e~f~~~v~~~---- 65 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA----------QTFKSKVIKE-NLNPKWNEVYEAVVDEV---- 65 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC----------EeEEccccCC-CCCCcccceEEEEeCCC----
Confidence 579999999999998764 26899999999963 4789999876 68999999999998653
Q ss_pred CcceEEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCCcceEEEEEEEE
Q 036009 78 CGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKPNGVLTFSYKV 141 (318)
Q Consensus 78 ~~~~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~~G~L~ls~kf 141 (318)
....|.|+|||++.+ +|++||.+.++|.++..+. ....||.|.+ ..+|.|+|.++|
T Consensus 66 -~~~~l~i~v~d~~~~-~~~~iG~~~i~l~~l~~~~---~~~~w~~L~~---~~~G~~~~~~~~ 121 (121)
T cd08391 66 -PGQELEIELFDEDPD-KDDFLGRLSIDLGSVEKKG---FIDEWLPLED---VKSGRLHLKLEW 121 (121)
T ss_pred -CCCEEEEEEEecCCC-CCCcEEEEEEEHHHhcccC---ccceEEECcC---CCCceEEEEEeC
Confidence 135799999999876 8999999999999998643 2468888875 257999988764
No 39
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.75 E-value=3.4e-17 Score=135.58 Aligned_cols=121 Identities=14% Similarity=0.200 Sum_probs=96.8
Q ss_pred eEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEE
Q 036009 5 SLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVH 84 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~ 84 (318)
.|+|+|++|++|+..+.++.+||||+|.+.+. . ....||+++++ +.||+|||+|.|.+... ....|.
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~-~------~~~~kT~~~~~-t~~P~Wne~f~f~i~~~-----~~~~L~ 68 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNG-K------RRIAKTRTIYD-TLNPRWDEEFELEVPAG-----EPLWIS 68 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCC-C------eeeecccEecC-CCCCcccceEEEEcCCC-----CCCEEE
Confidence 58999999999999998899999999997532 1 24689999876 59999999999999763 134799
Q ss_pred EEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCCcceEEEEEEEEee
Q 036009 85 FELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKPNGVLTFSYKVNG 143 (318)
Q Consensus 85 feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~~G~L~ls~kf~~ 143 (318)
|+|||++.+.+|++||++.++|.++....++.....|+.|.. +|.|+|.+.+..
T Consensus 69 i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-----~g~i~l~~~~~~ 122 (126)
T cd04043 69 ATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT-----QGRLLLRVSMEG 122 (126)
T ss_pred EEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcCC-----CCeEEEEEEEee
Confidence 999999987789999999999988654332334567888853 688888877764
No 40
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.75 E-value=7.3e-18 Score=137.60 Aligned_cols=107 Identities=16% Similarity=0.227 Sum_probs=89.2
Q ss_pred EEEEEEEeecCCCCCC-CCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeE-eeEEEEEccCcccCCCcceEE
Q 036009 6 LEIKVMFGKDLKAFNF-FQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEW-NHGMQFDLKGILFHDCGHIFV 83 (318)
Q Consensus 6 L~VtVisA~dL~~~d~-~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvW-NEtf~F~v~~~~l~d~~~~~L 83 (318)
|+|+|++|++|+..+. .+..||||+|.+.+ .++||+++++ +.||+| ||+|.|.+....+. ...|
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~----------~~~kT~v~~~-~~nP~W~ne~f~f~i~~~~l~---~~~l 66 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS----------TTYKTDVVKK-SLNPVWNSEWFRFEVDDEELQ---DEPL 66 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC----------eeEecceecC-CCCCcccCcEEEEEcChHHcC---CCeE
Confidence 6899999999998874 68899999999953 4889999976 599999 99999999765332 2479
Q ss_pred EEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeC
Q 036009 84 HFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRN 126 (318)
Q Consensus 84 ~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~ 126 (318)
.|+|||++.+.+|++||++.++|.++.....+.....||.|.+
T Consensus 67 ~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 67 QIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred EEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 9999999988889999999999999988533334568998875
No 41
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.75 E-value=1.8e-17 Score=135.03 Aligned_cols=114 Identities=18% Similarity=0.205 Sum_probs=95.7
Q ss_pred EEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEE
Q 036009 6 LEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHF 85 (318)
Q Consensus 6 L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~f 85 (318)
|+|+|++|++|...+.++..||||+|.+.+ ....+|+++++ +.||+|||+|.|.+... ....|.|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~---------~~~~~T~v~~~-~~~P~Wne~f~~~~~~~-----~~~~l~~ 65 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNG---------EKVFKTKTIKK-TLNPVWNESFEVPVPSR-----VRAVLKV 65 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECC---------CcceeeceecC-CCCCcccccEEEEeccC-----CCCEEEE
Confidence 689999999999988888999999999964 24689999865 69999999999998753 1357999
Q ss_pred EEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCCcceEEEE
Q 036009 86 ELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKPNGVLTF 137 (318)
Q Consensus 86 eV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~~G~L~l 137 (318)
+|||++.+.+|++||++.+++.++..+. ....++.|....+...|+|.|
T Consensus 66 ~v~d~~~~~~~~~iG~~~~~l~~l~~~~---~~~~~~~L~~~g~~~~~~~~~ 114 (115)
T cd04040 66 EVYDWDRGGKDDLLGSAYIDLSDLEPEE---TTELTLPLDGQGGGKLGAVFL 114 (115)
T ss_pred EEEeCCCCCCCCceEEEEEEHHHcCCCC---cEEEEEECcCCCCccCceEEc
Confidence 9999998888999999999999988643 356888998777777888864
No 42
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.74 E-value=2.9e-17 Score=138.22 Aligned_cols=110 Identities=20% Similarity=0.293 Sum_probs=87.0
Q ss_pred CceEEEEEEEeecCCCCCCC-CccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEE-EccCcccCCCcc
Q 036009 3 SSSLEIKVMFGKDLKAFNFF-QKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQF-DLKGILFHDCGH 80 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~-gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F-~v~~~~l~d~~~ 80 (318)
..+|.|+|++|++|+..+.. +..||||+|.+... +.++.||+++++ +.||+|||+|.| .+....+. .
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~-------~~~~~kT~v~~~-t~nP~wnE~F~f~~~~~~~~~---~ 83 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPE-------KEHKVKTRVLRK-TRNPVYDETFTFYGIPYNQLQ---D 83 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCC-------cCceeeccEEcC-CCCCceeeEEEEcccCHHHhC---C
Confidence 56899999999999998876 88999999999753 135789999876 699999999999 45433222 3
Q ss_pred eEEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEE
Q 036009 81 IFVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEV 124 (318)
Q Consensus 81 ~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~L 124 (318)
..|.|+|||++.+.+|++||++.|+|+++.-..++ +-..|+.|
T Consensus 84 ~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~-~~~~~~~~ 126 (128)
T cd08388 84 LSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEG-ELLVSREI 126 (128)
T ss_pred CEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCc-eEEEEEec
Confidence 57999999999888999999999999998665333 23455543
No 43
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.74 E-value=4.9e-17 Score=136.00 Aligned_cols=118 Identities=23% Similarity=0.327 Sum_probs=95.7
Q ss_pred ceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEE
Q 036009 4 SSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFV 83 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L 83 (318)
..|.|+|++|+ |...+.++++||||+|++.+ ..+.||+++++ +.||+|||+|.|.+.. ...|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~---------~~~~kT~v~~~-t~~P~Wne~f~~~~~~-------~~~l 63 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDG---------QPPKKTEVSKK-TSNPKWNEHFTVLVTP-------QSTL 63 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECC---------cccEEeeeeCC-CCCCccccEEEEEeCC-------CCEE
Confidence 46999999999 55555588999999999964 23789999865 6899999999999864 2469
Q ss_pred EEEEeecCcCCCCcEEEEEEEeCcccccccCcee--EEEEEEEeCCC---CCcceEEEEEE
Q 036009 84 HFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVV--RFVDYEVRNPD---GKPNGVLTFSY 139 (318)
Q Consensus 84 ~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~--~~~sy~Lr~~s---Gk~~G~L~ls~ 139 (318)
.|+|||++.+++|++||++.++|.++....++.. ...++.|.+++ ++.+|.|++.+
T Consensus 64 ~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 64 EFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999988899999999999999998655432 34688887653 46799998875
No 44
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.74 E-value=1.9e-17 Score=138.39 Aligned_cols=107 Identities=21% Similarity=0.261 Sum_probs=88.3
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEE-ccCcccCCCcce
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFD-LKGILFHDCGHI 81 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~-v~~~~l~d~~~~ 81 (318)
.+.|.|+|++|+||...+..+..|+||++.+.+. +.++.||+++++ .||+|||+|.|. +....+. ..
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~-------~~~~~kTkv~~~--~nP~fnE~F~f~~i~~~~l~---~~ 82 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPS-------KKQRAKTKVQRG--PNPVFNETFTFSRVEPEELN---NM 82 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccC-------CcceeecccccC--CCCcccCEEEECCCCHHHhc---cC
Confidence 4689999999999999987788999999988653 146889999754 899999999998 6654333 46
Q ss_pred EEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEE
Q 036009 82 FVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEV 124 (318)
Q Consensus 82 ~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~L 124 (318)
.|+|+|||.+.+.++++||++.|+|+++..+. ....||.|
T Consensus 83 ~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~---~~~~w~~L 122 (124)
T cd08389 83 ALRFRLYGVERMRKERLIGEKVVPLSQLNLEG---ETTVWLTL 122 (124)
T ss_pred EEEEEEEECCCcccCceEEEEEEeccccCCCC---CceEEEeC
Confidence 89999999999889999999999999995543 35677766
No 45
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.74 E-value=3.4e-17 Score=135.59 Aligned_cols=110 Identities=16% Similarity=0.213 Sum_probs=89.0
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
.+.|+|+|++|++|...+.++..||||+|.+.+... +..++||+++++ +.||+|||+|.|.+....+. ...
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~-----~~~~~kT~v~~~-~~nP~wne~f~f~i~~~~l~---~~~ 85 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKS-----KSTRRKTSVKKD-NLNPVFDETFEFPVSLEELK---RRT 85 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCC-----CCceEecccccC-CCCCEECeEEEEecCHHHhc---CCE
Confidence 478999999999999999889999999999975321 135889999977 58999999999998764332 357
Q ss_pred EEEEEeecCcC--CCCcEEEEEEEeCcccccccCceeEEEEEEE
Q 036009 83 VHFELKHEGVM--FGDKTIGEVRVPIKDLISEFNGVVRFVDYEV 124 (318)
Q Consensus 83 L~feV~d~d~~--~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~L 124 (318)
|.|+|||.+.+ .+|++||++.|+|.+|.... ....||.|
T Consensus 86 l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~---~~~~W~~L 126 (127)
T cd04030 86 LDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSK---GFTQWYDL 126 (127)
T ss_pred EEEEEEECCcccCCCCceEEEEEEecccccccC---CccceEEC
Confidence 99999998875 57899999999999986543 23567765
No 46
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.74 E-value=2.8e-17 Score=142.47 Aligned_cols=114 Identities=22% Similarity=0.324 Sum_probs=88.1
Q ss_pred eEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCc----------c
Q 036009 5 SLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGI----------L 74 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~----------~ 74 (318)
+|.|+|++|++|.. ..+.+||||+|.+.+... +..++||+++++ +.||+|||+|.|.+... .
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~-----k~~~~kT~v~~~-t~nP~wNE~F~F~v~~~~~~~~~~~~~~ 72 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNK-----KQDTKRTKVKKK-TNNPQFDEAFYFDVTIDSSPEKKQFEMP 72 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcc-----cCcccCCccEeC-CCCCccceEEEEEEecccccccccccCC
Confidence 48999999999998 468899999999986311 135789999876 69999999999998510 1
Q ss_pred cCCCcceEEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCC
Q 036009 75 FHDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPD 128 (318)
Q Consensus 75 l~d~~~~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~s 128 (318)
..+.....|.|+|||++.+.+|+|||++.|+|.++..... ....||.|...+
T Consensus 73 ~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~--~~~~W~~L~~~~ 124 (148)
T cd04010 73 EEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAG--SHQAWYFLQPRE 124 (148)
T ss_pred cccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCC--cCcceeecCCcc
Confidence 1122245799999999988889999999999999886511 236789886643
No 47
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.74 E-value=1.6e-17 Score=136.21 Aligned_cols=95 Identities=13% Similarity=0.211 Sum_probs=80.6
Q ss_pred ceEEEEEEEeecCCCCCCC----CccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCc
Q 036009 4 SSLEIKVMFGKDLKAFNFF----QKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCG 79 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~----gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~ 79 (318)
++|.|+|++|++|+..+.. +..||||+|++.. +++||+++++ +.||+|||+|.|.+.+.. .
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~----------~~~kT~v~~~-t~nPvWne~f~f~v~~~~----~ 65 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR----------RVFRTSWRRH-TLNPVFNERLAFEVYPHE----K 65 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC----------EeEeeeeecC-CCCCcccceEEEEEeCcc----C
Confidence 5799999999999987643 3589999999842 4789999987 599999999999986532 1
Q ss_pred ceEEEEEEeecCcCCCCcEEEEEEEeCccccccc
Q 036009 80 HIFVHFELKHEGVMFGDKTIGEVRVPIKDLISEF 113 (318)
Q Consensus 80 ~~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~ 113 (318)
...|.|+|||++.+++|++||++.++|++|+.+.
T Consensus 66 ~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 66 NFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence 3479999999999889999999999999998764
No 48
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.73 E-value=1.7e-17 Score=135.62 Aligned_cols=100 Identities=20% Similarity=0.197 Sum_probs=83.5
Q ss_pred ceEEEEEEEeecCCCCCCC-CccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 4 SSLEIKVMFGKDLKAFNFF-QKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~-gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
++|+|+|++|++|...+.+ +++||||+|++.+.. +.+.||+++++ +.||+|||+|.|.+....+. ....
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~-------~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~--~~~~ 70 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFG-------KPLYSTRIIRK-DLNPVWEETWFVLVTPDEVK--AGER 70 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCC-------CccEeeeeECC-CCCCccceeEEEEeCchhcc--CCCE
Confidence 5899999999999999887 899999999996421 24689999977 59999999999987653221 1357
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCccccccc
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKDLISEF 113 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~ 113 (318)
|.|+|||++.+.+|++||++.++|.+|....
T Consensus 71 l~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~ 101 (111)
T cd04041 71 LSCRLWDSDRFTADDRLGRVEIDLKELIEDR 101 (111)
T ss_pred EEEEEEeCCCCCCCCcceEEEEEHHHHhcCC
Confidence 9999999999888999999999999998543
No 49
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.73 E-value=7.6e-17 Score=138.10 Aligned_cols=126 Identities=21% Similarity=0.292 Sum_probs=95.8
Q ss_pred eEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcch--h-cCCceEEcccccCCCCCCeE-eeEEEEEccCcccCCCcc
Q 036009 5 SLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKT--L-EQKQKHRTPTDKEGDGNPEW-NHGMQFDLKGILFHDCGH 80 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~--~-~~~~k~KTkv~k~~g~NPvW-NEtf~F~v~~~~l~d~~~ 80 (318)
++.|++++|++|+ .+.++++||||+|++.+...... . ...+++||+++++ ++||+| ||+|.|.+...
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~W~nE~f~f~v~~~------- 72 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVEN-TINPVWHREQFVFVGLPT------- 72 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcC-CCCCceEceEEEEEcCCC-------
Confidence 4789999999998 67789999999999974311000 0 0024789999876 599999 99999998642
Q ss_pred eEEEEEEeecCcCCC---CcEEEEEEEeCcccccccCceeEEEEEEEeCC--CCCcceEEEEEE
Q 036009 81 IFVHFELKHEGVMFG---DKTIGEVRVPIKDLISEFNGVVRFVDYEVRNP--DGKPNGVLTFSY 139 (318)
Q Consensus 81 ~~L~feV~d~d~~~~---Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~--sGk~~G~L~ls~ 139 (318)
..|.|+|||++...+ |++||.+.|+|.+|+......+...+|+|.+. .+..+|+|.|.+
T Consensus 73 ~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 73 DVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred CEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 369999999754332 79999999999999987655456788888765 356789988765
No 50
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.73 E-value=9.8e-17 Score=132.38 Aligned_cols=121 Identities=22% Similarity=0.322 Sum_probs=97.2
Q ss_pred eEEEEEEEeecCCCCC--CCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 5 SLEIKVMFGKDLKAFN--FFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d--~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
.|+|+|++|++|+..+ ..+..||||+|++.+.... +..+.||+++++++.||+|||+|.|.+... ....
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~----~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~-----~~~~ 73 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPAD----DSAKFKTKVVKNNGFNPVWNETFEFDVTVP-----ELAF 73 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCC----CCCcEeeeeecCCCcCCccCCcEEEEEeCC-----CeEE
Confidence 6899999999999887 5789999999999753210 135799999877656999999999998753 1357
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCC--cceEEEEEEEE
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGK--PNGVLTFSYKV 141 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk--~~G~L~ls~kf 141 (318)
|.|+|+|++.+ +|++||++.++|.+|..+ ..+++|++++|+ ..|.|.+.+++
T Consensus 74 l~~~V~d~~~~-~~~~iG~~~~~l~~l~~g------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 74 LRFVVYDEDSG-DDDFLGQACLPLDSLRQG------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EEEEEEeCCCC-CCcEeEEEEEEhHHhcCc------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 99999999877 999999999999998542 356899988775 46788777765
No 51
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.73 E-value=2.2e-17 Score=139.06 Aligned_cols=112 Identities=17% Similarity=0.233 Sum_probs=90.1
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
.+.|.|+|+.|+||+..+..+..||||+|+|..+... ...++||+++++ +.||+|||+|.|.+....+. ...
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~----~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~L~---~~~ 84 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSS----TSCLFRTKALED-QDKPVFNEVFRVPISSTKLY---QKT 84 (124)
T ss_pred CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCC----CCceEEcCccCC-CCCCccccEEEEECCHHHhh---cCE
Confidence 4789999999999998887788999999999865321 024889999877 69999999999999876543 468
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEE
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEV 124 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~L 124 (318)
|.|.||+.+++.++++||++.|+|.++..... ....||.|
T Consensus 85 L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~--~~~~Wy~l 124 (124)
T cd08680 85 LQVDVCSVGPDQQEECLGGAQISLADFESSEE--MSTKWYNL 124 (124)
T ss_pred EEEEEEeCCCCCceeEEEEEEEEhhhccCCCc--cccccccC
Confidence 99999999988899999999999999844322 23456543
No 52
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.73 E-value=3e-17 Score=136.69 Aligned_cols=108 Identities=17% Similarity=0.219 Sum_probs=86.4
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
.+.|.|+|+.|++|...+ .+.+||||+|+|..+.. +..++||+++++ +.||+|||+|.|.+....+ ...
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~-----~~~~~kT~v~~~-t~~P~~nE~F~f~v~~~~~----~~~ 79 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKE-----VRFRQKTSTVPD-SANPLFHETFSFDVNERDY----QKR 79 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCC-----CcceEeCccccC-CCCCccccEEEEEcChHHh----CCE
Confidence 578999999999999888 78999999999986421 135779999876 5899999999999976433 235
Q ss_pred EEEEEeecCcCC-CCcEEEEEEEeCcccccccCceeEEEEEEE
Q 036009 83 VHFELKHEGVMF-GDKTIGEVRVPIKDLISEFNGVVRFVDYEV 124 (318)
Q Consensus 83 L~feV~d~d~~~-~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~L 124 (318)
|.|+||+.+... ++++||++.|+|.++..+. ....||.|
T Consensus 80 l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~---~~~~Wy~l 119 (119)
T cd08685 80 LLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQK---EISGWYYL 119 (119)
T ss_pred EEEEEECCCCCcCCCEEEEEEEecHHHhccCc---cccceEeC
Confidence 889999988765 4789999999999997432 23567764
No 53
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.73 E-value=2.7e-17 Score=133.07 Aligned_cols=102 Identities=18% Similarity=0.330 Sum_probs=86.2
Q ss_pred eEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEE
Q 036009 5 SLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVH 84 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~ 84 (318)
.|.|+|++|++|+..+..+.+||||+|++.+ +++||+++++ +.||+|||+|.|.+.+.. ...|.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~----------~~~kT~v~~~-t~nP~Wne~f~f~v~~~~-----~~~l~ 64 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK----------TTQKSKVKER-TNNPVWEEGFTFLVRNPE-----NQELE 64 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECC----------EEEeCccccC-CCCCcccceEEEEeCCCC-----CCEEE
Confidence 4889999999999988888999999999964 4789999875 689999999999998631 34699
Q ss_pred EEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeC
Q 036009 85 FELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRN 126 (318)
Q Consensus 85 feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~ 126 (318)
|+|+|++. |++||.+.|+|.+|.... +.....||.|.+
T Consensus 65 v~v~d~~~---~~~iG~~~i~l~~l~~~~-~~~~~~w~~L~~ 102 (105)
T cd04050 65 IEVKDDKT---GKSLGSLTLPLSELLKEP-DLTLDQPFPLDN 102 (105)
T ss_pred EEEEECCC---CCccEEEEEEHHHhhccc-cceeeeeEecCC
Confidence 99999874 889999999999998764 334578899865
No 54
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.73 E-value=4.5e-17 Score=141.11 Aligned_cols=110 Identities=16% Similarity=0.148 Sum_probs=88.6
Q ss_pred CceEEEEEEEeecCCCCC-CCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcce
Q 036009 3 SSSLEIKVMFGKDLKAFN-FFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHI 81 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d-~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~ 81 (318)
.+.|.|+|++|++|...+ ..+.+||||+|++..+.. +..++||+++++ ++||+|||+|.|.+.. . ..
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~-----~~~k~KT~v~kk-tlnPvfNE~F~f~v~l---~---~~ 95 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKK-----CIAKKKTKIARK-TLDPLYQQQLVFDVSP---T---GK 95 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCc-----cccceeceecCC-CCCCccCCeEEEEEcC---C---CC
Confidence 478999999999998764 567899999999985421 135889999976 6999999999999972 1 35
Q ss_pred EEEEEEe-ecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCC
Q 036009 82 FVHFELK-HEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNP 127 (318)
Q Consensus 82 ~L~feV~-d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~ 127 (318)
.|.|+|| |.+.+.++++||++.|+|+++.... ....||.|..+
T Consensus 96 ~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~---~~~~Wy~L~~~ 139 (146)
T cd04028 96 TLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSN---LVIGWYKLFPT 139 (146)
T ss_pred EEEEEEEeCCCCCCCCceEEEEEEEcccccCCC---CceeEEecCCc
Confidence 7999999 5777778999999999999975332 24679998865
No 55
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.73 E-value=4.7e-17 Score=133.85 Aligned_cols=110 Identities=18% Similarity=0.297 Sum_probs=88.7
Q ss_pred CceEEEEEEEeecCCCCC-CCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcce
Q 036009 3 SSSLEIKVMFGKDLKAFN-FFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHI 81 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d-~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~ 81 (318)
.+.|.|+|++|++|...+ ..+..||||+|.+.+... +..+.||+++++ +.||+|||+|.|.+....+. ..
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~-----~~~~~kT~v~~~-t~~P~wne~f~f~i~~~~l~---~~ 83 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKS-----KQSKRKTSVKKN-TTNPVFNETLKYHISKSQLE---TR 83 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCC-----cCceeeccccCC-CCCCcccceEEEeCCHHHhC---CC
Confidence 578999999999999888 678999999999964311 125789999765 69999999999998764332 35
Q ss_pred EEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEE
Q 036009 82 FVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEV 124 (318)
Q Consensus 82 ~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~L 124 (318)
.|.|+|||.+.++++++||++.++|.++..+. ....||.|
T Consensus 84 ~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~---~~~~w~~l 123 (123)
T cd08521 84 TLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDS---QQSEWYPL 123 (123)
T ss_pred EEEEEEEeCCCCcCCceeeEEEEecccccccC---CCccEEEC
Confidence 79999999998889999999999999986432 24567765
No 56
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.73 E-value=3.4e-17 Score=133.48 Aligned_cols=107 Identities=14% Similarity=0.157 Sum_probs=87.0
Q ss_pred eEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEE
Q 036009 5 SLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVH 84 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~ 84 (318)
.|+|+|++|++|. .+..||||+|++.+ +++||+++++ +.||+|||+|.|.+..... +.....|.
T Consensus 5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~~----------~~~kT~~~~~-t~nP~wne~f~f~~~~~~~-~l~~~~l~ 68 (111)
T cd04011 5 QVRVRVIEARQLV----GGNIDPVVKVEVGG----------QKKYTSVKKG-TNCPFYNEYFFFNFHESPD-ELFDKIIK 68 (111)
T ss_pred EEEEEEEEcccCC----CCCCCCEEEEEECC----------EeeeeeEEec-cCCCccccEEEEecCCCHH-HHhcCeEE
Confidence 5899999999998 46799999999974 4778999865 5899999999999754311 01134799
Q ss_pred EEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCC
Q 036009 85 FELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNP 127 (318)
Q Consensus 85 feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~ 127 (318)
|+|||.+.+++|++||++.++|+++..+........|+.|.++
T Consensus 69 i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~~ 111 (111)
T cd04011 69 ISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTDP 111 (111)
T ss_pred EEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEeeCc
Confidence 9999999888899999999999999877555556789998763
No 57
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.72 E-value=5.5e-17 Score=135.07 Aligned_cols=105 Identities=22% Similarity=0.274 Sum_probs=89.5
Q ss_pred ceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEE
Q 036009 4 SSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFV 83 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L 83 (318)
+.|+|+|++|++|+..+.++.+||||+|++.+ ..+.+|+++++ +.||+|||+|.|.+... ...|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~---------~~~~kT~~~~~-t~~P~Wne~f~~~v~~~------~~~L 64 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNG---------IVKGRTVTISN-TLNPVWDEVLYVPVTSP------NQKI 64 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECC---------EEeeceeEECC-CcCCccCceEEEEecCC------CCEE
Confidence 57999999999999999889999999999953 24688988765 68999999999988653 2479
Q ss_pred EEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCC
Q 036009 84 HFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPD 128 (318)
Q Consensus 84 ~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~s 128 (318)
.|+|||++.+.+|++||++.++|.+++... ...||.|.+.+
T Consensus 65 ~v~v~d~~~~~~d~~IG~~~~~l~~l~~~~----~~~~~~~~~~~ 105 (120)
T cd04045 65 TLEVMDYEKVGKDRSLGSVEINVSDLIKKN----EDGKYVEYDDE 105 (120)
T ss_pred EEEEEECCCCCCCCeeeEEEEeHHHhhCCC----CCceEEecCCC
Confidence 999999998888999999999999998763 36788888754
No 58
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.72 E-value=5.4e-17 Score=133.82 Aligned_cols=110 Identities=23% Similarity=0.237 Sum_probs=86.7
Q ss_pred CCceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccC-cccCCCcc
Q 036009 2 ESSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKG-ILFHDCGH 80 (318)
Q Consensus 2 ~~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~-~~l~d~~~ 80 (318)
..+.|.|+|++|++|...+.++..||||+|.+.+... ...++||+++++ +.||+|||+|.|.+.. ..+ ..
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~-----~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l---~~ 84 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRS-----EKSKRRTKTVKK-TLNPEWNQTFEYSNVRRETL---KE 84 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCC-----ccccccccccCC-CCCCccccEEEEcccCHHHh---CC
Confidence 3578999999999999998888999999999975311 135789999876 5899999999998643 222 23
Q ss_pred eEEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEE
Q 036009 81 IFVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEV 124 (318)
Q Consensus 81 ~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~L 124 (318)
..|.|+|||++.+.+|++||++.++|++..... ...||.|
T Consensus 85 ~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~~----~~~W~~L 124 (125)
T cd04031 85 RTLEVTVWDYDRDGENDFLGEVVIDLADALLDD----EPHWYPL 124 (125)
T ss_pred CEEEEEEEeCCCCCCCcEeeEEEEecccccccC----CcceEEC
Confidence 579999999998888999999999999833221 2467765
No 59
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.72 E-value=2e-16 Score=138.40 Aligned_cols=137 Identities=18% Similarity=0.249 Sum_probs=103.1
Q ss_pred eEEEEEEEeecC--CCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcc--cC-CCc
Q 036009 5 SLEIKVMFGKDL--KAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGIL--FH-DCG 79 (318)
Q Consensus 5 ~L~VtVisA~dL--~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~--l~-d~~ 79 (318)
.++|+|+.|+++ ...+..+..||||++++.-..- +.++.||+|+++ ++||+|||+|.|.+.... +. ...
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~-----~~~k~KT~v~k~-TlnPvfNE~f~f~I~~~~~~~~R~l~ 76 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNE-----EPQSGKTSTIKD-TNSPEYNESFKLNINRKHRSFQRVFK 76 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCC-----CCceeecCcccC-CCCCcccceEEEEeccccchhhhhcc
Confidence 467888888884 5555557899999999832110 247999999977 599999999999996531 00 011
Q ss_pred ceEEEEEEeecCcCC-CCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCCcceEEEEEEEEeecCCCCCC
Q 036009 80 HIFVHFELKHEGVMF-GDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKPNGVLTFSYKVNGMNSAIGT 150 (318)
Q Consensus 80 ~~~L~feV~d~d~~~-~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~~G~L~ls~kf~~~~~~~~~ 150 (318)
...|.|+|||.+.++ +|++||+|.|+|..+..+.. ...+++|.+......|.|.+.+++..+-...+.
T Consensus 77 ~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~---~~~~~~L~~~~k~~Gg~l~v~ir~r~p~~~~~~ 145 (155)
T cd08690 77 RHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCE---IHESVDLMDGRKATGGKLEVKVRLREPLTGKQL 145 (155)
T ss_pred CCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCc---ceEEEEhhhCCCCcCCEEEEEEEecCCCcccee
Confidence 346999999998764 69999999999999876542 345899887444568899999999988776643
No 60
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.71 E-value=1.2e-16 Score=133.63 Aligned_cols=113 Identities=21% Similarity=0.276 Sum_probs=91.5
Q ss_pred eEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEE
Q 036009 5 SLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVH 84 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~ 84 (318)
.|+|+|++|++|...+.++..||||+|.+.+ .+++|+++++ +.||+|||+|.|.+... ...|.
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~----------~~~kT~~v~~-t~~P~Wne~f~f~~~~~------~~~l~ 64 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK----------TKKRTKTIPQ-NLNPVWNEKFHFECHNS------SDRIK 64 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECC----------EeeecceecC-CCCCccceEEEEEecCC------CCEEE
Confidence 5899999999999999889999999999852 4689999876 69999999999988642 23699
Q ss_pred EEEeecCcC-----------CCCcEEEEEEEeCcccccccCceeEEEEEEEeCCC--CCcceEEEEEE
Q 036009 85 FELKHEGVM-----------FGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPD--GKPNGVLTFSY 139 (318)
Q Consensus 85 feV~d~d~~-----------~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~s--Gk~~G~L~ls~ 139 (318)
|+|||++.. ..|++||.+.+++.++... ...||.|...+ ++.+|.|.|++
T Consensus 65 i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~~-----~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 65 VRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSGE-----MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred EEEEECCCCcccccceeccccCCCcceEEEEEhHHccCC-----CCeEEECccCCCCCcEeEEEEEEC
Confidence 999998742 3688999999999987532 24788887654 45799998864
No 61
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.71 E-value=1.2e-16 Score=132.26 Aligned_cols=108 Identities=19% Similarity=0.289 Sum_probs=87.1
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCc-ccCCCcce
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGI-LFHDCGHI 81 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~-~l~d~~~~ 81 (318)
.+.|.|+|++|++|+..+.+++.||||+|.+..+. ..+.||+++++ +.||+|||+|.|.+... .+ ...
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~-------~~~~kT~v~~~-t~~P~Wne~f~f~~~~~~~l---~~~ 83 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDK-------KHKLETKVKRK-NLNPHWNETFLFEGFPYEKL---QQR 83 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCC-------CcceeeeeecC-CCCCccceeEEEcccCHHHh---CCC
Confidence 56899999999999999888899999999996421 35789999876 58999999999985322 12 134
Q ss_pred EEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEE
Q 036009 82 FVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEV 124 (318)
Q Consensus 82 ~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~L 124 (318)
.|.|+|||++.+.+|++||++.|+|+++.... ....|+.|
T Consensus 84 ~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~---~~~~W~~l 123 (125)
T cd08386 84 VLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTE---EQTFWKDL 123 (125)
T ss_pred EEEEEEEeCCCCcCCcEeeEEEEecccccCCC---CcceEEec
Confidence 79999999998888999999999999987543 24567765
No 62
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.71 E-value=1.7e-16 Score=130.68 Aligned_cols=109 Identities=15% Similarity=0.229 Sum_probs=88.7
Q ss_pred CceEEEEEEEeecCCCCC-CCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcce
Q 036009 3 SSSLEIKVMFGKDLKAFN-FFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHI 81 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d-~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~ 81 (318)
.+.|.|+|++|++|...+ .++..||||+|++.... ..+.||+++++ +.||+|||+|.|.+....++ ..
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~-------~~~~~T~v~~~-~~~P~wne~f~f~i~~~~l~---~~ 81 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE-------RRSLQSKVKRK-TQNPNFDETFVFQVSFKELQ---RR 81 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC-------CCceEeeeEcC-CCCCccceEEEEEcCHHHhc---cc
Confidence 578999999999999988 67899999999986431 24678998876 69999999999998764332 35
Q ss_pred EEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEe
Q 036009 82 FVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVR 125 (318)
Q Consensus 82 ~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr 125 (318)
.|.|+|||.+.+.++++||++.++|.++..... ...|+.|.
T Consensus 82 ~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~---~~~w~~L~ 122 (123)
T cd08390 82 TLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKG---GVVWRDLE 122 (123)
T ss_pred EEEEEEEECCcCCCCcEEEEEEEeccceecCCC---ceEEEeCC
Confidence 799999999988889999999999999887542 34677653
No 63
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.70 E-value=1.2e-16 Score=136.52 Aligned_cols=97 Identities=19% Similarity=0.256 Sum_probs=81.8
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
...|.|+|++|++|...+..+.+||||+|+|..+.. +..++||+|+++ +.||+|||+|.|.+....+. ...
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~-----~~~k~kT~v~k~-t~nP~~nE~f~F~v~~~~l~---~~~ 84 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGR-----KISKKKTSVKRD-DTNPIFNEAMIFSVPAIVLQ---DLS 84 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCc-----cccccCCccccC-CCCCeeceeEEEECCHHHhC---CcE
Confidence 468999999999999988888999999999975321 134778999876 59999999999999875443 468
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCcc
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKD 108 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsd 108 (318)
|+|+|||++.++++++||++.|....
T Consensus 85 l~~~V~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 85 LRVTVAESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred EEEEEEeCCCCCCCCeeEEEEECCCC
Confidence 99999999999999999999997653
No 64
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.69 E-value=1.6e-16 Score=136.36 Aligned_cols=97 Identities=20% Similarity=0.301 Sum_probs=81.4
Q ss_pred CceEEEEEEEeecCCCCCC--CCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcc
Q 036009 3 SSSLEIKVMFGKDLKAFNF--FQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGH 80 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~--~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~ 80 (318)
.+.|.|+|+.|++|...+. .+.+||||+|+|..... +..++||+++++ +.||+|||+|.|.+....+. .
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~-----k~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L~---~ 84 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNA-----KLKKKQTKRAKH-KINPVWNEMIMFELPSELLA---A 84 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCc-----ccceeccceeeC-CCCCccccEEEEECCHHHhC---c
Confidence 5789999999999998873 34589999999986421 245789999876 69999999999999876543 4
Q ss_pred eEEEEEEeecCcCCCCcEEEEEEEeCcc
Q 036009 81 IFVHFELKHEGVMFGDKTIGEVRVPIKD 108 (318)
Q Consensus 81 ~~L~feV~d~d~~~~Dd~IG~a~VpLsd 108 (318)
..|.|+|+|.+.+++|++||++.+.+..
T Consensus 85 ~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 85 SSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred cEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 6799999999999999999999999864
No 65
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.68 E-value=2.8e-16 Score=137.77 Aligned_cols=111 Identities=20% Similarity=0.227 Sum_probs=88.2
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccC-cccCCCcce
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKG-ILFHDCGHI 81 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~-~~l~d~~~~ 81 (318)
.+.|.|+|++|++|...+.++..||||+|.+..+.. +..++||+++++ +.||+|||+|.|.+.. ..+. ..
T Consensus 26 ~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~-----~~~~~kT~vi~~-t~nP~WnE~f~f~~~~~~~l~---~~ 96 (162)
T cd04020 26 TGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKS-----KKSKQKTPVVKK-SVNPVWNHTFVYDGVSPEDLS---QA 96 (162)
T ss_pred CceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCC-----CCcceeCCccCC-CCCCCCCCEEEEecCCHHHhC---CC
Confidence 478999999999999999889999999999964321 135889999977 5899999999998532 2221 35
Q ss_pred EEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEe
Q 036009 82 FVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVR 125 (318)
Q Consensus 82 ~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr 125 (318)
.|.|+|||++.+.+|++||++.+.++++..... ...|+.+.
T Consensus 97 ~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~---~~~w~~~~ 137 (162)
T cd04020 97 CLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQ---AVDWMDST 137 (162)
T ss_pred EEEEEEEeCCCCCCCceEEEEEEeCCccccCCC---ccccccCC
Confidence 799999999988889999999999999875432 34556554
No 66
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.68 E-value=8.1e-17 Score=135.93 Aligned_cols=117 Identities=21% Similarity=0.225 Sum_probs=90.6
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
++.|.|+|++|++|...+.++.+||||+|.+..... +..+.||+++++ +.||+|||+|.|.+....+. ...
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~-----~~~~~kT~v~k~-t~nP~w~e~F~f~v~~~~~~---~~~ 84 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKK-----RISKKKTHVKKC-TLNPVFNESFVFDIPSEELE---DIS 84 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCc-----eeeeEcCccccC-CCCCccCceEEEECCHHHhC---CCE
Confidence 468999999999999999889999999999975311 124678998866 69999999999999764332 357
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCCcce
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKPNG 133 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~~G 133 (318)
|.|+|||++.+.++++||++.+++.. ... ....|+.|.+..|++.+
T Consensus 85 l~~~v~d~d~~~~~~~iG~~~~~~~~-~~~----~~~~w~~l~~~~~~~i~ 130 (136)
T cd08404 85 VEFLVLDSDRVTKNEVIGRLVLGPKA-SGS----GGHHWKEVCNPPRRQIA 130 (136)
T ss_pred EEEEEEECCCCCCCccEEEEEECCcC-CCc----hHHHHHHHHhCCCCeee
Confidence 89999999998899999999999987 221 13456666655555433
No 67
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.68 E-value=2.6e-16 Score=133.55 Aligned_cols=100 Identities=20% Similarity=0.256 Sum_probs=81.5
Q ss_pred ceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEE
Q 036009 4 SSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFV 83 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L 83 (318)
+.|.|+|++|++|...+ ..||||+|++.+ ++.+|+++++ .||+|||+|.|.+.+. ...|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~----------~k~kT~v~~~--~nP~WnE~F~F~~~~~------~~~L 60 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQN----------VKSTTIAVRG--SQPCWEQDFMFEINRL------DLGL 60 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECC----------EEeEeeECCC--CCCceeeEEEEEEcCC------CCEE
Confidence 58999999999998765 358999999953 5889999865 5999999999999753 2349
Q ss_pred EEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeC
Q 036009 84 HFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRN 126 (318)
Q Consensus 84 ~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~ 126 (318)
.|+|||++ +.+|++||++.|+|.++..... .....||+|..
T Consensus 61 ~v~V~dkd-~~~DD~lG~v~i~L~~v~~~~~-~~~~~Wy~L~~ 101 (127)
T cd08394 61 VIELWNKG-LIWDTLVGTVWIPLSTIRQSNE-EGPGEWLTLDS 101 (127)
T ss_pred EEEEEeCC-CcCCCceEEEEEEhHHcccCCC-CCCCccEecCh
Confidence 99999988 4599999999999999987643 22357888764
No 68
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.68 E-value=3.2e-16 Score=132.08 Aligned_cols=106 Identities=14% Similarity=0.219 Sum_probs=85.2
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
.+.|.|+|++|++|...+.++..||||+|.+.+.... .+..++||+++++ +.||+|||+|.|.+...... .....
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~---~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~~~-~~~~~ 89 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLF---PDVPTPKTQVKKK-TLFPLFDESFEFNVPPEQCS-VEGAL 89 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcC---ccccccccccCcC-CCCCccCCEEEEEechhhcc-cCCCE
Confidence 4689999999999999988899999999999753100 0135789999876 59999999999998753211 12357
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCccccccc
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKDLISEF 113 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~ 113 (318)
|.|+|||++.+.+|++||++.++|++|..-.
T Consensus 90 l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~ 120 (133)
T cd04009 90 LLFTVKDYDLLGSNDFEGEAFLPLNDIPGVE 120 (133)
T ss_pred EEEEEEecCCCCCCcEeEEEEEeHHHCCccc
Confidence 9999999998888999999999999988654
No 69
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=3e-16 Score=136.56 Aligned_cols=107 Identities=19% Similarity=0.182 Sum_probs=85.6
Q ss_pred eEEEEEEEeecCCCCCCCC--------------ccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEc
Q 036009 5 SLEIKVMFGKDLKAFNFFQ--------------KLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDL 70 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d~~g--------------k~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v 70 (318)
+|.|+|++|+||+..+.++ .+||||+|.+.+ ++.||+++++ +.||+|||+|.|.+
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g----------~~~kT~v~~~-t~nPvWNE~f~f~v 69 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG----------QKVKTSVKKN-SYNPEWNEQIVFPE 69 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC----------EeeecceEcC-CCCCCcceEEEEEe
Confidence 4899999999999987543 689999999964 4679999976 58999999999997
Q ss_pred cCcccCCCcceEEEEEEeecCcCCCCcEEEEEEEeCcccccccCc----eeEEEEEEEeC
Q 036009 71 KGILFHDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNG----VVRFVDYEVRN 126 (318)
Q Consensus 71 ~~~~l~d~~~~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g----~~~~~sy~Lr~ 126 (318)
....+ ...|.|+|||++.+++|++||.+.|+|.+|...... .....|+.|.+
T Consensus 70 ~~p~~----~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 70 MFPPL----CERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred eCCCc----CCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 54322 246999999999888999999999999998875421 01247788775
No 70
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.68 E-value=9.3e-16 Score=124.87 Aligned_cols=115 Identities=21% Similarity=0.194 Sum_probs=86.0
Q ss_pred eEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEE
Q 036009 5 SLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVH 84 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~ 84 (318)
.|+|+|++|++|+.. +.+||||+|++.+ ..+.||+++++ .||+|||+|.|.+....+ ....|.
T Consensus 1 ~L~v~vi~a~~l~~~---~~~dpyv~v~~~~---------~~~~kT~~~~~--~~P~Wne~f~f~v~~~~~---~~~~l~ 63 (117)
T cd08383 1 SLRLRILEAKNLPSK---GTRDPYCTVSLDQ---------VEVARTKTVEK--LNPFWGEEFVFDDPPPDV---TFFTLS 63 (117)
T ss_pred CeEEEEEEecCCCcC---CCCCceEEEEECC---------EEeEecceEEC--CCCcccceEEEecCCccc---cEEEEE
Confidence 388999999999876 7899999999964 23578999865 899999999999976432 235788
Q ss_pred EEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCC--CCcceEEEEEEEE
Q 036009 85 FELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPD--GKPNGVLTFSYKV 141 (318)
Q Consensus 85 feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~s--Gk~~G~L~ls~kf 141 (318)
|.++|.+.+.++.++|.+.|. .+..+. ....||+|...+ ++..|+|+|+++|
T Consensus 64 i~v~d~~~~~~~~~~g~v~l~--~~~~~~---~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 64 FYNKDKRSKDRDIVIGKVALS--KLDLGQ---GKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEecccCCCeeEEEEEEec--CcCCCC---cceeEEECccCCCCCCcCceEEEEEEC
Confidence 889988766556677765554 433322 245788886543 4568999999876
No 71
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.67 E-value=3.6e-16 Score=131.00 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=89.7
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
.+.|.|+|++|++|...+.++..||||+|.+.+... +..+.||+++++ +.||+|||+|.|.+....+. ...
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~-----~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~l~---~~~ 82 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAG-----KKSKHKTQVKKK-TLNPEFNEEFFYDIKHSDLA---KKT 82 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCC-----ccCCceeeeEec-cCCCCcccEEEEECCHHHhC---CCE
Confidence 578999999999999999889999999999975321 135789999876 69999999999998764332 357
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCC
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGK 130 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk 130 (318)
|.|+|||.+.+.+|++||++.|++.+. +..+..|+.+++..++
T Consensus 83 l~~~V~d~d~~~~~~~lG~~~i~l~~~-----~~~~~~W~~~l~~~~~ 125 (133)
T cd08384 83 LEITVWDKDIGKSNDYIGGLQLGINAK-----GERLRHWLDCLKNPDK 125 (133)
T ss_pred EEEEEEeCCCCCCccEEEEEEEecCCC-----CchHHHHHHHHhCCCC
Confidence 999999999888899999999999752 1223467776554443
No 72
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.67 E-value=1.2e-15 Score=131.88 Aligned_cols=91 Identities=22% Similarity=0.415 Sum_probs=80.8
Q ss_pred ceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEE
Q 036009 4 SSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFV 83 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L 83 (318)
+.|.|+|++|++|...+. +++||||+|++.+ ++.||+++++ +.||+|||+|.|.+.+. ...|
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~----------~~~kT~vvk~-t~nP~WnE~f~f~i~~~------~~~l 63 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGN----------QKVKTRVIKK-NLNPVWNEELTLSVPNP------MAPL 63 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECC----------EEEEeeeEcC-CCCCeecccEEEEecCC------CCEE
Confidence 679999999999998886 8899999999953 5899999876 59999999999999763 3469
Q ss_pred EEEEeecCcCCCCcEEEEEEEeCcccccc
Q 036009 84 HFELKHEGVMFGDKTIGEVRVPIKDLISE 112 (318)
Q Consensus 84 ~feV~d~d~~~~Dd~IG~a~VpLsdLl~~ 112 (318)
.|+|||++.+.+|++||.+.+.|.+|+..
T Consensus 64 ~~~V~D~d~~~~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 64 KLEVFDKDTFSKDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred EEEEEECCCCCCCCEEEEEEEEHHHhhhh
Confidence 99999999998999999999999998764
No 73
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.66 E-value=5.9e-16 Score=130.51 Aligned_cols=98 Identities=16% Similarity=0.247 Sum_probs=81.0
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
.+.|+|+|++|++|...+.++..||||+|.+..... +..++||+++++ +.||+|||+|.|.+....+. ...
T Consensus 14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~-----~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~---~~~ 84 (136)
T cd08402 14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGK-----RLKKKKTTIKKR-TLNPYYNESFSFEVPFEQIQ---KVH 84 (136)
T ss_pred CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCc-----ccceeeccceeC-CCCCcccceEEEECCHHHhC---CCE
Confidence 478999999999999998889999999999964211 124678998765 69999999999998754332 347
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCccc
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKDL 109 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsdL 109 (318)
|.|+|||++.+++|++||++.|++...
T Consensus 85 l~~~v~d~~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 85 LIVTVLDYDRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred EEEEEEeCCCCCCCceeEEEEECCccC
Confidence 999999999888899999999999753
No 74
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.66 E-value=1.9e-16 Score=131.68 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=91.4
Q ss_pred CCceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcce
Q 036009 2 ESSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHI 81 (318)
Q Consensus 2 ~~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~ 81 (318)
+.+.|.|+|++|++|...+..+..||||+|++.+... +..+++|+++++ +.||+|||+|.|.+....+. ..
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~-----~~~~~~T~~~~~-~~~P~wne~f~f~i~~~~l~---~~ 82 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGK-----KLKKKKTSVKKG-TLNPVFNEAFSFDVPAEQLE---EV 82 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCe-----EeeeecCcceec-CCCCeeeeeEEEECCHHHhC---Cc
Confidence 4688999999999999988888999999999975321 124679999875 58999999999999765332 35
Q ss_pred EEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCC
Q 036009 82 FVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGK 130 (318)
Q Consensus 82 ~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk 130 (318)
.|.|+|||.+.+.++++||.+.++|.+ .+. ....|+.|.+..++
T Consensus 83 ~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~---~~~~W~~l~~~~~~ 126 (134)
T cd00276 83 SLVITVVDKDSVGRNEVIGQVVLGPDS--GGE---ELEHWNEMLASPRK 126 (134)
T ss_pred EEEEEEEecCCCCCCceeEEEEECCCC--CCc---HHHHHHHHHhCCCC
Confidence 799999999988889999999999998 221 23567777775544
No 75
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.66 E-value=6.2e-16 Score=130.05 Aligned_cols=97 Identities=21% Similarity=0.300 Sum_probs=80.5
Q ss_pred CCceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcce
Q 036009 2 ESSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHI 81 (318)
Q Consensus 2 ~~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~ 81 (318)
..+.|+|+|++|++|...+.++..||||+|.+..... +..+.||+++++ +.||+|||+|.|.+....+. ..
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~-----~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~~~---~~ 82 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGR-----RLKKKKTSVKKN-TLNPTYNEALVFDVPPENVD---NV 82 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCc-----ccceecCCcccC-CCCCcccceEEEECCHHHhC---CC
Confidence 4678999999999999999899999999999964211 134778998755 69999999999998764332 34
Q ss_pred EEEEEEeecCcCCCCcEEEEEEEeCc
Q 036009 82 FVHFELKHEGVMFGDKTIGEVRVPIK 107 (318)
Q Consensus 82 ~L~feV~d~d~~~~Dd~IG~a~VpLs 107 (318)
.|.|+|||++.+++|++||++.|++.
T Consensus 83 ~l~~~v~d~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 83 SLIIAVVDYDRVGHNELIGVCRVGPN 108 (134)
T ss_pred EEEEEEEECCCCCCCceeEEEEECCC
Confidence 69999999998888999999999976
No 76
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.66 E-value=5.8e-16 Score=130.52 Aligned_cols=98 Identities=17% Similarity=0.266 Sum_probs=81.2
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
.++|.|+|++|++|...+.+++.||||+|.+...+. +..+.||+++++ +.||+|||+|.|.+....+. ...
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~-----~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~~---~~~ 84 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDK-----RVEKKKTVIKKR-TLNPVFNESFIFNIPLERLR---ETT 84 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCC-----ccccccCcceeC-CCCCcccceEEEeCCHHHhC---CCE
Confidence 478999999999999988889999999999863211 134679999876 58999999999998653322 357
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCccc
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKDL 109 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsdL 109 (318)
|.|+|||.+.+++|++||++.|++.+.
T Consensus 85 l~~~v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 85 LIITVMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred EEEEEEECCCCCCCcEeEEEEECCccC
Confidence 999999999888899999999999875
No 77
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.66 E-value=6.8e-16 Score=131.91 Aligned_cols=99 Identities=16% Similarity=0.323 Sum_probs=82.5
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
.++|.|+|++|++|...+..+..||||+|.+..+... +..++||+++++ +.||+|||+|.|.+....+. ...
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~----~~~~~kT~v~~~-t~nPvfnEtF~f~i~~~~l~---~~~ 85 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQ----EISKSKTSIRRG-QPDPEFKETFVFQVALFQLS---EVT 85 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCc----ceeeccceeecC-CCCCcEeeeEEEECCHHHhC---ccE
Confidence 4789999999999999988889999999999753211 123679999876 58999999999999875443 468
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCccc
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKDL 109 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsdL 109 (318)
|.|+|||.+.+.++++||++.+.+...
T Consensus 86 L~~~V~~~~~~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 86 LMFSVYNKRKMKRKEMIGWFSLGLNSS 112 (138)
T ss_pred EEEEEEECCCCCCCcEEEEEEECCcCC
Confidence 999999999889999999999988743
No 78
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.66 E-value=5.9e-16 Score=131.10 Aligned_cols=91 Identities=22% Similarity=0.305 Sum_probs=76.9
Q ss_pred ceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEE
Q 036009 4 SSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFV 83 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L 83 (318)
++|+|+|++|++|.. +.+++.||||+|++.+ .++||+++++ +.||+|||+|.|.+.... ....|
T Consensus 28 ~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~----------~~~kT~vi~~-t~nPvWNE~F~f~~~~~~----~~~~L 91 (127)
T cd04032 28 ATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG----------QEKRTEVIWN-NNNPRWNATFDFGSVELS----PGGKL 91 (127)
T ss_pred EEEEEEEEECCCCCc-CcCCCCCeEEEEEECC----------ccccCceecC-CCCCcCCCEEEEecccCC----CCCEE
Confidence 689999999999985 6678999999999963 3889999976 589999999999753321 13579
Q ss_pred EEEEeecCcCCCCcEEEEEEEeCcccc
Q 036009 84 HFELKHEGVMFGDKTIGEVRVPIKDLI 110 (318)
Q Consensus 84 ~feV~d~d~~~~Dd~IG~a~VpLsdLl 110 (318)
+|+|||++.+++|++||.+.++|....
T Consensus 92 ~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 92 RFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred EEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 999999998889999999999998654
No 79
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.65 E-value=1e-15 Score=129.60 Aligned_cols=97 Identities=14% Similarity=0.214 Sum_probs=79.1
Q ss_pred CCceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcce
Q 036009 2 ESSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHI 81 (318)
Q Consensus 2 ~~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~ 81 (318)
..+.|+|+|++|++|...+.++..||||+|.+..... +..++||+++++ +.||+|||+|.|.+....+. ..
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~-----~~~~~kT~v~~~-t~nP~wnE~F~f~i~~~~l~---~~ 82 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLK-----LIKTKKTSCMRG-TIDPFYNESFSFKVPQEELE---NV 82 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCc-----ccceEcCccccC-CCCCccceeEEEeCCHHHhC---CC
Confidence 3578999999999999999889999999999854211 124688999866 69999999999999764432 34
Q ss_pred EEEEEEeecCcCCCCcEEEEEEEeCc
Q 036009 82 FVHFELKHEGVMFGDKTIGEVRVPIK 107 (318)
Q Consensus 82 ~L~feV~d~d~~~~Dd~IG~a~VpLs 107 (318)
.|.|+|||++.+.+|++||++.|...
T Consensus 83 ~l~~~V~d~d~~~~~~~iG~~~l~~~ 108 (135)
T cd08410 83 SLVFTVYGHNVKSSNDFIGRIVIGQY 108 (135)
T ss_pred EEEEEEEeCCCCCCCcEEEEEEEcCc
Confidence 69999999998889999999886653
No 80
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.65 E-value=1.2e-15 Score=129.75 Aligned_cols=98 Identities=15% Similarity=0.262 Sum_probs=81.1
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
.+.|.|+|++|+||...+ ++..||||+|.+.+... +..++||+++++ +.||+|||+|.|.+....+. ...
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~-----~~~~~kT~v~~~-~~nP~fnE~F~f~i~~~~l~---~~~ 83 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNK-----VVKTKKTEVVDG-AASPSFNESFSFKVTSRQLD---TAS 83 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCE-----EeeeeecccEeC-CCCCcccceEEEECCHHHhC---ccE
Confidence 468999999999999888 88899999999985321 124779999865 69999999999999865443 367
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCcccc
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKDLI 110 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsdLl 110 (318)
|.|+|++.+.+.+|++||++.|....+.
T Consensus 84 L~~~V~~~~~~~~~~~lG~v~ig~~~~~ 111 (137)
T cd08409 84 LSLSVMQSGGVRKSKLLGRVVLGPFMYA 111 (137)
T ss_pred EEEEEEeCCCCCCcceEEEEEECCcccC
Confidence 9999999998889999999999865443
No 81
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.64 E-value=2.7e-15 Score=124.10 Aligned_cols=102 Identities=24% Similarity=0.350 Sum_probs=82.7
Q ss_pred CCceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEE-ccCcccCCCcc
Q 036009 2 ESSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFD-LKGILFHDCGH 80 (318)
Q Consensus 2 ~~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~-v~~~~l~d~~~ 80 (318)
..+.|+|+|++|++|...+.++..||||+|.+.+... +..+.||+++++ +.||+|||+|.|. +....+ ..
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~-----~~~~~rT~v~~~-~~~P~Wne~f~f~~~~~~~~---~~ 83 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGAS-----KATKLRTKTVHK-TRNPEFNETLTYYGITEEDI---QR 83 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCC-----CCCceeeeeecC-CCCCCccceEEEcCCCHHHh---CC
Confidence 3578999999999999988888999999999964321 135789999976 5899999999996 332211 13
Q ss_pred eEEEEEEeecCcCCCCcEEEEEEEeCccccccc
Q 036009 81 IFVHFELKHEGVMFGDKTIGEVRVPIKDLISEF 113 (318)
Q Consensus 81 ~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~ 113 (318)
..|.|+|||++.+ ++++||++.++|++|....
T Consensus 84 ~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~ 115 (123)
T cd04035 84 KTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQ 115 (123)
T ss_pred CEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCc
Confidence 5799999999987 8999999999999998653
No 82
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.64 E-value=2.1e-15 Score=129.32 Aligned_cols=98 Identities=17% Similarity=0.273 Sum_probs=80.4
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
.++|.|+|++|++|+.....+..||||+|+|..... +..++||++++++..||+|||+|.|++... +. ...
T Consensus 13 ~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k-----~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~---~~-~v~ 83 (135)
T cd08692 13 NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGG-----LLYKKKTRLVKSSNGQVKWGETMIFPVTQQ---EH-GIQ 83 (135)
T ss_pred CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCC-----cceeecCccEECCCCCceecceEEEeCCch---hh-eeE
Confidence 578999999999999865455679999999986432 246899999877545799999999999864 22 467
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCccc
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKDL 109 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsdL 109 (318)
|.|+|+|.+++.+|++||++.+.++..
T Consensus 84 l~v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 84 FLIKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred EEEEEEeCCCCcCCceEEEEEECCccC
Confidence 889999999888999999999999763
No 83
>PLN03008 Phospholipase D delta
Probab=99.64 E-value=1.7e-15 Score=159.70 Aligned_cols=125 Identities=20% Similarity=0.384 Sum_probs=102.1
Q ss_pred ceEEEEEEEeecCCCCCC------------------------------------------CCccCeEEEEEEecCCCcch
Q 036009 4 SSLEIKVMFGKDLKAFNF------------------------------------------FQKLTLYVLVSIVSDDPAKT 41 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~------------------------------------------~gk~DPYV~VsL~~~~p~~~ 41 (318)
+.|+|+|..|++|++.|+ ++++||||+|.|.+
T Consensus 14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~------ 87 (868)
T PLN03008 14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQ------ 87 (868)
T ss_pred cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECC------
Confidence 679999999999875221 24679999999953
Q ss_pred hcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEE
Q 036009 42 LEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVD 121 (318)
Q Consensus 42 ~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~s 121 (318)
.++.||+|+++ +.||+|||+|.|.+.+. ...|.|+|+|.+.+ ++++||++.|||.+|..+. ....|
T Consensus 88 ---~rv~RTrVi~n-~~NPvWNE~F~f~vah~------~s~L~f~VkD~D~~-gaD~IG~a~IPL~~L~~Ge---~vd~W 153 (868)
T PLN03008 88 ---ATLARTRVLKN-SQEPLWDEKFNISIAHP------FAYLEFQVKDDDVF-GAQIIGTAKIPVRDIASGE---RISGW 153 (868)
T ss_pred ---cceeeEEeCCC-CCCCCcceeEEEEecCC------CceEEEEEEcCCcc-CCceeEEEEEEHHHcCCCC---ceEEE
Confidence 24679999866 58999999999999863 24799999999876 5789999999999988754 46799
Q ss_pred EEEeCCCCCc---ceEEEEEEEEeecCCCC
Q 036009 122 YEVRNPDGKP---NGVLTFSYKVNGMNSAI 148 (318)
Q Consensus 122 y~Lr~~sGk~---~G~L~ls~kf~~~~~~~ 148 (318)
+.|.+.++|+ .|.|+|+++|.+...+.
T Consensus 154 l~Ll~~~~kp~k~~~kl~v~lqf~pv~~~~ 183 (868)
T PLN03008 154 FPVLGASGKPPKAETAIFIDMKFTPFDQIH 183 (868)
T ss_pred EEccccCCCCCCCCcEEEEEEEEEEccccc
Confidence 9999987764 47999999999876654
No 84
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.63 E-value=2.6e-15 Score=125.47 Aligned_cols=111 Identities=23% Similarity=0.242 Sum_probs=91.3
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
.+.|.|+|++|++|...+..+..||||+|.+.+... +..++||+++++ +.||.|||+|.|.+..... ...
T Consensus 12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~-----~~~~~rT~v~~~-~~~P~wne~f~~~~~~~~~----~~~ 81 (131)
T cd04026 12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPK-----NETKQKTKTIKK-TLNPVWNETFTFDLKPADK----DRR 81 (131)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCC-----CCceecceeecC-CCCCCccceEEEeCCchhc----CCE
Confidence 368999999999999988788999999999974211 135789999876 5899999999999875321 347
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCC
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNP 127 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~ 127 (318)
|.|+|||++.+.+|++||++.++|.++... ....||.|.+.
T Consensus 82 l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~----~~~~w~~L~~~ 122 (131)
T cd04026 82 LSIEVWDWDRTTRNDFMGSLSFGVSELIKM----PVDGWYKLLNQ 122 (131)
T ss_pred EEEEEEECCCCCCcceeEEEEEeHHHhCcC----ccCceEECcCc
Confidence 999999999888899999999999999854 24679998774
No 85
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=2e-15 Score=126.15 Aligned_cols=93 Identities=15% Similarity=0.194 Sum_probs=78.4
Q ss_pred eEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEE
Q 036009 5 SLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVH 84 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~ 84 (318)
.|+|+|++|++|...+.+++.||||+|.+.+. ..+.||+++++ +.||+|||+|.|.+... ....|.
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~--------~~~~kT~~v~~-t~nP~Wne~f~f~~~~~-----~~~~L~ 66 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKK--------KINDRDNYIPN-TLNPVFGKMFELEATLP-----GNSILK 66 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCe--------eccceeeEEEC-CCCCccceEEEEEecCC-----CCCEEE
Confidence 48999999999999998899999999999642 23467887776 69999999999987542 134799
Q ss_pred EEEeecCcCCCCcEEEEEEEeCccccc
Q 036009 85 FELKHEGVMFGDKTIGEVRVPIKDLIS 111 (318)
Q Consensus 85 feV~d~d~~~~Dd~IG~a~VpLsdLl~ 111 (318)
|+|||++.+++|++||++.++|.+..-
T Consensus 67 ~~V~d~d~~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 67 ISVMDYDLLGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred EEEEECCCCCCCceeEEEEEeeccccc
Confidence 999999988899999999999987664
No 86
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.63 E-value=4.5e-15 Score=122.58 Aligned_cols=104 Identities=14% Similarity=0.168 Sum_probs=83.1
Q ss_pred EEEeecCCCCCCCCccCeEEEEEEecCC-CcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEEEEe
Q 036009 10 VMFGKDLKAFNFFQKLTLYVLVSIVSDD-PAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELK 88 (318)
Q Consensus 10 VisA~dL~~~d~~gk~DPYV~VsL~~~~-p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~feV~ 88 (318)
.++|++|...+.++++||||+|.+.+.. .. ...+.||+++++ +.||+|||+|.|.+.... ...|.|+||
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~----~~~~~kT~vi~~-t~nP~wne~f~f~~~~~~-----~~~l~~~V~ 75 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQ----WVEIGRTEVIKN-NLNPDFVTTFTVDYYFEE-----VQKLRFEVY 75 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCc----eEEeccEeEeCC-CCCCCceEEEEEEEEeEe-----eeEEEEEEE
Confidence 5899999999989999999999998642 01 023689999976 599999999999865321 346999999
Q ss_pred ecCc----CCCCcEEEEEEEeCcccccccCceeEEEEEEEeC
Q 036009 89 HEGV----MFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRN 126 (318)
Q Consensus 89 d~d~----~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~ 126 (318)
|++. +.+|++||++.+++.+|+.... ...++.|..
T Consensus 76 d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~---~~~~~~l~~ 114 (120)
T cd04048 76 DVDSKSKDLSDHDFLGEAECTLGEIVSSPG---QKLTLPLKG 114 (120)
T ss_pred EecCCcCCCCCCcEEEEEEEEHHHHhcCCC---cEEEEEccC
Confidence 9986 7789999999999999987542 456777744
No 87
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=2.3e-15 Score=123.16 Aligned_cols=102 Identities=21% Similarity=0.241 Sum_probs=83.1
Q ss_pred CCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEEEEeecCcCCCCcEEE
Q 036009 21 FFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIG 100 (318)
Q Consensus 21 ~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~feV~d~d~~~~Dd~IG 100 (318)
.+|++||||+|.+.+ ....||+++++ +.||+|||.|.|.+.+. ....|.|+|+|++.+ +|++||
T Consensus 9 ~~G~~dPYv~v~v~~---------~~~~kT~v~~~-t~nP~Wne~f~f~v~~~-----~~~~l~i~v~d~~~~-~d~~iG 72 (111)
T cd04052 9 KTGLLSPYAELYLNG---------KLVYTTRVKKK-TNNPSWNASTEFLVTDR-----RKSRVTVVVKDDRDR-HDPVLG 72 (111)
T ss_pred cCCCCCceEEEEECC---------EEEEEEeeecc-CCCCccCCceEEEecCc-----CCCEEEEEEEECCCC-CCCeEE
Confidence 468899999999964 24678998766 68999999999998753 135699999999987 999999
Q ss_pred EEEEeCcccccccCceeEEEEEEEeCCCCCcceEEEEEEEEee
Q 036009 101 EVRVPIKDLISEFNGVVRFVDYEVRNPDGKPNGVLTFSYKVNG 143 (318)
Q Consensus 101 ~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~~G~L~ls~kf~~ 143 (318)
.+.|+|++++.... ....||.|.+ +.+|.|+|++.|.+
T Consensus 73 ~~~v~L~~l~~~~~--~~~~w~~L~~---~~~G~i~~~~~~~p 110 (111)
T cd04052 73 SVSISLNDLIDATS--VGQQWFPLSG---NGQGRIRISALWKP 110 (111)
T ss_pred EEEecHHHHHhhhh--ccceeEECCC---CCCCEEEEEEEEec
Confidence 99999999976432 2357888864 56899999999986
No 88
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.61 E-value=6.4e-15 Score=125.52 Aligned_cols=111 Identities=23% Similarity=0.310 Sum_probs=88.5
Q ss_pred EEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCccc----------
Q 036009 6 LEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILF---------- 75 (318)
Q Consensus 6 L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l---------- 75 (318)
|.|+|++|++|... .++..||||+|.+.... +..++||+++++ +.||+|||+|.|.+.....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~------~~~~~rT~vv~~-t~nP~Wne~f~f~~~~~~~~~~~~~~~~~ 72 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSS------KTDTKRTKVKKK-TNNPRFDEAFYFELTIGFSYEKKSFKVEE 72 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCC------cCCeeccceeeC-CCCCCcceEEEEEcccccccccccccccc
Confidence 67999999999988 68899999999997421 135889999976 6899999999999876310
Q ss_pred CCCcceEEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCC
Q 036009 76 HDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNP 127 (318)
Q Consensus 76 ~d~~~~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~ 127 (318)
.+.....|.|+|||.+.+.++++||++.|+|.++.... ....||.|...
T Consensus 73 ~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~---~~~~W~~L~~~ 121 (137)
T cd08675 73 EDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAG---SHQAWYFLQPR 121 (137)
T ss_pred ccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCC---cccceEecCCc
Confidence 01124579999999998778999999999999988543 24678888765
No 89
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.61 E-value=1.6e-14 Score=125.36 Aligned_cols=118 Identities=18% Similarity=0.229 Sum_probs=92.7
Q ss_pred ceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEE
Q 036009 4 SSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFV 83 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L 83 (318)
..|.|.|++|++|..++ ++||+|.|++ ....||+++.+ +.||.|||.|.|..... ...|
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~---------~~vaRT~v~~~-~~nP~W~E~F~f~~~~~------~~~l 69 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDK---------TLYARTTSKLK-TDTLFWGEHFEFSNLPP------VSVI 69 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECC---------EEEEEEEEEcC-CCCCcceeeEEecCCCc------ccEE
Confidence 56899999999998754 8999999975 24579999866 58999999999986542 2458
Q ss_pred EEEEeecCcCC----CCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCCc----------ceEEEEEEEEeecC
Q 036009 84 HFELKHEGVMF----GDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKP----------NGVLTFSYKVNGMN 145 (318)
Q Consensus 84 ~feV~d~d~~~----~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~----------~G~L~ls~kf~~~~ 145 (318)
.|.|++.+... +|++||.+.|++.+|..+. ....||+|...+++. .+.|+|+++|....
T Consensus 70 ~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~---~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 70 TVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQ---FVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred EEEEEEccCccccccCCcEEEEEEEEHHHhcCCC---cccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 89997544222 5789999999999998543 457899999876553 26899999998643
No 90
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.1e-14 Score=145.41 Aligned_cols=128 Identities=20% Similarity=0.212 Sum_probs=103.7
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
...|.|+|+.|++|...+..+.+||||+++|..+ ++.+.+|+++++ ++||+|||+|.|.|....+. ...
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPd-------k~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l~---~~~ 234 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPD-------KKGKFKTRVHRK-TLNPVFNETFRFEVPYEELS---NRV 234 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCC-------CCCcceeeeeec-CcCCccccceEeecCHHHhc---cCE
Confidence 4679999999999999996678999999999975 247899999976 68999999999998775443 568
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCC---CCCcceEEEEEEEEeec
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNP---DGKPNGVLTFSYKVNGM 144 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~---sGk~~G~L~ls~kf~~~ 144 (318)
|.|.|||.|+|.+|++||++.++|..+..... ...|..|... +.+..|+|.|++++.+.
T Consensus 235 L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~---~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~ 296 (421)
T KOG1028|consen 235 LHLSVYDFDRFSRHDFIGEVILPLGEVDLLST---TLFWKDLQPSSTDSEELAGELLLSLCYLPT 296 (421)
T ss_pred EEEEEEecCCcccccEEEEEEecCcccccccc---ceeeeccccccCCcccccceEEEEEEeecC
Confidence 99999999999999999999999887765432 3456666553 22223799988888876
No 91
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.58 E-value=1e-14 Score=127.23 Aligned_cols=109 Identities=23% Similarity=0.339 Sum_probs=82.5
Q ss_pred CCceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcch------------------h-cCCceEEcccccCCCCCCeE
Q 036009 2 ESSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKT------------------L-EQKQKHRTPTDKEGDGNPEW 62 (318)
Q Consensus 2 ~~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~------------------~-~~~~k~KTkv~k~~g~NPvW 62 (318)
....|.|+|++|++|...+.++.+||||+|.+........ + ......+|+++++ +.||+|
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~W 104 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ-TLNPVW 104 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecC-CCCCcc
Confidence 3568999999999999999889999999999963211000 0 0013478998866 699999
Q ss_pred eeEEEEEccCcccCCCcceEEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEE
Q 036009 63 NHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEV 124 (318)
Q Consensus 63 NEtf~F~v~~~~l~d~~~~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~L 124 (318)
||+|.|.+... ....|.|+|||++ |++||++.++|++|... + ...||.|
T Consensus 105 nE~F~f~v~~~-----~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~--~--~d~W~~L 153 (153)
T cd08676 105 NETFRFEVEDV-----SNDQLHLDIWDHD----DDFLGCVNIPLKDLPSC--G--LDSWFKL 153 (153)
T ss_pred ccEEEEEeccC-----CCCEEEEEEEecC----CCeEEEEEEEHHHhCCC--C--CCCeEeC
Confidence 99999998652 1347999999986 89999999999999832 2 2466654
No 92
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.57 E-value=1.2e-15 Score=150.46 Aligned_cols=110 Identities=20% Similarity=0.192 Sum_probs=93.7
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
...|.|+|..|++|...|.+|-+||||++.|-.+.. . ..++||++++. ++||+|||+|.|.+.... . .+.
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~-~----~sKqKTkTik~-~LNP~wNEtftf~Lkp~D---k-drR 248 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPK-N----ESKQKTKTIKA-TLNPVWNETFTFKLKPSD---K-DRR 248 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCc-c----hhhhhhhhhhh-hcCccccceeEEeccccc---c-cce
Confidence 357899999999999999999999999999987432 2 45899999987 599999999999998863 2 357
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeC
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRN 126 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~ 126 (318)
|.|||||+|+..+|+|+|...+.+++|.... ...||.|.+
T Consensus 249 lsiEvWDWDrTsRNDFMGslSFgisEl~K~p----~~GWyKlLs 288 (683)
T KOG0696|consen 249 LSIEVWDWDRTSRNDFMGSLSFGISELQKAP----VDGWYKLLS 288 (683)
T ss_pred eEEEEecccccccccccceecccHHHHhhcc----hhhHHHHhh
Confidence 9999999999999999999999999998765 245676665
No 93
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.56 E-value=4.8e-14 Score=118.35 Aligned_cols=109 Identities=18% Similarity=0.250 Sum_probs=78.7
Q ss_pred EEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEE
Q 036009 6 LEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHF 85 (318)
Q Consensus 6 L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~f 85 (318)
|.|+|++|++|+ +.+||||++.+.+... ...+.||+++++ ++||+|||+|.|.+.. ...|+|
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~-----~~~~~KTk~i~~-TlnPvWnE~F~i~l~~-------s~~L~~ 62 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGY-----FVKKAKTRVCRD-TTEPNWNEEFEIELEG-------SQTLRI 62 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccc-----cceeeeeeeecC-CCCCccceEEEEEeCC-------CCEEEE
Confidence 689999999996 4589999999975211 135799999976 6999999999999864 247999
Q ss_pred EEeec-------CcCCCCcEEEEEEEeCc--ccccccCceeEEEEEEEeCCCCCcceEEEEEEEE
Q 036009 86 ELKHE-------GVMFGDKTIGEVRVPIK--DLISEFNGVVRFVDYEVRNPDGKPNGVLTFSYKV 141 (318)
Q Consensus 86 eV~d~-------d~~~~Dd~IG~a~VpLs--dLl~~~~g~~~~~sy~Lr~~sGk~~G~L~ls~kf 141 (318)
.|||+ +.+..|++||.+.|.|. .+... + .+...+.|. + =.|+++++|
T Consensus 63 ~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~~~~~~~--~-~~~~~~~~~---~---~~~~~s~~~ 118 (118)
T cd08686 63 LCYEKCYSKVKLDGEGTDAIMGKGQIQLDPQSLQTK--K-WQEKVISMN---G---ITVNLSIKF 118 (118)
T ss_pred EEEEcccccccccccCcccEEEEEEEEECHHHhccC--C-eeEEEEEec---C---EEEEEEEeC
Confidence 99997 45667999988888874 23222 1 233444431 1 267777765
No 94
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.55 E-value=7.3e-14 Score=113.20 Aligned_cols=98 Identities=22% Similarity=0.240 Sum_probs=76.3
Q ss_pred EEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEEEE
Q 036009 8 IKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFEL 87 (318)
Q Consensus 8 VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~feV 87 (318)
+-.++|++|...+.++++||||+|++.+.+.. ...++||+++++ ++||+|| +|.|.+..-...+ ....|.|+|
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~----~~~~~kT~vi~~-t~nP~Wn-~f~~~~~~l~~~~-~~~~l~~~V 76 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGT----WVLVYRTEVIKN-TLNPVWK-PFTIPLQKLCNGD-YDRPIKIEV 76 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCC----EEEEEeeeEecc-CCCCceE-EEEEEHHHhcCCC-cCCEEEEEE
Confidence 44689999999999999999999998753211 124689999976 5999999 6888764311011 135799999
Q ss_pred eecCcCCCCcEEEEEEEeCcccccc
Q 036009 88 KHEGVMFGDKTIGEVRVPIKDLISE 112 (318)
Q Consensus 88 ~d~d~~~~Dd~IG~a~VpLsdLl~~ 112 (318)
||++.+++|++||++.++|.+|...
T Consensus 77 ~d~d~~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 77 YDYDSSGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred EEeCCCCCCcEEEEEEEEHHHHhcC
Confidence 9999888999999999999999844
No 95
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.52 E-value=3.1e-14 Score=161.49 Aligned_cols=119 Identities=17% Similarity=0.358 Sum_probs=98.0
Q ss_pred ceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEE
Q 036009 4 SSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFV 83 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L 83 (318)
|.|.|+|++|+||. +.++++||||+|.+.. ..++||+++++ +.||+|||.|.|.+.+... +..|
T Consensus 1980 G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~---------~~~~kTkvvk~-~~nP~Wne~f~~~~~~p~~----~~~l 2043 (2102)
T PLN03200 1980 GSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN---------GPPRQTKVVSH-SSSPEWKEGFTWAFDSPPK----GQKL 2043 (2102)
T ss_pred cceEEEEeeccccc--cccCCCCCeEEEEECC---------CCcccccccCC-CCCCCcccceeeeecCCCC----CCce
Confidence 78999999999998 4489999999999974 23779999987 5999999999988877532 3469
Q ss_pred EEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCCcceE---EEEEEEEee
Q 036009 84 HFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKPNGV---LTFSYKVNG 143 (318)
Q Consensus 84 ~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~~G~---L~ls~kf~~ 143 (318)
+|+|||+|.| +++.||.+.|+|.++..+. ....+|+|.+ +|+..|. |.+.+++.+
T Consensus 2044 ~iev~d~d~f-~kd~~G~~~i~l~~vv~~~---~~~~~~~L~~-~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2044 HISCKSKNTF-GKSSLGKVTIQIDRVVMEG---TYSGEYSLNP-ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred EEEEEecCcc-CCCCCceEEEEHHHHhcCc---eeeeeeecCc-ccccCCCcceEEEEEEecC
Confidence 9999999977 5568999999999999764 3568899985 3455666 999988864
No 96
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.51 E-value=1.6e-13 Score=103.68 Aligned_cols=85 Identities=27% Similarity=0.385 Sum_probs=72.2
Q ss_pred EEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEE
Q 036009 6 LEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHF 85 (318)
Q Consensus 6 L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~f 85 (318)
|+|+|++|++|...+..+..|+||+|.+.+.. ..+++|+++++ +.||.|||+|.|.+....+ ..|.|
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~-------~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~-----~~l~~ 67 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSE-------STKYKTKVKKN-TSNPVWNEEFEFPLDDPDL-----DSLSF 67 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTT-------CEEEEECCBSS-BSSEEEEEEEEEEESHGCG-----TEEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceee-------eeeeeeeeeec-cccceeeeeeeeeeecccc-----cceEE
Confidence 78999999999998878899999999998631 14699999876 4899999999999776532 34999
Q ss_pred EEeecCcCCCCcEEEEEE
Q 036009 86 ELKHEGVMFGDKTIGEVR 103 (318)
Q Consensus 86 eV~d~d~~~~Dd~IG~a~ 103 (318)
+|||.+.+.+|++||+|+
T Consensus 68 ~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 68 EVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp EEEEETSSSSEEEEEEEE
T ss_pred EEEECCCCCCCCEEEEEC
Confidence 999999888899999974
No 97
>PLN02223 phosphoinositide phospholipase C
Probab=99.47 E-value=6.1e-13 Score=135.47 Aligned_cols=111 Identities=23% Similarity=0.381 Sum_probs=88.9
Q ss_pred ceEEEEEEEeecCC-----CCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCC
Q 036009 4 SSLEIKVMFGKDLK-----AFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDC 78 (318)
Q Consensus 4 ~~L~VtVisA~dL~-----~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~ 78 (318)
++|.|+|++|.+|. ..+.....||||+|.|.|. +.. ..++||++ ++||.||+|||+|.|.|....
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gv-p~D----~~~~kT~v-~nNg~nPvWne~F~F~i~~PE---- 478 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGV-PHD----EKIMKTTV-KNNEWKPTWGEEFTFPLTYPD---- 478 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeec-cCC----cceeEEEe-CCCCcCceecceeEEEEEccC----
Confidence 57999999999874 1133457899999999874 221 34667865 577899999999999987653
Q ss_pred cceEEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCCc
Q 036009 79 GHIFVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKP 131 (318)
Q Consensus 79 ~~~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~ 131 (318)
...|+|+|+|+|...+|+|||++.+|+..|..+. .+.+|++.+|+.
T Consensus 479 -LAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy------R~VpL~~~~g~~ 524 (537)
T PLN02223 479 -LALISFEVYDYEVSTADAFCGQTCLPVSELIEGI------RAVPLYDERGKA 524 (537)
T ss_pred -ceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc------eeEeccCCCcCC
Confidence 4579999999998778999999999999998765 567999988875
No 98
>PLN02952 phosphoinositide phospholipase C
Probab=99.44 E-value=1.2e-12 Score=135.36 Aligned_cols=122 Identities=17% Similarity=0.298 Sum_probs=96.6
Q ss_pred ceEEEEEEEeecCCC------CCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCC
Q 036009 4 SSLEIKVMFGKDLKA------FNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHD 77 (318)
Q Consensus 4 ~~L~VtVisA~dL~~------~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d 77 (318)
++|.|+|++|.+|.. .+.+...|+||+|.+.|...+ ..+.||+++++| .||+|||+|.|.+....
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D-----~~~~kTkvi~nN-~nPvWnE~F~F~i~~PE--- 540 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPAD-----NAKKKTKIIEDN-WYPAWNEEFSFPLTVPE--- 540 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCC-----CcceeeeeccCC-CCcccCCeeEEEEEcCC---
Confidence 579999999998742 122345699999999974222 457899999775 89999999999987642
Q ss_pred CcceEEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCCcceEEEEEEEEe
Q 036009 78 CGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKPNGVLTFSYKVN 142 (318)
Q Consensus 78 ~~~~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~~G~L~ls~kf~ 142 (318)
...|+|+|+|+|...+|+|||++.+||..|..+. .+++|++.+|+..+.++|-++|.
T Consensus 541 --LAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy------R~VpL~~~~G~~l~~a~Llv~f~ 597 (599)
T PLN02952 541 --LALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI------RSVPLHDKKGEKLKNVRLLMRFI 597 (599)
T ss_pred --ccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc------eeEeCcCCCCCCCCCEEEEEEEE
Confidence 3579999999998888999999999999998765 47899999888766666655553
No 99
>PLN02270 phospholipase D alpha
Probab=99.38 E-value=4.3e-12 Score=134.05 Aligned_cols=126 Identities=15% Similarity=0.234 Sum_probs=103.0
Q ss_pred ceEEEEEEEeecCCCCC-----------------C-CCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeE
Q 036009 4 SSLEIKVMFGKDLKAFN-----------------F-FQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHG 65 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d-----------------~-~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEt 65 (318)
+.|+|+|+.|++|++.+ . .+.+|+||+|.|.+ .+..||+++.+...||+|||.
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~---------a~v~rtr~~~~~~~~p~w~e~ 78 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEK---------ARVGRTRKIENEPKNPRWYES 78 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCC---------cEEEEEeecCCCCCCCccccc
Confidence 78999999999998521 0 13579999999975 367899999765579999999
Q ss_pred EEEEccCcccCCCcceEEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCCc-ce--EEEEEEEEe
Q 036009 66 MQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKP-NG--VLTFSYKVN 142 (318)
Q Consensus 66 f~F~v~~~~l~d~~~~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~-~G--~L~ls~kf~ 142 (318)
|.+.+... ...|.|.|+|.+ +.+..+||.+.||+.+|+.+. ....||+|.+.+||+ ++ +|+|+++|.
T Consensus 79 f~i~~ah~------~~~v~f~vkd~~-~~g~~~ig~~~~p~~~~~~g~---~i~~~~~~~~~~~~p~~~~~~~~~~~~f~ 148 (808)
T PLN02270 79 FHIYCAHM------ASNIIFTVKDDN-PIGATLIGRAYIPVEEILDGE---EVDRWVEILDNDKNPIHGGSKIHVKLQYF 148 (808)
T ss_pred eEEeeccC------cceEEEEEecCC-ccCceEEEEEEEEHHHhcCCC---ccccEEeccCCCCCcCCCCCEEEEEEEEE
Confidence 99999874 356999999988 567789999999999999764 356899999999885 33 899999999
Q ss_pred ecCCCC
Q 036009 143 GMNSAI 148 (318)
Q Consensus 143 ~~~~~~ 148 (318)
+...+.
T Consensus 149 ~~~~~~ 154 (808)
T PLN02270 149 EVTKDR 154 (808)
T ss_pred EcccCc
Confidence 865543
No 100
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.35 E-value=8.9e-12 Score=128.80 Aligned_cols=121 Identities=18% Similarity=0.312 Sum_probs=93.2
Q ss_pred ceEEEEEEEeecCCC------CCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCC
Q 036009 4 SSLEIKVMFGKDLKA------FNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHD 77 (318)
Q Consensus 4 ~~L~VtVisA~dL~~------~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d 77 (318)
.+|.|+|+++.++.. .+.+...||||+|.|.|. +.. ..+.||++. +++.||+|||+|.|.+....
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gv-p~D----~~~~kT~v~-~n~~nP~Wneef~F~l~vPE--- 539 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGA-PVD----EVMEKTKIE-YDTWTPIWNKEFIFPLAVPE--- 539 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEEC-CCC----Ccccceecc-CCCCCCccCCeeEEEEEcCc---
Confidence 579999999998641 123456799999999973 322 346788876 45799999999999987643
Q ss_pred CcceEEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCCc--ceEEEEEEEE
Q 036009 78 CGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKP--NGVLTFSYKV 141 (318)
Q Consensus 78 ~~~~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~--~G~L~ls~kf 141 (318)
...|+|+|+|+|...+|+|||++.|||..|..+. ...+|++.+|.. .-.|.+.+.|
T Consensus 540 --LAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy------R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 540 --LALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI------HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred --eeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc------ceEeccCCCcCCCCCCeeEEEEEe
Confidence 4689999999997788999999999999998765 467899988764 2345555544
No 101
>PLN02228 Phosphoinositide phospholipase C
Probab=99.35 E-value=1.3e-11 Score=126.95 Aligned_cols=124 Identities=19% Similarity=0.290 Sum_probs=97.1
Q ss_pred ceEEEEEEEeecCCC----C--CCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeE-eeEEEEEccCcccC
Q 036009 4 SSLEIKVMFGKDLKA----F--NFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEW-NHGMQFDLKGILFH 76 (318)
Q Consensus 4 ~~L~VtVisA~dL~~----~--d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvW-NEtf~F~v~~~~l~ 76 (318)
..|.|+|++|.+|.. . +.+...|+||+|.|.+...+ ..+.||+++++ +.||+| ||+|.|.+....
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D-----~~~~rTk~~~n-~~nP~W~~e~f~F~~~~pE-- 502 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRD-----TVSYRTETAVD-QWFPIWGNDEFLFQLRVPE-- 502 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCC-----CCcceeeccCC-CCCceECCCeEEEEEEcCc--
Confidence 369999999998731 1 22345899999999874221 35679999866 589999 999999987642
Q ss_pred CCcceEEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCCc--ceEEEEEEEEeec
Q 036009 77 DCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKP--NGVLTFSYKVNGM 144 (318)
Q Consensus 77 d~~~~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~--~G~L~ls~kf~~~ 144 (318)
...|+|+|+|+|...+|+|||++.|||..|..+. +.++|++.+|+. ...|.+.+.+.+.
T Consensus 503 ---LA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY------R~VpL~~~~G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 503 ---LALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV------RAVRLHDRAGKAYKNTRLLVSFALDPP 563 (567)
T ss_pred ---eeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe------eEEEccCCCCCCCCCeEEEEEEEEcCc
Confidence 4689999999987788999999999999998764 467999988874 4568777777654
No 102
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.34 E-value=1.2e-11 Score=94.68 Aligned_cols=96 Identities=27% Similarity=0.368 Sum_probs=79.1
Q ss_pred eEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEE
Q 036009 5 SLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVH 84 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~ 84 (318)
.|.|+|++|++|......+..++||+|++.... ....+|++++++ .||.|||+|.|.+.... ...|.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~-------~~~~~T~~~~~~-~~P~w~e~~~~~~~~~~-----~~~l~ 67 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDP-------KEKKKTKVVKNT-LNPVWNETFEFEVPPPE-----LAELE 67 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc-------cceEeeeEecCC-CCCcccceEEEEecCcc-----cCEEE
Confidence 478999999999988766789999999997521 147899988764 69999999999997631 35799
Q ss_pred EEEeecCcCCCCcEEEEEEEeCccccccc
Q 036009 85 FELKHEGVMFGDKTIGEVRVPIKDLISEF 113 (318)
Q Consensus 85 feV~d~d~~~~Dd~IG~a~VpLsdLl~~~ 113 (318)
|+||+.+...++.+||.+.++|.++..+.
T Consensus 68 i~v~~~~~~~~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 68 IEVYDKDRFGRDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred EEEEecCCccCCceeEEEEEEHHHcccCc
Confidence 99999887767899999999999887653
No 103
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.34 E-value=1.3e-11 Score=127.33 Aligned_cols=121 Identities=16% Similarity=0.267 Sum_probs=93.5
Q ss_pred ceEEEEEEEeecCC----C--CCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCC
Q 036009 4 SSLEIKVMFGKDLK----A--FNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHD 77 (318)
Q Consensus 4 ~~L~VtVisA~dL~----~--~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d 77 (318)
++|.|+|+++.++. . .+.+...|+||+|.|.|...+ ..+.||+++++| .||+|||+|.|.+....
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D-----~~~~rTk~v~nn-~nP~W~e~f~F~i~~Pe--- 522 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGD-----TVMKKTKTLEDN-WIPAWDEVFEFPLTVPE--- 522 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCC-----cceeeeEecCCC-CCcccCCeeEEEEEcCc---
Confidence 57999999998753 2 122456899999999874221 357899999876 79999999999987542
Q ss_pred CcceEEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCCc-c-eEEEEEEEE
Q 036009 78 CGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKP-N-GVLTFSYKV 141 (318)
Q Consensus 78 ~~~~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~-~-G~L~ls~kf 141 (318)
...|+|+|+|+|...+|+|||++.|||..|..+. +..+|++.+|.. . -.|.+.+.|
T Consensus 523 --LAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy------R~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 523 --LALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGI------RAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred --eeEEEEEEEECCCCCCCcEEEEEEcchhhhhCcc------ceEEccCCCcCCCCCeeEEEEEEe
Confidence 4689999999987778999999999999998764 467999988874 3 355555544
No 104
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=2.2e-12 Score=132.12 Aligned_cols=123 Identities=21% Similarity=0.268 Sum_probs=97.1
Q ss_pred ceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEE
Q 036009 4 SSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFV 83 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L 83 (318)
-.+.+||+.|.+|..+|..|++||||++.++ +.+.||+++.. .+||+|||+|+|...+.. ..|
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~----------ktkrrtrti~~-~lnpvw~ekfhfechnst------dri 357 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVG----------KTKRRTRTIHQ-ELNPVWNEKFHFECHNST------DRI 357 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeec----------ccchhhHhhhh-ccchhhhhheeeeecCCC------cee
Confidence 4689999999999999999999999999996 35889999876 599999999999998752 359
Q ss_pred EEEEeecCcC-----------CCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCC--cceEEEEEEEEeecCCCC
Q 036009 84 HFELKHEGVM-----------FGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGK--PNGVLTFSYKVNGMNSAI 148 (318)
Q Consensus 84 ~feV~d~d~~-----------~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk--~~G~L~ls~kf~~~~~~~ 148 (318)
+|.|||+|.- -+|+|||+..|-+..|..+ -.+||.|.+...| +.|.|+|.+.+.-.+.+.
T Consensus 358 kvrvwded~dlksklrqkl~resddflgqtvievrtlsge-----mdvwynlekrtdksavsgairlhisveikgeek 430 (1283)
T KOG1011|consen 358 KVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLSGE-----MDVWYNLEKRTDKSAVSGAIRLHISVEIKGEEK 430 (1283)
T ss_pred EEEEecCcccHHHHHHHHhhhcccccccceeEEEEecccc-----hhhhcchhhccchhhccceEEEEEEEEEcCccc
Confidence 9999998732 2589999999998877543 3589998765443 578776666555444433
No 105
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.30 E-value=1.1e-11 Score=129.09 Aligned_cols=122 Identities=22% Similarity=0.358 Sum_probs=98.4
Q ss_pred eEEEEEEEeecCC-CCCC--C-CccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcc
Q 036009 5 SLEIKVMFGKDLK-AFNF--F-QKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGH 80 (318)
Q Consensus 5 ~L~VtVisA~dL~-~~d~--~-gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~ 80 (318)
+|.|+|++++++. +.+. + ...||||.|+|.|. +.. ..+.+|+++++|+-||.|+|+|.|.|.... .
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gv-p~D----~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPE-----L 686 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGV-PAD----CAEQKTKVVKNNGFNPIWDEEFEFQLSVPE-----L 686 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEccc-ccc----hhhhhceeeccCCcCcccCCeEEEEEeccc-----e
Confidence 6999999999554 3322 2 46899999999874 322 468999988899999999999999998763 4
Q ss_pred eEEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCCc--ceEEEEEEEEe
Q 036009 81 IFVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKP--NGVLTFSYKVN 142 (318)
Q Consensus 81 ~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~--~G~L~ls~kf~ 142 (318)
..|+|+|.|.|...+|+|+|+.++|+.+|..+. +..+|.+..|+. .-.|.+.+++.
T Consensus 687 AliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~Gy------RhVpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 687 ALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGY------RHVPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred eEEEEEEEecCCCCcccccceeeccHHHhhCce------eeeeecCCCCccccceeEEEEEEEe
Confidence 679999999998888999999999999998864 467888887773 55677776664
No 106
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.30 E-value=1.9e-11 Score=104.67 Aligned_cols=101 Identities=13% Similarity=0.081 Sum_probs=80.0
Q ss_pred eEEEEEEEeecCCC--CCCCC--ccCeEEEEEEecCCCcchhcCCceEEcccccCCCCC--CeEeeEEEEEccCccc---
Q 036009 5 SLEIKVMFGKDLKA--FNFFQ--KLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGN--PEWNHGMQFDLKGILF--- 75 (318)
Q Consensus 5 ~L~VtVisA~dL~~--~d~~g--k~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~N--PvWNEtf~F~v~~~~l--- 75 (318)
.|+|.|..|+++.. .+..| .+|+||+++|.+.. ..+++|.|+.+ .+| |+||+.|.|.+.....
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~-------~~kqkTDVHyr-slnG~~~FNwRfvF~~~~~~~~~~ 72 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLE-------EDKQKTDVHYR-SLDGEGNFNWRFVFPFDYLPAEKK 72 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCc-------ccccccceEEe-cCCCCcEEeEEEEEeeecCCccce
Confidence 48999999999654 33355 49999999998741 36899999987 488 9999999988765211
Q ss_pred ---------------CCCcceEEEEEEeecCcCCCCcEEEEEEEeCccccccc
Q 036009 76 ---------------HDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLISEF 113 (318)
Q Consensus 76 ---------------~d~~~~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~ 113 (318)
+......|.|+|||.|.+..|++||++.++|..+....
T Consensus 73 ~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 73 IVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred eEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 11224689999999999999999999999999887654
No 107
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.29 E-value=3e-11 Score=91.40 Aligned_cols=90 Identities=29% Similarity=0.415 Sum_probs=76.4
Q ss_pred EEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEE
Q 036009 6 LEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHF 85 (318)
Q Consensus 6 L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~f 85 (318)
|.|.|++|++|.........++||+|.+.+ ....+|+++++ +.||.||+.|.|.+... ....|.|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~---------~~~~~T~~~~~-~~~P~w~~~~~~~~~~~-----~~~~l~i 65 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG---------KQKFKTKVVKN-TLNPVWNETFEFPVLDP-----ESDTLTV 65 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc---------CceEecceeCC-CCCCcccceEEEEccCC-----CCCEEEE
Confidence 579999999998876667899999999974 24789998866 48999999999999762 1356999
Q ss_pred EEeecCcCCCCcEEEEEEEeCcccc
Q 036009 86 ELKHEGVMFGDKTIGEVRVPIKDLI 110 (318)
Q Consensus 86 eV~d~d~~~~Dd~IG~a~VpLsdLl 110 (318)
+|++.+....+++||.+.+++.++.
T Consensus 66 ~v~~~~~~~~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 66 EVWDKDRFSKDDFLGEVEIPLSELL 90 (102)
T ss_pred EEEecCCCCCCceeEEEEEeHHHhh
Confidence 9999987777899999999999987
No 108
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.26 E-value=1.8e-11 Score=126.42 Aligned_cols=151 Identities=19% Similarity=0.240 Sum_probs=118.6
Q ss_pred ceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEE
Q 036009 4 SSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFV 83 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L 83 (318)
..|.|+|..|++|...+..|..|+||+|.++.. ...||.|+.+ ++.|.|.|.|.|.|... -..|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E---------~v~RT~tv~k-sL~PF~gEe~~~~iP~~------F~~l 68 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQE---------EVCRTATVEK-SLCPFFGEEFYFEIPRT------FRYL 68 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecch---------hhhhhhhhhh-hcCCccccceEEecCcc------eeeE
Confidence 569999999999999999999999999999853 4789999977 59999999999999863 2469
Q ss_pred EEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCCcceEEEEEEEEeecCCCCCCCCCCCcceeeeee
Q 036009 84 HFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKPNGVLTFSYKVNGMNSAIGTDYPGTTQITGFSI 163 (318)
Q Consensus 84 ~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~~G~L~ls~kf~~~~~~~~~~~~~~~~~~g~~v 163 (318)
.|-|||+| +.+|+.||.+.|.=.+|-... |...+.+++-.+++..+.|+|+|++++.+........-.....-+|.++
T Consensus 69 ~fYv~D~d-~~~D~~IGKvai~re~l~~~~-~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~ 146 (800)
T KOG2059|consen 69 SFYVWDRD-LKRDDIIGKVAIKREDLHMYP-GKDTWFSLQPVDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPI 146 (800)
T ss_pred EEEEeccc-cccccccceeeeeHHHHhhCC-CCccceeccccCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCce
Confidence 99999999 899999999999877777654 4334455555678889999999999999987766533222223356666
Q ss_pred ccCCCCCCC
Q 036009 164 VNDSQRPGY 172 (318)
Q Consensus 164 ~~~~~~~~s 172 (318)
...+.++.+
T Consensus 147 ~~~~~dp~~ 155 (800)
T KOG2059|consen 147 INGQCDPFA 155 (800)
T ss_pred eCCCCCcce
Confidence 655544443
No 109
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.26 E-value=2.5e-11 Score=130.80 Aligned_cols=126 Identities=20% Similarity=0.244 Sum_probs=103.3
Q ss_pred CceEEEEEEEeecCCCCC--CCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcc
Q 036009 3 SSSLEIKVMFGKDLKAFN--FFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGH 80 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d--~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~ 80 (318)
.|+|.|+|.+|++|+..+ ..+..|||+++.+.+ ....||+++++ +.||+|||+|.+-|.. +.
T Consensus 435 IGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~---------r~~gkT~v~~n-t~nPvwNEt~Yi~lns--~~---- 498 (1227)
T COG5038 435 IGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSD---------RVIGKTRVKKN-TLNPVWNETFYILLNS--FT---- 498 (1227)
T ss_pred eEEEEEEEeeccCcccccccccCCCCceEEEEecc---------ccCCccceeec-cCCccccceEEEEecc--cC----
Confidence 478999999999999988 468999999999764 23569999865 6999999999999874 32
Q ss_pred eEEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCCcceEEEEEEEEeecCCC
Q 036009 81 IFVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKPNGVLTFSYKVNGMNSA 147 (318)
Q Consensus 81 ~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~~G~L~ls~kf~~~~~~ 147 (318)
..|.++|||.+.+..|+++|.+.++|..|..+.. ....-++++. +++..|.|.+.++|.+.-.+
T Consensus 499 d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~--~~ne~~e~~~-~~k~vGrL~yDl~ffp~~e~ 562 (1227)
T COG5038 499 DPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPV--KKNELYEFLR-NTKNVGRLTYDLRFFPVIED 562 (1227)
T ss_pred CceeEEEEeccccCCcceeeeEEechHHhhhccc--cccceeeeec-cCccceEEEEeeeeecccCC
Confidence 3699999998888999999999999998887642 3344566654 47789999999999986543
No 110
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=5.7e-11 Score=118.93 Aligned_cols=97 Identities=19% Similarity=0.286 Sum_probs=83.3
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
.+.|+|.|+.|++|+..+..+..|+||++.+..+.. +..++||.+.++ +.||+|||+|.|.|....++ ...
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~-----~~~kkkT~~~~~-~~npv~nesf~F~vp~~~l~---~~~ 367 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDK-----RLSKKKTSVKKK-TLNPVFNETFVFDVPPEQLA---EVS 367 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCc-----eeeeeeeecccC-CCCCcccccEEEeCCHHHhh---eeE
Confidence 478999999999999999889999999999986532 356888988766 69999999999999876554 468
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCcc
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKD 108 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsd 108 (318)
|.|+|||++.+.++++||.+.+....
T Consensus 368 l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 368 LELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred EEEEEEEcccccccceeeEEEecCCC
Confidence 99999999999999999998887764
No 111
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.12 E-value=2.5e-10 Score=119.48 Aligned_cols=107 Identities=21% Similarity=0.351 Sum_probs=87.7
Q ss_pred ceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEe-eEEEEEccCcccCCCcceE
Q 036009 4 SSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWN-HGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWN-Etf~F~v~~~~l~d~~~~~ 82 (318)
-+|.|.||.|+.|.+.+ .+..+|||+|.|-|..-+ ..+++|+++.+||+||+|| |+|+|.|.+.. -.+
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~D-----t~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe-----~A~ 1133 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYD-----TNKFKTTVVNDNGLNPIWNPEKFTFEIYNPE-----FAF 1133 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccC-----CCceEEEEeccCCCCCCCCCcceEEEeeCCc-----eEE
Confidence 36889999999999665 466789999999875443 4578888888889999999 99999998863 468
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCC
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNP 127 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~ 127 (318)
|+|.|+++|.+....|||++++|+..|..+. .+..|++.
T Consensus 1134 lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf------RsVpLkN~ 1172 (1267)
T KOG1264|consen 1134 LRFVVYEEDMFSDPNFLAQATYPVKAIKSGF------RSVPLKNG 1172 (1267)
T ss_pred EEEEEecccccCCcceeeeeecchhhhhccc------eeeecccC
Confidence 9999999996655669999999999988754 56777764
No 112
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.06 E-value=4.3e-10 Score=121.50 Aligned_cols=128 Identities=13% Similarity=0.121 Sum_probs=100.2
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
++-|+|.+++|.+|+..|..+.+||||++.+.+ +..+||+++|+ ++||+|||.|.+.|.... ...
T Consensus 1039 sG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~---------k~vyktkv~Kk-tlNPvwNEe~~i~v~~r~-----~D~ 1103 (1227)
T COG5038 1039 SGYLTIMLRSGENLPSSDENGYSDPFVKLFLNE---------KSVYKTKVVKK-TLNPVWNEEFTIEVLNRV-----KDV 1103 (1227)
T ss_pred cCcEEEEEeccCCCcccccCCCCCceEEEEecc---------eecccccchhc-cCCCCccccceEeeeccc-----cce
Confidence 578999999999999999999999999999975 24799999988 599999999999998653 236
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCC-CCcceEEEEEEEEeecCCCC
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPD-GKPNGVLTFSYKVNGMNSAI 148 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~s-Gk~~G~L~ls~kf~~~~~~~ 148 (318)
|.|.|+|++.-.+|++||.+.++|..|..+.. ......|-.+. +...|.|+..+.|.......
T Consensus 1104 ~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~---~n~~i~ldgk~~~~~~g~~~~~~~~r~~~~~n 1167 (1227)
T COG5038 1104 LTINVNDWDSGEKNDLLGTAEIDLSKLEPGGT---TNSNIPLDGKTFIVLDGTLHPGFNFRSKYALN 1167 (1227)
T ss_pred EEEEEeecccCCCccccccccccHhhcCcCCc---cceeeeccCcceEecccEeecceecchhhhhc
Confidence 88999999987889999999999998886642 22333333222 34567777777776654443
No 113
>PLN02352 phospholipase D epsilon
Probab=98.96 E-value=4.2e-09 Score=111.27 Aligned_cols=119 Identities=18% Similarity=0.225 Sum_probs=91.4
Q ss_pred ceEEEEEEEeecCCCC----CCC-CccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCC
Q 036009 4 SSLEIKVMFGKDLKAF----NFF-QKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDC 78 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~----d~~-gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~ 78 (318)
++|+|||..|+-+... ... ...|+||+|.|.+ .+..|| ++ ..||+|||.|.+.+....
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~---------~~v~rt---~~-~~~p~w~e~f~i~~ah~~---- 72 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGN---------KKVAKT---SH-EYDRVWNQTFQILCAHPL---- 72 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCC---------cEEecC---CC-CCCCccccceeEEeeeec----
Confidence 6899999999854332 111 1239999999975 356788 33 469999999999998641
Q ss_pred cceEEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCCc-ce-EEEEEEEEeecCCC
Q 036009 79 GHIFVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKP-NG-VLTFSYKVNGMNSA 147 (318)
Q Consensus 79 ~~~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~-~G-~L~ls~kf~~~~~~ 147 (318)
...|.|.|+| +..+||.+.||+.+|+.+.. ....||+|.+.+||+ +| +|+|+++|.+...+
T Consensus 73 -~~~~~f~vk~-----~~~~ig~~~~p~~~~~~g~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 73 -DSTITITLKT-----KCSILGRFHIQAHQIVTEAS--FINGFFPLIMENGKPNPELKLRFMLWFRPAELE 135 (758)
T ss_pred -CCcEEEEEec-----CCeEEEEEEEEHHHhhCCCc--ccceEEEcccCCCCCCCCCEEEEEEEEEEhhhC
Confidence 1358999988 46799999999999998642 357899999999885 55 89999999987654
No 114
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.90 E-value=3.3e-09 Score=87.60 Aligned_cols=86 Identities=17% Similarity=0.314 Sum_probs=69.5
Q ss_pred EEEEEEEeecCCCCC---CCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 6 LEIKVMFGKDLKAFN---FFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 6 L~VtVisA~dL~~~d---~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
|.|+|.+|+||.... ++++.|+||+|.+++ ..+.||++. .|+.|||+|.|.|.. ...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved---------~~kaRTr~s----rnd~WnE~F~i~Vdk-------~nE 60 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVED---------VERARTKPS----RNDRWNEDFEIPVEK-------NNE 60 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECC---------EEEEeccCC----CCCcccceEEEEecC-------CcE
Confidence 689999999998877 567899999999975 358888873 799999999999953 246
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCcccccc
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKDLISE 112 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~ 112 (318)
|.|.|||... ....-||..=|.|++|..+
T Consensus 61 iel~VyDk~~-~~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 61 EEVIVYDKGG-DQPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred EEEEEEeCCC-CeecceeeehhhHHHHHHH
Confidence 9999999741 2234789888999998865
No 115
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.81 E-value=1.5e-08 Score=103.48 Aligned_cols=126 Identities=18% Similarity=0.242 Sum_probs=103.4
Q ss_pred ceEEEEEEEeecCCCCCCC-CccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEee-EEEEEccCcccCCCcce
Q 036009 4 SSLEIKVMFGKDLKAFNFF-QKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNH-GMQFDLKGILFHDCGHI 81 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~-gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNE-tf~F~v~~~~l~d~~~~ 81 (318)
++|.|+|+.|++|+-.|.. ...|.||.|++.. ..+||.|-.+ .+||.||. =|.|.+.+..|+| .
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n----------~t~ktdvf~k-slnp~wnsdwfkfevddadlqd---e 68 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN----------TTFKTDVFLK-SLNPQWNSDWFKFEVDDADLQD---E 68 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecc----------cceehhhhhh-hcCCcccccceEEecChhhhcc---C
Confidence 6789999999999988764 4689999999964 4899999877 49999995 4999999988875 4
Q ss_pred EEEEEEeecCcCCCCcEEEEEEEeCccccccc-------CceeEEEEEEEeCCCCCcceEEEEEEEEee
Q 036009 82 FVHFELKHEGVMFGDKTIGEVRVPIKDLISEF-------NGVVRFVDYEVRNPDGKPNGVLTFSYKVNG 143 (318)
Q Consensus 82 ~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~-------~g~~~~~sy~Lr~~sGk~~G~L~ls~kf~~ 143 (318)
-|.+.+.|+|.+..++.||.+.|.+.-|.-+. .|.....|+++.+.-...+|+|++-+++.-
T Consensus 69 plqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkvdl 137 (1169)
T KOG1031|consen 69 PLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKVDL 137 (1169)
T ss_pred CeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEEee
Confidence 68999999999999999999999998766432 134557899998865456899998888653
No 116
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.66 E-value=6e-09 Score=108.34 Aligned_cols=134 Identities=17% Similarity=0.285 Sum_probs=96.6
Q ss_pred EEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcch------hc---------------CCceEEcccccCCCCCCeEee
Q 036009 6 LEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKT------LE---------------QKQKHRTPTDKEGDGNPEWNH 64 (318)
Q Consensus 6 L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~------~~---------------~~~k~KTkv~k~~g~NPvWNE 64 (318)
|.|.++.|+||..++..|.+|||+.+.+.....+.+ ++ .+-.+-|.|.+ .++||+|||
T Consensus 116 l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~-~TLnPkW~E 194 (1103)
T KOG1328|consen 116 LNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKK-KTLNPKWSE 194 (1103)
T ss_pred HHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccc-ccCCcchhh
Confidence 456678899999999999999999998764211100 00 01123455554 479999999
Q ss_pred EEEEEccCcccCCCcceEEEEEEeecCcC---------------------------------C---CCcEEEEEEEeCcc
Q 036009 65 GMQFDLKGILFHDCGHIFVHFELKHEGVM---------------------------------F---GDKTIGEVRVPIKD 108 (318)
Q Consensus 65 tf~F~v~~~~l~d~~~~~L~feV~d~d~~---------------------------------~---~Dd~IG~a~VpLsd 108 (318)
+|.|.|.+.. ...+.+.|||+|.- + .|||||.+.|||.+
T Consensus 195 kF~F~IeDv~-----tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~E 269 (1103)
T KOG1328|consen 195 KFQFTIEDVQ-----TDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAE 269 (1103)
T ss_pred heeeehhccc-----cceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhc
Confidence 9999998753 34689999997511 1 27899999999999
Q ss_pred cccccCceeEEEEEEEeCCCCCcceEEEEEEEEeecCCC
Q 036009 109 LISEFNGVVRFVDYEVRNPDGKPNGVLTFSYKVNGMNSA 147 (318)
Q Consensus 109 Ll~~~~g~~~~~sy~Lr~~sGk~~G~L~ls~kf~~~~~~ 147 (318)
+...+ ..++..++.|+...++.|.++|.+++......
T Consensus 270 iP~~G--ld~WFkLepRS~~S~VqG~~~LklwLsT~e~~ 306 (1103)
T KOG1328|consen 270 IPPDG--LDQWFKLEPRSDKSKVQGQVKLKLWLSTKEEG 306 (1103)
T ss_pred CCcch--HHHHhccCcccccccccceEEEEEEEeeeccc
Confidence 87543 34555566677778899999999999876443
No 117
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.55 E-value=2.5e-08 Score=103.83 Aligned_cols=103 Identities=14% Similarity=0.225 Sum_probs=83.6
Q ss_pred ceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEE
Q 036009 4 SSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFV 83 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L 83 (318)
.+|-|.|+-|+|+..-|.+|-+||||+|.|... ... -....+||+|++. ++||+|+|+|.|.|...... .....|
T Consensus 947 q~L~veVlhA~diipLD~NGlSDPFVviEl~P~-~~f--p~v~~q~T~V~~r-tLnPVfDE~FeFsVp~e~c~-te~Am~ 1021 (1103)
T KOG1328|consen 947 QTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPK-FRF--PAVPVQKTKVVSR-TLNPVFDETFEFSVPPEPCS-TETAML 1021 (1103)
T ss_pred cchhhhhhccccccccCCCCCCCCeEEEEeccc-ccc--ccchhhhhhhhhc-cccchhhhheeeecCccccc-cccceE
Confidence 467888999999999999999999999999752 000 0135789999977 69999999999999875321 125689
Q ss_pred EEEEeecCcCCCCcEEEEEEEeCccccc
Q 036009 84 HFELKHEGVMFGDKTIGEVRVPIKDLIS 111 (318)
Q Consensus 84 ~feV~d~d~~~~Dd~IG~a~VpLsdLl~ 111 (318)
.|+|+|+|-+..|||-|++.+-|+++..
T Consensus 1022 ~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1022 HFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred EEEeeccceecccccchHHHHhhCCCCC
Confidence 9999999988899999999999988754
No 118
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=4.5e-06 Score=86.64 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=87.5
Q ss_pred ceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEE
Q 036009 4 SSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFV 83 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L 83 (318)
..+.|+|+.|.||+... .|...|||.|.|.|..-.. +++++.|++. +|+..|.+||+|+|-+.+.. ......|
T Consensus 1125 hkvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsD---KKRK~~TKtK-snnWaPKyNEtF~f~Lg~e~--~Pe~YEL 1197 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSD---KKRKFSTKTK-SNNWAPKYNETFHFFLGNEG--GPEHYEL 1197 (1283)
T ss_pred ceEEEEEEecccccchh-ccccccceEEEEecCcccc---hhhhcccccc-CCCcCcccCceeEEEeccCC--CCceEEE
Confidence 46889999999999865 6788999999998743221 4678888886 45689999999999998753 2346789
Q ss_pred EEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeC
Q 036009 84 HFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRN 126 (318)
Q Consensus 84 ~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~ 126 (318)
.|.|+|.---..|+.+|.+.+.|.++...+. -..|++|.+
T Consensus 1198 ~~~VKDYCFAReDRvvGl~VlqL~~va~kGS---~a~W~pLgr 1237 (1283)
T KOG1011|consen 1198 QFCVKDYCFAREDRVVGLAVLQLRSVADKGS---CACWVPLGR 1237 (1283)
T ss_pred EEeehhheeecccceeeeeeeehhhHhhcCc---eeEeeeccc
Confidence 9999886533457899999999999987643 346888754
No 119
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.25 E-value=7.5e-07 Score=96.81 Aligned_cols=112 Identities=21% Similarity=0.292 Sum_probs=86.7
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEE-ccCcccCCCcce
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFD-LKGILFHDCGHI 81 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~-v~~~~l~d~~~~ 81 (318)
.++|.|-|.-|++|.--.-....||||+.++..+ +.+ ..|.||+|+++ +.||.|||.+..+ +.-..++ .+
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPd-p~k----~sKRKTKvvrk-t~~PTfnE~LvY~g~p~~~l~---qR 1593 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPD-PRK----TSKRKTKVVRK-TRNPTFNEMLVYDGFPKEILQ---QR 1593 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCC-chH----hhhhhhccccc-cCCCchhhheeecCCchhhhh---hh
Confidence 5789999999999954443567999999999875 432 46899999987 5899999999887 3332222 35
Q ss_pred EEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeC
Q 036009 82 FVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRN 126 (318)
Q Consensus 82 ~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~ 126 (318)
.|.+.|+..+.+..+.|||.+.|+|.++.-.. +...||+|-.
T Consensus 1594 eLQ~sVls~~~~~en~~lg~v~i~L~~~~l~k---E~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1594 ELQVSVLSNGGLLENVFLGGVNIPLLKVDLLK---ESVGWYNLGA 1635 (1639)
T ss_pred eeeeeeecccceeeeeeeeeeecchhhcchhh---hhcceeeccc
Confidence 79999999998888999999999998765432 2357888743
No 120
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.25 E-value=1.8e-06 Score=90.01 Aligned_cols=123 Identities=16% Similarity=0.230 Sum_probs=83.3
Q ss_pred EEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCccc----------CCCc
Q 036009 10 VMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILF----------HDCG 79 (318)
Q Consensus 10 VisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l----------~d~~ 79 (318)
+++++++-... .+.+||||+|...+... ....+|++.++ +.||.|||.|.|.+..... .|..
T Consensus 137 ~L~~r~~~P~~-~~~~dp~~~v~~~g~~~------~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~ 208 (800)
T KOG2059|consen 137 VLKTRQGLPII-NGQCDPFARVTLCGPSK------LKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPEEEDD 208 (800)
T ss_pred hhhhcccCcee-CCCCCcceEEeecccch------hhccccceeee-ccCcchhhheeeeeccccccccchhcCcccCCc
Confidence 34444444433 45699999999886422 33478999887 5899999999999865410 1112
Q ss_pred ceEEEEEEee-cCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCC-CC------CcceEEEEEEEEee
Q 036009 80 HIFVHFELKH-EGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNP-DG------KPNGVLTFSYKVNG 143 (318)
Q Consensus 80 ~~~L~feV~d-~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~-sG------k~~G~L~ls~kf~~ 143 (318)
...|++++|+ .+.+.+|+|+|+++|++..+....+ ...||.|.-. +| ...|.|.+.+.+..
T Consensus 209 ~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~---p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 209 MLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSS---PAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred eeeEEEeeccchhhhhhhhhceeEEeehhhhhhccC---ccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 4678999998 5556669999999999998874432 2467766542 22 23566777777664
No 121
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=3e-07 Score=88.78 Aligned_cols=134 Identities=18% Similarity=0.202 Sum_probs=94.9
Q ss_pred CCceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcce
Q 036009 2 ESSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHI 81 (318)
Q Consensus 2 ~~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~ 81 (318)
+++.++.||..|++|+..++.+..|+|++..+..... +..+.+|++..+ ++||.|||+......... +....
T Consensus 91 ~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~-----kl~slr~~t~~n-~lN~~w~etev~~~i~~~--~~~~K 162 (362)
T KOG1013|consen 91 ESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAG-----KLNSLRTKTTRN-TLNPEWNETEVYEGITDD--DTHLK 162 (362)
T ss_pred hhhhcceeechhcccchhhhhhhcchHHhhhcccchh-----hhhhhhHHhhcc-CcCcceeccceecccccc--hhhhh
Confidence 4678999999999999999999999999999985321 245788998855 699999998766543321 23356
Q ss_pred EEEEEEeecCcCCCCcEEEEEEEeCcccccccCcee-EEEEEEEe--CC---CCCcceEEEEEEEEee
Q 036009 82 FVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVV-RFVDYEVR--NP---DGKPNGVLTFSYKVNG 143 (318)
Q Consensus 82 ~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~-~~~sy~Lr--~~---sGk~~G~L~ls~kf~~ 143 (318)
.+++.|+|++.+.++.++|+.+|.+..|........ ..+...|- +. +-+.+|.|.+++.+..
T Consensus 163 ~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s 230 (362)
T KOG1013|consen 163 VLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSS 230 (362)
T ss_pred hhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCc
Confidence 788999999999999999999999887765432100 11122222 11 1245777777776654
No 122
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=98.09 E-value=1.4e-06 Score=86.39 Aligned_cols=148 Identities=16% Similarity=0.214 Sum_probs=101.8
Q ss_pred ceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcc-----cCC-
Q 036009 4 SSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGIL-----FHD- 77 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~-----l~d- 77 (318)
..|+++|+++.++.-..--.-.|-||.+++.-.+ + ..++.||.|+++ +.+|.|+|.|.+.+.... ++.
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~n-D----~~qk~kt~vik~-t~SPdfde~fklni~rg~~~nr~fqR~ 440 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLEN-D----SRQKLKTDVIKV-TPSPDFDEDFKLNIRRGPGLNREFQRR 440 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccc-c----ccccCccceeeC-CCCCCcccceeeeccCCCcccHHHHHH
Confidence 4578888888888654422346788888765321 0 146889999976 579999999999987621 100
Q ss_pred CcceEEEEEEeecCcCCC-CcEEEEEEEeCcccccccCceeEEEEEEEeCCCCCcceEEEEEEEEeecCCCCCCCCCCCc
Q 036009 78 CGHIFVHFELKHEGVMFG-DKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKPNGVLTFSYKVNGMNSAIGTDYPGTT 156 (318)
Q Consensus 78 ~~~~~L~feV~d~d~~~~-Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~~G~L~ls~kf~~~~~~~~~~~~~~~ 156 (318)
..+..+.|||++++.|.+ |+|+|.+.|.|.-|... ++....|.|.+...-+.|.|.+.+++..+-.+....
T Consensus 441 fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~---cei~e~~~l~DGRK~vGGkLevKvRiR~Pi~~~~~q----- 512 (523)
T KOG3837|consen 441 FKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENM---CEICEYLPLKDGRKAVGGKLEVKVRIRQPIGDAKAQ----- 512 (523)
T ss_pred HHhcCeeEEEeeccccccccceeceeeeeehhhhcc---cchhhceeccccccccCCeeEEEEEEecccchhHHH-----
Confidence 013468999999987765 88999999999766543 234567888873323578999999998775554311
Q ss_pred cee-eeeecc
Q 036009 157 QIT-GFSIVN 165 (318)
Q Consensus 157 ~~~-g~~v~~ 165 (318)
-|+ .|.|+|
T Consensus 513 hitekWLvLd 522 (523)
T KOG3837|consen 513 HITEKWLVLD 522 (523)
T ss_pred HHHhhheecc
Confidence 222 388875
No 123
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=8.7e-06 Score=78.88 Aligned_cols=94 Identities=17% Similarity=0.142 Sum_probs=77.3
Q ss_pred ceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEE
Q 036009 4 SSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFV 83 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L 83 (318)
..|.|+|+.|..|...|..+-+||||.+++..+.. +..++||.+.|+ +.||+||+.|.|.+....|. ...+
T Consensus 233 ~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~-----~~fkkKt~~~K~-t~~p~fd~~~~~~i~pgdLa---~~kv 303 (362)
T KOG1013|consen 233 PGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVG-----KKFKKKTQQKKK-TLNPEFDEEFFYDIGPGDLA---YKKV 303 (362)
T ss_pred CceEEEEEEeeeeeccccCCCCCccceeecCCCcc-----hhhcccCcchhc-cCCccccccccccCCccchh---cceE
Confidence 45889999999999999899999999999974322 256889999876 68999999999999987653 4578
Q ss_pred EEEEeecCcCCCCcEEEEEEEeC
Q 036009 84 HFELKHEGVMFGDKTIGEVRVPI 106 (318)
Q Consensus 84 ~feV~d~d~~~~Dd~IG~a~VpL 106 (318)
.|.|+|.+...+++++|-+..-+
T Consensus 304 ~lsvgd~~~G~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 304 ALSVGDYDIGKSNDSIGGSMLGG 326 (362)
T ss_pred EEeecccCCCcCccCCCcccccc
Confidence 89999988766889998754443
No 124
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.91 E-value=5.2e-05 Score=81.06 Aligned_cols=109 Identities=23% Similarity=0.364 Sum_probs=80.7
Q ss_pred ceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeE-EEEEccCcccCCCcceE
Q 036009 4 SSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHG-MQFDLKGILFHDCGHIF 82 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEt-f~F~v~~~~l~d~~~~~ 82 (318)
.+|.|+|||+.-|.++. ..-||.|.+.+- |...+ ...+||+++.+|+.||+|||. |.|.-.- |.+ ..+
T Consensus 703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgL-P~Dt~--Rk~~rtrt~~~n~~npvy~eepfvF~KVv--Lpe--LA~ 771 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGL-PTDTI--RKEFRTRTVQGNSFNPVYEEEPFVFRKVV--LPE--LAS 771 (1189)
T ss_pred eeEEEEEEeeeeccccc----cCceEEEEecCC-Cchhh--hhhhhhccccCCCCCcccccCCcccceec--ccc--hhh
Confidence 57899999999998765 458999999874 33221 357899999999999999974 7776321 222 468
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCCcce
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKPNG 133 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~~G 133 (318)
|+|.|++++ .+|||.-.+||..|..+. + ..-||+..+.+-+
T Consensus 772 lRiavyeEg----gK~ig~RIlpvd~l~~GY----r--hv~LRse~Nqpl~ 812 (1189)
T KOG1265|consen 772 LRIAVYEEG----GKFIGQRILPVDGLNAGY----R--HVCLRSESNQPLT 812 (1189)
T ss_pred eeeeeeccC----CceeeeeccchhcccCcc----e--eEEecCCCCCccc
Confidence 999999974 689999999998877654 2 3466676666543
No 125
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.67 E-value=7.8e-05 Score=60.26 Aligned_cols=93 Identities=18% Similarity=0.268 Sum_probs=68.2
Q ss_pred EEEEEEeecCCCCCCC-CccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEE
Q 036009 7 EIKVMFGKDLKAFNFF-QKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHF 85 (318)
Q Consensus 7 ~VtVisA~dL~~~d~~-gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~f 85 (318)
=|||+.|+||....-- ....-|++=-|.-. |....||.+.+ +..||+|+|+|.|.+.-..++ ...|.|
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~-------kpv~~KsS~rr-gs~d~~f~ETFVFqi~l~qL~---~V~L~f 70 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLP-------KPVHFKSSAKE-GSNDIEFMETFVFAIKLQNLQ---TVRLVF 70 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecC-------CCccccchhhc-CCCChhHHHHHHHHHHHhhcc---ceEEEE
Confidence 4899999999865432 24556665544321 23567888765 458999999999999876554 467889
Q ss_pred EEeecCcCCCCcEEEEEEEeCcccccc
Q 036009 86 ELKHEGVMFGDKTIGEVRVPIKDLISE 112 (318)
Q Consensus 86 eV~d~d~~~~Dd~IG~a~VpLsdLl~~ 112 (318)
.|+. .+.+.+.||+|.+.+.++-.+
T Consensus 71 sv~~--~~~RKe~iG~~sL~l~s~gee 95 (103)
T cd08684 71 KIQT--QTPRKRTIGECSLSLRTLSTQ 95 (103)
T ss_pred Eeec--cCCccceeeEEEeecccCCHH
Confidence 9988 467889999999999887654
No 126
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.60 E-value=0.00013 Score=62.70 Aligned_cols=109 Identities=23% Similarity=0.346 Sum_probs=74.4
Q ss_pred EEEEEEEeecCCCC---------CC----CCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEcc-
Q 036009 6 LEIKVMFGKDLKAF---------NF----FQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLK- 71 (318)
Q Consensus 6 L~VtVisA~dL~~~---------d~----~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~- 71 (318)
|.|.|+.|.+|+.. ++ .-..+.||+|.+.--+ +..+.+|+++.+ +-.|+||..+.|.++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~------~~e~r~TrtVAr-SFcPeF~Hh~Efpc~l 73 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLP------EKELRRTRTVAR-SFCPEFNHHVEFPCNL 73 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCC------CCceeeccchhh-hcCCCccceEEEeccc
Confidence 46788888888631 11 0136899999976421 246889998866 589999999999986
Q ss_pred -------Cc-ccCC-CcceEEEEEEeecCc----------CCCCcEEEEEEEeCcccccccCceeEEEEEE
Q 036009 72 -------GI-LFHD-CGHIFVHFELKHEGV----------MFGDKTIGEVRVPIKDLISEFNGVVRFVDYE 123 (318)
Q Consensus 72 -------~~-~l~d-~~~~~L~feV~d~d~----------~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~ 123 (318)
+. +|.+ .....|.|+||+++. ..+|-+||.++||+.+|+..-.|- ..||+
T Consensus 74 v~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGi--tGW~p 142 (143)
T cd08683 74 VVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGI--TGWYP 142 (143)
T ss_pred EEEcCCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCc--ccccc
Confidence 10 1111 124578999998642 234669999999999999876553 34554
No 127
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.59 E-value=3.5e-05 Score=83.14 Aligned_cols=90 Identities=13% Similarity=0.111 Sum_probs=73.3
Q ss_pred eEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEE
Q 036009 5 SLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVH 84 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~ 84 (318)
.++|.|+.|-+|...|..|..||||+|.+.+. ...-++..+. +++||+|++.|.+...-.- ...|.
T Consensus 614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~--------~~~d~~~yip-~tlnPVfgkmfel~~~lp~-----ek~l~ 679 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKK--------RTLDRAHYIP-NTLNPVFGKMFELECLLPF-----EKDLI 679 (1105)
T ss_pred eEEEEEEEeeeccccCCCCCcCceeeeeeccc--------hhhhhhhcCc-CCCCcHHHHHHHhhcccch-----hhcce
Confidence 47899999999999999999999999999742 1234555664 4799999999887765431 34689
Q ss_pred EEEeecCcCCCCcEEEEEEEeCcc
Q 036009 85 FELKHEGVMFGDKTIGEVRVPIKD 108 (318)
Q Consensus 85 feV~d~d~~~~Dd~IG~a~VpLsd 108 (318)
++|||+|.+.+|+.||+.++.|..
T Consensus 680 v~vyd~D~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 680 VEVYDHDLEAQDEKIGETTIDLEN 703 (1105)
T ss_pred eEEEEeecccccchhhceehhhhh
Confidence 999999999999999999999864
No 128
>PLN02964 phosphatidylserine decarboxylase
Probab=97.46 E-value=0.00017 Score=76.06 Aligned_cols=104 Identities=13% Similarity=0.218 Sum_probs=73.8
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
.+.+.|||++|+ .++ .|+|..+-..| .+.+||.+.++ +.||+||+...|.|.... ...
T Consensus 53 ~~~~~~~~~~~~----~~~---~~~~~~~~~~g---------~~~f~t~~~~~-~~~p~~~~~~~~~~~~~~-----~~~ 110 (644)
T PLN02964 53 SGIALLTLVGAE----MKF---KDKWLACVSFG---------EQTFRTETSDS-TDKPVWNSEKKLLLEKNG-----PHL 110 (644)
T ss_pred cCeEEEEeehhh----hcc---CCcEEEEEEec---------ceeeeeccccc-cCCcccchhhceEeccCC-----cce
Confidence 467889999988 221 35554444334 37899999866 699999998888887642 234
Q ss_pred EEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCC
Q 036009 83 VHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDG 129 (318)
Q Consensus 83 L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sG 129 (318)
.+|.|||.+++..|+++|.|.+.|.++....-.+ -...|.+.++++
T Consensus 111 ~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~e-lkeaF~lfD~dg 156 (644)
T PLN02964 111 ARISVFETNRLSKNTLVGYCELDLFDFVTQEPES-ACESFDLLDPSS 156 (644)
T ss_pred EEEEEEecCCCCHHHhhhheeecHhhccHHHHHH-HHHHHHHHCCCC
Confidence 6999999999999999999999998887653211 122355555543
No 129
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=97.30 E-value=0.017 Score=48.69 Aligned_cols=128 Identities=15% Similarity=0.169 Sum_probs=79.7
Q ss_pred eEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCc------ccCCC
Q 036009 5 SLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGI------LFHDC 78 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~------~l~d~ 78 (318)
.+.|+|....++... ....||+...... . ....+|......+..-.|||.|.+.+.-. .++
T Consensus 8 ~~~l~i~~l~~~p~~----~~~v~v~wkr~~~-~------~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~-- 74 (143)
T PF10358_consen 8 QFDLTIHELENLPSS----NGKVFVKWKRGDK-S------KGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQ-- 74 (143)
T ss_pred EEEEEEEEeECcCCC----CCEEEEEEEECCC-C------ccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEe--
Confidence 467888888888762 2344444443221 0 11345554444446899999988775321 122
Q ss_pred cceEEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCCcceEEEEEEEEeecCCCC
Q 036009 79 GHIFVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKPNGVLTFSYKVNGMNSAI 148 (318)
Q Consensus 79 ~~~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~~G~L~ls~kf~~~~~~~ 148 (318)
...|.|.|+....-.....||.+.|.|+++..... ......+.|... .+.+..|+|++.+..-..+.
T Consensus 75 -~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~-~~~~~~~~l~~~-~~~~a~L~isi~~~~~~~~~ 141 (143)
T PF10358_consen 75 -PKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDE-EPITVRLLLKKC-KKSNATLSISISLSELREDP 141 (143)
T ss_pred -eEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCC-CcEEEEEeCccC-CCCCcEEEEEEEEEECccCC
Confidence 35688888876322223599999999999998531 234566777654 24577899999888755443
No 130
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.64 E-value=0.0035 Score=64.59 Aligned_cols=94 Identities=22% Similarity=0.301 Sum_probs=67.5
Q ss_pred EEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEEEEeec
Q 036009 11 MFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHE 90 (318)
Q Consensus 11 isA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~feV~d~ 90 (318)
+.|+.|.++++++++|+|..+.=..++.. .....+|.++++ ++||.|.+ |.+.+..-...| ....+.++++|.
T Consensus 143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s----~~~~~~tEv~~n-~l~p~w~~-~~i~~~~l~~~~-~~~~~~i~~~d~ 215 (529)
T KOG1327|consen 143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGS----TQMLYRTEVVKN-TLNPQWAP-FSISLQSLCSKD-GNRPIQIECYDY 215 (529)
T ss_pred eeeeecCcccccccCCcceEEEEecCCCc----eeeccccceecc-CCCCcccc-cccchhhhcccC-CCCceEEEEecc
Confidence 45788888999999999998875422221 134689999876 59999987 333332211112 145688999999
Q ss_pred CcCCCCcEEEEEEEeCccccc
Q 036009 91 GVMFGDKTIGEVRVPIKDLIS 111 (318)
Q Consensus 91 d~~~~Dd~IG~a~VpLsdLl~ 111 (318)
+....+++||++...+.++..
T Consensus 216 ~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 216 DSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred CCCCCcCceeEecccHHHhcc
Confidence 877777999999999998864
No 131
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.61 E-value=0.021 Score=50.37 Aligned_cols=95 Identities=17% Similarity=0.174 Sum_probs=61.4
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceE
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIF 82 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~ 82 (318)
.+.++|+|++++++.-.+ ..|.||.+.|..+... + ..-..|+.+. ..++.|||-+.|.|.-..|- ....
T Consensus 7 ~~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~--L--~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLP--r~Ar 75 (158)
T cd08398 7 NSNLRIKILCATYVNVND---IDKIYVRTGIYHGGEP--L--CDNVNTQRVP--CSNPRWNEWLDYDIYIPDLP--RSAR 75 (158)
T ss_pred CCCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEE--c--cCeeEecccC--CCCCccceeEEcccchhcCC--hhhe
Confidence 357899999999987543 4689999988753210 0 1233454433 25899999998887544332 3568
Q ss_pred EEEEEeecCcCCC----CcEEEEEEEeCcc
Q 036009 83 VHFELKHEGVMFG----DKTIGEVRVPIKD 108 (318)
Q Consensus 83 L~feV~d~d~~~~----Dd~IG~a~VpLsd 108 (318)
|.|.||+.....+ ...||.+.++|=+
T Consensus 76 L~iti~~~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 76 LCLSICSVKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred EEEEEEEEecccCCCCceEEEEEEEEEEEC
Confidence 9999998542111 1357877777654
No 132
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=96.61 E-value=0.019 Score=51.18 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=53.2
Q ss_pred ceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEE
Q 036009 4 SSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFV 83 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L 83 (318)
+.++|+|+++.+|... ....+.||.+.|..+.. .+ .....|+.+.- ..++.|||.+.|.+.-..|- ....|
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~--~L--~~p~~T~~~~~-~~~~~Wnewl~F~I~i~dLP--r~ArL 78 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGE--SL--CKTVKTSEVSG-KNDPVWNETLEFDINVCDLP--RMARL 78 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCE--Ec--cCceEccccCC-CCccccceeEEcccchhcCC--hhHeE
Confidence 5689999999999862 24578899998874211 01 22445655432 35799999999987554342 35678
Q ss_pred EEEEeecC
Q 036009 84 HFELKHEG 91 (318)
Q Consensus 84 ~feV~d~d 91 (318)
.|.||+..
T Consensus 79 citi~~~~ 86 (173)
T cd08693 79 CFAIYEVS 86 (173)
T ss_pred EEEEEEec
Confidence 89999754
No 133
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.48 E-value=0.00059 Score=73.96 Aligned_cols=106 Identities=14% Similarity=0.021 Sum_probs=74.6
Q ss_pred EEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcc----cCCCcce
Q 036009 6 LEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGIL----FHDCGHI 81 (318)
Q Consensus 6 L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~----l~d~~~~ 81 (318)
+++.|-+|+.|...+..+.+|+|+.|...+ +.++|.++.+ ++||.||.++.|.-.+-. +-+.+-.
T Consensus 208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~----------qs~~T~~v~~-tl~ptwdq~~~f~~~ei~ge~~~~~~~pp 276 (1105)
T KOG1326|consen 208 LRSYIYQARALGAPDKDDESDPDAAVEFCG----------QSKETEVVPG-TLNPTWDQTIIFDEVEIYGEAHLVLKNPP 276 (1105)
T ss_pred hHHHHHHHHhhcCCCcccCCCchhhhhccc----------ccceeEeecC-cCCCCccceeeccceeecCccchhhcCCC
Confidence 344556678887777777899999999864 5788999865 799999999988742210 1111234
Q ss_pred EEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeC
Q 036009 82 FVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRN 126 (318)
Q Consensus 82 ~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~ 126 (318)
.+.|||+|.++.+.|+|+|.......-...- -..+|+++.+
T Consensus 277 i~v~e~yd~dr~g~~ef~gr~~~~p~V~~~~----p~lkw~p~~r 317 (1105)
T KOG1326|consen 277 IRVFEVYDLDRSGINEFKGRKKQRPYVMVQC----PALKWVPTMR 317 (1105)
T ss_pred eEEEEeehhhhhchHHhhcccccceEEEecC----CccceEEeec
Confidence 6789999999999999999876655443331 1356777665
No 134
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.25 E-value=0.035 Score=48.01 Aligned_cols=97 Identities=20% Similarity=0.201 Sum_probs=63.3
Q ss_pred ceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEE
Q 036009 4 SSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFV 83 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L 83 (318)
..++|+|....++...+ ....+.||.++|..+... + .....|+.... ..++.|||.+.|.+.-..|- ....|
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~--l--~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP--~~arL 79 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEP--L--CPPQSTKKVPF-STSVTWNEWLTFDILISDLP--REARL 79 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEE--c--cCceeccCCcC-CCCCcccceeEccchhhcCC--hhheE
Confidence 46788888888776411 345789999988743110 0 12344544432 25899999999987554442 35679
Q ss_pred EEEEeecCcCC--CCcEEEEEEEeCcc
Q 036009 84 HFELKHEGVMF--GDKTIGEVRVPIKD 108 (318)
Q Consensus 84 ~feV~d~d~~~--~Dd~IG~a~VpLsd 108 (318)
.|.||+..... .+..||++.++|=+
T Consensus 80 ~itl~~~~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 80 CLSIYAVSEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred EEEEEEEecCCCCcceEEEEEeEEeEc
Confidence 99999865332 35689999888765
No 135
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=96.11 E-value=0.034 Score=49.23 Aligned_cols=100 Identities=15% Similarity=0.085 Sum_probs=63.0
Q ss_pred CceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEccccc---CCCCCCeEeeEEEEEccCcccCCCc
Q 036009 3 SSSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDK---EGDGNPEWNHGMQFDLKGILFHDCG 79 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k---~~g~NPvWNEtf~F~v~~~~l~d~~ 79 (318)
...+.|+|.++.++...-.....|.||.+.|..+.. .+ .....|+... .-.....|||.+.|.+.-..| ..
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~--~L--~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~L--Pr 80 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGR--LL--CSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQL--PR 80 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCE--EC--cCceeccccccccCccccccccceEECccchhcC--Ch
Confidence 346889999999998654334588999998875311 01 1233454321 111357799999888754433 23
Q ss_pred ceEEEEEEeecCcCC---------CCcEEEEEEEeCcc
Q 036009 80 HIFVHFELKHEGVMF---------GDKTIGEVRVPIKD 108 (318)
Q Consensus 80 ~~~L~feV~d~d~~~---------~Dd~IG~a~VpLsd 108 (318)
...|.|.||+..... .+..||++.++|=+
T Consensus 81 earL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 81 ESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred hHEEEEEEEEEecCCccccccccccceEEEEEeEeeEc
Confidence 568999999855322 23577777777654
No 136
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.03 E-value=0.0052 Score=60.87 Aligned_cols=112 Identities=14% Similarity=0.151 Sum_probs=78.7
Q ss_pred CceEEEEEEEeecCCCCCC-CCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcce
Q 036009 3 SSSLEIKVMFGKDLKAFNF-FQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHI 81 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~-~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~ 81 (318)
.+.|+|.|+.|++|..+-. ....++||+|++...... ..+.||+..++ +.+|.+-..+.|.-... ..
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c-----~ak~ktk~A~k-T~~plyqq~l~f~~sp~------~k 335 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFC-----IAKKKTKSARK-TLDPLYQQQLSFDQSPP------GK 335 (405)
T ss_pred cCceeEEEEecccccccCCcccccCceeEEEEcCCCce-----ecccccccccc-cCchhhhhhhhhccCCC------cc
Confidence 4679999999999976542 236899999999864221 35788988876 45665556666665442 45
Q ss_pred EEEEEEe-ecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCC
Q 036009 82 FVHFELK-HEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPD 128 (318)
Q Consensus 82 ~L~feV~-d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~s 128 (318)
.|.+.|| |..++-.+.|+|.+.|-+.+|--.. ..--.||.|...+
T Consensus 336 ~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~--~~~igwyKlfgss 381 (405)
T KOG2060|consen 336 YLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSS--SPVIGWYKLFGSS 381 (405)
T ss_pred EEEEEEeccccccchHHHhhHHHHHhhhhcccc--ccceeeeeccCCc
Confidence 7888888 4566666779999999998876543 1235688876543
No 137
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=95.98 E-value=0.058 Score=44.70 Aligned_cols=94 Identities=13% Similarity=0.101 Sum_probs=52.4
Q ss_pred ceEEcccccCCCCCCeEeeEEEEEccCcccC--CCcceEEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEE
Q 036009 46 QKHRTPTDKEGDGNPEWNHGMQFDLKGILFH--DCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYE 123 (318)
Q Consensus 46 ~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~--d~~~~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~ 123 (318)
..+.|.++. |.||.+|-+.+|.|....+. -.....|+||+...-. ..-++||.++|++..+++... .....+..
T Consensus 11 Etq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~-~~i~~~~~ 86 (107)
T PF11618_consen 11 ETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNG-ERIHGSAT 86 (107)
T ss_dssp --EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S---EEEEEE
T ss_pred eeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCC-ceEEEEEE
Confidence 578999986 57999999988887654320 0113578999987541 234699999999999996543 22456678
Q ss_pred EeCCCCCcceEEEEEEEEee
Q 036009 124 VRNPDGKPNGVLTFSYKVNG 143 (318)
Q Consensus 124 Lr~~sGk~~G~L~ls~kf~~ 143 (318)
|.+.+|+.-|.|.+.+++..
T Consensus 87 l~g~~~~~~g~l~y~~rl~~ 106 (107)
T PF11618_consen 87 LVGVSGEDFGTLEYWIRLRV 106 (107)
T ss_dssp E-BSSS-TSEEEEEEEEEEE
T ss_pred EeccCCCeEEEEEEEEEecC
Confidence 88888888999999988764
No 138
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=95.91 E-value=0.11 Score=46.82 Aligned_cols=132 Identities=13% Similarity=0.083 Sum_probs=72.5
Q ss_pred ceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEE
Q 036009 4 SSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFV 83 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L 83 (318)
+.++|+|+++..+. .+.......||.+.|..+.. .....+|....- +.++.|||-+.|.|.-..|- ....|
T Consensus 10 ~~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~-----~l~~~~T~~~~~-~~~~~WnEwL~f~I~~~dLP--~~arL 80 (178)
T cd08399 10 RKFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQ-----VLCQRRTSPKPF-TEEVLWNTWLEFDIKIKDLP--KGALL 80 (178)
T ss_pred CCEEEEEEeecccC-cCCCCceEEEEEEEEEECCe-----ecccceeeccCC-CCCccccccEECccccccCC--hhhEE
Confidence 46889988887443 32234466888887774211 012335554433 46799999988887655442 35678
Q ss_pred EEEEeecCcCCC-CcEEEEEEEeCcccccccCceeEEEEEEEeCCCCC-cceEEEEEEEEeecCCC
Q 036009 84 HFELKHEGVMFG-DKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGK-PNGVLTFSYKVNGMNSA 147 (318)
Q Consensus 84 ~feV~d~d~~~~-Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk-~~G~L~ls~kf~~~~~~ 147 (318)
.|.||+.....+ .+..|.. +.+.... ..-..-+....|-+.+|. .+|...|.++..+.+.+
T Consensus 81 c~ti~~~~~~~~~~~~~~~~--~~~~~~~-~~~~l~wvn~~LFD~~~~Lr~G~~~L~~W~~~~~~~ 143 (178)
T cd08399 81 NLQIYCGKAPALSSKKSAES--PSSESKG-KHQLLYYVNLLLIDHRFLLRTGEYVLHMWQISGKGE 143 (178)
T ss_pred EEEEEEEecCcccccccccc--ccccccc-ccceEEEEEEEEEcCCCceecCCEEEEEecCCCccc
Confidence 999998532111 1122211 1111000 001123455566666555 47888888887654433
No 139
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=95.30 E-value=0.087 Score=56.67 Aligned_cols=15 Identities=13% Similarity=0.521 Sum_probs=7.8
Q ss_pred CCCCeEeeEEEEEcc
Q 036009 57 DGNPEWNHGMQFDLK 71 (318)
Q Consensus 57 g~NPvWNEtf~F~v~ 71 (318)
+.+|.|.-.|+|+|.
T Consensus 441 ~~DPdf~yr~~l~id 455 (1102)
T KOG1924|consen 441 GMDPDFKYRFRLDID 455 (1102)
T ss_pred CCCCCcchhhcccCc
Confidence 455555555555543
No 140
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.12 E-value=0.25 Score=48.76 Aligned_cols=127 Identities=9% Similarity=0.118 Sum_probs=90.4
Q ss_pred EEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCC--CcceEE
Q 036009 6 LEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHD--CGHIFV 83 (318)
Q Consensus 6 L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d--~~~~~L 83 (318)
|.|.|+.|++..... +..-.+..++++ ....|..+.. +..|.||..+...++...+.. ..+.-|
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng----------~~l~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPi 67 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNG----------ESLETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPI 67 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCC----------ceeeecCCCC-CCCceeecceeeeccHHHHHHhhccCCce
Confidence 568899999887652 467778888875 4677776543 579999999988886654422 224578
Q ss_pred EEEEeecC-cCCCCcEEEEEEEeCccc---ccccCceeEEEEEEEeCCCCCc---ceEEEEEEEEeecCCC
Q 036009 84 HFELKHEG-VMFGDKTIGEVRVPIKDL---ISEFNGVVRFVDYEVRNPDGKP---NGVLTFSYKVNGMNSA 147 (318)
Q Consensus 84 ~feV~d~d-~~~~Dd~IG~a~VpLsdL---l~~~~g~~~~~sy~Lr~~sGk~---~G~L~ls~kf~~~~~~ 147 (318)
++++|..+ .....+.||-+.++|..+ ..+. ...+..||+|.+.+++. +=+|.|++.+......
T Consensus 68 Kl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~-~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~ 137 (340)
T PF12416_consen 68 KLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKN-QKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKP 137 (340)
T ss_pred EEEEEEecCCCCcceeccEEEEEccccccccccc-cccCCCeeEccccccccccCCccEEEEEEEeccccc
Confidence 89999876 334566999999999877 3221 13568999999874443 4578999988877654
No 141
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=94.93 E-value=0.055 Score=52.93 Aligned_cols=92 Identities=12% Similarity=0.072 Sum_probs=65.6
Q ss_pred CceEEEEEEEeecCCCCCC--CCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcc
Q 036009 3 SSSLEIKVMFGKDLKAFNF--FQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGH 80 (318)
Q Consensus 3 ~~~L~VtVisA~dL~~~d~--~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~ 80 (318)
++.|-|+++.+++|+-... ..+.|-||++.++. ..+.||.+. .++.-=.|.|+|.+++.+.
T Consensus 50 tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~dr---------qh~aRt~vr-s~~~~f~w~e~F~~Dvv~~------- 112 (442)
T KOG1452|consen 50 TGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDR---------QHPARTRVR-SSGPGFAWAEDFKHDVVNI------- 112 (442)
T ss_pred cceEEEEEecccccccChhccCceeeeeeeeeecc---------cCccccccc-cCCCCccchhhceeecccc-------
Confidence 5788899999999985432 44789999999863 456777765 4457788999999998753
Q ss_pred eEEEEEEeecCcCCCCcEEEEEEEeCccccc
Q 036009 81 IFVHFELKHEGVMFGDKTIGEVRVPIKDLIS 111 (318)
Q Consensus 81 ~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~ 111 (318)
..+.|-||.|+.-.+.++.-.-.+.+..+.+
T Consensus 113 ~vl~~lvySW~pq~RHKLC~~g~l~~~~v~r 143 (442)
T KOG1452|consen 113 EVLHYLVYSWPPQRRHKLCHLGLLEAFVVDR 143 (442)
T ss_pred eeeeEEEeecCchhhccccccchhhhhhhhh
Confidence 4688888888766677754333344444443
No 142
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=94.86 E-value=0.55 Score=41.57 Aligned_cols=132 Identities=16% Similarity=0.145 Sum_probs=84.1
Q ss_pred ceEEEEEEEeecCCCCCC--CCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCC----
Q 036009 4 SSLEIKVMFGKDLKAFNF--FQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHD---- 77 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~--~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d---- 77 (318)
+-|.|.|+.++-.-...- -+..+.-.++.+.- +.++++|+.+.- ..+|.|+|.|.|.+......+
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f--------~~QRF~S~~Vp~-~~eP~f~e~Flf~l~~~~~~~~~~~ 79 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHF--------RGQRFRSKPVPC-ACEPDFNEEFLFELPRDSFGAGSTA 79 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEe--------cCceEecCCccc-ccCCCCCCcEEEEecccccccccch
Confidence 458888888874432211 04455556666653 258999998865 589999999999997653110
Q ss_pred ----CcceEEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCC--CC-cceEEEEEEEEeecC
Q 036009 78 ----CGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPD--GK-PNGVLTFSYKVNGMN 145 (318)
Q Consensus 78 ----~~~~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~s--Gk-~~G~L~ls~kf~~~~ 145 (318)
....-|.+.|...+..+...++|+-.+.=..++....+. ......|.... .| +.|.|.|.+.+.+..
T Consensus 80 ~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~-~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 80 TTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGS-TSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred hHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCc-cceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 001246666666665555578888777766666554421 14556666543 23 689999988887653
No 143
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=94.55 E-value=0.63 Score=39.65 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=48.6
Q ss_pred CeEEEEEEecCCCcchhcCC-ceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEEEEeecCcCCCC----cEEE
Q 036009 26 TLYVLVSIVSDDPAKTLEQK-QKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGD----KTIG 100 (318)
Q Consensus 26 DPYV~VsL~~~~p~~~~~~~-~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~feV~d~d~~~~D----d~IG 100 (318)
+.||.+.|..++. .+ . ....|+...-+..++.|||.+.|.+.=..|- ....|.|.|+..+....+ ..||
T Consensus 3 ~~~V~~~ly~g~~--~L--~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LP--r~a~L~~~l~~~~~~~~~~~~~~~lg 76 (142)
T PF00792_consen 3 KLYVECQLYHGGE--PL--CNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLP--REARLCFTLYGVDSKKKSKKKKVPLG 76 (142)
T ss_dssp EEEEEEEEEETTE--ES--S-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS---TTEEEEEEEEEEECSTTT--EEEEEE
T ss_pred eEEEEEEEEECCE--Ee--ecCeeeccccccccccceEeeEEEeecChHHCC--hhHeEEEEEEEecCCCccccceeEEE
Confidence 5688888774321 11 1 1336665543226999999988886544332 357899999986654444 6899
Q ss_pred EEEEeCccc
Q 036009 101 EVRVPIKDL 109 (318)
Q Consensus 101 ~a~VpLsdL 109 (318)
++.++|=+.
T Consensus 77 w~n~~lFd~ 85 (142)
T PF00792_consen 77 WVNLPLFDY 85 (142)
T ss_dssp EEEEESB-T
T ss_pred EEEEEeECC
Confidence 999998764
No 144
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=94.48 E-value=0.2 Score=44.09 Aligned_cols=79 Identities=11% Similarity=0.119 Sum_probs=52.8
Q ss_pred CccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEEEEeecCcCCCCcEEEEE
Q 036009 23 QKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIGEV 102 (318)
Q Consensus 23 gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~feV~d~d~~~~Dd~IG~a 102 (318)
...|.||++.|..+... + ..-..|..+.- +....|||-+.|.|.-..|- ....|.|.||+.........||.+
T Consensus 28 ~~~~l~V~~~l~~~~~~--L--~~pv~T~~~~f-~~~~~WnEwl~fpI~i~dLP--~~a~L~iti~~~~~~~~~~~vg~~ 100 (159)
T cd08397 28 PNSDLFVTCQVFDDGKP--L--TLPVQTSYKPF-KNRRNWNEWLTLPIKYSDLP--RNSQLAITIWDVSGTGKAVPFGGT 100 (159)
T ss_pred CCCCEEEEEEEEECCEe--c--cCcEEccccCC-CCCcccceeEEcccchhcCC--hhheEEEEEEEecCCCCceEEEEE
Confidence 45899999998753210 0 12345654432 35788999998887655442 356899999997643345689998
Q ss_pred EEeCcc
Q 036009 103 RVPIKD 108 (318)
Q Consensus 103 ~VpLsd 108 (318)
.++|=+
T Consensus 101 ~~~lFd 106 (159)
T cd08397 101 TLSLFN 106 (159)
T ss_pred EEeeEC
Confidence 888754
No 145
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=94.40 E-value=1.2 Score=39.55 Aligned_cols=100 Identities=20% Similarity=0.209 Sum_probs=52.3
Q ss_pred ceEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCc-chh----------cCCceEEcccccCCCCCCeEeeEEEEEccC
Q 036009 4 SSLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPA-KTL----------EQKQKHRTPTDKEGDGNPEWNHGMQFDLKG 72 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~-~~~----------~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~ 72 (318)
..|-|+..+++-=+. ......+..|+|++...+.. ..+ .......|.|... ..+|.|+|+|.+.|..
T Consensus 7 N~LYv~~~s~~f~k~-~k~~~rNi~v~v~lr~~d~~~~~~~~i~~~~~~~~~~~~~~S~v~yh-~k~P~f~deiKi~LP~ 84 (184)
T PF14429_consen 7 NDLYVYPKSGNFSKS-KKSSARNIEVTVELRDSDGNIKPLPCIYSRSSGPSFVTSYYSSVYYH-NKNPQFNDEIKIQLPP 84 (184)
T ss_dssp EEEEEEEEEEE-SSS-SSSS---EEEEEEEEETTS--B--S-EE-TTS--S-BS-EE----TT--SS-EEEEEEEEEE-C
T ss_pred eeEEEEeCEEEECCC-CCCCcccEEEEEEEEeCCCCccccceEECCCCCCCcceEEEEEEEec-CCCCCccEEEEEEcCc
Confidence 457788777763211 11335677888887753321 011 0123566767655 4799999999999987
Q ss_pred cccCCCcceEEEEEEeecCcCC-C--CcEEEEEEEeCcc
Q 036009 73 ILFHDCGHIFVHFELKHEGVMF-G--DKTIGEVRVPIKD 108 (318)
Q Consensus 73 ~~l~d~~~~~L~feV~d~d~~~-~--Dd~IG~a~VpLsd 108 (318)
... + ...|.|++++...-. + +..+|.+-+||-+
T Consensus 85 ~l~-~--~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 85 DLF-P--KHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp CCC-T--TEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred hhc-c--cEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 532 2 456888888743211 2 2699999999987
No 146
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=94.06 E-value=0.48 Score=38.66 Aligned_cols=84 Identities=11% Similarity=0.141 Sum_probs=57.3
Q ss_pred cCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEEEEeecCcCCCCcEEEEEEE
Q 036009 25 LTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIGEVRV 104 (318)
Q Consensus 25 ~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~feV~d~d~~~~Dd~IG~a~V 104 (318)
.+..|++.+++ +....|.-... .+-.|+++|.|.+.. ...|.|.|+-.|- ..+.|..-+
T Consensus 9 ~eV~avLklDn---------~~VgqT~Wk~~--s~q~WDQ~Fti~LdR-------sRELEI~VywrD~---RslCav~~l 67 (98)
T cd08687 9 SEVSAVLKLDN---------TVVGQTQWKPK--SNQAWDQSFTLELER-------SRELEIAVYWRDW---RSLCAVKFL 67 (98)
T ss_pred cceEEEEEEcC---------eEEeecccccc--ccccccceeEEEeec-------ccEEEEEEEEecc---hhhhhheee
Confidence 67888999975 35777876543 489999999999975 3579999986551 246677777
Q ss_pred eCcccccccCceeEEEEEEEeCCCCCcceEEEEEEEE
Q 036009 105 PIKDLISEFNGVVRFVDYEVRNPDGKPNGVLTFSYKV 141 (318)
Q Consensus 105 pLsdLl~~~~g~~~~~sy~Lr~~sGk~~G~L~ls~kf 141 (318)
-|.|...+ .... -.+.|.|...++|
T Consensus 68 rLEd~~~~-------~~~~-----lepqg~l~~ev~f 92 (98)
T cd08687 68 KLEDERHE-------VQLD-----MEPQLCLVAELTF 92 (98)
T ss_pred Ehhhhccc-------ceec-----cccccEEEEEEEe
Confidence 77773321 1122 2367777777776
No 147
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=93.52 E-value=1 Score=41.05 Aligned_cols=58 Identities=22% Similarity=0.368 Sum_probs=40.9
Q ss_pred ceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEEEEeecCcC-CCC-cEEEEEEEeCc
Q 036009 46 QKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVM-FGD-KTIGEVRVPIK 107 (318)
Q Consensus 46 ~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~feV~d~d~~-~~D-d~IG~a~VpLs 107 (318)
...+|-|...+ .+|.|||++.+.|....+. ...|+|++++...- ..+ +.+|.+-+||-
T Consensus 53 se~~S~V~yH~-~~P~W~EtiKi~lP~~~~~---~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYHN-NSPRWNETIKLPIPIDKFR---GSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEcC-CCCCCceeEEEecChhhCC---CeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 46788877654 7999999999999875432 45788888764311 122 57898888874
No 148
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=92.99 E-value=0.14 Score=55.06 Aligned_cols=7 Identities=14% Similarity=0.510 Sum_probs=4.0
Q ss_pred ccCCccC
Q 036009 311 RSSSWSG 317 (318)
Q Consensus 311 ~~~~~~~ 317 (318)
+-+||-+
T Consensus 641 ~~cFWvk 647 (1102)
T KOG1924|consen 641 ENCFWVK 647 (1102)
T ss_pred ccceeee
Confidence 4567743
No 149
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=92.21 E-value=2.4 Score=37.59 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=38.4
Q ss_pred cccccCCCCCCeEeeEEEEEccCcccCCCcceEEEEEEeecCcC-----CCCcEEEEEEEeCcc
Q 036009 50 TPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVM-----FGDKTIGEVRVPIKD 108 (318)
Q Consensus 50 Tkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~feV~d~d~~-----~~Dd~IG~a~VpLsd 108 (318)
|.++..+ .+|.|+|+|.+.|+.. +.+ ...|.|++++...- .....+|-+-+||-+
T Consensus 56 ~sv~~~~-k~p~f~deiKi~LP~~-l~~--~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYH-KNPVFNDEIKIQLPAD-LTP--QHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcC-CCCCCceeEEEecCCc-cCC--CeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3344444 7999999999999654 322 45688888874421 235689999999875
No 150
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=91.34 E-value=3 Score=38.27 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=40.3
Q ss_pred ceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEEEEeecCcC-CC---CcEEEEEEEeCc
Q 036009 46 QKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVM-FG---DKTIGEVRVPIK 107 (318)
Q Consensus 46 ~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~feV~d~d~~-~~---Dd~IG~a~VpLs 107 (318)
...+|-|...+ .+|.|||++.+.|....+ ....|+|++++...- .+ .+.+|.+-+||-
T Consensus 53 se~~S~V~Yh~-~~P~W~EtIKl~lP~~~~---~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQV-DKPKWFETFKVAIPIEDF---KSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeec-CCCCCceeEEEecChhhC---CCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 46777775543 699999999999987543 246788888763211 12 357888888874
No 151
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=89.69 E-value=0.81 Score=47.60 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=46.9
Q ss_pred eEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEEEEeecCc----CCCCcEEEEEEEeCccccccc
Q 036009 47 KHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGV----MFGDKTIGEVRVPIKDLISEF 113 (318)
Q Consensus 47 k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~feV~d~d~----~~~Dd~IG~a~VpLsdLl~~~ 113 (318)
..+|.++++ .+||.|-++|.+....+. ...|+|++++.+. +...+|+|++...++.+....
T Consensus 42 ~~rte~i~~-~~~p~f~~~~~l~y~fE~-----vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~ 106 (529)
T KOG1327|consen 42 VGRTEVIRN-VLNPFFTKKFLLQYRFEK-----VQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSS 106 (529)
T ss_pred ccceeeeec-cCCccceeeechhheeee-----eeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhh
Confidence 458888876 489999999988877643 2368999988553 345689999999999887653
No 152
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=88.82 E-value=3.4 Score=33.24 Aligned_cols=78 Identities=13% Similarity=0.039 Sum_probs=47.5
Q ss_pred EEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEE
Q 036009 6 LEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHF 85 (318)
Q Consensus 6 L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~f 85 (318)
+.+++...+++.........+.||.+.|..+... + .....|+.+ .....+.|||-+.|.+.-..+- ....|.|
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~--l--~~pv~t~~~-~~~~~~~Wnewl~f~i~i~~LP--r~a~L~~ 85 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKL--L--CLPVSTSYK-PFFPSVKWNEWLTFPIQISDLP--REARLCI 85 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEE--c--cCcEEeccc-CCCCCcccceeEEccCchhcCC--hhhEEEE
Confidence 5666777776654432223589999988753210 0 123455543 2234699999998887544332 3567889
Q ss_pred EEeec
Q 036009 86 ELKHE 90 (318)
Q Consensus 86 eV~d~ 90 (318)
.||+.
T Consensus 86 ~i~~~ 90 (100)
T smart00142 86 TIYEV 90 (100)
T ss_pred EEEEe
Confidence 99974
No 153
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=88.55 E-value=3.4 Score=36.50 Aligned_cols=73 Identities=19% Similarity=0.232 Sum_probs=54.1
Q ss_pred CccCeEEEEEEecCCCcchhcCCceEEcccccC-CCCCCeEeeEEEEEccCcccCCCcceEEEEEEeecCcCCCCcEEEE
Q 036009 23 QKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKE-GDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIGE 101 (318)
Q Consensus 23 gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~-~g~NPvWNEtf~F~v~~~~l~d~~~~~L~feV~d~d~~~~Dd~IG~ 101 (318)
.+..-|++|.+.+ +...+|+...- .+..-.+|+.|.+.|..-. ..|.++||.... .++.+|++
T Consensus 35 ~~~~~~ikl~~N~---------k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P------esi~l~i~E~~~-~~~~~la~ 98 (168)
T PF15625_consen 35 QKTRYYIKLFFND---------KEVSRTRSRPLWSDFRVHFNEIFNVQITRWP------ESIKLEIYEKSG-LSDRLLAE 98 (168)
T ss_pred hheeEEEEEEECC---------EEEEeeeeEecCCCeEEeccCEEEEEEecCC------CEEEEEEEEccC-ccceEEEE
Confidence 4578999999975 35677765432 2344667899999997632 369999998775 78999999
Q ss_pred EEEeCccccc
Q 036009 102 VRVPIKDLIS 111 (318)
Q Consensus 102 a~VpLsdLl~ 111 (318)
+.|||.....
T Consensus 99 v~vpvP~~~~ 108 (168)
T PF15625_consen 99 VFVPVPGSTV 108 (168)
T ss_pred EEeeCCCCcc
Confidence 9999876544
No 154
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=88.39 E-value=1.5 Score=36.10 Aligned_cols=83 Identities=11% Similarity=0.160 Sum_probs=52.2
Q ss_pred EEEEEccCcccCC-CcceEEEEEEeecCc---CCCCcEEEEEEEeCccccccc-----------CceeEEEEEEEeCCCC
Q 036009 65 GMQFDLKGILFHD-CGHIFVHFELKHEGV---MFGDKTIGEVRVPIKDLISEF-----------NGVVRFVDYEVRNPDG 129 (318)
Q Consensus 65 tf~F~v~~~~l~d-~~~~~L~feV~d~d~---~~~Dd~IG~a~VpLsdLl~~~-----------~g~~~~~sy~Lr~~sG 129 (318)
...|.+....+.. .....|.+.++.... .....+||.+.|++.+....- .-......|.|.+..|
T Consensus 12 ScLF~~~~~~L~~~l~~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~ 91 (112)
T PF14924_consen 12 SCLFALTPEDLQQSLSSFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENG 91 (112)
T ss_pred EEEEEcCHHHHHHHhhCCceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCC
Confidence 3455555443321 112345565554221 234569999999998766321 0012356789999989
Q ss_pred CcceEEEEEEEEeecCCC
Q 036009 130 KPNGVLTFSYKVNGMNSA 147 (318)
Q Consensus 130 k~~G~L~ls~kf~~~~~~ 147 (318)
+..|+|.|.||+..-++.
T Consensus 92 ~~~G~I~l~iRLsclG~~ 109 (112)
T PF14924_consen 92 NPVGEISLYIRLSCLGSS 109 (112)
T ss_pred ceeeeEEEEEEEecCccc
Confidence 999999999999876653
No 155
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=84.76 E-value=15 Score=33.32 Aligned_cols=59 Identities=17% Similarity=0.296 Sum_probs=40.8
Q ss_pred ceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEEEEeecCc--CC-------CCcEEEEEEEeCcc
Q 036009 46 QKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGV--MF-------GDKTIGEVRVPIKD 108 (318)
Q Consensus 46 ~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~feV~d~d~--~~-------~Dd~IG~a~VpLsd 108 (318)
....|.|...+ .+|.|+|++.+.|.-.. .+ ...|.|++++..- -. ....+|-+-+||-.
T Consensus 56 ~~~~s~V~yh~-k~P~f~dEiKI~LP~~l-~~--~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHN-QNPEFYDEIKIELPTQL-HE--KHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcC-CCCccceeEEEecCCcC-CC--CeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 45677777664 89999999999998753 33 3458888887431 11 13578888888864
No 156
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=83.66 E-value=3.6 Score=37.17 Aligned_cols=59 Identities=17% Similarity=0.266 Sum_probs=40.4
Q ss_pred ceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEEEEeecCcCC------CCcEEEEEEEeCcc
Q 036009 46 QKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVMF------GDKTIGEVRVPIKD 108 (318)
Q Consensus 46 ~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~feV~d~d~~~------~Dd~IG~a~VpLsd 108 (318)
....|.|...+ .+|.|+|+|.+.|.... .+ ...|.|++++...-. ..+.+|-+-+||-+
T Consensus 54 ~~~~S~V~yHn-k~P~f~DEiKi~LP~~l-~~--~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHN-KSPDFYDEIKIKLPADL-TD--NHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeC-CCCcccceEEEEcCCCC-CC--CeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 46777777664 79999999999998753 33 345888887632111 13578888888753
No 157
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=80.47 E-value=29 Score=30.53 Aligned_cols=91 Identities=15% Similarity=0.129 Sum_probs=59.2
Q ss_pred EEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcC-Cc-eEEcccccCC----CCCCeEeeEEEEEccCcccCCCcc
Q 036009 7 EIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQ-KQ-KHRTPTDKEG----DGNPEWNHGMQFDLKGILFHDCGH 80 (318)
Q Consensus 7 ~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~-~~-k~KTkv~k~~----g~NPvWNEtf~F~v~~~~l~d~~~ 80 (318)
.-.|.+|++. ...+.||+-.+.-. +++++.. .. ...|.+.+.+ +..-.||.-|.+.+.....+ .-
T Consensus 5 ~G~I~~a~~f------~~~~l~~~y~~~~g-~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~--gw 75 (168)
T PF07162_consen 5 IGEIESAEGF------EEDNLYCRYQLVHG-PDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQ--GW 75 (168)
T ss_pred EEEEEEEECC------CCCCEEEEEEEEeC-CCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCC--CC
Confidence 3467778744 34578999888742 2343321 22 4666655422 34688999888887665432 23
Q ss_pred eEEEEEEeecCcCCCCcEEEEEEEeC
Q 036009 81 IFVHFELKHEGVMFGDKTIGEVRVPI 106 (318)
Q Consensus 81 ~~L~feV~d~d~~~~Dd~IG~a~VpL 106 (318)
-.|.|+|+..|.+.++++.|-..+.|
T Consensus 76 P~L~l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 76 PQLVLQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred ceEEEEEEEEcccCCeEEeEEeEEEe
Confidence 57999999999888999987654444
No 158
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=80.38 E-value=16 Score=32.05 Aligned_cols=100 Identities=16% Similarity=0.138 Sum_probs=54.1
Q ss_pred eEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccC-CCCCCeEeeEEEEEccCcccCCCcceEE
Q 036009 5 SLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKE-GDGNPEWNHGMQFDLKGILFHDCGHIFV 83 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~-~g~NPvWNEtf~F~v~~~~l~d~~~~~L 83 (318)
-|.|.|-+.. |++.. .-.|||+.|++.+.+.. .-...+.|.+... .+..=.||...+++..-+.+.+ +..|
T Consensus 14 ~l~v~Iekig-lkda~--~~~~P~~tVSV~D~~G~---~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~--Gaai 85 (147)
T PF14186_consen 14 YLSVFIEKIG-LKDAS--QYIDPYFTVSVKDGNGK---DVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPK--GAAI 85 (147)
T ss_dssp EEEEEEEEEE--TTGG--G-EEEEEEEEEE-TTS----BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-T--T-EE
T ss_pred eEEEEEEEEE-ECChH--HccCCeEEEEEECCCCC---CccccccCCCcccccCCEEEEcccEEEcCCHHHCCC--ceEE
Confidence 4666655544 76543 35799999999853321 1234567776522 2234567888887765554543 5678
Q ss_pred EEEEeecCcCCC-CcEEEEEEEeCcccccc
Q 036009 84 HFELKHEGVMFG-DKTIGEVRVPIKDLISE 112 (318)
Q Consensus 84 ~feV~d~d~~~~-Dd~IG~a~VpLsdLl~~ 112 (318)
.||+++.....+ -...+++-+.+.++..+
T Consensus 86 ~fE~kH~K~kk~k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 86 FFEFKHYKPKKKKTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp EEEEEEEETTTTCEEEEEEEEEEGGG--SE
T ss_pred EEEEEeeeccceeeeeeEEEEEEhhhccCC
Confidence 899998653222 23678899999888765
No 159
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=80.10 E-value=2.5 Score=46.47 Aligned_cols=104 Identities=21% Similarity=0.221 Sum_probs=73.4
Q ss_pred cCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEEEEeecCcCCCCcEEEEEEE
Q 036009 25 LTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIGEVRV 104 (318)
Q Consensus 25 ~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~feV~d~d~~~~Dd~IG~a~V 104 (318)
++.|+.+.|.. ....+|....+.-.+|.|.+.|.+..... ...+.|.|.+.+..+..+++|.+.+
T Consensus 138 ~e~Ylt~~l~~---------~~~~~t~~~~~f~e~s~~~f~~~~~~~h~------~g~v~~~~~~~~~~G~s~~w~~v~~ 202 (887)
T KOG1329|consen 138 LENYLTVVLHK---------ARYRRTHVIYEFLENSRWSFSFDIGFAHK------AGYVIFRVKGARVPGWSKRWGRVKI 202 (887)
T ss_pred ccchheeeech---------hhhhchhhhhcccccchhhhhcccccccc------ccEEEEeecCCccccceeEEEEecc
Confidence 48899998864 24567777766557999999998877653 3468888888775444889999999
Q ss_pred eCcccccccCceeEEEEEEEeCCCCCc--ce-EEEEEEEEeecCC
Q 036009 105 PIKDLISEFNGVVRFVDYEVRNPDGKP--NG-VLTFSYKVNGMNS 146 (318)
Q Consensus 105 pLsdLl~~~~g~~~~~sy~Lr~~sGk~--~G-~L~ls~kf~~~~~ 146 (318)
++-.+..+. ....++.+.+.+++. +| .+.+.+.|.....
T Consensus 203 s~~~~~~~~---~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~~~ 244 (887)
T KOG1329|consen 203 SFLQYCSGH---RIGGWFPILDNDGKPHQKGSNESLRLGFTPMEK 244 (887)
T ss_pred chhhhhccc---cccceeeeeccCCccccCCcccceEEeeEeech
Confidence 999988753 245678888777764 23 3445455554443
No 160
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=73.35 E-value=45 Score=29.15 Aligned_cols=94 Identities=17% Similarity=0.036 Sum_probs=61.8
Q ss_pred eEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCC-------
Q 036009 5 SLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHD------- 77 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d------- 77 (318)
.|+|.-+.|-++.-. .+.|.|..|++.| +.++|+.... --==.++|+|+|.-......|
T Consensus 3 eL~i~aVTCPGv~L~---~~~~vyL~v~~lg----------~~~~T~~~pp-vFPllfhek~~FeK~F~~~~dp~~l~~~ 68 (140)
T PF14909_consen 3 ELEIHAVTCPGVWLC---DKGDVYLSVCILG----------QYKRTRCLPP-VFPLLFHEKFRFEKVFPNAVDPAQLADL 68 (140)
T ss_pred EEEEEEEecCCeEeC---CCCCEEEEEEEcc----------cEeecccCCC-cCCeeEeeEEEeEEEecCCCCHHHHHHH
Confidence 467777777766433 3679999999986 5788987643 122345899999853322111
Q ss_pred CcceEEEEEEeecCcCCCCcEEEEEEEeCccccccc
Q 036009 78 CGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLISEF 113 (318)
Q Consensus 78 ~~~~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~ 113 (318)
.....++||+...... .++.|+...-.+.|++-..
T Consensus 69 Le~e~~~iELiQl~~~-~g~iLA~ye~n~rDfLfP~ 103 (140)
T PF14909_consen 69 LEDETVYIELIQLVPP-AGEILAYYEENTRDFLFPE 103 (140)
T ss_pred hhcCcEEEEEEEEeCC-CCcEEEEEeccccceEcCC
Confidence 1134688888875532 2678898888888887643
No 161
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=71.60 E-value=43 Score=33.76 Aligned_cols=98 Identities=13% Similarity=0.172 Sum_probs=61.2
Q ss_pred CccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCe-EeeEEEEEccCcccCCCcceEEEEEEeecCcCCCCcEEEE
Q 036009 23 QKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPE-WNHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIGE 101 (318)
Q Consensus 23 gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPv-WNEtf~F~v~~~~l~d~~~~~L~feV~d~d~~~~Dd~IG~ 101 (318)
..-.-|+.++.+. ..++|..+.-+-.+-+ -.+...+.+.- -...|++.|+... +.+..-||.
T Consensus 72 k~khiyIef~~Gr----------~d~TT~~IpTsKK~RI~IqqRV~IkIRQ------cDnTLkI~lfKKk-Lvkk~hIgd 134 (508)
T PTZ00447 72 KYKHIYIIFSTDK----------YDFTTDEIPTNKKNRIHIDQRVDIKIRQ------CDETLRVDLFTTK-LTKKVHIGQ 134 (508)
T ss_pred cceeEEEEEEcCc----------eEEEccccccCcCceEEEeeeeeeeeee------cCceEEEEEEecc-ccceeEEEE
Confidence 3456777777752 3566644433222222 23434444432 1347899999876 567788999
Q ss_pred EEEeCc-ccccccCceeEEEEEEEeCCCCCcceEEEEEEE
Q 036009 102 VRVPIK-DLISEFNGVVRFVDYEVRNPDGKPNGVLTFSYK 140 (318)
Q Consensus 102 a~VpLs-dLl~~~~g~~~~~sy~Lr~~sGk~~G~L~ls~k 140 (318)
+.+.+. +++... -....||-+ .++|+..+.|+||+.
T Consensus 135 I~InIn~dIIdk~--FPKnkWy~c-~kDGq~~cRIqLSFh 171 (508)
T PTZ00447 135 IKIDINASVISKS--FPKNEWFVC-FKDGQEICKVQMSFY 171 (508)
T ss_pred EEecccHHHHhcc--CCccceEEE-ecCCceeeeEEEEeh
Confidence 999996 455432 135688888 458998999999874
No 162
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=61.73 E-value=53 Score=35.57 Aligned_cols=116 Identities=17% Similarity=0.203 Sum_probs=70.8
Q ss_pred eEEEEEEEeecCCCCCCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEE
Q 036009 5 SLEIKVMFGKDLKAFNFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVH 84 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~ 84 (318)
.|+|.|+...+|+.... ..=.||++.+.+ .+.+|.-.. ..-|.|...=.|..... ...++
T Consensus 342 smevvvmevqglksvap--nrivyctmeveg----------eklqtdqae--askp~wgtqgdfstthp------lpvvk 401 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVAP--NRIVYCTMEVEG----------EKLQTDQAE--ASKPKWGTQGDFSTTHP------LPVVK 401 (1218)
T ss_pred eeeEEEeeeccccccCC--CeeEEEEEEecc----------cccccchhh--hcCCCCCcCCCcccCCC------CceeE
Confidence 47889999999998763 235899999976 366676554 35899998877776553 34577
Q ss_pred EEEeecCc---CCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCC--CcceEEEEEEEEeecC
Q 036009 85 FELKHEGV---MFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDG--KPNGVLTFSYKVNGMN 145 (318)
Q Consensus 85 feV~d~d~---~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sG--k~~G~L~ls~kf~~~~ 145 (318)
|.++.+.. -+.|+-||.+.+--..-. .....|+...-++. ...=.|+|++++..+.
T Consensus 402 vklftestgvlaledkelgrvil~ptpns-----~ks~ewh~mtvpknsqdqdlkiklavrmdkp~ 462 (1218)
T KOG3543|consen 402 VKLFTESTGVLALEDKELGRVILQPTPNS-----AKSPEWHTMTVPKNSQDQDLKIKLAVRMDKPP 462 (1218)
T ss_pred EEEEeecceeEEeechhhCeEEEecCCCC-----cCCccceeeecCCCCcCccceEEEEEeccCCC
Confidence 77776542 135788898765432111 11223444433322 1233566666665443
No 163
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=58.07 E-value=29 Score=37.94 Aligned_cols=11 Identities=9% Similarity=0.102 Sum_probs=5.2
Q ss_pred CCCCCCCCCcc
Q 036009 265 NWPDAGPQMGY 275 (318)
Q Consensus 265 ~~~~~~~~~~~ 275 (318)
|||...|.-+|
T Consensus 329 ~pp~~p~l~~~ 339 (830)
T KOG1923|consen 329 QPPGVPFLLTF 339 (830)
T ss_pred CCCCCCcccCC
Confidence 55555544333
No 164
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.97 E-value=31 Score=35.59 Aligned_cols=15 Identities=40% Similarity=0.864 Sum_probs=7.4
Q ss_pred CCCCCCCCCCCCCCC
Q 036009 218 PGTPHVPQESYYPPP 232 (318)
Q Consensus 218 ~~~~~~~~~~~~p~~ 232 (318)
.+....+|+.-||++
T Consensus 408 ~~s~p~pq~qNyppp 422 (483)
T KOG2236|consen 408 DNSGPSPQQQNYPPP 422 (483)
T ss_pred CCCCCCcccCCCCCC
Confidence 344444555556554
No 165
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=48.29 E-value=7.7 Score=19.10 Aligned_cols=7 Identities=57% Similarity=1.436 Sum_probs=5.6
Q ss_pred CCCcccc
Q 036009 271 PQMGYHN 277 (318)
Q Consensus 271 ~~~~~~~ 277 (318)
|+||||.
T Consensus 2 psmgf~g 8 (10)
T PF08262_consen 2 PSMGFHG 8 (10)
T ss_pred Ccccccc
Confidence 7899984
No 166
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=46.90 E-value=14 Score=42.18 Aligned_cols=10 Identities=50% Similarity=1.006 Sum_probs=5.1
Q ss_pred CCCCCCCccC
Q 036009 252 QQPPPASPMA 261 (318)
Q Consensus 252 ~~~~~~~~~~ 261 (318)
|+||||+|++
T Consensus 23 ~pppPppPg~ 32 (2365)
T COG5178 23 QPPPPPPPGV 32 (2365)
T ss_pred CCCCccCCCc
Confidence 4445555554
No 167
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=42.19 E-value=1e+02 Score=30.71 Aligned_cols=91 Identities=16% Similarity=0.334 Sum_probs=57.1
Q ss_pred eEEEEEEEeecCCCCC----C--CCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeE--eeEEEEEccCcc--
Q 036009 5 SLEIKVMFGKDLKAFN----F--FQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEW--NHGMQFDLKGIL-- 74 (318)
Q Consensus 5 ~L~VtVisA~dL~~~d----~--~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvW--NEtf~F~v~~~~-- 74 (318)
.|.|+|..|++|...- . .+....|...+|.|. ...|..-++ ..+|.+ ++.-.|.+....
T Consensus 193 vLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn----------~Vt~~~F~~-l~~~~f~~er~s~vRirSS~~~ 261 (340)
T PF12416_consen 193 VLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGN----------DVTTEPFKS-LSSPSFPPERASGVRIRSSLRV 261 (340)
T ss_pred EEEEehhhhhhHHhhccccccccCCCccEEEEEEecCc----------EeEeeeccc-cCCCCcCeeeeeEEeecccHHH
Confidence 5788999999886541 1 123578888888763 445554433 357766 343335554321
Q ss_pred ----cCCCcceEEEEEEeecCcCCCCcEEEEEEEeCccccccc
Q 036009 75 ----FHDCGHIFVHFELKHEGVMFGDKTIGEVRVPIKDLISEF 113 (318)
Q Consensus 75 ----l~d~~~~~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~ 113 (318)
++. ...|.|-+++ +|..||.+.|++..|+...
T Consensus 262 L~~yf~~--~~~L~I~Lc~-----g~~~Lg~~~v~l~~Ll~~~ 297 (340)
T PF12416_consen 262 LRRYFQQ--IPKLQIHLCC-----GNQSLGSTSVPLQPLLPKD 297 (340)
T ss_pred HHHHHhh--CCCeEEEEee-----CCcEEEEEEEEhhhccCCC
Confidence 121 2356667766 4688999999999998653
No 168
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=40.17 E-value=68 Score=24.79 Aligned_cols=38 Identities=16% Similarity=0.053 Sum_probs=27.7
Q ss_pred ccCceeEEEEEEEeCCC---CCcceEEEEEEEEeecCCCCC
Q 036009 112 EFNGVVRFVDYEVRNPD---GKPNGVLTFSYKVNGMNSAIG 149 (318)
Q Consensus 112 ~~~g~~~~~sy~Lr~~s---Gk~~G~L~ls~kf~~~~~~~~ 149 (318)
..+.....+|..|.+++ ...+|.|++++.+...+.+..
T Consensus 9 qP~H~~~~KW~~L~dP~D~~~G~kGYlKv~i~Vlg~GD~~~ 49 (72)
T PF08151_consen 9 QPDHQFYRKWALLTDPDDTSAGVKGYLKVDISVLGPGDEPP 49 (72)
T ss_pred CCCCeeEeceEEecCCCCCccCCceEEEEEEEEEcCCCcCC
Confidence 33345557888888874 336999999999998866554
No 169
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=36.30 E-value=81 Score=32.32 Aligned_cols=12 Identities=42% Similarity=0.656 Sum_probs=5.8
Q ss_pred CCCCCCCCCCCC
Q 036009 224 PQESYYPPPNAC 235 (318)
Q Consensus 224 ~~~~~~p~~~~~ 235 (318)
.|-++.|++-.-
T Consensus 330 ~q~p~~Pp~~~l 341 (487)
T KOG4672|consen 330 FQPPYGPPPGML 341 (487)
T ss_pred CCCCCCCCCccc
Confidence 344555665333
No 170
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=32.96 E-value=31 Score=35.44 Aligned_cols=6 Identities=50% Similarity=0.629 Sum_probs=2.3
Q ss_pred EEEEEE
Q 036009 99 IGEVRV 104 (318)
Q Consensus 99 IG~a~V 104 (318)
||++.+
T Consensus 147 lgWVav 152 (480)
T KOG2675|consen 147 LGWVAV 152 (480)
T ss_pred ceeEec
Confidence 344333
No 171
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=31.28 E-value=2.6e+02 Score=28.82 Aligned_cols=12 Identities=33% Similarity=0.559 Sum_probs=4.9
Q ss_pred ccCCCCCCCCCC
Q 036009 276 HNYSMPGTWGQS 287 (318)
Q Consensus 276 ~~~~~~~~~~~~ 287 (318)
|.-++.--||++
T Consensus 374 ~~l~p~~p~Gp~ 385 (487)
T KOG4672|consen 374 HGLSPPNPMGPP 385 (487)
T ss_pred CCCCCCCCCCCC
Confidence 333334444443
No 172
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=28.90 E-value=2.3e+02 Score=32.04 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=39.4
Q ss_pred ceEEEEEEEeecCCCCCCCCccCeEEE--EEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcce
Q 036009 4 SSLEIKVMFGKDLKAFNFFQKLTLYVL--VSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHI 81 (318)
Q Consensus 4 ~~L~VtVisA~dL~~~d~~gk~DPYV~--VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~ 81 (318)
+.++|+++++..+... .+.|-+|. +.|.-+. ..+ ++.+.|.-+ ++..++.||+.+.|+|.=..+- ...
T Consensus 343 ~~frI~l~~is~~n~~---~t~~~kV~V~~~lyhG~--e~L--c~~~sTs~v-~~~~~~~Wn~~leFDI~i~DLP--r~A 412 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNLP---ETVDLKVFVEAGLYHGT--EVL--CKTRSTSEV-PGCSFPLWNEWLEFDIYIKDLP--RMA 412 (1076)
T ss_pred CceEEEEeeccccCCC---cccceEEEEEEEEEECC--eeh--hcccccCCC-CCccchhccceeEeeeecCCCC--hhh
Confidence 5578888887766422 23344444 4444211 111 111333333 3357899999988887543232 223
Q ss_pred EEEEEEee
Q 036009 82 FVHFELKH 89 (318)
Q Consensus 82 ~L~feV~d 89 (318)
.|-|.|+.
T Consensus 413 rLc~~i~~ 420 (1076)
T KOG0904|consen 413 RLCLAIYA 420 (1076)
T ss_pred hheeeeeE
Confidence 45555554
No 173
>PHA03211 serine/threonine kinase US3; Provisional
Probab=25.77 E-value=61 Score=33.01 Aligned_cols=9 Identities=44% Similarity=1.637 Sum_probs=3.7
Q ss_pred CCCCC-CCCC
Q 036009 228 YYPPP-NACY 236 (318)
Q Consensus 228 ~~p~~-~~~~ 236 (318)
.|+|+ -+|-
T Consensus 38 ~~~~~~~~~~ 47 (461)
T PHA03211 38 FYNPPRGVCF 47 (461)
T ss_pred CCCCcccccc
Confidence 34333 4444
No 174
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.31 E-value=15 Score=39.52 Aligned_cols=51 Identities=18% Similarity=0.099 Sum_probs=33.8
Q ss_pred CccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEEEEeec
Q 036009 23 QKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHE 90 (318)
Q Consensus 23 gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~feV~d~ 90 (318)
...++|+-|.+.-. +...+.+.+. +.+|.||++|++.+... ..+.|.|+..
T Consensus 26 ~al~~y~~v~vk~~---------~~~~~~~~~~-~~~~~~~~~F~~~v~~~-------~~~~i~v~~~ 76 (694)
T KOG0694|consen 26 QALQPYLAVELKVK---------QGAENMTKVE-LRIPELRETFHVEVVAG-------GAKNIIVLLK 76 (694)
T ss_pred hhhhhhheecccee---------ecccccCCCC-CCCchhhhheeeeeecC-------CceEEEEEec
Confidence 45789998888531 2233333333 58999999999997653 3466777664
No 175
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=25.13 E-value=21 Score=38.46 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=34.1
Q ss_pred EEEEEeecCCCC----CCCCccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEc
Q 036009 8 IKVMFGKDLKAF----NFFQKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDL 70 (318)
Q Consensus 8 VtVisA~dL~~~----d~~gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v 70 (318)
+++|+|.++... ...-+.+++++++++. +..+|+.... +.+|+|||. .|..
T Consensus 284 l~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~----------~~frt~~~~~-~e~piyNe~-~~E~ 338 (975)
T KOG2419|consen 284 LTLIGAEMKYDIVEDVAKLFKDKWLAITSFGE----------QTFRTEISDD-TEKPIYNED-ERED 338 (975)
T ss_pred HHHhhhhcccchhhhhhhccCCCchheeecch----------hhhhhhhhcc-ccccccccc-cccc
Confidence 455666665321 1123678999998862 5788988765 589999997 4443
No 176
>PF14472 DUF4429: Domain of unknown function (DUF4429)
Probab=25.08 E-value=1.1e+02 Score=24.43 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=28.4
Q ss_pred EEEEEEeecCcCCCCcEEEEEEEeCcccccccCceeEEEEEEEeCCCCCcceEEEEEEEE
Q 036009 82 FVHFELKHEGVMFGDKTIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKPNGVLTFSYKV 141 (318)
Q Consensus 82 ~L~feV~d~d~~~~Dd~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~~G~L~ls~kf 141 (318)
.|+|+-..........-.|+.+|+|++|.. ++++.+.+...|.|+|.++=
T Consensus 7 ~V~i~~~g~~a~~~~~~~G~~~ipl~~i~g----------V~~~~pg~~~~G~Lrf~~~~ 56 (94)
T PF14472_consen 7 TVRIRWGGWRAPRAKRALGEKTIPLSAISG----------VEWKPPGGLTNGYLRFVLRG 56 (94)
T ss_pred EEEEEECCccchhhhccCCCEEEEHHHcce----------EEEEcCCceeEEEEEEEECC
Confidence 455554322211223468999999998753 33333333457888777654
No 177
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=24.74 E-value=2.7e+02 Score=28.82 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=39.9
Q ss_pred eEEEEEEeecCc-----C-CCCcEEEEEEEeCcccccccCc--eeEEEEEEEeCCC---CC-cceEEEEEEEEeec
Q 036009 81 IFVHFELKHEGV-----M-FGDKTIGEVRVPIKDLISEFNG--VVRFVDYEVRNPD---GK-PNGVLTFSYKVNGM 144 (318)
Q Consensus 81 ~~L~feV~d~d~-----~-~~Dd~IG~a~VpLsdLl~~~~g--~~~~~sy~Lr~~s---Gk-~~G~L~ls~kf~~~ 144 (318)
..|+|.||.-+. + .+.++||.++|+|. +...... .....|..|-+.+ ++ ...+|+|.++..+.
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpD 169 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPD 169 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCC
Confidence 468999997221 2 35689999999996 3322211 3445677775542 22 25689999987764
No 178
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=24.08 E-value=6.2e+02 Score=28.27 Aligned_cols=14 Identities=21% Similarity=0.479 Sum_probs=8.0
Q ss_pred EEEEEEEeCccccc
Q 036009 98 TIGEVRVPIKDLIS 111 (318)
Q Consensus 98 ~IG~a~VpLsdLl~ 111 (318)
-+|...||...|..
T Consensus 508 ~lGVt~IP~~kLt~ 521 (894)
T KOG0132|consen 508 ELGVTYIPWEKLTD 521 (894)
T ss_pred ccCeeEeehHhcCH
Confidence 45666666654443
No 179
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.91 E-value=80 Score=34.33 Aligned_cols=78 Identities=13% Similarity=0.092 Sum_probs=45.2
Q ss_pred CccCeEEEEEEecCCCcchhcCCceEEcccccCCCCCCeEeeEEEEEccCcccCCCcceEEEEEEeecCcCCCCcEEEEE
Q 036009 23 QKLTLYVLVSIVSDDPAKTLEQKQKHRTPTDKEGDGNPEWNHGMQFDLKGILFHDCGHIFVHFELKHEGVMFGDKTIGEV 102 (318)
Q Consensus 23 gk~DPYV~VsL~~~~p~~~~~~~~k~KTkv~k~~g~NPvWNEtf~F~v~~~~l~d~~~~~L~feV~d~d~~~~Dd~IG~a 102 (318)
.+.|.|++..+....... .--.+|.-..- +..=.|||=+.|.+.-..|. ....|.+.+|+.+.-+.-.|+|..
T Consensus 45 ~~~~l~~~c~v~~~~~~~----~lP~~ts~~~~-~~~~~wnewLtlpvky~dLt--~~a~l~itiW~~n~~~~~~~vg~~ 117 (843)
T KOG0906|consen 45 TSSDLYVTCQVFAEGKPF----ALPVRTSYKAF-SKRINWNEWLTLPVKYSDLT--RNAQLAITIWDVNGPKKAVFVGGT 117 (843)
T ss_pred cchhhhheeeeeccCCcc----cCCcccccccc-CCccchhhhhcccccccccc--ccceEEEEEEecCCCceeeeccce
Confidence 457888888776431100 00122221111 12234999877777555443 357899999997655556688887
Q ss_pred EEeCc
Q 036009 103 RVPIK 107 (318)
Q Consensus 103 ~VpLs 107 (318)
++.|-
T Consensus 118 t~~lf 122 (843)
T KOG0906|consen 118 TVSLF 122 (843)
T ss_pred EEEee
Confidence 77654
No 180
>PRK10301 hypothetical protein; Provisional
Probab=21.29 E-value=4.9e+02 Score=21.80 Aligned_cols=35 Identities=40% Similarity=0.565 Sum_probs=24.2
Q ss_pred EEEeCcc-cccccCceeEEEEEEEeCCCCC-cceEEEEEEE
Q 036009 102 VRVPIKD-LISEFNGVVRFVDYEVRNPDGK-PNGVLTFSYK 140 (318)
Q Consensus 102 a~VpLsd-Ll~~~~g~~~~~sy~Lr~~sGk-~~G~L~ls~k 140 (318)
+.++|.. |..+ ...+.+++.+.||. ..|.+.|+++
T Consensus 88 ~~v~l~~~L~~G----~YtV~Wrvvs~DGH~~~G~~~F~V~ 124 (124)
T PRK10301 88 LIVPLADSLKPG----TYTVDWHVVSVDGHKTKGHYTFSVK 124 (124)
T ss_pred EEEECCCCCCCc----cEEEEEEEEecCCCccCCeEEEEEC
Confidence 4667754 3322 35677888888887 5899999874
No 181
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=20.57 E-value=1.1e+02 Score=31.10 Aligned_cols=43 Identities=9% Similarity=0.193 Sum_probs=28.5
Q ss_pred EEEEEEEeCcccccccCceeEEEEEEEeCCCCCc--ceEEEEEEEEee
Q 036009 98 TIGEVRVPIKDLISEFNGVVRFVDYEVRNPDGKP--NGVLTFSYKVNG 143 (318)
Q Consensus 98 ~IG~a~VpLsdLl~~~~g~~~~~sy~Lr~~sGk~--~G~L~ls~kf~~ 143 (318)
+||.+.|++..+++... ....||++.+.+.+. .|.| |.+++..
T Consensus 1 ~~G~v~i~~~~~~~~~~--~~e~w~~i~~~~~~~~~~~~l-lk~~~~~ 45 (395)
T cd05137 1 LVGRIDITLEMILDRGL--DKETWLPIFDVDNKSVGEGLI-IKVSSEE 45 (395)
T ss_pred CeeEEEeehhhhccCCC--CceeeeccccCCCCCcCcceE-EEEEeee
Confidence 48999999999665432 245899999865443 4555 4555543
No 182
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=20.05 E-value=1.9e+02 Score=30.51 Aligned_cols=8 Identities=50% Similarity=1.124 Sum_probs=3.7
Q ss_pred CCCCCCCC
Q 036009 217 SPGTPHVP 224 (318)
Q Consensus 217 ~~~~~~~~ 224 (318)
.||..+|+
T Consensus 390 ~Pgr~aPp 397 (569)
T KOG3671|consen 390 PPGRPAPP 397 (569)
T ss_pred CCCCCCCC
Confidence 44544444
Done!