BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036010
         (155 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KRU|A Chain A, Crystal Structure Of The Thermostable Old Yellow Enzyme
           From Thermoanaerobacter Pseudethanolicus E39
 pdb|3KRU|B Chain B, Crystal Structure Of The Thermostable Old Yellow Enzyme
           From Thermoanaerobacter Pseudethanolicus E39
 pdb|3KRU|C Chain C, Crystal Structure Of The Thermostable Old Yellow Enzyme
           From Thermoanaerobacter Pseudethanolicus E39
 pdb|3KRU|D Chain D, Crystal Structure Of The Thermostable Old Yellow Enzyme
           From Thermoanaerobacter Pseudethanolicus E39
          Length = 343

 Score = 26.9 bits (58), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 5/43 (11%)

Query: 39  IRDNI-LVNFSECGL----ASLLGSFQVKYVNPITKLCIIKAS 76
           I+D + L++ S  GL     +L   +QVKY   I K C IK S
Sbjct: 239 IKDKVDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRCNIKTS 281


>pdb|3KRZ|A Chain A, Crystal Structure Of The Thermostable Nadh4-Bound Old
           Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
           E39
 pdb|3KRZ|B Chain B, Crystal Structure Of The Thermostable Nadh4-Bound Old
           Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
           E39
 pdb|3KRZ|C Chain C, Crystal Structure Of The Thermostable Nadh4-Bound Old
           Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
           E39
 pdb|3KRZ|D Chain D, Crystal Structure Of The Thermostable Nadh4-Bound Old
           Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
           E39
          Length = 337

 Score = 26.9 bits (58), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 5/43 (11%)

Query: 39  IRDNI-LVNFSECGL----ASLLGSFQVKYVNPITKLCIIKAS 76
           I+D + L++ S  GL     +L   +QVKY   I K C IK S
Sbjct: 239 IKDKVDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRCNIKTS 281


>pdb|3FBG|A Chain A, Crystal Structure Of A Putative Arginate Lyase From
           Staphylococcus Haemolyticus
 pdb|3FBG|B Chain B, Crystal Structure Of A Putative Arginate Lyase From
           Staphylococcus Haemolyticus
          Length = 346

 Score = 26.6 bits (57), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 8/93 (8%)

Query: 20  KELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPI-TKLCIIKASME 78
           K +  + P  L+  N+ K       ++  E  +  +L   Q   VNP+ TK  ++  S  
Sbjct: 4   KAIGFEQPFKLSDGNLFKTFN----LDIPEPKVHEILVKIQSISVNPVDTKQRLMDVSKA 59

Query: 79  DFQKVWSAITMVRSIGNCLVLFNVLDL---SGS 108
                + AI +V S+GN + +FN  D+   SGS
Sbjct: 60  PRVLGFDAIGVVESVGNEVTMFNQGDIVYYSGS 92


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,162,572
Number of Sequences: 62578
Number of extensions: 142189
Number of successful extensions: 411
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 411
Number of HSP's gapped (non-prelim): 4
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)