BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036010
(155 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6AWV1|POP5_ARATH Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis
thaliana GN=EMB1687 PE=2 SV=1
Length = 151
Score = 188 bits (478), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 93/154 (60%), Positives = 121/154 (78%), Gaps = 5/154 (3%)
Query: 2 IVGFKNRYMVVEVFLDPDKELPMDD-PVILTQFNVSKAIRDNILVNFSECGLASLLGSFQ 60
+VGFKNRYM++EVFLDPDK+L + P+ILTQFN+SKAI+D+ILVNF ECGL S LGSFQ
Sbjct: 1 MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60
Query: 61 VKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKRE 120
VKYVNPITKLCI+++S E+ ++VW AIT+V+SIGNC V+ N+LD+SG IRAC++ ALK +
Sbjct: 61 VKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCD 120
Query: 121 EVIFEHYKLAVGARFSADVTQHMDNCLEKIKILE 154
+ FE S + + M+ LEKIK+LE
Sbjct: 121 KEKFEQ----CSKSLSEEEIRQMNTSLEKIKLLE 150
>sp|Q9UU90|POP5_SCHPO Ribonucleases P/MRP protein subunit POP5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC830.09c PE=3 SV=1
Length = 139
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 69/123 (56%), Gaps = 6/123 (4%)
Query: 2 IVGFKNRYMVVEVFLDPDKELPMDDPVI-----LTQFNVSKAIRDNILVNFSECGLASLL 56
+V FK+RY++ EV KE D P I +T ++SK IR + NF + G+ +
Sbjct: 1 MVRFKSRYLLFEVLYPEAKEF-FDYPTIPSDSSITTSSLSKIIRTMVAENFGDVGIGKVA 59
Query: 57 GSFQVKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAA 116
S VKY +P T I++ S + F+ W+A+ ++R + V+ V+ +SG+I+ + AA
Sbjct: 60 SSLTVKYFSPNTSTGILRVSRQHFRLAWAALVLIRELYGKPVIIRVVRVSGTIKKAELAA 119
Query: 117 LKR 119
++R
Sbjct: 120 IER 122
>sp|Q54EP3|POP5_DICDI Probable ribonuclease P/MRP protein subunit POP5 OS=Dictyostelium
discoideum GN=pop5 PE=3 SV=1
Length = 171
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 2 IVGFKNRYMVVEV-FLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQ 60
+V KNRY++ EV + D +K + D + QF +S +++ + E + + +
Sbjct: 1 MVRLKNRYLMTEVIWHDNEKSTQLSDSWLF-QF-ISNEVKEKL----GELTYEAFKKTLK 54
Query: 61 VKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALK 118
+ YVNP T + II+ S E ++ +W+A+T++ S + F ++ + GSIR C+ AA+K
Sbjct: 55 IIYVNPDTNIFIIRVSFEYYKSLWTALTLITSYYGVPIYFRMVHVGGSIRLCQKAAIK 112
>sp|Q969H6|POP5_HUMAN Ribonuclease P/MRP protein subunit POP5 OS=Homo sapiens GN=POP5
PE=1 SV=1
Length = 163
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 15/119 (12%)
Query: 2 IVGFKNRYMVVE-VFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQ 60
+V FK+RY++ E V DP L +DD V+ S +RD I G A+ F
Sbjct: 1 MVRFKHRYLLCELVSDDPRCRLSLDDRVL------SSLVRDTIARVHGTFGAAACSIGFA 54
Query: 61 VKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGN------CLVLFNVLDLSGSIRACK 113
V+Y+N T + +++ E +Q VWSA+ + + N C FN L + G+IR C+
Sbjct: 55 VRYLNAYTGIVLLRCRKEFYQLVWSALPFITYLENKGHRYPC--FFNTLHVGGTIRTCQ 111
>sp|Q1JQ92|POP5_BOVIN Ribonuclease P/MRP protein subunit POP5 OS=Bos taurus GN=POP5 PE=2
SV=1
Length = 170
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 15/119 (12%)
Query: 2 IVGFKNRYMVVEVFLD-PDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQ 60
+V FK+RY++ EV D P L ++D V+ T +RD I G A+ F
Sbjct: 1 MVRFKHRYLLCEVVSDDPRCRLTLEDRVLGT------LVRDTIARVHGTFGAAACSIGFA 54
Query: 61 VKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGN------CLVLFNVLDLSGSIRACK 113
V+Y+N T + +++ E ++ VWSA+ + S+ N C + N L + G+IR C+
Sbjct: 55 VRYLNAYTGIVLLRCRKEFYRLVWSALPFITSLENKGHRYPCFL--NTLHVGGTIRTCQ 111
>sp|Q9DB28|POP5_MOUSE Ribonuclease P/MRP protein subunit POP5 OS=Mus musculus GN=Pop5
PE=2 SV=1
Length = 169
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Query: 2 IVGFKNRYMVVE-VFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQ 60
+V FK+RY++ E V D L +DD V+ +RD I G A+ F
Sbjct: 1 MVRFKHRYLLCELVSEDARCRLSLDDRVL------GGLVRDTIARVHGAFGAAACSVGFA 54
Query: 61 VKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGN------CLVLFNVLDLSGSIRACKN 114
V+Y+N T + +++ + +Q VWSA+ + + N C FN L + G+IR C+
Sbjct: 55 VRYLNAYTGVVLLRCRKDFYQLVWSALPFITYLENKGHRYPC--FFNTLHVGGTIRTCQK 112
>sp|P28005|POP5_YEAST Ribonucleases P/MRP protein subunit POP5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=POP5 PE=1
SV=1
Length = 173
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 15/150 (10%)
Query: 2 IVGFKNRYMVVEVFLDPD----KELPMDDPVILTQFNVSKA----------IRDNILVNF 47
+V K+RY++ E+ P +E ++L+ S A IR ++ +N
Sbjct: 1 MVRLKSRYILFEIIFPPTDTNVEESVSKADILLSHHRASPADVSIKSILQEIRRSLSLNL 60
Query: 48 SECGLASLLGSFQVKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNC-LVLFNVLDLS 106
+ G A Q+KY + T II+ ED V A+ ++ IG+ ++ N + +S
Sbjct: 61 GDYGSAKCNSLLQLKYFSNKTSTGIIRCHREDCDLVIMALMLMSKIGDVDGLIVNPVKVS 120
Query: 107 GSIRACKNAALKREEVIFEHYKLAVGARFS 136
G+I+ + A++R I K + + S
Sbjct: 121 GTIKKIEQFAMRRNSKILNIIKCSQSSHLS 150
>sp|Q5BJI6|POP5_DANRE Ribonuclease P/MRP protein subunit POP5 OS=Danio rerio GN=pop5 PE=2
SV=1
Length = 169
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 2 IVGFKNRYMVVEVFLDPDKELPM-DDPVILTQFNVSKAIRDNILVNFSECGLASL---LG 57
+V FK+RY++ E+ + L + +D V V +A+R + + G A LG
Sbjct: 1 MVRFKSRYLLCELCVSEPSSLHLFEDKV------VYQALRGAVNRAHGDYGAAIFNITLG 54
Query: 58 SFQVKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGN----CLVLFNVLDLSGSIRACK 113
VKY+N T + +I+ ++ VWS++ + + N FN + + G+IR +
Sbjct: 55 VL-VKYLNAHTGVVLIRCRKAHYRLVWSSLPFITFLENRGQKVRCFFNCIHVGGTIRTSQ 113
Query: 114 NAALK 118
+K
Sbjct: 114 KFLIK 118
>sp|O29761|RNP2_ARCFU Ribonuclease P protein component 2 OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rnp2 PE=3 SV=2
Length = 109
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 32 QFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDFQKVWSAITMVR 91
+ ++S+A+ + +L F EC AS +++ + + I++ E KV A+T++
Sbjct: 27 ERSLSRALSEKMLSLFGECFAAS---GLRLEAFD--GERGIVRCYREALDKVMVALTLMT 81
Query: 92 SIGNCLVLFNVLDLSGSIRACKNAALK 118
+G V+ L +SG+I+ CK L+
Sbjct: 82 HVGGVRVIPLTLGVSGTIKRCKRKYLE 108
>sp|Q89A80|RL6_BUCBP 50S ribosomal protein L6 OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=rplF PE=3 SV=1
Length = 179
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 67 ITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLS-------GSIRACKNAALKR 119
I ++ I+K S + +++ +V+S+ +CLV + ++ S G+ R+ N+ +
Sbjct: 20 IGQMVIVKGSKGELKRLIHDSVLVKSVKSCLVFSSRINSSVKGWAQAGTARSLVNSMIHG 79
Query: 120 EEV-IFEHYKL-AVGARFSADVTQHMDNCLEKIKILEY 155
V F+ KL VG R S + +++++ L I+EY
Sbjct: 80 VTVGFFKKLKLFGVGYRISINSSKNLNMSLGYSHIIEY 117
>sp|Q7VFF1|HEM1_HELHP Glutamyl-tRNA reductase OS=Helicobacter hepaticus (strain ATCC
51449 / 3B1) GN=hemA PE=3 SV=1
Length = 440
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 52 LASLLGSFQVKYVNPITKLCIIKASM---EDFQKVWSAITMVRSIGNC----LVLFNVLD 104
L LLG ++V + CII++ M Q+ W + + R I N L +F V D
Sbjct: 247 LEQLLGQYEVLFSATSAPNCIIQSKMVQVSQKQRWWFDLALPRDIENIQMENLHIFCVDD 306
Query: 105 LSGSIRACKNA---ALKREEVIFEHY 127
L ++ KNA + K+ + I E Y
Sbjct: 307 LEEIVQEHKNAREDSAKKAQKILERY 332
>sp|P50507|RP32_RHIRD RNA polymerase sigma-32 factor OS=Rhizobium radiobacter GN=rpoH
PE=3 SV=1
Length = 300
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 70 LCIIKASMEDF-QKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKREEV 122
+ IKAS++++ + WS + M + + FN+ L G I+A + LK E V
Sbjct: 106 MWWIKASIQEYILRSWSLVKMGTTANQKRLFFNLRRLKGRIQAIDDGDLKPEHV 159
>sp|Q32LL9|CENPN_BOVIN Centromere protein N OS=Bos taurus GN=CENPN PE=2 SV=1
Length = 339
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 64 VNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKREEVI 123
+N L II QK+W M ++ G+ + LF++ S + ALK V
Sbjct: 63 LNDAAHLDIIYTQFHRHQKIWDVFQMSKAPGDDIDLFDMEQFKSSFKKILQRALKNVTVS 122
Query: 124 F 124
F
Sbjct: 123 F 123
>sp|A3M0F4|CTU2_PICST Cytoplasmic tRNA 2-thiolation protein 2 OS=Scheffersomyces stipitis
(strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL
Y-11545) GN=NCS2 PE=3 SV=2
Length = 448
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 33 FNVSKAIRDNILVNFSECGLASLLGSFQVKY-VNPITKLCIIKASMEDFQKVWSAITMVR 91
F + +A+ +L+N +A L Q KY V + KLC K+SMED V ++R
Sbjct: 151 FLIDRAMIQKVLLNKDFTAIAQRLSDEQNKYTVADMLKLCPNKSSMEDLLTVIYEELILR 210
Query: 92 S--IGNC 96
+ I NC
Sbjct: 211 TAFIENC 217
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,707,031
Number of Sequences: 539616
Number of extensions: 1838041
Number of successful extensions: 5158
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5142
Number of HSP's gapped (non-prelim): 16
length of query: 155
length of database: 191,569,459
effective HSP length: 107
effective length of query: 48
effective length of database: 133,830,547
effective search space: 6423866256
effective search space used: 6423866256
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)