Query 036010
Match_columns 155
No_of_seqs 101 out of 332
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:33:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036010.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036010hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4639 RNase P/RNase MRP subu 100.0 7.7E-44 1.7E-48 267.4 16.2 144 2-153 1-144 (154)
2 PRK03717 ribonuclease P protei 100.0 4.3E-36 9.2E-41 221.4 13.1 103 3-117 12-114 (120)
3 PF01900 RNase_P_Rpp14: Rpp14/ 100.0 4.2E-35 9.2E-40 210.4 10.9 107 8-119 1-107 (107)
4 COG1369 POP5 RNase P/RNase MRP 100.0 3.8E-29 8.2E-34 183.9 11.8 106 3-120 12-117 (124)
5 PF14164 YqzH: YqzH-like prote 73.3 8.2 0.00018 25.5 4.1 40 113-152 3-43 (64)
6 PF08777 RRM_3: RNA binding mo 68.5 28 0.00061 24.7 6.4 58 40-103 15-77 (105)
7 TIGR03706 exo_poly_only exopol 43.3 23 0.00051 29.4 2.8 19 101-119 199-217 (300)
8 PF10057 DUF2294: Uncharacteri 36.3 77 0.0017 22.8 4.3 49 101-153 40-90 (118)
9 cd07091 ALDH_F1-2_Ald2-like AL 34.7 1.6E+02 0.0035 25.9 6.9 89 60-148 20-110 (476)
10 PF06102 DUF947: Domain of unk 33.2 1E+02 0.0022 23.8 4.8 40 113-152 54-93 (168)
11 PF08278 DnaG_DnaB_bind: DNA p 31.5 1.2E+02 0.0026 21.4 4.7 39 105-146 87-126 (127)
12 PF00564 PB1: PB1 domain; Int 30.4 1.5E+02 0.0033 19.0 5.2 59 35-102 23-81 (84)
13 PF13490 zf-HC2: Putative zinc 30.1 1E+02 0.0022 16.9 3.4 24 125-148 6-29 (36)
14 PF10892 DUF2688: Protein of u 30.0 1.2E+02 0.0026 19.6 3.8 43 104-147 15-57 (60)
15 PLN00203 glutamyl-tRNA reducta 30.0 1.2E+02 0.0027 27.5 5.5 53 99-151 424-476 (519)
16 PF05265 DUF723: Protein of un 29.8 1.4E+02 0.003 19.4 4.2 32 40-80 9-40 (60)
17 PRK09407 gabD2 succinic semial 28.3 2.6E+02 0.0056 25.1 7.2 78 60-137 33-110 (524)
18 PHA00649 hypothetical protein 28.0 1.9E+02 0.0041 19.5 4.7 37 110-149 9-45 (83)
19 cd02410 archeal_CPSF_KH The ar 26.5 1.9E+02 0.0041 22.1 5.1 69 59-127 68-140 (145)
20 cd07089 ALDH_CddD-AldA-like Rh 25.6 1.4E+02 0.003 26.2 4.9 85 64-148 2-87 (459)
21 PRK04031 DNA primase; Provisio 25.5 4.1E+02 0.009 23.7 7.7 66 82-149 83-149 (408)
22 TIGR03216 OH_muco_semi_DH 2-hy 25.2 1.9E+02 0.0041 25.6 5.7 80 60-139 15-95 (481)
23 PRK10854 exopolyphosphatase; P 25.1 1.8E+02 0.0039 26.2 5.6 18 101-118 212-229 (513)
24 PF11429 Colicin_D: Colicin D; 24.7 77 0.0017 22.3 2.5 28 46-77 42-69 (92)
25 PF10163 EnY2: Transcription f 23.5 2.4E+02 0.0053 19.0 5.4 31 122-152 56-86 (86)
26 PF05814 DUF843: Baculovirus p 23.0 82 0.0018 21.8 2.3 23 130-152 56-78 (83)
27 cd06396 PB1_NBR1 The PB1 domai 22.9 2.6E+02 0.0056 19.1 5.0 43 37-86 25-67 (81)
28 PF01133 ER: Enhancer of rudim 22.6 1.8E+02 0.004 20.9 4.1 45 107-153 23-67 (102)
29 PRK00034 gatC aspartyl/glutamy 22.3 2.1E+02 0.0046 19.3 4.4 32 121-152 5-36 (95)
30 PF00745 GlutR_dimer: Glutamyl 20.4 91 0.002 21.0 2.2 44 104-149 22-65 (101)
31 PF04036 DUF372: Domain of unk 20.1 2E+02 0.0043 17.0 3.2 35 111-149 3-37 (38)
32 PRK09406 gabD1 succinic semial 20.0 1.8E+02 0.0038 25.7 4.4 88 61-149 3-90 (457)
No 1
>KOG4639 consensus RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.7e-44 Score=267.42 Aligned_cols=144 Identities=24% Similarity=0.450 Sum_probs=136.6
Q ss_pred ccccCCcEEEEEEEeCCCCCCCCCCCCccCHHHHHHHHHHHHHHhcchhhhhhhcCceeEEEEcCCCcEEEEEeCCccHH
Q 036010 2 IVGFKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDFQ 81 (155)
Q Consensus 2 MVR~K~RYil~ei~~~~~~~~~~~~~~~l~~~~i~~aIr~~v~~lfGd~G~~~~~~~l~V~y~~~~t~~~IIRc~r~~~~ 81 (155)
|||+|||||+||+++++++ .+.+++...|.+.+|..+.++|||||+|.+.++|.|+|+|+.|+.+||||.+++++
T Consensus 1 MVRiK~RYilvel~~~~p~-----~~~~~~~siL~~iir~~v~~~~Gd~G~a~~~s~l~VkYl~~~T~v~ilRc~~~~~k 75 (154)
T KOG4639|consen 1 MVRIKNRYILVELLFPDPP-----PDLSLKDSILQSIIRSRVSENYGDFGLAKVKSLLSVKYLNENTSVAILRCAREGCK 75 (154)
T ss_pred CceeeeeEEEEEEecCCCC-----CCCCcchHHHHHHHHHHHHHHhhhHHHHHhhcceEEEEeCCCCcEEEEEEccccch
Confidence 9999999999999998663 34568888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhCCeEEEEEEEeeechHHHHHHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhc
Q 036010 82 KVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKREEVIFEHYKLAVGARFSADVTQHMDNCLEKIKIL 153 (155)
Q Consensus 82 ~v~aaL~li~~i~~~~~~~~Vl~vSGTIr~~~k~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (155)
.+|+|||+|++++|.||.|++++||||||+|++++++++++.++.. .|++.+++|+++++++++++...
T Consensus 76 ~v~~aLplI~~i~d~~~~~~tl~Vggtik~cekfiik~nr~el~~~---l~~~t~~~~r~~~~~~v~~~~~~ 144 (154)
T KOG4639|consen 76 LVWAALPLITKIGDVPCIFRTLFVGGTIKKCEKFIIKYNRSELHRI---LGKCTSTEERDQLFEAVHQICGQ 144 (154)
T ss_pred hHHHHHhHHHhhcCcceEEEEEEEhhhHHHHHHHHHHHhHHHHHHH---HhhcCchhhhhhHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999888 99999999999999999998754
No 2
>PRK03717 ribonuclease P protein component 2; Provisional
Probab=100.00 E-value=4.3e-36 Score=221.41 Aligned_cols=103 Identities=24% Similarity=0.309 Sum_probs=96.1
Q ss_pred cccCCcEEEEEEEeCCCCCCCCCCCCccCHHHHHHHHHHHHHHhcchhhhhhhcCceeEEEEcCCCcEEEEEeCCccHHH
Q 036010 3 VGFKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDFQK 82 (155)
Q Consensus 3 VR~K~RYil~ei~~~~~~~~~~~~~~~l~~~~i~~aIr~~v~~lfGd~G~~~~~~~l~V~y~~~~t~~~IIRc~r~~~~~ 82 (155)
||+||||++|||+++++ +++++|.++||++++++|||+|+|.+. ++++|||+.|+.|||||+|++++.
T Consensus 12 lR~K~RYi~~ei~~~~~----------~~~~~l~~~Ir~av~~~fGd~G~~~~~--~~li~f~~~t~~gIlRc~R~~~~~ 79 (120)
T PRK03717 12 LRDKNRYIAFQVIGERP----------FTKDEIKKAIWEASLSTLGELGTARAK--PWFIKFDEKTQTGIVRCDRKHVEE 79 (120)
T ss_pred ccccceEEEEEEEeCCC----------CCHHHHHHHHHHHHHHHcChhhhcccc--ceEEEEeCCCCEEEEEcCchhHHH
Confidence 79999999999998653 789999999999999999999999886 556799999999999999999999
Q ss_pred HHHHHHhhhhhCCeEEEEEEEeeechHHHHHHHHH
Q 036010 83 VWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAAL 117 (155)
Q Consensus 83 v~aaL~li~~i~~~~~~~~Vl~vSGTIr~~~k~~i 117 (155)
+|+||++|++++|.||.|+|++||||||+|+++++
T Consensus 80 v~aAL~li~~i~~~~v~ir~l~vSGTIk~~~~k~l 114 (120)
T PRK03717 80 LRFALTLVTEINGSKAIIRTLGVSGTIKRLKRKFL 114 (120)
T ss_pred HHHHHHHHHhCCCeeEEEEEeeccHHHHHHHHHhh
Confidence 99999999999999999999999999999975554
No 3
>PF01900 RNase_P_Rpp14: Rpp14/Pop5 family; InterPro: IPR002759 This family contains proteins found in some eukaryotes and archaebacteria that are related to yeast ribonuclease P. This enzyme is essential for tRNA processing generating 5'-termini of mature tRNA molecules []. tRNA processing enzyme ribonuclease P (RNase P) consists of an RNA molecule associated with at least eight protein subunits, hPop1, Rpp14, Rpp20, Rpp25, Rpp29, Rpp30, Rpp38, and Rpp40 [].; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 2CZV_D 2AV5_B.
Probab=100.00 E-value=4.2e-35 Score=210.37 Aligned_cols=107 Identities=38% Similarity=0.636 Sum_probs=90.5
Q ss_pred cEEEEEEEeCCCCCCCCCCCCccCHHHHHHHHHHHHHHhcchhhhhhhcCceeEEEEcCCCcEEEEEeCCccHHHHHHHH
Q 036010 8 RYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDFQKVWSAI 87 (155)
Q Consensus 8 RYil~ei~~~~~~~~~~~~~~~l~~~~i~~aIr~~v~~lfGd~G~~~~~~~l~V~y~~~~t~~~IIRc~r~~~~~v~aaL 87 (155)
|||+||+.++|+. ++..+++.+|.++|++++.++|||+|+|.+.++|.|+||||.|+.|||||+|++++.+|+||
T Consensus 1 RYi~~~i~~~~~~-----~~~~~~~~~l~~~I~~a~~~l~G~~G~~~~~~~l~v~~~~~~t~~~IiR~~r~~~~~v~~aL 75 (107)
T PF01900_consen 1 RYIVFEIISEDPS-----DPAELSPSDLKKAIREAVKELFGDFGAAAISPSLQVKYFNPKTGIGIIRCRREYYKKVWSAL 75 (107)
T ss_dssp EEEEEEEEES----------S---HHHHHHHHHHHHHHHCHHHHHHHH--EEE--EEETTTTEEEEEEEGGGHHHHHHHH
T ss_pred CEEEEEEEEcccc-----ccCcCCHHHHHHHHHHHHHHHcChhhhhhcccccceeeEcCCCCEEEEEEcchhhhHHHHHH
Confidence 9999999998763 23458999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhCCeEEEEEEEeeechHHHHHHHHHhh
Q 036010 88 TMVRSIGNCLVLFNVLDLSGSIRACKNAALKR 119 (155)
Q Consensus 88 ~li~~i~~~~~~~~Vl~vSGTIr~~~k~~i~~ 119 (155)
|++++++|.||.|+|++||||||+|+|++++|
T Consensus 76 ~~i~~i~~~~~~~~vl~vSGTir~~~k~~i~~ 107 (107)
T PF01900_consen 76 TLITSINGRPCSIRVLHVSGTIRSCQKFIIKY 107 (107)
T ss_dssp HT--EETTEEEEEEEEEEESSHHHHHHHCTC-
T ss_pred HHHhccCCceEEEEEEEEChhHHHHHHHHhcC
Confidence 99999999999999999999999999999875
No 4
>COG1369 POP5 RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.8e-29 Score=183.86 Aligned_cols=106 Identities=24% Similarity=0.330 Sum_probs=97.7
Q ss_pred cccCCcEEEEEEEeCCCCCCCCCCCCccCHHHHHHHHHHHHHHhcchhhhhhhcCceeEEEEcCCCcEEEEEeCCccHHH
Q 036010 3 VGFKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDFQK 82 (155)
Q Consensus 3 VR~K~RYil~ei~~~~~~~~~~~~~~~l~~~~i~~aIr~~v~~lfGd~G~~~~~~~l~V~y~~~~t~~~IIRc~r~~~~~ 82 (155)
+|.++|||+|+++++++ ++..++.++||.++.++|||+|.|.+. ++|.+|++.|+.|||||.|++++.
T Consensus 12 lr~~kRYiaf~vise~~----------i~~~~l~~~I~~s~l~llG~~gta~~~--~~lv~~~~~t~~GIvrc~R~~~~~ 79 (124)
T COG1369 12 LRPRKRYIAFEVISEEE----------ITRGELVRLIRRSLLSLLGDVGTAKAN--PRLVKYYFSTGTGIVRCRREYVDL 79 (124)
T ss_pred cCccceEEEEEEecccc----------CChhHHHHHHHHHHHHHcCcccccccc--eeEEEEeccCCceEEEEechhHHH
Confidence 68999999999998743 789999999999999999999999885 677788777999999999999999
Q ss_pred HHHHHHhhhhhCCeEEEEEEEeeechHHHHHHHHHhhh
Q 036010 83 VWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKRE 120 (155)
Q Consensus 83 v~aaL~li~~i~~~~~~~~Vl~vSGTIr~~~k~~i~~~ 120 (155)
+++||+++++++|.|+.++|++||||||+|++++++-+
T Consensus 80 v~aAL~l~~~~~g~rv~I~~lgvSGTIKka~~~~l~~~ 117 (124)
T COG1369 80 VRAALMLAREVNGKRVIIVVLGVSGTIKKAKRKFLRRN 117 (124)
T ss_pred HHHHHHHHHHhCCceEEEEEeeccccHHHHHHHHhccC
Confidence 99999999999999999999999999999998777644
No 5
>PF14164 YqzH: YqzH-like protein
Probab=73.30 E-value=8.2 Score=25.51 Aligned_cols=40 Identities=10% Similarity=0.008 Sum_probs=31.3
Q ss_pred HHHHHhhhHHHHHHHHHH-hccCCCHHHHHHHHHHHHHHhh
Q 036010 113 KNAALKREEVIFEHYKLA-VGARFSADVTQHMDNCLEKIKI 152 (155)
Q Consensus 113 ~k~~i~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 152 (155)
+|++.+.-++.|.+++-. -..++|++|.+++.+++.+..+
T Consensus 3 ek~I~Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~i~~~~~ 43 (64)
T PF14164_consen 3 EKLIEKMIINCLRQYGYDVECMPLSDEEWEELCKHIQERKN 43 (64)
T ss_pred HHHHHHHHHHHHHHhCCcccCCCCCHHHHHHHHHHHHHHHh
Confidence 577788888888888533 2567899999999999988764
No 6
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=68.48 E-value=28 Score=24.69 Aligned_cols=58 Identities=19% Similarity=0.144 Sum_probs=32.2
Q ss_pred HHHHHHhcchhhhhhhcCceeEEEEcCCCcEEEEEeCCc-cHHHHHHHHHhh----hhhCCeEEEEEEE
Q 036010 40 RDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASME-DFQKVWSAITMV----RSIGNCLVLFNVL 103 (155)
Q Consensus 40 r~~v~~lfGd~G~~~~~~~l~V~y~~~~t~~~IIRc~r~-~~~~v~aaL~li----~~i~~~~~~~~Vl 103 (155)
|+.+...|.++| . +.=+.|......|.||+.-. ..+.++.++... ..+++.++.+++|
T Consensus 15 re~iK~~f~~~g--~----V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 15 REDIKEAFSQFG--E----VAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp HHHHHHHT-SS--------EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred HHHHHHHHHhcC--C----cceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 566666777766 1 23345556677899999987 456777777665 3356667766665
No 7
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=43.25 E-value=23 Score=29.36 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=14.8
Q ss_pred EEEeeechHHHHHHHHHhh
Q 036010 101 NVLDLSGSIRACKNAALKR 119 (155)
Q Consensus 101 ~Vl~vSGTIr~~~k~~i~~ 119 (155)
+++.+|||++..-+.....
T Consensus 199 ~lig~gGt~~~la~~~~~~ 217 (300)
T TIGR03706 199 PLYGVGGTWRALARIHQAQ 217 (300)
T ss_pred EEEEehHHHHHHHHHHHhc
Confidence 5899999999887666443
No 8
>PF10057 DUF2294: Uncharacterized conserved protein (DUF2294); InterPro: IPR018745 This domain of unknown function is found in a family of hypothetical bacterial proteins with no known function. It is also found at the C terminus of proteins provisionally annotated as response regulators.
Probab=36.34 E-value=77 Score=22.75 Aligned_cols=49 Identities=8% Similarity=0.175 Sum_probs=35.4
Q ss_pred EEEeeechHHHHHHHHHhh--hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhc
Q 036010 101 NVLDLSGSIRACKNAALKR--EEVIFEHYKLAVGARFSADVTQHMDNCLEKIKIL 153 (155)
Q Consensus 101 ~Vl~vSGTIr~~~k~~i~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (155)
-+++..|.+-.+++++++. ..+.+++.|...-... ++++.+.++++++.
T Consensus 40 iiv~l~g~LTp~Ek~L~~~~~g~~lv~~~R~~l~~~~----~~~l~~~ie~i~g~ 90 (118)
T PF10057_consen 40 IIVRLEGFLTPAEKFLAETEEGRELVKQVRTSLIESL----KPELKEMIEEILGV 90 (118)
T ss_pred EEEEEECCCCHHHHHHHhCcchHHHHHHHHHHHHHHH----HHHHHHHHHHHhCC
Confidence 4677889999999999998 6677888876653333 45666777776653
No 9
>cd07091 ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins. ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the co
Probab=34.70 E-value=1.6e+02 Score=25.86 Aligned_cols=89 Identities=11% Similarity=0.081 Sum_probs=53.3
Q ss_pred eEEEEcCCCcEEEEEeCCccHHHHHHHHHhhhhhCCeEE--EEEEEeeechHHHHHHHHHhhhHHHHHHHHHHhccCCCH
Q 036010 60 QVKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLV--LFNVLDLSGSIRACKNAALKREEVIFEHYKLAVGARFSA 137 (155)
Q Consensus 60 ~V~y~~~~t~~~IIRc~r~~~~~v~aaL~li~~i~~~~~--~~~Vl~vSGTIr~~~k~~i~~~~~~l~~~~~~~~~~~~~ 137 (155)
....+||.|+..|-+++....+.+..++...+.-...-. .+..-.-..-++++.+.+..+..+..+.+....|.+..+
T Consensus 20 ~~~~~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~ 99 (476)
T cd07091 20 TFPTINPATEEVICQVAEADEEDVDAAVKAARAAFETGWWRKMDPRERGRLLNKLADLIERDRDELAALESLDNGKPLEE 99 (476)
T ss_pred eEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHH
Confidence 467789999999999999988888888776665533111 111222233345555556665555555555666777655
Q ss_pred HHHHHHHHHHH
Q 036010 138 DVTQHMDNCLE 148 (155)
Q Consensus 138 ~~~~~~~~~~~ 148 (155)
....|+...+.
T Consensus 100 ~~~~ev~~~~~ 110 (476)
T cd07091 100 SAKGDVALSIK 110 (476)
T ss_pred HHHHHHHHHHH
Confidence 43334444443
No 10
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=33.22 E-value=1e+02 Score=23.79 Aligned_cols=40 Identities=8% Similarity=0.034 Sum_probs=34.4
Q ss_pred HHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhh
Q 036010 113 KNAALKREEVIFEHYKLAVGARFSADVTQHMDNCLEKIKI 152 (155)
Q Consensus 113 ~k~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (155)
=.||-.+....+.+|+..+..+.+++++++++..|..|-+
T Consensus 54 Y~FL~d~r~~E~~~Lk~~lk~~k~~~~~e~lk~~L~~~~~ 93 (168)
T PF06102_consen 54 YGFLDDYREKEIKELKKQLKKTKDPEEREELKRELQRMES 93 (168)
T ss_pred hhhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3678888889999999999999999999999999987754
No 11
>PF08278 DnaG_DnaB_bind: DNA primase DnaG DnaB-binding ; InterPro: IPR013173 Eubacterial DnaG primases interact with several factors to form the replisome. One of these factors is DnaB, a helicase. This domain has been demonstrated to be responsible for the interaction between DnaG and DnaB []. This domain has a multi-helical structure that forms an orthogonal bundle [].; GO: 0003896 DNA primase activity, 0006269 DNA replication, synthesis of RNA primer; PDB: 2HAJ_A 1T3W_B.
Probab=31.50 E-value=1.2e+02 Score=21.41 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=21.8
Q ss_pred eechHHHHHHHHHhhhHHHHHHHHHHhc-cCCCHHHHHHHHHH
Q 036010 105 LSGSIRACKNAALKREEVIFEHYKLAVG-ARFSADVTQHMDNC 146 (155)
Q Consensus 105 vSGTIr~~~k~~i~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~ 146 (155)
..+++.+.++..++. .++.|..-.. ..+|++|++++...
T Consensus 87 f~d~l~~L~~~~~~~---~i~~L~~k~~~~~Lt~eEk~el~~L 126 (127)
T PF08278_consen 87 FQDALARLQEQALER---RIEELKAKPRRGGLTDEEKQELRRL 126 (127)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHTTT---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHhhccCCcCHHHHHHHHHh
Confidence 356666666665444 4444443343 66899999988654
No 12
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=30.40 E-value=1.5e+02 Score=19.05 Aligned_cols=59 Identities=22% Similarity=0.236 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcchhhhhhhcCceeEEEEcCCCcEEEEEeCCccHHHHHHHHHhhhhhCCeEEEEEE
Q 036010 35 VSKAIRDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNV 102 (155)
Q Consensus 35 i~~aIr~~v~~lfGd~G~~~~~~~l~V~y~~~~t~~~IIRc~r~~~~~v~aaL~li~~i~~~~~~~~V 102 (155)
-...+++.+...||.. ...+.+.|-|...-..-|.... .+.-|+......++.+..+.|
T Consensus 23 s~~~L~~~i~~~~~~~-----~~~~~l~Y~D~dgD~V~i~sd~----Dl~~a~~~~~~~~~~~lrl~v 81 (84)
T PF00564_consen 23 SFDDLRSKIREKFGLL-----DEDFQLKYKDEDGDLVTISSDE----DLQEAIEQAKESGSKTLRLFV 81 (84)
T ss_dssp HHHHHHHHHHHHHTTS-----TSSEEEEEEETTSSEEEESSHH----HHHHHHHHHHHCTTSCEEEEE
T ss_pred CHHHHHHHHHHHhCCC-----CccEEEEeeCCCCCEEEeCCHH----HHHHHHHHHHhcCCCcEEEEE
Confidence 4577888888888876 3468999999877666665544 344444444554655666655
No 13
>PF13490 zf-HC2: Putative zinc-finger; PDB: 2Z2S_F 2Q1Z_B 3HUG_T.
Probab=30.13 E-value=1e+02 Score=16.92 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=17.2
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHH
Q 036010 125 EHYKLAVGARFSADVTQHMDNCLE 148 (155)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~ 148 (155)
+.+..+.-..++++++.+++++|.
T Consensus 6 ~~l~~y~dg~L~~~~~~~~~~HL~ 29 (36)
T PF13490_consen 6 ELLSAYLDGELSPEERARLEAHLA 29 (36)
T ss_dssp HHHHHHHCT-S-HHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345566888899999999998874
No 14
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=30.03 E-value=1.2e+02 Score=19.61 Aligned_cols=43 Identities=9% Similarity=0.113 Sum_probs=26.5
Q ss_pred eeechHHHHHHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 036010 104 DLSGSIRACKNAALKREEVIFEHYKLAVGARFSADVTQHMDNCL 147 (155)
Q Consensus 104 ~vSGTIr~~~k~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 147 (155)
+.+-+|+...+-++.-+.-+ ++|..-.|.+++|+|..|+.+..
T Consensus 15 RCGk~i~tl~~SL~Gad~lr-~klG~IC~~CitpEE~~~I~e~~ 57 (60)
T PF10892_consen 15 RCGKSIRTLSRSLIGADDLR-VKLGGICGDCITPEEDREILEAT 57 (60)
T ss_pred hhCccHHHHHHHhhChHHHH-HHHcchhhccCCHHHHHHHHHHH
Confidence 45556666666665543311 23334469999999988776653
No 15
>PLN00203 glutamyl-tRNA reductase
Probab=30.01 E-value=1.2e+02 Score=27.53 Aligned_cols=53 Identities=11% Similarity=0.136 Sum_probs=40.3
Q ss_pred EEEEEeeechHHHHHHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 036010 99 LFNVLDLSGSIRACKNAALKREEVIFEHYKLAVGARFSADVTQHMDNCLEKIK 151 (155)
Q Consensus 99 ~~~Vl~vSGTIr~~~k~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (155)
-++.+.+.++|++.++++.......++++..-++..+++++++.+.+..+.|.
T Consensus 424 w~~~~~~~p~I~~lr~~~~~i~~~Eler~~~kl~~~~~~~~~~~ie~~~~~iv 476 (519)
T PLN00203 424 WRDSLETVPTIKKLRSYAERIRAAELEKCLSKMGDDLTKKQRKAVEDLSRGIV 476 (519)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHH
Confidence 45678899999999999999999999988443332368888887776666554
No 16
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=29.79 E-value=1.4e+02 Score=19.41 Aligned_cols=32 Identities=6% Similarity=0.124 Sum_probs=23.0
Q ss_pred HHHHHHhcchhhhhhhcCceeEEEEcCCCcEEEEEeCCccH
Q 036010 40 RDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDF 80 (155)
Q Consensus 40 r~~v~~lfGd~G~~~~~~~l~V~y~~~~t~~~IIRc~r~~~ 80 (155)
..-+++.||| +.++.|+....-..|||+--..
T Consensus 9 ~~r~~e~Fp~---------~slvef~g~~~PvtI~CP~HG~ 40 (60)
T PF05265_consen 9 ASRFEEKFPH---------YSLVEFSGVATPVTIRCPKHGN 40 (60)
T ss_pred HHHHHHHCCC---------ceEEEEeCCCCceEEECCCCCc
Confidence 3456788998 4567777777778999986443
No 17
>PRK09407 gabD2 succinic semialdehyde dehydrogenase; Reviewed
Probab=28.33 E-value=2.6e+02 Score=25.14 Aligned_cols=78 Identities=13% Similarity=0.126 Sum_probs=46.7
Q ss_pred eEEEEcCCCcEEEEEeCCccHHHHHHHHHhhhhhCCeEEEEEEEeeechHHHHHHHHHhhhHHHHHHHHHHhccCCCH
Q 036010 60 QVKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKREEVIFEHYKLAVGARFSA 137 (155)
Q Consensus 60 ~V~y~~~~t~~~IIRc~r~~~~~v~aaL~li~~i~~~~~~~~Vl~vSGTIr~~~k~~i~~~~~~l~~~~~~~~~~~~~ 137 (155)
....+||.|+.-|-++.....+.+..++...+.-...=...-.-.-..-++++.+.+.++..+..+.+....|.+..+
T Consensus 33 ~~~v~nP~tg~~i~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~iL~~~a~~l~~~~~ela~~~~~e~Gk~~~~ 110 (524)
T PRK09407 33 TREVTAPFTGEPLATVPVSTAADVEAAFARARAAQRAWAATPVRERAAVLLRFHDLVLENREELLDLVQLETGKARRH 110 (524)
T ss_pred EEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHH
Confidence 466789999999999999888888777765554322100000111123345555666665555555555666776643
No 18
>PHA00649 hypothetical protein
Probab=27.96 E-value=1.9e+02 Score=19.55 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=27.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 036010 110 RACKNAALKREEVIFEHYKLAVGARFSADVTQHMDNCLEK 149 (155)
Q Consensus 110 r~~~k~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (155)
..||+++-+-..+.+..| .-..-.|+|.+|+++.++-
T Consensus 9 pacqEAA~rAV~~~~~~L---GVD~~~P~~VEEFr~D~~~ 45 (83)
T PHA00649 9 PACQEAADRAVKKVFAIL---GVDVDVPEQVEEFREDLRF 45 (83)
T ss_pred hHHHHHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHH
Confidence 468999888888888777 4344468888888887763
No 19
>cd02410 archeal_CPSF_KH The archaeal cleavage and polyadenylation specificity factor (CPSF) contains an N-terminal K homology RNA-binding domain (KH). The archeal CPSFs are predicted to be metal-dependent RNases belonging to the beta-CASP family, a subgroup enzymes within the metallo-beta-lactamase fold. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH domains are known to bind single-stranded RNA or DNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=26.52 E-value=1.9e+02 Score=22.08 Aligned_cols=69 Identities=14% Similarity=0.079 Sum_probs=41.5
Q ss_pred eeEEEEcCCCcEEEEEeCCccHHHHHH--HHHh-hhhhCCeEEEEEEEee-echHHHHHHHHHhhhHHHHHHH
Q 036010 59 FQVKYVNPITKLCIIKASMEDFQKVWS--AITM-VRSIGNCLVLFNVLDL-SGSIRACKNAALKREEVIFEHY 127 (155)
Q Consensus 59 l~V~y~~~~t~~~IIRc~r~~~~~v~a--aL~l-i~~i~~~~~~~~Vl~v-SGTIr~~~k~~i~~~~~~l~~~ 127 (155)
++=.|||+.||-.+|...+.....-.. .+-- ..+.+=.|..+|.-=+ |.||...+.++.+...++-+-|
T Consensus 68 i~di~Fd~~tGEV~IeaeKPG~ViGk~g~~~reI~~~tgW~p~vvRtpPi~S~ti~~ir~~l~~~~~eR~~~L 140 (145)
T cd02410 68 ITDIYFDDDTGEVIIEAEKPGLVIGKGGSTLREITRETGWAPKVVRTPPIQSRTVKSIRRFLRREREERKEIL 140 (145)
T ss_pred ceeeEecCCCcEEEEEEcCCeEEEecCchhHHHHHHHhCCeeEEEecCCCCcHHHHHHHHHHHHhHHHHHHHH
Confidence 445899999999999999875532221 1111 1223435554443333 7788888887776555544444
No 20
>cd07089 ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid; and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and also, the Mycobacterium tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence; and other similar sequences, are included in this CD.
Probab=25.65 E-value=1.4e+02 Score=26.24 Aligned_cols=85 Identities=20% Similarity=0.117 Sum_probs=48.7
Q ss_pred EcCCCcEEEEEeCCccHHHHHHHHHhhhhhCCeEE-EEEEEeeechHHHHHHHHHhhhHHHHHHHHHHhccCCCHHHHHH
Q 036010 64 VNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLV-LFNVLDLSGSIRACKNAALKREEVIFEHYKLAVGARFSADVTQH 142 (155)
Q Consensus 64 ~~~~t~~~IIRc~r~~~~~v~aaL~li~~i~~~~~-~~~Vl~vSGTIr~~~k~~i~~~~~~l~~~~~~~~~~~~~~~~~~ 142 (155)
+||.|+.-|-+++....+.+..++..-+.-...-. ..-.-.-.--++++.+.+.++..+..+.+....|.+.++....|
T Consensus 2 ~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~w~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~~~e 81 (459)
T cd07089 2 INPATEEVIGTAPDAGAADVDAAIAAARRAFDTGDWSTDAEERARCLRQLHEALEARKEELRALLVAEVGAPVMTARAMQ 81 (459)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHH
Confidence 58999999999999888888887766655432111 11111112234455555555555545445666788876543334
Q ss_pred HHHHHH
Q 036010 143 MDNCLE 148 (155)
Q Consensus 143 ~~~~~~ 148 (155)
+...+.
T Consensus 82 v~~~i~ 87 (459)
T cd07089 82 VDGPIG 87 (459)
T ss_pred HHHHHH
Confidence 433333
No 21
>PRK04031 DNA primase; Provisional
Probab=25.52 E-value=4.1e+02 Score=23.68 Aligned_cols=66 Identities=14% Similarity=0.290 Sum_probs=42.0
Q ss_pred HHHHHHHhhhhhCCeEEEEEEEeeechHHHH-HHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 036010 82 KVWSAITMVRSIGNCLVLFNVLDLSGSIRAC-KNAALKREEVIFEHYKLAVGARFSADVTQHMDNCLEK 149 (155)
Q Consensus 82 ~v~aaL~li~~i~~~~~~~~Vl~vSGTIr~~-~k~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (155)
.+-|||=.|-++|-+++.|+|..+.- +|.. ++++++.-...|..+... +.+-+.+=.+++.+.+..
T Consensus 83 ilAA~lEtIdRVGPc~A~i~v~~IeD-vR~~Kr~~IveRAkeil~~~~~e-~~~~s~ei~~ev~e~vr~ 149 (408)
T PRK04031 83 ILAAALETIDRVGPCRAKIEVTEIED-VRAEKRKKIVERAKEILKKWFDE-KVPDSKEIIEEVREAVRV 149 (408)
T ss_pred HHHHHHhhhhccccceeEEEEEEeee-hHHHHHHHHHHHHHHHHHHHhhc-cCccHHHHHHHHHHHhhh
Confidence 35577888999999999999999985 5666 467777666655554111 222344444555555443
No 22
>TIGR03216 OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehydrogenase. Members of this protein family are 2-hydroxymuconic semialdehyde dehydrogenase. Many aromatic compounds are catabolized by way of the catechol, via the meta-cleavage pathway, to pyruvate and acetyl-CoA. This enzyme performs the second of seven steps in that pathway for catechol degradation.
Probab=25.24 E-value=1.9e+02 Score=25.57 Aligned_cols=80 Identities=14% Similarity=0.080 Sum_probs=48.2
Q ss_pred eEEEEcCCCcEEEEEeCCccHHHHHHHHHhhhhhCCeE-EEEEEEeeechHHHHHHHHHhhhHHHHHHHHHHhccCCCHH
Q 036010 60 QVKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCL-VLFNVLDLSGSIRACKNAALKREEVIFEHYKLAVGARFSAD 138 (155)
Q Consensus 60 ~V~y~~~~t~~~IIRc~r~~~~~v~aaL~li~~i~~~~-~~~~Vl~vSGTIr~~~k~~i~~~~~~l~~~~~~~~~~~~~~ 138 (155)
....+||.|+..|-+++....+.+..++.-.+.-...+ -.+..-.-..-++++-+.+.++..+..+.+....|.+..+.
T Consensus 15 ~~~~~~P~tg~~i~~~~~~~~~~v~~av~~A~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~ 94 (481)
T TIGR03216 15 TFANINPVDGRVIARVHEAGAAEVDAAVAAARAALKGPWGKMTVAERADLLYAVADEIERRFDDFLAAEVADTGKPRSLA 94 (481)
T ss_pred eEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHhHhhHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCcHHHH
Confidence 46778999999999999988888888776665443210 00001111223445555556555555555556668777554
Q ss_pred H
Q 036010 139 V 139 (155)
Q Consensus 139 ~ 139 (155)
.
T Consensus 95 ~ 95 (481)
T TIGR03216 95 S 95 (481)
T ss_pred h
Confidence 3
No 23
>PRK10854 exopolyphosphatase; Provisional
Probab=25.09 E-value=1.8e+02 Score=26.19 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=15.2
Q ss_pred EEEeeechHHHHHHHHHh
Q 036010 101 NVLDLSGSIRACKNAALK 118 (155)
Q Consensus 101 ~Vl~vSGTIr~~~k~~i~ 118 (155)
.++++|||++...+....
T Consensus 212 ~lig~gGT~r~la~i~~~ 229 (513)
T PRK10854 212 VALGASGTIKAAHEVLVE 229 (513)
T ss_pred EEEEechHHHHHHHHHHh
Confidence 699999999999877654
No 24
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=24.74 E-value=77 Score=22.34 Aligned_cols=28 Identities=18% Similarity=0.074 Sum_probs=16.5
Q ss_pred hcchhhhhhhcCceeEEEEcCCCcEEEEEeCC
Q 036010 46 NFSECGLASLLGSFQVKYVNPITKLCIIKASM 77 (155)
Q Consensus 46 lfGd~G~~~~~~~l~V~y~~~~t~~~IIRc~r 77 (155)
.-|.++... -..+||||.|+.+++.-.-
T Consensus 42 ~~GtYr~~~----~skV~~N~~T~~~Vi~d~~ 69 (92)
T PF11429_consen 42 EKGTYRRVK----DSKVYFNPKTNNVVIIDKD 69 (92)
T ss_dssp E--BETTST----T-EEEEETTTTEEEEE-TT
T ss_pred eccceecCC----CcEEEEeCCCCeEEEEcCC
Confidence 455555431 1368899999999886543
No 25
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=23.47 E-value=2.4e+02 Score=19.03 Aligned_cols=31 Identities=10% Similarity=0.066 Sum_probs=21.0
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHhh
Q 036010 122 VIFEHYKLAVGARFSADVTQHMDNCLEKIKI 152 (155)
Q Consensus 122 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (155)
+.+++.....-.+..++.++++...|.++|+
T Consensus 56 ~l~~~i~P~Ar~~VP~~vk~ell~~Ir~~L~ 86 (86)
T PF10163_consen 56 DLLEEITPKARAMVPDEVKKELLQRIRAFLD 86 (86)
T ss_dssp HHHHHHHHHHHHCS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHhC
Confidence 3444443333556689999999999998875
No 26
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=23.04 E-value=82 Score=21.82 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=19.5
Q ss_pred HhccCCCHHHHHHHHHHHHHHhh
Q 036010 130 AVGARFSADVTQHMDNCLEKIKI 152 (155)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~ 152 (155)
..+..++...++|+.++++.|+|
T Consensus 56 ~t~k~K~~KKK~~ln~afDAiLN 78 (83)
T PF05814_consen 56 QTEKAKSIKKKRDLNDAFDAILN 78 (83)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHh
Confidence 35677788899999999999987
No 27
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=22.89 E-value=2.6e+02 Score=19.14 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcchhhhhhhcCceeEEEEcCCCcEEEEEeCCccHHHHHHH
Q 036010 37 KAIRDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDFQKVWSA 86 (155)
Q Consensus 37 ~aIr~~v~~lfGd~G~~~~~~~l~V~y~~~~t~~~IIRc~r~~~~~v~aa 86 (155)
..+.+-+...||-- .+++||.|...--+.|-|..+..+-++.+
T Consensus 25 ~~L~~ev~~rf~l~-------~f~lKYlDde~e~v~lssd~eLeE~~rl~ 67 (81)
T cd06396 25 ASVEAMVKVSFGLN-------DIQIKYVDEENEEVSVNSQGEYEEALKSA 67 (81)
T ss_pred HHHHHHHHHHhCCC-------cceeEEEcCCCCEEEEEchhhHHHHHHHH
Confidence 44555555666633 58999999999999999988777766643
No 28
>PF01133 ER: Enhancer of rudimentary; InterPro: IPR000781 The Drosophila protein 'enhancer of rudimentary' (gene (e(r)) is a small protein of 104 residues whose function is not yet clear. From an evolutionary point of view, it is highly conserved [] and has been found to exist in probably all multicellular eukaryotic organisms. It has been proposed that this protein plays a role in the cell cycle.; GO: 0007049 cell cycle; PDB: 1W9G_A 2NML_A 1WWQ_A 1WZ7_B.
Probab=22.62 E-value=1.8e+02 Score=20.85 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=32.7
Q ss_pred chHHHHHHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhc
Q 036010 107 GSIRACKNAALKREEVIFEHYKLAVGARFSADVTQHMDNCLEKIKIL 153 (155)
Q Consensus 107 GTIr~~~k~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (155)
.|+..|-+.+-+..++.|++.+ +....-.=+..++.+.|+.+.||
T Consensus 23 eSv~~cmegIC~~YE~~LK~~n--P~~~~ItYdIs~Lf~fID~l~Dl 67 (102)
T PF01133_consen 23 ESVNECMEGICKIYEEHLKRKN--PNSPSITYDISDLFDFIDSLADL 67 (102)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHS--TT-SS----HHHHHHHHHHSSEE
T ss_pred hhHHHHHHHHHHHHHHHHHHcC--CCCCcccccHHHHHHHHhhhhhc
Confidence 5799999999999999998873 44444455678889999888775
No 29
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=22.34 E-value=2.1e+02 Score=19.32 Aligned_cols=32 Identities=16% Similarity=0.098 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHhh
Q 036010 121 EVIFEHYKLAVGARFSADVTQHMDNCLEKIKI 152 (155)
Q Consensus 121 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (155)
.+.++++...-.-.++++|.+++.+.+..|+.
T Consensus 5 ~e~i~~la~La~l~l~~ee~~~~~~~l~~il~ 36 (95)
T PRK00034 5 REEVKHLAKLARLELSEEELEKFAGQLNKILD 36 (95)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 34455554445667789998888888888775
No 30
>PF00745 GlutR_dimer: Glutamyl-tRNAGlu reductase, dimerisation domain; InterPro: IPR015896 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents the helical dimerisation domain of glutamyl-tRNA reductase (1.2.1.70 from EC) []. This enzyme reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway [, ]. The enzyme requires NADPH as a cofactor.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process, 0055114 oxidation-reduction process; PDB: 1GPJ_A.
Probab=20.37 E-value=91 Score=21.03 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=22.0
Q ss_pred eeechHHHHHHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 036010 104 DLSGSIRACKNAALKREEVIFEHYKLAVGARFSADVTQHMDNCLEK 149 (155)
Q Consensus 104 ~vSGTIr~~~k~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (155)
.+..+|+..+..+.......++.+...+ ..++++++.+......
T Consensus 22 ~~~p~I~~l~~~~e~i~~~el~~~~~~l--~~~~~~~~~i~~~~~~ 65 (101)
T PF00745_consen 22 KVDPVIKALREKAEEIRDEELERALKKL--DLDEDDEEVIEKLTRS 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-S------------TTHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCccHHHHHHHHHHH
Confidence 4567788888888888888887774332 2445555554444333
No 31
>PF04036 DUF372: Domain of unknown function (DUF372); InterPro: IPR007179 This is a group of proteins of unknown function. It is found N-terminal to another domain of unknown function (IPR007181 from INTERPRO).; PDB: 2I52_B 2IEC_D 2OGF_C.
Probab=20.14 E-value=2e+02 Score=17.01 Aligned_cols=35 Identities=20% Similarity=0.497 Sum_probs=22.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 036010 111 ACKNAALKREEVIFEHYKLAVGARFSADVTQHMDNCLEK 149 (155)
Q Consensus 111 ~~~k~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (155)
.|.++-|+. ....+|+ .|.+.+++..+-+.+++++
T Consensus 3 A~FEaGIkl-GaLyHQF---~GtPvs~~~~~~le~aie~ 37 (38)
T PF04036_consen 3 AVFEAGIKL-GALYHQF---VGTPVSPETAESLEKAIEE 37 (38)
T ss_dssp HHHHHHHHH-HHHHHHH---TT-EESTTTHHHHHHHHHH
T ss_pred hHHHhhHHH-HHHHHHh---cCCcCCcchHHHHHHHHhc
Confidence 455555553 3456777 8888888777777777764
No 32
>PRK09406 gabD1 succinic semialdehyde dehydrogenase; Reviewed
Probab=20.00 E-value=1.8e+02 Score=25.70 Aligned_cols=88 Identities=11% Similarity=0.047 Sum_probs=51.9
Q ss_pred EEEEcCCCcEEEEEeCCccHHHHHHHHHhhhhhCCeEEEEEEEeeechHHHHHHHHHhhhHHHHHHHHHHhccCCCHHHH
Q 036010 61 VKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKREEVIFEHYKLAVGARFSADVT 140 (155)
Q Consensus 61 V~y~~~~t~~~IIRc~r~~~~~v~aaL~li~~i~~~~~~~~Vl~vSGTIr~~~k~~i~~~~~~l~~~~~~~~~~~~~~~~ 140 (155)
+..+||.|+..|-++.....+.+..++.--+.-...=.....-.-...++++-+.+.++..+..+.+....|.+..+..
T Consensus 3 ~~~~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~- 81 (457)
T PRK09406 3 IATINPATGETVKTFTALTDDEVDAAIARAHARFRDYRTTTFAQRARWANAAADLLEAEADQVAALMTLEMGKTLASAK- 81 (457)
T ss_pred eeeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCHHHHH-
Confidence 4567999999999999888877777765544432210111111123345566666666655555555666788876543
Q ss_pred HHHHHHHHH
Q 036010 141 QHMDNCLEK 149 (155)
Q Consensus 141 ~~~~~~~~~ 149 (155)
-|+...++.
T Consensus 82 ~ev~~~~~~ 90 (457)
T PRK09406 82 AEALKCAKG 90 (457)
T ss_pred HHHHHHHHH
Confidence 245544443
Done!