Query 036010
Match_columns 155
No_of_seqs 101 out of 332
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 14:21:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2av5_A Ribonuclease P protein 100.0 5.8E-39 2E-43 235.3 11.6 105 2-118 11-115 (120)
2 2czv_C Ribonuclease P protein 100.0 7.6E-39 2.6E-43 234.8 11.7 105 2-118 11-115 (120)
3 2p9x_A Hypothetical protein PH 40.3 13 0.00043 25.5 1.6 18 37-54 47-64 (99)
4 3a9f_A Cytochrome C; alpha hel 25.2 90 0.0031 20.6 4.0 29 121-149 62-90 (92)
5 3a7m_A Flagellar protein FLIT; 21.9 1.1E+02 0.0036 21.4 4.0 33 122-154 42-75 (122)
6 3nkz_A Flagellar protein FLIT; 19.4 1.9E+02 0.0065 20.0 4.9 35 120-154 43-78 (123)
7 1p9i_A Cortexillin I/GCN4 hybr 19.4 94 0.0032 16.3 2.4 15 137-151 12-26 (31)
8 2fbi_A Probable transcriptiona 19.2 1.2E+02 0.0043 19.8 3.8 48 103-154 94-141 (142)
9 2cqk_A C-MPL binding protein; 19.2 1.3E+02 0.0045 20.3 3.9 26 29-54 8-33 (101)
10 2j8a_A Histone-lysine N-methyl 19.0 2.6E+02 0.0089 20.0 7.5 67 61-128 37-117 (136)
No 1
>2av5_A Ribonuclease P protein component 2; hydrolase; 3.15A {Pyrococcus furiosus} SCOP: d.58.59.1
Probab=100.00 E-value=5.8e-39 Score=235.32 Aligned_cols=105 Identities=23% Similarity=0.297 Sum_probs=95.7
Q ss_pred ccccCCcEEEEEEEeCCCCCCCCCCCCccCHHHHHHHHHHHHHHhcchhhhhhhcCceeEEEEcCCCcEEEEEeCCccHH
Q 036010 2 IVGFKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDFQ 81 (155)
Q Consensus 2 MVR~K~RYil~ei~~~~~~~~~~~~~~~l~~~~i~~aIr~~v~~lfGd~G~~~~~~~l~V~y~~~~t~~~IIRc~r~~~~ 81 (155)
|||+|||||+|||+++++ +++++|.++|+++++++|||+|+|.+. ++|+|||+.|++|||||+|++++
T Consensus 11 ~vR~K~RYll~ei~~~~~----------l~~~~l~~~I~~av~~~fGd~G~~~~~--~~v~~f~~~t~~~IiRc~r~~~~ 78 (120)
T 2av5_A 11 TLRDKKRYIAFKVISENQ----------FNKDEIKEAIWNACLRTLGELGTAKAK--PWLIKFDETTQTGIIRSDRNHVY 78 (120)
T ss_dssp ----CEEEEEEEEEESSC----------CCHHHHHHHHHHHHHHHHHHHHHHHHC--CEEEEEETTTTEEEEEEEGGGHH
T ss_pred cccccceEEEEEEEECCC----------CCHHHHHHHHHHHHHHhCCcccccccC--ccEEEEcCCCCEEEEEeCchhHH
Confidence 999999999999999864 899999999999999999999999875 77899999999999999999999
Q ss_pred HHHHHHHhhhhhCCeEEEEEEEeeechHHHHHHHHHh
Q 036010 82 KVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALK 118 (155)
Q Consensus 82 ~v~aaL~li~~i~~~~~~~~Vl~vSGTIr~~~k~~i~ 118 (155)
.+|+|||++++++|.||.|+|+|||||||+|++++++
T Consensus 79 ~v~aaLtli~~i~~~~~~~~vl~vSGTIr~~~~k~l~ 115 (120)
T 2av5_A 79 DVIFSLTLVSDINGNKAIIKVLGVSGTIKRLKRKFLS 115 (120)
T ss_dssp HHHHHHHTCCEETTEEEEEEEEEEESSHHHHHHHTTT
T ss_pred HHHHHHHHHhhCCCEEEEEEEeEEchhHHHHHHHHHh
Confidence 9999999999999999999999999999999966554
No 2
>2czv_C Ribonuclease P protein component 2; RNA binding protein, RNA recognition motif, protein-protein complex, hydrolase; HET: BOG; 2.00A {Pyrococcus horikoshii} SCOP: d.58.59.1
Probab=100.00 E-value=7.6e-39 Score=234.76 Aligned_cols=105 Identities=26% Similarity=0.317 Sum_probs=99.2
Q ss_pred ccccCCcEEEEEEEeCCCCCCCCCCCCccCHHHHHHHHHHHHHHhcchhhhhhhcCceeEEEEcCCCcEEEEEeCCccHH
Q 036010 2 IVGFKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDFQ 81 (155)
Q Consensus 2 MVR~K~RYil~ei~~~~~~~~~~~~~~~l~~~~i~~aIr~~v~~lfGd~G~~~~~~~l~V~y~~~~t~~~IIRc~r~~~~ 81 (155)
|||+|||||+|||+++++ +++++|.++|+++++++|||+|+|.+ +++|+|||+.|++|||||+|++++
T Consensus 11 ~vR~K~RYll~ei~~~~~----------l~~~~l~~~I~~av~~~fGd~G~~~~--~~~v~~f~~~t~~~IiRc~r~~~~ 78 (120)
T 2czv_C 11 TLRDKNRYIAFEIISDGD----------FTKDEVKELIWKSSLEVLGETGTAIV--KPWLIKFDPNTKTGIVRSDREYVE 78 (120)
T ss_dssp TTSCCEEEEEEEEECSSC----------CCHHHHHHHHHHHHHHHHHHHHHHHH--CCEEEEEETTTTEEEEEEEGGGHH
T ss_pred ccccccEEEEEEEEECCC----------CCHHHHHHHHHHHHHHhcCcchhhcc--CceEEEEcCCCCEEEEEeCchhHH
Confidence 899999999999998764 89999999999999999999999987 489999999999999999999999
Q ss_pred HHHHHHHhhhhhCCeEEEEEEEeeechHHHHHHHHHh
Q 036010 82 KVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALK 118 (155)
Q Consensus 82 ~v~aaL~li~~i~~~~~~~~Vl~vSGTIr~~~k~~i~ 118 (155)
.+|+|||++++++|.||.|+|+|||||||+|+++++.
T Consensus 79 ~v~aaLtli~~i~~~~~~~~vl~vSGTIr~~~~k~l~ 115 (120)
T 2czv_C 79 YLRFALMLVSEFNGKRLIIRTLGVSGTIKRLKRKFLA 115 (120)
T ss_dssp HHHHHHHTCCEETTEECEEEEEEEESSHHHHHHHHTG
T ss_pred HHHHHHHhHhhCCCEEEEEEEeEEChhHHHHHHHHHH
Confidence 9999999999999999999999999999999954443
No 3
>2p9x_A Hypothetical protein PH0832; pyrococcus horikoshii OT3, NPPSFA, national project on prote structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=40.28 E-value=13 Score=25.47 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcchhhhhh
Q 036010 37 KAIRDNILVNFSECGLAS 54 (155)
Q Consensus 37 ~aIr~~v~~lfGd~G~~~ 54 (155)
+-..++|.++||+|++..
T Consensus 47 ~kFkeaV~~LFGEysarl 64 (99)
T 2p9x_A 47 QKFKEAVSKLFGEYSARL 64 (99)
T ss_dssp HHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345678899999999875
No 4
>3a9f_A Cytochrome C; alpha helix, mono heme, electron transport; HET: HEC P33 PGE PG4; 1.30A {Chlorobaculum tepidum}
Probab=25.20 E-value=90 Score=20.61 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 036010 121 EVIFEHYKLAVGARFSADVTQHMDNCLEK 149 (155)
Q Consensus 121 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (155)
...++.+..|.|+.++++|.+.+-+.|.+
T Consensus 62 ~~iv~~M~~mpg~~Is~eda~~Iv~YLa~ 90 (92)
T 3a9f_A 62 NLIVKRMQGFPGSGISDDDAKTIGIWLHE 90 (92)
T ss_dssp HHHHHHHHHSTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 34455677788999999999988888765
No 5
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=21.95 E-value=1.1e+02 Score=21.36 Aligned_cols=33 Identities=6% Similarity=-0.009 Sum_probs=25.0
Q ss_pred HHHHHHHHH-hccCCCHHHHHHHHHHHHHHhhcc
Q 036010 122 VIFEHYKLA-VGARFSADVTQHMDNCLEKIKILE 154 (155)
Q Consensus 122 ~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 154 (155)
..++.++.. ...++++.++++..+.|.+||+-|
T Consensus 42 ~~Ve~l~~~~~~~~l~~~~~~~~~~lL~~IL~nD 75 (122)
T 3a7m_A 42 QSIETVMEKQTPPGITRSIQDMVAGYIKQTLDNE 75 (122)
T ss_dssp HHHHHHHSSCCCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhH
Confidence 445566533 366789999999999999999754
No 6
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp}
Probab=19.41 E-value=1.9e+02 Score=20.05 Aligned_cols=35 Identities=14% Similarity=-0.111 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHhhcc
Q 036010 120 EEVIFEHYKLAV-GARFSADVTQHMDNCLEKIKILE 154 (155)
Q Consensus 120 ~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 154 (155)
....++.++... ...+++.++++..+.|.+||+-|
T Consensus 43 y~~lVe~L~~~~~~~~ls~~~~~~~~~lL~~IL~nD 78 (123)
T 3nkz_A 43 YLKAVESTANITISSCSSLMLQDLLREKLRAILDNE 78 (123)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhH
Confidence 334566665443 66789999999999999999754
No 7
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=19.41 E-value=94 Score=16.31 Aligned_cols=15 Identities=7% Similarity=0.191 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHh
Q 036010 137 ADVTQHMDNCLEKIK 151 (155)
Q Consensus 137 ~~~~~~~~~~~~~~~ 151 (155)
+.|.||+++-+++++
T Consensus 12 eaenkqlkakveell 26 (31)
T 1p9i_A 12 EAENKQLKAKVEELL 26 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 567888988888876
No 8
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=19.21 E-value=1.2e+02 Score=19.78 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=28.8
Q ss_pred EeeechHHHHHHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhcc
Q 036010 103 LDLSGSIRACKNAALKREEVIFEHYKLAVGARFSADVTQHMDNCLEKIKILE 154 (155)
Q Consensus 103 l~vSGTIr~~~k~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (155)
+.++..=+..-+.+........+.+ -..++++|.+++.+.+.++..++
T Consensus 94 ~~lT~~G~~~~~~~~~~~~~~~~~~----~~~l~~~e~~~l~~~l~~l~~~~ 141 (142)
T 2fbi_A 94 VNLTEKGQQCFVSMSGDMEKNYQRI----QERFGEEKLAQLLELLNELKKIK 141 (142)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHH----HHHHCHHHHHHHHHHHHHHHTTC
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHH----HhhCCHHHHHHHHHHHHHHHhhc
Confidence 4444444444344443333333333 34578999999999999998764
No 9
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Probab=19.20 E-value=1.3e+02 Score=20.34 Aligned_cols=26 Identities=12% Similarity=0.279 Sum_probs=23.4
Q ss_pred ccCHHHHHHHHHHHHHHhcchhhhhh
Q 036010 29 ILTQFNVSKAIRDNILVNFSECGLAS 54 (155)
Q Consensus 29 ~l~~~~i~~aIr~~v~~lfGd~G~~~ 54 (155)
.++..++.+.|+..+.-+|+|-.+..
T Consensus 8 ~~~~~~l~~~I~~QvEyYFSd~NL~~ 33 (101)
T 2cqk_A 8 AVSTEDLKECLKKQLEFCFSRENLSK 33 (101)
T ss_dssp SCCHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcchhhhcc
Confidence 47899999999999999999988874
No 10
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=19.03 E-value=2.6e+02 Score=19.98 Aligned_cols=67 Identities=10% Similarity=0.066 Sum_probs=35.2
Q ss_pred EEEEcCCC----cEEEEEeCC---ccHHHHHHHHHhhh-------hhCCeEEEEEEEeeechHHHHHHHHHhhhHHHHHH
Q 036010 61 VKYVNPIT----KLCIIKASM---EDFQKVWSAITMVR-------SIGNCLVLFNVLDLSGSIRACKNAALKREEVIFEH 126 (155)
Q Consensus 61 V~y~~~~t----~~~IIRc~r---~~~~~v~aaL~li~-------~i~~~~~~~~Vl~vSGTIr~~~k~~i~~~~~~l~~ 126 (155)
-...||.| |.|.++-.. ..-+...||...+. .|+|.++.+.+ -=-|-+.+.-..+++.+......
T Consensus 37 ~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~l-n~~g~~~~~~~~~i~~~~~~~~~ 115 (136)
T 2j8a_A 37 EAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVIL-NKHSILNNIISKFVEINVKKLQK 115 (136)
T ss_dssp EEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEE-CCTTHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEE-CcccHHHHHHHHHHHHHHHHHHH
Confidence 35678887 566777762 12233334444445 34566665553 33455555555555555555555
Q ss_pred HH
Q 036010 127 YK 128 (155)
Q Consensus 127 ~~ 128 (155)
|.
T Consensus 116 ~~ 117 (136)
T 2j8a_A 116 LQ 117 (136)
T ss_dssp HH
T ss_pred HH
Confidence 53
Done!