Query 036017
Match_columns 283
No_of_seqs 134 out of 2997
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 08:35:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036017.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036017hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.5E-29 5.3E-34 236.3 20.1 269 2-280 93-366 (968)
2 PLN00113 leucine-rich repeat r 100.0 5.4E-29 1.2E-33 234.0 18.8 252 26-279 156-413 (968)
3 PLN03210 Resistant to P. syrin 99.9 5.4E-25 1.2E-29 208.2 22.0 275 1-283 557-882 (1153)
4 KOG0444 Cytoskeletal regulator 99.9 7.9E-27 1.7E-31 196.4 -1.0 267 2-283 103-375 (1255)
5 KOG4194 Membrane glycoprotein 99.9 1.1E-24 2.5E-29 181.8 6.4 266 4-280 80-375 (873)
6 KOG4194 Membrane glycoprotein 99.9 4.3E-25 9.4E-30 184.3 3.8 245 36-281 174-427 (873)
7 KOG0444 Cytoskeletal regulator 99.9 5.4E-25 1.2E-29 185.5 -2.7 252 26-281 95-350 (1255)
8 PLN03210 Resistant to P. syrin 99.9 3.4E-21 7.4E-26 182.5 20.5 240 3-257 612-903 (1153)
9 KOG0472 Leucine-rich repeat pr 99.8 1.7E-22 3.8E-27 161.9 -3.0 117 163-281 422-539 (565)
10 KOG0472 Leucine-rich repeat pr 99.8 4.4E-23 9.5E-28 165.3 -9.1 260 4-281 47-308 (565)
11 KOG0618 Serine/threonine phosp 99.8 5.6E-21 1.2E-25 167.2 -0.8 244 33-282 239-488 (1081)
12 PRK15370 E3 ubiquitin-protein 99.8 7.3E-18 1.6E-22 151.2 13.4 243 3-281 179-426 (754)
13 PRK15387 E3 ubiquitin-protein 99.8 1.7E-17 3.6E-22 148.4 15.5 214 36-281 243-456 (788)
14 cd00116 LRR_RI Leucine-rich re 99.7 1.3E-18 2.9E-23 144.1 5.5 267 6-281 2-318 (319)
15 cd00116 LRR_RI Leucine-rich re 99.7 1.1E-17 2.3E-22 138.8 5.0 241 40-281 3-289 (319)
16 KOG0618 Serine/threonine phosp 99.7 5.8E-19 1.3E-23 154.8 -2.8 244 31-280 216-462 (1081)
17 PRK15387 E3 ubiquitin-protein 99.6 1.7E-15 3.7E-20 135.7 12.9 217 2-260 242-458 (788)
18 PRK15370 E3 ubiquitin-protein 99.6 1.2E-15 2.7E-20 137.0 10.6 225 2-260 199-428 (754)
19 KOG0617 Ras suppressor protein 99.6 1.9E-17 4.2E-22 118.6 -4.0 170 48-221 24-194 (264)
20 KOG0617 Ras suppressor protein 99.6 6E-17 1.3E-21 116.1 -3.8 164 76-244 29-193 (264)
21 KOG4237 Extracellular matrix p 99.6 3.6E-16 7.8E-21 125.6 -0.9 250 31-281 63-357 (498)
22 KOG1909 Ran GTPase-activating 99.4 3.1E-13 6.7E-18 107.3 6.2 180 101-281 90-309 (382)
23 KOG4237 Extracellular matrix p 99.4 4.3E-15 9.4E-20 119.5 -5.5 244 6-259 71-358 (498)
24 KOG3207 Beta-tubulin folding c 99.4 1.8E-13 4E-18 111.5 1.6 202 77-278 118-334 (505)
25 KOG1909 Ran GTPase-activating 99.4 3.7E-13 8E-18 106.9 2.9 228 2-235 30-310 (382)
26 KOG4341 F-box protein containi 99.3 4.3E-14 9.3E-19 114.6 -2.7 274 3-283 139-439 (483)
27 KOG1259 Nischarin, modulator o 99.3 1.1E-12 2.5E-17 102.5 1.5 198 73-281 207-410 (490)
28 KOG3207 Beta-tubulin folding c 99.2 4.2E-12 9.2E-17 103.7 2.7 204 31-236 118-339 (505)
29 KOG0532 Leucine-rich repeat (L 99.2 4.4E-13 9.5E-18 112.8 -4.3 211 39-257 54-270 (722)
30 KOG0532 Leucine-rich repeat (L 99.2 1.6E-12 3.5E-17 109.5 -1.9 211 61-280 54-270 (722)
31 PF14580 LRR_9: Leucine-rich r 99.1 9.4E-11 2E-15 87.0 5.7 106 55-164 17-125 (175)
32 PF14580 LRR_9: Leucine-rich r 99.1 6E-11 1.3E-15 88.1 4.5 124 36-161 20-149 (175)
33 KOG1259 Nischarin, modulator o 99.1 3.5E-11 7.7E-16 94.2 2.8 127 102-235 283-411 (490)
34 KOG4658 Apoptotic ATPase [Sign 99.1 9.9E-11 2.1E-15 107.5 5.5 210 28-242 565-789 (889)
35 COG4886 Leucine-rich repeat (L 99.1 3.5E-10 7.7E-15 96.6 8.0 189 40-235 98-289 (394)
36 KOG2120 SCF ubiquitin ligase, 99.0 1.6E-11 3.4E-16 96.0 -2.8 179 57-235 185-375 (419)
37 COG4886 Leucine-rich repeat (L 99.0 1.4E-09 2.9E-14 93.0 7.5 194 61-262 97-292 (394)
38 KOG4341 F-box protein containi 98.9 1.2E-10 2.7E-15 94.8 -1.9 248 36-283 139-414 (483)
39 KOG4658 Apoptotic ATPase [Sign 98.9 3.9E-09 8.4E-14 97.2 6.6 78 195-273 712-797 (889)
40 KOG2120 SCF ubiquitin ligase, 98.9 1.2E-10 2.5E-15 91.2 -3.0 177 103-280 185-373 (419)
41 PLN03150 hypothetical protein; 98.8 1.4E-08 3.1E-13 91.1 8.6 104 178-281 420-526 (623)
42 PLN03150 hypothetical protein; 98.8 3.9E-08 8.5E-13 88.4 9.8 105 154-258 420-526 (623)
43 KOG2982 Uncharacterized conser 98.8 8.9E-09 1.9E-13 80.8 4.3 217 36-253 46-285 (418)
44 PF13855 LRR_8: Leucine rich r 98.6 4.1E-08 9E-13 60.0 3.3 56 202-257 3-59 (61)
45 COG5238 RNA1 Ran GTPase-activa 98.6 8.8E-08 1.9E-12 74.4 5.4 205 55-260 28-285 (388)
46 PF13855 LRR_8: Leucine rich r 98.5 7.8E-08 1.7E-12 58.8 3.3 36 197-232 22-58 (61)
47 KOG0531 Protein phosphatase 1, 98.5 1.1E-08 2.3E-13 87.9 -1.2 82 55-139 93-174 (414)
48 COG5238 RNA1 Ran GTPase-activa 98.5 6.7E-08 1.5E-12 75.1 2.7 205 1-212 29-284 (388)
49 KOG0531 Protein phosphatase 1, 98.5 1.6E-08 3.5E-13 86.7 -1.0 106 30-139 91-198 (414)
50 KOG2982 Uncharacterized conser 98.5 5.7E-08 1.2E-12 76.4 1.4 182 2-190 71-263 (418)
51 KOG1859 Leucine-rich repeat pr 98.3 1.3E-08 2.8E-13 88.9 -5.6 193 79-281 83-290 (1096)
52 KOG3665 ZYG-1-like serine/thre 98.3 7.9E-07 1.7E-11 80.2 3.9 106 103-210 122-230 (699)
53 PRK15386 type III secretion pr 98.2 1.1E-05 2.4E-10 67.6 8.8 135 99-257 48-187 (426)
54 KOG3665 ZYG-1-like serine/thre 98.1 6.3E-07 1.4E-11 80.8 1.0 81 56-137 147-230 (699)
55 KOG4579 Leucine-rich repeat (L 98.1 5.7E-07 1.2E-11 62.8 -0.7 108 154-263 29-139 (177)
56 KOG1947 Leucine rich repeat pr 98.0 2.8E-06 6.2E-11 74.5 3.0 34 249-282 403-439 (482)
57 PF12799 LRR_4: Leucine Rich r 98.0 6.5E-06 1.4E-10 46.2 2.8 41 223-264 1-41 (44)
58 KOG1859 Leucine-rich repeat pr 98.0 6.9E-08 1.5E-12 84.5 -8.0 118 65-188 172-291 (1096)
59 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.7E-10 45.1 3.0 35 36-70 2-37 (44)
60 KOG1947 Leucine rich repeat pr 97.9 3.3E-06 7.2E-11 74.1 0.6 111 79-189 187-308 (482)
61 PRK15386 type III secretion pr 97.9 3.5E-05 7.6E-10 64.7 6.1 137 75-233 47-187 (426)
62 KOG1644 U2-associated snRNP A' 97.8 4.1E-05 8.8E-10 57.3 5.4 126 37-163 21-151 (233)
63 KOG1644 U2-associated snRNP A' 97.7 8.5E-05 1.8E-09 55.6 5.6 59 80-139 42-100 (233)
64 KOG4579 Leucine-rich repeat (L 97.6 1.3E-05 2.8E-10 56.2 0.2 111 105-218 29-141 (177)
65 KOG2123 Uncharacterized conser 97.6 1.7E-06 3.6E-11 67.7 -4.9 97 36-133 20-123 (388)
66 KOG2739 Leucine-rich acidic nu 97.4 9.4E-05 2E-09 57.5 1.9 89 26-115 35-128 (260)
67 KOG2123 Uncharacterized conser 97.2 1.1E-05 2.3E-10 63.3 -4.6 97 2-109 19-123 (388)
68 KOG2739 Leucine-rich acidic nu 96.5 0.0019 4.2E-08 50.4 2.6 103 175-280 42-153 (260)
69 PF13306 LRR_5: Leucine rich r 96.3 0.026 5.6E-07 39.8 7.5 117 28-154 6-128 (129)
70 PF13306 LRR_5: Leucine rich r 96.3 0.026 5.7E-07 39.7 7.3 78 55-136 10-90 (129)
71 PF00560 LRR_1: Leucine Rich R 95.8 0.0034 7.4E-08 29.2 0.6 18 249-266 2-19 (22)
72 PF13504 LRR_7: Leucine rich r 95.5 0.0071 1.5E-07 26.1 0.9 15 248-262 2-16 (17)
73 PF00560 LRR_1: Leucine Rich R 95.3 0.0096 2.1E-07 27.7 1.0 16 202-217 2-17 (22)
74 KOG4308 LRR-containing protein 95.1 0.00058 1.2E-08 59.4 -6.0 34 247-280 262-300 (478)
75 KOG3864 Uncharacterized conser 94.3 0.012 2.5E-07 44.5 -0.1 79 178-256 103-185 (221)
76 KOG3864 Uncharacterized conser 93.7 0.02 4.3E-07 43.3 0.1 81 56-136 100-185 (221)
77 smart00370 LRR Leucine-rich re 92.5 0.11 2.4E-06 25.0 1.8 21 246-266 1-21 (26)
78 smart00369 LRR_TYP Leucine-ric 92.5 0.11 2.4E-06 25.0 1.8 21 246-266 1-21 (26)
79 smart00367 LRR_CC Leucine-rich 91.5 0.12 2.6E-06 25.0 1.3 15 269-283 1-15 (26)
80 KOG4308 LRR-containing protein 89.6 0.0075 1.6E-07 52.6 -6.9 86 175-260 203-303 (478)
81 PF13516 LRR_6: Leucine Rich r 85.0 0.38 8.1E-06 22.6 0.5 14 247-260 2-15 (24)
82 smart00364 LRR_BAC Leucine-ric 85.0 0.53 1.1E-05 22.8 1.0 18 247-264 2-19 (26)
83 KOG0473 Leucine-rich repeat pr 77.0 0.074 1.6E-06 41.3 -5.4 84 175-260 41-124 (326)
84 KOG3763 mRNA export factor TAP 76.3 1.7 3.7E-05 38.3 1.8 35 199-233 217-254 (585)
85 smart00365 LRR_SD22 Leucine-ri 74.6 2.3 5.1E-05 20.6 1.3 16 247-262 2-17 (26)
86 KOG0473 Leucine-rich repeat pr 73.4 0.13 2.8E-06 40.0 -4.9 86 195-281 37-122 (326)
87 smart00368 LRR_RI Leucine rich 69.1 3.4 7.5E-05 20.2 1.3 14 247-260 2-15 (28)
88 KOG3763 mRNA export factor TAP 67.0 4.8 0.0001 35.6 2.5 63 55-117 216-284 (585)
89 PF07723 LRR_2: Leucine Rich R 28.6 30 0.00065 16.6 0.7 14 3-16 1-14 (26)
90 PF05725 FNIP: FNIP Repeat; I 24.4 1.3E+02 0.0029 16.3 3.7 10 33-42 10-19 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=2.5e-29 Score=236.28 Aligned_cols=269 Identities=22% Similarity=0.269 Sum_probs=173.4
Q ss_pred CCceeEEeeccccCCCCCCCcccccCCcCC-CcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcc-cchhhhhcc
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLD-YLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVE-LLWEEKKEA 79 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~l~~~ 79 (283)
++|++|++++|.+.+ .+|..+. .++ +|++|++++|.+....+...+++|++|++++|.+. .++..+..+
T Consensus 93 ~~L~~L~Ls~n~~~~--------~ip~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l 163 (968)
T PLN00113 93 PYIQTINLSNNQLSG--------PIPDDIFTTSS-SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSF 163 (968)
T ss_pred CCCCEEECCCCccCC--------cCChHHhccCC-CCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcC
Confidence 456666666665554 3444332 455 66666666666532222234566666666666665 455566677
Q ss_pred CCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEe
Q 036017 80 FKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLD 158 (283)
Q Consensus 80 ~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 158 (283)
++|+.|++++|.....++ .+.++++|++|++++|......|..+..+++|++|++++|.+.+.+|..+. .+++|+.|+
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~ 242 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLD 242 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh-cCCCCCEEE
Confidence 777777777776555554 466677777777777666556666667777777777777766666666665 677777777
Q ss_pred ccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcc-ccchhhhcCCCccEEecccccCCC
Q 036017 159 LAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIK-ELPSSVEHLEGLKELRMEYCYKLS 237 (283)
Q Consensus 159 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~ 237 (283)
+++|.+.+..|..++.+++|+.|++.+|.+.+..|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|...+
T Consensus 243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC
Confidence 7776665566666667777777777776666666666666677777777776665 556566666677777776666555
Q ss_pred CCccccCCCcccceeecCCcccc-cccHHhhccCCCCceeeccC
Q 036017 238 KLPDNLGSLRSLKRLHTGKSAIS-QLPSSIADLKQVDGLSFYGC 280 (283)
Q Consensus 238 ~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~c 280 (283)
.+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|
T Consensus 323 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 323 KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 56666666666666666666665 55666666666666666655
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=5.4e-29 Score=233.97 Aligned_cols=252 Identities=22% Similarity=0.311 Sum_probs=125.8
Q ss_pred cCCcCCCcccCceEEEecCCCC-CccCCCC-CCCcceEEecCCCCcc-cchhhhhccCCccEEEccCCCCCCCCC-CCCC
Q 036017 26 LDQGLDYLPEELRYLHWHGYPL-RTLPTNL-STDKLVVLNLPCSNVE-LLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSE 101 (283)
Q Consensus 26 ~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~-~~~~L~~l~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~ 101 (283)
+|..+..++ +|++|++++|.+ +.+|..+ ++++|++|++++|.+. .+|..+.++.+|+.|++.+|.....++ .++.
T Consensus 156 ~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 156 IPNDIGSFS-SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred CChHHhcCC-CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence 344445555 555555555554 2333333 5555555555555544 344445555555555555555443343 3455
Q ss_pred CCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeE
Q 036017 102 TPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWL 181 (283)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 181 (283)
+++|++|++++|...+..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|++++|.+.+..|..+..+++|+.|
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 313 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEIL 313 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEE
Confidence 55555555555544444555555555555555555555444444444 55555555555555444445455555555555
Q ss_pred eecCCCCCCCCchhhhcCCCCcEEeecCCCcc-ccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc
Q 036017 182 RLYNCSKLESFPGILENMARLEYIDLRLTAIK-ELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS 260 (283)
Q Consensus 182 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~ 260 (283)
++.+|.+.+..+..+..+++|+.+++++|.+. .+|..++.+++|+.|++++|...+.+|..+..+++|+.|++++|.++
T Consensus 314 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~ 393 (968)
T PLN00113 314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393 (968)
T ss_pred ECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEec
Confidence 55555555445555555555555555555554 44444555555555555554443333333333333333333333333
Q ss_pred -cccHHhhccCCCCceeecc
Q 036017 261 -QLPSSIADLKQVDGLSFYG 279 (283)
Q Consensus 261 -~~~~~~~~~~~L~~L~l~~ 279 (283)
.+|..+..+++|++|++.+
T Consensus 394 ~~~p~~~~~~~~L~~L~L~~ 413 (968)
T PLN00113 394 GEIPKSLGACRSLRRVRLQD 413 (968)
T ss_pred ccCCHHHhCCCCCCEEECcC
Confidence 3333333444444444433
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=5.4e-25 Score=208.15 Aligned_cols=275 Identities=33% Similarity=0.593 Sum_probs=200.7
Q ss_pred CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccC
Q 036017 1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAF 80 (283)
Q Consensus 1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~ 80 (283)
|++|+.|.++.+.+.. .......+|..+..+|.+|+.|.+.++++..+|..+...+|+.|+++++.+..++.....++
T Consensus 557 m~~L~~L~~~~~~~~~--~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~ 634 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQ--KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLT 634 (1153)
T ss_pred CccccEEEEecccccc--cccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCC
Confidence 6789999987654321 11223467788888887899999999999999998888999999999999999988888899
Q ss_pred CccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEecc
Q 036017 81 KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLA 160 (283)
Q Consensus 81 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 160 (283)
+|+.++++++.....++.+..+++|++|++.+|.....+|..+..+++|+.|++++|...+.+|..+ .+++|+.|+++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Ls 712 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLS 712 (1153)
T ss_pred CCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCC
Confidence 9999999998777888888899999999999998888888889999999999999987666677654 57778888777
Q ss_pred CCcCcccchhhh--------------------------------------------------cCCCCCCeEeecCCCCCC
Q 036017 161 HCKRLNRLSASI--------------------------------------------------CKLKSLSWLRLYNCSKLE 190 (283)
Q Consensus 161 ~~~~~~~~~~~l--------------------------------------------------~~~~~L~~L~l~~~~~~~ 190 (283)
+|.....+|... ..+++|+.|++++|....
T Consensus 713 gc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~ 792 (1153)
T PLN03210 713 GCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV 792 (1153)
T ss_pred CCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcc
Confidence 765433322110 011345555555555555
Q ss_pred CCchhhhcCCCCcEEeecCCC-ccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccHHhhcc
Q 036017 191 SFPGILENMARLEYIDLRLTA-IKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADL 269 (283)
Q Consensus 191 ~~~~~~~~~~~L~~l~l~~~~-l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~ 269 (283)
.+|..+..+++|+.|++++|. +..+|..+ .+++|+.|++++|.....+|.. ..+|+.|++++|.++.+|..+..+
T Consensus 793 ~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l 868 (1153)
T PLN03210 793 ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKF 868 (1153)
T ss_pred ccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcC
Confidence 555556666666666666643 34555433 4556666666666555444332 246777788888888888888888
Q ss_pred CCCCceeeccCCCC
Q 036017 270 KQVDGLSFYGCRGL 283 (283)
Q Consensus 270 ~~L~~L~l~~c~~l 283 (283)
++|++|++.+|+++
T Consensus 869 ~~L~~L~L~~C~~L 882 (1153)
T PLN03210 869 SNLSFLDMNGCNNL 882 (1153)
T ss_pred CCCCEEECCCCCCc
Confidence 88888888887654
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=7.9e-27 Score=196.45 Aligned_cols=267 Identities=21% Similarity=0.292 Sum_probs=212.8
Q ss_pred CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCC--CCCcceEEecCCCCcccchhhhhcc
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNL--STDKLVVLNLPCSNVELLWEEKKEA 79 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~l~~~ 79 (283)
+.|..|++++|.+. ..|..+...+ ++-.|++++++++++|... ++..|-.|++++|.+..+|..+..+
T Consensus 103 ~dLt~lDLShNqL~---------EvP~~LE~AK-n~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL 172 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLR---------EVPTNLEYAK-NSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRL 172 (1255)
T ss_pred ccceeeecchhhhh---------hcchhhhhhc-CcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHH
Confidence 45666677766666 5667777777 7777888888887777655 7777778888888888777777777
Q ss_pred CCccEEEccCCCCCCC-CCCCCCCCCCcEEeeeCCCCC-CcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEE
Q 036017 80 FKLKSVDLCNSQNLTR-MPDLSETPNLERMYLLNCTNL-PFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVL 157 (283)
Q Consensus 80 ~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 157 (283)
.+|+.|.+++|...-. +..+..+.+|+.|.+++.+.. ..+|..+..+.+|..++++.|.+ ..+|..+. .+++|+.|
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L-p~vPecly-~l~~LrrL 250 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL-PIVPECLY-KLRNLRRL 250 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC-CcchHHHh-hhhhhhee
Confidence 8888888877763322 123445566667777765432 35788889999999999999875 44888888 89999999
Q ss_pred eccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcc--ccchhhhcCCCccEEecccccC
Q 036017 158 DLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIK--ELPSSVEHLEGLKELRMEYCYK 235 (283)
Q Consensus 158 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~~ 235 (283)
++++|.+. .+....+.+.++++|+++.|.++ .+|..+++++.|+.|...+|.++ ++|+.++.+..|+.+..++ +.
T Consensus 251 NLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~ 327 (1255)
T KOG0444|consen 251 NLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NK 327 (1255)
T ss_pred ccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cc
Confidence 99998754 33444566788999999996655 58888999999999999999887 9999999999999999987 45
Q ss_pred CCCCccccCCCcccceeecCCcccccccHHhhccCCCCceeeccCCCC
Q 036017 236 LSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCRGL 283 (283)
Q Consensus 236 ~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c~~l 283 (283)
++-+|+.++.|..|+.|.++.|.+..+|..+.-++.|+.|+++.++++
T Consensus 328 LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 328 LELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred cccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCc
Confidence 678899999999999999999999999999999999999999999875
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.1e-24 Score=181.78 Aligned_cols=266 Identities=21% Similarity=0.222 Sum_probs=159.9
Q ss_pred ceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCC-CCCcceEEecCCCCcccch-hhhhccCC
Q 036017 4 LRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNL-STDKLVVLNLPCSNVELLW-EEKKEAFK 81 (283)
Q Consensus 4 L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~-~~l~~~~~ 81 (283)
.+.|++++|.++. .-+.++.++| +|+.+++..+.++.+|.+. -.-+|+.|++.+|.+..+. +.+..++.
T Consensus 80 t~~LdlsnNkl~~--------id~~~f~nl~-nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~a 150 (873)
T KOG4194|consen 80 TQTLDLSNNKLSH--------IDFEFFYNLP-NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPA 150 (873)
T ss_pred eeeeecccccccc--------CcHHHHhcCC-cceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhh
Confidence 3568888887764 3345678889 9999999999999988887 4466999999999888664 45667788
Q ss_pred ccEEEccCCCCCCCCC--CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEec
Q 036017 82 LKSVDLCNSQNLTRMP--DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDL 159 (283)
Q Consensus 82 L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 159 (283)
|+.||++.|. +..++ .+..-.++++|++++|.....-...+..+.+|..|.++.|.++. +|......+++|+.|++
T Consensus 151 lrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 151 LRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLPKLESLDL 228 (873)
T ss_pred hhhhhhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc-cCHHHhhhcchhhhhhc
Confidence 8888888776 33333 45555678888887765443333445666677777777777655 55444425777777777
Q ss_pred cCCcCcccchhhhcCCCCCCeEeecCCCCCCCCc------------------------hhhhcCCCCcEEeecCCCccc-
Q 036017 160 AHCKRLNRLSASICKLKSLSWLRLYNCSKLESFP------------------------GILENMARLEYIDLRLTAIKE- 214 (283)
Q Consensus 160 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~------------------------~~~~~~~~L~~l~l~~~~l~~- 214 (283)
.+|++...--..+.++++|+.|.+..|.+..--. .++.++..|+.|++++|.+..
T Consensus 229 nrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri 308 (873)
T KOG4194|consen 229 NRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI 308 (873)
T ss_pred cccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee
Confidence 7765432222234455555555555544433222 344444555555555555542
Q ss_pred cchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccH-HhhccCCCCceeeccC
Q 036017 215 LPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPS-SIADLKQVDGLSFYGC 280 (283)
Q Consensus 215 ~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~c 280 (283)
.++.|+.+++|++|+++.|+...--+..+..+..|+.|.++.|.|+.+.+ .+..+++|++|+++.+
T Consensus 309 h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N 375 (873)
T KOG4194|consen 309 HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN 375 (873)
T ss_pred ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC
Confidence 23345555555555555544333223334445555555555555554432 3345556666665544
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=4.3e-25 Score=184.25 Aligned_cols=245 Identities=20% Similarity=0.208 Sum_probs=169.9
Q ss_pred CceEEEecCCCCCccCCCC--CCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCC-CCCCCCCCCCcEEeee
Q 036017 36 ELRYLHWHGYPLRTLPTNL--STDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTR-MPDLSETPNLERMYLL 111 (283)
Q Consensus 36 ~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~ 111 (283)
++++|+++++.++++.... ++.+|.++.++.|++..+|. .+.++++|+.|++..|.+... ...|..+++|+.|.+.
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ 253 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence 6888888888776654332 66678888888888887764 344588888888877763322 2356777777777777
Q ss_pred CCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCC
Q 036017 112 NCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLES 191 (283)
Q Consensus 112 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 191 (283)
.|....---..+..+.++++|++..|++...-..+++ ++++|+.|++++|.+...-+..+..+++|++|+++.|.+..-
T Consensus 254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL 332 (873)
T ss_pred hcCcccccCcceeeecccceeecccchhhhhhccccc-ccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence 6654433334567777888888888776543344555 778888888888776655566677778888888888776665
Q ss_pred CchhhhcCCCCcEEeecCCCccccchh-hhcCCCccEEecccccCC---CCCccccCCCcccceeecCCccccccc-HHh
Q 036017 192 FPGILENMARLEYIDLRLTAIKELPSS-VEHLEGLKELRMEYCYKL---SKLPDNLGSLRSLKRLHTGKSAISQLP-SSI 266 (283)
Q Consensus 192 ~~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~---~~l~~~~~~l~~L~~L~l~~~~i~~~~-~~~ 266 (283)
-+..+..+..|+.|.+++|.+..+.+. +..+++|++|++.+|... ++-...+..+++|+.|++.+|++..++ +.+
T Consensus 333 ~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAf 412 (873)
T KOG4194|consen 333 DEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAF 412 (873)
T ss_pred ChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhh
Confidence 556677777788888888877755554 467777888887776544 233344666778888888888887776 466
Q ss_pred hccCCCCceeeccCC
Q 036017 267 ADLKQVDGLSFYGCR 281 (283)
Q Consensus 267 ~~~~~L~~L~l~~c~ 281 (283)
..++.|+.|++.++.
T Consensus 413 sgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 413 SGLEALEHLDLGDNA 427 (873)
T ss_pred ccCcccceecCCCCc
Confidence 777888888877663
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=5.4e-25 Score=185.51 Aligned_cols=252 Identities=23% Similarity=0.299 Sum_probs=164.7
Q ss_pred cCCcCCCcccCceEEEecCCCCCccCCCC-CCCcceEEecCCCCcccchhh-hhccCCccEEEccCCCCCCCCCCCCCCC
Q 036017 26 LDQGLDYLPEELRYLHWHGYPLRTLPTNL-STDKLVVLNLPCSNVELLWEE-KKEAFKLKSVDLCNSQNLTRMPDLSETP 103 (283)
Q Consensus 26 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 103 (283)
+|.-+-.+. .|+.|+++++++..+|... ...++-.|++++|++..+|.. +.++..|-.|++++|......|.+.++.
T Consensus 95 iP~diF~l~-dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 95 IPTDIFRLK-DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLS 173 (1255)
T ss_pred CCchhcccc-cceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHh
Confidence 344444444 5555555555555555444 445555555555555555543 2344555555555555333333455666
Q ss_pred CCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCc-CCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEe
Q 036017 104 NLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKIL-GPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLR 182 (283)
Q Consensus 104 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 182 (283)
.|++|.+++|+..-.--..+..+.+|++|.+++.+.+ ..+|..+- .+.+|..+|++.|. ....|..+..+++|+.|+
T Consensus 174 ~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld-~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLN 251 (1255)
T KOG0444|consen 174 MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD-DLHNLRDVDLSENN-LPIVPECLYKLRNLRRLN 251 (1255)
T ss_pred hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchh-hhhhhhhccccccC-CCcchHHHhhhhhhheec
Confidence 6666666665543332233444455666666655432 23555554 66777777887755 455677777788888888
Q ss_pred ecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCC-CCCccccCCCcccceeecCCccccc
Q 036017 183 LYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKL-SKLPDNLGSLRSLKRLHTGKSAISQ 261 (283)
Q Consensus 183 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~-~~l~~~~~~l~~L~~L~l~~~~i~~ 261 (283)
+++|.++. +.-......+|++|++++|+++.+|+.+..++.|+.|.+.+|... ..+|+.++++..|+.+..++|.+..
T Consensus 252 LS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl 330 (1255)
T KOG0444|consen 252 LSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL 330 (1255)
T ss_pred cCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc
Confidence 88866654 333345567888888888888888888888888888888876655 6788888888899999999999999
Q ss_pred ccHHhhccCCCCceeeccCC
Q 036017 262 LPSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 262 ~~~~~~~~~~L~~L~l~~c~ 281 (283)
+|..++.|+.|+.|.+..+.
T Consensus 331 VPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 331 VPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred CchhhhhhHHHHHhcccccc
Confidence 99999999999999887653
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=3.4e-21 Score=182.54 Aligned_cols=240 Identities=28% Similarity=0.382 Sum_probs=133.3
Q ss_pred CceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCC-CCccCCCCCCCcceEEecCCC-CcccchhhhhccC
Q 036017 3 NLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYP-LRTLPTNLSTDKLVVLNLPCS-NVELLWEEKKEAF 80 (283)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~l~~~~ 80 (283)
+|++|++.++.+. .++..+..++ +|++|+++++. +..+|....+++|+.|++++| .+..+|..+..+.
T Consensus 612 ~L~~L~L~~s~l~---------~L~~~~~~l~-~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~ 681 (1153)
T PLN03210 612 NLVKLQMQGSKLE---------KLWDGVHSLT-GLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLN 681 (1153)
T ss_pred CCcEEECcCcccc---------ccccccccCC-CCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccC
Confidence 4555555555444 4555566677 77888877665 456665446778888888776 4556777777788
Q ss_pred CccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHh-------------
Q 036017 81 KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFI------------- 147 (283)
Q Consensus 81 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------- 147 (283)
+|+.|++.+|.....+|...++++|+.|.+++|.....+|.. ..+|+.|+++++.+. .+|..+
T Consensus 682 ~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~ 757 (1153)
T PLN03210 682 KLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEM 757 (1153)
T ss_pred CCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccccccccccccccccccc
Confidence 888888887766666664446777777777776544433321 223444444444321 122110
Q ss_pred ----------------hcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecC--
Q 036017 148 ----------------SLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRL-- 209 (283)
Q Consensus 148 ----------------~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~-- 209 (283)
...+++|+.|++++|.....+|..++++++|+.|++.+|...+.+|... .+++|+.|++++
T Consensus 758 ~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 758 KSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS 836 (1153)
T ss_pred chhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence 0022455556666555555555556666666666666655544444322 344555555554
Q ss_pred -------------------CCccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCc
Q 036017 210 -------------------TAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKS 257 (283)
Q Consensus 210 -------------------~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~ 257 (283)
|.+..+|..+..+++|+.|++.+|+.+..++.....+++|+.+++++|
T Consensus 837 ~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 837 RLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred ccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 444444444444555555555555444444444444444444444443
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=1.7e-22 Score=161.89 Aligned_cols=117 Identities=20% Similarity=0.421 Sum_probs=98.1
Q ss_pred cCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccc
Q 036017 163 KRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDN 242 (283)
Q Consensus 163 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~ 242 (283)
+....++..++.+++|..|+++. ++...+|..++.+..|+.++++.|.+..+|........++.+..++ .+++.++..
T Consensus 422 n~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~-nqi~~vd~~ 499 (565)
T KOG0472|consen 422 NKISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASN-NQIGSVDPS 499 (565)
T ss_pred CccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcc-ccccccChH
Confidence 34456667788889999999987 6667788888888889999999999999998888877777777666 455556554
Q ss_pred -cCCCcccceeecCCcccccccHHhhccCCCCceeeccCC
Q 036017 243 -LGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 243 -~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c~ 281 (283)
+..+.+|.+||+.+|.+..+|..+++|.+|++|++.|++
T Consensus 500 ~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 500 GLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred HhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCc
Confidence 888999999999999999999999999999999999986
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=4.4e-23 Score=165.31 Aligned_cols=260 Identities=27% Similarity=0.334 Sum_probs=218.7
Q ss_pred ceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCC-CCCcceEEecCCCCcccchhhhhccCCc
Q 036017 4 LRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNL-STDKLVVLNLPCSNVELLWEEKKEAFKL 82 (283)
Q Consensus 4 L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~l~~~~~L 82 (283)
+..+.+++|.+. .+..-+.+++ .+..|.++++...++|+.. .+..+..++++.+++..+|..+.....+
T Consensus 47 l~~lils~N~l~---------~l~~dl~nL~-~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l 116 (565)
T KOG0472|consen 47 LQKLILSHNDLE---------VLREDLKNLA-CLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISL 116 (565)
T ss_pred hhhhhhccCchh---------hccHhhhccc-ceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhh
Confidence 445566666655 4556677788 8999999999998888777 7888999999999999999989999999
Q ss_pred cEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCC
Q 036017 83 KSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHC 162 (283)
Q Consensus 83 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 162 (283)
+.++.+.+......+.++++..++.++..+|+ +...|..+..+.++..+++.+|.... .|+... .|+.|+++|...|
T Consensus 117 ~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i-~m~~L~~ld~~~N 193 (565)
T KOG0472|consen 117 VKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKA-LPENHI-AMKRLKHLDCNSN 193 (565)
T ss_pred hhhhccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccchhh-CCHHHH-HHHHHHhcccchh
Confidence 99999998866556688999999999988765 56778888888899999999988655 555554 6999999999874
Q ss_pred cCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhh-hcCCCccEEecccccCCCCCcc
Q 036017 163 KRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSV-EHLEGLKELRMEYCYKLSKLPD 241 (283)
Q Consensus 163 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~~~~~l~~ 241 (283)
..+.+|+.++++.+|.-|++..|++.. +| .|.+|..|..++++.|.+..+|+.. .+++++..||+-.| .++..|+
T Consensus 194 -~L~tlP~~lg~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pd 269 (565)
T KOG0472|consen 194 -LLETLPPELGGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPD 269 (565)
T ss_pred -hhhcCChhhcchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCch
Confidence 477889999999999999999977663 44 7889999999999999999888876 48999999999984 5778999
Q ss_pred ccCCCcccceeecCCcccccccHHhhccCCCCceeeccCC
Q 036017 242 NLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 242 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c~ 281 (283)
.++.+.+|.+||+++|.|+.+|..++++ .|+.|.+.|+|
T Consensus 270 e~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 270 EICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred HHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 9999999999999999999999999999 89999888875
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=5.6e-21 Score=167.24 Aligned_cols=244 Identities=23% Similarity=0.278 Sum_probs=179.1
Q ss_pred cccCceEEEecCCCCCccCCCC-CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCC-CCCCCCcEEee
Q 036017 33 LPEELRYLHWHGYPLRTLPTNL-STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDL-SETPNLERMYL 110 (283)
Q Consensus 33 ~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l 110 (283)
.|.+|++++++.+.+..+|.+. .+.+|+.+.+..|.+.+++..+....+|+.+.+..|+ +..++.+ ..+..|++|++
T Consensus 239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeee
Confidence 4557888888888888888666 7888888888888888888777777888888888877 5555544 44888888888
Q ss_pred eCCCCCCcchhh-ccCCC-CCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCC
Q 036017 111 LNCTNLPFISSS-IENLN-NLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSK 188 (283)
Q Consensus 111 ~~~~~~~~~~~~-~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 188 (283)
..|.. ..+|.. +.... .++.++.+.+.+.. .|..-...++.|+.|++.+|.+....-+.+.+..+|+.|++++|.+
T Consensus 318 ~~N~L-~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 318 QSNNL-PSLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred hhccc-cccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence 87654 444432 22222 24455555544322 3321111456788999999888777767788899999999999665
Q ss_pred CCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc--cccHHh
Q 036017 189 LESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS--QLPSSI 266 (283)
Q Consensus 189 ~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~--~~~~~~ 266 (283)
...-...+.++..|+.|++++|.++.+|..+..++.|++|...+|. +..+| .+.+++.|+.+|++.|.++ .++...
T Consensus 396 ~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~-l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 396 NSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ-LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred ccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc-eeech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence 5433366778899999999999999999889999999999988854 55566 7788999999999999988 333322
Q ss_pred hccCCCCceeeccCCC
Q 036017 267 ADLKQVDGLSFYGCRG 282 (283)
Q Consensus 267 ~~~~~L~~L~l~~c~~ 282 (283)
.-|+|++||++|+.+
T Consensus 474 -p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 474 -PSPNLKYLDLSGNTR 488 (1081)
T ss_pred -CCcccceeeccCCcc
Confidence 228999999999874
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=7.3e-18 Score=151.23 Aligned_cols=243 Identities=18% Similarity=0.266 Sum_probs=180.7
Q ss_pred CceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCc
Q 036017 3 NLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKL 82 (283)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L 82 (283)
+...|+++++.++ .+|..+ |++++.|++++|.+..+|... ..+|+.|++++|.+..+|..+ ..+|
T Consensus 179 ~~~~L~L~~~~Lt---------sLP~~I---p~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l--~~~L 243 (754)
T PRK15370 179 NKTELRLKILGLT---------TIPACI---PEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATL--PDTI 243 (754)
T ss_pred CceEEEeCCCCcC---------cCCccc---ccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhh--hccc
Confidence 4567788776666 455433 448999999999998887655 368999999999999887655 3579
Q ss_pred cEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccC
Q 036017 83 KSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAH 161 (283)
Q Consensus 83 ~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 161 (283)
+.|++++|... .+| .+ ..+|+.|++++|.. ..+|..+ .++|+.|++++|.+.. +|..+ .++|+.|++++
T Consensus 244 ~~L~Ls~N~L~-~LP~~l--~s~L~~L~Ls~N~L-~~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l---p~sL~~L~Ls~ 313 (754)
T PRK15370 244 QEMELSINRIT-ELPERL--PSALQSLDLFHNKI-SCLPENL--PEELRYLSVYDNSIRT-LPAHL---PSGITHLNVQS 313 (754)
T ss_pred cEEECcCCccC-cCChhH--hCCCCEEECcCCcc-Ccccccc--CCCCcEEECCCCcccc-Ccccc---hhhHHHHHhcC
Confidence 99999998744 555 23 25799999998754 3566544 2589999999998754 55443 25789999998
Q ss_pred CcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCcc
Q 036017 162 CKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPD 241 (283)
Q Consensus 162 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~ 241 (283)
|.+. .+|..+ .++|+.|++++|.+.. +|..+ .++|+.|++++|.++.+|..+ .+.|+.|++++|.. ..+|.
T Consensus 314 N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~L-t~LP~ 384 (754)
T PRK15370 314 NSLT-ALPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNAL-TNLPE 384 (754)
T ss_pred Cccc-cCCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcC-CCCCH
Confidence 8754 344333 3689999999987664 55444 368999999999999888765 36899999999764 45666
Q ss_pred ccCCCcccceeecCCcccccccHHh----hccCCCCceeeccCC
Q 036017 242 NLGSLRSLKRLHTGKSAISQLPSSI----ADLKQVDGLSFYGCR 281 (283)
Q Consensus 242 ~~~~l~~L~~L~l~~~~i~~~~~~~----~~~~~L~~L~l~~c~ 281 (283)
.+. ..|+.|++++|.++.+|..+ ..++.+..+++.+++
T Consensus 385 ~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 385 NLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred hHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 554 37999999999999777654 345888999998875
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.76 E-value=1.7e-17 Score=148.36 Aligned_cols=214 Identities=21% Similarity=0.225 Sum_probs=127.6
Q ss_pred CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCC
Q 036017 36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTN 115 (283)
Q Consensus 36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 115 (283)
+|++|++++|.+..+|.. .++|+.|++++|.+..++.. ..+|+.|++.+|. ...++. ..++|+.|++++|..
T Consensus 243 ~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~--~p~~L~~LdLS~N~L 314 (788)
T PRK15387 243 ELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQ-LTSLPV--LPPGLQELSVSDNQL 314 (788)
T ss_pred CCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhc---hhhcCEEECcCCc-cccccc--cccccceeECCCCcc
Confidence 555555555555444432 24455555555555444331 2345555665554 223332 235667777766543
Q ss_pred CCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchh
Q 036017 116 LPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGI 195 (283)
Q Consensus 116 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 195 (283)
. .+|. ...+|+.|++++|.+.. +|. .+.+|+.|++++|++. .+|.. ..+|+.|++++|.+. .+|..
T Consensus 315 ~-~Lp~---lp~~L~~L~Ls~N~L~~-LP~----lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l 380 (788)
T PRK15387 315 A-SLPA---LPSELCKLWAYNNQLTS-LPT----LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL 380 (788)
T ss_pred c-cCCC---CcccccccccccCcccc-ccc----cccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc
Confidence 2 2332 12245566666665432 442 2246778888776644 33322 346677777775554 34432
Q ss_pred hhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccHHhhccCCCCce
Q 036017 196 LENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGL 275 (283)
Q Consensus 196 ~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L 275 (283)
..+|+.|++++|.++.+|.. .++|+.|++++|.. ..+|.. ..+|+.|++++|.++.+|..+.++++|+.|
T Consensus 381 ---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~L-ssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~L 450 (788)
T PRK15387 381 ---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRL-TSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTV 450 (788)
T ss_pred ---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcC-CCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeE
Confidence 35688888888888877753 35788889888764 446543 246788899999999888888889999999
Q ss_pred eeccCC
Q 036017 276 SFYGCR 281 (283)
Q Consensus 276 ~l~~c~ 281 (283)
++++|+
T Consensus 451 dLs~N~ 456 (788)
T PRK15387 451 NLEGNP 456 (788)
T ss_pred ECCCCC
Confidence 998875
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=1.3e-18 Score=144.14 Aligned_cols=267 Identities=18% Similarity=0.173 Sum_probs=184.6
Q ss_pred eEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCc-----cCCCC-CCCcceEEecCCCCccc-------c
Q 036017 6 LLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRT-----LPTNL-STDKLVVLNLPCSNVEL-------L 72 (283)
Q Consensus 6 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~-~~~~L~~l~l~~~~~~~-------~ 72 (283)
.|+++.+.+++. .+...+..++ +|+.|+++++.+.. ++... ..+.++.++++++.+.. +
T Consensus 2 ~l~L~~~~l~~~-------~~~~~~~~l~-~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~ 73 (319)
T cd00116 2 QLSLKGELLKTE-------RATELLPKLL-CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSL 73 (319)
T ss_pred ccccccCccccc-------chHHHHHHHh-hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHH
Confidence 466666666532 4455667777 89999999998722 33333 66789999998876652 2
Q ss_pred hhhhhccCCccEEEccCCCCCCCCC-CCCCC---CCCcEEeeeCCCCCC----cchhhccCC-CCCcEEEecCCCCcCC-
Q 036017 73 WEEKKEAFKLKSVDLCNSQNLTRMP-DLSET---PNLERMYLLNCTNLP----FISSSIENL-NNLSMLRLEGCKILGP- 142 (283)
Q Consensus 73 ~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~---~~L~~L~l~~~~~~~----~~~~~~~~~-~~L~~L~l~~~~~~~~- 142 (283)
+..+..+++|+.|+++++......+ .+..+ ++|+.|++++|.... .+...+..+ ++|+++++++|.+.+.
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 3456678899999999887653322 22222 569999999987553 233345666 8999999999987632
Q ss_pred ---ChhHhhcCCCccCEEeccCCcCccc----chhhhcCCCCCCeEeecCCCCCCC----CchhhhcCCCCcEEeecCCC
Q 036017 143 ---FPAFISLSLTNLEVLDLAHCKRLNR----LSASICKLKSLSWLRLYNCSKLES----FPGILENMARLEYIDLRLTA 211 (283)
Q Consensus 143 ---~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~ 211 (283)
+...+. .+++|+.|++++|.+.+. ++..+...++|++|++++|.+.+. +...+..+++|++|++++|.
T Consensus 154 ~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 154 CEALAKALR-ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHHHHH-hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 223343 667899999999876532 333455667999999999877643 33455678899999999998
Q ss_pred ccc--cchhhhc----CCCccEEecccccCC----CCCccccCCCcccceeecCCccccc-----ccHHhhcc-CCCCce
Q 036017 212 IKE--LPSSVEH----LEGLKELRMEYCYKL----SKLPDNLGSLRSLKRLHTGKSAISQ-----LPSSIADL-KQVDGL 275 (283)
Q Consensus 212 l~~--~~~~~~~----~~~L~~L~l~~~~~~----~~l~~~~~~l~~L~~L~l~~~~i~~-----~~~~~~~~-~~L~~L 275 (283)
++. +...... .+.|+.|++++|... ..+...+..+++|+.+++++|.++. +...+... +.++++
T Consensus 233 l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~ 312 (319)
T cd00116 233 LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESL 312 (319)
T ss_pred CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhc
Confidence 873 2222222 478999999998654 2334456667899999999999982 33344444 688999
Q ss_pred eeccCC
Q 036017 276 SFYGCR 281 (283)
Q Consensus 276 ~l~~c~ 281 (283)
++.+.+
T Consensus 313 ~~~~~~ 318 (319)
T cd00116 313 WVKDDS 318 (319)
T ss_pred ccCCCC
Confidence 887654
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=1.1e-17 Score=138.77 Aligned_cols=241 Identities=21% Similarity=0.186 Sum_probs=169.9
Q ss_pred EEecCCCCC--ccCCCC-CCCcceEEecCCCCcc-----cchhhhhccCCccEEEccCCCCCC--C----C-CCCCCCCC
Q 036017 40 LHWHGYPLR--TLPTNL-STDKLVVLNLPCSNVE-----LLWEEKKEAFKLKSVDLCNSQNLT--R----M-PDLSETPN 104 (283)
Q Consensus 40 L~l~~~~~~--~~~~~~-~~~~L~~l~l~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~~~--~----~-~~~~~~~~ 104 (283)
|++..+.+. .....+ .+..|+.++++++.+. .++..+...++++.+++.++.... . + ..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 445555542 222222 5677999999999884 355556677889999998876442 1 1 13566889
Q ss_pred CcEEeeeCCCCCCcchhhccCC---CCCcEEEecCCCCcCC----ChhHhhcCC-CccCEEeccCCcCcc----cchhhh
Q 036017 105 LERMYLLNCTNLPFISSSIENL---NNLSMLRLEGCKILGP----FPAFISLSL-TNLEVLDLAHCKRLN----RLSASI 172 (283)
Q Consensus 105 L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~----~~~~~~~~~-~~L~~L~l~~~~~~~----~~~~~l 172 (283)
|+.|++++|......+..+..+ ++|++|++++|.+.+. +...+. .+ ++|+.|++++|.+.. .+...+
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 9999999987765444444444 4599999999987632 122333 55 899999999998763 234456
Q ss_pred cCCCCCCeEeecCCCCCCC----CchhhhcCCCCcEEeecCCCcc-----ccchhhhcCCCccEEecccccCCCCCcccc
Q 036017 173 CKLKSLSWLRLYNCSKLES----FPGILENMARLEYIDLRLTAIK-----ELPSSVEHLEGLKELRMEYCYKLSKLPDNL 243 (283)
Q Consensus 173 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~ 243 (283)
..+++|++|++++|.+.+. ++..+...++|+++++++|.++ .+...+..+++|+.|++++|.........+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 6788999999999887753 2233455679999999999886 344556788999999999987553111111
Q ss_pred -----CCCcccceeecCCcccc-----cccHHhhccCCCCceeeccCC
Q 036017 244 -----GSLRSLKRLHTGKSAIS-----QLPSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 244 -----~~l~~L~~L~l~~~~i~-----~~~~~~~~~~~L~~L~l~~c~ 281 (283)
...+.|+.|++++|.++ .+...+..+++|+++++++|.
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 12479999999999986 445566777899999998874
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.70 E-value=5.8e-19 Score=154.82 Aligned_cols=244 Identities=23% Similarity=0.273 Sum_probs=193.9
Q ss_pred CCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEe
Q 036017 31 DYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMY 109 (283)
Q Consensus 31 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~ 109 (283)
..-| +++.|....|.+.+....+--.+|++++++.+++..+|+++..+.+|+.+.+.+|.. ..++ .+....+|+.+.
T Consensus 216 ~~g~-~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~ 293 (1081)
T KOG0618|consen 216 ISGP-SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLS 293 (1081)
T ss_pred ecCc-chheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHH
Confidence 3345 777777777777654444445789999999999999998889999999999998875 3444 566778888888
Q ss_pred eeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCC-CccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCC
Q 036017 110 LLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSL-TNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSK 188 (283)
Q Consensus 110 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 188 (283)
...|. +..+|.....+..|++|++..|.+. .+|..+..-. .+++.+..+.++........=...+.|+.|++.+|.+
T Consensus 294 ~~~ne-l~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L 371 (1081)
T KOG0618|consen 294 AAYNE-LEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL 371 (1081)
T ss_pred hhhhh-hhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence 88764 4667777788999999999998864 4665443122 2367777776654333211122466799999999999
Q ss_pred CCCCchhhhcCCCCcEEeecCCCccccchh-hhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccHHhh
Q 036017 189 LESFPGILENMARLEYIDLRLTAIKELPSS-VEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIA 267 (283)
Q Consensus 189 ~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~ 267 (283)
++..-+.+.+..+|+.|++++|++..+|+. +.+++.|++|+++||. ++.+|+.+..+..|++|...+|.+..+| .+.
T Consensus 372 td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~ 449 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQLLSFP-ELA 449 (1081)
T ss_pred cccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCceeech-hhh
Confidence 988778889999999999999999999987 5899999999999964 6778899999999999999999999999 688
Q ss_pred ccCCCCceeeccC
Q 036017 268 DLKQVDGLSFYGC 280 (283)
Q Consensus 268 ~~~~L~~L~l~~c 280 (283)
++++|+.+|++.+
T Consensus 450 ~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCN 462 (1081)
T ss_pred hcCcceEEecccc
Confidence 9999999999866
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.65 E-value=1.7e-15 Score=135.66 Aligned_cols=217 Identities=21% Similarity=0.208 Sum_probs=161.0
Q ss_pred CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCC
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFK 81 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~ 81 (283)
++|++|++++|.++ .+|. .|.+|+.|++.+|.+..++.. ...|+.|++++|.+..+|.. .++
T Consensus 242 ~~Lk~LdLs~N~Lt---------sLP~----lp~sL~~L~Ls~N~L~~Lp~l--p~~L~~L~Ls~N~Lt~LP~~---p~~ 303 (788)
T PRK15387 242 PELRTLEVSGNQLT---------SLPV----LPPGLLELSIFSNPLTHLPAL--PSGLCKLWIFGNQLTSLPVL---PPG 303 (788)
T ss_pred CCCcEEEecCCccC---------cccC----cccccceeeccCCchhhhhhc--hhhcCEEECcCCcccccccc---ccc
Confidence 56788888877766 3443 233899999999998877764 46788999999999988753 578
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccC
Q 036017 82 LKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAH 161 (283)
Q Consensus 82 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 161 (283)
|+.|++++|... .++.+ ..+|+.|++++|.. ..+|. ...+|++|++++|.+.. +|. .+++|+.|++++
T Consensus 304 L~~LdLS~N~L~-~Lp~l--p~~L~~L~Ls~N~L-~~LP~---lp~~Lq~LdLS~N~Ls~-LP~----lp~~L~~L~Ls~ 371 (788)
T PRK15387 304 LQELSVSDNQLA-SLPAL--PSELCKLWAYNNQL-TSLPT---LPSGLQELSVSDNQLAS-LPT----LPSELYKLWAYN 371 (788)
T ss_pred cceeECCCCccc-cCCCC--cccccccccccCcc-ccccc---cccccceEecCCCccCC-CCC----CCcccceehhhc
Confidence 999999998743 45432 24688888888754 34442 12479999999988754 553 345788899988
Q ss_pred CcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCcc
Q 036017 162 CKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPD 241 (283)
Q Consensus 162 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~ 241 (283)
|.+. .+|.. ..+|+.|++++|.+.. +|.. .++|+.|++++|.++.+|.. ..+|+.|++++|. ++.+|.
T Consensus 372 N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~Nq-Lt~LP~ 439 (788)
T PRK15387 372 NRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQ-LTRLPE 439 (788)
T ss_pred cccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCc-ccccCh
Confidence 7654 34432 3578999999977663 4432 36799999999999988754 3467889998865 557888
Q ss_pred ccCCCcccceeecCCcccc
Q 036017 242 NLGSLRSLKRLHTGKSAIS 260 (283)
Q Consensus 242 ~~~~l~~L~~L~l~~~~i~ 260 (283)
.+..+++|+.+++++|.++
T Consensus 440 sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 440 SLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred HHhhccCCCeEECCCCCCC
Confidence 8889999999999999988
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.64 E-value=1.2e-15 Score=137.00 Aligned_cols=225 Identities=18% Similarity=0.282 Sum_probs=167.2
Q ss_pred CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCC
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFK 81 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~ 81 (283)
++|+.|++++|.++ .+|..+ .+ +|++|++++|.+..+|... .+.|+.|++++|.+..+|..+. .+
T Consensus 199 ~~L~~L~Ls~N~Lt---------sLP~~l--~~-nL~~L~Ls~N~LtsLP~~l-~~~L~~L~Ls~N~L~~LP~~l~--s~ 263 (754)
T PRK15370 199 EQITTLILDNNELK---------SLPENL--QG-NIKTLYANSNQLTSIPATL-PDTIQEMELSINRITELPERLP--SA 263 (754)
T ss_pred cCCcEEEecCCCCC---------cCChhh--cc-CCCEEECCCCccccCChhh-hccccEEECcCCccCcCChhHh--CC
Confidence 46889999999887 455543 25 8999999999998887654 3589999999999998887653 58
Q ss_pred ccEEEccCCCCCCCCCC-CCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEecc
Q 036017 82 LKSVDLCNSQNLTRMPD-LSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLA 160 (283)
Q Consensus 82 L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 160 (283)
|+.|++++|... .+|. + .++|+.|++++|.+. .+|..+ .++|+.|++++|.+.. +|..+ +++|+.|+++
T Consensus 264 L~~L~Ls~N~L~-~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l--p~sL~~L~Ls~N~Lt~-LP~~l---~~sL~~L~Ls 333 (754)
T PRK15370 264 LQSLDLFHNKIS-CLPENL--PEELRYLSVYDNSIR-TLPAHL--PSGITHLNVQSNSLTA-LPETL---PPGLKTLEAG 333 (754)
T ss_pred CCEEECcCCccC-cccccc--CCCCcEEECCCCccc-cCcccc--hhhHHHHHhcCCcccc-CCccc---cccceecccc
Confidence 999999988744 4553 3 358999999997643 444332 2468889999988654 55443 3689999999
Q ss_pred CCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCc
Q 036017 161 HCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLP 240 (283)
Q Consensus 161 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~ 240 (283)
+|.+.. +|..+ .++|+.|++++|.+. .+|..+ .++|+.|++++|.++.+|..+. ..|+.|++++|... .+|
T Consensus 334 ~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~-~LP 404 (754)
T PRK15370 334 ENALTS-LPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLV-RLP 404 (754)
T ss_pred CCcccc-CChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcc-cCc
Confidence 987543 45444 368999999998765 355444 3689999999999998887654 36889999987654 555
Q ss_pred ccc----CCCcccceeecCCcccc
Q 036017 241 DNL----GSLRSLKRLHTGKSAIS 260 (283)
Q Consensus 241 ~~~----~~l~~L~~L~l~~~~i~ 260 (283)
..+ ..++.+..+++.+|.++
T Consensus 405 ~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 405 ESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hhHHHHhhcCCCccEEEeeCCCcc
Confidence 543 34577889999999886
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.9e-17 Score=118.61 Aligned_cols=170 Identities=20% Similarity=0.270 Sum_probs=126.6
Q ss_pred CccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCC
Q 036017 48 RTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLN 127 (283)
Q Consensus 48 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 127 (283)
..++..+++.+++.+.+++|.+..+|..++.+.+|+.|++.+|++....+.+..+++|+.|+++-+ .....|..++.+|
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p 102 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFP 102 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCc
Confidence 344455567777777778888777777777777888888877774443346777888888887764 3456777888888
Q ss_pred CCcEEEecCCCCcC-CChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEe
Q 036017 128 NLSMLRLEGCKILG-PFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYID 206 (283)
Q Consensus 128 ~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 206 (283)
.|++|++.+|.+.. .+|..+. .++.|+.|++++|.+ +.+|..++.+.+|+.|.+..+... ++|..++.+..|+.++
T Consensus 103 ~levldltynnl~e~~lpgnff-~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFF-YMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELH 179 (264)
T ss_pred hhhhhhccccccccccCCcchh-HHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHh
Confidence 88888888877653 4676666 788888888888653 566777888888888888886665 3777888888888888
Q ss_pred ecCCCccccchhhhc
Q 036017 207 LRLTAIKELPSSVEH 221 (283)
Q Consensus 207 l~~~~l~~~~~~~~~ 221 (283)
+.+|.++.+|..++.
T Consensus 180 iqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 180 IQGNRLTVLPPELAN 194 (264)
T ss_pred cccceeeecChhhhh
Confidence 888888877766554
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=6e-17 Score=116.09 Aligned_cols=164 Identities=23% Similarity=0.293 Sum_probs=107.5
Q ss_pred hhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccC
Q 036017 76 KKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLE 155 (283)
Q Consensus 76 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 155 (283)
+..+.+++.|.+++|+....-|.++.+.+|+.|++++++ +..+|..++.+++|+.|+++.|.+. ..|..+. .+|-|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~-~lprgfg-s~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLN-ILPRGFG-SFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhh-cCccccC-CCchhh
Confidence 445667777777777744444467777777777777654 4567777777777777777766543 3666666 777777
Q ss_pred EEeccCCcCcc-cchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEeccccc
Q 036017 156 VLDLAHCKRLN-RLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCY 234 (283)
Q Consensus 156 ~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~ 234 (283)
.||+++|+..+ .+|..+-.+..|+-|+++.+.+. .+|+..+++.+|+.+.+.+|.+.++|..++.+..|++|.+.+|+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence 77777766543 45555555666777777664443 35566667777777777777777777777777777777777654
Q ss_pred CCCCCccccC
Q 036017 235 KLSKLPDNLG 244 (283)
Q Consensus 235 ~~~~l~~~~~ 244 (283)
. +-+|..++
T Consensus 185 l-~vlppel~ 193 (264)
T KOG0617|consen 185 L-TVLPPELA 193 (264)
T ss_pred e-eecChhhh
Confidence 3 33444433
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.55 E-value=3.6e-16 Score=125.60 Aligned_cols=250 Identities=18% Similarity=0.192 Sum_probs=170.7
Q ss_pred CCcccCceEEEecCCCCCccCCCC--CCCcceEEecCCCCcccc-hhhhhccCCccEEEccCCCCCCCCC--CCCCCCCC
Q 036017 31 DYLPEELRYLHWHGYPLRTLPTNL--STDKLVVLNLPCSNVELL-WEEKKEAFKLKSVDLCNSQNLTRMP--DLSETPNL 105 (283)
Q Consensus 31 ~~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L 105 (283)
.++|.....|.+..|++..+|+.. .+++|+.|++++|+|..+ ++.+.+++.+..|-+.++..++.++ .|+.+.+|
T Consensus 63 ~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 456778999999999999998865 899999999999999965 5678889999888888855577776 58889999
Q ss_pred cEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCccc------------chhhhc
Q 036017 106 ERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNR------------LSASIC 173 (283)
Q Consensus 106 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------------~~~~l~ 173 (283)
+.|.+.-+...-.....++.++++..|.+.+|.+.. ++....+.+..++.+.+..+.+... .+...+
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~-i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQS-ICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhh-hccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 998887665444555678889999999999886533 4443333566677776666553210 010111
Q ss_pred CCCC----------------------CCeE---eecCCCCCCCCc-hhhhcCCCCcEEeecCCCccccchh-hhcCCCcc
Q 036017 174 KLKS----------------------LSWL---RLYNCSKLESFP-GILENMARLEYIDLRLTAIKELPSS-VEHLEGLK 226 (283)
Q Consensus 174 ~~~~----------------------L~~L---~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~ 226 (283)
+.+- ++.+ -.+.|......| .-|.++++|+++++++|+++.+.+. +.....++
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~ 301 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ 301 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence 1111 1111 111122222233 3467788899999999988866554 57778888
Q ss_pred EEecccccCCCCCccccCCCcccceeecCCcccccc-cHHhhccCCCCceeeccCC
Q 036017 227 ELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQL-PSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 227 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~c~ 281 (283)
+|.+.+|.....-...+..+.+|+.|++.+|+|+.+ |..+.....|.+|++..++
T Consensus 302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 888888654432234467788888888888888844 4566677778888776654
No 22
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.42 E-value=3.1e-13 Score=107.31 Aligned_cols=180 Identities=22% Similarity=0.260 Sum_probs=104.4
Q ss_pred CCCCCcEEeeeCCCCCCcch----hhccCCCCCcEEEecCCCCcCCChh-------------HhhcCCCccCEEeccCCc
Q 036017 101 ETPNLERMYLLNCTNLPFIS----SSIENLNNLSMLRLEGCKILGPFPA-------------FISLSLTNLEVLDLAHCK 163 (283)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~-------------~~~~~~~~L~~L~l~~~~ 163 (283)
.+|+|+.++++.|.+-...+ ..+.++..|++|.+++|.+...-.. .++ ..+.|+.+...+|+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~-~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAA-SKPKLRVFICGRNR 168 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccC-CCcceEEEEeeccc
Confidence 44556666665554433222 2234555666666665544321111 111 45667777777766
Q ss_pred Cccc----chhhhcCCCCCCeEeecCCCCCCC----CchhhhcCCCCcEEeecCCCcc-----ccchhhhcCCCccEEec
Q 036017 164 RLNR----LSASICKLKSLSWLRLYNCSKLES----FPGILENMARLEYIDLRLTAIK-----ELPSSVEHLEGLKELRM 230 (283)
Q Consensus 164 ~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~l~-----~~~~~~~~~~~L~~L~l 230 (283)
+... +...+...+.|+.+.+..|.+... +...+..+++|++||+.+|.++ .+...+..+++|+.|++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 5332 333455667777777777665432 2345667778888888877776 34455667777888888
Q ss_pred ccccCCCCCc----ccc-CCCcccceeecCCcccc-----cccHHhhccCCCCceeeccCC
Q 036017 231 EYCYKLSKLP----DNL-GSLRSLKRLHTGKSAIS-----QLPSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 231 ~~~~~~~~l~----~~~-~~l~~L~~L~l~~~~i~-----~~~~~~~~~~~L~~L~l~~c~ 281 (283)
+.|..-..-. ..+ ...|+|+++.+.+|.|+ .+..++...|.|..|++.+|.
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 8776543211 111 23577888888888776 333455567777777777764
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.39 E-value=4.3e-15 Score=119.49 Aligned_cols=244 Identities=18% Similarity=0.123 Sum_probs=121.8
Q ss_pred eEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCC--CCCcceEEecCC-CCcccchhh-hhccCC
Q 036017 6 LLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNL--STDKLVVLNLPC-SNVELLWEE-KKEAFK 81 (283)
Q Consensus 6 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~-~~~~~~~~~-l~~~~~ 81 (283)
.+.+..|.++. ..+.+++.++ +|++|++++|.++.+.+.. ++..+..+-+-+ |+|+.+++. +.++..
T Consensus 71 eirLdqN~I~~--------iP~~aF~~l~-~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 71 EIRLDQNQISS--------IPPGAFKTLH-RLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred EEEeccCCccc--------CChhhccchh-hhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 46666777663 3345788899 9999999999987776544 777777766655 788877643 444555
Q ss_pred ccEEEccCCCCCCCCC--CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCC---------------------
Q 036017 82 LKSVDLCNSQNLTRMP--DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCK--------------------- 138 (283)
Q Consensus 82 L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--------------------- 138 (283)
++.|.+.-+. ...+. .+..+++|..|.+..+......-..+..+.+++.+.+..|.
T Consensus 142 lqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 142 LQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred HHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 5555544333 22222 23444444444443322111111112222222222222111
Q ss_pred ---------------CcCCChhHhhcCCCccCEEeccCCcCcccch-hhhcCCCCCCeEeecCCCCCCCCchhhhcCCCC
Q 036017 139 ---------------ILGPFPAFISLSLTNLEVLDLAHCKRLNRLS-ASICKLKSLSWLRLYNCSKLESFPGILENMARL 202 (283)
Q Consensus 139 ---------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 202 (283)
+...-+.-+.....++.+--.+.+.....-| ..++.+++|+.|++++|+++.....+|.+..++
T Consensus 221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l 300 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL 300 (498)
T ss_pred ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence 0000000000011111111111111111111 225556666666666666665555666666666
Q ss_pred cEEeecCCCccccchh-hhcCCCccEEecccccCCCCCccccCCCcccceeecCCccc
Q 036017 203 EYIDLRLTAIKELPSS-VEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAI 259 (283)
Q Consensus 203 ~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i 259 (283)
+.|.+..|.+..+... +..+..|++|++.+|+...-.|-.|..+.+|.+|.+-.|.+
T Consensus 301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 6666666666644333 45666666666666655555555566666666666555443
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.8e-13 Score=111.55 Aligned_cols=202 Identities=19% Similarity=0.170 Sum_probs=127.7
Q ss_pred hccCCccEEEccCCCCCCCCC--CCCCCCCCcEEeeeCCCCCCc--chhhccCCCCCcEEEecCCCCcCCChhHhhcCCC
Q 036017 77 KEAFKLKSVDLCNSQNLTRMP--DLSETPNLERMYLLNCTNLPF--ISSSIENLNNLSMLRLEGCKILGPFPAFISLSLT 152 (283)
Q Consensus 77 ~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 152 (283)
.++.+|+.+.+.++....... ....|+++++|+++.|-+... +...+..+|+|+.|+++.|.+.-......-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 356777777777665332221 355688888888887644432 3345678888888888887765433333322567
Q ss_pred ccCEEeccCCcCcc-cchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccch--hhhcCCCccEEe
Q 036017 153 NLEVLDLAHCKRLN-RLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPS--SVEHLEGLKELR 229 (283)
Q Consensus 153 ~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~--~~~~~~~L~~L~ 229 (283)
+|+.|.++.|.+.. .+...+..+|+|++|++..|...........-+..|+.||+++|.+..++. ..+.++.|.+|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 88888888887653 333345568888888888775332222333455678888888888776663 357788888888
Q ss_pred cccccCCC-CCccc-----cCCCcccceeecCCccccccc--HHhhccCCCCceeec
Q 036017 230 MEYCYKLS-KLPDN-----LGSLRSLKRLHTGKSAISQLP--SSIADLKQVDGLSFY 278 (283)
Q Consensus 230 l~~~~~~~-~l~~~-----~~~l~~L~~L~l~~~~i~~~~--~~~~~~~~L~~L~l~ 278 (283)
++.|...+ ..|+. ...+++|+.|+++.|.|.+++ ..+...++|+.|.+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 88765442 22332 345678888888888886543 234455556655543
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.35 E-value=3.7e-13 Score=106.86 Aligned_cols=228 Identities=18% Similarity=0.130 Sum_probs=135.6
Q ss_pred CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCC----ccCC--------CCCCCcceEEecCCCCc
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLR----TLPT--------NLSTDKLVVLNLPCSNV 69 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~--------~~~~~~L~~l~l~~~~~ 69 (283)
..+.++++++|.|... .+..+...+.+.+ .|+..++++.-.+ .+|. ..++++|+.+++++|.+
T Consensus 30 ~s~~~l~lsgnt~G~E----Aa~~i~~~L~~~~-~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTE----AARAIAKVLASKK-ELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred CceEEEeccCCchhHH----HHHHHHHHHhhcc-cceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 4566777777766532 1223344566667 7777777765432 2221 11567888888888876
Q ss_pred c-----cchhhhhccCCccEEEccCCCCCCCCC--------------CCCCCCCCcEEeeeCCCCCC----cchhhccCC
Q 036017 70 E-----LLWEEKKEAFKLKSVDLCNSQNLTRMP--------------DLSETPNLERMYLLNCTNLP----FISSSIENL 126 (283)
Q Consensus 70 ~-----~~~~~l~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~ 126 (283)
. .+...+..+..|++|.+.+|..-..-. ..+.-++|+.+..++|..-. .+...+..+
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 6 233445567778888887776322210 13445677777777765433 233455667
Q ss_pred CCCcEEEecCCCCcCCCh----hHhhcCCCccCEEeccCCcCcc----cchhhhcCCCCCCeEeecCCCCCCCCc----h
Q 036017 127 NNLSMLRLEGCKILGPFP----AFISLSLTNLEVLDLAHCKRLN----RLSASICKLKSLSWLRLYNCSKLESFP----G 194 (283)
Q Consensus 127 ~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~----~ 194 (283)
+.|+.+.+..|.+...-. ..+. ++++|+.||+.+|.+.. .+...+..+++|+++++++|.+...-. .
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~-~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALE-HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHH-hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 778888777776543211 1223 67788888888776542 234456667778888888777654322 1
Q ss_pred hhh-cCCCCcEEeecCCCcc-----ccchhhhcCCCccEEecccccC
Q 036017 195 ILE-NMARLEYIDLRLTAIK-----ELPSSVEHLEGLKELRMEYCYK 235 (283)
Q Consensus 195 ~~~-~~~~L~~l~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~ 235 (283)
.+. ..++|+++.+.+|.++ .+.......+.|..|++++|..
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 122 3567777777777776 1222334567777777777665
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.34 E-value=4.3e-14 Score=114.59 Aligned_cols=274 Identities=19% Similarity=0.240 Sum_probs=181.2
Q ss_pred CceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCC-Cc--cCCCC-CCCcceEEecCCC-Ccccch-h-h
Q 036017 3 NLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPL-RT--LPTNL-STDKLVVLNLPCS-NVELLW-E-E 75 (283)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~--~~~~~-~~~~L~~l~l~~~-~~~~~~-~-~ 75 (283)
.||.|+++++.-.++ ..+-.+...+| +++.|.+.+|.. ++ +.... .+++|+++++..| .++... . -
T Consensus 139 ~lk~LSlrG~r~v~~------sslrt~~~~Cp-nIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGD------SSLRTFASNCP-NIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred ccccccccccccCCc------chhhHHhhhCC-chhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence 467777777765543 25556677788 888888888773 11 11122 6788888888874 454321 2 2
Q ss_pred hhccCCccEEEccCCCCCCC--CC-CCCCCCCCcEEeeeCCCCCCc--chhhccCCCCCcEEEecCCCCcCCCh-hHhhc
Q 036017 76 KKEAFKLKSVDLCNSQNLTR--MP-DLSETPNLERMYLLNCTNLPF--ISSSIENLNNLSMLRLEGCKILGPFP-AFISL 149 (283)
Q Consensus 76 l~~~~~L~~L~l~~~~~~~~--~~-~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~ 149 (283)
...+++|++++++.|..+.. +. ....+..++.+...+|..... +...-..++-+..+++..|...++.. -.+..
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 34578888888887765443 22 234566677776666654432 22233455556666766665433322 23333
Q ss_pred CCCccCEEeccCCcCcccchh-hh-cCCCCCCeEeecCCCCCCC--CchhhhcCCCCcEEeecCCCcc---ccchhhhcC
Q 036017 150 SLTNLEVLDLAHCKRLNRLSA-SI-CKLKSLSWLRLYNCSKLES--FPGILENMARLEYIDLRLTAIK---ELPSSVEHL 222 (283)
Q Consensus 150 ~~~~L~~L~l~~~~~~~~~~~-~l-~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~l~l~~~~l~---~~~~~~~~~ 222 (283)
.+..|+.++.+++...+..+- .+ .++.+|+.+.+.+|...+. +...-.+++.|+.+++..+... .+.....++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 577899999988866544332 33 3688999999999885443 2233456788999999988765 355556789
Q ss_pred CCccEEecccccCCCCC-----ccccCCCcccceeecCCcccc--cccHHhhccCCCCceeeccCCCC
Q 036017 223 EGLKELRMEYCYKLSKL-----PDNLGSLRSLKRLHTGKSAIS--QLPSSIADLKQVDGLSFYGCRGL 283 (283)
Q Consensus 223 ~~L~~L~l~~~~~~~~l-----~~~~~~l~~L~~L~l~~~~i~--~~~~~~~~~~~L~~L~l~~c~~l 283 (283)
+.|+.+.+++|..+++- ......+.++..+.++++..+ ..-..+..|++|+.+++.+|+.+
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 99999999999877543 344567788999999998755 55567789999999999999753
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.27 E-value=1.1e-12 Score=102.45 Aligned_cols=198 Identities=19% Similarity=0.169 Sum_probs=131.4
Q ss_pred hhhhhccCCccEEEccCCCCCCCCCC-CCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCC---CcCCChhHhh
Q 036017 73 WEEKKEAFKLKSVDLCNSQNLTRMPD-LSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCK---ILGPFPAFIS 148 (283)
Q Consensus 73 ~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~ 148 (283)
+..+..+.+|+.+.++.|. ...+.. ...-|.|+++.+.+.... ..+.- -.... ..+..+.. ..+.....+.
T Consensus 207 ~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~~~-~~~~l-~pe~~--~~D~~~~E~~t~~G~~~~~~d 281 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTTIQ-DVPSL-LPETI--LADPSGSEPSTSNGSALVSAD 281 (490)
T ss_pred ccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeeccccc-ccccc-cchhh--hcCccCCCCCccCCceEEecc
Confidence 3345567788888888876 333332 344578888888764322 11110 00111 11222111 1122223333
Q ss_pred cCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEE
Q 036017 149 LSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKEL 228 (283)
Q Consensus 149 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L 228 (283)
.|+.|+.+|+++|. +..+.++..-.|.++.|+++.|.+... ..+..+++|+.||+++|.++.+..+-..+.+.++|
T Consensus 282 -TWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 -TWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred -hHhhhhhccccccc-hhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 67789999999876 445555667788999999998777643 23677889999999999998776666788889999
Q ss_pred ecccccCCCCCccccCCCcccceeecCCcccccc--cHHhhccCCCCceeeccCC
Q 036017 229 RMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQL--PSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 229 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~--~~~~~~~~~L~~L~l~~c~ 281 (283)
.+++|. +..+ +.+.++-+|..||+++|+|..+ .+.++++|+|+.+.+.++|
T Consensus 358 ~La~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 358 KLAQNK-IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ehhhhh-Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 999854 3333 4567788899999999998833 3568899999999888876
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.2e-12 Score=103.74 Aligned_cols=204 Identities=19% Similarity=0.202 Sum_probs=144.7
Q ss_pred CCcccCceEEEecCCCCCccCC--C-CCCCcceEEecCCCCccc---chhhhhccCCccEEEccCCCCCCCCCC--CCCC
Q 036017 31 DYLPEELRYLHWHGYPLRTLPT--N-LSTDKLVVLNLPCSNVEL---LWEEKKEAFKLKSVDLCNSQNLTRMPD--LSET 102 (283)
Q Consensus 31 ~~~~~~L~~L~l~~~~~~~~~~--~-~~~~~L~~l~l~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~ 102 (283)
.++. +|+.+.+.++.++..+. . ..|++++.|+++.|-+.. +...+..+|+|+.|+++.|........ -..+
T Consensus 118 sn~k-kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLK-KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHH-hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 3456 89999999998766553 2 279999999999997763 334456689999999999875544443 2468
Q ss_pred CCCcEEeeeCCCCCC-cchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccc-hhhhcCCCCCCe
Q 036017 103 PNLERMYLLNCTNLP-FISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRL-SASICKLKSLSW 180 (283)
Q Consensus 103 ~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~ 180 (283)
++|+.|.++.|.+.- .+...+..+|++++|++.+|.....-..... .++.|+.|++++|.+.... ...++.++.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~-i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK-ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh-hhhHHhhccccCCcccccccccccccccchhh
Confidence 899999999987653 2444567899999999998852211111111 4578999999998876542 234677889999
Q ss_pred EeecCCCCCCC-Cch-----hhhcCCCCcEEeecCCCccccch--hhhcCCCccEEecccccCC
Q 036017 181 LRLYNCSKLES-FPG-----ILENMARLEYIDLRLTAIKELPS--SVEHLEGLKELRMEYCYKL 236 (283)
Q Consensus 181 L~l~~~~~~~~-~~~-----~~~~~~~L~~l~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~ 236 (283)
|+++.|.+..- .++ ....+++|++|++..|.+..|++ .+..+++|+.|.+.++...
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 99988776542 222 13467889999999999986654 3567778888887766544
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=4.4e-13 Score=112.83 Aligned_cols=211 Identities=22% Similarity=0.244 Sum_probs=152.7
Q ss_pred EEEecCCCCCccCCCC---CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCC
Q 036017 39 YLHWHGYPLRTLPTNL---STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTN 115 (283)
Q Consensus 39 ~L~l~~~~~~~~~~~~---~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 115 (283)
.|.+++-.+..+|... .+..-...+++.|.+..+|..+..+..|+.+.++.|.+-....++.++..|+.++++.|+
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq- 132 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ- 132 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-
Confidence 4555555555555433 556666778888889888887777888888888877644333478888888899988865
Q ss_pred CCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchh
Q 036017 116 LPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGI 195 (283)
Q Consensus 116 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 195 (283)
...+|..+..++ |++|-++.|++ +.+|..+. ..++|..||.+.|.+ ..++..++++.+|+.|.+..|.+.+ +|..
T Consensus 133 lS~lp~~lC~lp-Lkvli~sNNkl-~~lp~~ig-~~~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~l~~-lp~E 207 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSNNKL-TSLPEEIG-LLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNHLED-LPEE 207 (722)
T ss_pred hhcCChhhhcCc-ceeEEEecCcc-ccCCcccc-cchhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhhhhh-CCHH
Confidence 456676766665 78888888875 44787777 788888899888764 4556677888888888888866654 5666
Q ss_pred hhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCcccc---CCCcccceeecCCc
Q 036017 196 LENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNL---GSLRSLKRLHTGKS 257 (283)
Q Consensus 196 ~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~---~~l~~L~~L~l~~~ 257 (283)
+..++ |..||++.|++..+|..+.+++.|++|-|.+|+... .|..+ ++..-.++|++..|
T Consensus 208 l~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 208 LCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred HhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence 66444 888889889888888888888889999888877554 33332 34455667776666
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.18 E-value=1.6e-12 Score=109.48 Aligned_cols=211 Identities=23% Similarity=0.329 Sum_probs=157.1
Q ss_pred EEecCCCCcccchhhhhc--cCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCC
Q 036017 61 VLNLPCSNVELLWEEKKE--AFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGC 137 (283)
Q Consensus 61 ~l~l~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 137 (283)
.+.|++-+++.+|....+ +..-...+++.|. ...+| .+..|..|+.+.+..| ....+|..+..+..|+.++++.|
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNR-FSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccc-cccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccc
Confidence 345555566666643333 3444556666666 33444 5666777888888764 34677778888889999999988
Q ss_pred CCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccch
Q 036017 138 KILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPS 217 (283)
Q Consensus 138 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~ 217 (283)
++.. +|..++ .++ |+.|.+++|+ .+.+|..++..++|.+|+.+.|.+.. ++..++++.+|+.+.+..|++..+|.
T Consensus 132 qlS~-lp~~lC-~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~~lp~ 206 (722)
T KOG0532|consen 132 QLSH-LPDGLC-DLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLEDLPE 206 (722)
T ss_pred hhhc-CChhhh-cCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhhhCCH
Confidence 8654 777775 555 8888888766 56777788888899999998866654 66778888999999999999999998
Q ss_pred hhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccHHh---hccCCCCceeeccC
Q 036017 218 SVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSI---ADLKQVDGLSFYGC 280 (283)
Q Consensus 218 ~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~---~~~~~L~~L~l~~c 280 (283)
.+..++ |..||+++ +.+..+|-.+.+|.+||+|.|.+|.++.-|..+ +...-.|+|++..|
T Consensus 207 El~~Lp-Li~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 207 ELCSLP-LIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred HHhCCc-eeeeeccc-CceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 888666 88899986 456778888999999999999999998766544 44556777777776
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=9.4e-11 Score=87.03 Aligned_cols=106 Identities=32% Similarity=0.304 Sum_probs=21.3
Q ss_pred CCCcceEEecCCCCcccchhhhh-ccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhc-cCCCCCcEE
Q 036017 55 STDKLVVLNLPCSNVELLWEEKK-EAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSI-ENLNNLSML 132 (283)
Q Consensus 55 ~~~~L~~l~l~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L 132 (283)
+..+++.|+++++.+..+.. +. .+.+|+.|++++|. +..++.+..+++|++|++++|... .+...+ ..+|+|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S---TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccccc-hhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 33444555555554444322 22 24445555555544 333344444455555555544322 222122 234555555
Q ss_pred EecCCCCcCCC-hhHhhcCCCccCEEeccCCcC
Q 036017 133 RLEGCKILGPF-PAFISLSLTNLEVLDLAHCKR 164 (283)
Q Consensus 133 ~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~ 164 (283)
++++|.+.+.- ...+. .+++|+.|++.+|++
T Consensus 94 ~L~~N~I~~l~~l~~L~-~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLS-SLPKLRVLSLEGNPV 125 (175)
T ss_dssp E-TTS---SCCCCGGGG-G-TT--EEE-TT-GG
T ss_pred ECcCCcCCChHHhHHHH-cCCCcceeeccCCcc
Confidence 55555443210 11222 445555555555443
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=6e-11 Score=88.09 Aligned_cols=124 Identities=29% Similarity=0.393 Sum_probs=46.0
Q ss_pred CceEEEecCCCCCccCCCC-CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC-CC-CCCCCCcEEeeeC
Q 036017 36 ELRYLHWHGYPLRTLPTNL-STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP-DL-SETPNLERMYLLN 112 (283)
Q Consensus 36 ~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~-~~~~~L~~L~l~~ 112 (283)
+++.|++.++.+..+.... .+.+|+.|++++|.+..+. .+..+++|+.|++.+|.+. .+. .+ ..+++|++|++++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TT
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcC
Confidence 6788888888887775544 5778888888888888764 3666788888888887743 343 23 3478888888887
Q ss_pred CCCCCc-chhhccCCCCCcEEEecCCCCcCC--ChhHhhcCCCccCEEeccC
Q 036017 113 CTNLPF-ISSSIENLNNLSMLRLEGCKILGP--FPAFISLSLTNLEVLDLAH 161 (283)
Q Consensus 113 ~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~ 161 (283)
|..... ....+..+++|++|++.+|++... +-..+...+|+|+.||-..
T Consensus 98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 98 NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 654331 224566788888888888887642 1122222788888887654
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.11 E-value=3.5e-11 Score=94.25 Aligned_cols=127 Identities=22% Similarity=0.193 Sum_probs=62.0
Q ss_pred CCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeE
Q 036017 102 TPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWL 181 (283)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 181 (283)
+..|+++++++|. +..+-..+.-.|.++.|++++|.+.. +. .+. .+++|+.||+++|.. .....+-..+-+++.|
T Consensus 283 Wq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa-~L~~L~~LDLS~N~L-s~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRT-VQ-NLA-ELPQLQLLDLSGNLL-AECVGWHLKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccc-hhhhhhhhhhccceeEEeccccceee-eh-hhh-hcccceEeecccchh-HhhhhhHhhhcCEeee
Confidence 3445566665532 23333444555566666666655432 22 233 555666666665442 2222233344555566
Q ss_pred eecCCCCCCCCchhhhcCCCCcEEeecCCCccccc--hhhhcCCCccEEecccccC
Q 036017 182 RLYNCSKLESFPGILENMARLEYIDLRLTAIKELP--SSVEHLEGLKELRMEYCYK 235 (283)
Q Consensus 182 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~ 235 (283)
.+++|.+-+ + ..+.++=+|..||+++|++..+. ..++++|.|+++.+-+|+.
T Consensus 358 ~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 358 KLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 655533321 1 12344445666666666655332 2355666666666655543
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.10 E-value=9.9e-11 Score=107.46 Aligned_cols=210 Identities=20% Similarity=0.233 Sum_probs=114.1
Q ss_pred CcCCCcccCceEEEecCCC-CCccCCCC-CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCC-CCCCC
Q 036017 28 QGLDYLPEELRYLHWHGYP-LRTLPTNL-STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDL-SETPN 104 (283)
Q Consensus 28 ~~~~~~~~~L~~L~l~~~~-~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~ 104 (283)
.++..+| .|+.|++++|. +..+|... .+-+|++|+++++.+.++|..+.++..|.+|++..+.....++.+ ..+.+
T Consensus 565 ~ff~~m~-~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~ 643 (889)
T KOG4658|consen 565 EFFRSLP-LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQS 643 (889)
T ss_pred HHHhhCc-ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhccc
Confidence 3466677 88888887665 46777766 678888888888888888877888888888887776655555543 34777
Q ss_pred CcEEeeeCCCCCC--cchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccC----EEeccCCcCcccchhhhcCCCCC
Q 036017 105 LERMYLLNCTNLP--FISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLE----VLDLAHCKRLNRLSASICKLKSL 178 (283)
Q Consensus 105 L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L 178 (283)
|++|.+....... ....++..+..|+.+....... .+...+. .++.|. .+.+.++. .......++.+.+|
T Consensus 644 Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~-~~~~L~~~~~~l~~~~~~-~~~~~~~~~~l~~L 719 (889)
T KOG4658|consen 644 LRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLL-GMTRLRSLLQSLSIEGCS-KRTLISSLGSLGNL 719 (889)
T ss_pred ccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhh-hhHHHHHHhHhhhhcccc-cceeecccccccCc
Confidence 8888776533111 1223344555555555533221 0111111 233332 22222211 12233456677788
Q ss_pred CeEeecCCCCCCCCchhhh-----c-CCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccc
Q 036017 179 SWLRLYNCSKLESFPGILE-----N-MARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDN 242 (283)
Q Consensus 179 ~~L~l~~~~~~~~~~~~~~-----~-~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~ 242 (283)
+.|.+.+|...+....+.. . ++++..+...++.....+...-..++|+.|.+..|...+.+.+.
T Consensus 720 ~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~ 789 (889)
T KOG4658|consen 720 EELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPK 789 (889)
T ss_pred ceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCH
Confidence 8888888776532111111 1 22333333333333333333345567777777777666544333
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.08 E-value=3.5e-10 Score=96.58 Aligned_cols=189 Identities=29% Similarity=0.344 Sum_probs=94.8
Q ss_pred EEecCCCC-CccCCCCCCCcceEEecCCCCcccchhhhhccC-CccEEEccCCCCCCCC-CCCCCCCCCcEEeeeCCCCC
Q 036017 40 LHWHGYPL-RTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAF-KLKSVDLCNSQNLTRM-PDLSETPNLERMYLLNCTNL 116 (283)
Q Consensus 40 L~l~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~ 116 (283)
+....+.+ .........+.++.+++.++.+..++....... +|+.|+++++.. ..+ ..++.+++|+.|++++|. +
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~-l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFND-L 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccch-hhhhhhhhccccccccccCCch-h
Confidence 44444443 222222244556666666666665555444442 566666665552 223 245556666666666543 2
Q ss_pred CcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhh
Q 036017 117 PFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGIL 196 (283)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 196 (283)
..++......++|+.|++++|.+.. +|..+. ....|+++.++++... ..+..+..+.++..+.+..+.... .+..+
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~-~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~ 251 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNKISD-LPPEIE-LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESI 251 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCcccc-Cchhhh-hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchh
Confidence 3344333355566666666665432 444432 3334666666655322 222234444555555544433222 23344
Q ss_pred hcCCCCcEEeecCCCccccchhhhcCCCccEEecccccC
Q 036017 197 ENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYK 235 (283)
Q Consensus 197 ~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 235 (283)
..+++++.+++++|.++.++. ++...+++.|+++++..
T Consensus 252 ~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 252 GNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred ccccccceecccccccccccc-ccccCccCEEeccCccc
Confidence 555556666666666665554 55556666666665443
No 36
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.6e-11 Score=95.98 Aligned_cols=179 Identities=19% Similarity=0.174 Sum_probs=122.1
Q ss_pred CcceEEecCCCCcc--cchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCCc--chhhccCCCCCcE
Q 036017 57 DKLVVLNLPCSNVE--LLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLPF--ISSSIENLNNLSM 131 (283)
Q Consensus 57 ~~L~~l~l~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~ 131 (283)
..||++|++...++ .+-.-+..|.+|+.|.+.+++..+.+. .++.-.+|+.++++.|....+ ....+.+|..|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 45888899888777 333346778899999998887665554 577788899999988876654 3445788888999
Q ss_pred EEecCCCCcCCChhHhhc-CCCccCEEeccCCcCc---ccchhhhcCCCCCCeEeecCCCCCCC-CchhhhcCCCCcEEe
Q 036017 132 LRLEGCKILGPFPAFISL-SLTNLEVLDLAHCKRL---NRLSASICKLKSLSWLRLYNCSKLES-FPGILENMARLEYID 206 (283)
Q Consensus 132 L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~ 206 (283)
|++++|....+....+.. --++|+.|++++++.. ..+......+|++.+|++++|..... ....+.+++.|+++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 999988765443322221 2357888888887431 22333345788888888888765543 335566778888888
Q ss_pred ecCCCcc--ccchhhhcCCCccEEecccccC
Q 036017 207 LRLTAIK--ELPSSVEHLEGLKELRMEYCYK 235 (283)
Q Consensus 207 l~~~~l~--~~~~~~~~~~~L~~L~l~~~~~ 235 (283)
+++|... ..--.+...|+|.+|++.+|-.
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 8887654 1112346777888888877643
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=1.4e-09 Score=93.01 Aligned_cols=194 Identities=29% Similarity=0.389 Sum_probs=136.1
Q ss_pred EEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC-CCCCCC-CCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCC
Q 036017 61 VLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETP-NLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCK 138 (283)
Q Consensus 61 ~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 138 (283)
.+....+.+......+.....++.+++.++. ...++ ...... +|+.|+++++. +..++..+..+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcc-cccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch
Confidence 4666666664434445566788888888877 44454 345553 89999988864 45555667888899999999888
Q ss_pred CcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchh
Q 036017 139 ILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSS 218 (283)
Q Consensus 139 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~ 218 (283)
+.. ++.... ..+.|+.|+++++.+ ..++........|+++.++++.... .+..+..+.++..+.+.++.+..++..
T Consensus 175 l~~-l~~~~~-~~~~L~~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~~~~~~ 250 (394)
T COG4886 175 LSD-LPKLLS-NLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLEDLPES 250 (394)
T ss_pred hhh-hhhhhh-hhhhhhheeccCCcc-ccCchhhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceeeeccch
Confidence 654 565544 677888999988764 4445444455668888888865332 334566777788888888888777777
Q ss_pred hhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccc
Q 036017 219 VEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQL 262 (283)
Q Consensus 219 ~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~ 262 (283)
++.++.+++|++++|. +..++. +..+.+++.|+++++.+...
T Consensus 251 ~~~l~~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 251 IGNLSNLETLDLSNNQ-ISSISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred hccccccceecccccc-cccccc-ccccCccCEEeccCcccccc
Confidence 8888889999988854 444444 77788888999888777633
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.89 E-value=1.2e-10 Score=94.84 Aligned_cols=248 Identities=18% Similarity=0.218 Sum_probs=169.5
Q ss_pred CceEEEecCCCCCc---cCCCC-CCCcceEEecCCCC-ccc--chhhhhccCCccEEEccCCCCCCCCC--C-CCCCCCC
Q 036017 36 ELRYLHWHGYPLRT---LPTNL-STDKLVVLNLPCSN-VEL--LWEEKKEAFKLKSVDLCNSQNLTRMP--D-LSETPNL 105 (283)
Q Consensus 36 ~L~~L~l~~~~~~~---~~~~~-~~~~L~~l~l~~~~-~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~--~-~~~~~~L 105 (283)
.|+.|++.|+.-.. +..+. .+|++++|.+-++. ++. +-..-..|++|+++++..|...+... . ...|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 68899999987532 22223 78999999998885 331 22223458999999998876555432 2 3568999
Q ss_pred cEEeeeCCCCCCc--chhhccCCCCCcEEEecCCCCcC-CChhHhhcCCCccCEEeccCCcCcccchhh--hcCCCCCCe
Q 036017 106 ERMYLLNCTNLPF--ISSSIENLNNLSMLRLEGCKILG-PFPAFISLSLTNLEVLDLAHCKRLNRLSAS--ICKLKSLSW 180 (283)
Q Consensus 106 ~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--l~~~~~L~~ 180 (283)
+++++++|..+.. +.....++..++.+...+|.-.+ +.-.....+++-+..+++..|...++...+ -.++..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 9999999976643 33455677778888777764221 111122225666777777777655443322 246889999
Q ss_pred EeecCCCCCCCCc--hhhhcCCCCcEEeecCCC-cc--ccchhhhcCCCccEEecccccCCCC--CccccCCCcccceee
Q 036017 181 LRLYNCSKLESFP--GILENMARLEYIDLRLTA-IK--ELPSSVEHLEGLKELRMEYCYKLSK--LPDNLGSLRSLKRLH 253 (283)
Q Consensus 181 L~l~~~~~~~~~~--~~~~~~~~L~~l~l~~~~-l~--~~~~~~~~~~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~L~ 253 (283)
+..++|...+..+ .....+.+|+.+.++.+. ++ .+...-.+++.|+.+++.+|..+.+ +...-.+++.||.+.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 9999988766544 233468899999999975 44 4444457899999999999877743 444456889999999
Q ss_pred cCCcc-cccc-----cHHhhccCCCCceeeccCCCC
Q 036017 254 TGKSA-ISQL-----PSSIADLKQVDGLSFYGCRGL 283 (283)
Q Consensus 254 l~~~~-i~~~-----~~~~~~~~~L~~L~l~~c~~l 283 (283)
++.|+ |+.- ...-..+..+..+.+.+|+.+
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 99876 4421 223356788999999999864
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.87 E-value=3.9e-09 Score=97.18 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=38.6
Q ss_pred hhhcCCCCcEEeecCCCccccchh------hhc-CCCccEEecccccCCCCCccccCCCcccceeecCCccc-ccccHHh
Q 036017 195 ILENMARLEYIDLRLTAIKELPSS------VEH-LEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAI-SQLPSSI 266 (283)
Q Consensus 195 ~~~~~~~L~~l~l~~~~l~~~~~~------~~~-~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i-~~~~~~~ 266 (283)
.+..+.+|+.|.+.++.+.+.... ... ++++..+.+.+|.....+ .+..-.++|+.|.+..+.. .++....
T Consensus 712 ~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l-~~~~f~~~L~~l~l~~~~~~e~~i~~~ 790 (889)
T KOG4658|consen 712 SLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL-TWLLFAPHLTSLSLVSCRLLEDIIPKL 790 (889)
T ss_pred ccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc-chhhccCcccEEEEecccccccCCCHH
Confidence 344556677777776666421110 111 344555555555544433 2223456788888777543 3443333
Q ss_pred hccCCCC
Q 036017 267 ADLKQVD 273 (283)
Q Consensus 267 ~~~~~L~ 273 (283)
..+..++
T Consensus 791 k~~~~l~ 797 (889)
T KOG4658|consen 791 KALLELK 797 (889)
T ss_pred HHhhhcc
Confidence 3333333
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.2e-10 Score=91.18 Aligned_cols=177 Identities=18% Similarity=0.180 Sum_probs=116.9
Q ss_pred CCCcEEeeeCCCCCC-cchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchh--hhcCCCCCC
Q 036017 103 PNLERMYLLNCTNLP-FISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSA--SICKLKSLS 179 (283)
Q Consensus 103 ~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~ 179 (283)
..|+.+++++..... .+-..+..|.+|+.+.+.++++.+.+...++ .-..|+.++++.|........ .+.+|..|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 348888888744332 3445678888999999998887777777777 778899999998876554332 356788899
Q ss_pred eEeecCCCCCCCCch-hhh-cCCCCcEEeecCCCcc---ccchh-hhcCCCccEEecccccCCC-CCccccCCCccccee
Q 036017 180 WLRLYNCSKLESFPG-ILE-NMARLEYIDLRLTAIK---ELPSS-VEHLEGLKELRMEYCYKLS-KLPDNLGSLRSLKRL 252 (283)
Q Consensus 180 ~L~l~~~~~~~~~~~-~~~-~~~~L~~l~l~~~~l~---~~~~~-~~~~~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L 252 (283)
+|++++|........ ... --+.|..|+++++.-. ...+. ...+++|.+||++.|..++ .....+-+++.|++|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 999998877654221 111 1245677777765322 22222 3678888888888776554 333456677788888
Q ss_pred ecCCcccc--cccHHhhccCCCCceeeccC
Q 036017 253 HTGKSAIS--QLPSSIADLKQVDGLSFYGC 280 (283)
Q Consensus 253 ~l~~~~i~--~~~~~~~~~~~L~~L~l~~c 280 (283)
.++.|+.- +-.-.+...|.|.+|++.+|
T Consensus 344 SlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 344 SLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 88877643 21123456778888888776
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.82 E-value=1.4e-08 Score=91.15 Aligned_cols=104 Identities=22% Similarity=0.371 Sum_probs=64.0
Q ss_pred CCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcc-ccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCC
Q 036017 178 LSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIK-ELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGK 256 (283)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~ 256 (283)
++.|++.++.+.+.+|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|...+.+|+.+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 555666666666666666666666666666666665 5666666666666666666666566666666666666666666
Q ss_pred cccc-cccHHhhcc-CCCCceeeccCC
Q 036017 257 SAIS-QLPSSIADL-KQVDGLSFYGCR 281 (283)
Q Consensus 257 ~~i~-~~~~~~~~~-~~L~~L~l~~c~ 281 (283)
|.++ .+|..+... .++..+++.+|+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 6665 555554432 344455555443
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.77 E-value=3.9e-08 Score=88.35 Aligned_cols=105 Identities=22% Similarity=0.295 Sum_probs=65.9
Q ss_pred cCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcc-ccchhhhcCCCccEEeccc
Q 036017 154 LEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIK-ELPSSVEHLEGLKELRMEY 232 (283)
Q Consensus 154 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~~~~~~L~~L~l~~ 232 (283)
++.|+++++.+.+.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 556666666655566666666666666766666666666666666666667777666666 5666666666677777666
Q ss_pred ccCCCCCccccCCC-cccceeecCCcc
Q 036017 233 CYKLSKLPDNLGSL-RSLKRLHTGKSA 258 (283)
Q Consensus 233 ~~~~~~l~~~~~~l-~~L~~L~l~~~~ 258 (283)
|...+.+|..+... .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 66555666555432 244455555543
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=8.9e-09 Score=80.83 Aligned_cols=217 Identities=15% Similarity=0.103 Sum_probs=147.2
Q ss_pred CceEEEecCCCCCccCCCC----CCCcceEEecCCCCcc---cchhhhhccCCccEEEccCCCCCCCCCCC-CCCCCCcE
Q 036017 36 ELRYLHWHGYPLRTLPTNL----STDKLVVLNLPCSNVE---LLWEEKKEAFKLKSVDLCNSQNLTRMPDL-SETPNLER 107 (283)
Q Consensus 36 ~L~~L~l~~~~~~~~~~~~----~~~~L~~l~l~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~ 107 (283)
-++.+.+.++.+....... .+..++.+++.+|.+. .+..-+.++|.|+.|+++.|.....+... ....+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 4566777788775544332 6899999999999987 34455778999999999999866666544 46778999
Q ss_pred EeeeCCCCCCc--chhhccCCCCCcEEEecCCCCcCC--ChhHhhcCCCccCEEeccCCcCcc--cchhhhcCCCCCCeE
Q 036017 108 MYLLNCTNLPF--ISSSIENLNNLSMLRLEGCKILGP--FPAFISLSLTNLEVLDLAHCKRLN--RLSASICKLKSLSWL 181 (283)
Q Consensus 108 L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L 181 (283)
|.+.+.. ..+ ....+..+|.+++|.++.|..... -...+..--+.++++....|.... ......+.+|++..+
T Consensus 126 lVLNgT~-L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 126 LVLNGTG-LSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEcCCC-CChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 9998743 332 334567888899998888843210 111121012356777777664321 112223457899999
Q ss_pred eecCCCCCCCCc-hhhhcCCCCcEEeecCCCccccch--hhhcCCCccEEecccccCCCCCc------cccCCCccccee
Q 036017 182 RLYNCSKLESFP-GILENMARLEYIDLRLTAIKELPS--SVEHLEGLKELRMEYCYKLSKLP------DNLGSLRSLKRL 252 (283)
Q Consensus 182 ~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~~~l~------~~~~~l~~L~~L 252 (283)
.+..|.+.+.-. .....++.+..|+++.+++..+.+ .+..++.|..|.+++++....+. -.+++++++|.|
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vL 284 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVL 284 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEe
Confidence 998887654322 344566778899999999996654 46789999999999987764332 224677888888
Q ss_pred e
Q 036017 253 H 253 (283)
Q Consensus 253 ~ 253 (283)
+
T Consensus 285 N 285 (418)
T KOG2982|consen 285 N 285 (418)
T ss_pred c
Confidence 5
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.60 E-value=4.1e-08 Score=60.00 Aligned_cols=56 Identities=29% Similarity=0.418 Sum_probs=21.1
Q ss_pred CcEEeecCCCccccch-hhhcCCCccEEecccccCCCCCccccCCCcccceeecCCc
Q 036017 202 LEYIDLRLTAIKELPS-SVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKS 257 (283)
Q Consensus 202 L~~l~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~ 257 (283)
|+++++++|.++.++. .+..+++|+.|++++|.....-+..+..+++|+.|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444443332 1233444444444433322222223334444444444433
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.59 E-value=8.8e-08 Score=74.43 Aligned_cols=205 Identities=18% Similarity=0.123 Sum_probs=122.1
Q ss_pred CCCcceEEecCCCCccc-----chhhhhccCCccEEEccCCCCCCC------------CCCCCCCCCCcEEeeeCCCCCC
Q 036017 55 STDKLVVLNLPCSNVEL-----LWEEKKEAFKLKSVDLCNSQNLTR------------MPDLSETPNLERMYLLNCTNLP 117 (283)
Q Consensus 55 ~~~~L~~l~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~------------~~~~~~~~~L~~L~l~~~~~~~ 117 (283)
.+..+..+++++|.+.. +...+++-.+|+..++++.. +.. .+.+..||+|+..+++.|.+-.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 45667777777777662 22334445566666665432 111 1235667788888887776555
Q ss_pred cchh----hccCCCCCcEEEecCCCCcCCChhHhh------------cCCCccCEEeccCCcCcccch----hhhcCCCC
Q 036017 118 FISS----SIENLNNLSMLRLEGCKILGPFPAFIS------------LSLTNLEVLDLAHCKRLNRLS----ASICKLKS 177 (283)
Q Consensus 118 ~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~------------~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~ 177 (283)
..|. .+++...|++|.+++|.+-.....-++ ..-|.|+.+...+|++..... ..+.....
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 4443 345667788888877754321111111 145678888888876643221 12334467
Q ss_pred CCeEeecCCCCCCC-----CchhhhcCCCCcEEeecCCCcc-----ccchhhhcCCCccEEecccccCCCCCc-cc---c
Q 036017 178 LSWLRLYNCSKLES-----FPGILENMARLEYIDLRLTAIK-----ELPSSVEHLEGLKELRMEYCYKLSKLP-DN---L 243 (283)
Q Consensus 178 L~~L~l~~~~~~~~-----~~~~~~~~~~L~~l~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~---~ 243 (283)
|.++.+..|.+... ....+.++.+|+.||+.+|.++ .+...+..|+.|++|.+..|-....-. .. +
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f 266 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF 266 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence 88888888766433 1234557788999999998887 334445778888999888886543211 11 1
Q ss_pred --CCCcccceeecCCcccc
Q 036017 244 --GSLRSLKRLHTGKSAIS 260 (283)
Q Consensus 244 --~~l~~L~~L~l~~~~i~ 260 (283)
...|+|+.|...+|.+.
T Consensus 267 ~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 267 NEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hhhcCCCccccccchhhhc
Confidence 23567788877777553
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.54 E-value=7.8e-08 Score=58.76 Aligned_cols=36 Identities=25% Similarity=0.476 Sum_probs=13.8
Q ss_pred hcCCCCcEEeecCCCccccch-hhhcCCCccEEeccc
Q 036017 197 ENMARLEYIDLRLTAIKELPS-SVEHLEGLKELRMEY 232 (283)
Q Consensus 197 ~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~L~l~~ 232 (283)
..+++|+++++++|.++.++. .+..+++|+.|++++
T Consensus 22 ~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 22 SNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TTGTTESEEEETSSSESEEETTTTTTSTTESEEEETS
T ss_pred cCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcC
Confidence 333344444444444333322 223444444444443
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.53 E-value=1.1e-08 Score=87.89 Aligned_cols=82 Identities=24% Similarity=0.282 Sum_probs=36.8
Q ss_pred CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEe
Q 036017 55 STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRL 134 (283)
Q Consensus 55 ~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 134 (283)
.+.+|+.+++.+|.+..+...+..+++|++|++++|. +..+..+..++.|+.|++.+|.... + ..+..+++|+.+++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKELNLSGNLISD-I-SGLESLKSLKLLDL 169 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheeccccc-cccccchhhccchhhheeccCcchh-c-cCCccchhhhcccC
Confidence 3445555555555555443333445555555555544 3333344444445555555443221 1 12223445555555
Q ss_pred cCCCC
Q 036017 135 EGCKI 139 (283)
Q Consensus 135 ~~~~~ 139 (283)
++|.+
T Consensus 170 ~~n~i 174 (414)
T KOG0531|consen 170 SYNRI 174 (414)
T ss_pred Ccchh
Confidence 55443
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.50 E-value=6.7e-08 Score=75.08 Aligned_cols=205 Identities=17% Similarity=0.121 Sum_probs=117.7
Q ss_pred CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCC----cc--------CCCCCCCcceEEecCCCC
Q 036017 1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLR----TL--------PTNLSTDKLVVLNLPCSN 68 (283)
Q Consensus 1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~--------~~~~~~~~L~~l~l~~~~ 68 (283)
|..+..+++++|.|..+. ...++..+.+-. +|+..+++.-..+ .+ +...+||+|+.+++++|.
T Consensus 29 ~d~~~evdLSGNtigtEA----~e~l~~~ia~~~-~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 29 MDELVEVDLSGNTIGTEA----MEELCNVIANVR-NLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred hcceeEEeccCCcccHHH----HHHHHHHHhhhc-ceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 345677777777765421 223344455555 7777776654431 11 223378888888888887
Q ss_pred cc-cch----hhhhccCCccEEEccCCCCCCCCC--C-------------CCCCCCCcEEeeeCCCCCCc----chhhcc
Q 036017 69 VE-LLW----EEKKEAFKLKSVDLCNSQNLTRMP--D-------------LSETPNLERMYLLNCTNLPF----ISSSIE 124 (283)
Q Consensus 69 ~~-~~~----~~l~~~~~L~~L~l~~~~~~~~~~--~-------------~~~~~~L~~L~l~~~~~~~~----~~~~~~ 124 (283)
|. .++ +.+.+-..|++|.+.+|. ...+. . ..+-|.|+.+....|.+... ....+.
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~ 182 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLE 182 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHH
Confidence 76 333 345556778888887776 33321 1 23457788877776554331 222344
Q ss_pred CCCCCcEEEecCCCCcCCCh-----hHhhcCCCccCEEeccCCcCcc----cchhhhcCCCCCCeEeecCCCCCCCCc-h
Q 036017 125 NLNNLSMLRLEGCKILGPFP-----AFISLSLTNLEVLDLAHCKRLN----RLSASICKLKSLSWLRLYNCSKLESFP-G 194 (283)
Q Consensus 125 ~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~-~ 194 (283)
...+|+++.+..|.+...-. ..+. ++.+|+.||+.+|.+.. .+...+..++.|++|.+..|-....-. .
T Consensus 183 sh~~lk~vki~qNgIrpegv~~L~~~gl~-y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~ 261 (388)
T COG5238 183 SHENLKEVKIQQNGIRPEGVTMLAFLGLF-YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKS 261 (388)
T ss_pred hhcCceeEEeeecCcCcchhHHHHHHHHH-HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHH
Confidence 45677888887776543211 1222 56788888888876542 233345667778888888877654321 1
Q ss_pred hhh-----cCCCCcEEeecCCCc
Q 036017 195 ILE-----NMARLEYIDLRLTAI 212 (283)
Q Consensus 195 ~~~-----~~~~L~~l~l~~~~l 212 (283)
.+. ..++|..|.+.+|..
T Consensus 262 v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 262 VLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred HHHHhhhhcCCCccccccchhhh
Confidence 111 245666666665543
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.49 E-value=1.6e-08 Score=86.74 Aligned_cols=106 Identities=21% Similarity=0.219 Sum_probs=59.5
Q ss_pred CCCcccCceEEEecCCCCCccCC-CCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEE
Q 036017 30 LDYLPEELRYLHWHGYPLRTLPT-NLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERM 108 (283)
Q Consensus 30 ~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 108 (283)
+..+. +++.|++.++.+..+.. ...+++|+.+++++|.+..+.. +..+..|+.|++.+|. +..+..+..++.|+.+
T Consensus 91 l~~~~-~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLK-SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNL-ISDISGLESLKSLKLL 167 (414)
T ss_pred ccccc-ceeeeeccccchhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccCc-chhccCCccchhhhcc
Confidence 44455 66666666666666655 3356666666666666665432 4445556666666665 4444455556666666
Q ss_pred eeeCCCCCCcchhh-ccCCCCCcEEEecCCCC
Q 036017 109 YLLNCTNLPFISSS-IENLNNLSMLRLEGCKI 139 (283)
Q Consensus 109 ~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~ 139 (283)
+++++..... ... ...+.+++.+.+.++.+
T Consensus 168 ~l~~n~i~~i-e~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 168 DLSYNRIVDI-ENDELSELISLEELDLGGNSI 198 (414)
T ss_pred cCCcchhhhh-hhhhhhhccchHHHhccCCch
Confidence 6666543221 111 34555666666666554
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=5.7e-08 Score=76.42 Aligned_cols=182 Identities=13% Similarity=0.086 Sum_probs=85.6
Q ss_pred CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCC-ccCCC-CCCCcceEEecCCCCcc--cchhhhh
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLR-TLPTN-LSTDKLVVLNLPCSNVE--LLWEEKK 77 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~-~~~~~L~~l~l~~~~~~--~~~~~l~ 77 (283)
+++|++++.+|.++.|+ ++...+.++| +|++|+++.+++. .+... ....+|+.+-+.+.++. ..-..+.
T Consensus 71 ~~v~elDL~~N~iSdWs------eI~~ile~lP-~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWS------EIGAILEQLP-ALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred hhhhhhhcccchhccHH------HHHHHHhcCc-cceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhh
Confidence 45566666666655433 3344456666 6666666666652 12111 23456666666665544 3333445
Q ss_pred ccCCccEEEccCCCC---CCCCCCCCC-CCCCcEEeeeCCCCCCc--chhhccCCCCCcEEEecCCCCcCCChhHhhcCC
Q 036017 78 EAFKLKSVDLCNSQN---LTRMPDLSE-TPNLERMYLLNCTNLPF--ISSSIENLNNLSMLRLEGCKILGPFPAFISLSL 151 (283)
Q Consensus 78 ~~~~L~~L~l~~~~~---~~~~~~~~~-~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 151 (283)
.+|.++.++++.|.. ...-..... -+.++++.+..|....+ ...-...+|++..+.+-+|++.+.-...-...+
T Consensus 144 ~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~ 223 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF 223 (418)
T ss_pred cchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCC
Confidence 566666666665521 111011111 23444444444432211 111224556666666666654322111111234
Q ss_pred CccCEEeccCCcCcc-cchhhhcCCCCCCeEeecCCCCCC
Q 036017 152 TNLEVLDLAHCKRLN-RLSASICKLKSLSWLRLYNCSKLE 190 (283)
Q Consensus 152 ~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~ 190 (283)
+.+--|+++.+++.. .-...+.++++|+-|+++.+.+.+
T Consensus 224 p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 224 PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred CcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 455555665544321 112235566666666666655543
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.32 E-value=1.3e-08 Score=88.87 Aligned_cols=193 Identities=18% Similarity=0.178 Sum_probs=112.3
Q ss_pred cCCccEEEccCCCCCCCC-C-CCCCCCCCcEEeeeCCCCCCcchhhccCC-CCCcEEEecCC---------CCcCCChhH
Q 036017 79 AFKLKSVDLCNSQNLTRM-P-DLSETPNLERMYLLNCTNLPFISSSIENL-NNLSMLRLEGC---------KILGPFPAF 146 (283)
Q Consensus 79 ~~~L~~L~l~~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~---------~~~~~~~~~ 146 (283)
+++++.+.+-.......+ | .+..+.+|+.|.+.+|...... .+..+ ..|+.|--+.. ...+++...
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~--GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAK--GLQELRHQLEKLICHNSLDALRHVFASCGGDISNS 160 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhh--hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccc
Confidence 455566655443333333 2 4567888999999887654321 11111 12333322211 000111111
Q ss_pred hhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhh-hcCCCc
Q 036017 147 ISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSV-EHLEGL 225 (283)
Q Consensus 147 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~-~~~~~L 225 (283)
+ .+-.|...+.++|+ ...+..++.-++.++.|+++.|++... ..+..++.|++||+++|.++.+|..- ..+. |
T Consensus 161 ~--~Wn~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L 234 (1096)
T KOG1859|consen 161 P--VWNKLATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-L 234 (1096)
T ss_pred h--hhhhHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-h
Confidence 1 23345666666654 345555666777888888888777653 25677888888888888888666542 3334 8
Q ss_pred cEEecccccCCCCCccccCCCcccceeecCCccccccc--HHhhccCCCCceeeccCC
Q 036017 226 KELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLP--SSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 226 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~--~~~~~~~~L~~L~l~~c~ 281 (283)
+.|.+.+|...+ + ..+.++.+|+.||+++|-+.+.. ..++.+..|+.|.+.|||
T Consensus 235 ~~L~lrnN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 235 QLLNLRNNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eeeeecccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 888888765432 2 23456778888888888776322 345566777778777775
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.25 E-value=7.9e-07 Score=80.23 Aligned_cols=106 Identities=21% Similarity=0.147 Sum_probs=48.5
Q ss_pred CCCcEEeeeCCCCCC-cchh-hccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCe
Q 036017 103 PNLERMYLLNCTNLP-FISS-SIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSW 180 (283)
Q Consensus 103 ~~L~~L~l~~~~~~~-~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 180 (283)
.+|+.|++++..... .++. .-..+|+|+.|.+.+-.+..+--..+...+|+|..||++++.+... ..++.+++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 456666665533322 1222 2235566666666554432211122333566666666666543222 34555556666
Q ss_pred EeecCCCCCC-CCchhhhcCCCCcEEeecCC
Q 036017 181 LRLYNCSKLE-SFPGILENMARLEYIDLRLT 210 (283)
Q Consensus 181 L~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~ 210 (283)
|.+.+-.+.. ..-..+..+.+|+.||++..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 6555422221 11123344555555555543
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.18 E-value=1.1e-05 Score=67.64 Aligned_cols=135 Identities=22% Similarity=0.420 Sum_probs=75.4
Q ss_pred CCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCC
Q 036017 99 LSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSL 178 (283)
Q Consensus 99 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 178 (283)
+..+.+++.|++++| .+..+| .-.++|++|.+++|.....+|..+ +++|+.|++++|.....+| ++|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLP---VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLP------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccC---CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccc------ccc
Confidence 344678888888887 344555 122368888888766555556544 3578888888874444333 346
Q ss_pred CeEeecCCCC--CCCCchhhhcCCCCcEEeecCCC-cc--ccchhhhcCCCccEEecccccCCCCCccccCCCcccceee
Q 036017 179 SWLRLYNCSK--LESFPGILENMARLEYIDLRLTA-IK--ELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLH 253 (283)
Q Consensus 179 ~~L~l~~~~~--~~~~~~~~~~~~~L~~l~l~~~~-l~--~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 253 (283)
+.|++..+.. ...+|. +|+.|.+..+. .. ..+. .-.++|+.|++.+|.... +|..+. .+|+.|+
T Consensus 115 e~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ 183 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII-LPEKLP--ESLQSIT 183 (426)
T ss_pred ceEEeCCCCCcccccCcc------hHhheecccccccccccccc--ccCCcccEEEecCCCccc-Cccccc--ccCcEEE
Confidence 6666654322 222332 35555553321 11 1111 112568888888877543 333332 4777887
Q ss_pred cCCc
Q 036017 254 TGKS 257 (283)
Q Consensus 254 l~~~ 257 (283)
++.+
T Consensus 184 ls~n 187 (426)
T PRK15386 184 LHIE 187 (426)
T ss_pred eccc
Confidence 7765
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.15 E-value=6.3e-07 Score=80.82 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=36.0
Q ss_pred CCcceEEecCCCCcc--cchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCC-cchhhccCCCCCcEE
Q 036017 56 TDKLVVLNLPCSNVE--LLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLP-FISSSIENLNNLSML 132 (283)
Q Consensus 56 ~~~L~~l~l~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L 132 (283)
+|.|+.|.+.+-.+. .+..-..++++|..||++++. +..+..++++++|+.|.+.+-.+.. ..-..+-.+++|++|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 455555555554333 222333445555555555544 3333444555555555544322221 111233445555555
Q ss_pred EecCC
Q 036017 133 RLEGC 137 (283)
Q Consensus 133 ~l~~~ 137 (283)
|++..
T Consensus 226 DIS~~ 230 (699)
T KOG3665|consen 226 DISRD 230 (699)
T ss_pred ecccc
Confidence 55543
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.06 E-value=5.7e-07 Score=62.79 Aligned_cols=108 Identities=19% Similarity=0.301 Sum_probs=55.0
Q ss_pred cCEEeccCCcCc--ccchhhhcCCCCCCeEeecCCCCCCCCchhh-hcCCCCcEEeecCCCccccchhhhcCCCccEEec
Q 036017 154 LEVLDLAHCKRL--NRLSASICKLKSLSWLRLYNCSKLESFPGIL-ENMARLEYIDLRLTAIKELPSSVEHLEGLKELRM 230 (283)
Q Consensus 154 L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l 230 (283)
+..++++.|.+. ...+..+.....|...++++|.+.. +|+.+ .+++.++.+++++|.++.+|..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 445566655432 1222233344455555666544433 33322 2344566666666666666666666666666666
Q ss_pred ccccCCCCCccccCCCcccceeecCCccccccc
Q 036017 231 EYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLP 263 (283)
Q Consensus 231 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~ 263 (283)
..|+... .|..+..+.++..|+.-.|.+.+++
T Consensus 108 ~~N~l~~-~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 108 RFNPLNA-EPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred ccCcccc-chHHHHHHHhHHHhcCCCCccccCc
Confidence 6654332 3344444555555655555555444
No 56
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.04 E-value=2.8e-06 Score=74.47 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=17.7
Q ss_pred cceeecCCcccc---cccHHhhccCCCCceeeccCCC
Q 036017 249 LKRLHTGKSAIS---QLPSSIADLKQVDGLSFYGCRG 282 (283)
Q Consensus 249 L~~L~l~~~~i~---~~~~~~~~~~~L~~L~l~~c~~ 282 (283)
++.|+++.+... .+......+..++.+++.+|+.
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 466666665432 2211111166677777776654
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=6.5e-06 Score=46.24 Aligned_cols=41 Identities=27% Similarity=0.490 Sum_probs=28.4
Q ss_pred CCccEEecccccCCCCCccccCCCcccceeecCCcccccccH
Q 036017 223 EGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPS 264 (283)
Q Consensus 223 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~ 264 (283)
++|++|++++|. ++.++..+.++++|+.|++++|.|+.++.
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 467888888764 44566667788888888888888776543
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.98 E-value=6.9e-08 Score=84.52 Aligned_cols=118 Identities=20% Similarity=0.176 Sum_probs=54.9
Q ss_pred CCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchh-hccCCCCCcEEEecCCCCcCCC
Q 036017 65 PCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISS-SIENLNNLSMLRLEGCKILGPF 143 (283)
Q Consensus 65 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~ 143 (283)
+.|.+..+..++.-++.+++|++++|++. ....+..+++|++|++++|... .+|. ...+|. |..|.+.+|.+.. +
T Consensus 172 syN~L~~mD~SLqll~ale~LnLshNk~~-~v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t-L 247 (1096)
T KOG1859|consen 172 SYNRLVLMDESLQLLPALESLNLSHNKFT-KVDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT-L 247 (1096)
T ss_pred chhhHHhHHHHHHHHHHhhhhccchhhhh-hhHHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh-h
Confidence 33333333344445566666666666532 2334556666666666654432 2221 122332 5566666554432 1
Q ss_pred hhHhhcCCCccCEEeccCCcCccc-chhhhcCCCCCCeEeecCCCC
Q 036017 144 PAFISLSLTNLEVLDLAHCKRLNR-LSASICKLKSLSWLRLYNCSK 188 (283)
Q Consensus 144 ~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~ 188 (283)
..+. ++.+|+.||+++|-+.+. -..-+..+..|+.|++.||.+
T Consensus 248 -~gie-~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 248 -RGIE-NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred -hhHH-hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 1222 555666666666533221 111122344556666666444
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1.3e-05 Score=45.06 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=14.6
Q ss_pred CceEEEecCCCCCccCC-CCCCCcceEEecCCCCcc
Q 036017 36 ELRYLHWHGYPLRTLPT-NLSTDKLVVLNLPCSNVE 70 (283)
Q Consensus 36 ~L~~L~l~~~~~~~~~~-~~~~~~L~~l~l~~~~~~ 70 (283)
+|++|+++++.+..+++ ..++++|+.|++++|.+.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 34444444444444444 224444444444444444
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.89 E-value=3.3e-06 Score=74.07 Aligned_cols=111 Identities=25% Similarity=0.346 Sum_probs=45.6
Q ss_pred cCCccEEEccCCCCCCC--C-CCCCCCCCCcEEeeeCC-CCCCc----chhhccCCCCCcEEEecCCC-CcCCChhHhhc
Q 036017 79 AFKLKSVDLCNSQNLTR--M-PDLSETPNLERMYLLNC-TNLPF----ISSSIENLNNLSMLRLEGCK-ILGPFPAFISL 149 (283)
Q Consensus 79 ~~~L~~L~l~~~~~~~~--~-~~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~ 149 (283)
++.|+.+.+.++..... . +....+++|++|+++++ ..... .......+++|+.++++++. +++..-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555554443332 1 12344555555555441 11111 11122344555555555544 22222223332
Q ss_pred CCCccCEEeccCCcC-cc-cchhhhcCCCCCCeEeecCCCCC
Q 036017 150 SLTNLEVLDLAHCKR-LN-RLSASICKLKSLSWLRLYNCSKL 189 (283)
Q Consensus 150 ~~~~L~~L~l~~~~~-~~-~~~~~l~~~~~L~~L~l~~~~~~ 189 (283)
.+++|+.|.+.+|.. .. .+......+++|++|++++|...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 345555555444432 11 12222334555555555555443
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.86 E-value=3.5e-05 Score=64.73 Aligned_cols=137 Identities=17% Similarity=0.257 Sum_probs=85.2
Q ss_pred hhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCcc
Q 036017 75 EKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNL 154 (283)
Q Consensus 75 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 154 (283)
.+..+.+++.|++++|. +..+|.+ ..+|++|.+++|.....+|..+ .++|+.|.+++|.....+ +.+|
T Consensus 47 r~~~~~~l~~L~Is~c~-L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-------P~sL 114 (426)
T PRK15386 47 QIEEARASGRLYIKDCD-IESLPVL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-------PESV 114 (426)
T ss_pred HHHHhcCCCEEEeCCCC-CcccCCC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-------cccc
Confidence 35668999999999984 5556522 2469999999987776666544 358999999988433322 3467
Q ss_pred CEEeccCCcC--cccchhhhcCCCCCCeEeecCCCCCC--CCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEec
Q 036017 155 EVLDLAHCKR--LNRLSASICKLKSLSWLRLYNCSKLE--SFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRM 230 (283)
Q Consensus 155 ~~L~l~~~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l 230 (283)
+.|++..+.. ...+| ++|+.|.+..+.... ..+. .-.++|++|++++|....+|..+- .+|+.|++
T Consensus 115 e~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 115 RSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKLP--ESLQSITL 184 (426)
T ss_pred ceEEeCCCCCcccccCc------chHhheecccccccccccccc--ccCCcccEEEecCCCcccCccccc--ccCcEEEe
Confidence 7888765332 12222 356677764422211 1111 112578888888877655443322 47888887
Q ss_pred ccc
Q 036017 231 EYC 233 (283)
Q Consensus 231 ~~~ 233 (283)
+.+
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 654
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.83 E-value=4.1e-05 Score=57.28 Aligned_cols=126 Identities=20% Similarity=0.242 Sum_probs=66.6
Q ss_pred ceEEEecCCCCCccCCCC-CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCC-CCCCCcEEeeeCCC
Q 036017 37 LRYLHWHGYPLRTLPTNL-STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLS-ETPNLERMYLLNCT 114 (283)
Q Consensus 37 L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~ 114 (283)
-+.+++.+..+..+.... -..+...+++++|.+..+.. +..++.|..|.+.+|.+...-+.+. .+++|+.|.+++|.
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 344455554443332222 34555666777766664432 4556667777776666443333333 35667777777654
Q ss_pred CCCc-chhhccCCCCCcEEEecCCCCcCC--ChhHhhcCCCccCEEeccCCc
Q 036017 115 NLPF-ISSSIENLNNLSMLRLEGCKILGP--FPAFISLSLTNLEVLDLAHCK 163 (283)
Q Consensus 115 ~~~~-~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~ 163 (283)
...- -...+..||.|+.|.+.+|++... +-......+|+|+.||+.+-.
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 3321 112345667777777777665421 111112256777777777643
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.72 E-value=8.5e-05 Score=55.62 Aligned_cols=59 Identities=24% Similarity=0.287 Sum_probs=27.2
Q ss_pred CCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCC
Q 036017 80 FKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKI 139 (283)
Q Consensus 80 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 139 (283)
.....+++.+|+ ....+.+..++.|.+|.+++|.....-|.-...+++|..|.+.+|.+
T Consensus 42 d~~d~iDLtdNd-l~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 42 DQFDAIDLTDND-LRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cccceecccccc-hhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 344455555554 22333444555555555555443332222233444555555555543
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.63 E-value=1.3e-05 Score=56.21 Aligned_cols=111 Identities=16% Similarity=0.219 Sum_probs=69.8
Q ss_pred CcEEeeeCCCCC--CcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEe
Q 036017 105 LERMYLLNCTNL--PFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLR 182 (283)
Q Consensus 105 L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 182 (283)
+..++++.|+.. .+.+..+..-..|+..++++|.+. .+|..+...++.++.+++..|.+ ..+|..+..++.|+.++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEI-SDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhh-hhchHHHhhhHHhhhcc
Confidence 445566666432 233444555556667778877754 36655554677777888877663 34555577777888888
Q ss_pred ecCCCCCCCCchhhhcCCCCcEEeecCCCccccchh
Q 036017 183 LYNCSKLESFPGILENMARLEYIDLRLTAIKELPSS 218 (283)
Q Consensus 183 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~ 218 (283)
++.|++.. .|..+..+.++..|+.-+|.+..++..
T Consensus 107 l~~N~l~~-~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 107 LRFNPLNA-EPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cccCcccc-chHHHHHHHhHHHhcCCCCccccCcHH
Confidence 87766554 444445567777777777777666554
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=1.7e-06 Score=67.70 Aligned_cols=97 Identities=20% Similarity=0.192 Sum_probs=53.0
Q ss_pred CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCC--CCCCCCCCCCcEEeeeCC
Q 036017 36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTR--MPDLSETPNLERMYLLNC 113 (283)
Q Consensus 36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~ 113 (283)
+++.|+..||.+.++.....|+.|+.|.++-|.+..+. .+..|.+|+.|+++.|.+... +..+.++|+|++|++..|
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 45566666666666655556666666666666666553 245566666666666553221 123455666666666555
Q ss_pred CCCCcch-----hhccCCCCCcEEE
Q 036017 114 TNLPFIS-----SSIENLNNLSMLR 133 (283)
Q Consensus 114 ~~~~~~~-----~~~~~~~~L~~L~ 133 (283)
.-.+..+ ..+..+|+|+.|+
T Consensus 99 PCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 99 PCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CcccccchhHHHHHHHHcccchhcc
Confidence 4433222 1234555555553
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.37 E-value=9.4e-05 Score=57.55 Aligned_cols=89 Identities=27% Similarity=0.212 Sum_probs=55.0
Q ss_pred cCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcc---cchhhhhccCCccEEEccCCCCCC--CCCCCC
Q 036017 26 LDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVE---LLWEEKKEAFKLKSVDLCNSQNLT--RMPDLS 100 (283)
Q Consensus 26 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~ 100 (283)
+......+. .++.+++.++.+.++..+-.+++|+.|.++.|++. .+.-...++++|+++++++|++-. .+.++.
T Consensus 35 ~~gl~d~~~-~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 35 LGGLTDEFV-ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred ccccccccc-chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence 344455566 77788877777777666667788888888887433 233334456777777777776321 123445
Q ss_pred CCCCCcEEeeeCCCC
Q 036017 101 ETPNLERMYLLNCTN 115 (283)
Q Consensus 101 ~~~~L~~L~l~~~~~ 115 (283)
.+.+|..|++.+|..
T Consensus 114 ~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSV 128 (260)
T ss_pred hhcchhhhhcccCCc
Confidence 555666666666543
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=1.1e-05 Score=63.35 Aligned_cols=97 Identities=21% Similarity=0.152 Sum_probs=76.4
Q ss_pred CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccch--hhhhcc
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLW--EEKKEA 79 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--~~l~~~ 79 (283)
.+.|+|++-+|.+.. ......+| .|+.|.++-|.+.++.+...|.+|++|++..|.+..+. ..+.++
T Consensus 19 ~~vkKLNcwg~~L~D----------Isic~kMp-~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknl 87 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDD----------ISICEKMP-LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNL 87 (388)
T ss_pred HHhhhhcccCCCccH----------HHHHHhcc-cceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcC
Confidence 456778887776652 23356788 99999999999999988889999999999999999765 468899
Q ss_pred CCccEEEccCCCCCCCCCC------CCCCCCCcEEe
Q 036017 80 FKLKSVDLCNSQNLTRMPD------LSETPNLERMY 109 (283)
Q Consensus 80 ~~L~~L~l~~~~~~~~~~~------~~~~~~L~~L~ 109 (283)
++|+.|.+..|.....-+. +.-+|+|+.|+
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999999988765444321 45678888886
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.51 E-value=0.0019 Score=50.43 Aligned_cols=103 Identities=18% Similarity=0.139 Sum_probs=70.3
Q ss_pred CCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCc--c-ccchhhhcCCCccEEecccccCCC--CCccccCCCccc
Q 036017 175 LKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAI--K-ELPSSVEHLEGLKELRMEYCYKLS--KLPDNLGSLRSL 249 (283)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l--~-~~~~~~~~~~~L~~L~l~~~~~~~--~l~~~~~~l~~L 249 (283)
...++.+++.++..++- ..+..+++|++|.++.|.. . .++..+..+++|+++++++|.... .+ ..+..+++|
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELENL 118 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcch
Confidence 44566666666555432 2345678999999999944 4 666666778999999999976542 22 234667788
Q ss_pred ceeecCCccccccc----HHhhccCCCCceeeccC
Q 036017 250 KRLHTGKSAISQLP----SSIADLKQVDGLSFYGC 280 (283)
Q Consensus 250 ~~L~l~~~~i~~~~----~~~~~~~~L~~L~l~~c 280 (283)
..|++.+|..+.+. ..+.-+++|++|+-...
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 89999998887432 24456788888775543
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.34 E-value=0.026 Score=39.79 Aligned_cols=117 Identities=18% Similarity=0.238 Sum_probs=54.0
Q ss_pred CcCCCcccCceEEEecCCCCCccCCCC--CCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCC--CCCCC
Q 036017 28 QGLDYLPEELRYLHWHGYPLRTLPTNL--STDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMP--DLSET 102 (283)
Q Consensus 28 ~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~--~~~~~ 102 (283)
..+..+. +|+.+.+.. .+..++... ++++|+.+.+.++ +..+.. .+.++.+++.+.+... ...++ .+..+
T Consensus 6 ~~F~~~~-~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~ 80 (129)
T PF13306_consen 6 NAFYNCS-NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNC 80 (129)
T ss_dssp TTTTT-T-T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-
T ss_pred HHHhCCC-CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--cccccccccccc
Confidence 3456676 788888875 455565443 6778888888774 555443 3556778888888652 22222 56778
Q ss_pred CCCcEEeeeCCCCCCcch-hhccCCCCCcEEEecCCCCcCCChhHhhcCCCcc
Q 036017 103 PNLERMYLLNCTNLPFIS-SSIENLNNLSMLRLEGCKILGPFPAFISLSLTNL 154 (283)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 154 (283)
++++.+.+..+ ...++ ..+..+ +++.+.+..+ . ..++.....++++|
T Consensus 81 ~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~~-~-~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPSN-I-TKIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT---BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred ccccccccCcc--ccEEchhhhcCC-CceEEEECCC-c-cEECCccccccccC
Confidence 88888888653 22322 335565 7888877652 2 22343333255554
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.28 E-value=0.026 Score=39.75 Aligned_cols=78 Identities=21% Similarity=0.285 Sum_probs=28.9
Q ss_pred CCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCC--CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcE
Q 036017 55 STDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMP--DLSETPNLERMYLLNCTNLPFISSSIENLNNLSM 131 (283)
Q Consensus 55 ~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 131 (283)
++.+|+.+.+.. .+..+.. .+.++.+|+.+.+... ...++ .+..+++++.+.+.. .........+..+++++.
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 455666666553 3333332 2444555666665543 22222 345555566665543 111111122334555555
Q ss_pred EEecC
Q 036017 132 LRLEG 136 (283)
Q Consensus 132 L~l~~ 136 (283)
+.+..
T Consensus 86 i~~~~ 90 (129)
T PF13306_consen 86 IDIPS 90 (129)
T ss_dssp EEETT
T ss_pred cccCc
Confidence 55543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.82 E-value=0.0034 Score=29.25 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=10.5
Q ss_pred cceeecCCcccccccHHh
Q 036017 249 LKRLHTGKSAISQLPSSI 266 (283)
Q Consensus 249 L~~L~l~~~~i~~~~~~~ 266 (283)
|++|++++|.++.+|..+
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 556666666666555543
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.51 E-value=0.0071 Score=26.14 Aligned_cols=15 Identities=20% Similarity=0.456 Sum_probs=6.6
Q ss_pred ccceeecCCcccccc
Q 036017 248 SLKRLHTGKSAISQL 262 (283)
Q Consensus 248 ~L~~L~l~~~~i~~~ 262 (283)
+|+.|++++|.++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455555555555544
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.28 E-value=0.0096 Score=27.68 Aligned_cols=16 Identities=44% Similarity=0.796 Sum_probs=7.5
Q ss_pred CcEEeecCCCccccch
Q 036017 202 LEYIDLRLTAIKELPS 217 (283)
Q Consensus 202 L~~l~l~~~~l~~~~~ 217 (283)
|++|++++|.++.+|.
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 4444454444444443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.13 E-value=0.00058 Score=59.42 Aligned_cols=34 Identities=21% Similarity=0.399 Sum_probs=16.5
Q ss_pred cccceeecCCcccc-----cccHHhhccCCCCceeeccC
Q 036017 247 RSLKRLHTGKSAIS-----QLPSSIADLKQVDGLSFYGC 280 (283)
Q Consensus 247 ~~L~~L~l~~~~i~-----~~~~~~~~~~~L~~L~l~~c 280 (283)
..++.++++.|.|+ .+...+..+++++++.+.++
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n 300 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN 300 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC
Confidence 34455555555554 22334444555555555444
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.29 E-value=0.012 Score=44.49 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=39.0
Q ss_pred CCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCc-c--ccchhhhcCCCccEEecccccCCCCC-ccccCCCcccceee
Q 036017 178 LSWLRLYNCSKLESFPGILENMARLEYIDLRLTAI-K--ELPSSVEHLEGLKELRMEYCYKLSKL-PDNLGSLRSLKRLH 253 (283)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l-~--~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~ 253 (283)
++.++-+++.+...--..+..+++++.+.+.+|.- . .+...-.-.++|+.|++++|+.+++- ...+.++++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 45555555444443334455556666666655432 2 11111124456666666666666422 23345556666665
Q ss_pred cCC
Q 036017 254 TGK 256 (283)
Q Consensus 254 l~~ 256 (283)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 554
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.69 E-value=0.02 Score=43.29 Aligned_cols=81 Identities=21% Similarity=0.274 Sum_probs=40.3
Q ss_pred CCcceEEecCCCCccc-chhhhhccCCccEEEccCCCCCCCC--CCCC-CCCCCcEEeeeCCCCCCcch-hhccCCCCCc
Q 036017 56 TDKLVVLNLPCSNVEL-LWEEKKEAFKLKSVDLCNSQNLTRM--PDLS-ETPNLERMYLLNCTNLPFIS-SSIENLNNLS 130 (283)
Q Consensus 56 ~~~L~~l~l~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~-~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~ 130 (283)
-..++.++-+++.+.. -.+.+.+++.++.|.+.+|...... ..++ -.++|+.|++++|.-+++.. ..+..+++|+
T Consensus 100 ~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 100 NVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred cceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 3456666666665552 2244556666666666666544331 1121 24556666665555444322 2234445555
Q ss_pred EEEecC
Q 036017 131 MLRLEG 136 (283)
Q Consensus 131 ~L~l~~ 136 (283)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 554443
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.53 E-value=0.11 Score=25.04 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=16.2
Q ss_pred CcccceeecCCcccccccHHh
Q 036017 246 LRSLKRLHTGKSAISQLPSSI 266 (283)
Q Consensus 246 l~~L~~L~l~~~~i~~~~~~~ 266 (283)
+++|+.|++++|.|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 357888888888888887654
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.53 E-value=0.11 Score=25.04 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=16.2
Q ss_pred CcccceeecCCcccccccHHh
Q 036017 246 LRSLKRLHTGKSAISQLPSSI 266 (283)
Q Consensus 246 l~~L~~L~l~~~~i~~~~~~~ 266 (283)
+++|+.|++++|.|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 357888888888888887654
No 79
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=91.50 E-value=0.12 Score=24.97 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=11.7
Q ss_pred cCCCCceeeccCCCC
Q 036017 269 LKQVDGLSFYGCRGL 283 (283)
Q Consensus 269 ~~~L~~L~l~~c~~l 283 (283)
|++|++|++++|++|
T Consensus 1 c~~L~~L~l~~C~~i 15 (26)
T smart00367 1 CPNLRELDLSGCTNI 15 (26)
T ss_pred CCCCCEeCCCCCCCc
Confidence 577888888888764
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.57 E-value=0.0075 Score=52.62 Aligned_cols=86 Identities=26% Similarity=0.331 Sum_probs=39.8
Q ss_pred CCCCCeEeecCCCCCCC----CchhhhcCCC-CcEEeecCCCccc-----cchhhhcC-CCccEEecccccCCC----CC
Q 036017 175 LKSLSWLRLYNCSKLES----FPGILENMAR-LEYIDLRLTAIKE-----LPSSVEHL-EGLKELRMEYCYKLS----KL 239 (283)
Q Consensus 175 ~~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~~l~l~~~~l~~-----~~~~~~~~-~~L~~L~l~~~~~~~----~l 239 (283)
..++++|++..|..+.. ....+...++ +..+++..|.+.. ....+..+ ..++.+++..|.... .+
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 34455555555544421 1112222233 4445555555541 12222233 445666666655442 23
Q ss_pred ccccCCCcccceeecCCcccc
Q 036017 240 PDNLGSLRSLKRLHTGKSAIS 260 (283)
Q Consensus 240 ~~~~~~l~~L~~L~l~~~~i~ 260 (283)
...+..+++++.+.+++|.+.
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHhhhHHHHHhhcccCccc
Confidence 344455556666666666654
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.04 E-value=0.38 Score=22.61 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=7.9
Q ss_pred cccceeecCCcccc
Q 036017 247 RSLKRLHTGKSAIS 260 (283)
Q Consensus 247 ~~L~~L~l~~~~i~ 260 (283)
++|+.|++++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45667777776665
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.02 E-value=0.53 Score=22.79 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=15.0
Q ss_pred cccceeecCCcccccccH
Q 036017 247 RSLKRLHTGKSAISQLPS 264 (283)
Q Consensus 247 ~~L~~L~l~~~~i~~~~~ 264 (283)
++|+.|++++|+++++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 468889999999988876
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=77.04 E-value=0.074 Score=41.31 Aligned_cols=84 Identities=18% Similarity=0.154 Sum_probs=54.5
Q ss_pred CCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeec
Q 036017 175 LKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHT 254 (283)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 254 (283)
....+.|+++.+.... +...++.+..+..++++.|.+.-.|..++....+..++...| .++..|.++.+.++++.++.
T Consensus 41 ~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred cceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchhhh
Confidence 3444455554433321 223344556677777877777777777777777777776653 35567778888888888888
Q ss_pred CCcccc
Q 036017 255 GKSAIS 260 (283)
Q Consensus 255 ~~~~i~ 260 (283)
..+.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 887765
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=76.32 E-value=1.7 Score=38.28 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=17.4
Q ss_pred CCCCcEEeecCCCcc---ccchhhhcCCCccEEecccc
Q 036017 199 MARLEYIDLRLTAIK---ELPSSVEHLEGLKELRMEYC 233 (283)
Q Consensus 199 ~~~L~~l~l~~~~l~---~~~~~~~~~~~L~~L~l~~~ 233 (283)
.+.+..+.+++|++. .+.......|+|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 344555555555444 22223345555666666654
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.59 E-value=2.3 Score=20.57 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=11.6
Q ss_pred cccceeecCCcccccc
Q 036017 247 RSLKRLHTGKSAISQL 262 (283)
Q Consensus 247 ~~L~~L~l~~~~i~~~ 262 (283)
.+|+.|++++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4677888888887644
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=73.37 E-value=0.13 Score=40.00 Aligned_cols=86 Identities=17% Similarity=0.158 Sum_probs=68.0
Q ss_pred hhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccHHhhccCCCCc
Q 036017 195 ILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDG 274 (283)
Q Consensus 195 ~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~ 274 (283)
.+......+.+|++.|.+..+-.-+.-++.+..|+++.+ .+..+|..+.+...++.++...|..+..|......|.+++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 344566788899988887766556666777888999874 4667788888888889999989999988999999999998
Q ss_pred eeeccCC
Q 036017 275 LSFYGCR 281 (283)
Q Consensus 275 L~l~~c~ 281 (283)
++..+++
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 8876553
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=69.15 E-value=3.4 Score=20.22 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=11.8
Q ss_pred cccceeecCCcccc
Q 036017 247 RSLKRLHTGKSAIS 260 (283)
Q Consensus 247 ~~L~~L~l~~~~i~ 260 (283)
++|++|++++|.++
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 47889999999887
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=66.95 E-value=4.8 Score=35.65 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=33.5
Q ss_pred CCCcceEEecCCCCcccch--hhh-hccCCccEEEccCCCC-CCCCCCC--CCCCCCcEEeeeCCCCCC
Q 036017 55 STDKLVVLNLPCSNVELLW--EEK-KEAFKLKSVDLCNSQN-LTRMPDL--SETPNLERMYLLNCTNLP 117 (283)
Q Consensus 55 ~~~~L~~l~l~~~~~~~~~--~~l-~~~~~L~~L~l~~~~~-~~~~~~~--~~~~~L~~L~l~~~~~~~ 117 (283)
+.+.+..+.+++|++.++. .++ ...|+|+.|++++|.. ......+ .....|++|.+.+|+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 4566777777777665432 122 2357777777777621 1111112 123446777777766544
No 89
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=28.63 E-value=30 Score=16.57 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=8.5
Q ss_pred CceeEEeeccccCC
Q 036017 3 NLRLLKFYLHNLRG 16 (283)
Q Consensus 3 ~L~~l~l~~~~~~~ 16 (283)
.||.|.+....|.+
T Consensus 1 sLKtL~L~~v~f~~ 14 (26)
T PF07723_consen 1 SLKTLHLDSVVFSD 14 (26)
T ss_pred CCeEEEeeEEEECC
Confidence 36777776655543
No 90
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=24.41 E-value=1.3e+02 Score=16.31 Aligned_cols=10 Identities=30% Similarity=0.700 Sum_probs=6.3
Q ss_pred cccCceEEEe
Q 036017 33 LPEELRYLHW 42 (283)
Q Consensus 33 ~~~~L~~L~l 42 (283)
+|..+++|.+
T Consensus 10 iP~~l~~L~~ 19 (44)
T PF05725_consen 10 IPSSLKSLIF 19 (44)
T ss_pred eCCCCeEEEE
Confidence 4446677776
Done!