Query 036017
Match_columns 283
No_of_seqs 134 out of 2997
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 14:26:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.6E-31 5.4E-36 244.2 21.6 247 33-281 393-715 (768)
2 3rgz_A Protein brassinosteroid 100.0 4.5E-31 1.5E-35 241.2 20.3 245 36-281 369-691 (768)
3 3v47_A TOLL-like receptor 5B a 100.0 2.5E-30 8.4E-35 223.2 21.0 271 2-281 30-406 (455)
4 2id5_A Lingo-1, leucine rich r 100.0 1.2E-29 4E-34 220.2 23.5 270 2-281 32-331 (477)
5 4fmz_A Internalin; leucine ric 100.0 2.8E-29 9.6E-34 209.2 24.3 259 1-281 65-344 (347)
6 2id5_A Lingo-1, leucine rich r 100.0 1.4E-29 4.8E-34 219.7 23.1 247 34-281 31-307 (477)
7 4eco_A Uncharacterized protein 100.0 2.6E-29 8.7E-34 225.0 19.5 264 2-281 305-598 (636)
8 3t6q_A CD180 antigen; protein- 100.0 1.3E-28 4.5E-33 219.7 24.1 248 3-260 255-513 (606)
9 4eco_A Uncharacterized protein 100.0 3.2E-30 1.1E-34 230.8 13.3 266 1-280 248-576 (636)
10 3t6q_A CD180 antigen; protein- 100.0 7.4E-29 2.5E-33 221.3 21.2 269 1-281 277-558 (606)
11 2z7x_B TOLL-like receptor 1, v 100.0 3.7E-29 1.3E-33 219.4 18.3 80 2-91 45-126 (520)
12 3o6n_A APL1; leucine-rich repe 100.0 1.5E-28 5.2E-33 207.9 21.4 265 2-280 45-349 (390)
13 1ogq_A PGIP-2, polygalacturona 100.0 7.1E-30 2.4E-34 209.7 11.6 244 36-282 51-303 (313)
14 1xku_A Decorin; proteoglycan, 100.0 4.6E-28 1.6E-32 200.5 22.4 264 3-281 53-330 (330)
15 4fmz_A Internalin; leucine ric 100.0 1.3E-27 4.5E-32 199.1 25.2 258 1-281 43-322 (347)
16 2ft3_A Biglycan; proteoglycan, 100.0 6.2E-28 2.1E-32 199.9 20.0 242 36-282 55-332 (332)
17 1ogq_A PGIP-2, polygalacturona 100.0 7.2E-29 2.5E-33 203.7 14.1 249 2-261 50-306 (313)
18 4ecn_A Leucine-rich repeat pro 100.0 9.5E-28 3.2E-32 219.3 22.7 264 2-281 548-838 (876)
19 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.3E-28 8E-33 216.1 18.2 131 150-281 351-508 (562)
20 4ecn_A Leucine-rich repeat pro 100.0 1.6E-28 5.4E-33 224.4 17.3 265 1-280 490-816 (876)
21 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-28 4.1E-33 219.9 15.7 264 2-281 285-556 (606)
22 3oja_B Anopheles plasmodium-re 100.0 9.2E-28 3.1E-32 213.6 21.2 247 30-280 71-355 (597)
23 3o6n_A APL1; leucine-rich repe 100.0 4E-27 1.4E-31 199.2 22.2 244 32-281 43-329 (390)
24 3v47_A TOLL-like receptor 5B a 100.0 3.1E-27 1E-31 203.8 21.8 248 33-281 28-382 (455)
25 4fcg_A Uncharacterized protein 100.0 1.3E-27 4.4E-32 197.4 17.4 224 34-262 81-316 (328)
26 4fcg_A Uncharacterized protein 100.0 3.9E-27 1.3E-31 194.5 19.4 219 2-233 81-311 (328)
27 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-27 4.1E-32 213.5 17.6 250 25-281 277-532 (606)
28 1o6v_A Internalin A; bacterial 100.0 1.1E-26 3.9E-31 200.8 23.0 78 1-90 67-144 (466)
29 1xku_A Decorin; proteoglycan, 100.0 3.5E-26 1.2E-30 189.2 24.1 260 3-281 32-304 (330)
30 2z81_A CD282 antigen, TOLL-lik 100.0 5E-27 1.7E-31 207.1 20.0 150 2-161 26-181 (549)
31 1o6v_A Internalin A; bacterial 100.0 3.4E-26 1.2E-30 197.8 24.5 254 2-280 46-341 (466)
32 2z7x_B TOLL-like receptor 1, v 100.0 6.2E-27 2.1E-31 205.2 19.9 154 124-281 321-479 (520)
33 2z81_A CD282 antigen, TOLL-lik 99.9 2.5E-27 8.5E-32 209.1 16.5 127 1-136 49-181 (549)
34 3oja_B Anopheles plasmodium-re 99.9 2.1E-26 7.1E-31 204.9 21.9 244 33-281 50-335 (597)
35 3j0a_A TOLL-like receptor 5; m 99.9 1.6E-26 5.5E-31 213.2 21.5 270 2-281 24-373 (844)
36 3j0a_A TOLL-like receptor 5; m 99.9 1.8E-26 6.3E-31 212.8 20.7 268 1-281 47-392 (844)
37 1ziw_A TOLL-like receptor 3; i 99.9 5.6E-26 1.9E-30 205.3 22.6 223 58-281 382-620 (680)
38 1ziw_A TOLL-like receptor 3; i 99.9 4.9E-26 1.7E-30 205.6 21.5 271 2-281 25-364 (680)
39 2z63_A TOLL-like receptor 4, v 99.9 1.2E-26 4E-31 205.6 16.5 250 25-281 273-529 (570)
40 2ft3_A Biglycan; proteoglycan, 99.9 7.7E-26 2.6E-30 187.3 20.4 240 36-281 34-305 (332)
41 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3E-26 1E-30 202.7 19.0 266 2-281 52-484 (562)
42 2z66_A Variable lymphocyte rec 99.9 1.4E-26 4.9E-31 189.5 15.4 225 35-260 28-261 (306)
43 3bz5_A Internalin-J, INLJ; leu 99.9 2.3E-25 7.8E-30 191.7 22.7 207 1-237 41-247 (457)
44 2z63_A TOLL-like receptor 4, v 99.9 1.7E-25 5.7E-30 198.2 20.1 263 2-280 28-383 (570)
45 4g8a_A TOLL-like receptor 4; l 99.9 5.6E-25 1.9E-29 197.0 22.9 128 3-139 53-185 (635)
46 3bz5_A Internalin-J, INLJ; leu 99.9 4.6E-25 1.6E-29 189.8 21.5 250 1-281 63-350 (457)
47 2z80_A TOLL-like receptor 2, v 99.9 7.9E-26 2.7E-30 188.8 16.2 242 36-281 53-312 (353)
48 1ozn_A Reticulon 4 receptor; N 99.9 3.2E-25 1.1E-29 179.7 18.7 246 34-281 31-285 (285)
49 2z80_A TOLL-like receptor 2, v 99.9 2.9E-25 9.8E-30 185.4 18.3 248 2-260 52-314 (353)
50 2z66_A Variable lymphocyte rec 99.9 8.4E-26 2.9E-30 185.0 12.8 255 2-267 28-295 (306)
51 3zyi_A Leucine-rich repeat-con 99.9 2.7E-24 9.1E-29 185.3 21.6 241 37-281 56-301 (452)
52 1ozn_A Reticulon 4 receptor; N 99.9 2.9E-24 9.9E-29 174.0 19.8 221 38-260 14-238 (285)
53 3zyj_A Leucine-rich repeat-con 99.9 3E-24 1E-28 184.3 20.7 222 36-259 65-291 (440)
54 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-26 4.8E-31 190.4 5.6 238 30-280 30-272 (317)
55 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-26 3.6E-31 191.2 3.8 238 2-257 34-272 (317)
56 3zyi_A Leucine-rich repeat-con 99.9 7.9E-24 2.7E-28 182.4 21.8 225 34-260 74-303 (452)
57 3zyj_A Leucine-rich repeat-con 99.9 9.9E-24 3.4E-28 181.1 21.6 242 36-281 44-290 (440)
58 1wwl_A Monocyte differentiatio 99.9 1.5E-25 5.1E-30 183.9 6.4 242 31-281 40-307 (312)
59 3oja_A Leucine-rich immune mol 99.9 7.9E-25 2.7E-29 189.9 11.0 235 31-278 31-270 (487)
60 3g06_A SSPH2 (leucine-rich rep 99.9 8.6E-23 2.9E-27 181.0 24.0 238 3-281 41-295 (622)
61 3oja_A Leucine-rich immune mol 99.9 1.8E-24 6.1E-29 187.7 9.5 236 2-255 34-270 (487)
62 1jl5_A Outer protein YOPM; leu 99.9 1.6E-22 5.6E-27 173.8 20.7 226 36-280 132-406 (454)
63 1z7x_W Ribonuclease inhibitor; 99.9 3.3E-25 1.1E-29 191.4 2.2 274 3-281 86-409 (461)
64 1jl5_A Outer protein YOPM; leu 99.9 6.3E-23 2.2E-27 176.4 16.0 201 36-262 92-292 (454)
65 1z7x_W Ribonuclease inhibitor; 99.9 2.8E-25 9.5E-30 191.9 0.8 227 2-233 28-294 (461)
66 2z62_A TOLL-like receptor 4, v 99.9 4E-22 1.4E-26 160.7 18.1 197 36-234 29-235 (276)
67 3rfs_A Internalin B, repeat mo 99.9 6.1E-23 2.1E-27 165.1 11.0 173 36-210 42-215 (272)
68 1wwl_A Monocyte differentiatio 99.9 9.1E-23 3.1E-27 167.3 12.0 202 56-261 94-310 (312)
69 3rfs_A Internalin B, repeat mo 99.9 1.1E-21 3.7E-26 157.8 16.3 225 36-270 20-246 (272)
70 2ast_B S-phase kinase-associat 99.9 3.6E-22 1.2E-26 165.5 12.9 200 57-257 70-282 (336)
71 2z62_A TOLL-like receptor 4, v 99.9 2.4E-21 8.2E-26 156.1 17.2 220 39-260 11-237 (276)
72 2ca6_A RAN GTPase-activating p 99.9 4.8E-23 1.6E-27 174.0 7.2 234 25-260 23-316 (386)
73 2o6q_A Variable lymphocyte rec 99.9 8.9E-21 3E-25 152.3 19.8 199 36-236 17-218 (270)
74 3g06_A SSPH2 (leucine-rich rep 99.9 7.9E-21 2.7E-25 168.4 20.8 228 2-267 61-305 (622)
75 1p9a_G Platelet glycoprotein I 99.9 7.1E-21 2.4E-25 154.3 18.3 202 30-236 6-208 (290)
76 2ast_B S-phase kinase-associat 99.9 1.7E-22 5.7E-27 167.4 8.7 242 4-262 49-308 (336)
77 2o6q_A Variable lymphocyte rec 99.9 1.4E-20 4.7E-25 151.2 19.7 201 57-260 16-218 (270)
78 4glp_A Monocyte differentiatio 99.9 7E-21 2.4E-25 155.9 16.1 221 55-281 62-305 (310)
79 1h6u_A Internalin H; cell adhe 99.9 2E-20 7E-25 153.0 18.6 193 31-236 38-230 (308)
80 1p9a_G Platelet glycoprotein I 99.9 1.8E-20 6.1E-25 151.9 17.7 199 55-260 8-208 (290)
81 1h6u_A Internalin H; cell adhe 99.9 1.9E-20 6.5E-25 153.1 17.9 212 39-264 23-234 (308)
82 2ca6_A RAN GTPase-activating p 99.9 4.9E-23 1.7E-27 173.9 1.7 234 48-281 22-314 (386)
83 3ogk_B Coronatine-insensitive 99.9 7.8E-22 2.7E-26 175.5 9.1 276 1-281 191-524 (592)
84 2xwt_C Thyrotropin receptor; s 99.9 6.2E-21 2.1E-25 150.4 12.8 208 47-283 23-239 (239)
85 3ogk_B Coronatine-insensitive 99.8 1.9E-21 6.6E-26 172.9 9.2 275 1-281 163-499 (592)
86 3goz_A Leucine-rich repeat-con 99.8 1E-21 3.5E-26 164.4 6.8 245 6-260 2-297 (362)
87 3goz_A Leucine-rich repeat-con 99.8 1.5E-21 5E-26 163.4 7.2 228 3-234 23-295 (362)
88 4glp_A Monocyte differentiatio 99.8 4.9E-21 1.7E-25 156.9 7.2 220 36-261 65-308 (310)
89 4g8a_A TOLL-like receptor 4; l 99.8 7.7E-19 2.6E-23 157.2 20.3 226 33-260 348-580 (635)
90 2xwt_C Thyrotropin receptor; s 99.8 4.8E-19 1.7E-23 139.6 14.9 195 33-234 29-237 (239)
91 2p1m_B Transport inhibitor res 99.8 5.3E-21 1.8E-25 170.1 3.7 107 174-281 395-517 (594)
92 3m19_A Variable lymphocyte rec 99.8 2.3E-18 7.8E-23 136.7 17.6 178 57-237 14-193 (251)
93 3m19_A Variable lymphocyte rec 99.8 1.9E-18 6.7E-23 137.1 17.0 176 36-213 15-192 (251)
94 4ay9_X Follicle-stimulating ho 99.8 2.8E-18 9.6E-23 142.8 15.7 236 5-257 12-256 (350)
95 2p1m_B Transport inhibitor res 99.8 2.7E-20 9.2E-25 165.6 2.4 62 219-281 428-492 (594)
96 1h6t_A Internalin B; cell adhe 99.8 1.7E-17 5.7E-22 134.5 17.0 190 36-237 25-214 (291)
97 1h6t_A Internalin B; cell adhe 99.8 1.6E-17 5.4E-22 134.7 15.8 174 31-216 43-216 (291)
98 4ay9_X Follicle-stimulating ho 99.8 4.9E-18 1.7E-22 141.3 13.1 235 38-279 12-255 (350)
99 4ezg_A Putative uncharacterize 99.8 1.3E-17 4.4E-22 127.4 12.9 151 78-234 42-192 (197)
100 4ezg_A Putative uncharacterize 99.7 2.2E-17 7.4E-22 126.2 13.7 153 100-260 41-194 (197)
101 3cvr_A Invasion plasmid antige 99.7 2.9E-17 1E-21 144.0 15.6 184 36-243 60-250 (571)
102 1m9s_A Internalin B; cell inva 99.7 6.3E-18 2.2E-22 149.7 11.3 173 31-215 40-212 (605)
103 1m9s_A Internalin B; cell inva 99.7 6.3E-17 2.1E-21 143.3 16.9 190 36-237 22-211 (605)
104 2o6s_A Variable lymphocyte rec 99.7 7.1E-17 2.4E-21 124.4 15.1 51 40-91 12-63 (208)
105 3cvr_A Invasion plasmid antige 99.7 5.3E-17 1.8E-21 142.4 15.3 186 58-269 60-253 (571)
106 2o6s_A Variable lymphocyte rec 99.7 9.6E-17 3.3E-21 123.7 14.4 176 60-244 10-186 (208)
107 2v9t_B SLIT homolog 2 protein 99.7 4.4E-16 1.5E-20 121.0 12.3 151 106-260 14-165 (220)
108 3e6j_A Variable lymphocyte rec 99.7 1E-15 3.5E-20 119.6 14.4 151 82-236 21-172 (229)
109 2v70_A SLIT-2, SLIT homolog 2 99.7 5.7E-16 2E-20 120.3 12.4 151 106-260 14-166 (220)
110 1xeu_A Internalin C; cellular 99.7 1.7E-16 5.9E-21 126.6 9.1 167 36-214 20-186 (263)
111 1xeu_A Internalin C; cellular 99.7 4.6E-16 1.6E-20 124.2 11.1 170 55-237 17-186 (263)
112 2v70_A SLIT-2, SLIT homolog 2 99.7 1.3E-15 4.4E-20 118.3 13.3 150 38-213 14-166 (220)
113 2v9t_B SLIT homolog 2 protein 99.7 1.9E-15 6.5E-20 117.4 13.6 114 99-213 52-165 (220)
114 2xot_A Amphoterin-induced prot 99.7 1.5E-15 5.2E-20 126.8 13.7 175 37-213 20-202 (361)
115 2xot_A Amphoterin-induced prot 99.6 1.5E-15 5E-20 126.9 12.9 174 60-236 21-202 (361)
116 2ell_A Acidic leucine-rich nuc 99.6 8.4E-16 2.9E-20 114.3 9.8 136 126-264 23-164 (168)
117 1dce_A Protein (RAB geranylger 99.6 7.1E-19 2.4E-23 154.8 -8.4 208 55-277 347-567 (567)
118 2ell_A Acidic leucine-rich nuc 99.6 2.1E-15 7.3E-20 112.1 10.5 129 150-281 22-158 (168)
119 3e6j_A Variable lymphocyte rec 99.6 1.1E-14 3.6E-19 113.9 14.8 150 36-189 20-172 (229)
120 2je0_A Acidic leucine-rich nuc 99.6 1.5E-15 5.1E-20 110.6 8.8 128 150-279 15-149 (149)
121 3sb4_A Hypothetical leucine ri 99.6 8.8E-15 3E-19 120.6 12.8 216 56-277 100-328 (329)
122 2je0_A Acidic leucine-rich nuc 99.6 4.9E-15 1.7E-19 107.8 8.2 126 127-255 17-148 (149)
123 1dce_A Protein (RAB geranylger 99.5 1.1E-16 3.9E-21 140.8 -3.6 176 99-281 345-544 (567)
124 1a9n_A U2A', U2A'; complex (nu 99.5 3.9E-14 1.3E-18 106.0 8.5 134 123-261 15-154 (176)
125 1a9n_A U2A', U2A'; complex (nu 99.5 6.9E-14 2.3E-18 104.7 8.0 131 99-234 15-151 (176)
126 4b8c_D Glucose-repressible alc 99.5 1.2E-14 4.2E-19 131.6 4.4 191 56-257 172-369 (727)
127 4b8c_D Glucose-repressible alc 99.5 1.6E-14 5.4E-19 130.9 4.8 189 33-233 172-369 (727)
128 1w8a_A SLIT protein; signaling 99.5 2.9E-13 9.9E-18 102.7 10.2 32 39-71 12-43 (192)
129 1w8a_A SLIT protein; signaling 99.5 6.4E-13 2.2E-17 100.8 11.6 128 60-190 11-140 (192)
130 2wfh_A SLIT homolog 2 protein 99.4 1.8E-12 6.2E-17 98.3 13.0 125 38-165 13-139 (193)
131 2o6r_A Variable lymphocyte rec 99.4 4.8E-12 1.6E-16 94.7 13.0 108 127-235 28-136 (177)
132 1ds9_A Outer arm dynein; leuci 99.4 5.6E-15 1.9E-19 112.8 -3.3 125 146-276 43-180 (198)
133 2wfh_A SLIT homolog 2 protein 99.4 4.4E-12 1.5E-16 96.2 10.8 109 103-213 31-139 (193)
134 2o6r_A Variable lymphocyte rec 99.4 9.5E-12 3.2E-16 93.0 12.0 13 58-70 29-41 (177)
135 4fdw_A Leucine rich hypothetic 99.3 1E-10 3.6E-15 98.6 18.3 231 36-278 136-378 (401)
136 3un9_A NLR family member X1; l 99.3 4.3E-13 1.5E-17 112.1 2.6 158 79-236 71-252 (372)
137 3sb4_A Hypothetical leucine ri 99.3 2.2E-11 7.5E-16 100.3 12.6 245 1-253 48-327 (329)
138 1ds9_A Outer arm dynein; leuci 99.3 8.6E-14 2.9E-18 106.2 -2.1 110 168-281 40-151 (198)
139 4fdw_A Leucine rich hypothetic 99.3 5E-10 1.7E-14 94.5 19.3 214 36-260 158-383 (401)
140 3un9_A NLR family member X1; l 99.3 1.5E-12 5.2E-17 108.8 2.8 159 102-260 71-252 (372)
141 2r9u_A Variable lymphocyte rec 99.2 1.8E-10 6.3E-15 85.7 10.2 103 130-236 15-118 (174)
142 3g39_A Variable lymphocyte rec 99.1 2.2E-10 7.7E-15 84.9 9.8 104 129-236 11-115 (170)
143 2r9u_A Variable lymphocyte rec 99.1 2.1E-10 7.2E-15 85.4 9.0 107 154-263 14-121 (174)
144 3g39_A Variable lymphocyte rec 99.1 7.5E-10 2.6E-14 82.0 10.8 102 37-139 11-114 (170)
145 2ra8_A Uncharacterized protein 99.0 6.4E-10 2.2E-14 92.3 8.1 178 79-260 106-320 (362)
146 2ra8_A Uncharacterized protein 98.9 3.3E-09 1.1E-13 88.0 8.6 56 30-87 168-226 (362)
147 2ifg_A High affinity nerve gro 98.9 3.5E-09 1.2E-13 87.7 8.5 103 156-260 12-116 (347)
148 4fs7_A Uncharacterized protein 98.9 7.3E-08 2.5E-12 81.2 15.7 257 1-278 70-374 (394)
149 2ifg_A High affinity nerve gro 98.8 1.3E-08 4.4E-13 84.2 9.2 104 107-213 12-116 (347)
150 4fs7_A Uncharacterized protein 98.8 1.9E-07 6.5E-12 78.6 15.0 233 28-275 156-393 (394)
151 4gt6_A Cell surface protein; l 98.8 1.2E-06 3.9E-11 73.8 19.3 103 172-279 261-366 (394)
152 1io0_A Tropomodulin; LRR prote 98.8 8.3E-09 2.8E-13 77.4 5.3 111 150-260 34-164 (185)
153 4gt6_A Cell surface protein; l 98.7 1.1E-06 3.8E-11 73.9 18.4 123 150-279 263-387 (394)
154 3e4g_A ATP synthase subunit S, 98.5 7.2E-08 2.5E-12 70.9 4.4 85 176-260 61-153 (176)
155 1io0_A Tropomodulin; LRR prote 98.5 2.3E-07 7.7E-12 69.6 6.8 113 121-234 30-162 (185)
156 4h09_A Hypothetical leucine ri 98.5 4.8E-05 1.6E-09 63.5 21.2 103 150-256 238-342 (379)
157 3e4g_A ATP synthase subunit S, 98.4 2.7E-07 9.2E-12 67.8 5.2 85 153-238 62-154 (176)
158 4h09_A Hypothetical leucine ri 98.3 0.00011 3.9E-09 61.2 19.5 125 150-278 215-341 (379)
159 3rw6_A Nuclear RNA export fact 98.0 1.1E-05 3.7E-10 63.7 6.3 41 174-214 168-210 (267)
160 3rw6_A Nuclear RNA export fact 98.0 6.8E-06 2.3E-10 64.8 5.0 79 197-277 167-258 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 0.00011 3.9E-09 54.9 6.6 111 150-260 39-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 0.0004 1.4E-08 51.9 4.9 113 168-280 33-167 (197)
163 3rfe_A Platelet glycoprotein I 95.6 0.022 7.5E-07 39.5 5.3 56 203-260 11-68 (130)
164 3rfe_A Platelet glycoprotein I 94.9 0.067 2.3E-06 37.0 6.0 12 59-70 33-44 (130)
165 2lz0_A Uncharacterized protein 51.8 31 0.0011 22.1 4.9 35 76-112 16-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-31 Score=244.16 Aligned_cols=247 Identities=21% Similarity=0.321 Sum_probs=204.2
Q ss_pred cccCceEEEecCCCCC-ccCCCC-CCCcceEEecCCCCcc-cchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEE
Q 036017 33 LPEELRYLHWHGYPLR-TLPTNL-STDKLVVLNLPCSNVE-LLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERM 108 (283)
Q Consensus 33 ~~~~L~~L~l~~~~~~-~~~~~~-~~~~L~~l~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L 108 (283)
++ +|++|++++|.+. .+|..+ .+++|+.|++++|.+. .++..+..+++|+.|++.+|.....++ .+..+++|++|
T Consensus 393 ~~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 393 KN-TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp TC-CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cC-CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence 55 7888888887774 555555 7888888888888877 566777888888888888888666666 57788889999
Q ss_pred eeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCC
Q 036017 109 YLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSK 188 (283)
Q Consensus 109 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 188 (283)
++++|...+..|..+..+++|++|++++|.+.+.+|..+. .+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 9988887777888888889999999999888777888777 888899999999888878888888889999999988876
Q ss_pred CCCCchh----------------------------------------------------------------------hhc
Q 036017 189 LESFPGI----------------------------------------------------------------------LEN 198 (283)
Q Consensus 189 ~~~~~~~----------------------------------------------------------------------~~~ 198 (283)
.+.+|.. +..
T Consensus 551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~ 630 (768)
T 3rgz_A 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630 (768)
T ss_dssp ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence 6554432 223
Q ss_pred CCCCcEEeecCCCcc-ccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc-cccHHhhccCCCCcee
Q 036017 199 MARLEYIDLRLTAIK-ELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS-QLPSSIADLKQVDGLS 276 (283)
Q Consensus 199 ~~~L~~l~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~ 276 (283)
+++|+.+++++|.++ .+|..++.++.|+.|++++|...+.+|..++.+++|+.|++++|.++ .+|..+..++.|++|+
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 467889999999988 78888999999999999999888899999999999999999999998 8889999999999999
Q ss_pred eccCC
Q 036017 277 FYGCR 281 (283)
Q Consensus 277 l~~c~ 281 (283)
+++|+
T Consensus 711 ls~N~ 715 (768)
T 3rgz_A 711 LSNNN 715 (768)
T ss_dssp CCSSE
T ss_pred CcCCc
Confidence 99874
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=4.5e-31 Score=241.20 Aligned_cols=245 Identities=22% Similarity=0.280 Sum_probs=201.8
Q ss_pred CceEEEecCCCC-CccCCCC-C--CCcceEEecCCCCcc-cchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEe
Q 036017 36 ELRYLHWHGYPL-RTLPTNL-S--TDKLVVLNLPCSNVE-LLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMY 109 (283)
Q Consensus 36 ~L~~L~l~~~~~-~~~~~~~-~--~~~L~~l~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~ 109 (283)
+|++|++++|.+ +.++... . +++|+.+++++|.+. .++..+.++++|+.|++++|.....++ .++.+++|+.|+
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 455555555544 1223222 2 567888888888777 566778888999999999988665666 578889999999
Q ss_pred eeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCC
Q 036017 110 LLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKL 189 (283)
Q Consensus 110 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 189 (283)
+++|...+..|..+..+++|++|++++|.+.+.+|..+. .+++|+.|++++|++.+..|.+++.+++|++|++++|.+.
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc
Confidence 999887778888888999999999999988877888777 8999999999999888888888899999999999999998
Q ss_pred CCCchhhhcCCCCcEEeecCCCcc-ccchhh-------------------------------------------------
Q 036017 190 ESFPGILENMARLEYIDLRLTAIK-ELPSSV------------------------------------------------- 219 (283)
Q Consensus 190 ~~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~------------------------------------------------- 219 (283)
+.+|..+..+++|+.+++++|.+. .+|..+
T Consensus 528 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 607 (768)
T 3rgz_A 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence 888888999999999999998876 455432
Q ss_pred ---------------------hcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc-cccHHhhccCCCCceee
Q 036017 220 ---------------------EHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS-QLPSSIADLKQVDGLSF 277 (283)
Q Consensus 220 ---------------------~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l 277 (283)
+.+++|+.|++++|...+.+|..++.++.|+.|++++|.++ .+|..++++++|+.|++
T Consensus 608 ~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdL 687 (768)
T 3rgz_A 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687 (768)
T ss_dssp GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred ccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEEC
Confidence 23467889999999888899999999999999999999998 88999999999999999
Q ss_pred ccCC
Q 036017 278 YGCR 281 (283)
Q Consensus 278 ~~c~ 281 (283)
++|+
T Consensus 688 s~N~ 691 (768)
T 3rgz_A 688 SSNK 691 (768)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 9885
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=2.5e-30 Score=223.21 Aligned_cols=271 Identities=14% Similarity=0.143 Sum_probs=175.2
Q ss_pred CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCC-ccCC-CC-CCCcceEEecCCCCcccc-hhhhh
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLR-TLPT-NL-STDKLVVLNLPCSNVELL-WEEKK 77 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~-~~-~~~~L~~l~l~~~~~~~~-~~~l~ 77 (283)
++|++|++++|.+.+ ..+..+..++ +|++|+++++.+. .++. .+ ++++|++|++++|.+..+ +..+.
T Consensus 30 ~~l~~L~Ls~n~i~~--------~~~~~~~~l~-~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 100 (455)
T 3v47_A 30 AHVNYVDLSLNSIAE--------LNETSFSRLQ-DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN 100 (455)
T ss_dssp TTCCEEECCSSCCCE--------ECTTTTSSCT-TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT
T ss_pred CccCEEEecCCccCc--------CChhHhccCc-cccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhcc
Confidence 457777777777664 3355566666 6666666666653 3332 22 566666666666666544 44555
Q ss_pred ccCCccEEEccCCCCCCCCC---CCCCCCCCcEEeeeCCCCCCcchhh-ccCCCCCcEEEecCCCCcCCChhHhhc----
Q 036017 78 EAFKLKSVDLCNSQNLTRMP---DLSETPNLERMYLLNCTNLPFISSS-IENLNNLSMLRLEGCKILGPFPAFISL---- 149 (283)
Q Consensus 78 ~~~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~---- 149 (283)
++++|+.|++++|.....++ .+..+++|++|++++|......+.. +..+++|++|++++|.+.+..+..+..
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~ 180 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTC
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccc
Confidence 66666666666665433211 1555666666666665544333332 455556666666555543322211110
Q ss_pred -----------------------------CC-------------------------------------------------
Q 036017 150 -----------------------------SL------------------------------------------------- 151 (283)
Q Consensus 150 -----------------------------~~------------------------------------------------- 151 (283)
.+
T Consensus 181 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp EEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred cccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhh
Confidence 11
Q ss_pred --------------CccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcccc-c
Q 036017 152 --------------TNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKEL-P 216 (283)
Q Consensus 152 --------------~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~-~ 216 (283)
++|+.|++++|.+....+..++.+++|++|++++|.+.+..+..+..+++|++|++++|.++.+ +
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh
Confidence 3455555555554444555677788888888888877766666778888888999988888855 4
Q ss_pred hhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccH-HhhccCCCCceeeccCC
Q 036017 217 SSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPS-SIADLKQVDGLSFYGCR 281 (283)
Q Consensus 217 ~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~c~ 281 (283)
..+..+++|+.|++++|...+..+..+..+++|++|++++|.++.++. .+..+++|++|++++|+
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 567888899999999887666667778888999999999999887765 45788899999998875
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=220.22 Aligned_cols=270 Identities=17% Similarity=0.193 Sum_probs=164.9
Q ss_pred CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccC-CCC-CCCcceEEecCCCCcccchh-hhhc
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLP-TNL-STDKLVVLNLPCSNVELLWE-EKKE 78 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~-~~~~L~~l~l~~~~~~~~~~-~l~~ 78 (283)
+++++|++++|.+.+ ..+..+..++ +|++|+++++.+..+. ..+ ++++|+.|++++|.+..++. .+.+
T Consensus 32 ~~l~~L~L~~n~l~~--------~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 102 (477)
T 2id5_A 32 TETRLLDLGKNRIKT--------LNQDEFASFP-HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG 102 (477)
T ss_dssp TTCSEEECCSSCCCE--------ECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTT
T ss_pred CCCcEEECCCCccce--------ECHhHccCCC-CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccC
Confidence 356777777776664 3345566666 7777777777665552 233 66777777777776666554 2456
Q ss_pred cCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEE
Q 036017 79 AFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVL 157 (283)
Q Consensus 79 ~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 157 (283)
+++|+.|++++|......+ .+..+++|++|++++|......+..+..+++|++|++++|.+.+..+..+. .+++|+.|
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L 181 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS-HLHGLIVL 181 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHT-TCTTCCEE
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhc-ccCCCcEE
Confidence 6677777776666443333 456666666666666554444444555666666666666655442222333 55666666
Q ss_pred eccCCcCcccchhhhcCCCC------------------------CCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcc
Q 036017 158 DLAHCKRLNRLSASICKLKS------------------------LSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIK 213 (283)
Q Consensus 158 ~l~~~~~~~~~~~~l~~~~~------------------------L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 213 (283)
++++|.+....+..+..+++ |++|++++|.+....+..+..+++|+.|++++|.++
T Consensus 182 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp EEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred eCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence 66655544433334444444 455555554444322245566677777777777776
Q ss_pred ccch-hhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccH-HhhccCCCCceeeccCC
Q 036017 214 ELPS-SVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPS-SIADLKQVDGLSFYGCR 281 (283)
Q Consensus 214 ~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~c~ 281 (283)
.++. .+..+++|+.|++++|...+..+..+..+++|+.|++++|.++.++. .+..+++|++|++++|+
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 5443 35667777777777766555556667777888888888888876664 45677888888887764
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=2.8e-29 Score=209.19 Aligned_cols=259 Identities=19% Similarity=0.282 Sum_probs=150.5
Q ss_pred CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccC
Q 036017 1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAF 80 (283)
Q Consensus 1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~ 80 (283)
+++|++|++++|.+.+ ++. +..++ +|++|++++|.+..++....+++|++|++++|.+..++. +..++
T Consensus 65 ~~~L~~L~l~~n~i~~---------~~~-~~~l~-~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~ 132 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITD---------ISP-LSNLV-KLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANLT 132 (347)
T ss_dssp CTTCCEEECCSSCCCC---------CGG-GTTCT-TCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCT
T ss_pred cCCccEEEccCCcccc---------chh-hhcCC-cCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccCC
Confidence 3566666666665553 222 55566 677777777766665544466777777777776666554 55666
Q ss_pred CccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhH--------------
Q 036017 81 KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAF-------------- 146 (283)
Q Consensus 81 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------- 146 (283)
+|+.|++++|.....++.+..+++|++|++++|..... +. +..+++|++|++++|.+.+ ++..
T Consensus 133 ~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n 209 (347)
T 4fmz_A 133 KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV-TP-IANLTDLYSLSLNYNQIED-ISPLASLTSLHYFTAYVN 209 (347)
T ss_dssp TCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCSEEECTTSCCCC-CGGGGGCTTCCEEECCSS
T ss_pred ceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCc-hh-hccCCCCCEEEccCCcccc-cccccCCCccceeecccC
Confidence 77777776665555555566666666666666543322 21 4566666666666665433 2221
Q ss_pred -------hhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhh
Q 036017 147 -------ISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSV 219 (283)
Q Consensus 147 -------~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~ 219 (283)
+. .+++|+.|++++|.+....+ +..+++|++|++++|.+.. + +.+..+++|+.+++++|.++.++ .+
T Consensus 210 ~l~~~~~~~-~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~~-~~ 283 (347)
T 4fmz_A 210 QITDITPVA-NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDIS-VL 283 (347)
T ss_dssp CCCCCGGGG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCCG-GG
T ss_pred CCCCCchhh-cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCCh-hh
Confidence 22 34455555555544332221 4455566666665554443 2 34555666666666666666553 35
Q ss_pred hcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccHHhhccCCCCceeeccCC
Q 036017 220 EHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 220 ~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c~ 281 (283)
..+++|+.|++++|...+..+..+..+++|+.|++++|.++.++. +..+++|++|++++|+
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence 566666667666665554555556666777777777777765544 6667777777776664
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=219.73 Aligned_cols=247 Identities=19% Similarity=0.203 Sum_probs=196.9
Q ss_pred ccCceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccc-hhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEe
Q 036017 34 PEELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELL-WEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMY 109 (283)
Q Consensus 34 ~~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~ 109 (283)
|.+++.|+++++.+..++. .+ .+++|+.|++++|.+..+ +..+.++++|+.|++++|......+ .+..+++|++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 4489999999999987754 34 899999999999999976 5678899999999999998443333 478999999999
Q ss_pred eeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCC
Q 036017 110 LLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKL 189 (283)
Q Consensus 110 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 189 (283)
+++|......+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+....+..+..+++|+.|++.+|.+.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS-GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSST-TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhcc-CCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 999877666677789999999999999987765555565 8999999999999877666677899999999999998776
Q ss_pred CCCchhhhcCC------------------------CCcEEeecCCCccccch-hhhcCCCccEEecccccCCCCCccccC
Q 036017 190 ESFPGILENMA------------------------RLEYIDLRLTAIKELPS-SVEHLEGLKELRMEYCYKLSKLPDNLG 244 (283)
Q Consensus 190 ~~~~~~~~~~~------------------------~L~~l~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~~~ 244 (283)
...+..+..++ +|+.|++++|.++.++. .+..+++|+.|++++|...+..+..+.
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence 54333444444 45555556666666664 467888889999988776555556678
Q ss_pred CCcccceeecCCcccccc-cHHhhccCCCCceeeccCC
Q 036017 245 SLRSLKRLHTGKSAISQL-PSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 245 ~l~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~c~ 281 (283)
.+++|+.|++++|.++.+ +..+..+++|++|++++|.
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 888999999999988855 5677888999999998873
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=2.6e-29 Score=224.96 Aligned_cols=264 Identities=16% Similarity=0.162 Sum_probs=216.5
Q ss_pred CCceeEEeeccccCCCCCCCcccccCC--cCCCcccCceEEEecCCCCC-ccCCCCCCCcceEEecCCCCcccchhhhhc
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQ--GLDYLPEELRYLHWHGYPLR-TLPTNLSTDKLVVLNLPCSNVELLWEEKKE 78 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~ 78 (283)
++|++|++++|.++ .+|. .+..++ +|++|++++|.+. .+|.+..+++|+.|++++|.+..++..+..
T Consensus 305 ~~L~~L~L~~n~l~---------~ip~~~~l~~l~-~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~ 374 (636)
T 4eco_A 305 EKIQIIYIGYNNLK---------TFPVETSLQKMK-KLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCG 374 (636)
T ss_dssp GTCCEEECCSSCCS---------SCCCHHHHTTCT-TCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEE
T ss_pred CCCCEEECCCCcCC---------ccCchhhhccCC-CCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhh
Confidence 57777777777766 4677 788888 9999999999986 888333889999999999999988888888
Q ss_pred cCC-ccEEEccCCCCCCCCC-CCCC--CCCCcEEeeeCCCCCCcchhhcc-------CCCCCcEEEecCCCCcCCChhHh
Q 036017 79 AFK-LKSVDLCNSQNLTRMP-DLSE--TPNLERMYLLNCTNLPFISSSIE-------NLNNLSMLRLEGCKILGPFPAFI 147 (283)
Q Consensus 79 ~~~-L~~L~l~~~~~~~~~~-~~~~--~~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~ 147 (283)
+++ |+.|++++|... .++ .+.. +++|+.|++++|......|..+. .+++|++|++++|.+. .+|..+
T Consensus 375 l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~ 452 (636)
T 4eco_A 375 FTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKEL 452 (636)
T ss_dssp ECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHH
T ss_pred hcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHH
Confidence 988 999999999855 666 3444 34899999999887776666666 7789999999999876 467665
Q ss_pred hcCCCccCEEeccCCcCcccchhh-hcCC-------CCCCeEeecCCCCCCCCchhhh--cCCCCcEEeecCCCccccch
Q 036017 148 SLSLTNLEVLDLAHCKRLNRLSAS-ICKL-------KSLSWLRLYNCSKLESFPGILE--NMARLEYIDLRLTAIKELPS 217 (283)
Q Consensus 148 ~~~~~~L~~L~l~~~~~~~~~~~~-l~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~l~l~~~~l~~~~~ 217 (283)
...+++|+.|++++|.+. .++.. +... ++|++|++++|.+. .+|..+. .+++|+.|++++|.++.+|.
T Consensus 453 ~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~ 530 (636)
T 4eco_A 453 FSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPT 530 (636)
T ss_dssp HHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCC
T ss_pred HccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcCh
Confidence 547899999999998876 44433 2222 28999999998887 6777776 89999999999999999999
Q ss_pred hhhcCCCccEEecc------cccCCCCCccccCCCcccceeecCCcccccccHHhhccCCCCceeeccCC
Q 036017 218 SVEHLEGLKELRME------YCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 218 ~~~~~~~L~~L~l~------~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c~ 281 (283)
.+..+++|+.|+++ +|...+.+|..+..+++|+.|++++|.++.+|..+. ++|++|++++|+
T Consensus 531 ~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 531 QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCT
T ss_pred hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCC
Confidence 99999999999995 455567888889999999999999999998887655 899999999985
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.3e-28 Score=219.68 Aligned_cols=248 Identities=18% Similarity=0.180 Sum_probs=148.4
Q ss_pred CceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCC-CCCcceEEecCCCCcccc-hhhhhccC
Q 036017 3 NLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNL-STDKLVVLNLPCSNVELL-WEEKKEAF 80 (283)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~-~~~l~~~~ 80 (283)
+|+++++++|.+.+ ..+..+..++ +|++|+++++.+..+|..+ .+++|+.|++++|.+..+ +..+..++
T Consensus 255 ~L~~L~l~~n~l~~--------~~~~~~~~l~-~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 325 (606)
T 3t6q_A 255 SVESINLQKHYFFN--------ISSNTFHCFS-GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325 (606)
T ss_dssp EEEEEECTTCCCSS--------CCTTTTTTCT-TCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred ceeEEEeecCccCc--------cCHHHhcccc-CCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccC
Confidence 57788888887765 3345577788 8888888888888887766 788888888888888765 44677788
Q ss_pred CccEEEccCCCCCCCCC--CCCCCCCCcEEeeeCCCCCCcc--hhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCE
Q 036017 81 KLKSVDLCNSQNLTRMP--DLSETPNLERMYLLNCTNLPFI--SSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEV 156 (283)
Q Consensus 81 ~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 156 (283)
+|+.|++++|.....++ .+..+++|++|++++|...... +..+..+++|++|++++|.+.+..+..+. .+++|+.
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~ 404 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLEL 404 (606)
T ss_dssp TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT-TCTTCSE
T ss_pred cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc-CCccCCe
Confidence 88888888876554444 3667777777777776554332 44556666677777766665443344443 5556666
Q ss_pred EeccCCcCcccchh-hhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccc--cc--hhhhcCCCccEEecc
Q 036017 157 LDLAHCKRLNRLSA-SICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKE--LP--SSVEHLEGLKELRME 231 (283)
Q Consensus 157 L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~--~~--~~~~~~~~L~~L~l~ 231 (283)
|++++|.+....+. .+..+++|++|++++|.+....+..+..+++|++|++++|.+.. ++ ..+..+++|+.|+++
T Consensus 405 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls 484 (606)
T 3t6q_A 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484 (606)
T ss_dssp EECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECT
T ss_pred EECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECC
Confidence 66666554333222 24455555555555555544444444455555555555554442 11 223444445555554
Q ss_pred cccCCCCCccccCCCcccceeecCCcccc
Q 036017 232 YCYKLSKLPDNLGSLRSLKRLHTGKSAIS 260 (283)
Q Consensus 232 ~~~~~~~l~~~~~~l~~L~~L~l~~~~i~ 260 (283)
+|...+..|..+..+++|+.|++++|.++
T Consensus 485 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCccCccChhhhccccCCCEEECCCCccC
Confidence 44433333344444444444444444444
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=3.2e-30 Score=230.75 Aligned_cols=266 Identities=16% Similarity=0.175 Sum_probs=161.9
Q ss_pred CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCC-CC--ccCCCC-CC------CcceEEecCCCCcc
Q 036017 1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYP-LR--TLPTNL-ST------DKLVVLNLPCSNVE 70 (283)
Q Consensus 1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~--~~~~~~-~~------~~L~~l~l~~~~~~ 70 (283)
+++|++|++++|.+.+ .+|..+..++ +|++|++++|. +. .+|..+ .+ ++|+.|++++|.+.
T Consensus 248 l~~L~~L~L~~n~l~~--------~~p~~l~~l~-~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLT--------KLPTFLKALP-EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp CTTCCEEEEECCTTCS--------SCCTTTTTCS-SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred cCCCCEEEecCCcCCc--------cChHHHhcCC-CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 5789999999998887 7788888888 89999988887 64 355544 33 78888888888888
Q ss_pred cchh--hhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCC-CcEEEecCCCCcCCChhHh
Q 036017 71 LLWE--EKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNN-LSMLRLEGCKILGPFPAFI 147 (283)
Q Consensus 71 ~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~ 147 (283)
.+|. .+.++++|+.|++++|.....++.++.+++|+.|++++|... .+|..+..+++ |++|++++|.+. .+|..+
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~ 396 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIF 396 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCC
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhh
Confidence 7777 777888888888888875545666666777777777776543 55666666666 777777777655 455443
Q ss_pred hcCC--CccCEEeccCCcCcccchhhhc-------CCCCCCeEeecCCCCCCCCc-hhhhcCCC----------------
Q 036017 148 SLSL--TNLEVLDLAHCKRLNRLSASIC-------KLKSLSWLRLYNCSKLESFP-GILENMAR---------------- 201 (283)
Q Consensus 148 ~~~~--~~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~-~~~~~~~~---------------- 201 (283)
. .. ++|+.|++++|.+.+..|..+. .+++|++|++++|.+.. +| ..+..+++
T Consensus 397 ~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~~i~~ 474 (636)
T 4eco_A 397 D-AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLTEIPK 474 (636)
T ss_dssp C-TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred h-hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCCCcCH
Confidence 2 22 2566666666555444444343 34455555555544442 22 22233444
Q ss_pred ---------------CcEEeecCCCccccchhhh--cCCCccEEecccccCCCCCccccCCCcccceeecC------Ccc
Q 036017 202 ---------------LEYIDLRLTAIKELPSSVE--HLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTG------KSA 258 (283)
Q Consensus 202 ---------------L~~l~l~~~~l~~~~~~~~--~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~------~~~ 258 (283)
|+.|++++|.++.+|..+. .+++|+.|++++|...+ +|..+..+++|+.|+++ +|.
T Consensus 475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 475 NSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp SSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCB
T ss_pred HHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCc
Confidence 5555555555554444443 55555555555544333 44444555555555552 233
Q ss_pred cc-cccHHhhccCCCCceeeccC
Q 036017 259 IS-QLPSSIADLKQVDGLSFYGC 280 (283)
Q Consensus 259 i~-~~~~~~~~~~~L~~L~l~~c 280 (283)
+. .+|..+..+++|++|++++|
T Consensus 554 l~~~~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 554 TLREWPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSS
T ss_pred ccccChHHHhcCCCCCEEECCCC
Confidence 32 44445555555555555554
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=7.4e-29 Score=221.27 Aligned_cols=269 Identities=18% Similarity=0.169 Sum_probs=229.5
Q ss_pred CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcc-cchh-hh
Q 036017 1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVE-LLWE-EK 76 (283)
Q Consensus 1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~-~~~~-~l 76 (283)
+++|++|++++|.+. .+|..+..++ +|++|++++|.+..+++ .+ .+++|+.+++++|.+. .++. .+
T Consensus 277 l~~L~~L~l~~n~l~---------~lp~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 277 FSGLQELDLTATHLS---------ELPSGLVGLS-TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp CTTCSEEECTTSCCS---------CCCSSCCSCT-TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred ccCCCEEeccCCccC---------CCChhhcccc-cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 478999999999877 5788889999 99999999999977643 34 8999999999999877 4543 47
Q ss_pred hccCCccEEEccCCCCCCCC--C-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhH-hhcCCC
Q 036017 77 KEAFKLKSVDLCNSQNLTRM--P-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAF-ISLSLT 152 (283)
Q Consensus 77 ~~~~~L~~L~l~~~~~~~~~--~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~ 152 (283)
..+++|+.|++++|...... + .+..+++|++|++++|......+..+..+++|++|++++|.+.+..+.. +. .++
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~ 425 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ-NLH 425 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT-TCT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh-Ccc
Confidence 78999999999999865442 3 5789999999999998776666778889999999999999877655444 44 889
Q ss_pred ccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCC---CchhhhcCCCCcEEeecCCCcccc-chhhhcCCCccEE
Q 036017 153 NLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLES---FPGILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKEL 228 (283)
Q Consensus 153 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L 228 (283)
+|+.|++++|.+....+..++.+++|++|++++|.+.+. .+..+..+++|+.|++++|.++.+ |..+..+++|+.|
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 505 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence 999999999988777787889999999999999988753 235688899999999999999965 5678999999999
Q ss_pred ecccccCCCCCccccCCCcccceeecCCccccccc-HHhhccCCCCceeeccCC
Q 036017 229 RMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLP-SSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 229 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~c~ 281 (283)
++++|...+..+..+..++.| .|++++|.++.++ ..+..+++|++|++++|+
T Consensus 506 ~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 506 DLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp ECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred ECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 999998878788899999999 9999999999654 567899999999999986
No 11
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.7e-29 Score=219.37 Aligned_cols=80 Identities=20% Similarity=0.235 Sum_probs=50.4
Q ss_pred CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCccc--chhhhhcc
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVEL--LWEEKKEA 79 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~l~~~ 79 (283)
++|++|++++|.+++ ..|..+..++ +|++|++++|.+..+|.. .+++|++|++++|.+.. +|..++++
T Consensus 45 ~~L~~L~Ls~n~l~~--------~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l 114 (520)
T 2z7x_B 45 SKLRILIISHNRIQY--------LDISVFKFNQ-ELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNM 114 (520)
T ss_dssp TTCCEEECCSSCCCE--------EEGGGGTTCT-TCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGC
T ss_pred ccccEEecCCCccCC--------cChHHhhccc-CCCEEecCCCceeecCcc-ccCCccEEeccCCccccccchhhhccC
Confidence 456666666666553 3355666666 777777777766666655 66677777777776664 34556666
Q ss_pred CCccEEEccCCC
Q 036017 80 FKLKSVDLCNSQ 91 (283)
Q Consensus 80 ~~L~~L~l~~~~ 91 (283)
++|+.|++++|.
T Consensus 115 ~~L~~L~L~~n~ 126 (520)
T 2z7x_B 115 SQLKFLGLSTTH 126 (520)
T ss_dssp TTCCEEEEEESS
T ss_pred CcceEEEecCcc
Confidence 666666666654
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.5e-28 Score=207.94 Aligned_cols=265 Identities=16% Similarity=0.159 Sum_probs=129.6
Q ss_pred CCceeEEeeccccCCCCCCCcccccCCc-CCCcccCceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccch-hhhh
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQG-LDYLPEELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELLW-EEKK 77 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~-~~l~ 77 (283)
+++++++++++.+. .+|.. +..++ +|++|+++++.+..++. .+ .+++|+.|++++|.+..++ ..+.
T Consensus 45 ~~l~~l~l~~~~l~---------~l~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR---------KLPAALLDSFR-QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp CCCSEEEEESCEES---------EECTHHHHHCC-CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCceEEEecCCchh---------hCChhHhcccc-cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence 45666666666655 34433 45566 66666666666655543 22 5666666666666666543 3355
Q ss_pred ccCCccEEEccCCCCCCCCC-C-CCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhh-------
Q 036017 78 EAFKLKSVDLCNSQNLTRMP-D-LSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFIS------- 148 (283)
Q Consensus 78 ~~~~L~~L~l~~~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------- 148 (283)
++++|+.|++++|... .++ . +..+++|++|++++|......+..+..+++|++|++++|.+.+.-...+.
T Consensus 115 ~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l 193 (390)
T 3o6n_A 115 NVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV 193 (390)
T ss_dssp TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEEC
T ss_pred CCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeec
Confidence 6666666666666533 333 2 45666666666666554444444456666666666666654431101000
Q ss_pred --------cCCCccCEEeccCCcCcccc-------------------hhhhcCCCCCCeEeecCCCCCCCCchhhhcCCC
Q 036017 149 --------LSLTNLEVLDLAHCKRLNRL-------------------SASICKLKSLSWLRLYNCSKLESFPGILENMAR 201 (283)
Q Consensus 149 --------~~~~~L~~L~l~~~~~~~~~-------------------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 201 (283)
...++|+.|++++|.+.... ...+..+++|++|++++|.+.+..+..+..+++
T Consensus 194 ~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (390)
T 3o6n_A 194 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273 (390)
T ss_dssp CSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred ccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHcccccc
Confidence 01123333333333321110 012334444444444444444333344444444
Q ss_pred CcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccHHhhccCCCCceeeccC
Q 036017 202 LEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGC 280 (283)
Q Consensus 202 L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c 280 (283)
|+.|++++|.++.++..+..+++|+.|++++|. +..++..+..+++|+.|++++|.++.++ +..+++|++|++++|
T Consensus 274 L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 274 LERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp CCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred CCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCC
Confidence 444444444444444434444445555554442 2233333444444555555555444442 334445555555444
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=7.1e-30 Score=209.70 Aligned_cols=244 Identities=16% Similarity=0.220 Sum_probs=212.1
Q ss_pred CceEEEecCCCCC---ccCCCC-CCCcceEEecCC-CCcc-cchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEE
Q 036017 36 ELRYLHWHGYPLR---TLPTNL-STDKLVVLNLPC-SNVE-LLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERM 108 (283)
Q Consensus 36 ~L~~L~l~~~~~~---~~~~~~-~~~~L~~l~l~~-~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L 108 (283)
+++.|+++++.+. .++..+ .+++|++|++++ +.+. .++..+.++++|+.|++++|.+...++ .+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 8999999999985 577666 899999999995 7777 677888999999999999998665666 58889999999
Q ss_pred eeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCC-ccCEEeccCCcCcccchhhhcCCCCCCeEeecCCC
Q 036017 109 YLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLT-NLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCS 187 (283)
Q Consensus 109 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 187 (283)
++++|......|..+..+++|++|++++|.+.+.+|..+. .++ +|+.|++++|.+.+..+..+..+. |++|++++|.
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 9999887767888899999999999999998777888887 776 999999999987777788888777 9999999988
Q ss_pred CCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc-cccHHh
Q 036017 188 KLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS-QLPSSI 266 (283)
Q Consensus 188 ~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~ 266 (283)
+.+..+..+..+++|+.|++++|.++..+..+..+++|++|++++|...+.+|..+..+++|+.|++++|.++ .+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~- 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG- 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-
Confidence 8877888888999999999999999855555788899999999998877788889999999999999999998 66664
Q ss_pred hccCCCCceeeccCCC
Q 036017 267 ADLKQVDGLSFYGCRG 282 (283)
Q Consensus 267 ~~~~~L~~L~l~~c~~ 282 (283)
..+++|+.+++.+|+.
T Consensus 288 ~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKC 303 (313)
T ss_dssp TTGGGSCGGGTCSSSE
T ss_pred ccccccChHHhcCCCC
Confidence 7899999999998873
No 14
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=4.6e-28 Score=200.47 Aligned_cols=264 Identities=15% Similarity=0.124 Sum_probs=151.6
Q ss_pred CceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCcc-CCCC-CCCcceEEecCCCCcccchhhhhccC
Q 036017 3 NLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTL-PTNL-STDKLVVLNLPCSNVELLWEEKKEAF 80 (283)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~-~~~~L~~l~l~~~~~~~~~~~l~~~~ 80 (283)
++++|++++|.+++ ..+..+..++ +|++|+++++.+..+ +..+ .+++|++|++++|.+..++..+ .+
T Consensus 53 ~l~~L~L~~n~i~~--------~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~--~~ 121 (330)
T 1xku_A 53 DTALLDLQNNKITE--------IKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PK 121 (330)
T ss_dssp TCCEEECCSSCCCC--------BCTTTTTTCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--CT
T ss_pred CCeEEECCCCcCCE--------eChhhhccCC-CCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh--cc
Confidence 45555555555543 2223455555 666666666655444 2233 5566666666666555554433 24
Q ss_pred CccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCC--cchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEE
Q 036017 81 KLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLP--FISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVL 157 (283)
Q Consensus 81 ~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 157 (283)
+|+.|++++|......+ .+..+++|+.|++++|.... ..+..+..+++|++|++++|.+.. +|..+ +++|+.|
T Consensus 122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~---~~~L~~L 197 (330)
T 1xku_A 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL---PPSLTEL 197 (330)
T ss_dssp TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC---CTTCSEE
T ss_pred cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCccc---cccCCEE
Confidence 56666666555332222 24556666666666654432 334455666666666666665443 34322 2567777
Q ss_pred eccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCC
Q 036017 158 DLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLS 237 (283)
Q Consensus 158 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~ 237 (283)
++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|..+..+++|+.|++++|...+
T Consensus 198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCc
Confidence 77776655555566667777777777776666554456667777777777777777777767777777777777765443
Q ss_pred CCccccC------CCcccceeecCCcccc--cc-cHHhhccCCCCceeeccCC
Q 036017 238 KLPDNLG------SLRSLKRLHTGKSAIS--QL-PSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 238 ~l~~~~~------~l~~L~~L~l~~~~i~--~~-~~~~~~~~~L~~L~l~~c~ 281 (283)
.-+..+. ..+.++.+++++|.++ .+ |..+..++.++.+++++|+
T Consensus 278 ~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 2223332 2356677777777665 22 3455666777777777653
No 15
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=1.3e-27 Score=199.09 Aligned_cols=258 Identities=19% Similarity=0.284 Sum_probs=179.8
Q ss_pred CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccC
Q 036017 1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAF 80 (283)
Q Consensus 1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~ 80 (283)
+++|++|+++++.+. .++ .+..++ +|++|++++|.+..++....+++|++|++++|.+..++ .+..++
T Consensus 43 l~~L~~L~l~~~~i~---------~~~-~~~~~~-~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~ 110 (347)
T 4fmz_A 43 LESITKLVVAGEKVA---------SIQ-GIEYLT-NLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLT 110 (347)
T ss_dssp HTTCSEEECCSSCCC---------CCT-TGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCT
T ss_pred cccccEEEEeCCccc---------cch-hhhhcC-CccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCC
Confidence 367999999988876 344 377788 99999999999988877558999999999999999875 488899
Q ss_pred CccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEecc
Q 036017 81 KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLA 160 (283)
Q Consensus 81 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 160 (283)
+|+.|++++|. ...++.+..+++|+.|++++|......+ .+..+++|++|++++|.+.+ .+. +. .+++|+.|+++
T Consensus 111 ~L~~L~l~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~-~~-~l~~L~~L~l~ 185 (347)
T 4fmz_A 111 NLRELYLNEDN-ISDISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-VTP-IA-NLTDLYSLSLN 185 (347)
T ss_dssp TCSEEECTTSC-CCCCGGGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-CGG-GG-GCTTCSEEECT
T ss_pred cCCEEECcCCc-ccCchhhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-chh-hc-cCCCCCEEEcc
Confidence 99999999988 4455568899999999999986665554 47899999999999998755 443 44 88999999999
Q ss_pred CCcCcccchhhhcCCCCCCeEeecCCCCCCC---------------------CchhhhcCCCCcEEeecCCCccccchhh
Q 036017 161 HCKRLNRLSASICKLKSLSWLRLYNCSKLES---------------------FPGILENMARLEYIDLRLTAIKELPSSV 219 (283)
Q Consensus 161 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---------------------~~~~~~~~~~L~~l~l~~~~l~~~~~~~ 219 (283)
+|.+....+ +..+++|+.+++++|.+... .+. +..+++|+.+++++|.++.++ .+
T Consensus 186 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~ 261 (347)
T 4fmz_A 186 YNQIEDISP--LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AV 261 (347)
T ss_dssp TSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred CCccccccc--ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-hH
Confidence 987543322 34444455555444433322 111 445555555555555555442 34
Q ss_pred hcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc-cccHHhhccCCCCceeeccCC
Q 036017 220 EHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS-QLPSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 220 ~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~c~ 281 (283)
..+++|+.|++++|... .+ +.+..+++|+.|++++|.++ ..+..+..+++|++|++++|+
T Consensus 262 ~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 262 KDLTKLKMLNVGSNQIS-DI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp TTCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred hcCCCcCEEEccCCccC-CC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 55556666666655332 22 33555666666666666666 333455666777777776664
No 16
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=6.2e-28 Score=199.88 Aligned_cols=242 Identities=14% Similarity=0.168 Sum_probs=148.7
Q ss_pred CceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccc-hhhhhccCCccEEEccCCCCC-------------------
Q 036017 36 ELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELL-WEEKKEAFKLKSVDLCNSQNL------------------- 93 (283)
Q Consensus 36 ~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~------------------- 93 (283)
++++|+++++.+..+++ .+ ++++|+.|++++|.+..+ +..+.++++|+.|++++|...
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~ 134 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNR 134 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCc
Confidence 45555555555544432 22 455555555555555443 334444555555555554422
Q ss_pred -CCCC--CCCCCCCCcEEeeeCCCCCC--cchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccc
Q 036017 94 -TRMP--DLSETPNLERMYLLNCTNLP--FISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRL 168 (283)
Q Consensus 94 -~~~~--~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 168 (283)
..++ .+..+++|+.|++++|.... ..+..+..+ +|+.|++++|.+.+ +|..+ +++|+.|++++|.+....
T Consensus 135 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~---~~~L~~L~l~~n~i~~~~ 209 (332)
T 2ft3_A 135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDL---PETLNELHLDHNKIQAIE 209 (332)
T ss_dssp CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSS---CSSCSCCBCCSSCCCCCC
T ss_pred cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCccc---cCCCCEEECCCCcCCccC
Confidence 1121 13444445555544443321 222223333 44455555444332 33222 257888888887766666
Q ss_pred hhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCC---
Q 036017 169 SASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGS--- 245 (283)
Q Consensus 169 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~--- 245 (283)
+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|..+..+++|+.|++++|......+..+..
T Consensus 210 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 289 (332)
T 2ft3_A 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF 289 (332)
T ss_dssp TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC
T ss_pred HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHcccccc
Confidence 66788889999999999888776666788899999999999999999888899999999999997655433333433
Q ss_pred ---CcccceeecCCcccc--cc-cHHhhccCCCCceeeccCCC
Q 036017 246 ---LRSLKRLHTGKSAIS--QL-PSSIADLKQVDGLSFYGCRG 282 (283)
Q Consensus 246 ---l~~L~~L~l~~~~i~--~~-~~~~~~~~~L~~L~l~~c~~ 282 (283)
.+.|+.|++++|.++ ++ +..+..++.|+.+++++|++
T Consensus 290 ~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~~ 332 (332)
T 2ft3_A 290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 332 (332)
T ss_dssp CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-----
T ss_pred ccccccccceEeecCcccccccCcccccccchhhhhhcccccC
Confidence 467889999999876 33 45678899999999998864
No 17
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=7.2e-29 Score=203.68 Aligned_cols=249 Identities=19% Similarity=0.224 Sum_probs=216.3
Q ss_pred CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecC-CCC-CccCCCC-CCCcceEEecCCCCcc-cchhhhh
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHG-YPL-RTLPTNL-STDKLVVLNLPCSNVE-LLWEEKK 77 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~-~~~~~~~-~~~~L~~l~l~~~~~~-~~~~~l~ 77 (283)
.++++|+++++.+.+ ...+|..+..++ +|++|++++ +.+ +.+|..+ .+++|++|++++|.+. .++..+.
T Consensus 50 ~~l~~L~L~~~~l~~------~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPK------PYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCCCSS------CEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred ceEEEEECCCCCccC------CcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh
Confidence 478999999998875 225678889999 999999995 776 4667666 8999999999999998 7788899
Q ss_pred ccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCCcchhhccCCC-CCcEEEecCCCCcCCChhHhhcCCCccC
Q 036017 78 EAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLPFISSSIENLN-NLSMLRLEGCKILGPFPAFISLSLTNLE 155 (283)
Q Consensus 78 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 155 (283)
++++|+.|++++|.....++ .+..+++|++|++++|...+..|..+..++ +|++|++++|.+.+..|..+. .++ |+
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~-~l~-L~ 200 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NLN-LA 200 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG-GCC-CS
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh-CCc-cc
Confidence 99999999999998776666 588999999999999887667888888888 999999999998877787776 666 99
Q ss_pred EEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcc-ccchhhhcCCCccEEeccccc
Q 036017 156 VLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIK-ELPSSVEHLEGLKELRMEYCY 234 (283)
Q Consensus 156 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~ 234 (283)
.|++++|.+....+..+..+++|++|++++|.+.+..+. +..+++|++|++++|.++ .+|..+..+++|+.|++++|.
T Consensus 201 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred EEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 999999988778888899999999999999888765554 778899999999999999 888889999999999999998
Q ss_pred CCCCCccccCCCcccceeecCCcc-ccc
Q 036017 235 KLSKLPDNLGSLRSLKRLHTGKSA-ISQ 261 (283)
Q Consensus 235 ~~~~l~~~~~~l~~L~~L~l~~~~-i~~ 261 (283)
..+.+|.. ..+++|+.+++++|. +.+
T Consensus 280 l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 280 LCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred ccccCCCC-ccccccChHHhcCCCCccC
Confidence 87778776 889999999999987 444
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=9.5e-28 Score=219.34 Aligned_cols=264 Identities=15% Similarity=0.136 Sum_probs=205.9
Q ss_pred CCceeEEeeccccCCCCCCCcccccCC--cCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhcc
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQ--GLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEA 79 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~ 79 (283)
++|++|++++|.+. .+|. .+..++ +|++|++++|.+..+|.+..+++|+.|++++|.+..++..+..+
T Consensus 548 ~~L~~L~Ls~N~L~---------~ip~~~~l~~L~-~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l 617 (876)
T 4ecn_A 548 PKIQIFYMGYNNLE---------EFPASASLQKMV-KLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAF 617 (876)
T ss_dssp TTCCEEECCSSCCC---------BCCCHHHHTTCT-TCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEE
T ss_pred CCccEEEeeCCcCC---------ccCChhhhhcCC-CCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhc
Confidence 46777777777666 5677 778888 88888888888888874337888888888888888888778888
Q ss_pred CC-ccEEEccCCCCCCCCC-CCCCC--CCCcEEeeeCCCCCCcch---hhcc--CCCCCcEEEecCCCCcCCChhHhhcC
Q 036017 80 FK-LKSVDLCNSQNLTRMP-DLSET--PNLERMYLLNCTNLPFIS---SSIE--NLNNLSMLRLEGCKILGPFPAFISLS 150 (283)
Q Consensus 80 ~~-L~~L~l~~~~~~~~~~-~~~~~--~~L~~L~l~~~~~~~~~~---~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~ 150 (283)
++ |+.|++++|... .+| .+... ++|+.|++++|...+..| ..+. .+++|+.|++++|.+. .+|..+...
T Consensus 618 ~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~ 695 (876)
T 4ecn_A 618 TDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFAT 695 (876)
T ss_dssp CTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHT
T ss_pred cccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHcc
Confidence 88 899999888754 555 34444 348888888877654332 2222 3458999999998876 477666547
Q ss_pred CCccCEEeccCCcCcccchhhhcC--------CCCCCeEeecCCCCCCCCchhhh--cCCCCcEEeecCCCccccchhhh
Q 036017 151 LTNLEVLDLAHCKRLNRLSASICK--------LKSLSWLRLYNCSKLESFPGILE--NMARLEYIDLRLTAIKELPSSVE 220 (283)
Q Consensus 151 ~~~L~~L~l~~~~~~~~~~~~l~~--------~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~l~l~~~~l~~~~~~~~ 220 (283)
+++|+.|++++|.+. .+|..+.. +++|++|++++|.+. .+|..+. .+++|+.|++++|.++.+|..+.
T Consensus 696 l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~ 773 (876)
T 4ecn_A 696 GSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL 773 (876)
T ss_dssp TCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGG
T ss_pred CCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhh
Confidence 899999999998765 44444322 238999999998777 6777776 88999999999999999988889
Q ss_pred cCCCccEEeccc------ccCCCCCccccCCCcccceeecCCcccccccHHhhccCCCCceeeccCC
Q 036017 221 HLEGLKELRMEY------CYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 221 ~~~~L~~L~l~~------~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c~ 281 (283)
.+++|+.|++++ |...+.+|..+..+++|+.|++++|.++.+|..+. ++|+.|++++|+
T Consensus 774 ~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCT
T ss_pred cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCC
Confidence 999999999976 55567788888899999999999999998887654 689999999986
No 19
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=2.3e-28 Score=216.14 Aligned_cols=131 Identities=16% Similarity=0.225 Sum_probs=68.0
Q ss_pred CCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCC--CchhhhcCCCCcEEeecCCCccc-cchh-hhcC---
Q 036017 150 SLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLES--FPGILENMARLEYIDLRLTAIKE-LPSS-VEHL--- 222 (283)
Q Consensus 150 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~l~l~~~~l~~-~~~~-~~~~--- 222 (283)
.+++|+.|++++|.+.+..+..++.+++|++|++++|.+.+. .+..+..+++|+.|++++|.++. +|.. +..+
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 344455555555444443444444455555555555444321 12233444445555555444442 3322 1222
Q ss_pred -------------------CCccEEecccccCCCCCccccCCCcccceeecCCcccccccHH-hhccCCCCceeeccCC
Q 036017 223 -------------------EGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSS-IADLKQVDGLSFYGCR 281 (283)
Q Consensus 223 -------------------~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~-~~~~~~L~~L~l~~c~ 281 (283)
++|+.|++++|. ++.+|..+..+++|+.|++++|.++.+|.. +..+++|++|++++|+
T Consensus 431 ~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CEEECCSSCCCGGGGSSCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CEEECCCCCCCcchhhhhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 456666666543 334555555666777777777777766655 6667777777776664
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.6e-28 Score=224.45 Aligned_cols=265 Identities=18% Similarity=0.167 Sum_probs=172.8
Q ss_pred CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCC-CCc--cCCC--------CCCCcceEEecCCCCc
Q 036017 1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYP-LRT--LPTN--------LSTDKLVVLNLPCSNV 69 (283)
Q Consensus 1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~--~~~~--------~~~~~L~~l~l~~~~~ 69 (283)
+++|++|++++|.+.+ .+|..+..++ +|++|++++|. +.. +|.. ..+++|+.|++++|.+
T Consensus 490 L~~L~~L~Ls~N~l~~--------~iP~~l~~L~-~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMT--------QLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp CTTCCEEEEESCTTCC--------SCCGGGGGCS-SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CCCCCEEECcCCCCCc--------cChHHHhCCC-CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 5789999999999887 7888889999 99999999997 643 5432 2456999999999998
Q ss_pred ccchh--hhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCC-CcEEEecCCCCcCCChhH
Q 036017 70 ELLWE--EKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNN-LSMLRLEGCKILGPFPAF 146 (283)
Q Consensus 70 ~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~ 146 (283)
..+|. .+.++++|+.|++++|... .++.++.+++|+.|++++|... .+|..+..+++ |+.|++++|.+. .+|..
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~ 637 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNI 637 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred CccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchh
Confidence 88887 7888999999999988855 7778888889999999887655 77777788887 888888888765 45544
Q ss_pred hhcCCC--ccCEEeccCCcCccc----------------------------chhh-hcCCCCCCeEeecCCCCCCCCchh
Q 036017 147 ISLSLT--NLEVLDLAHCKRLNR----------------------------LSAS-ICKLKSLSWLRLYNCSKLESFPGI 195 (283)
Q Consensus 147 ~~~~~~--~L~~L~l~~~~~~~~----------------------------~~~~-l~~~~~L~~L~l~~~~~~~~~~~~ 195 (283)
+. ..+ +|+.|++++|.+.+. +|.. +..+++|+.|++++|.+. .+|..
T Consensus 638 ~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~ 715 (876)
T 4ecn_A 638 FN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPEN 715 (876)
T ss_dssp CC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTT
T ss_pred hh-ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChH
Confidence 32 222 255555555544332 2222 224455555555554444 23322
Q ss_pred hhc--------CCCCcEEeecCCCccccchhhh--cCCCccEEecccccCCCCCccccCCCcccceeecCC------ccc
Q 036017 196 LEN--------MARLEYIDLRLTAIKELPSSVE--HLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGK------SAI 259 (283)
Q Consensus 196 ~~~--------~~~L~~l~l~~~~l~~~~~~~~--~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~------~~i 259 (283)
+.. +++|+.|++++|.++.+|..+. .+++|+.|++++|...+ +|..+..+++|+.|++++ |.+
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred HhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccc
Confidence 111 1255555555555555555554 55556666665554333 455555555666665544 333
Q ss_pred c-cccHHhhccCCCCceeeccC
Q 036017 260 S-QLPSSIADLKQVDGLSFYGC 280 (283)
Q Consensus 260 ~-~~~~~~~~~~~L~~L~l~~c 280 (283)
. .+|..+..+++|++|++++|
T Consensus 795 ~~~ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 795 LRQWPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp CCCCCTTGGGCSSCCEEECCSS
T ss_pred cccChHHHhcCCCCCEEECCCC
Confidence 3 45555555666666666555
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.2e-28 Score=219.91 Aligned_cols=264 Identities=17% Similarity=0.144 Sum_probs=189.7
Q ss_pred CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcc-cchhhhhccC
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVE-LLWEEKKEAF 80 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~l~~~~ 80 (283)
++|++++++++.+. .++ .+..++ +|++|++++|.++.+|.. .+++|+.+++++|... .+ .+..++
T Consensus 285 ~~L~~L~l~~~~~~---------~l~-~l~~~~-~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~--~~~~l~ 350 (606)
T 3vq2_A 285 ANVSAMSLAGVSIK---------YLE-DVPKHF-KWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF--KKVALP 350 (606)
T ss_dssp TTCSEEEEESCCCC---------CCC-CCCTTC-CCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC--CCCCCT
T ss_pred CCCCEEEecCccch---------hhh-hccccc-cCCEEEcccccCcccccC-CCCccceeeccCCcCccch--hhccCC
Confidence 46667777766654 344 556666 777777777777666655 6777777777776333 22 345677
Q ss_pred CccEEEccCCCCCCC--CC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCCh-hHhhcCCCccCE
Q 036017 81 KLKSVDLCNSQNLTR--MP-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFP-AFISLSLTNLEV 156 (283)
Q Consensus 81 ~L~~L~l~~~~~~~~--~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~ 156 (283)
+|+.|++++|..... ++ .+..+++|++|++++|.. ...+..+..+++|+.|++++|.+.+..+ ..+. .+++|+.
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~ 428 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL-SLEKLLY 428 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE-EEECCCCTTCTTCCEEECTTSEEESTTTTTTTT-TCTTCCE
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc-ccchhhccCCCCCCeeECCCCccCCccChhhhh-ccccCCE
Confidence 777777777654332 12 356677777777777653 3455566777888888888877665444 3444 7788888
Q ss_pred EeccCCcCcccchhhhcCCCCCCeEeecCCCCCCC-CchhhhcCCCCcEEeecCCCcccc-chhhhcCCCccEEeccccc
Q 036017 157 LDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLES-FPGILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKELRMEYCY 234 (283)
Q Consensus 157 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~ 234 (283)
|++++|.+....+..++.+++|++|++++|.+.+. .+..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.
T Consensus 429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence 88888877776777778888888888888777663 566677888888888888888854 4557788888888888887
Q ss_pred CCCCCccccCCCcccceeecCCcccccccHHhhccC-CCCceeeccCC
Q 036017 235 KLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLK-QVDGLSFYGCR 281 (283)
Q Consensus 235 ~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~-~L~~L~l~~c~ 281 (283)
..+..|..+..+++|+.|++++|.++.+|..+..++ +|++|++++|+
T Consensus 509 l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 509 LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp CSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCC
T ss_pred CCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCC
Confidence 666667788888888888888888888887777776 58888888875
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=9.2e-28 Score=213.64 Aligned_cols=247 Identities=15% Similarity=0.118 Sum_probs=110.0
Q ss_pred CCCcccCceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCCC-CCCCCCC
Q 036017 30 LDYLPEELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMPD-LSETPNL 105 (283)
Q Consensus 30 ~~~~~~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L 105 (283)
+..++ +|++|+++++.+..+++ .+ .+++|+.|++++|.+..++. .+.++++|+.|++++|......+. ++.+++|
T Consensus 71 ~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 71 LDSFR-QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149 (597)
T ss_dssp HHHCC-CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HccCC-CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence 34444 55555555555544432 22 45555555555555554332 234455555555555543221111 3445555
Q ss_pred cEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhh---------------cCCCccCEEeccCCcCcccc--
Q 036017 106 ERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFIS---------------LSLTNLEVLDLAHCKRLNRL-- 168 (283)
Q Consensus 106 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---------------~~~~~L~~L~l~~~~~~~~~-- 168 (283)
++|++++|......+..+..+++|++|++++|.+.+.-...+. ..+++|+.|++++|.+....
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~ 229 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 229 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc
Confidence 5555555444333333444555555555555443321000000 01223333333333221111
Q ss_pred -----------------hhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecc
Q 036017 169 -----------------SASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRME 231 (283)
Q Consensus 169 -----------------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~ 231 (283)
+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.+|..+..+++|+.|+++
T Consensus 230 ~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 230 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 309 (597)
T ss_dssp CCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECC
T ss_pred cCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECC
Confidence 123444455555555554444444444445555555555555555444444445555555555
Q ss_pred cccCCCCCccccCCCcccceeecCCcccccccHHhhccCCCCceeeccC
Q 036017 232 YCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGC 280 (283)
Q Consensus 232 ~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c 280 (283)
+|... .+|..+..+++|+.|++++|.++.++ +..+++|++|++++|
T Consensus 310 ~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 310 HNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 355 (597)
T ss_dssp SSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred CCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCC
Confidence 54322 34444444455555555555554443 344455555555544
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=4e-27 Score=199.20 Aligned_cols=244 Identities=16% Similarity=0.138 Sum_probs=191.7
Q ss_pred CcccCceEEEecCCCCCccCCCC--CCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCC-CCCCCCCCcE
Q 036017 32 YLPEELRYLHWHGYPLRTLPTNL--STDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLER 107 (283)
Q Consensus 32 ~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~ 107 (283)
.++ ++++|+++++.++.+|... .+++|+.|++++|.+..++. .+..+++|+.|++++|......+ .++.+++|++
T Consensus 43 ~l~-~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLN-NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGC-CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccC-CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 357 9999999999999998754 79999999999999997764 68889999999999998655444 4789999999
Q ss_pred EeeeCCCCCCcchhh-ccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcC------------
Q 036017 108 MYLLNCTNLPFISSS-IENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICK------------ 174 (283)
Q Consensus 108 L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------------ 174 (283)
|++++|... .++.. +..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+.......+..
T Consensus 122 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ-ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS-SCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCS
T ss_pred EECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhcc-CCCCCCEEECCCCcCCccccccccccceeeccccccc
Confidence 999998654 55544 58899999999999988764455555 8899999999998765432111111
Q ss_pred -------------------------CCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcccc-chhhhcCCCccEE
Q 036017 175 -------------------------LKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKEL 228 (283)
Q Consensus 175 -------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L 228 (283)
.++|+.|++++|.+.+. ..+..+++|+.|++++|.+..+ +..+..+++|+.|
T Consensus 200 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (390)
T 3o6n_A 200 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277 (390)
T ss_dssp EEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred ccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence 12345555555444432 4577888999999999998854 6678889999999
Q ss_pred ecccccCCCCCccccCCCcccceeecCCcccccccHHhhccCCCCceeeccCC
Q 036017 229 RMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 229 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c~ 281 (283)
++++|.. ..++.....+++|+.|++++|.++.+|..+..+++|++|++++|+
T Consensus 278 ~L~~n~l-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 278 YISNNRL-VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp ECCSSCC-CEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred ECCCCcC-cccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc
Confidence 9998754 446666678899999999999999888888899999999998875
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=3.1e-27 Score=203.83 Aligned_cols=248 Identities=20% Similarity=0.205 Sum_probs=185.6
Q ss_pred cccCceEEEecCCCCCcc-CCCC-CCCcceEEecCCCCcc-cc-hhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcE
Q 036017 33 LPEELRYLHWHGYPLRTL-PTNL-STDKLVVLNLPCSNVE-LL-WEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLER 107 (283)
Q Consensus 33 ~~~~L~~L~l~~~~~~~~-~~~~-~~~~L~~l~l~~~~~~-~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~ 107 (283)
+|+++++|+++++.+..+ +..+ ++++|++|++++|.+. .+ +..+.++++|+.|++++|......+ .++.+++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 444999999999999776 4444 8999999999999886 44 4568889999999999998665545 6899999999
Q ss_pred EeeeCCCCCCcchhh--ccCCCCCcEEEecCCCCcCCChhH-hhcCCCccCEEeccCCcCcccchhhhcC----------
Q 036017 108 MYLLNCTNLPFISSS--IENLNNLSMLRLEGCKILGPFPAF-ISLSLTNLEVLDLAHCKRLNRLSASICK---------- 174 (283)
Q Consensus 108 L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~---------- 174 (283)
|++++|......+.. +..+++|++|++++|.+.+..|.. +. .+++|+.|++++|.+....+..+..
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~ 186 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL-NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGG-GCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEE
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccC-CCCcccEEeCCCCcccccChhhhhccccccccccc
Confidence 999998776555554 789999999999999987765655 44 8999999999998765443332221
Q ss_pred ------------------------CCCCCeEeecCCCC------------------------------------------
Q 036017 175 ------------------------LKSLSWLRLYNCSK------------------------------------------ 188 (283)
Q Consensus 175 ------------------------~~~L~~L~l~~~~~------------------------------------------ 188 (283)
+++|++|++++|.+
T Consensus 187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (455)
T 3v47_A 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266 (455)
T ss_dssp CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCT
T ss_pred cccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcc
Confidence 23455555555433
Q ss_pred ---------------------CCCCchhhhcCCCCcEEeecCCCcccc-chhhhcCCCccEEecccccCCCCCccccCCC
Q 036017 189 ---------------------LESFPGILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKELRMEYCYKLSKLPDNLGSL 246 (283)
Q Consensus 189 ---------------------~~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l 246 (283)
.+..+..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|...+..+..+..+
T Consensus 267 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 346 (455)
T 3v47_A 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL 346 (455)
T ss_dssp TTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTC
T ss_pred cccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCc
Confidence 333344566677778888888777754 4456777888888888876655556667778
Q ss_pred cccceeecCCcccccc-cHHhhccCCCCceeeccCC
Q 036017 247 RSLKRLHTGKSAISQL-PSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 247 ~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~c~ 281 (283)
++|+.|++++|.++.+ |..+..+++|++|++++|+
T Consensus 347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 8888888888888755 5667788888888887763
No 25
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.3e-27 Score=197.38 Aligned_cols=224 Identities=24% Similarity=0.353 Sum_probs=183.2
Q ss_pred ccCceEEEecCCCCCccCCCC-CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeee
Q 036017 34 PEELRYLHWHGYPLRTLPTNL-STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLL 111 (283)
Q Consensus 34 ~~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~ 111 (283)
+ +++.|+++++.+..+|..+ .+++|++|++++|.+..++..+.++++|+.|++++|... .++ .+..+++|+.|+++
T Consensus 81 ~-~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 P-GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp T-TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred c-ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 5 8888888888888887766 788888899988888888877888888899998888755 555 57888888888888
Q ss_pred CCCCCCcchhhcc---------CCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEe
Q 036017 112 NCTNLPFISSSIE---------NLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLR 182 (283)
Q Consensus 112 ~~~~~~~~~~~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 182 (283)
+|.....+|..+. .+++|++|++++|.+. .+|..+. .+++|+.|++++|.+. .++..++.+++|++|+
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGG-GCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEE
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhc-CCCCCCEEEccCCCCC-cCchhhccCCCCCEEE
Confidence 8777776666554 4888999999988876 5777776 8889999999988765 4555678888999999
Q ss_pred ecCCCCCCCCchhhhcCCCCcEEeecCCCcc-ccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCccccc
Q 036017 183 LYNCSKLESFPGILENMARLEYIDLRLTAIK-ELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQ 261 (283)
Q Consensus 183 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~ 261 (283)
+++|...+.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|...+.+|+.+..+++|+.+++..+.+..
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 9998888888888888899999999987766 778788888999999999988888889889999999999888776654
Q ss_pred c
Q 036017 262 L 262 (283)
Q Consensus 262 ~ 262 (283)
+
T Consensus 316 l 316 (328)
T 4fcg_A 316 L 316 (328)
T ss_dssp -
T ss_pred H
Confidence 4
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=3.9e-27 Score=194.49 Aligned_cols=219 Identities=23% Similarity=0.262 Sum_probs=197.2
Q ss_pred CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCC-CCCcceEEecCCCCcccchhhhhccC
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNL-STDKLVVLNLPCSNVELLWEEKKEAF 80 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~l~~~~ 80 (283)
+++++|+++++.+. .+|..+..++ +|++|+++++.+..+|..+ .+++|++|++++|.+..++..+.+++
T Consensus 81 ~~l~~L~L~~n~l~---------~lp~~l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~ 150 (328)
T 4fcg_A 81 PGRVALELRSVPLP---------QFPDQAFRLS-HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLN 150 (328)
T ss_dssp TTCCEEEEESSCCS---------SCCSCGGGGT-TCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCT
T ss_pred cceeEEEccCCCch---------hcChhhhhCC-CCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCc
Confidence 57899999999887 5788888899 9999999999999888766 89999999999999999998999999
Q ss_pred CccEEEccCCCCCCCCC-CCC---------CCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcC
Q 036017 81 KLKSVDLCNSQNLTRMP-DLS---------ETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLS 150 (283)
Q Consensus 81 ~L~~L~l~~~~~~~~~~-~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 150 (283)
+|+.|++++|.....++ .+. .+++|+.|++++|... .+|..+..+++|++|++++|.+.+ ++..+. .
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~-~ 227 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIH-H 227 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGG-G
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhc-c
Confidence 99999999988777776 343 4999999999997654 788889999999999999999875 666676 8
Q ss_pred CCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcc-ccchhhhcCCCccEEe
Q 036017 151 LTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIK-ELPSSVEHLEGLKELR 229 (283)
Q Consensus 151 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~~~~~~L~~L~ 229 (283)
+++|+.|++++|...+..+..++.+++|++|++++|...+.+|..+..+++|+.|++++|.+. .+|..++.+++|+.++
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 999999999999988888888999999999999999999999989999999999999998876 8999999999999999
Q ss_pred cccc
Q 036017 230 MEYC 233 (283)
Q Consensus 230 l~~~ 233 (283)
+..+
T Consensus 308 l~~~ 311 (328)
T 4fcg_A 308 VPPH 311 (328)
T ss_dssp CCGG
T ss_pred CCHH
Confidence 9864
No 27
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=1.2e-27 Score=213.46 Aligned_cols=250 Identities=18% Similarity=0.146 Sum_probs=215.5
Q ss_pred ccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCC
Q 036017 25 HLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPN 104 (283)
Q Consensus 25 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 104 (283)
..+. +..++ +|+.|+++++.+..++....+++|+.+++++|.+..++ .+ .+++|+.|++.+|.....+ .+..+++
T Consensus 277 ~~~~-~~~l~-~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~ 351 (606)
T 3vq2_A 277 DIVK-FHCLA-NVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPS 351 (606)
T ss_dssp GGGS-CGGGT-TCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTT
T ss_pred cccc-cccCC-CCCEEEecCccchhhhhccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch-hhccCCC
Confidence 3344 67788 99999999999988884448999999999999998888 45 8999999999999655444 6778999
Q ss_pred CcEEeeeCCCCCCc--chhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccch-hhhcCCCCCCeE
Q 036017 105 LERMYLLNCTNLPF--ISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLS-ASICKLKSLSWL 181 (283)
Q Consensus 105 L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L 181 (283)
|++|++++|..... .+..+..+++|++|++++|.+.+ ++..+. .+++|+.|++++|.+....+ ..+..+++|++|
T Consensus 352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCT-TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred CCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhcc-CCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 99999999865443 36778899999999999998654 555565 88999999999998766655 568889999999
Q ss_pred eecCCCCCCCCchhhhcCCCCcEEeecCCCccc--cchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCccc
Q 036017 182 RLYNCSKLESFPGILENMARLEYIDLRLTAIKE--LPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAI 259 (283)
Q Consensus 182 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i 259 (283)
++++|.+.+..+..+..+++|+.|++++|.+.. +|..++.+++|+.|++++|...+..+..+..+++|+.|++++|.+
T Consensus 430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 509 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509 (606)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence 999999988888889999999999999999984 677889999999999999987777778899999999999999999
Q ss_pred ccc-cHHhhccCCCCceeeccCC
Q 036017 260 SQL-PSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 260 ~~~-~~~~~~~~~L~~L~l~~c~ 281 (283)
+.+ |..+..+++|++|++++|+
T Consensus 510 ~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 510 LFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp SCEEGGGTTTCTTCCEEECTTSC
T ss_pred CCcCHHHccCCCcCCEEECCCCc
Confidence 965 7888999999999999885
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.1e-26 Score=200.80 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=41.9
Q ss_pred CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccC
Q 036017 1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAF 80 (283)
Q Consensus 1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~ 80 (283)
+++|++|++++|.+.+ ++. +..++ +|++|+++++.+..++....+++|++|++++|.+..++. +..++
T Consensus 67 l~~L~~L~Ls~n~l~~---------~~~-~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~ 134 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTD---------ITP-LKNLT-KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLT 134 (466)
T ss_dssp CTTCCEEECCSSCCCC---------CGG-GTTCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred hcCCCEEECCCCccCC---------chh-hhccc-cCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCC
Confidence 4567777777776664 222 45555 666666666655544443355555555555555554432 44444
Q ss_pred CccEEEccCC
Q 036017 81 KLKSVDLCNS 90 (283)
Q Consensus 81 ~L~~L~l~~~ 90 (283)
+|+.|++++|
T Consensus 135 ~L~~L~l~~n 144 (466)
T 1o6v_A 135 NLNRLELSSN 144 (466)
T ss_dssp TCSEEEEEEE
T ss_pred CCCEEECCCC
Confidence 4444444443
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=3.5e-26 Score=189.17 Aligned_cols=260 Identities=16% Similarity=0.206 Sum_probs=205.4
Q ss_pred CceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccc-hhhhhcc
Q 036017 3 NLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELL-WEEKKEA 79 (283)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~-~~~l~~~ 79 (283)
++++++++++.+. .+|..+. + .+++|+++++.+..++. .+ .+++|++|++++|.+..+ +..+..+
T Consensus 32 ~l~~l~~~~~~l~---------~lp~~~~--~-~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (330)
T 1xku_A 32 HLRVVQCSDLGLE---------KVPKDLP--P-DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL 99 (330)
T ss_dssp ETTEEECTTSCCC---------SCCCSCC--T-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred CCeEEEecCCCcc---------ccCccCC--C-CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCC
Confidence 5677777766655 4454332 4 89999999999988776 33 899999999999999876 6778889
Q ss_pred CCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcC--CChhHhhcCCCccCEE
Q 036017 80 FKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILG--PFPAFISLSLTNLEVL 157 (283)
Q Consensus 80 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L 157 (283)
++|+.|++++|... .++. .-.++|++|++++|......+..+..+++|++|++++|.+.. ..+..+. .+++|+.|
T Consensus 100 ~~L~~L~Ls~n~l~-~l~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L 176 (330)
T 1xku_A 100 VKLERLYLSKNQLK-ELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYI 176 (330)
T ss_dssp TTCCEEECCSSCCS-BCCS-SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG-GCTTCCEE
T ss_pred CCCCEEECCCCcCC-ccCh-hhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhcc-CCCCcCEE
Confidence 99999999998744 4442 123799999999987666666678899999999999988743 3444555 88999999
Q ss_pred eccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccch-hhhcCCCccEEecccccCC
Q 036017 158 DLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPS-SVEHLEGLKELRMEYCYKL 236 (283)
Q Consensus 158 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~ 236 (283)
++++|.+.. ++..+ .++|++|++++|.+.+..+..+..+++|+.|++++|.++.++. .+..+++|+.|++++|..
T Consensus 177 ~l~~n~l~~-l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l- 252 (330)
T 1xku_A 177 RIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL- 252 (330)
T ss_dssp ECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC-
T ss_pred ECCCCcccc-CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC-
Confidence 999987543 44333 3789999999988877667788899999999999999996654 578899999999999754
Q ss_pred CCCccccCCCcccceeecCCcccccccHHh-h------ccCCCCceeeccCC
Q 036017 237 SKLPDNLGSLRSLKRLHTGKSAISQLPSSI-A------DLKQVDGLSFYGCR 281 (283)
Q Consensus 237 ~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~-~------~~~~L~~L~l~~c~ 281 (283)
..+|..+..+++|+.|++++|.++.++... . ..+.++.+++.+++
T Consensus 253 ~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 253 VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp SSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred ccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence 578888899999999999999999776422 2 34788899998876
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=5e-27 Score=207.11 Aligned_cols=150 Identities=16% Similarity=0.150 Sum_probs=113.7
Q ss_pred CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccchh-hhhc
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELLWE-EKKE 78 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~~-~l~~ 78 (283)
++|++|++++|.+++ ..+..+..++ +|++|++++|.+..+++ .+ .+++|++|++++|.+..++. .+.+
T Consensus 26 ~~L~~L~Ls~n~l~~--------~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 26 AAMKSLDLSFNKITY--------IGHGDLRACA-NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp TTCCEEECCSSCCCE--------ECSSTTSSCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred CCccEEECcCCccCc--------cChhhhhcCC-cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhcc
Confidence 478999999998875 4467788899 99999999999877664 34 88999999999999987765 4888
Q ss_pred cCCccEEEccCCCCCCC-C-CCCCCCCCCcEEeeeCCCCCCcch-hhccCCCCCcEEEecCCCCcCCChhHhhcCCCccC
Q 036017 79 AFKLKSVDLCNSQNLTR-M-PDLSETPNLERMYLLNCTNLPFIS-SSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLE 155 (283)
Q Consensus 79 ~~~L~~L~l~~~~~~~~-~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 155 (283)
+++|+.|++++|..... . +.++.+++|++|++++|.....++ ..+..+++|++|++++|.+.+..+..+. .+++|+
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~ 175 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK-SIRDIH 175 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEE
T ss_pred CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh-ccccCc
Confidence 99999999999875542 3 357889999999999887555554 4677888888888888877654554443 444444
Q ss_pred EEeccC
Q 036017 156 VLDLAH 161 (283)
Q Consensus 156 ~L~l~~ 161 (283)
.|+++.
T Consensus 176 ~L~l~~ 181 (549)
T 2z81_A 176 HLTLHL 181 (549)
T ss_dssp EEEEEC
T ss_pred eEeccc
Confidence 444443
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=3.4e-26 Score=197.83 Aligned_cols=254 Identities=22% Similarity=0.293 Sum_probs=142.8
Q ss_pred CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCC
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFK 81 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~ 81 (283)
++++.|++.++.+. .++. +..++ +|++|++++|.+..++....+++|++|++++|.+..++. +.++++
T Consensus 46 ~~l~~L~l~~~~i~---------~l~~-~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~ 113 (466)
T 1o6v_A 46 DQVTTLQADRLGIK---------SIDG-VEYLN-NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTN 113 (466)
T ss_dssp HTCCEEECCSSCCC---------CCTT-GGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred ccccEEecCCCCCc---------cCcc-hhhhc-CCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCC
Confidence 46788888877665 3443 56677 888888888888777664478888888888888887765 778888
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcch--------------------hhccCCCCCcEEEecCCCCcC
Q 036017 82 LKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFIS--------------------SSIENLNNLSMLRLEGCKILG 141 (283)
Q Consensus 82 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------------~~~~~~~~L~~L~l~~~~~~~ 141 (283)
|+.|++++|. ...++.+..+++|++|++++|.... .+ ..+..+++|++|++++|.+.+
T Consensus 114 L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 114 LTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp CCEEECCSSC-CCCCGGGTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred CCEEECCCCC-CCCChHHcCCCCCCEEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC
Confidence 8888888876 3444557777888888777654322 11 113445555555555555432
Q ss_pred CChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcc--------
Q 036017 142 PFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIK-------- 213 (283)
Q Consensus 142 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~-------- 213 (283)
++. +. .+++|+.|++++|.+....+ ++.+++|++|++++|.+.. + ..+..+++|+.|++++|.+.
T Consensus 192 -~~~-l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l 264 (466)
T 1o6v_A 192 -ISV-LA-KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAPLSGL 264 (466)
T ss_dssp -CGG-GG-GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTC
T ss_pred -Chh-hc-cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchhhhcC
Confidence 222 22 45555555555554333222 3334444555444443332 1 22334444444444444444
Q ss_pred --------------ccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccHHhhccCCCCceeecc
Q 036017 214 --------------ELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYG 279 (283)
Q Consensus 214 --------------~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~ 279 (283)
.++. +..+++|+.|++++|...+ ++. +..+++|+.|++++|.+++++. +..+++|++|++++
T Consensus 265 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 265 TKLTELKLGANQISNISP-LAGLTALTNLELNENQLED-ISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYN 340 (466)
T ss_dssp TTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSC-CGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCS
T ss_pred CCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccC-chh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCC
Confidence 3332 3444444444444443222 211 3444555555555555554433 44555555555555
Q ss_pred C
Q 036017 280 C 280 (283)
Q Consensus 280 c 280 (283)
|
T Consensus 341 n 341 (466)
T 1o6v_A 341 N 341 (466)
T ss_dssp S
T ss_pred C
Confidence 4
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=6.2e-27 Score=205.23 Aligned_cols=154 Identities=14% Similarity=0.143 Sum_probs=95.5
Q ss_pred cCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcc--cchhhhcCCCCCCeEeecCCCCCCCCch-hhhcCC
Q 036017 124 ENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLN--RLSASICKLKSLSWLRLYNCSKLESFPG-ILENMA 200 (283)
Q Consensus 124 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~ 200 (283)
..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+.. ..+..++.+++|++|++++|.+.+.++. .+..++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 3555666666666665554454444 56666666666665543 3344556666666666666666554443 245556
Q ss_pred CCcEEeecCCCcc-ccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccHH-hhccCCCCceeec
Q 036017 201 RLEYIDLRLTAIK-ELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSS-IADLKQVDGLSFY 278 (283)
Q Consensus 201 ~L~~l~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~-~~~~~~L~~L~l~ 278 (283)
+|+.+++++|.++ .++..+. ++|+.|++++|.. +.+|..+..+++|+.|++++|.++.+|.. +..+++|++|+++
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l-~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcc-cccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECc
Confidence 6666666666664 3332221 5677777777643 35666666777788888888877777765 6677778888877
Q ss_pred cCC
Q 036017 279 GCR 281 (283)
Q Consensus 279 ~c~ 281 (283)
+|+
T Consensus 477 ~N~ 479 (520)
T 2z7x_B 477 TNP 479 (520)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 33
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=2.5e-27 Score=209.07 Aligned_cols=127 Identities=16% Similarity=0.194 Sum_probs=93.7
Q ss_pred CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCC-C-CCCcceEEecCCCCccc--chhhh
Q 036017 1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTN-L-STDKLVVLNLPCSNVEL--LWEEK 76 (283)
Q Consensus 1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~-~~~~L~~l~l~~~~~~~--~~~~l 76 (283)
+++|++|++++|.+.+ ..+..+..++ +|++|++++|.+..++.. + ++++|++|++++|.+.. .+..+
T Consensus 49 l~~L~~L~Ls~n~i~~--------~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 119 (549)
T 2z81_A 49 CANLQVLILKSSRINT--------IEGDAFYSLG-SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119 (549)
T ss_dssp CTTCCEEECTTSCCCE--------ECTTTTTTCT-TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSC
T ss_pred CCcccEEECCCCCcCc--------cChhhccccc-cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhh
Confidence 5789999999998875 4557788888 999999999998777654 3 88999999999998874 34567
Q ss_pred hccCCccEEEccCCCCCCCCC--CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecC
Q 036017 77 KEAFKLKSVDLCNSQNLTRMP--DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEG 136 (283)
Q Consensus 77 ~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 136 (283)
.++++|+.|++++|.....++ .+..+++|++|++++|......+..+..+++|++|+++.
T Consensus 120 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence 788899999998887555544 577888888888887766554444444444444444333
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=2.1e-26 Score=204.91 Aligned_cols=244 Identities=16% Similarity=0.136 Sum_probs=193.9
Q ss_pred cccCceEEEecCCCCCccCCCC--CCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEE
Q 036017 33 LPEELRYLHWHGYPLRTLPTNL--STDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERM 108 (283)
Q Consensus 33 ~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L 108 (283)
++ +++.++++++.+..+|... .+++|+.|++++|.+..++. .+..+++|+.|++++|.+....+ .++.+++|++|
T Consensus 50 l~-~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LN-NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GC-CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CC-CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 56 8999999999999988764 79999999999999997764 78889999999999998655444 47899999999
Q ss_pred eeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcC--------------
Q 036017 109 YLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICK-------------- 174 (283)
Q Consensus 109 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-------------- 174 (283)
++++|......+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+.......+..
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ-ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT-TCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhh-cCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccc
Confidence 9999875533334468999999999999998775555666 8999999999998765432211111
Q ss_pred --C---------------------CCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcccc-chhhhcCCCccEEec
Q 036017 175 --L---------------------KSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKELRM 230 (283)
Q Consensus 175 --~---------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L~l 230 (283)
. ++|+.|++++|.+.+ +..+..+++|+.|++++|.+..+ |..++.+++|+.|++
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 285 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEEC
Confidence 1 234445555544443 25677889999999999999844 667889999999999
Q ss_pred ccccCCCCCccccCCCcccceeecCCcccccccHHhhccCCCCceeeccCC
Q 036017 231 EYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 231 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c~ 281 (283)
++|.. ..++..+..+++|+.|++++|.++.+|..+..+++|++|++++|+
T Consensus 286 s~N~l-~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 286 SNNRL-VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp TTSCC-CEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred CCCCC-CCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC
Confidence 99764 446667778899999999999999999888999999999999885
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=1.6e-26 Score=213.17 Aligned_cols=270 Identities=17% Similarity=0.201 Sum_probs=204.3
Q ss_pred CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCC-Ccc-CCCC-CCCcceEEecCCCCcccc-hhhhh
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPL-RTL-PTNL-STDKLVVLNLPCSNVELL-WEEKK 77 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~-~~~~-~~~~L~~l~l~~~~~~~~-~~~l~ 77 (283)
++|++|++++|.+++ ..+..+..++ +|++|++++|.. ..+ +..+ ++++|+.|++++|.+..+ +..+.
T Consensus 24 ~~l~~LdLs~N~i~~--------i~~~~~~~l~-~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 24 NTTERLLLSFNYIRT--------VTASSFPFLE-QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp TTCCEEEEESCCCCE--------ECSSSCSSCC-SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCcCEEECCCCcCCc--------cChhHCcccc-cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 578999999998875 5577888899 999999999854 555 3344 889999999999998865 67788
Q ss_pred ccCCccEEEccCCCCCCCCC-C--CCCCCCCcEEeeeCCCCCCcc-hhhccCCCCCcEEEecCCCCcCCChhHhhcCC--
Q 036017 78 EAFKLKSVDLCNSQNLTRMP-D--LSETPNLERMYLLNCTNLPFI-SSSIENLNNLSMLRLEGCKILGPFPAFISLSL-- 151 (283)
Q Consensus 78 ~~~~L~~L~l~~~~~~~~~~-~--~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-- 151 (283)
++++|+.|++++|.....++ . ++.+++|++|++++|...... +..+..+++|++|++++|.+.+..+..+. .+
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~-~l~~ 173 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE-PLQG 173 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH-HHHH
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc-cccC
Confidence 89999999999988665443 2 788999999999988765543 35678899999999998877554443322 11
Q ss_pred Cc------------------------------cCEEeccCCcCcccchhhh-----------------------------
Q 036017 152 TN------------------------------LEVLDLAHCKRLNRLSASI----------------------------- 172 (283)
Q Consensus 152 ~~------------------------------L~~L~l~~~~~~~~~~~~l----------------------------- 172 (283)
++ |+.|++++|.+....+..+
T Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence 22 6777777664332221111
Q ss_pred -------cC--CCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcccc-chhhhcCCCccEEecccccCCCCCccc
Q 036017 173 -------CK--LKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKELRMEYCYKLSKLPDN 242 (283)
Q Consensus 173 -------~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~ 242 (283)
.+ .++|+.|++++|.+....+..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|...+..+..
T Consensus 254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 333 (844)
T 3j0a_A 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333 (844)
T ss_dssp TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS
T ss_pred CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH
Confidence 11 25688888888777665666778888999999999998855 456788999999999998776666778
Q ss_pred cCCCcccceeecCCcccccccH-HhhccCCCCceeeccCC
Q 036017 243 LGSLRSLKRLHTGKSAISQLPS-SIADLKQVDGLSFYGCR 281 (283)
Q Consensus 243 ~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~c~ 281 (283)
+..+++|+.|++++|.++.++. .+..+++|++|++++|.
T Consensus 334 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 8899999999999999986654 57789999999998874
No 36
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=1.8e-26 Score=212.80 Aligned_cols=268 Identities=16% Similarity=0.161 Sum_probs=208.5
Q ss_pred CCCceeEEeeccccCCCCCCCccccc-CCcCCCcccCceEEEecCCCCCcc-CCCC-CCCcceEEecCCCCccc-chhh-
Q 036017 1 MTNLRLLKFYLHNLRGDPIMSSKVHL-DQGLDYLPEELRYLHWHGYPLRTL-PTNL-STDKLVVLNLPCSNVEL-LWEE- 75 (283)
Q Consensus 1 ~~~L~~l~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~-~~~~L~~l~l~~~~~~~-~~~~- 75 (283)
+++|++|++++|.+.+ .+ |..+..++ +|++|++++|.+..+ |..+ ++++|++|++++|.+.. ++..
T Consensus 47 l~~L~~LdLs~n~~~~--------~i~~~~f~~L~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 117 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPL--------TIDKEAFRNLP-NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG 117 (844)
T ss_dssp CCSCSEEEECTTCCCC--------EECTTTTSSCT-TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTC
T ss_pred cccCeEEeCCCCCCcc--------ccCHHHhcCCC-CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCc
Confidence 5789999999886554 44 67788899 999999999998766 4455 89999999999998875 4443
Q ss_pred -hhccCCccEEEccCCCCCCCCC--CCCCCCCCcEEeeeCCCCCCcchhhcc--------------------------CC
Q 036017 76 -KKEAFKLKSVDLCNSQNLTRMP--DLSETPNLERMYLLNCTNLPFISSSIE--------------------------NL 126 (283)
Q Consensus 76 -l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~--------------------------~~ 126 (283)
+.++++|+.|++++|......+ .++.+++|++|++++|......+..+. .+
T Consensus 118 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~ 197 (844)
T 3j0a_A 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197 (844)
T ss_dssp CCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSS
T ss_pred cccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhc
Confidence 7789999999999988655433 478899999999988765443222221 22
Q ss_pred C------CCcEEEecCCCCcCCChhHhhc-------------------------------------CCCccCEEeccCCc
Q 036017 127 N------NLSMLRLEGCKILGPFPAFISL-------------------------------------SLTNLEVLDLAHCK 163 (283)
Q Consensus 127 ~------~L~~L~l~~~~~~~~~~~~~~~-------------------------------------~~~~L~~L~l~~~~ 163 (283)
+ .|+.|++++|.+....+..+.. ..++|+.|++++|.
T Consensus 198 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~ 277 (844)
T 3j0a_A 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF 277 (844)
T ss_dssp SCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC
T ss_pred CCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc
Confidence 2 2778888777544333322210 13679999999988
Q ss_pred CcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcccc-chhhhcCCCccEEecccccCCCCCccc
Q 036017 164 RLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKELRMEYCYKLSKLPDN 242 (283)
Q Consensus 164 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~ 242 (283)
+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.+ +..+..+++|+.|++++|......+..
T Consensus 278 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 357 (844)
T 3j0a_A 278 VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357 (844)
T ss_dssp CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSC
T ss_pred ccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhh
Confidence 7777777788999999999999988877777889999999999999999855 566889999999999998765555566
Q ss_pred cCCCcccceeecCCcccccccHHhhccCCCCceeeccCC
Q 036017 243 LGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 243 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c~ 281 (283)
+..+++|+.|++++|.++.++. +++|++|++++|+
T Consensus 358 ~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 358 FKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNK 392 (844)
T ss_dssp SCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCC
T ss_pred hcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCC
Confidence 8889999999999999997654 7788888888764
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=5.6e-26 Score=205.26 Aligned_cols=223 Identities=19% Similarity=0.190 Sum_probs=139.3
Q ss_pred cceEEecCCCCcccc-hhhhhccCCccEEEccCCCCCCCCC--CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEe
Q 036017 58 KLVVLNLPCSNVELL-WEEKKEAFKLKSVDLCNSQNLTRMP--DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRL 134 (283)
Q Consensus 58 ~L~~l~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 134 (283)
.|+.+++++|.+..+ +..+..+++|+.|++++|.....++ .+..+++|++|++++|......+..+..+++|+.|++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 344444444444432 2334455566666666655433333 3455666666666665544334445556666666666
Q ss_pred cCCCCc--CCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCC----C----chhhhcCCCCcE
Q 036017 135 EGCKIL--GPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLES----F----PGILENMARLEY 204 (283)
Q Consensus 135 ~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~----~~~~~~~~~L~~ 204 (283)
++|.+. +..|..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+... + ...+..+++|+.
T Consensus 462 ~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~ 540 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540 (680)
T ss_dssp TTSCCBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred ccccccccccCCcccc-cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence 666543 23444454 677778888877776655555567777888888877766532 1 123567778888
Q ss_pred EeecCCCccccchh-hhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccHH-hh-ccCCCCceeeccCC
Q 036017 205 IDLRLTAIKELPSS-VEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSS-IA-DLKQVDGLSFYGCR 281 (283)
Q Consensus 205 l~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~-~~-~~~~L~~L~l~~c~ 281 (283)
+++++|.++.+|.. +..+++|+.|++++|......+..+..+++|+.|++++|.++.++.. +. .+++|+++++++|+
T Consensus 541 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred EECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCC
Confidence 88888888777654 67788888888887665543344467778888888888888866543 34 67888888888765
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=4.9e-26 Score=205.64 Aligned_cols=271 Identities=19% Similarity=0.170 Sum_probs=161.4
Q ss_pred CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCC-C-CCCcceEEecCCCCcccchh-hhhc
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTN-L-STDKLVVLNLPCSNVELLWE-EKKE 78 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~-~~~~L~~l~l~~~~~~~~~~-~l~~ 78 (283)
+++++|++++|.+.+ ..+..+..++ +|++|+++++.+..+++. + ++++|++|++++|.+..++. .+.+
T Consensus 25 ~~l~~L~Ls~n~l~~--------~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 25 TNITVLNLTHNQLRR--------LPAANFTRYS-QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp TTCSEEECCSSCCCC--------CCGGGGGGGT-TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEECCCCCCCC--------cCHHHHhCCC-cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence 367778887777764 3334566677 777777777776555433 2 67777777777777776664 3666
Q ss_pred cCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhh-cCCCccCE
Q 036017 79 AFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFIS-LSLTNLEV 156 (283)
Q Consensus 79 ~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~ 156 (283)
+++|+.|++++|......+ .++.+++|++|++++|......+..+..+++|++|++++|.+.+..+..+. ..+++|+.
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence 7777777777776433332 466777777777777665554455566677777777777665543333321 13456666
Q ss_pred EeccCCcCcccchh---------------------------------------------------hhcCCC--CCCeEee
Q 036017 157 LDLAHCKRLNRLSA---------------------------------------------------SICKLK--SLSWLRL 183 (283)
Q Consensus 157 L~l~~~~~~~~~~~---------------------------------------------------~l~~~~--~L~~L~l 183 (283)
|++++|.+.+..+. .+..++ +|++|++
T Consensus 176 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L 255 (680)
T 1ziw_A 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255 (680)
T ss_dssp EECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred EECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence 66666654333222 222222 2555555
Q ss_pred cCCCCCCCCchhhhcCCCCcEEeecCCCccc-cchhhhcCCCccEEecccccCCC-----CCcc----ccCCCcccceee
Q 036017 184 YNCSKLESFPGILENMARLEYIDLRLTAIKE-LPSSVEHLEGLKELRMEYCYKLS-----KLPD----NLGSLRSLKRLH 253 (283)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~~~~-----~l~~----~~~~l~~L~~L~ 253 (283)
++|.+.+..+..+..+++|+++++++|.+.. .+..+..+++|+.|++++|.... .+|. .+..+++|+.|+
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~ 335 (680)
T 1ziw_A 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEE
T ss_pred CCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEE
Confidence 5544444333445555555555555555552 23344555556666655433221 2222 456677888888
Q ss_pred cCCccccccc-HHhhccCCCCceeeccCC
Q 036017 254 TGKSAISQLP-SSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 254 l~~~~i~~~~-~~~~~~~~L~~L~l~~c~ 281 (283)
+++|.++.++ ..+..+++|++|++++|.
T Consensus 336 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp CCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred CCCCccCCCChhHhccccCCcEEECCCCc
Confidence 8888887554 457788889999888764
No 39
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=205.63 Aligned_cols=250 Identities=17% Similarity=0.187 Sum_probs=212.5
Q ss_pred ccCCcCCCcccCceEEEecCCCCCccCCCC-CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCC
Q 036017 25 HLDQGLDYLPEELRYLHWHGYPLRTLPTNL-STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETP 103 (283)
Q Consensus 25 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 103 (283)
..+..+..++ +|+.|+++++.+..++..+ .+ +|+.+++++|.+..++. ..+++|+.|++.++.....++. ..++
T Consensus 273 ~~~~~~~~l~-~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~ 347 (570)
T 2z63_A 273 DIIDLFNCLT-NVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLP 347 (570)
T ss_dssp CSTTTTGGGT-TCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC-CBCT
T ss_pred hchhhhcCcC-cccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc-ccCC
Confidence 4567778888 9999999999998888777 66 99999999999997765 4789999999999886554444 7899
Q ss_pred CCcEEeeeCCCCCCc--chhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccch-hhhcCCCCCCe
Q 036017 104 NLERMYLLNCTNLPF--ISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLS-ASICKLKSLSW 180 (283)
Q Consensus 104 ~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~ 180 (283)
+|++|++++|..... .+..+..+++|++|++++|.+.+ ++..+. .+++|+.|++++|.+....+ ..+..+++|++
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-cccccc-ccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 999999999875543 26778899999999999998765 444455 89999999999987665544 35788999999
Q ss_pred EeecCCCCCCCCchhhhcCCCCcEEeecCCCcc--ccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcc
Q 036017 181 LRLYNCSKLESFPGILENMARLEYIDLRLTAIK--ELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSA 258 (283)
Q Consensus 181 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 258 (283)
|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|...+..|..+..+++|+.|++++|.
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence 999999988878888899999999999999987 588888999999999999998777668889999999999999999
Q ss_pred ccccc-HHhhccCCCCceeeccCC
Q 036017 259 ISQLP-SSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 259 i~~~~-~~~~~~~~L~~L~l~~c~ 281 (283)
++.++ ..+..+++|++|++++|+
T Consensus 506 l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 506 LKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCHHHhhcccCCcEEEecCCc
Confidence 99765 467899999999999875
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=7.7e-26 Score=187.27 Aligned_cols=240 Identities=18% Similarity=0.239 Sum_probs=162.5
Q ss_pred CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccch-hhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCC
Q 036017 36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLW-EEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNC 113 (283)
Q Consensus 36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~ 113 (283)
+++.++++++.+..+|... .++|+.|++++|.+..++ ..+.++++|+.|++++|......+ .+..+++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 7999999999998888765 479999999999999774 468899999999999998655444 5889999999999987
Q ss_pred CCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcc--cchhhhcCC----------------
Q 036017 114 TNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLN--RLSASICKL---------------- 175 (283)
Q Consensus 114 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~---------------- 175 (283)
... .+|..+. ++|++|++++|.+.+..+..+. .+++|+.|++++|.+.. ..+..+..+
T Consensus 113 ~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 113 HLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFS-GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIP 188 (332)
T ss_dssp CCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGS-SCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCC
T ss_pred cCC-ccCcccc--ccCCEEECCCCccCccCHhHhC-CCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccC
Confidence 644 5554433 7899999999887653333344 88899999999887632 333334433
Q ss_pred ----CCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccch-hhhcCCCccEEecccccCCCCCccccCCCcccc
Q 036017 176 ----KSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPS-SVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLK 250 (283)
Q Consensus 176 ----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~ 250 (283)
++|++|++++|.+.+..+..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.. +.+|..+..+++|+
T Consensus 189 ~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~ 267 (332)
T 2ft3_A 189 KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQ 267 (332)
T ss_dssp SSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC-CBCCTTGGGCTTCC
T ss_pred ccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC-eecChhhhcCccCC
Confidence 345555555554444444455566666666666666664443 456666666666666543 35555566666666
Q ss_pred eeecCCcccccccH-Hhhc------cCCCCceeeccCC
Q 036017 251 RLHTGKSAISQLPS-SIAD------LKQVDGLSFYGCR 281 (283)
Q Consensus 251 ~L~l~~~~i~~~~~-~~~~------~~~L~~L~l~~c~ 281 (283)
.|++++|.++.++. .+.. .+.|+.|++.+|+
T Consensus 268 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 268 VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp EEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred EEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence 66666666664442 1211 3456666666554
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=3e-26 Score=202.70 Aligned_cols=266 Identities=15% Similarity=0.141 Sum_probs=170.2
Q ss_pred CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccchhhhhcc
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELLWEEKKEA 79 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~~~l~~~ 79 (283)
++|++|++++|.+.+ ..+..+..++ +|++|++++|.+..+++ .+ ++++|++|++++|.+..++.. .+
T Consensus 52 ~~L~~L~Ls~N~i~~--------~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l 120 (562)
T 3a79_B 52 PRTKALSLSQNSISE--------LRMPDISFLS-ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PM 120 (562)
T ss_dssp TTCCEEECCSSCCCC--------CCGGGTTTCT-TCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CC
T ss_pred CCcCEEECCCCCccc--------cChhhhccCC-CccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--cc
Confidence 456777777777664 3345667777 77777777777766533 33 677777777777777766654 67
Q ss_pred CCccEEEccCCCCCCC-CC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCC--cEEEecCCCC--cCCChhHhhc----
Q 036017 80 FKLKSVDLCNSQNLTR-MP-DLSETPNLERMYLLNCTNLPFISSSIENLNNL--SMLRLEGCKI--LGPFPAFISL---- 149 (283)
Q Consensus 80 ~~L~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~~~---- 149 (283)
++|+.|++++|..... ++ .++.+++|++|++++|..... .+..+++| ++|++++|.+ .+..+..+..
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~ 197 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEE
T ss_pred ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcc
Confidence 7777777777764432 22 466777777777776654332 22233333 5555555544 2111111100
Q ss_pred ----------------------------------------------------------------------------CCCc
Q 036017 150 ----------------------------------------------------------------------------SLTN 153 (283)
Q Consensus 150 ----------------------------------------------------------------------------~~~~ 153 (283)
..++
T Consensus 198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 277 (562)
T 3a79_B 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP 277 (562)
T ss_dssp EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSS
T ss_pred eEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccc
Confidence 1124
Q ss_pred cCEEeccCCcCcccchhhh-----------------------------------------------------cCCCCCCe
Q 036017 154 LEVLDLAHCKRLNRLSASI-----------------------------------------------------CKLKSLSW 180 (283)
Q Consensus 154 L~~L~l~~~~~~~~~~~~l-----------------------------------------------------~~~~~L~~ 180 (283)
|+.|++++|.+.+.+|..+ ..+++|++
T Consensus 278 L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~ 357 (562)
T 3a79_B 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF 357 (562)
T ss_dssp EEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCE
T ss_pred ccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceE
Confidence 5555555544332222211 56788999
Q ss_pred EeecCCCCCCCCchhhhcCCCCcEEeecCCCccccc---hhhhcCCCccEEecccccCCCCCccc-cCCC----------
Q 036017 181 LRLYNCSKLESFPGILENMARLEYIDLRLTAIKELP---SSVEHLEGLKELRMEYCYKLSKLPDN-LGSL---------- 246 (283)
Q Consensus 181 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~---~~~~~~~~L~~L~l~~~~~~~~l~~~-~~~l---------- 246 (283)
|++++|.+.+..+..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|...+.+|.. +..+
T Consensus 358 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~ 437 (562)
T 3a79_B 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437 (562)
T ss_dssp EECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS
T ss_pred EECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCC
Confidence 999998888877888889999999999999998554 45788999999999998766534432 3332
Q ss_pred ------------cccceeecCCcccccccHHhhccCCCCceeeccCC
Q 036017 247 ------------RSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 247 ------------~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c~ 281 (283)
++|+.|++++|.++.+|..+..+++|++|++++|+
T Consensus 438 n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 438 NMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp SCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC
T ss_pred CCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC
Confidence 46666777777777777666677788888877763
No 42
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.4e-26 Score=189.52 Aligned_cols=225 Identities=19% Similarity=0.245 Sum_probs=187.3
Q ss_pred cCceEEEecCCCCCccCCCC--CCCcceEEecCCCCcccc---hhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEe
Q 036017 35 EELRYLHWHGYPLRTLPTNL--STDKLVVLNLPCSNVELL---WEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMY 109 (283)
Q Consensus 35 ~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 109 (283)
+++++|+++++.+..++... ++++|+.|++++|.+..+ +..+..+++|+.|++++|........+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 38999999999998888753 899999999999988754 4566778999999999997543223578899999999
Q ss_pred eeCCCCCCcch-hhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcc-cchhhhcCCCCCCeEeecCCC
Q 036017 110 LLNCTNLPFIS-SSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLN-RLSASICKLKSLSWLRLYNCS 187 (283)
Q Consensus 110 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~ 187 (283)
+++|......+ ..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+.. ..+..+..+++|++|++++|.
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 99876544332 4678899999999999987765566565 88999999999987665 467778889999999999998
Q ss_pred CCCCCchhhhcCCCCcEEeecCCCccccch-hhhcCCCccEEecccccCCCCCccccCCCc-ccceeecCCcccc
Q 036017 188 KLESFPGILENMARLEYIDLRLTAIKELPS-SVEHLEGLKELRMEYCYKLSKLPDNLGSLR-SLKRLHTGKSAIS 260 (283)
Q Consensus 188 ~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~-~L~~L~l~~~~i~ 260 (283)
+.+..+..+..+++|+.|++++|.++.++. .+..+++|+.|++++|...+..+..+..++ +|+.|++++|.++
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 887667788899999999999999996654 578899999999999987777777888885 8999999999887
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=2.3e-25 Score=191.73 Aligned_cols=207 Identities=18% Similarity=0.153 Sum_probs=145.0
Q ss_pred CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccC
Q 036017 1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAF 80 (283)
Q Consensus 1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~ 80 (283)
+++|++|+++++.+.+ +| .+..++ +|++|+++++.+..++ ...+++|++|++++|.+..++ +.+++
T Consensus 41 l~~L~~L~Ls~n~l~~---------~~-~l~~l~-~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~ 106 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD---------MT-GIEKLT-GLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLT 106 (457)
T ss_dssp HTTCCEEECCSSCCCC---------CT-TGGGCT-TCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCT
T ss_pred cCCCCEEEccCCCccc---------Ch-hhcccC-CCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCC
Confidence 3678899998888774 34 466778 8888888888887775 447888888888888888764 67788
Q ss_pred CccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEecc
Q 036017 81 KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLA 160 (283)
Q Consensus 81 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 160 (283)
+|+.|++++|.... ++ ++.+++|++|++++|.... + .+..+++|++|++++|...+.++ +. .+++|+.|+++
T Consensus 107 ~L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~~--~~-~l~~L~~L~ls 178 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKLD--VT-PQTQLTTLDCS 178 (457)
T ss_dssp TCCEEECCSSCCSC-CC-CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCCC--CT-TCTTCCEEECC
T ss_pred cCCEEECCCCcCCe-ec-CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCcccccc--cc-cCCcCCEEECC
Confidence 88888888886443 43 7778888888888766543 2 25677777888887775444442 33 66777777777
Q ss_pred CCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCC
Q 036017 161 HCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLS 237 (283)
Q Consensus 161 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~ 237 (283)
+|.+.. ++ ++.+++|+.|++++|.+.+. .+..+++|+.|++++|.++.+| ++.+++|+.|++++|...+
T Consensus 179 ~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 179 FNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp SSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC
T ss_pred CCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCC
Confidence 766544 22 56667777777777666543 2556677777777777777665 5666777777777765443
No 44
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.7e-25 Score=198.21 Aligned_cols=263 Identities=17% Similarity=0.121 Sum_probs=172.7
Q ss_pred CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCC-C-CCCcceEEecCCCCcccch-hhhhc
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTN-L-STDKLVVLNLPCSNVELLW-EEKKE 78 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~-~~~~L~~l~l~~~~~~~~~-~~l~~ 78 (283)
+++++|++++|.+++ ..+..+..++ +|++|++++|.+..++.. + ++++|++|++++|.+..++ ..+.+
T Consensus 28 ~~l~~L~Ls~n~l~~--------~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (570)
T 2z63_A 28 FSTKNLDLSFNPLRH--------LGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (570)
T ss_dssp SSCCEEECCSCCCCE--------ECTTTTTTCS-SCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccccEEEccCCccCc--------cChhHhhCCC-CceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcC
Confidence 468899999888875 3455788899 999999999998777643 3 8899999999999988765 56788
Q ss_pred cCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCC-cchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCcc--
Q 036017 79 AFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLP-FISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNL-- 154 (283)
Q Consensus 79 ~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L-- 154 (283)
+++|+.|++.+|......+ .++.+++|++|++++|.... .+|..+..+++|++|++++|.+.+..+..+. .+++|
T Consensus 99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~ 177 (570)
T 2z63_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPL 177 (570)
T ss_dssp CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGH-HHHTCTT
T ss_pred ccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHcc-chhccch
Confidence 9999999999987443333 48889999999999887654 4678888999999999999887654444443 44444
Q ss_pred --CEEeccCCcCcccchhh-------------------------------------------------------------
Q 036017 155 --EVLDLAHCKRLNRLSAS------------------------------------------------------------- 171 (283)
Q Consensus 155 --~~L~l~~~~~~~~~~~~------------------------------------------------------------- 171 (283)
+.+++++|.+....+..
T Consensus 178 ~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l 257 (570)
T 2z63_A 178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257 (570)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGS
T ss_pred hhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccccc
Confidence 56666665543322222
Q ss_pred --------------------hcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecc
Q 036017 172 --------------------ICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRME 231 (283)
Q Consensus 172 --------------------l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~ 231 (283)
+..+++|++|++.+|.+. .++..+..+ +|+++++++|.+..+|. ..+++|+.|+++
T Consensus 258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~ 333 (570)
T 2z63_A 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFT 333 (570)
T ss_dssp EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEE
T ss_pred chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCc
Confidence 223344555555544333 244444444 55555555555554443 244455555555
Q ss_pred cccCCCCCccccCCCcccceeecCCcccccc---cHHhhccCCCCceeeccC
Q 036017 232 YCYKLSKLPDNLGSLRSLKRLHTGKSAISQL---PSSIADLKQVDGLSFYGC 280 (283)
Q Consensus 232 ~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~---~~~~~~~~~L~~L~l~~c 280 (283)
+|......+. ..+++|+.|++++|.++.+ +..+..+++|++|++++|
T Consensus 334 ~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n 383 (570)
T 2z63_A 334 SNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383 (570)
T ss_dssp SCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC
T ss_pred CCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCC
Confidence 5443332222 4566677777777666633 455666666666666655
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=5.6e-25 Score=197.00 Aligned_cols=128 Identities=18% Similarity=0.161 Sum_probs=98.9
Q ss_pred CceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCC-C-CCCcceEEecCCCCcccchh-hhhcc
Q 036017 3 NLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTN-L-STDKLVVLNLPCSNVELLWE-EKKEA 79 (283)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~-~~~~L~~l~l~~~~~~~~~~-~l~~~ 79 (283)
++++|++++|.+++ ..+..+..++ +|++|++++|.+..+++. + ++++|++|++++|.+..++. .+.++
T Consensus 53 ~~~~LdLs~N~i~~--------l~~~~f~~l~-~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L 123 (635)
T 4g8a_A 53 STKNLDLSFNPLRH--------LGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 123 (635)
T ss_dssp TCCEEECTTSCCCE--------ECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred CCCEEEeeCCCCCC--------CCHHHHhCCC-CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence 68899999988874 3345788898 999999999998887664 3 78999999999999888764 46788
Q ss_pred CCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCC-cchhhccCCCCCcEEEecCCCC
Q 036017 80 FKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLP-FISSSIENLNNLSMLRLEGCKI 139 (283)
Q Consensus 80 ~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~ 139 (283)
++|+.|++++|......+ .++.+++|++|++++|.... ..|..+..+++|++|++++|.+
T Consensus 124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 999999998887443333 47888888888888876543 3556667778888888777654
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=4.6e-25 Score=189.80 Aligned_cols=250 Identities=20% Similarity=0.196 Sum_probs=152.9
Q ss_pred CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccC
Q 036017 1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAF 80 (283)
Q Consensus 1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~ 80 (283)
+++|++|++++|.+.+ ++ +..++ +|++|++++|.+..++ ...+++|++|++++|.+..++ +..++
T Consensus 63 l~~L~~L~Ls~n~l~~---------~~--~~~l~-~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~--~~~l~ 127 (457)
T 3bz5_A 63 LTGLTKLICTSNNITT---------LD--LSQNT-NLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD--VSQNP 127 (457)
T ss_dssp CTTCSEEECCSSCCSC---------CC--CTTCT-TCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC--CTTCT
T ss_pred cCCCCEEEccCCcCCe---------Ec--cccCC-CCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec--CCCCC
Confidence 4678888888888774 22 56677 8888888888776664 337778888888888777664 66677
Q ss_pred CccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEecc
Q 036017 81 KLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLA 160 (283)
Q Consensus 81 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 160 (283)
+|+.|++++|.... + .++.+++|++|++++|...+.+ .+..+++|++|++++|.+.+ ++ +. .+++|+.|+++
T Consensus 128 ~L~~L~l~~N~l~~-l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~-~l~~L~~L~l~ 199 (457)
T 3bz5_A 128 LLTYLNCARNTLTE-I-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VS-QNKLLNRLNCD 199 (457)
T ss_dssp TCCEEECTTSCCSC-C-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CT-TCTTCCEEECC
T ss_pred cCCEEECCCCccce-e-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cc-cCCCCCEEECc
Confidence 77777777776433 3 3566667777777666444443 34555666666666665543 33 22 45556666655
Q ss_pred CCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchh----------------------
Q 036017 161 HCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSS---------------------- 218 (283)
Q Consensus 161 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~---------------------- 218 (283)
+|.+... .++.+++|++|++++|.+.+ +| +..+++|+.+++++|.++.++..
T Consensus 200 ~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~ 273 (457)
T 3bz5_A 200 TNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTH 273 (457)
T ss_dssp SSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred CCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCC
Confidence 5544332 24445555555555554443 22 44455555555555544432210
Q ss_pred --------hhcCCCccEEecccccCCCCCcc--------ccCCCcccceeecCCcccccccHHhhccCCCCceeeccCC
Q 036017 219 --------VEHLEGLKELRMEYCYKLSKLPD--------NLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 219 --------~~~~~~L~~L~l~~~~~~~~l~~--------~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c~ 281 (283)
++.+++|+.|++++|...+.+|. .+..+++|+.|++++|.++.++ +..+++|+.|++++++
T Consensus 274 n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 274 NTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSC
T ss_pred CccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCC
Confidence 23446666666666655443332 1345567788888888887763 7778888888887664
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=7.9e-26 Score=188.76 Aligned_cols=242 Identities=15% Similarity=0.175 Sum_probs=148.4
Q ss_pred CceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccch-hhhhccCCccEEEccCCCCCCCCC-C-CCCCCCCcEEee
Q 036017 36 ELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELLW-EEKKEAFKLKSVDLCNSQNLTRMP-D-LSETPNLERMYL 110 (283)
Q Consensus 36 ~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~-~~~~~~L~~L~l 110 (283)
+|++|+++++.+..++. .+ ++++|+.|++++|.+..++ ..+.++++|+.|++++|... .++ . ++.+++|++|++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEEC
Confidence 67777777777666554 22 6677777777777666553 34666677777777766633 333 2 566677777777
Q ss_pred eCCCCCCcchh--hccCCCCCcEEEecCCCCcCCC-hhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCC
Q 036017 111 LNCTNLPFISS--SIENLNNLSMLRLEGCKILGPF-PAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCS 187 (283)
Q Consensus 111 ~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 187 (283)
++|... .++. .+..+++|++|++++|...+.+ +..+. .+++|+.|++++|.+....+..++.+++|++|++++|.
T Consensus 132 ~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp TTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred CCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHcc-CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 665433 3333 4566677777777766322223 23343 66677777777766555556666666777777777665
Q ss_pred CCCCCc-hhhhcCCCCcEEeecCCCccccch----hhhcCCCccEEecccccCCC----CCccccCCCcccceeecCCcc
Q 036017 188 KLESFP-GILENMARLEYIDLRLTAIKELPS----SVEHLEGLKELRMEYCYKLS----KLPDNLGSLRSLKRLHTGKSA 258 (283)
Q Consensus 188 ~~~~~~-~~~~~~~~L~~l~l~~~~l~~~~~----~~~~~~~L~~L~l~~~~~~~----~l~~~~~~l~~L~~L~l~~~~ 258 (283)
+.. ++ ..+..+++|+.+++++|.++.++. .....+.++.+++.++.... .+|+.+..+++|+.|++++|.
T Consensus 210 l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 210 HIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp STT-HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred ccc-chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 532 33 233346667777777766663221 11234445555555543321 245556778888888888888
Q ss_pred cccccHHh-hccCCCCceeeccCC
Q 036017 259 ISQLPSSI-ADLKQVDGLSFYGCR 281 (283)
Q Consensus 259 i~~~~~~~-~~~~~L~~L~l~~c~ 281 (283)
++.+|..+ ..+++|++|++++|+
T Consensus 289 l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 289 LKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHHHHhcCCCCCEEEeeCCC
Confidence 88887764 788888888888875
No 48
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=3.2e-25 Score=179.65 Aligned_cols=246 Identities=20% Similarity=0.253 Sum_probs=189.9
Q ss_pred ccCceEEEecCCCCCccCCC-C-CCCcceEEecCCCCcccc-hhhhhccCCccEEEccCCCCCCCC-C-CCCCCCCCcEE
Q 036017 34 PEELRYLHWHGYPLRTLPTN-L-STDKLVVLNLPCSNVELL-WEEKKEAFKLKSVDLCNSQNLTRM-P-DLSETPNLERM 108 (283)
Q Consensus 34 ~~~L~~L~l~~~~~~~~~~~-~-~~~~L~~l~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~-~-~~~~~~~L~~L 108 (283)
|+++++|+++++.+..++.. + .+++|+.|++++|.+..+ +..+.++++|+.|++++|.....+ + .+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 33899999999999877753 3 889999999999999876 567888999999999998744444 3 57889999999
Q ss_pred eeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCC
Q 036017 109 YLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSK 188 (283)
Q Consensus 109 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 188 (283)
++++|......+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR-DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhc-cCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 9999876665667788899999999999987653334454 789999999999887665555688899999999999888
Q ss_pred CCCCchhhhcCCCCcEEeecCCCccccchh-hhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc-cccHHh
Q 036017 189 LESFPGILENMARLEYIDLRLTAIKELPSS-VEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS-QLPSSI 266 (283)
Q Consensus 189 ~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~ 266 (283)
.+..+..+..+++|+.|++++|.++.++.. +..+++|+.|++++|+...+.+.. .....++.+..+.+.+. ..|..+
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGG
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHh
Confidence 877778888999999999999999977654 788999999999998765432211 11134555556666665 556554
Q ss_pred h--ccCCCCceeeccCC
Q 036017 267 A--DLKQVDGLSFYGCR 281 (283)
Q Consensus 267 ~--~~~~L~~L~l~~c~ 281 (283)
. .+..++..++.+|+
T Consensus 269 ~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 269 AGRDLKRLAANDLQGCA 285 (285)
T ss_dssp TTCBGGGSCGGGSCCC-
T ss_pred CCcChhhcCHHHhccCC
Confidence 3 35667777787774
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=2.9e-25 Score=185.38 Aligned_cols=248 Identities=17% Similarity=0.141 Sum_probs=199.3
Q ss_pred CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccchhh-hhc
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELLWEE-KKE 78 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~~~-l~~ 78 (283)
++|++|++++|.+.+ ..+..+..++ +|++|+++++.+..++. .+ ++++|++|++++|.+..++.. +.+
T Consensus 52 ~~L~~L~l~~n~i~~--------~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 122 (353)
T 2z80_A 52 EAVKSLDLSNNRITY--------ISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP 122 (353)
T ss_dssp TTCCEEECTTSCCCE--------ECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTT
T ss_pred ccCcEEECCCCcCcc--------cCHHHhccCC-CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCC
Confidence 478999999998874 3344788899 99999999999987754 34 899999999999999988765 788
Q ss_pred cCCccEEEccCCCCCCCCC--CCCCCCCCcEEeeeCCCCCCcc-hhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccC
Q 036017 79 AFKLKSVDLCNSQNLTRMP--DLSETPNLERMYLLNCTNLPFI-SSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLE 155 (283)
Q Consensus 79 ~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 155 (283)
+++|+.|++++|....... .+..+++|++|++++|.....+ +..+..+++|++|++++|.+.+..+..+. .+++|+
T Consensus 123 l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~ 201 (353)
T 2z80_A 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK-SIQNVS 201 (353)
T ss_dssp CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEE
T ss_pred CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh-ccccCC
Confidence 9999999999997553322 4788999999999998544444 55688999999999999988776677776 899999
Q ss_pred EEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchh---hhcCCCCcEEeecCCCcc-----ccchhhhcCCCccE
Q 036017 156 VLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGI---LENMARLEYIDLRLTAIK-----ELPSSVEHLEGLKE 227 (283)
Q Consensus 156 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~l~l~~~~l~-----~~~~~~~~~~~L~~ 227 (283)
.|++++|.+.......+..+++|++|++++|.+.+..+.. ......++.+++.++.+. .+|..+..+++|+.
T Consensus 202 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~ 281 (353)
T 2z80_A 202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE 281 (353)
T ss_dssp EEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCE
T ss_pred eecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCE
Confidence 9999998864443334556899999999998877643322 234567888888888776 57778899999999
Q ss_pred EecccccCCCCCccc-cCCCcccceeecCCcccc
Q 036017 228 LRMEYCYKLSKLPDN-LGSLRSLKRLHTGKSAIS 260 (283)
Q Consensus 228 L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~i~ 260 (283)
|++++|... .+|.. +..+++|+.|++++|.++
T Consensus 282 L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 282 LEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 999998655 66665 588999999999999987
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=8.4e-26 Score=184.96 Aligned_cols=255 Identities=18% Similarity=0.170 Sum_probs=200.8
Q ss_pred CCceeEEeeccccCCCCCCCcccccC-CcCCCcccCceEEEecCCCCCcc---CCCC-CCCcceEEecCCCCcccchhhh
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLD-QGLDYLPEELRYLHWHGYPLRTL---PTNL-STDKLVVLNLPCSNVELLWEEK 76 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~---~~~~-~~~~L~~l~l~~~~~~~~~~~l 76 (283)
++|++|++++|.+.. ++ ..+..++ +|++|+++++.+..+ +..+ .+++|++|++++|.+..++..+
T Consensus 28 ~~l~~L~L~~n~l~~---------i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~ 97 (306)
T 2z66_A 28 SSATRLELESNKLQS---------LPHGVFDKLT-QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 97 (306)
T ss_dssp TTCCEEECCSSCCCC---------CCTTTTTTCT-TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEE
T ss_pred CCCCEEECCCCccCc---------cCHhHhhccc-cCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhc
Confidence 478999999998874 44 4578899 999999999998654 2233 7899999999999999888888
Q ss_pred hccCCccEEEccCCCCCCCC--CCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcC-CChhHhhcCCCc
Q 036017 77 KEAFKLKSVDLCNSQNLTRM--PDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILG-PFPAFISLSLTN 153 (283)
Q Consensus 77 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~ 153 (283)
..+++|+.|++++|...... ..+..+++|++|++++|......+..+..+++|++|++++|.+.+ ..|..+. .+++
T Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~ 176 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-ELRN 176 (306)
T ss_dssp ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCT-TCTT
T ss_pred CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHh-hCcC
Confidence 89999999999999755443 257889999999999987666667778899999999999998765 3555565 8899
Q ss_pred cCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccc-cchhhhcC-CCccEEecc
Q 036017 154 LEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKE-LPSSVEHL-EGLKELRME 231 (283)
Q Consensus 154 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~~~~~-~~L~~L~l~ 231 (283)
|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.+++++|.+.. .+..+..+ ++|+.|+++
T Consensus 177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256 (306)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEcc
Confidence 9999999998877777788999999999999998877666678889999999999999984 45556777 499999999
Q ss_pred cccCCCCCc--cccCCCcccceeecCCcccc-cccHHhh
Q 036017 232 YCYKLSKLP--DNLGSLRSLKRLHTGKSAIS-QLPSSIA 267 (283)
Q Consensus 232 ~~~~~~~l~--~~~~~l~~L~~L~l~~~~i~-~~~~~~~ 267 (283)
+|+....-. ....-+...+.+.+..+.+. ..|..+.
T Consensus 257 ~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~ 295 (306)
T 2z66_A 257 QNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 295 (306)
T ss_dssp TCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred CCCeecccChHHHHHHHHhhhhhhccccccccCCchhhC
Confidence 987654321 11112334455555555555 4455443
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=2.7e-24 Score=185.30 Aligned_cols=241 Identities=20% Similarity=0.225 Sum_probs=138.4
Q ss_pred ceEEEecCCCCCccCCCCCCCcceEEecCCCCcccc-hhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCC
Q 036017 37 LRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELL-WEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCT 114 (283)
Q Consensus 37 L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 114 (283)
...++.++..+..+|... .++++.|++++|.+..+ +..+.++++|+.|++++|.+....+ .+..+++|++|++++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 345555555555555433 25666666666666654 3445566666666666665433332 45666666666666655
Q ss_pred CCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchh-hhcCCCCCCeEeecCCCCCCCCc
Q 036017 115 NLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSA-SICKLKSLSWLRLYNCSKLESFP 193 (283)
Q Consensus 115 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~ 193 (283)
.....+..+..+++|++|++++|.+....+..+. .+++|+.|++++|.....++. .+..+++|++|++++|.+.+ ++
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~ 212 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN-RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP 212 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTT-TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHh-cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc
Confidence 4333333455666666666666665432222333 566666666666544443333 35566666666666665543 22
Q ss_pred hhhhcCCCCcEEeecCCCcccc-chhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccH-HhhccCC
Q 036017 194 GILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPS-SIADLKQ 271 (283)
Q Consensus 194 ~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~ 271 (283)
.+..+++|+.|++++|.++.+ +..+..+++|+.|++++|......+..+..+++|+.|++++|.++.++. .+..+++
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred -cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence 345566666666666666644 4445666666666666665554445556666666666666666665543 3455666
Q ss_pred CCceeeccCC
Q 036017 272 VDGLSFYGCR 281 (283)
Q Consensus 272 L~~L~l~~c~ 281 (283)
|++|++++|+
T Consensus 292 L~~L~L~~Np 301 (452)
T 3zyi_A 292 LVELHLHHNP 301 (452)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEccCCC
Confidence 6666666654
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=2.9e-24 Score=174.05 Aligned_cols=221 Identities=15% Similarity=0.124 Sum_probs=178.3
Q ss_pred eEEEecCCCCCccCCCCCCCcceEEecCCCCcccch-hhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCC
Q 036017 38 RYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLW-EEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTN 115 (283)
Q Consensus 38 ~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~ 115 (283)
+.++.++..+..+|... .++|+.|+++++.+..++ ..+..+++|+.|++++|......+ .+..+++|++|++++|..
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 57788888888887644 579999999999999776 457889999999999987554434 588899999999999863
Q ss_pred CCc-chhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCch
Q 036017 116 LPF-ISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPG 194 (283)
Q Consensus 116 ~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 194 (283)
... .+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+....+..++.+++|++|++++|.+....+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 444 466788899999999999987764455555 789999999999887666666678899999999999877754445
Q ss_pred hhhcCCCCcEEeecCCCcccc-chhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc
Q 036017 195 ILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS 260 (283)
Q Consensus 195 ~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~ 260 (283)
.+..+++|+.+++++|.++.+ +..+..+++|+.|++++|...+..+..+..+++|+.|++++|.++
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 678889999999999999855 667888999999999998766544456888999999999999886
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=3e-24 Score=184.32 Aligned_cols=222 Identities=18% Similarity=0.219 Sum_probs=99.7
Q ss_pred CceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccch-hhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeee
Q 036017 36 ELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELLW-EEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLL 111 (283)
Q Consensus 36 ~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~ 111 (283)
+++.|+++++.+..++. .+ ++++|+.|++++|.+..++ ..+.++++|+.|++++|......+ .+..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 45555555555544332 12 4555555555555554433 234445555555555554222211 24445555555555
Q ss_pred CCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCC
Q 036017 112 NCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLES 191 (283)
Q Consensus 112 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 191 (283)
+|......+..+..+++|++|+++++...+.++......+++|+.|++++|.+. .++ .+..+++|++|++++|.+.+.
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEE
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCcc
Confidence 544332222234445555555555433333233221114455555555554432 222 234445555555555444443
Q ss_pred CchhhhcCCCCcEEeecCCCccccc-hhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCccc
Q 036017 192 FPGILENMARLEYIDLRLTAIKELP-SSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAI 259 (283)
Q Consensus 192 ~~~~~~~~~~L~~l~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i 259 (283)
.+..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|......+..+..+++|+.|++++|.+
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 3444445555555555555554332 2234445555555555443333333344445555555555444
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.4e-26 Score=190.43 Aligned_cols=238 Identities=16% Similarity=0.100 Sum_probs=175.2
Q ss_pred CCCcccCceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcE
Q 036017 30 LDYLPEELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLER 107 (283)
Q Consensus 30 ~~~~~~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 107 (283)
...++ +|++|+++++.+..+++ .+ .+++|+.|++++|.+...+. +..+++|+.|++++|... . +...++|++
T Consensus 30 ~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~-~---l~~~~~L~~ 103 (317)
T 3o53_A 30 RQSAW-NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-E---LLVGPSIET 103 (317)
T ss_dssp HTTGG-GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEE-E---EEECTTCCE
T ss_pred hccCC-CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccc-c---ccCCCCcCE
Confidence 44566 88888888888877653 23 78888888888888876554 777888888888888633 2 224478888
Q ss_pred EeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhh-cCCCCCCeEeecCC
Q 036017 108 MYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASI-CKLKSLSWLRLYNC 186 (283)
Q Consensus 108 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~ 186 (283)
|++++|......+ ..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+....+..+ ..+++|++|++++|
T Consensus 104 L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 104 LHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp EECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 8888876543322 3467888888888887653343444 67888888888887766555554 46788888888887
Q ss_pred CCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc--cccH
Q 036017 187 SKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS--QLPS 264 (283)
Q Consensus 187 ~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~--~~~~ 264 (283)
.+... + ....+++|+.|++++|.++.++..+..+++|+.|++++|.. +.+|..+..+++|+.|++++|.++ .++.
T Consensus 180 ~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 180 FIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp CCCEE-E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCC-CEECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred cCccc-c-cccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcc-cchhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence 76543 2 22347888889998888888877788888899999988754 457777888888889999888887 6667
Q ss_pred HhhccCCCCceeeccC
Q 036017 265 SIADLKQVDGLSFYGC 280 (283)
Q Consensus 265 ~~~~~~~L~~L~l~~c 280 (283)
.+..++.|+.+++.++
T Consensus 257 ~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 257 FFSKNQRVQTVAKQTV 272 (317)
T ss_dssp HHHTCHHHHHHHHHHH
T ss_pred HHhccccceEEECCCc
Confidence 7777777777776643
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.1e-26 Score=191.19 Aligned_cols=238 Identities=16% Similarity=0.064 Sum_probs=193.5
Q ss_pred CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCC
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFK 81 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~ 81 (283)
++|++|++++|.+.+ ..+..+..++ +|++|++++|.+...++...+++|+.|++++|.+..++ ..++
T Consensus 34 ~~L~~L~L~~n~l~~--------~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~ 100 (317)
T 3o53_A 34 WNVKELDLSGNPLSQ--------ISAADLAPFT-KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL----VGPS 100 (317)
T ss_dssp GGCSEEECTTSCCCC--------CCHHHHTTCT-TCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE----ECTT
T ss_pred CCCCEEECcCCccCc--------CCHHHhhCCC-cCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc----CCCC
Confidence 589999999998885 4456788899 99999999999876655558999999999999998765 3589
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccC
Q 036017 82 LKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAH 161 (283)
Q Consensus 82 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 161 (283)
|+.|++++|...... ...+++|++|++++|......+..+..+++|++|++++|.+.+..+..+...+++|+.|++++
T Consensus 101 L~~L~l~~n~l~~~~--~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 101 IETLHAANNNISRVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp CCEEECCSSCCSEEE--ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred cCEEECCCCccCCcC--ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 999999998754332 234788999999998766555557788899999999999887654555533689999999999
Q ss_pred CcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCC-CCCc
Q 036017 162 CKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKL-SKLP 240 (283)
Q Consensus 162 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~-~~l~ 240 (283)
|.+... + ....+++|++|++++|.+.+ ++..+..+++|+.+++++|.++.+|..+..+++|+.|++++|+.. ..++
T Consensus 179 N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~ 255 (317)
T 3o53_A 179 NFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (317)
T ss_dssp SCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred CcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHH
Confidence 886544 3 23458899999999987765 455588899999999999999999988889999999999998877 5677
Q ss_pred cccCCCcccceeecCCc
Q 036017 241 DNLGSLRSLKRLHTGKS 257 (283)
Q Consensus 241 ~~~~~l~~L~~L~l~~~ 257 (283)
..+..+++|+.++++++
T Consensus 256 ~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 256 DFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp HHHHTCHHHHHHHHHHH
T ss_pred HHHhccccceEEECCCc
Confidence 78888999999988853
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=7.9e-24 Score=182.35 Aligned_cols=225 Identities=19% Similarity=0.192 Sum_probs=178.0
Q ss_pred ccCceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccch-hhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEe
Q 036017 34 PEELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELLW-EEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMY 109 (283)
Q Consensus 34 ~~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~ 109 (283)
|+++++|+++++.+..++. .+ ++++|+.|++++|.+..++ ..+.++++|+.|++++|......+ .+..+++|++|+
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 3489999999999877644 33 8899999999999988765 567789999999999988544333 378899999999
Q ss_pred eeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCC
Q 036017 110 LLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKL 189 (283)
Q Consensus 110 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 189 (283)
+++|......+..+..+++|+.|+++++...+.++......+++|+.|++++|.+... + .+..+++|++|++++|.+.
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCc
Confidence 9988765444456788999999999986655555554333788999999999876543 3 4678889999999998888
Q ss_pred CCCchhhhcCCCCcEEeecCCCcccc-chhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc
Q 036017 190 ESFPGILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS 260 (283)
Q Consensus 190 ~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~ 260 (283)
+..+..+..+++|+.|++++|.++.+ +..+..+++|+.|++++|...+..+..+..+++|+.|++++|.+.
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 77778888999999999999999855 445788899999999998665544566778899999999998765
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=9.9e-24 Score=181.14 Aligned_cols=242 Identities=20% Similarity=0.259 Sum_probs=185.3
Q ss_pred CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccch-hhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCC
Q 036017 36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLW-EEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNC 113 (283)
Q Consensus 36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~ 113 (283)
..+.++..+..+..+|..+ .++++.|++++|.+..++ ..+.++++|+.|++++|.+....+ .+..+++|++|++++|
T Consensus 44 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp TSCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4567777777788887655 368888999999888765 567788899999998887443332 5788899999999887
Q ss_pred CCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchh-hhcCCCCCCeEeecCCCCCCCC
Q 036017 114 TNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSA-SICKLKSLSWLRLYNCSKLESF 192 (283)
Q Consensus 114 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~ 192 (283)
......+..+..+++|++|++++|.+....+..+. .+++|+.|+++++.....++. .+..+++|++|++++|.+.. +
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~ 200 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN-RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-I 200 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTT-TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-C
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhh-hCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-c
Confidence 65544444678888999999998887653333444 788999999988665555444 57788899999999877663 4
Q ss_pred chhhhcCCCCcEEeecCCCcccc-chhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccH-HhhccC
Q 036017 193 PGILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPS-SIADLK 270 (283)
Q Consensus 193 ~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~ 270 (283)
+ .+..+++|+.|++++|.++.+ +..+..+++|+.|++++|......+..+..+++|+.|++++|.++.++. .+..++
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 3 467788899999999988855 5567888999999999887666666778888899999999999887664 457788
Q ss_pred CCCceeeccCC
Q 036017 271 QVDGLSFYGCR 281 (283)
Q Consensus 271 ~L~~L~l~~c~ 281 (283)
+|++|++++|+
T Consensus 280 ~L~~L~L~~Np 290 (440)
T 3zyj_A 280 HLERIHLHHNP 290 (440)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEcCCCC
Confidence 99999988875
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.5e-25 Score=183.91 Aligned_cols=242 Identities=21% Similarity=0.210 Sum_probs=191.0
Q ss_pred CCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCccc--chhhhh-------ccCCccEEEccCCCCCCCCC-CC-
Q 036017 31 DYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVEL--LWEEKK-------EAFKLKSVDLCNSQNLTRMP-DL- 99 (283)
Q Consensus 31 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~l~-------~~~~L~~L~l~~~~~~~~~~-~~- 99 (283)
...+ +|++|+++++.+ .+|... ...|+.++++++.+.. ++..+. ++++|++|++++|.....++ .+
T Consensus 40 ~~~~-~L~~l~l~~n~l-~~p~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 40 GGGR-SLEYLLKRVDTE-ADLGQF-TDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEE-ECTTHHHHCCTT-CCCHHH-HHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred ccCC-CceeEeeccccc-ccHHHH-HHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 3455 788899999988 666543 1228999999998863 444443 68999999999998776666 34
Q ss_pred -CCCCCCcEEeeeCCCCCCcchhhccCC-----CCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCccc--chhh
Q 036017 100 -SETPNLERMYLLNCTNLPFISSSIENL-----NNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNR--LSAS 171 (283)
Q Consensus 100 -~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~ 171 (283)
..+++|++|++++|..... |..+..+ ++|++|++++|.+.+..+..+. .+++|+.|++++|++.+. .+..
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHH
Confidence 8899999999999876554 5555555 8999999999998765556666 899999999999986554 3334
Q ss_pred h--cCCCCCCeEeecCCCCCC--CCc-hhhhcCCCCcEEeecCCCccccc--hhhhcCCCccEEecccccCCCCCccccC
Q 036017 172 I--CKLKSLSWLRLYNCSKLE--SFP-GILENMARLEYIDLRLTAIKELP--SSVEHLEGLKELRMEYCYKLSKLPDNLG 244 (283)
Q Consensus 172 l--~~~~~L~~L~l~~~~~~~--~~~-~~~~~~~~L~~l~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~~~l~~~~~ 244 (283)
+ ..+++|++|++++|.+.. ..+ ..+..+++|++|++++|.++..+ ..+..+++|+.|++++|... .+|..+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 4 789999999999988763 222 34457899999999999998644 34566899999999998754 7777665
Q ss_pred CCcccceeecCCcccccccHHhhccCCCCceeeccCC
Q 036017 245 SLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 245 ~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c~ 281 (283)
++|+.|++++|.++++|. +..+++|++|++++++
T Consensus 274 --~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp --SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred --CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 899999999999998877 8899999999999885
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=7.9e-25 Score=189.89 Aligned_cols=235 Identities=15% Similarity=0.109 Sum_probs=166.1
Q ss_pred CCcccCceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEE
Q 036017 31 DYLPEELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERM 108 (283)
Q Consensus 31 ~~~~~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 108 (283)
..+| +|++|+++++.+..+++ .+ .+++|+.|++++|.+...+. +..+++|+.|++++|.+. .+ ...++|+.|
T Consensus 31 ~~~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~-~l---~~~~~L~~L 104 (487)
T 3oja_A 31 QSAW-NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-EL---LVGPSIETL 104 (487)
T ss_dssp TTGG-GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEE-EE---EECTTCCEE
T ss_pred ccCC-CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCC-CC---CCCCCcCEE
Confidence 3445 78888888888766653 33 77888888888888775544 677888888888877633 22 233778888
Q ss_pred eeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhc-CCCCCCeEeecCCC
Q 036017 109 YLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASIC-KLKSLSWLRLYNCS 187 (283)
Q Consensus 109 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~ 187 (283)
++++|......+ ..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.+.+..+..+. .+++|++|++++|.
T Consensus 105 ~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp ECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred ECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 888776544322 3467788888888877664454554 678888888888877666666554 67888888888877
Q ss_pred CCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc--cccHH
Q 036017 188 KLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS--QLPSS 265 (283)
Q Consensus 188 ~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~--~~~~~ 265 (283)
+.+. + ....+++|+.|++++|.++.+|..+..+++|+.|++++|... .+|..+..+++|+.|++++|.++ .+|..
T Consensus 181 l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 181 IYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CCEE-E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred cccc-c-ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 6643 2 233577888888888888877777778888888888886544 46777777888888888888877 66666
Q ss_pred hhccCCCCceeec
Q 036017 266 IADLKQVDGLSFY 278 (283)
Q Consensus 266 ~~~~~~L~~L~l~ 278 (283)
+..++.++.+++.
T Consensus 258 ~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 FSKNQRVQTVAKQ 270 (487)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCCCCcEEecc
Confidence 6666666666553
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=8.6e-23 Score=180.97 Aligned_cols=238 Identities=18% Similarity=0.176 Sum_probs=145.5
Q ss_pred CceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCc
Q 036017 3 NLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKL 82 (283)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L 82 (283)
+++.|+++++.++ .+|..+. + +|++|++++|.+..++. .+++|+.|++++|.+..++. .+++|
T Consensus 41 ~l~~L~ls~n~L~---------~lp~~l~--~-~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L 103 (622)
T 3g06_A 41 GNAVLNVGESGLT---------TLPDCLP--A-HITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGL 103 (622)
T ss_dssp CCCEEECCSSCCS---------CCCSCCC--T-TCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTC
T ss_pred CCcEEEecCCCcC---------ccChhhC--C-CCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCC
Confidence 3556666666555 3343332 3 56666666665555554 34556666666665555543 34555
Q ss_pred cEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhc-----------------cCCCCCcEEEecCCCCcCCChh
Q 036017 83 KSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSI-----------------ENLNNLSMLRLEGCKILGPFPA 145 (283)
Q Consensus 83 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----------------~~~~~L~~L~l~~~~~~~~~~~ 145 (283)
+.|++++|.. ..++. .+++|+.|++++|.. ..+|..+ ..+++|+.|++++|.+.. +|
T Consensus 104 ~~L~Ls~N~l-~~l~~--~l~~L~~L~L~~N~l-~~lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~-l~- 177 (622)
T 3g06_A 104 LELSIFSNPL-THLPA--LPSGLCKLWIFGNQL-TSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTS-LP- 177 (622)
T ss_dssp CEEEECSCCC-CCCCC--CCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CC-
T ss_pred CEEECcCCcC-CCCCC--CCCCcCEEECCCCCC-CcCCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCC-Cc-
Confidence 5555555542 22222 334444444444332 1222110 122345555555554432 33
Q ss_pred HhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCc
Q 036017 146 FISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGL 225 (283)
Q Consensus 146 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L 225 (283)
. .+++|+.|++++|.+.. ++. ..++|+.|++.+|.+.. ++. .+++|+.|++++|.++.+| ..+++|
T Consensus 178 --~-~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L 243 (622)
T 3g06_A 178 --M-LPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP---VLPSEL 243 (622)
T ss_dssp --C-CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC---CCCTTC
T ss_pred --c-cCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC---CCCCcC
Confidence 1 45667777777765432 222 24567777777765553 332 3478999999999999887 567889
Q ss_pred cEEecccccCCCCCccccCCCcccceeecCCcccccccHHhhccCCCCceeeccCC
Q 036017 226 KELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 226 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~c~ 281 (283)
+.|++++|. ++.+|. .+++|+.|++++|.++.+|..+..+++|+.|++++|+
T Consensus 244 ~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 244 KELMVSGNR-LTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CEEECCSSC-CSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred cEEECCCCC-CCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCC
Confidence 999999975 445665 5688999999999999999999999999999999885
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.8e-24 Score=187.66 Aligned_cols=236 Identities=16% Similarity=0.064 Sum_probs=195.3
Q ss_pred CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCC
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFK 81 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~ 81 (283)
++|++|++++|.+.+ ..|..+..++ +|++|++++|.+...++...+++|+.|++++|.+..++. .++
T Consensus 34 ~~L~~L~Ls~n~l~~--------~~~~~~~~l~-~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~ 100 (487)
T 3oja_A 34 WNVKELDLSGNPLSQ--------ISAADLAPFT-KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPS 100 (487)
T ss_dssp GGCCEEECCSSCCCC--------CCGGGGTTCT-TCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE----CTT
T ss_pred CCccEEEeeCCcCCC--------CCHHHHhCCC-CCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC----CCC
Confidence 489999999999886 4467788999 999999999998665555589999999999999987653 489
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccC
Q 036017 82 LKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAH 161 (283)
Q Consensus 82 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 161 (283)
|+.|++++|.+....+ ..+++|+.|++++|......+..+..+++|+.|++++|.+.+..+..+...+++|+.|++++
T Consensus 101 L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 101 IETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp CCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred cCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 9999999987544322 35789999999998877666777888999999999999987766666543689999999999
Q ss_pred CcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCC-CCCc
Q 036017 162 CKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKL-SKLP 240 (283)
Q Consensus 162 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~-~~l~ 240 (283)
|.+... + ....+++|+.|++++|.+.+ +++.+..+++|+.|++++|.++.+|..+..+++|+.|++++|+.. +.+|
T Consensus 179 N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 179 NFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp SCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred Cccccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchH
Confidence 886554 2 23468999999999988775 455588999999999999999999988889999999999998876 4667
Q ss_pred cccCCCcccceeecC
Q 036017 241 DNLGSLRSLKRLHTG 255 (283)
Q Consensus 241 ~~~~~l~~L~~L~l~ 255 (283)
..+..++.|+.++++
T Consensus 256 ~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 256 DFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHHhCCCCcEEecc
Confidence 778888999988875
No 62
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=1.6e-22 Score=173.80 Aligned_cols=226 Identities=19% Similarity=0.237 Sum_probs=105.6
Q ss_pred CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCC
Q 036017 36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTN 115 (283)
Q Consensus 36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 115 (283)
+|++|++++|.+..+|.+..+++|+++++++|.+..++.. ..+|+.|++++|... .++.++.+++|+.|++++|..
T Consensus 132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~-~l~~~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLE-ELPELQNLPFLTAIYADNNSL 207 (454)
T ss_dssp TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCC
T ss_pred CCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCC-cCccccCCCCCCEEECCCCcC
Confidence 7777777777776666444677777777777777665542 246667777666533 355566666666666665543
Q ss_pred CCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhh-----------------cCCCCC
Q 036017 116 LPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASI-----------------CKLKSL 178 (283)
Q Consensus 116 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----------------~~~~~L 178 (283)
.. +|. ..++|++|++++|.+. .+|. +. .+++|+.|++++|.+.. ++... ..+++|
T Consensus 208 ~~-l~~---~~~~L~~L~l~~n~l~-~lp~-~~-~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~~~~L 279 (454)
T 1jl5_A 208 KK-LPD---LPLSLESIVAGNNILE-ELPE-LQ-NLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSL 279 (454)
T ss_dssp SS-CCC---CCTTCCEEECCSSCCS-SCCC-CT-TCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTC
T ss_pred Cc-CCC---CcCcccEEECcCCcCC-cccc-cC-CCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcccCcC
Confidence 22 211 1124444444444433 2332 22 44444444444443221 11100 012344
Q ss_pred CeEeecCCCCCC--CCchhh-------------hcC-CCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccc
Q 036017 179 SWLRLYNCSKLE--SFPGIL-------------ENM-ARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDN 242 (283)
Q Consensus 179 ~~L~l~~~~~~~--~~~~~~-------------~~~-~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~ 242 (283)
++|++++|.+.+ ..+..+ ..+ ++|+.+++++|.++.+|.. +++|+.|++++|.. +.+|.
T Consensus 280 ~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l-~~lp~- 354 (454)
T 1jl5_A 280 TFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHL-AEVPE- 354 (454)
T ss_dssp CEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC-SCCCC-
T ss_pred CEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCCcc-ccccc-
Confidence 444444443332 111100 011 2455555555555544432 35566666666533 23444
Q ss_pred cCCCcccceeecCCccccc---ccHHhhcc-------------CCCCceeeccC
Q 036017 243 LGSLRSLKRLHTGKSAISQ---LPSSIADL-------------KQVDGLSFYGC 280 (283)
Q Consensus 243 ~~~l~~L~~L~l~~~~i~~---~~~~~~~~-------------~~L~~L~l~~c 280 (283)
.+++|+.|++++|.+++ +|..+..+ ++|++|++++|
T Consensus 355 --~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N 406 (454)
T 1jl5_A 355 --LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN 406 (454)
T ss_dssp --CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------
T ss_pred --hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC
Confidence 34566666666666653 44444444 56666666655
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=3.3e-25 Score=191.44 Aligned_cols=274 Identities=18% Similarity=0.116 Sum_probs=155.6
Q ss_pred CceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCcc-----CCC-C-CCCcceEEecCCCCccc----
Q 036017 3 NLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTL-----PTN-L-STDKLVVLNLPCSNVEL---- 71 (283)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~-~-~~~~L~~l~l~~~~~~~---- 71 (283)
+|++|++++|.++.. ....++..+..++ +|++|++++|.+... ... . ..++|+.|++++|.+..
T Consensus 86 ~L~~L~L~~n~i~~~----~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGA----GCGVLSSTLRTLP-TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CCCEEECTTSCCBGG----GHHHHHHHTTSCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred ceeEEEccCCCCCHH----HHHHHHHHHccCC-ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 455555555554420 0113344555566 666666666655221 110 1 23456666666665552
Q ss_pred -chhhhhccCCccEEEccCCCCCCCCC-CCC-----CCCCCcEEeeeCCCCCCc----chhhccCCCCCcEEEecCCCCc
Q 036017 72 -LWEEKKEAFKLKSVDLCNSQNLTRMP-DLS-----ETPNLERMYLLNCTNLPF----ISSSIENLNNLSMLRLEGCKIL 140 (283)
Q Consensus 72 -~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~ 140 (283)
++..+..+++|+.|++++|....... .+. ..++|++|++++|..... ++..+..+++|++|++++|.+.
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 23344555666666666665322111 111 245677777776654432 3455566777777777777654
Q ss_pred CCCh----hHhhcCCCccCEEeccCCcCccc----chhhhcCCCCCCeEeecCCCCCCCCchhhhc-----CCCCcEEee
Q 036017 141 GPFP----AFISLSLTNLEVLDLAHCKRLNR----LSASICKLKSLSWLRLYNCSKLESFPGILEN-----MARLEYIDL 207 (283)
Q Consensus 141 ~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~l~l 207 (283)
+... ..+...+++|+.|++++|.+... ++..+..+++|++|++++|.+....+..+.. .++|+.|++
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 3211 11211466777777777765432 4445556777777777776654322222221 257777777
Q ss_pred cCCCccc-----cchhhhcCCCccEEecccccCCCCCccc----cCC-CcccceeecCCcccc-----cccHHhhccCCC
Q 036017 208 RLTAIKE-----LPSSVEHLEGLKELRMEYCYKLSKLPDN----LGS-LRSLKRLHTGKSAIS-----QLPSSIADLKQV 272 (283)
Q Consensus 208 ~~~~l~~-----~~~~~~~~~~L~~L~l~~~~~~~~l~~~----~~~-l~~L~~L~l~~~~i~-----~~~~~~~~~~~L 272 (283)
++|.++. ++..+..+++|+.|++++|......+.. +.. .++|+.|++++|.++ .++..+..+++|
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence 7777762 4555667788888888887543322222 222 568888888888887 567777788888
Q ss_pred CceeeccCC
Q 036017 273 DGLSFYGCR 281 (283)
Q Consensus 273 ~~L~l~~c~ 281 (283)
++|++++|+
T Consensus 401 ~~L~l~~N~ 409 (461)
T 1z7x_W 401 RELDLSNNC 409 (461)
T ss_dssp CEEECCSSS
T ss_pred cEEECCCCC
Confidence 888888774
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=6.3e-23 Score=176.36 Aligned_cols=201 Identities=21% Similarity=0.183 Sum_probs=97.2
Q ss_pred CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCC
Q 036017 36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTN 115 (283)
Q Consensus 36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 115 (283)
+|++|+++++.+..+|.. .++|+.+++++|.+..++.. .++|+.|++++|... .++.++.+++|++|++++|..
T Consensus 92 ~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~-~lp~~~~l~~L~~L~l~~N~l 165 (454)
T 1jl5_A 92 HLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLE-KLPELQNSSFLKIIDVDNNSL 165 (454)
T ss_dssp TCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCC
T ss_pred CCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCC-CCcccCCCCCCCEEECCCCcC
Confidence 444444444444333322 24444444444444433221 135555555555432 244455555555555555433
Q ss_pred CCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchh
Q 036017 116 LPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGI 195 (283)
Q Consensus 116 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 195 (283)
. .+|.. ..+|++|++++|.+.+ +| .+. .+++|+.|++++|.+.+ ++.. .++|++|++++|.+. .+| .
T Consensus 166 ~-~lp~~---~~~L~~L~L~~n~l~~-l~-~~~-~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~ 232 (454)
T 1jl5_A 166 K-KLPDL---PPSLEFIAAGNNQLEE-LP-ELQ-NLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-E 232 (454)
T ss_dssp S-CCCCC---CTTCCEEECCSSCCSS-CC-CCT-TCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-C
T ss_pred c-ccCCC---cccccEEECcCCcCCc-Cc-ccc-CCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-c
Confidence 2 22211 2355555555555433 33 233 55556666665554332 1211 235666666655444 344 2
Q ss_pred hhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccc
Q 036017 196 LENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQL 262 (283)
Q Consensus 196 ~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~ 262 (283)
+..+++|+++++++|.++.+|. ..++|+.|++++|... .+|.. +++|+.|++++|.++++
T Consensus 233 ~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~-~l~~~---~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLT-DLPEL---PQSLTFLDVSENIFSGL 292 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSEE
T ss_pred cCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCccc-ccCcc---cCcCCEEECcCCccCcc
Confidence 5556666666666666665543 2355666666665432 23332 24566666666666544
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=2.8e-25 Score=191.89 Aligned_cols=227 Identities=19% Similarity=0.164 Sum_probs=100.5
Q ss_pred CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCcc--CCCC-CCC----cceEEecCCCCcc----
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTL--PTNL-STD----KLVVLNLPCSNVE---- 70 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~-~~~----~L~~l~l~~~~~~---- 70 (283)
++|++|++++|.+.+. ....++..+..++ +|++|+++++.+... .... .++ +|++|++++|.+.
T Consensus 28 ~~L~~L~L~~~~l~~~----~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEA----RCKDISSALRVNP-ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp TTCSEEEEESSCCCHH----HHHHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred CCccEEEccCCCCCHH----HHHHHHHHHHhCC-CcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 4556666665554420 0112344455555 666666666655221 1111 222 4666666666555
Q ss_pred -cchhhhhccCCccEEEccCCCCCCCCC-C-----CCCCCCCcEEeeeCCCCCCc----chhhccCCCCCcEEEecCCCC
Q 036017 71 -LLWEEKKEAFKLKSVDLCNSQNLTRMP-D-----LSETPNLERMYLLNCTNLPF----ISSSIENLNNLSMLRLEGCKI 139 (283)
Q Consensus 71 -~~~~~l~~~~~L~~L~l~~~~~~~~~~-~-----~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~ 139 (283)
.++..+..+++|+.|++++|....... . ....++|++|++++|..... ++..+..+++|++|++++|.+
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 234445556666666666555321100 0 12234455555555543321 233344455555555555544
Q ss_pred cCCChhHhh----cCCCccCEEeccCCcCccc----chhhhcCCCCCCeEeecCCCCCCCC-----chhhhcCCCCcEEe
Q 036017 140 LGPFPAFIS----LSLTNLEVLDLAHCKRLNR----LSASICKLKSLSWLRLYNCSKLESF-----PGILENMARLEYID 206 (283)
Q Consensus 140 ~~~~~~~~~----~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~l~ 206 (283)
.+..+..+. ...++|+.|++++|.+... ++..+..+++|++|++++|.+.... +..+..+++|++|+
T Consensus 183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~ 262 (461)
T 1z7x_W 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262 (461)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEE
Confidence 322111111 0233555555555543321 2333444555555555554432210 01111244455555
Q ss_pred ecCCCccc-----cchhhhcCCCccEEecccc
Q 036017 207 LRLTAIKE-----LPSSVEHLEGLKELRMEYC 233 (283)
Q Consensus 207 l~~~~l~~-----~~~~~~~~~~L~~L~l~~~ 233 (283)
+++|.++. ++..+..+++|++|++++|
T Consensus 263 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred CcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 55554442 3444444555555555554
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=4e-22 Score=160.71 Aligned_cols=197 Identities=21% Similarity=0.249 Sum_probs=106.1
Q ss_pred CceEEEecCCCCCccCC-CC-CCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeee
Q 036017 36 ELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLL 111 (283)
Q Consensus 36 ~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~ 111 (283)
++++|+++++.+..++. .+ ++++|+.|++++|.+..++. .+.++++|+.|++++|......+ .+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 67777777777765554 22 66777777777776665543 45566677777776665433332 35666666666666
Q ss_pred CCCCCCcchhhccCCCCCcEEEecCCCCcC-CChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCC----eEeecCC
Q 036017 112 NCTNLPFISSSIENLNNLSMLRLEGCKILG-PFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLS----WLRLYNC 186 (283)
Q Consensus 112 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~----~L~l~~~ 186 (283)
+|......+..+..+++|++|++++|.+.+ .+|..+. .+++|+.|++++|.+....+..+..+++++ +|++++|
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhc-cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 655433333345566666666666665543 2344444 566666666666554443333333333333 4555554
Q ss_pred CCCCCCchhhhcCCCCcEEeecCCCccccchh-hhcCCCccEEeccccc
Q 036017 187 SKLESFPGILENMARLEYIDLRLTAIKELPSS-VEHLEGLKELRMEYCY 234 (283)
Q Consensus 187 ~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~ 234 (283)
.+....+. .....+|+.|++++|.++.++.. +..+++|+.|++++|+
T Consensus 188 ~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 188 PMNFIQPG-AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCCEECTT-SSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred cccccCcc-ccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 44322211 12223455555555555544433 2445555555555544
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=6.1e-23 Score=165.10 Aligned_cols=173 Identities=20% Similarity=0.184 Sum_probs=75.2
Q ss_pred CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCC
Q 036017 36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCT 114 (283)
Q Consensus 36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 114 (283)
+|+.|+++++.+..++....+++|+.|++++|.+..++ .+..+++|+.|++++|......+ .+..+++|++|++++|.
T Consensus 42 ~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 120 (272)
T 3rfs_A 42 SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120 (272)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc
Confidence 55555555555544443334555555555555554432 34445555555555544322222 13444555555554444
Q ss_pred CCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCch
Q 036017 115 NLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPG 194 (283)
Q Consensus 115 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 194 (283)
.....+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+....+..++.+++|++|++++|.+.+..+.
T Consensus 121 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (272)
T 3rfs_A 121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD-KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG 199 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CCccCHHHhccCCCCCEEECCCCccCccCHHHhc-cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH
Confidence 3322222334444445555544443321111222 444444444444443333333334444444444444444433333
Q ss_pred hhhcCCCCcEEeecCC
Q 036017 195 ILENMARLEYIDLRLT 210 (283)
Q Consensus 195 ~~~~~~~L~~l~l~~~ 210 (283)
.+..+++|+.+++++|
T Consensus 200 ~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 200 VFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TTTTCTTCCEEECCSS
T ss_pred HHhCCcCCCEEEccCC
Confidence 3344444444444444
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=9.1e-23 Score=167.31 Aligned_cols=202 Identities=21% Similarity=0.201 Sum_probs=128.3
Q ss_pred CCcceEEecCCCCcc-cchhhh--hccCCccEEEccCCCCCCCCCCCCCC-----CCCcEEeeeCCCCCCcchhhccCCC
Q 036017 56 TDKLVVLNLPCSNVE-LLWEEK--KEAFKLKSVDLCNSQNLTRMPDLSET-----PNLERMYLLNCTNLPFISSSIENLN 127 (283)
Q Consensus 56 ~~~L~~l~l~~~~~~-~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~ 127 (283)
+++|++|++++|.+. .++..+ ..+++|+.|++++|........++.+ ++|++|++++|......+..+..++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 566666666666665 344433 55666677776666644331122333 6677777776665444445666777
Q ss_pred CCcEEEecCCCCcCC--ChhHh-hcCCCccCEEeccCCcCcc--cch-hhhcCCCCCCeEeecCCCCCCCCc-hhhhcCC
Q 036017 128 NLSMLRLEGCKILGP--FPAFI-SLSLTNLEVLDLAHCKRLN--RLS-ASICKLKSLSWLRLYNCSKLESFP-GILENMA 200 (283)
Q Consensus 128 ~L~~L~l~~~~~~~~--~~~~~-~~~~~~L~~L~l~~~~~~~--~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~ 200 (283)
+|++|++++|.+.+. .+..+ ...+++|+.|++++|.+.. ..+ ..+..+++|++|++++|.+.+..+ ..+..++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 777777777665432 12222 1266777777777776542 222 223466777888887777666543 3445567
Q ss_pred CCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCccccc
Q 036017 201 RLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQ 261 (283)
Q Consensus 201 ~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~ 261 (283)
+|++|++++|.++.+|..+. ++|+.|++++|... .+|. +..+++|+.|++++|.+++
T Consensus 254 ~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~-~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 254 QLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCC-SCCC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCEEECCCCccChhhhhcc--CCceEEECCCCCCC-CChh-HhhCCCCCEEeccCCCCCC
Confidence 88888888888887776655 78888888887544 3455 7788888888888888764
No 69
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=1.1e-21 Score=157.82 Aligned_cols=225 Identities=16% Similarity=0.136 Sum_probs=180.9
Q ss_pred CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCC
Q 036017 36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTN 115 (283)
Q Consensus 36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 115 (283)
++..+++.+..+..+.....+++|+.+++.++.+..++. +..+++|+.|++++|.. ..++.+..+++|++|++++|..
T Consensus 20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKL-HDISALKELTNLTYLILTGNQL 97 (272)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCC-CCCGGGTTCTTCCEEECTTSCC
T ss_pred HHHHHHhcCcccccccccccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCC-CCchhhcCCCCCCEEECCCCcc
Confidence 566667777766555444478999999999999887653 77899999999999984 4466788999999999999876
Q ss_pred CCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchh
Q 036017 116 LPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGI 195 (283)
Q Consensus 116 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 195 (283)
....+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+....+..++.+++|++|++++|.+.+..+..
T Consensus 98 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 176 (272)
T 3rfs_A 98 QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CccChhHhcCCcCCCEEECCCCcCCccCHHHhc-cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH
Confidence 655555678999999999999988764444455 8899999999999877666666788999999999999888666666
Q ss_pred hhcCCCCcEEeecCCCccccchh-hhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc-cccHHhhccC
Q 036017 196 LENMARLEYIDLRLTAIKELPSS-VEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS-QLPSSIADLK 270 (283)
Q Consensus 196 ~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~~~ 270 (283)
+..+++|+.|++++|.++.++.. +..+++|+.|++++|+.. +.+++++.++++.|.++ .+|..++.++
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 78899999999999999976654 688999999999998643 45678899998888877 6666555443
No 70
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=3.6e-22 Score=165.47 Aligned_cols=200 Identities=21% Similarity=0.315 Sum_probs=84.9
Q ss_pred CcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCC-CC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEe
Q 036017 57 DKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTR-MP-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRL 134 (283)
Q Consensus 57 ~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 134 (283)
+.++.++++++.+...+..+..+++|+.|++++|..... ++ .+..+++|++|++++|......+..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 444555555554443333333445555555554442211 22 2344455555555544433334444444555555555
Q ss_pred cCC-CCcC-CChhHhhcCCCccCEEeccCC-cCccc-chhhhcCCC-CCCeEeecCCC--CC-CCCchhhhcCCCCcEEe
Q 036017 135 EGC-KILG-PFPAFISLSLTNLEVLDLAHC-KRLNR-LSASICKLK-SLSWLRLYNCS--KL-ESFPGILENMARLEYID 206 (283)
Q Consensus 135 ~~~-~~~~-~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~-~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~l~ 206 (283)
++| .+.+ .++..+. .+++|+.|++++| .+... ++..+..++ +|++|++++|. +. ..++..+..+++|+.|+
T Consensus 150 ~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 150 SGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp TTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 544 2221 1222232 4445555555554 32221 233344444 55555555442 22 12333344445555555
Q ss_pred ecCCC-cc-ccchhhhcCCCccEEecccccCCC-CCccccCCCcccceeecCCc
Q 036017 207 LRLTA-IK-ELPSSVEHLEGLKELRMEYCYKLS-KLPDNLGSLRSLKRLHTGKS 257 (283)
Q Consensus 207 l~~~~-l~-~~~~~~~~~~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~ 257 (283)
+++|. ++ ..+..+..+++|+.|++++|.... .....+..+++|+.|++++|
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 55554 32 333344444555555555543211 11112344445555555544
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=2.4e-21 Score=156.14 Aligned_cols=220 Identities=17% Similarity=0.122 Sum_probs=174.9
Q ss_pred EEEecCCCCCccCCCCCCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCC
Q 036017 39 YLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNL 116 (283)
Q Consensus 39 ~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 116 (283)
.++..+..+..+|... .++|+.|++++|.+..++. .+.++++|+.|++++|......+ .+..+++|++|++++|...
T Consensus 11 ~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred eEEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 3444555566676654 3679999999999997765 67889999999999997554443 5888999999999998766
Q ss_pred CcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCccc-chhhhcCCCCCCeEeecCCCCCCCCchh
Q 036017 117 PFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNR-LSASICKLKSLSWLRLYNCSKLESFPGI 195 (283)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 195 (283)
...+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+... ++..++.+++|++|++++|.+.+..+..
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 55556788999999999999987653333454 889999999999887653 5778889999999999998887665566
Q ss_pred hhcCCCCc----EEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc
Q 036017 196 LENMARLE----YIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS 260 (283)
Q Consensus 196 ~~~~~~L~----~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~ 260 (283)
+..+.+|+ .+++++|.+..++.......+|+.|++++|...+..+..+..+++|+.|++++|.++
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred hhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 66666666 899999999988777666678999999998755444455688999999999999887
No 72
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=4.8e-23 Score=173.98 Aligned_cols=234 Identities=18% Similarity=0.138 Sum_probs=131.6
Q ss_pred ccCCcCCCcccCceEEEecCCCCCc-----cCCCC-CCCcceEEecCCCCccc----chhh-------hhccCCccEEEc
Q 036017 25 HLDQGLDYLPEELRYLHWHGYPLRT-----LPTNL-STDKLVVLNLPCSNVEL----LWEE-------KKEAFKLKSVDL 87 (283)
Q Consensus 25 ~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~-~~~~L~~l~l~~~~~~~----~~~~-------l~~~~~L~~L~l 87 (283)
.++..+..++ +|++|++++|.+.. ++..+ .+++|+.|++++|.+.. +|.. +..+++|+.|++
T Consensus 23 ~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHHCS-CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhcCC-CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 3445556666 77777777776643 22223 56777777777764332 2222 345677777777
Q ss_pred cCCCCCCC----CC-CCCCCCCCcEEeeeCCCCCCc----chhhccCC---------CCCcEEEecCCCCcC-CCh---h
Q 036017 88 CNSQNLTR----MP-DLSETPNLERMYLLNCTNLPF----ISSSIENL---------NNLSMLRLEGCKILG-PFP---A 145 (283)
Q Consensus 88 ~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~---------~~L~~L~l~~~~~~~-~~~---~ 145 (283)
++|.+... ++ .+..+++|++|++++|..... ++..+..+ ++|++|++++|.+.. .++ .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 77664431 22 245566777777776654322 22222333 667777777666542 222 2
Q ss_pred HhhcCCCccCEEeccCCcCcc-----cchhhhcCCCCCCeEeecCCCCC----CCCchhhhcCCCCcEEeecCCCccc--
Q 036017 146 FISLSLTNLEVLDLAHCKRLN-----RLSASICKLKSLSWLRLYNCSKL----ESFPGILENMARLEYIDLRLTAIKE-- 214 (283)
Q Consensus 146 ~~~~~~~~L~~L~l~~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~l~l~~~~l~~-- 214 (283)
.+. .+++|+.|++++|.+.. ..+..+..+++|++|++++|.+. ..++..+..+++|++|++++|.++.
T Consensus 182 ~l~-~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 182 TFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHH-HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHH-hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 233 55667777777665432 12224556667777777666653 3344555666667777777766652
Q ss_pred ---cchhhh--cCCCccEEecccccCCC----CCcccc-CCCcccceeecCCcccc
Q 036017 215 ---LPSSVE--HLEGLKELRMEYCYKLS----KLPDNL-GSLRSLKRLHTGKSAIS 260 (283)
Q Consensus 215 ---~~~~~~--~~~~L~~L~l~~~~~~~----~l~~~~-~~l~~L~~L~l~~~~i~ 260 (283)
++..+. .+++|+.|++++|.... .++..+ ..+++|+.|++++|.++
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 344442 26667777776665443 244444 34566777777776666
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=8.9e-21 Score=152.29 Aligned_cols=199 Identities=23% Similarity=0.251 Sum_probs=149.0
Q ss_pred CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCC
Q 036017 36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNC 113 (283)
Q Consensus 36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~ 113 (283)
..++++++++.+..+|..+ .++++.|++++|.+..++. .+.++++|+.|++++|......+ .+..+++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 6788999998888887654 3678999999998887764 57788899999998887443322 3577888999999887
Q ss_pred CCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCc
Q 036017 114 TNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFP 193 (283)
Q Consensus 114 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 193 (283)
......+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+....+
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD-SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhC-cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 65544445567888888888888877654344444 78888888888887665555557778888888888877766555
Q ss_pred hhhhcCCCCcEEeecCCCccccchh-hhcCCCccEEecccccCC
Q 036017 194 GILENMARLEYIDLRLTAIKELPSS-VEHLEGLKELRMEYCYKL 236 (283)
Q Consensus 194 ~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~ 236 (283)
..+..+++|++|++++|.++.++.. +..+++|+.|++++|+..
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 5677788888888888888866654 567788888888887644
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.87 E-value=7.9e-21 Score=168.45 Aligned_cols=228 Identities=20% Similarity=0.177 Sum_probs=155.9
Q ss_pred CCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCC
Q 036017 2 TNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFK 81 (283)
Q Consensus 2 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~ 81 (283)
++|++|++++|.++ .+|. .++ +|++|++++|.+..+|. .+++|+.|++++|.+..++. .+++
T Consensus 61 ~~L~~L~L~~N~l~---------~lp~---~l~-~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~l~~ 122 (622)
T 3g06_A 61 AHITTLVIPDNNLT---------SLPA---LPP-ELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA---LPSG 122 (622)
T ss_dssp TTCSEEEECSCCCS---------CCCC---CCT-TCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC---CCTT
T ss_pred CCCcEEEecCCCCC---------CCCC---cCC-CCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC---CCCC
Confidence 46777777777766 3443 345 77777777777766665 46677777777776666544 3455
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCC--cchhhc--------------cCCCCCcEEEecCCCCcCCChh
Q 036017 82 LKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLP--FISSSI--------------ENLNNLSMLRLEGCKILGPFPA 145 (283)
Q Consensus 82 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~--------------~~~~~L~~L~l~~~~~~~~~~~ 145 (283)
|+.|++.+|.. ..++. .+++|++|++++|.... ..+..+ ..+++|+.|++++|.+.+ +|.
T Consensus 123 L~~L~L~~N~l-~~lp~--~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~ 198 (622)
T 3g06_A 123 LCKLWIFGNQL-TSLPV--LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPT 198 (622)
T ss_dssp CCEEECCSSCC-SCCCC--CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC
T ss_pred cCEEECCCCCC-CcCCC--CCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCC
Confidence 55555555542 22222 12444444444443221 111111 345899999999998754 443
Q ss_pred HhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCc
Q 036017 146 FISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGL 225 (283)
Q Consensus 146 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L 225 (283)
.+++|+.|++++|.+. .++. .+++|+.|++++|.+.. +| ..+++|+.|++++|.++.+|. .+++|
T Consensus 199 ----~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L 263 (622)
T 3g06_A 199 ----LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM---LPSGL 263 (622)
T ss_dssp ----CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTC
T ss_pred ----ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc---ccccC
Confidence 4578999999998754 3332 35789999999987765 44 466899999999999998887 67899
Q ss_pred cEEecccccCCCCCccccCCCcccceeecCCcccc-cccHHhh
Q 036017 226 KELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS-QLPSSIA 267 (283)
Q Consensus 226 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~ 267 (283)
+.|++++|... .+|..+..+++|+.|++++|.++ ..+..+.
T Consensus 264 ~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 264 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred cEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 99999998654 78888999999999999999998 4444443
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=7.1e-21 Score=154.30 Aligned_cols=202 Identities=15% Similarity=0.086 Sum_probs=151.3
Q ss_pred CCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccch-hhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEE
Q 036017 30 LDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLW-EEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERM 108 (283)
Q Consensus 30 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 108 (283)
+..++ ++++++++++.+..+|..+ .++++.|++++|.+..++ ..+..+++|+.|++++|.+ ..++..+.+++|++|
T Consensus 6 ~~~l~-~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVA-SHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVDGTLPVLGTL 82 (290)
T ss_dssp EECST-TCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECCSCCTTCCEE
T ss_pred ccccC-CccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccCCCCCCcCCEE
Confidence 45567 7888888888888777655 367888888888887653 4577788888888888773 344445778888888
Q ss_pred eeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCC
Q 036017 109 YLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSK 188 (283)
Q Consensus 109 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 188 (283)
++++|.. ..+|..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+
T Consensus 83 ~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 83 DLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALR-GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp ECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHc-CCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 8888654 45666677888888888888877653334454 788888888888876655555567788888888888777
Q ss_pred CCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCC
Q 036017 189 LESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKL 236 (283)
Q Consensus 189 ~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~ 236 (283)
....+..+..+++|+.|++++|.++.+|..+...+.|+.+++.+|+..
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 654445567788888888888888888888877888888888887654
No 76
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.7e-22 Score=167.45 Aligned_cols=242 Identities=17% Similarity=0.175 Sum_probs=181.8
Q ss_pred ceeEEeeccccCCCCCCCcccccCCcCCCc--ccCceEEEecCCCCCccC-CCCCCCcceEEecCCCCccc--chhhhhc
Q 036017 4 LRLLKFYLHNLRGDPIMSSKVHLDQGLDYL--PEELRYLHWHGYPLRTLP-TNLSTDKLVVLNLPCSNVEL--LWEEKKE 78 (283)
Q Consensus 4 L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~--~~~~l~~ 78 (283)
++.++++++.+. +..+..+ + +++.|+++++.+...+ ..+.+++|+.|++++|.+.. ++..+..
T Consensus 49 ~~~l~l~~~~~~-----------~~~~~~~~~~-~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~ 116 (336)
T 2ast_B 49 WQTLDLTGKNLH-----------PDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQ 116 (336)
T ss_dssp SSEEECTTCBCC-----------HHHHHHHHHT-TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTT
T ss_pred heeeccccccCC-----------HHHHHhhhhc-cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhh
Confidence 556666655433 2233444 6 8999999999875544 34489999999999998873 6677888
Q ss_pred cCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCC--cchhhccCCCCCcEEEecCC-CCcCC-ChhHhhcCCC-
Q 036017 79 AFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLP--FISSSIENLNNLSMLRLEGC-KILGP-FPAFISLSLT- 152 (283)
Q Consensus 79 ~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~- 152 (283)
+++|+.|++++|......+ .++.+++|++|++++|.... .++..+..+++|++|++++| .+.+. ++..+. .++
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~ 195 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA-HVSE 195 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH-HSCT
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH-hccc
Confidence 9999999999997543333 46789999999999984444 36667889999999999999 66543 455555 788
Q ss_pred ccCEEeccCCc--Cc-ccchhhhcCCCCCCeEeecCCC-CCCCCchhhhcCCCCcEEeecCCC-cc-ccchhhhcCCCcc
Q 036017 153 NLEVLDLAHCK--RL-NRLSASICKLKSLSWLRLYNCS-KLESFPGILENMARLEYIDLRLTA-IK-ELPSSVEHLEGLK 226 (283)
Q Consensus 153 ~L~~L~l~~~~--~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~-l~-~~~~~~~~~~~L~ 226 (283)
+|+.|++++|. +. ..++..+..+++|++|++++|. +....+..+..+++|++|++++|. +. .....+..+++|+
T Consensus 196 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 275 (336)
T 2ast_B 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 275 (336)
T ss_dssp TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCC
Confidence 99999999984 33 4456667789999999999998 555566778899999999999995 33 2223577899999
Q ss_pred EEecccccCCCCCccccCCC-cccceeecCCcccccc
Q 036017 227 ELRMEYCYKLSKLPDNLGSL-RSLKRLHTGKSAISQL 262 (283)
Q Consensus 227 ~L~l~~~~~~~~l~~~~~~l-~~L~~L~l~~~~i~~~ 262 (283)
.|++++| ... ..+..+ .+++.|++++|.++++
T Consensus 276 ~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 276 TLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTI 308 (336)
T ss_dssp EEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCT
T ss_pred EEeccCc-cCH---HHHHHHHhhCcceEEecccCccc
Confidence 9999998 221 122233 3477888999999844
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.4e-20 Score=151.16 Aligned_cols=201 Identities=17% Similarity=0.184 Sum_probs=162.8
Q ss_pred CcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEec
Q 036017 57 DKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLE 135 (283)
Q Consensus 57 ~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 135 (283)
...+.++++++.+..+|..+ .++++.|+++++......+ .+..+++|++|++++|......+..+..+++|++|+++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 45788999999999888654 3689999999998554433 58899999999999976554334456889999999999
Q ss_pred CCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcccc
Q 036017 136 GCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKEL 215 (283)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~ 215 (283)
+|.+....+..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++.+
T Consensus 94 ~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFD-QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCCCCCTTTTT-TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCcCCHhHcc-cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 9987653333444 889999999999887776666788999999999999887765555688899999999999999977
Q ss_pred chh-hhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc
Q 036017 216 PSS-VEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS 260 (283)
Q Consensus 216 ~~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~ 260 (283)
+.. +..+++|+.|++++|...+..+..+..+++|+.|++++|.+.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 664 678999999999998655544455788999999999999876
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=7e-21 Score=155.95 Aligned_cols=221 Identities=19% Similarity=0.168 Sum_probs=171.4
Q ss_pred CCCcceEEecCCCCccc--chh--hhhccCCccEEEccCCCCCCCCC-CC--CCCCCCcEEeeeCCCCCCcch----hhc
Q 036017 55 STDKLVVLNLPCSNVEL--LWE--EKKEAFKLKSVDLCNSQNLTRMP-DL--SETPNLERMYLLNCTNLPFIS----SSI 123 (283)
Q Consensus 55 ~~~~L~~l~l~~~~~~~--~~~--~l~~~~~L~~L~l~~~~~~~~~~-~~--~~~~~L~~L~l~~~~~~~~~~----~~~ 123 (283)
....++.+.+.++.+.. +.. ....+++|+.|++.+|......+ .+ ..+++|++|++++|......+ ..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 44567888888877652 211 13346789999999998766665 44 889999999999987665332 345
Q ss_pred cCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCccc--chh--hhcCCCCCCeEeecCCCCCCCCch----h
Q 036017 124 ENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNR--LSA--SICKLKSLSWLRLYNCSKLESFPG----I 195 (283)
Q Consensus 124 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~--~l~~~~~L~~L~l~~~~~~~~~~~----~ 195 (283)
..+++|++|++++|.+.+..+..+. .+++|+.|++++|++.+. .+. .++.+++|++|++++|.+.. ++. .
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l 219 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVR-AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAAL 219 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCC-CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhc-cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHH
Confidence 6899999999999998665555565 899999999999986542 222 23678999999999988753 332 3
Q ss_pred hhcCCCCcEEeecCCCcccc-chhhhcC---CCccEEecccccCCCCCccccCCCcccceeecCCcccccccHHhhccCC
Q 036017 196 LENMARLEYIDLRLTAIKEL-PSSVEHL---EGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPSSIADLKQ 271 (283)
Q Consensus 196 ~~~~~~L~~l~l~~~~l~~~-~~~~~~~---~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~ 271 (283)
+..+++|++|++++|.++.. |..+..+ ++|+.|++++|... .+|..+. ++|+.|++++|.++++|. ...+++
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~ 295 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPE 295 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhCCC
Confidence 56789999999999999965 6666665 69999999998655 6777654 799999999999998866 678899
Q ss_pred CCceeeccCC
Q 036017 272 VDGLSFYGCR 281 (283)
Q Consensus 272 L~~L~l~~c~ 281 (283)
|++|++++|+
T Consensus 296 L~~L~L~~N~ 305 (310)
T 4glp_A 296 VDNLTLDGNP 305 (310)
T ss_dssp CSCEECSSTT
T ss_pred ccEEECcCCC
Confidence 9999999885
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2e-20 Score=152.97 Aligned_cols=193 Identities=17% Similarity=0.215 Sum_probs=153.5
Q ss_pred CCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEee
Q 036017 31 DYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYL 110 (283)
Q Consensus 31 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 110 (283)
..++ +|++|+++++.+..++....+++|+.|++++|.+..++. +..+++|+.|++++|. ...++.+..+++|+.|++
T Consensus 38 ~~l~-~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 38 ADLD-GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDL 114 (308)
T ss_dssp HHHH-TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEEC
T ss_pred HHcC-CcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEEC
Confidence 3477 899999999988888755588999999999999888776 7888999999999887 445667888899999999
Q ss_pred eCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCC
Q 036017 111 LNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLE 190 (283)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 190 (283)
++|... .++ .+..+++|++|++++|.+.+ ++. +. .+++|+.|++++|.+... +. +..+++|++|++++|.+.+
T Consensus 115 ~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~~-~~~-l~-~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 115 TSTQIT-DVT-PLAGLSNLQVLYLDLNQITN-ISP-LA-GLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp TTSCCC-CCG-GGTTCTTCCEEECCSSCCCC-CGG-GG-GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCC-Cch-hhcCCCCCCEEECCCCccCc-Ccc-cc-CCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCc
Confidence 887654 343 37888999999999988755 444 44 788999999998875543 33 7788899999999877764
Q ss_pred CCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCC
Q 036017 191 SFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKL 236 (283)
Q Consensus 191 ~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~ 236 (283)
. +. +..+++|++|++++|.+..++. +..+++|+.|++++|+..
T Consensus 188 ~-~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 188 I-SP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp C-GG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred C-hh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeee
Confidence 3 33 7788899999999999887763 788899999999987654
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.8e-20 Score=151.94 Aligned_cols=199 Identities=19% Similarity=0.149 Sum_probs=158.5
Q ss_pred CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEE
Q 036017 55 STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLR 133 (283)
Q Consensus 55 ~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 133 (283)
++++++.++++++.+..+|..+ .++++.|++++|.+....+ .+..+++|+.|++++|... .++.. ..+++|++|+
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-SCCTTCCEEE
T ss_pred ccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-CCCCcCCEEE
Confidence 5788999999999999887655 3689999999988544433 5788999999999987643 33332 6888999999
Q ss_pred ecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcc
Q 036017 134 LEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIK 213 (283)
Q Consensus 134 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 213 (283)
+++|.+. .+|..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++
T Consensus 84 Ls~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp CCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 9998875 4666665 7889999999998876666667888899999999998877655566778889999999999999
Q ss_pred ccchh-hhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc
Q 036017 214 ELPSS-VEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS 260 (283)
Q Consensus 214 ~~~~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~ 260 (283)
.+|.. +..+++|+.|++++|.. +.+|..+...++|+.+++++|.+.
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l-~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccCHHHhcCcCCCCEEECCCCcC-CccChhhcccccCCeEEeCCCCcc
Confidence 87765 46788999999998654 567777778888999999988775
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.9e-20 Score=153.13 Aligned_cols=212 Identities=18% Similarity=0.207 Sum_probs=167.4
Q ss_pred EEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCc
Q 036017 39 YLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPF 118 (283)
Q Consensus 39 ~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 118 (283)
.+.+....+..+.....+++|+.|+++++.+..++ .+..+++|+.|++++|.. ..++.+..+++|+.|++++|... .
T Consensus 23 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i-~~~~~~~~l~~L~~L~L~~n~l~-~ 99 (308)
T 1h6u_A 23 KIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQI-TDLAPLKNLTKITELELSGNPLK-N 99 (308)
T ss_dssp HHHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC-CCCGGGTTCCSCCEEECCSCCCS-C
T ss_pred HHHhCCCCcCceecHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcC-CCChhHccCCCCCEEEccCCcCC-C
Confidence 33344444444333336889999999999998876 578899999999999974 44455889999999999998744 3
Q ss_pred chhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhc
Q 036017 119 ISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILEN 198 (283)
Q Consensus 119 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 198 (283)
.+ .+..+++|++|++++|.+.+ ++. +. .+++|+.|++++|.+....+ ++.+++|++|++++|.+.. ++. +..
T Consensus 100 ~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~ 171 (308)
T 1h6u_A 100 VS-AIAGLQSIKTLDLTSTQITD-VTP-LA-GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LAN 171 (308)
T ss_dssp CG-GGTTCTTCCEEECTTSCCCC-CGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTT
T ss_pred ch-hhcCCCCCCEEECCCCCCCC-chh-hc-CCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcC
Confidence 43 67889999999999998765 554 54 89999999999987654433 7789999999999987765 443 788
Q ss_pred CCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccccccH
Q 036017 199 MARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPS 264 (283)
Q Consensus 199 ~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~ 264 (283)
+++|+.|++++|.++.++. +..+++|+.|++++|...+ ++ .+..+++|+.|++++|.++..|.
T Consensus 172 l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred CCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCc-cc-cccCCCCCCEEEccCCeeecCCe
Confidence 9999999999999997765 7889999999999986544 44 37889999999999999886544
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=4.9e-23 Score=173.91 Aligned_cols=234 Identities=16% Similarity=0.162 Sum_probs=169.9
Q ss_pred CccCCCC-CCCcceEEecCCCCccc-----chhhhhccCCccEEEccCCCCCC---CCC-C-------CCCCCCCcEEee
Q 036017 48 RTLPTNL-STDKLVVLNLPCSNVEL-----LWEEKKEAFKLKSVDLCNSQNLT---RMP-D-------LSETPNLERMYL 110 (283)
Q Consensus 48 ~~~~~~~-~~~~L~~l~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~---~~~-~-------~~~~~~L~~L~l 110 (283)
..++..+ .+++|+.|++++|.+.. ++..+..+++|+.|++++|.... .++ . +..+++|++|++
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 3343333 67889999999998773 33446678899999998874221 122 1 367899999999
Q ss_pred eCCCCCC----cchhhccCCCCCcEEEecCCCCcCCChhHhhc---CC---------CccCEEeccCCcCc-ccch---h
Q 036017 111 LNCTNLP----FISSSIENLNNLSMLRLEGCKILGPFPAFISL---SL---------TNLEVLDLAHCKRL-NRLS---A 170 (283)
Q Consensus 111 ~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~---------~~L~~L~l~~~~~~-~~~~---~ 170 (283)
++|.... .++..+..+++|++|++++|.+....+..+.. .+ ++|+.|++++|.+. ..++ .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 9887665 36667788899999999998875332322221 23 78999999998765 2333 3
Q ss_pred hhcCCCCCCeEeecCCCCCCC-----CchhhhcCCCCcEEeecCCCcc-----ccchhhhcCCCccEEecccccCCCC--
Q 036017 171 SICKLKSLSWLRLYNCSKLES-----FPGILENMARLEYIDLRLTAIK-----ELPSSVEHLEGLKELRMEYCYKLSK-- 238 (283)
Q Consensus 171 ~l~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~l~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~~~-- 238 (283)
.+..+++|++|++++|.+... .+..+..+++|+.|++++|.++ .++..+..+++|+.|++++|.....
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 566788999999999877632 2226678889999999999884 5677788889999999999875532
Q ss_pred --Ccccc--CCCcccceeecCCccccc-----ccHHh-hccCCCCceeeccCC
Q 036017 239 --LPDNL--GSLRSLKRLHTGKSAISQ-----LPSSI-ADLKQVDGLSFYGCR 281 (283)
Q Consensus 239 --l~~~~--~~l~~L~~L~l~~~~i~~-----~~~~~-~~~~~L~~L~l~~c~ 281 (283)
++..+ ..+++|+.|++++|.++. ++..+ .++++|++|++++|+
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 44555 348889999999999885 77766 668999999998875
No 83
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=7.8e-22 Score=175.45 Aligned_cols=276 Identities=17% Similarity=0.125 Sum_probs=172.0
Q ss_pred CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCCC--------------------------
Q 036017 1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTNL-------------------------- 54 (283)
Q Consensus 1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------------------- 54 (283)
+++|++|+++++.+.+.. ...++..+..+| +|++|++++|.+..++..+
T Consensus 191 ~~~L~~L~L~~n~~~~~~----~~~l~~~~~~~~-~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKIS----PKDLETIARNCR-SLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp CCCCCEEECTTCCCSSCC----HHHHHHHHHHCT-TCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred CCCccEEEeeccCCCccC----HHHHHHHHhhCC-CCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence 356777777666654211 123333444556 6666666666543332222
Q ss_pred --CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC--CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCc
Q 036017 55 --STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP--DLSETPNLERMYLLNCTNLPFISSSIENLNNLS 130 (283)
Q Consensus 55 --~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 130 (283)
.+++|+.+++++.....++..+..+++|+.|++++|....... .+..+++|++|++.++.....++.....+++|+
T Consensus 266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCC
Confidence 4455666666555444555556677888888888876322211 246788888888874322223444456788888
Q ss_pred EEEecC----------C-CCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcC-CCCCCeEeecC---CCCCCC----
Q 036017 131 MLRLEG----------C-KILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICK-LKSLSWLRLYN---CSKLES---- 191 (283)
Q Consensus 131 ~L~l~~----------~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~---~~~~~~---- 191 (283)
+|++++ + .+.......+...+++|+.|++..+.+.......++. +++|++|++.+ |+..+.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 888883 3 3322112222226788899888666655544445544 88899999873 233332
Q ss_pred --CchhhhcCCCCcEEeecCCC--cc--ccchhhhcCCCccEEecccccCCC-CCccccCCCcccceeecCCcccc--cc
Q 036017 192 --FPGILENMARLEYIDLRLTA--IK--ELPSSVEHLEGLKELRMEYCYKLS-KLPDNLGSLRSLKRLHTGKSAIS--QL 262 (283)
Q Consensus 192 --~~~~~~~~~~L~~l~l~~~~--l~--~~~~~~~~~~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~i~--~~ 262 (283)
++..+..+++|+.|+++.|. ++ .+......+++|+.|++++|.... .++..+..+++|+.|++++|.++ .+
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 505 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI 505 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence 22346678899999997543 44 232333568889999999877543 34455677889999999999887 45
Q ss_pred cHHhhccCCCCceeeccCC
Q 036017 263 PSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 263 ~~~~~~~~~L~~L~l~~c~ 281 (283)
+.....+++|++|++++|+
T Consensus 506 ~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 506 AAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHCSSCCEEEEESCB
T ss_pred HHHHHhcCccCeeECcCCc
Confidence 6666788999999999885
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=6.2e-21 Score=150.45 Aligned_cols=208 Identities=13% Similarity=0.159 Sum_probs=118.6
Q ss_pred CCccCCCCCCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccC
Q 036017 47 LRTLPTNLSTDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIEN 125 (283)
Q Consensus 47 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 125 (283)
++.+|. + .++|+.|++++|.+..++. .+.++++|+.|++++|.....++ +..+..
T Consensus 23 l~~ip~-~-~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~----------------------~~~f~~ 78 (239)
T 2xwt_C 23 IQRIPS-L-PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE----------------------SHSFYN 78 (239)
T ss_dssp CSSCCC-C-CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC----------------------TTTEES
T ss_pred ccccCC-C-CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC----------------------HhHcCC
Confidence 444444 1 2355566666555555443 34445555555555543222222 123344
Q ss_pred CCCCcEEEecC-CCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCC---eEeecCC-CCCCCCchhhhcCC
Q 036017 126 LNNLSMLRLEG-CKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLS---WLRLYNC-SKLESFPGILENMA 200 (283)
Q Consensus 126 ~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~ 200 (283)
+++|++|++++ |.+....+..+. .+++|+.|++++|.+.. ++. +..+++|+ +|++++| .+....+..+..++
T Consensus 79 l~~L~~L~l~~~n~l~~i~~~~f~-~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~ 155 (239)
T 2xwt_C 79 LSKVTHIEIRNTRNLTYIDPDALK-ELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC 155 (239)
T ss_dssp CTTCCEEEEEEETTCCEECTTSEE-CCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB
T ss_pred CcCCcEEECCCCCCeeEcCHHHhC-CCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchh
Confidence 44555555544 433321112222 44555555555544322 222 44445555 6666666 33333334566777
Q ss_pred CCc-EEeecCCCccccchhhhcCCCccEEecccccCCCCC-ccccCCC-cccceeecCCcccccccHHhhccCCCCceee
Q 036017 201 RLE-YIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKL-PDNLGSL-RSLKRLHTGKSAISQLPSSIADLKQVDGLSF 277 (283)
Q Consensus 201 ~L~-~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l-~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l 277 (283)
+|+ .+++++|.++.+|......++|+.|++++|..++.+ +..+..+ ++|+.|++++|.++.+|.. .+++|+.|++
T Consensus 156 ~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l 233 (239)
T 2xwt_C 156 NETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIA 233 (239)
T ss_dssp SSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEEC
T ss_pred cceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeec
Confidence 888 888888888877766544478889999887544444 4557778 8999999999999888764 6788999999
Q ss_pred ccCCCC
Q 036017 278 YGCRGL 283 (283)
Q Consensus 278 ~~c~~l 283 (283)
.++..+
T Consensus 234 ~~~~~l 239 (239)
T 2xwt_C 234 RNTWTL 239 (239)
T ss_dssp TTC---
T ss_pred cCccCC
Confidence 887654
No 85
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=1.9e-21 Score=172.90 Aligned_cols=275 Identities=13% Similarity=0.008 Sum_probs=144.5
Q ss_pred CCCceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCc-----cCCCC-CCCcceEEecCCCCcccchh
Q 036017 1 MTNLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRT-----LPTNL-STDKLVVLNLPCSNVELLWE 74 (283)
Q Consensus 1 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~-~~~~L~~l~l~~~~~~~~~~ 74 (283)
|++|++|++++|.+.+.. ...++.....++ +|++|+++++.+.. ++..+ .+++|+.|+++++.+..++.
T Consensus 163 ~~~L~~L~L~~~~~~~~~----~~~l~~~~~~~~-~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~ 237 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKD----GKWLHELAQHNT-SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG 237 (592)
T ss_dssp CTTCSEEECTTCEEECCC----SHHHHHHHHHCC-CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHH
T ss_pred CCCCCEEECccccccCcc----hhHHHHHHhcCC-CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHH
Confidence 356666666666554310 000223344566 77777777766542 22222 56778888888777777776
Q ss_pred hhhccCCccEEEccCCCCCCC----CCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcC
Q 036017 75 EKKEAFKLKSVDLCNSQNLTR----MPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLS 150 (283)
Q Consensus 75 ~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 150 (283)
.+..+++|+.|++........ ...+..+++|+.+.++++ ....++..+..+++|++|++++|.+.......+...
T Consensus 238 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~ 316 (592)
T 3ogk_B 238 FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQK 316 (592)
T ss_dssp HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTT
T ss_pred HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHh
Confidence 677777777777764321111 113445555555555542 223344445555566666666555322111111124
Q ss_pred CCccCEEeccCCcCcccchhhhcC------------------------------------CCCCCeEeecCCCCCCCCch
Q 036017 151 LTNLEVLDLAHCKRLNRLSASICK------------------------------------LKSLSWLRLYNCSKLESFPG 194 (283)
Q Consensus 151 ~~~L~~L~l~~~~~~~~~~~~l~~------------------------------------~~~L~~L~l~~~~~~~~~~~ 194 (283)
+++|+.|++..+-....++..... +++|++|++..+.+.+....
T Consensus 317 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~ 396 (592)
T 3ogk_B 317 CPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE 396 (592)
T ss_dssp CTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHH
T ss_pred CcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHH
Confidence 555555555421111112222233 44555555533333322222
Q ss_pred hhhc-CCCCcEEeec----CCCccc------cchhhhcCCCccEEecccccC--CCCCccc-cCCCcccceeecCCcccc
Q 036017 195 ILEN-MARLEYIDLR----LTAIKE------LPSSVEHLEGLKELRMEYCYK--LSKLPDN-LGSLRSLKRLHTGKSAIS 260 (283)
Q Consensus 195 ~~~~-~~~L~~l~l~----~~~l~~------~~~~~~~~~~L~~L~l~~~~~--~~~l~~~-~~~l~~L~~L~l~~~~i~ 260 (283)
.+.. +++|+.|+++ .+.++. ++..+..+++|+.|+++.|.. ....+.. ...+++|+.|++++|.++
T Consensus 397 ~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 476 (592)
T 3ogk_B 397 SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES 476 (592)
T ss_dssp HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSS
T ss_pred HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCC
Confidence 2222 5556666664 334442 223345566677777655432 1111111 234778999999999887
Q ss_pred --cccHHhhccCCCCceeeccCC
Q 036017 261 --QLPSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 261 --~~~~~~~~~~~L~~L~l~~c~ 281 (283)
.++..+..+++|++|++++|+
T Consensus 477 ~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 477 DEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp HHHHHHHHTCCTTCCEEEEESCC
T ss_pred HHHHHHHHhcCcccCeeeccCCC
Confidence 456667889999999999986
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=1e-21 Score=164.38 Aligned_cols=245 Identities=15% Similarity=0.122 Sum_probs=179.0
Q ss_pred eEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCC-----CC-CCC-cceEEecCCCCcccc-hhhhh
Q 036017 6 LLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPT-----NL-STD-KLVVLNLPCSNVELL-WEEKK 77 (283)
Q Consensus 6 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-----~~-~~~-~L~~l~l~~~~~~~~-~~~l~ 77 (283)
++.++.+.++| .+|..+...+ +|++|++++|.++..+. .+ .++ +|+.|++++|.+... +..+.
T Consensus 2 ~~~ls~n~~~~--------~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 72 (362)
T 3goz_A 2 NYKLTLHPGSN--------PVEEFTSIPH-GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV 72 (362)
T ss_dssp EEECCCCTTCC--------HHHHHHTSCT-TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHH
T ss_pred ccccccccchH--------HHHHHHhCCC-CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHH
Confidence 35677777776 5566655555 79999999999877653 33 677 999999999999854 34444
Q ss_pred cc-----CCccEEEccCCCCCCCCCC-----CCCC-CCCcEEeeeCCCCCCcchhh----ccC-CCCCcEEEecCCCCcC
Q 036017 78 EA-----FKLKSVDLCNSQNLTRMPD-----LSET-PNLERMYLLNCTNLPFISSS----IEN-LNNLSMLRLEGCKILG 141 (283)
Q Consensus 78 ~~-----~~L~~L~l~~~~~~~~~~~-----~~~~-~~L~~L~l~~~~~~~~~~~~----~~~-~~~L~~L~l~~~~~~~ 141 (283)
.+ ++|+.|++++|......+. +..+ ++|++|++++|......+.. +.. ..+|++|++++|.+.+
T Consensus 73 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 73 QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 43 8999999999985544332 4445 89999999998765543333 344 3699999999998775
Q ss_pred CCh----hHhhcCCC-ccCEEeccCCcCcccchh----hhcCC-CCCCeEeecCCCCCCC----Cchhhhc-CCCCcEEe
Q 036017 142 PFP----AFISLSLT-NLEVLDLAHCKRLNRLSA----SICKL-KSLSWLRLYNCSKLES----FPGILEN-MARLEYID 206 (283)
Q Consensus 142 ~~~----~~~~~~~~-~L~~L~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~l~ 206 (283)
... ..+. .++ +|+.|++++|.+....+. .+..+ ++|++|++++|.+... ++..+.. .++|++|+
T Consensus 153 ~~~~~l~~~l~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~ 231 (362)
T 3goz_A 153 KSSDELIQILA-AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231 (362)
T ss_dssp SCHHHHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEE
T ss_pred HHHHHHHHHHh-cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEE
Confidence 433 3334 454 999999999987655443 34455 5999999999887653 3444545 45899999
Q ss_pred ecCCCcccc-----chhhhcCCCccEEecccccCC-------CCCccccCCCcccceeecCCcccc
Q 036017 207 LRLTAIKEL-----PSSVEHLEGLKELRMEYCYKL-------SKLPDNLGSLRSLKRLHTGKSAIS 260 (283)
Q Consensus 207 l~~~~l~~~-----~~~~~~~~~L~~L~l~~~~~~-------~~l~~~~~~l~~L~~L~l~~~~i~ 260 (283)
+++|.++.. ...+..+++|+.|++++|... ..++..+..+++|+.|++++|.+.
T Consensus 232 Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp CCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred CcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 999999843 233467899999999998722 234456778889999999999987
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=1.5e-21 Score=163.43 Aligned_cols=228 Identities=16% Similarity=0.143 Sum_probs=99.3
Q ss_pred CceeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCC-C-C-----CCcceEEecCCCCcccch-h
Q 036017 3 NLRLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTN-L-S-----TDKLVVLNLPCSNVELLW-E 74 (283)
Q Consensus 3 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~-~-----~~~L~~l~l~~~~~~~~~-~ 74 (283)
+|++|++++|.+++.. ...+...+..+|.+|++|++++|.++..... + . .++|+.|++++|.+.... .
T Consensus 23 ~L~~L~Ls~n~l~~~~----~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 23 GVTSLDLSLNNLYSIS----TVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TCCEEECTTSCGGGSC----HHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CceEEEccCCCCChHH----HHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 3555555555554311 0011133344443455666655555332211 1 1 155556666555555221 1
Q ss_pred ----hhhcc-CCccEEEccCCCCCCCCC-C----CCC-CCCCcEEeeeCCCCCCc----chhhccCCC-CCcEEEecCCC
Q 036017 75 ----EKKEA-FKLKSVDLCNSQNLTRMP-D----LSE-TPNLERMYLLNCTNLPF----ISSSIENLN-NLSMLRLEGCK 138 (283)
Q Consensus 75 ----~l~~~-~~L~~L~l~~~~~~~~~~-~----~~~-~~~L~~L~l~~~~~~~~----~~~~~~~~~-~L~~L~l~~~~ 138 (283)
.+..+ ++|+.|++++|....... . +.. ..+|++|++++|..... ++..+..++ +|++|++++|.
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 12223 555666665555322211 1 222 23555666555543321 222333333 55566665555
Q ss_pred CcCCChhHhh---cCC-CccCEEeccCCcCccc----chhhhcC-CCCCCeEeecCCCCCCCCc----hhhhcCCCCcEE
Q 036017 139 ILGPFPAFIS---LSL-TNLEVLDLAHCKRLNR----LSASICK-LKSLSWLRLYNCSKLESFP----GILENMARLEYI 205 (283)
Q Consensus 139 ~~~~~~~~~~---~~~-~~L~~L~l~~~~~~~~----~~~~l~~-~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~l 205 (283)
+.+..+..+. ..+ ++|+.|++++|.+... ++..+.. .++|++|++++|.+....+ ..+..+++|+.|
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L 258 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEE
Confidence 4433332111 023 3555666655543321 2223333 3355566665555444322 222344555566
Q ss_pred eecCCCcc--------ccchhhhcCCCccEEeccccc
Q 036017 206 DLRLTAIK--------ELPSSVEHLEGLKELRMEYCY 234 (283)
Q Consensus 206 ~l~~~~l~--------~~~~~~~~~~~L~~L~l~~~~ 234 (283)
++++|.+. .++..+..+++|+.|++++|.
T Consensus 259 ~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp EEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred EeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 65555522 122233445555555555554
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=4.9e-21 Score=156.86 Aligned_cols=220 Identities=15% Similarity=0.108 Sum_probs=169.6
Q ss_pred CceEEEecCCCCCc-----cCCCCCCCcceEEecCCCCccc-chhhh--hccCCccEEEccCCCCCCCCC-----CCCCC
Q 036017 36 ELRYLHWHGYPLRT-----LPTNLSTDKLVVLNLPCSNVEL-LWEEK--KEAFKLKSVDLCNSQNLTRMP-----DLSET 102 (283)
Q Consensus 36 ~L~~L~l~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~-~~~~l--~~~~~L~~L~l~~~~~~~~~~-----~~~~~ 102 (283)
.++.+.+.++.+.. +.....+++|++|++++|.+.. .+..+ ..+++|+.|++++|.+....+ .+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 47888888877632 1122245779999999999884 44455 778999999999998665443 23568
Q ss_pred CCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCC--Ch--hHhhcCCCccCEEeccCCcCcccchh----hhcC
Q 036017 103 PNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGP--FP--AFISLSLTNLEVLDLAHCKRLNRLSA----SICK 174 (283)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~--~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~ 174 (283)
++|++|++++|......+..+..+++|++|++++|.+.+. ++ ..+. .+++|+.|++++|.+. .++. .++.
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~-~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH-KFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT-SSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh-cCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 9999999999887666667788999999999999986542 11 1123 7889999999998764 2222 2467
Q ss_pred CCCCCeEeecCCCCCCCCchhhhcC---CCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCcccce
Q 036017 175 LKSLSWLRLYNCSKLESFPGILENM---ARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKR 251 (283)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 251 (283)
+++|++|++++|.+.+..|..+..+ ++|++|++++|.++.+|..+. ++|+.|++++|...+ +|. +..+++|+.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~ 298 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVDN 298 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCccE
Confidence 8999999999999887766666665 699999999999998887654 899999999986554 443 678899999
Q ss_pred eecCCccccc
Q 036017 252 LHTGKSAISQ 261 (283)
Q Consensus 252 L~l~~~~i~~ 261 (283)
|++++|.++.
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999998863
No 89
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=7.7e-19 Score=157.18 Aligned_cols=226 Identities=18% Similarity=0.224 Sum_probs=175.6
Q ss_pred cccCceEEEecCCCCCccCCCCCCCcceEEecCCCCccc---chhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEe
Q 036017 33 LPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVEL---LWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMY 109 (283)
Q Consensus 33 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 109 (283)
++ .++.+.+.++..........++.|+.++++.|.+.. .+.....+.+++.+++..+........+..+++|+.++
T Consensus 348 l~-~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~ 426 (635)
T 4g8a_A 348 LK-SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLD 426 (635)
T ss_dssp CT-TCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEE
T ss_pred ch-hhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchh
Confidence 45 777788877776665555578899999999887763 34455677889999988877554455677889999999
Q ss_pred eeCCCCCCcc-hhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcc-cchhhhcCCCCCCeEeecCCC
Q 036017 110 LLNCTNLPFI-SSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLN-RLSASICKLKSLSWLRLYNCS 187 (283)
Q Consensus 110 l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~ 187 (283)
+..+...... ...+..+++++.++++.|.+....+..+. .+++++.|++++|.... ..+..+..+++|++|++++|.
T Consensus 427 l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~-~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~ 505 (635)
T 4g8a_A 427 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 505 (635)
T ss_dssp CTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred hhhccccccccccccccccccccccccccccccccccccc-cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc
Confidence 8876544332 23467788999999999887665555555 78899999999886544 455667888999999999988
Q ss_pred CCCCCchhhhcCCCCcEEeecCCCccccch-hhhcCCCccEEecccccCCCCCccccCCC-cccceeecCCcccc
Q 036017 188 KLESFPGILENMARLEYIDLRLTAIKELPS-SVEHLEGLKELRMEYCYKLSKLPDNLGSL-RSLKRLHTGKSAIS 260 (283)
Q Consensus 188 ~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~~~~l-~~L~~L~l~~~~i~ 260 (283)
+.+..+..+.++++|++|++++|.++.++. .+..+++|+.|++++|...+..+..+..+ ++|+.|++++|.++
T Consensus 506 L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 506 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred cCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 887777888899999999999999986654 57889999999999988777777778777 58999999988776
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=4.8e-19 Score=139.58 Aligned_cols=195 Identities=18% Similarity=0.192 Sum_probs=152.2
Q ss_pred cccCceEEEecCCCCCccCC-CC-CCCcceEEecCCCC-cccchh-hhhccCCccEEEccC-CCCCCCCC-CCCCCCCCc
Q 036017 33 LPEELRYLHWHGYPLRTLPT-NL-STDKLVVLNLPCSN-VELLWE-EKKEAFKLKSVDLCN-SQNLTRMP-DLSETPNLE 106 (283)
Q Consensus 33 ~~~~L~~L~l~~~~~~~~~~-~~-~~~~L~~l~l~~~~-~~~~~~-~l~~~~~L~~L~l~~-~~~~~~~~-~~~~~~~L~ 106 (283)
+|.++++|+++++.+..++. .+ ++++|+.|++++|. ++.++. .+.++++|+.|++++ +......+ .+..+++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 44489999999999988876 33 89999999999997 887765 577899999999998 66443332 477899999
Q ss_pred EEeeeCCCCCCcchhhccCCCCCc---EEEecCC-CCcCCChhH-hhcCCCccC-EEeccCCcCcccchhhhcCCCCCCe
Q 036017 107 RMYLLNCTNLPFISSSIENLNNLS---MLRLEGC-KILGPFPAF-ISLSLTNLE-VLDLAHCKRLNRLSASICKLKSLSW 180 (283)
Q Consensus 107 ~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~-~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~ 180 (283)
+|++++|... .+|. +..+++|+ +|++++| .+.+ ++.. +. .+++|+ .|++++|.+. .++......++|++
T Consensus 109 ~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~-i~~~~~~-~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~ 183 (239)
T 2xwt_C 109 FLGIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTS-IPVNAFQ-GLCNETLTLKLYNNGFT-SVQGYAFNGTKLDA 183 (239)
T ss_dssp EEEEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCE-ECTTTTT-TTBSSEEEEECCSCCCC-EECTTTTTTCEEEE
T ss_pred EEeCCCCCCc-cccc-cccccccccccEEECCCCcchhh-cCccccc-chhcceeEEEcCCCCCc-ccCHhhcCCCCCCE
Confidence 9999987654 3554 77788887 9999999 6654 4443 44 889999 9999998866 44443333389999
Q ss_pred EeecCCC-CCCCCchhhhcC-CCCcEEeecCCCccccchhhhcCCCccEEeccccc
Q 036017 181 LRLYNCS-KLESFPGILENM-ARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCY 234 (283)
Q Consensus 181 L~l~~~~-~~~~~~~~~~~~-~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~ 234 (283)
|++++|. +....+..+..+ ++|+.+++++|.++.+|.. .+++|+.|++.++.
T Consensus 184 L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp EECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred EEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 9999985 554444667888 9999999999999988765 78899999998764
No 91
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=5.3e-21 Score=170.13 Aligned_cols=107 Identities=14% Similarity=0.181 Sum_probs=64.6
Q ss_pred CCCCCCeEeec-----CCCCCCCC------chhhhcCCCCcEEeecCCCcc-ccchhhh-cCCCccEEecccccCCCCCc
Q 036017 174 KLKSLSWLRLY-----NCSKLESF------PGILENMARLEYIDLRLTAIK-ELPSSVE-HLEGLKELRMEYCYKLSKLP 240 (283)
Q Consensus 174 ~~~~L~~L~l~-----~~~~~~~~------~~~~~~~~~L~~l~l~~~~l~-~~~~~~~-~~~~L~~L~l~~~~~~~~l~ 240 (283)
.+++|+.|++. +|...+.. +..+..+++|+.|++++ .++ ..+..+. .+++|+.|++++|.......
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~ 473 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence 46677777776 23333221 12245667777777765 444 2222333 37778888888776433222
Q ss_pred ccc-CCCcccceeecCCcccc--cccHHhhccCCCCceeeccCC
Q 036017 241 DNL-GSLRSLKRLHTGKSAIS--QLPSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 241 ~~~-~~l~~L~~L~l~~~~i~--~~~~~~~~~~~L~~L~l~~c~ 281 (283)
..+ ..+++|+.|++++|.++ .+......+++|++|++++|+
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 222 45788888888888886 233345568888888888886
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=2.3e-18 Score=136.72 Aligned_cols=178 Identities=15% Similarity=0.120 Sum_probs=139.2
Q ss_pred CcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEec
Q 036017 57 DKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLE 135 (283)
Q Consensus 57 ~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 135 (283)
+..+.++++++.+..+|..+. ++++.|+++++......+ .+..+++|++|++++|......+..+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 456788999999988886553 689999999988655544 57889999999999887666556667888999999999
Q ss_pred CCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcccc
Q 036017 136 GCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKEL 215 (283)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~ 215 (283)
+|.+.+..+..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++.+
T Consensus 92 ~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFD-HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhc-ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 9887653334444 788999999999876655555567888999999998877765555678888899999999988866
Q ss_pred ch-hhhcCCCccEEecccccCCC
Q 036017 216 PS-SVEHLEGLKELRMEYCYKLS 237 (283)
Q Consensus 216 ~~-~~~~~~~L~~L~l~~~~~~~ 237 (283)
+. .+..+++|+.|++++|+...
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCT
T ss_pred CHHHHhCCCCCCEEEeeCCceeC
Confidence 65 46788889999998877654
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=1.9e-18 Score=137.11 Aligned_cols=176 Identities=19% Similarity=0.196 Sum_probs=146.8
Q ss_pred CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCC
Q 036017 36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNC 113 (283)
Q Consensus 36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~ 113 (283)
..++++++++.+..+|.... +.++.|++++|.+..++. .+.++++|+.|++++|.+....+ .+..+++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 67889999999998887653 789999999999987654 57889999999999998655444 4788999999999998
Q ss_pred CCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCc
Q 036017 114 TNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFP 193 (283)
Q Consensus 114 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 193 (283)
......+..+..+++|++|++++|.+.+ ++......+++|+.|++++|.+....+..++.+++|++|++++|.+....+
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCC-cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 7665555667899999999999998765 444432279999999999998766666578899999999999998887666
Q ss_pred hhhhcCCCCcEEeecCCCcc
Q 036017 194 GILENMARLEYIDLRLTAIK 213 (283)
Q Consensus 194 ~~~~~~~~L~~l~l~~~~l~ 213 (283)
..+..+++|+.+++++|.+.
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBC
T ss_pred HHHhCCCCCCEEEeeCCcee
Confidence 67889999999999999887
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=2.8e-18 Score=142.81 Aligned_cols=236 Identities=19% Similarity=0.207 Sum_probs=170.8
Q ss_pred eeEEeeccccCCCCCCCcccccCCcCCCcccCceEEEecCCCCCccCCC-C-CCCcceEEecCCCCcc-cchh-hhhccC
Q 036017 5 RLLKFYLHNLRGDPIMSSKVHLDQGLDYLPEELRYLHWHGYPLRTLPTN-L-STDKLVVLNLPCSNVE-LLWE-EKKEAF 80 (283)
Q Consensus 5 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~-~~~~L~~l~l~~~~~~-~~~~-~l~~~~ 80 (283)
+.++.++++++ .+|..+ |.++++|+++++.++.++.. + ++++|+.|++++|.+. .++. .+.+++
T Consensus 12 ~~v~C~~~~Lt---------~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~ 79 (350)
T 4ay9_X 12 RVFLCQESKVT---------EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 79 (350)
T ss_dssp TEEEEESTTCC---------SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCT
T ss_pred CEEEecCCCCC---------ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcch
Confidence 34555555555 456544 44899999999999999864 4 8999999999999875 4543 456788
Q ss_pred CccEEEc-cCCCCCCCC-C-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhH-hhcCCCccCE
Q 036017 81 KLKSVDL-CNSQNLTRM-P-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAF-ISLSLTNLEV 156 (283)
Q Consensus 81 ~L~~L~l-~~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~ 156 (283)
+++.+.. ..+. ...+ + .+..+++|+.|++++|......+..+....++..+++.++.....++.. +......++.
T Consensus 80 ~l~~~l~~~~N~-l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~ 158 (350)
T 4ay9_X 80 KLHEIRIEKANN-LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158 (350)
T ss_dssp TCCEEEEEEETT-CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEE
T ss_pred hhhhhhcccCCc-ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhh
Confidence 8776544 4455 4444 3 5788999999999987654433334445567778888765433334433 2212346889
Q ss_pred EeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCc-hhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccC
Q 036017 157 LDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFP-GILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYK 235 (283)
Q Consensus 157 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 235 (283)
|++++|.+. .++.......+++++++.+++..+.++ ..+..+++|+.|++++|.++.+|.. .+.+|+.|.+.++..
T Consensus 159 L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 159 LWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYN 235 (350)
T ss_dssp EECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTT
T ss_pred hcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCC
Confidence 999998754 444444456789999998877777776 4678999999999999999988864 467888888888888
Q ss_pred CCCCccccCCCcccceeecCCc
Q 036017 236 LSKLPDNLGSLRSLKRLHTGKS 257 (283)
Q Consensus 236 ~~~l~~~~~~l~~L~~L~l~~~ 257 (283)
.+.+|. +..+++|+.++++++
T Consensus 236 l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 236 LKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp CCCCCC-TTTCCSCCEEECSCH
T ss_pred cCcCCC-chhCcChhhCcCCCC
Confidence 888874 788899999998763
No 95
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=2.7e-20 Score=165.57 Aligned_cols=62 Identities=18% Similarity=0.281 Sum_probs=36.9
Q ss_pred hhcCCCccEEecccccCCCCCccccC-CCcccceeecCCcccc--cccHHhhccCCCCceeeccCC
Q 036017 219 VEHLEGLKELRMEYCYKLSKLPDNLG-SLRSLKRLHTGKSAIS--QLPSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 219 ~~~~~~L~~L~l~~~~~~~~l~~~~~-~l~~L~~L~l~~~~i~--~~~~~~~~~~~L~~L~l~~c~ 281 (283)
+..+++|+.|++++ .........+. .+++|+.|++++|.++ .+......+++|++|++++|+
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 44555666666644 11111112222 2677888888888876 333333678889999998886
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.7e-17 Score=134.52 Aligned_cols=190 Identities=18% Similarity=0.145 Sum_probs=143.2
Q ss_pred CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCC
Q 036017 36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTN 115 (283)
Q Consensus 36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 115 (283)
++..+.+....+..+.....+++|+.++++++.+..++. +..+++|+.|++++|... .++.+..+++|+.|++++|..
T Consensus 25 ~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~-~~~~l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLT-DIKPLANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSCC
T ss_pred HHHHHHhcCCCcccccchhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccC-CCcccccCCCCCEEECCCCcC
Confidence 344444555555444333368889999999998887754 778899999999988744 444588899999999998764
Q ss_pred CCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchh
Q 036017 116 LPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGI 195 (283)
Q Consensus 116 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 195 (283)
. ..+ .+..+++|++|++++|.+.+ ++ .+. .+++|+.|++++|.+... ..+..+++|++|++++|.+.+.. .
T Consensus 103 ~-~~~-~l~~l~~L~~L~L~~n~i~~-~~-~l~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~-~- 173 (291)
T 1h6t_A 103 K-DLS-SLKDLKKLKSLSLEHNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV-P- 173 (291)
T ss_dssp C-CGG-GGTTCTTCCEEECTTSCCCC-CG-GGG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG-G-
T ss_pred C-CCh-hhccCCCCCEEECCCCcCCC-Ch-hhc-CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch-h-
Confidence 3 333 47888999999999988755 43 344 788999999998876543 46778889999999988776543 3
Q ss_pred hhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCC
Q 036017 196 LENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLS 237 (283)
Q Consensus 196 ~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~ 237 (283)
+..+++|+.|++++|.++.++. +..+++|+.|++++|+...
T Consensus 174 l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccC
Confidence 7788899999999998888764 7888899999999876543
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=1.6e-17 Score=134.68 Aligned_cols=174 Identities=17% Similarity=0.167 Sum_probs=142.6
Q ss_pred CCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEee
Q 036017 31 DYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYL 110 (283)
Q Consensus 31 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 110 (283)
..++ +|++|+++++.+..++....+++|+.|++++|.+..++. +..+++|+.|++++|. ...++.+..+++|+.|++
T Consensus 43 ~~l~-~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELN-SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSL 119 (291)
T ss_dssp HHHH-TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEEC
T ss_pred hhcC-cccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEEC
Confidence 4577 999999999999888765589999999999999998776 8889999999999987 445667889999999999
Q ss_pred eCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCC
Q 036017 111 LNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLE 190 (283)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 190 (283)
++|.... + ..+..+++|+.|++++|.+.+ + ..+. .+++|+.|++++|.+....+ +..+++|++|++++|.+..
T Consensus 120 ~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~-~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 120 EHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp TTSCCCC-C-GGGGGCTTCCEEECCSSCCCC-C-GGGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCCcCCC-C-hhhcCCCCCCEEEccCCcCCc-c-hhhc-cCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 9876543 3 457889999999999998765 4 4454 88999999999987655443 7889999999999987764
Q ss_pred CCchhhhcCCCCcEEeecCCCccccc
Q 036017 191 SFPGILENMARLEYIDLRLTAIKELP 216 (283)
Q Consensus 191 ~~~~~~~~~~~L~~l~l~~~~l~~~~ 216 (283)
++ .+..+++|+.|++++|.+...+
T Consensus 193 -l~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 193 -LR-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp -CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred -Ch-hhccCCCCCEEECcCCcccCCc
Confidence 44 4788999999999999887443
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=4.9e-18 Score=141.35 Aligned_cols=235 Identities=18% Similarity=0.240 Sum_probs=168.6
Q ss_pred eEEEecCCCCCccCCCCCCCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCC--CCCCCCCCcEEee-eCC
Q 036017 38 RYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMP--DLSETPNLERMYL-LNC 113 (283)
Q Consensus 38 ~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l-~~~ 113 (283)
++++.++.+++.+|..+ .++++.|++++|.++.++. .+.++++|+.|++++|.+...++ .|..+++++++.. ..+
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 46777888888888765 4689999999999999885 57889999999999998766655 4788888887554 444
Q ss_pred CCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchh-hhcCC-CCCCeEeecCCCCCCC
Q 036017 114 TNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSA-SICKL-KSLSWLRLYNCSKLES 191 (283)
Q Consensus 114 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~-~~L~~L~l~~~~~~~~ 191 (283)
......+..+..+++|++|++++|.+.. ++........++..+++.++.....++. .+..+ ..++.|++++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~- 168 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE- 168 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-
T ss_pred cccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-
Confidence 4433345668899999999999998765 4433221556778888876544444433 34444 468889999977764
Q ss_pred CchhhhcCCCCcEEeecC-CCccccchh-hhcCCCccEEecccccCCCCCccccCCCcccceeecCC-cccccccHHhhc
Q 036017 192 FPGILENMARLEYIDLRL-TAIKELPSS-VEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGK-SAISQLPSSIAD 268 (283)
Q Consensus 192 ~~~~~~~~~~L~~l~l~~-~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~-~~i~~~~~~~~~ 268 (283)
++.......+|+.+++.+ |.++.+|.. +..+++|+.|++++|. ++.+|.. .+.+|+.|.+.+ +.++.+|. +..
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~ 244 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSY--GLENLKKLRARSTYNLKKLPT-LEK 244 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSS--SCTTCCEEECTTCTTCCCCCC-TTT
T ss_pred CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChh--hhccchHhhhccCCCcCcCCC-chh
Confidence 444344556789999975 778888865 5889999999999975 4555542 244555555444 45677774 678
Q ss_pred cCCCCceeecc
Q 036017 269 LKQVDGLSFYG 279 (283)
Q Consensus 269 ~~~L~~L~l~~ 279 (283)
+++|+.+++.+
T Consensus 245 l~~L~~l~l~~ 255 (350)
T 4ay9_X 245 LVALMEASLTY 255 (350)
T ss_dssp CCSCCEEECSC
T ss_pred CcChhhCcCCC
Confidence 89999988754
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=1.3e-17 Score=127.45 Aligned_cols=151 Identities=18% Similarity=0.262 Sum_probs=82.3
Q ss_pred ccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEE
Q 036017 78 EAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVL 157 (283)
Q Consensus 78 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 157 (283)
.+++|+.|+++++.+. .++.+..+++|++|++++|.. ... ..+..+++|++|++++|.+.+..+..+. .+++|+.|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n~~-~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHA-TNY-NPISGLSNLERLRIMGKDVTSDKIPNLS-GLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCTTGGGCTTCSEEEEESCCC-SCC-GGGTTCTTCCEEEEECTTCBGGGSCCCT-TCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChHHHhcCCCCCEEEccCCCC-Ccc-hhhhcCCCCCEEEeECCccCcccChhhc-CCCCCCEE
Confidence 3445555555554422 333445555555555555421 222 2445555666666665555443334444 55666666
Q ss_pred eccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEeccccc
Q 036017 158 DLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCY 234 (283)
Q Consensus 158 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~ 234 (283)
++++|.+....+..++.+++|++|++++|...+.++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 666665554445555666666666666655333443 4566666666666666666554 55666667777776654
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=2.2e-17 Score=126.19 Aligned_cols=153 Identities=20% Similarity=0.260 Sum_probs=77.1
Q ss_pred CCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCC
Q 036017 100 SETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLS 179 (283)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 179 (283)
..+++|+.|+++++... .++ .+..+++|++|++++|.+.. ++ .+. .+++|+.|++++|.+....+..++.+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~-~~-~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN-YN-PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC-CG-GGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc-ch-hhh-cCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 34455555555554332 333 34555555566555553321 22 333 455555665555554443444455555566
Q ss_pred eEeecCCCCCCCCchhhhcCCCCcEEeecCCC-ccccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcc
Q 036017 180 WLRLYNCSKLESFPGILENMARLEYIDLRLTA-IKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSA 258 (283)
Q Consensus 180 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 258 (283)
+|++++|.+.+..+..+..+++|++|++++|. ++.++ .+..+++|+.|++++|... .++ .+..+++|+.|++++|.
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCCEEEECBC-
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-ChH-HhccCCCCCEEEeeCcc
Confidence 66655555554444455555555666665555 44444 3555555566665554432 232 34455555555555555
Q ss_pred cc
Q 036017 259 IS 260 (283)
Q Consensus 259 i~ 260 (283)
|.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 43
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=2.9e-17 Score=144.04 Aligned_cols=184 Identities=21% Similarity=0.258 Sum_probs=107.8
Q ss_pred CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCC
Q 036017 36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTN 115 (283)
Q Consensus 36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 115 (283)
+++.|+++++.+..+|... .++|+.|++++|.+..++ ..+++|+.|++++|.+.. ++.+.. +|+.|++++|..
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPELPA--SLKHLDVDNNQL 132 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCCCCT--TCCEEECCSSCC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cchhhc--CCCEEECCCCcC
Confidence 5667777776666665543 356777777777666665 335667777776665333 444332 666777766543
Q ss_pred CCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchh
Q 036017 116 LPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGI 195 (283)
Q Consensus 116 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 195 (283)
.. +|. .+++|+.|++++|.+.+ +|. .+++|+.|++++|.+.. +|. +. ++|+.|++++|.+. .+|.
T Consensus 133 ~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~- 197 (571)
T 3cvr_A 133 TM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA- 197 (571)
T ss_dssp SC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-
T ss_pred CC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-
Confidence 32 443 45666777777666543 443 34566777776665443 333 33 66667777666555 3443
Q ss_pred hhcCCCC-------cEEeecCCCccccchhhhcCCCccEEecccccCCCCCcccc
Q 036017 196 LENMARL-------EYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNL 243 (283)
Q Consensus 196 ~~~~~~L-------~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~ 243 (283)
+.. +| +.|++++|.++.+|..+..+++|+.|++++|...+..|..+
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 322 45 67777777777666666666777777777766555444443
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=6.3e-18 Score=149.66 Aligned_cols=173 Identities=16% Similarity=0.156 Sum_probs=114.5
Q ss_pred CCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEee
Q 036017 31 DYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYL 110 (283)
Q Consensus 31 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 110 (283)
..++ +|+.|+++++.+..++....+++|+.|++++|.+..++. +..+++|+.|++++|. +..++.+..+++|+.|++
T Consensus 40 ~~L~-~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 40 NELN-SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSL 116 (605)
T ss_dssp HHHT-TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEEC
T ss_pred hcCC-CCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEe
Confidence 3456 777778877777777655577788888888777776655 6677778888877776 344556777777777777
Q ss_pred eCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCC
Q 036017 111 LNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLE 190 (283)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 190 (283)
++|.... + ..+..+++|+.|++++|.+.+ + ..+. .+++|+.|++++|.+....+ +..+++|++|++++|.+..
T Consensus 117 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 117 EHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp TTSCCCC-C-GGGGGCTTCSEEECCSSCCCC-C-GGGG-SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred cCCCCCC-C-ccccCCCccCEEECCCCccCC-c-hhhc-ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 7765433 2 346677777777777776554 3 3343 66777777777766544433 5667777777777765544
Q ss_pred CCchhhhcCCCCcEEeecCCCcccc
Q 036017 191 SFPGILENMARLEYIDLRLTAIKEL 215 (283)
Q Consensus 191 ~~~~~~~~~~~L~~l~l~~~~l~~~ 215 (283)
+ +.+..+++|+.|++++|.+...
T Consensus 190 -l-~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 190 -L-RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp -C-GGGTTCTTCSEEECCSEEEECC
T ss_pred -C-hHHccCCCCCEEEccCCcCcCC
Confidence 2 3456667777777777666543
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=6.3e-17 Score=143.29 Aligned_cols=190 Identities=19% Similarity=0.167 Sum_probs=132.2
Q ss_pred CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCC
Q 036017 36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTN 115 (283)
Q Consensus 36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 115 (283)
.+..+.+....+..+.....+++|+.|+++++.+..++ .+..+++|+.|++++|.+ ..++.+..+++|+.|++++|..
T Consensus 22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l-~~~~~l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKL-TDIKPLTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred HHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCC-CCChhhccCCCCCEEECcCCCC
Confidence 44445555555544444346778888888888877765 367788888888888763 3344477788888888887654
Q ss_pred CCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchh
Q 036017 116 LPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGI 195 (283)
Q Consensus 116 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 195 (283)
. .++ .+..+++|+.|++++|.+.+ ++ .+. .+++|+.|++++|.+... ..+..+++|+.|++++|.+....+
T Consensus 100 ~-~l~-~l~~l~~L~~L~Ls~N~l~~-l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-- 170 (605)
T 1m9s_A 100 K-DLS-SLKDLKKLKSLSLEHNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-- 170 (605)
T ss_dssp C-CCT-TSTTCTTCCEEECTTSCCCC-CG-GGG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--
T ss_pred C-CCh-hhccCCCCCEEEecCCCCCC-Cc-ccc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--
Confidence 3 333 56777888888888887654 43 344 678888888888765443 456778888888888877665433
Q ss_pred hhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCC
Q 036017 196 LENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLS 237 (283)
Q Consensus 196 ~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~ 237 (283)
+..+++|+.|++++|.++.++ .+..+++|+.|++++|+...
T Consensus 171 l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcC
Confidence 777888888888888887764 46778888888888876544
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.74 E-value=7.1e-17 Score=124.41 Aligned_cols=51 Identities=16% Similarity=0.170 Sum_probs=20.6
Q ss_pred EEecCCCCCccCCCCCCCcceEEecCCCCcccchhh-hhccCCccEEEccCCC
Q 036017 40 LHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEE-KKEAFKLKSVDLCNSQ 91 (283)
Q Consensus 40 L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~ 91 (283)
++..++.+..+|... .++|+.|+++++.+..++.. +..+++|+.|++++|.
T Consensus 12 v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 63 (208)
T 2o6s_A 12 VECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK 63 (208)
T ss_dssp EECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred EEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc
Confidence 333444443433222 23444444444444433321 2334444444444443
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=5.3e-17 Score=142.43 Aligned_cols=186 Identities=17% Similarity=0.213 Sum_probs=145.4
Q ss_pred cceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCC
Q 036017 58 KLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGC 137 (283)
Q Consensus 58 ~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 137 (283)
+++.|+++++.+..+|..+ +++|+.|++++|.+. .++ ..+++|+.|++++|.+.. +|. +.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCC
Confidence 8999999999998887755 478999999998744 566 568999999999976544 655 443 8999999999
Q ss_pred CCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccch
Q 036017 138 KILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPS 217 (283)
Q Consensus 138 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~ 217 (283)
.+.+ +|. .+++|+.|++++|.+.. ++. .+++|++|++++|.+.+ +|. +. ++|+.|++++|.++.+|.
T Consensus 131 ~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 131 QLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp CCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC
T ss_pred cCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh
Confidence 8765 555 57899999999987654 443 57899999999988766 655 44 889999999999998887
Q ss_pred hhhcCCCc-------cEEecccccCCCCCccccCCCcccceeecCCcccc-cccHHhhcc
Q 036017 218 SVEHLEGL-------KELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS-QLPSSIADL 269 (283)
Q Consensus 218 ~~~~~~~L-------~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~~ 269 (283)
+.. +| +.|++++|. ++.+|..+..+++|+.|++++|.++ .+|..+..+
T Consensus 198 -~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 198 -VPV--RNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp -CC----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred -HHH--hhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 443 67 999999975 4568887888999999999999997 556665543
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.73 E-value=9.6e-17 Score=123.66 Aligned_cols=176 Identities=17% Similarity=0.140 Sum_probs=85.7
Q ss_pred eEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCC
Q 036017 60 VVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCK 138 (283)
Q Consensus 60 ~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 138 (283)
+.++.+++.+..++..+ .++++.|+++++......+ .+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 34555555555555333 3466666666665332222 24556666666666654432222334555566666666655
Q ss_pred CcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchh
Q 036017 139 ILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSS 218 (283)
Q Consensus 139 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~ 218 (283)
+.+..+..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.+++++|.+.
T Consensus 88 l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 88 LQSLPNGVFD-KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred CCccCHhHhc-CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----
Confidence 4432222222 5555666666555544333333445555555555555444333233444555555555555332
Q ss_pred hhcCCCccEEecccccCCCCCccccC
Q 036017 219 VEHLEGLKELRMEYCYKLSKLPDNLG 244 (283)
Q Consensus 219 ~~~~~~L~~L~l~~~~~~~~l~~~~~ 244 (283)
+.+++|+.|++..|...+.+|+.++
T Consensus 162 -~~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 162 -CTCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp -CCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred -cCCCCHHHHHHHHHhCCceeeccCc
Confidence 2233444455544444444444443
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=4.4e-16 Score=120.97 Aligned_cols=151 Identities=19% Similarity=0.206 Sum_probs=111.6
Q ss_pred cEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecC
Q 036017 106 ERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYN 185 (283)
Q Consensus 106 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 185 (283)
+.++.+++. ...+|..+. ++++.|++++|.+....+..+. .+++|+.|++++|.+....+..+..+++|++|++++
T Consensus 14 ~~v~c~~~~-l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~-~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFS-PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSC-CSSCCSSCC--TTCCEEECCSSCCCEECTTSST-TCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCC-cCcCCCccC--cCCCEEECCCCcCCCcCHhHhh-CCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 456666543 344554332 5788899988887653333444 788899999988887766677788888899999988
Q ss_pred CCCCCCCchhhhcCCCCcEEeecCCCcccc-chhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc
Q 036017 186 CSKLESFPGILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS 260 (283)
Q Consensus 186 ~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~ 260 (283)
|.+....+..+..+++|+.|++++|.++.+ +..+..+++|+.|++++|...+..+..+..+++|+.|++++|.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 877754445567888899999998888865 445778888999999887765555556778888888888888876
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.68 E-value=1e-15 Score=119.63 Aligned_cols=151 Identities=22% Similarity=0.196 Sum_probs=96.8
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccC
Q 036017 82 LKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAH 161 (283)
Q Consensus 82 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 161 (283)
.+.++..++. ...+|. .-.++|+.|++++|......+..+..+++|++|++++|.+.. ++......+++|+.|++++
T Consensus 21 ~~~v~c~~~~-l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKR-HASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSC-CSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCC-cCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-cChhhcccCCCcCEEECCC
Confidence 4556665554 334442 123677777777776655556666777777777777777643 4433222677777777777
Q ss_pred CcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccch-hhhcCCCccEEecccccCC
Q 036017 162 CKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPS-SVEHLEGLKELRMEYCYKL 236 (283)
Q Consensus 162 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~ 236 (283)
|.+....+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.++.++. .+..+++|+.|++++|+..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 7655544445566777777777776655 456666677777777777777776554 3566777777777776544
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=5.7e-16 Score=120.29 Aligned_cols=151 Identities=15% Similarity=0.094 Sum_probs=120.7
Q ss_pred cEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhH-hhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeec
Q 036017 106 ERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAF-ISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLY 184 (283)
Q Consensus 106 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 184 (283)
++++++++. ...+|..+ .+.+++|++++|.+.+..+.. +. .+++|+.|++++|.+....+..+..+++|++|+++
T Consensus 14 ~~l~~s~n~-l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~-~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQK-LNKIPEHI--PQYTAELRLNNNEFTVLEATGIFK-KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSC-CSSCCSCC--CTTCSEEECCSSCCCEECCCCCGG-GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCC-cccCccCC--CCCCCEEEcCCCcCCccCchhhhc-cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 578887754 34555433 346789999999876543433 44 78999999999988776666678889999999999
Q ss_pred CCCCCCCCchhhhcCCCCcEEeecCCCcccc-chhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc
Q 036017 185 NCSKLESFPGILENMARLEYIDLRLTAIKEL-PSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS 260 (283)
Q Consensus 185 ~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~ 260 (283)
+|.+....+..+..+++|++|++++|.++.+ +..+..+++|+.|++++|...+..|..+..+++|+.|++++|.++
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 9888776667788999999999999999966 556788999999999998766666788889999999999999886
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=1.7e-16 Score=126.63 Aligned_cols=167 Identities=19% Similarity=0.147 Sum_probs=86.1
Q ss_pred CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCC
Q 036017 36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTN 115 (283)
Q Consensus 36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 115 (283)
+++.+++.++.+..++....+++|+.|++++|.+..++ .+..+++|+.|++++|.. ..++.+..+++|+.|++++|..
T Consensus 20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i-~~~~~l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQI-SDLSPLKDLTKLEELSVNRNRL 97 (263)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC-CCCGGGTTCSSCCEEECCSSCC
T ss_pred HHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCcc-CCChhhccCCCCCEEECCCCcc
Confidence 44445555555544442225555555555555555544 345555555555555542 2233355555555555555443
Q ss_pred CCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchh
Q 036017 116 LPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGI 195 (283)
Q Consensus 116 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 195 (283)
. .++.. .. ++|+.|++++|.+.+ ++ .+. .+++|+.|++++|.+... + .+..+++|++|++++|.+.+. ..
T Consensus 98 ~-~l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~-~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~ 167 (263)
T 1xeu_A 98 K-NLNGI-PS-ACLSRLFLDNNELRD-TD-SLI-HLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GG 167 (263)
T ss_dssp S-CCTTC-CC-SSCCEEECCSSCCSB-SG-GGT-TCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TT
T ss_pred C-CcCcc-cc-CcccEEEccCCccCC-Ch-hhc-CcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HH
Confidence 2 22221 12 556666666655443 32 233 556666666666554332 2 355566666666666555443 34
Q ss_pred hhcCCCCcEEeecCCCccc
Q 036017 196 LENMARLEYIDLRLTAIKE 214 (283)
Q Consensus 196 ~~~~~~L~~l~l~~~~l~~ 214 (283)
+..+++|+.+++++|.+..
T Consensus 168 l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp STTCCCCCEEEEEEEEEEC
T ss_pred hccCCCCCEEeCCCCcccC
Confidence 5556666666666666553
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=4.6e-16 Score=124.16 Aligned_cols=170 Identities=19% Similarity=0.188 Sum_probs=138.7
Q ss_pred CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEe
Q 036017 55 STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRL 134 (283)
Q Consensus 55 ~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 134 (283)
.+.++..++++++.+..++ .+..+++|+.|++.+|. ...++.+..+++|+.|++++|... .++. +..+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLAGMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccchHHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEEC
Confidence 4667778888999888776 57789999999999987 556778889999999999997654 4444 889999999999
Q ss_pred cCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccc
Q 036017 135 EGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKE 214 (283)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 214 (283)
++|.+.+ ++... . ++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+ ++ .+..+++|+.|++++|.++.
T Consensus 93 ~~N~l~~-l~~~~--~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 93 NRNRLKN-LNGIP--S-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CSSCCSC-CTTCC--C-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCccCC-cCccc--c-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcc
Confidence 9998765 54432 3 899999999987654 33 57889999999999988765 33 67889999999999999997
Q ss_pred cchhhhcCCCccEEecccccCCC
Q 036017 215 LPSSVEHLEGLKELRMEYCYKLS 237 (283)
Q Consensus 215 ~~~~~~~~~~L~~L~l~~~~~~~ 237 (283)
+ ..+..+++|+.|++++|....
T Consensus 165 ~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 165 T-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp C-TTSTTCCCCCEEEEEEEEEEC
T ss_pred h-HHhccCCCCCEEeCCCCcccC
Confidence 7 567889999999999987554
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.66 E-value=1.3e-15 Score=118.33 Aligned_cols=150 Identities=15% Similarity=0.181 Sum_probs=72.8
Q ss_pred eEEEecCCCCCccCCCCCCCcceEEecCCCCcccch--hhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCC
Q 036017 38 RYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLW--EEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCT 114 (283)
Q Consensus 38 ~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 114 (283)
+.++++++.++.+|... .+.++.|++++|.+..++ ..+..+++|+.|++++|.+....+ .+..+++|++|++++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 45666666665555433 234456666666665542 124455555555555554322222 24444444444444443
Q ss_pred CCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCch
Q 036017 115 NLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPG 194 (283)
Q Consensus 115 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 194 (283)
.....+..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+.
T Consensus 93 l~~~~~~~~~-------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 93 LENVQHKMFK-------------------------GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp CCCCCGGGGT-------------------------TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred cCccCHhHhc-------------------------CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence 3322233334 444555555555444433344444455555555555544444444
Q ss_pred hhhcCCCCcEEeecCCCcc
Q 036017 195 ILENMARLEYIDLRLTAIK 213 (283)
Q Consensus 195 ~~~~~~~L~~l~l~~~~l~ 213 (283)
.+..+++|+.+++++|.+.
T Consensus 148 ~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTTTCTTCCEEECCSCCEE
T ss_pred HhcCCCCCCEEEecCcCCc
Confidence 4555555555555555544
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.66 E-value=1.9e-15 Score=117.36 Aligned_cols=114 Identities=22% Similarity=0.225 Sum_probs=60.8
Q ss_pred CCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCC
Q 036017 99 LSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSL 178 (283)
Q Consensus 99 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 178 (283)
+..+++|+.|++++|......+..+..+++|++|++++|.+.. ++......+++|+.|++++|.+....+..+..+++|
T Consensus 52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 130 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNL 130 (220)
T ss_dssp STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc-cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCC
Confidence 4444555555555444333334445555555555555555443 333322255566666666655544444555556666
Q ss_pred CeEeecCCCCCCCCchhhhcCCCCcEEeecCCCcc
Q 036017 179 SWLRLYNCSKLESFPGILENMARLEYIDLRLTAIK 213 (283)
Q Consensus 179 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 213 (283)
++|++++|.+.+..+..+..+++|+.+++++|.+.
T Consensus 131 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 66666665555444444556666666666666554
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=1.5e-15 Score=126.80 Aligned_cols=175 Identities=18% Similarity=0.112 Sum_probs=129.4
Q ss_pred ceEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhh-hh-ccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCC
Q 036017 37 LRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEE-KK-EAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNC 113 (283)
Q Consensus 37 L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-l~-~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~ 113 (283)
-+.++.+++.+..+|..+ .+.++.|++++|.+..++.. +. ++++|+.|++++|.+....+ .+..+++|+.|++++|
T Consensus 20 ~~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TTEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 357888888888887654 35688999999999877654 44 78899999999887544443 4788899999999987
Q ss_pred CCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhh---cCCCCCCeEeecCCCCCC
Q 036017 114 TNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASI---CKLKSLSWLRLYNCSKLE 190 (283)
Q Consensus 114 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~ 190 (283)
......+..+..+++|++|++++|.+....+..+. .+++|+.|++++|.+....+..+ ..+++|+.|++++|.+..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE-DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhC-CcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 75544445678888999999998887664455555 78889999999887655444334 568888889988877775
Q ss_pred CCchhhhcCCC--CcEEeecCCCcc
Q 036017 191 SFPGILENMAR--LEYIDLRLTAIK 213 (283)
Q Consensus 191 ~~~~~~~~~~~--L~~l~l~~~~l~ 213 (283)
..+..+..++. ++.+++++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 44456667776 477888888776
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=1.5e-15 Score=126.92 Aligned_cols=174 Identities=17% Similarity=0.085 Sum_probs=129.4
Q ss_pred eEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC-CCC-CCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCC
Q 036017 60 VVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP-DLS-ETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGC 137 (283)
Q Consensus 60 ~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 137 (283)
+.++++++.+..+|..+ ...++.|++++|.+....+ .+. .+++|+.|++++|......+..+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 57888999998888654 4568999999987544433 355 8899999999987665444556788899999999998
Q ss_pred CCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhh---hcCCCCcEEeecCCCccc
Q 036017 138 KILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGIL---ENMARLEYIDLRLTAIKE 214 (283)
Q Consensus 138 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~l~l~~~~l~~ 214 (283)
.+....+..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+ ..+++|+.|++++|.++.
T Consensus 99 ~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFS-DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhC-CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 87653333444 78899999999988776667778888999999999877765333333 568888999999998887
Q ss_pred cch-hhhcCCC--ccEEecccccCC
Q 036017 215 LPS-SVEHLEG--LKELRMEYCYKL 236 (283)
Q Consensus 215 ~~~-~~~~~~~--L~~L~l~~~~~~ 236 (283)
++. .+..++. ++.|++.+|+..
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 764 3566665 477888887654
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=8.4e-16 Score=114.25 Aligned_cols=136 Identities=21% Similarity=0.276 Sum_probs=77.0
Q ss_pred CCCCcEEEecCCCCc-CCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcE
Q 036017 126 LNNLSMLRLEGCKIL-GPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEY 204 (283)
Q Consensus 126 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 204 (283)
.+++++|++++|.+. +.+|..+. .+++|+.|++++|.+... ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 345666666665554 23444433 556666666666554332 34555666666666666655545555555666666
Q ss_pred EeecCCCccccc--hhhhcCCCccEEecccccCCCCCc---cccCCCcccceeecCCcccccccH
Q 036017 205 IDLRLTAIKELP--SSVEHLEGLKELRMEYCYKLSKLP---DNLGSLRSLKRLHTGKSAISQLPS 264 (283)
Q Consensus 205 l~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~~~l~---~~~~~l~~L~~L~l~~~~i~~~~~ 264 (283)
|++++|.++.++ ..+..+++|+.|++++|...+..+ ..+..+++|+.|++++|.++++|.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 666666666544 445666666666666654433222 245566666666666666655543
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=7.1e-19 Score=154.79 Aligned_cols=208 Identities=17% Similarity=0.172 Sum_probs=150.7
Q ss_pred CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEE-
Q 036017 55 STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLR- 133 (283)
Q Consensus 55 ~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~- 133 (283)
.+++|+.|++++|.+..+|..++.+.+|+.|++.++......+ .+ +..+......|..+..+++|+.|+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~---------~l-l~~~~~~~~~~~~l~~l~~L~~L~~ 416 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII---------LL-MRALDPLLYEKETLQYFSTLKAVDP 416 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH---------HH-HHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHH---------HH-HHhcccccCCHHHHHHHHhcccCcc
Confidence 5788889999999999999999999999999986543111000 00 011112334555666666777666
Q ss_pred ecCCCCcCCChh------Hhh-cCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEe
Q 036017 134 LEGCKILGPFPA------FIS-LSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYID 206 (283)
Q Consensus 134 l~~~~~~~~~~~------~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 206 (283)
++.+.+. .++. .+. .....|+.|++++|.+.. +|. ++.+++|+.|++++|.+. .+|..+..+++|+.|+
T Consensus 417 l~~n~~~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 492 (567)
T 1dce_A 417 MRAAYLD-DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQ 492 (567)
T ss_dssp GGHHHHH-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEE
T ss_pred hhhcccc-hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEE
Confidence 3333211 1111 000 012468999999987654 554 888999999999998877 6788899999999999
Q ss_pred ecCCCccccchhhhcCCCccEEecccccCCCCC-ccccCCCcccceeecCCcccccccH----HhhccCCCCceee
Q 036017 207 LRLTAIKELPSSVEHLEGLKELRMEYCYKLSKL-PDNLGSLRSLKRLHTGKSAISQLPS----SIADLKQVDGLSF 277 (283)
Q Consensus 207 l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~~~~----~~~~~~~L~~L~l 277 (283)
+++|.++.+| .++.+++|+.|++++|...+.. |..+..+++|+.|++++|.++.+|. ....+|+|+.|++
T Consensus 493 Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 493 ASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999988 7899999999999998765554 8889999999999999999986543 3456899998864
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=2.1e-15 Score=112.06 Aligned_cols=129 Identities=21% Similarity=0.267 Sum_probs=111.8
Q ss_pred CCCccCEEeccCCcCc-ccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccc-cchhhhcCCCccE
Q 036017 150 SLTNLEVLDLAHCKRL-NRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKE-LPSSVEHLEGLKE 227 (283)
Q Consensus 150 ~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~~~~~~~L~~ 227 (283)
.+++|+.|++++|.+. +.++..+..+++|++|++++|.+... ..+..+++|++|++++|.+.. +|..+..+++|+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 5688999999999865 46677778899999999999887654 677889999999999999996 7777788999999
Q ss_pred EecccccCCCCCc--cccCCCcccceeecCCcccccccH----HhhccCCCCceeeccCC
Q 036017 228 LRMEYCYKLSKLP--DNLGSLRSLKRLHTGKSAISQLPS----SIADLKQVDGLSFYGCR 281 (283)
Q Consensus 228 L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~i~~~~~----~~~~~~~L~~L~l~~c~ 281 (283)
|++++|.. +.++ ..+..+++|+.|++++|.++.++. .+..+++|++|++++|+
T Consensus 100 L~Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 100 LNLSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EECBSSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EeccCCcc-CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 99999864 4444 678899999999999999997776 78899999999999886
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.62 E-value=1.1e-14 Score=113.85 Aligned_cols=150 Identities=18% Similarity=0.130 Sum_probs=84.7
Q ss_pred CceEEEecCCCCCccCCCCCCCcceEEecCCCCcccc-hhhhhccCCccEEEccCCCCCCCCC--CCCCCCCCcEEeeeC
Q 036017 36 ELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELL-WEEKKEAFKLKSVDLCNSQNLTRMP--DLSETPNLERMYLLN 112 (283)
Q Consensus 36 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~ 112 (283)
.-+.++.++..+..+|... .++|+.|++++|.+..+ +..+..+++|+.|++++|.+ ..++ .+..+++|+.|++++
T Consensus 20 s~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC
Confidence 4566777777777666544 36777777777777755 34456667777777776663 3333 245666666666666
Q ss_pred CCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCC
Q 036017 113 CTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKL 189 (283)
Q Consensus 113 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 189 (283)
|......+..+..+++|++|++++|.+. .+|..+. .+++|+.|++++|.+....+..+..+++|+.|++.+|.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE-RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG-GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccc-cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 5443333333455666666666665544 3444443 5555666666555544333333444555555555554443
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=1.5e-15 Score=110.59 Aligned_cols=128 Identities=18% Similarity=0.188 Sum_probs=88.0
Q ss_pred CCCccCEEeccCCcCc-ccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccc-cchhhhcCCCccE
Q 036017 150 SLTNLEVLDLAHCKRL-NRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKE-LPSSVEHLEGLKE 227 (283)
Q Consensus 150 ~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~~~~~~~L~~ 227 (283)
.+++++.|++++|.+. +.++..+..+++|++|++++|.+... ..+..+++|++|++++|.++. +|..+..+++|+.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3456677777776654 34555556667777777777665543 456667777777777777775 6666667778888
Q ss_pred EecccccCCCC-CccccCCCcccceeecCCcccccccH----HhhccCCCCceeecc
Q 036017 228 LRMEYCYKLSK-LPDNLGSLRSLKRLHTGKSAISQLPS----SIADLKQVDGLSFYG 279 (283)
Q Consensus 228 L~l~~~~~~~~-l~~~~~~l~~L~~L~l~~~~i~~~~~----~~~~~~~L~~L~l~~ 279 (283)
|++++|...+. .+..+..+++|+.|++++|.++.++. .+..+++|++|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 88887654331 22567778888888888888886654 677888888888763
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=8.8e-15 Score=120.64 Aligned_cols=216 Identities=11% Similarity=0.013 Sum_probs=127.9
Q ss_pred CCcceEEecCCCCcccchh-hhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCC----CCcchhhccCCCCC
Q 036017 56 TDKLVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTN----LPFISSSIENLNNL 129 (283)
Q Consensus 56 ~~~L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~----~~~~~~~~~~~~~L 129 (283)
+++|+.+++.+ .+..++. .+.+|++|+.+++.++......+ .|..+.++..+....... .......+..+.+|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 56666666655 5554433 34556666666666554322211 344555554444332100 00011123344455
Q ss_pred c-EEEecCCCCcCCChhHhhc---CCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEE
Q 036017 130 S-MLRLEGCKILGPFPAFISL---SLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYI 205 (283)
Q Consensus 130 ~-~L~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 205 (283)
+ .+.+... +.++..+.. ...++..+.+.+.-...........+++|+.+++..|.+..--...|.++.+|+.+
T Consensus 179 ~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 179 ETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp EEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred ceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 4 3333321 122222211 24456666665532111222112248899999999877665445678899999999
Q ss_pred eecCCCccccchh-hhcCCCcc-EEecccccCCCCCccccCCCcccceeecCCcccccccH-HhhccCCCCceee
Q 036017 206 DLRLTAIKELPSS-VEHLEGLK-ELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLPS-SIADLKQVDGLSF 277 (283)
Q Consensus 206 ~l~~~~l~~~~~~-~~~~~~L~-~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l 277 (283)
++.++ +..++.. +..+++|+ .+++.+ .....-+..|..|++|+.++++.+.++.++. .+.+|++|+.++.
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99987 7766655 68899999 999987 3333334678899999999999999997774 7789999999874
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=4.9e-15 Score=107.83 Aligned_cols=126 Identities=21% Similarity=0.246 Sum_probs=65.6
Q ss_pred CCCcEEEecCCCCc-CCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEE
Q 036017 127 NNLSMLRLEGCKIL-GPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYI 205 (283)
Q Consensus 127 ~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 205 (283)
++++.|++++|.+. +.+|..+. .+++|+.|++++|.+... ..++.+++|++|++++|.+.+.++..+..+++|+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTD-EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCT-TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHh-hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 34555555555543 23444333 455555555555543332 344555556666665555554455555556666666
Q ss_pred eecCCCccccc--hhhhcCCCccEEecccccCCCCCc---cccCCCcccceeecC
Q 036017 206 DLRLTAIKELP--SSVEHLEGLKELRMEYCYKLSKLP---DNLGSLRSLKRLHTG 255 (283)
Q Consensus 206 ~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~~~l~---~~~~~l~~L~~L~l~ 255 (283)
++++|.++.++ ..+..+++|++|++++|...+..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 66666665443 445566666666666654332222 234555666666554
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.54 E-value=1.1e-16 Score=140.80 Aligned_cols=176 Identities=18% Similarity=0.142 Sum_probs=137.9
Q ss_pred CCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCC-------------CcCCChhHhhcCCCccCEEe-ccCCcC
Q 036017 99 LSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCK-------------ILGPFPAFISLSLTNLEVLD-LAHCKR 164 (283)
Q Consensus 99 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~~L~~L~-l~~~~~ 164 (283)
+..+++|+.|+++++. +..+|..+..+++|++|+++.+. ..+..|..+. .+++|+.|+ +..+.+
T Consensus 345 ~~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~-~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 345 SATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ-YFSTLKAVDPMRAAYL 422 (567)
T ss_dssp CSTTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHH-HHHHHHHHCGGGHHHH
T ss_pred cccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHH-HHHhcccCcchhhccc
Confidence 3567888899998865 45788888899999998886553 2333444555 677888887 444322
Q ss_pred cccchh------hhcC--CCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCC
Q 036017 165 LNRLSA------SICK--LKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKL 236 (283)
Q Consensus 165 ~~~~~~------~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~ 236 (283)
. .++. .+.. ...|+.|++++|.+.+ +|. +..+++|+.|++++|.++.+|..++.+++|+.|++++|...
T Consensus 423 ~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 423 D-DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp H-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred c-hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC
Confidence 1 1111 1111 2369999999987775 665 89999999999999999999999999999999999997655
Q ss_pred CCCccccCCCcccceeecCCcccccc--cHHhhccCCCCceeeccCC
Q 036017 237 SKLPDNLGSLRSLKRLHTGKSAISQL--PSSIADLKQVDGLSFYGCR 281 (283)
Q Consensus 237 ~~l~~~~~~l~~L~~L~l~~~~i~~~--~~~~~~~~~L~~L~l~~c~ 281 (283)
+ +| .+..+++|+.|++++|.++.+ |..+..+++|++|++++|+
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 4 77 789999999999999999977 8999999999999999884
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=3.9e-14 Score=106.01 Aligned_cols=134 Identities=16% Similarity=0.121 Sum_probs=95.7
Q ss_pred ccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCC
Q 036017 123 IENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARL 202 (283)
Q Consensus 123 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 202 (283)
+..+++|++|++++|.+.. ++.... ..++|+.|++++|.+... ..+..+++|++|++++|.+....+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~-~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGA-TLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGG-GTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhh-cCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4567788889998887654 444332 445888899888876543 456778888888888877664333445778888
Q ss_pred cEEeecCCCccccch--hhhcCCCccEEecccccCCCCCccc----cCCCcccceeecCCccccc
Q 036017 203 EYIDLRLTAIKELPS--SVEHLEGLKELRMEYCYKLSKLPDN----LGSLRSLKRLHTGKSAISQ 261 (283)
Q Consensus 203 ~~l~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~~~l~~~----~~~l~~L~~L~l~~~~i~~ 261 (283)
++|++++|.++.++. .+..+++|+.|++++|+.. .++.. +..+++|+.|+++.|.+.+
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 888888888887776 5677888888888887654 34443 6677788888888777653
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=6.9e-14 Score=104.67 Aligned_cols=131 Identities=13% Similarity=0.085 Sum_probs=81.8
Q ss_pred CCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCC
Q 036017 99 LSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSL 178 (283)
Q Consensus 99 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 178 (283)
+..+++|+.|++++|... .++......++|++|++++|.+.+ + ..+. .+++|+.|++++|.+....+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-L-DGFP-LLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-E-CCCC-CCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCc-c-cccc-cCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 445667777777776543 333322333477777777776654 2 3333 66777777777776544333334667777
Q ss_pred CeEeecCCCCCCCCch--hhhcCCCCcEEeecCCCccccchh----hhcCCCccEEeccccc
Q 036017 179 SWLRLYNCSKLESFPG--ILENMARLEYIDLRLTAIKELPSS----VEHLEGLKELRMEYCY 234 (283)
Q Consensus 179 ~~L~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~l~~~~~~----~~~~~~L~~L~l~~~~ 234 (283)
++|++++|.+. .++. .+..+++|+.+++++|.+..+|.. +..+++|+.|++++|.
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 77777776653 3443 566777777777777777766653 6677777777777654
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.48 E-value=1.2e-14 Score=131.60 Aligned_cols=191 Identities=17% Similarity=0.179 Sum_probs=98.1
Q ss_pred CCcceEEecCCCCcccchhhhhccCCccEEEccCCCC----CCCCC-CCCCCCCCcEEeeeCCCCCCcchhhccCCCCCc
Q 036017 56 TDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQN----LTRMP-DLSETPNLERMYLLNCTNLPFISSSIENLNNLS 130 (283)
Q Consensus 56 ~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~----~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 130 (283)
.+.++.+.+.++.+...+..+....+|..+.+..... ....+ .+..+++|+.|++++|... .++..+..+++|+
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCS
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCC
Confidence 4567777887777776554443344444444432211 11112 4677788888888886643 6666666888888
Q ss_pred EEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCC
Q 036017 131 MLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLT 210 (283)
Q Consensus 131 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 210 (283)
+|++++|.+. .+|..+. .+++|+.|++++|.+. .+|..++.+++|++|++++|.+. .+|..+..+++|+.|++++|
T Consensus 251 ~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 251 RLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp CCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred EEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 8888888776 5777676 7888888888887755 56777788888888888887664 56766888888888888888
Q ss_pred Ccc-ccchhhhcCCC-ccEEecccccCCCCCccccCCCcccceeecCCc
Q 036017 211 AIK-ELPSSVEHLEG-LKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKS 257 (283)
Q Consensus 211 ~l~-~~~~~~~~~~~-L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~ 257 (283)
.++ .+|..+..... +..+++.+|.....+|. .|+.|+++.|
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 887 44444433221 22356777666555543 4556666665
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.48 E-value=1.6e-14 Score=130.90 Aligned_cols=189 Identities=19% Similarity=0.158 Sum_probs=110.2
Q ss_pred cccCceEEEecCCCCCccCCCC-CCCcceEEe-----cCCCCcccchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCC
Q 036017 33 LPEELRYLHWHGYPLRTLPTNL-STDKLVVLN-----LPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNL 105 (283)
Q Consensus 33 ~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~-----l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L 105 (283)
-+ .++.|++.++.+...+... ...+|..+. +..+.+...+..+..+.+|+.|++++|.+. .++ .+..+++|
T Consensus 172 ~~-~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 172 TP-LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CC-ccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 35 7889999888875554333 233333333 333444444556778899999999999855 555 56789999
Q ss_pred cEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecC
Q 036017 106 ERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYN 185 (283)
Q Consensus 106 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 185 (283)
+.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+. .+++|+.|++++|.+ ..+|..++.+++|++|++++
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG-SCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG-GGTTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTT
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc-CCCCCCEEECCCCCC-CccChhhhcCCCccEEeCCC
Confidence 99999998655 78888999999999999999987 5788877 899999999999875 46677799999999999999
Q ss_pred CCCCCCCchhhhcCCC-CcEEeecCCCcc-ccchhhhcCCCccEEecccc
Q 036017 186 CSKLESFPGILENMAR-LEYIDLRLTAIK-ELPSSVEHLEGLKELRMEYC 233 (283)
Q Consensus 186 ~~~~~~~~~~~~~~~~-L~~l~l~~~~l~-~~~~~~~~~~~L~~L~l~~~ 233 (283)
|.+.+..+..+..... ...+++.+|.++ .+|. .|+.|++..|
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 9988877766554321 234677788776 4443 4556666665
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.47 E-value=2.9e-13 Score=102.72 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=12.9
Q ss_pred EEEecCCCCCccCCCCCCCcceEEecCCCCccc
Q 036017 39 YLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVEL 71 (283)
Q Consensus 39 ~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 71 (283)
+++++++.++.+|... ..+++.|++++|.+..
T Consensus 12 ~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~ 43 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDI-PLHTTELLLNDNELGR 43 (192)
T ss_dssp EEECTTSCCSSCCSCC-CTTCSEEECCSCCCCS
T ss_pred EEEcCCCCcCcCccCC-CCCCCEEECCCCcCCc
Confidence 4444444444444322 1144444444444443
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.46 E-value=6.4e-13 Score=100.81 Aligned_cols=128 Identities=16% Similarity=0.110 Sum_probs=68.8
Q ss_pred eEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCCC--CCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCC
Q 036017 60 VVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMPD--LSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGC 137 (283)
Q Consensus 60 ~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 137 (283)
+.++++++.++.+|..+ ..+++.|++++|.+....+. +..+++|++|++++|......+..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 45556666555555433 22566666666553332221 455666666666655544444555555666666666666
Q ss_pred CCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCC
Q 036017 138 KILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLE 190 (283)
Q Consensus 138 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 190 (283)
.+.+..+..+. .+++|+.|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 89 ~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 89 KIKEISNKMFL-GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCEECSSSST-TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred cCCccCHHHhc-CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 55443333333 55666666666655555545555556666666666655544
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.44 E-value=1.8e-12 Score=98.34 Aligned_cols=125 Identities=20% Similarity=0.211 Sum_probs=88.9
Q ss_pred eEEEecCCCCCccCCCCCCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCCCC
Q 036017 38 RYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCTNL 116 (283)
Q Consensus 38 ~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 116 (283)
++++++++.+..+|... .++|+.|++++|.+..++..+..+++|+.|++++|.+....+ .+..+++|++|++++|...
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 56777888887777654 367888888888888887777888888888888887544333 4777888888888877655
Q ss_pred CcchhhccCCCCCcEEEecCCCCcCCChhH-hhcCCCccCEEeccCCcCc
Q 036017 117 PFISSSIENLNNLSMLRLEGCKILGPFPAF-ISLSLTNLEVLDLAHCKRL 165 (283)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 165 (283)
...+..+..+++|++|++++|.+.. ++.. +. .+++|+.|++++|.+.
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~-~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFN-DLSALSHLAIGANPLY 139 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTT-TCTTCCEEECCSSCEE
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCe-eChhhhh-cCccccEEEeCCCCee
Confidence 4445566777778888887777654 4433 33 6777777777776553
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.40 E-value=4.8e-12 Score=94.65 Aligned_cols=108 Identities=19% Similarity=0.242 Sum_probs=52.0
Q ss_pred CCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEe
Q 036017 127 NNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYID 206 (283)
Q Consensus 127 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 206 (283)
+++++|++++|.+.+..+..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFD-KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhc-CcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 4555555555554332222222 455555555555544333333344555555555555544433333344555555555
Q ss_pred ecCCCccccchh-hhcCCCccEEecccccC
Q 036017 207 LRLTAIKELPSS-VEHLEGLKELRMEYCYK 235 (283)
Q Consensus 207 l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~ 235 (283)
+++|.++.++.. +..+++|+.|++++|+.
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 555555544443 24455555555555443
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=5.6e-15 Score=112.83 Aligned_cols=125 Identities=20% Similarity=0.187 Sum_probs=67.6
Q ss_pred HhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCc
Q 036017 146 FISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGL 225 (283)
Q Consensus 146 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L 225 (283)
.+. .+++|+.|++++|.+.. ++ .+..+++|++|++++|.+. .++..+..+++|+.|++++|.++.++ .+..+++|
T Consensus 43 ~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVNL 117 (198)
T ss_dssp HHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHS
T ss_pred HHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCC
Confidence 444 55556666665554332 33 4455555666666555444 34444445556666666666666554 45556666
Q ss_pred cEEecccccCCCCCc--cccCCCcccceeecCCccccccc-----------HHhhccCCCCcee
Q 036017 226 KELRMEYCYKLSKLP--DNLGSLRSLKRLHTGKSAISQLP-----------SSIADLKQVDGLS 276 (283)
Q Consensus 226 ~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~i~~~~-----------~~~~~~~~L~~L~ 276 (283)
+.|++++|.... ++ ..+..+++|+.|++++|.++... ..+..+++|++|+
T Consensus 118 ~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 118 RVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 666666654322 22 24556666666666666664321 1245666666665
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.37 E-value=4.4e-12 Score=96.20 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=64.4
Q ss_pred CCCcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEe
Q 036017 103 PNLERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLR 182 (283)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 182 (283)
++|++|++++|.. ..+|..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.+....+..+..+++|++|+
T Consensus 31 ~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~-~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFS-NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHcc-CCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 3455555555432 24444556666666666666665543333343 666666666666665555555566666777777
Q ss_pred ecCCCCCCCCchhhhcCCCCcEEeecCCCcc
Q 036017 183 LYNCSKLESFPGILENMARLEYIDLRLTAIK 213 (283)
Q Consensus 183 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 213 (283)
+++|.+....+..+..+++|+.+++++|.+.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 7766655433345666777777777777664
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.36 E-value=9.5e-12 Score=93.01 Aligned_cols=13 Identities=15% Similarity=0.273 Sum_probs=5.4
Q ss_pred cceEEecCCCCcc
Q 036017 58 KLVVLNLPCSNVE 70 (283)
Q Consensus 58 ~L~~l~l~~~~~~ 70 (283)
+|+.|++++|.+.
T Consensus 29 ~l~~L~l~~n~l~ 41 (177)
T 2o6r_A 29 SATRLELESNKLQ 41 (177)
T ss_dssp TCSEEECCSSCCC
T ss_pred CCcEEEeCCCccc
Confidence 3444444444433
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.33 E-value=1e-10 Score=98.58 Aligned_cols=231 Identities=12% Similarity=0.120 Sum_probs=130.5
Q ss_pred CceEEEecCCCCCccCCCC-CCCcceEEecCCCCcccch-hhhhccCCccEEEccCCCCCCCCC--CCCCCCCCcEEeee
Q 036017 36 ELRYLHWHGYPLRTLPTNL-STDKLVVLNLPCSNVELLW-EEKKEAFKLKSVDLCNSQNLTRMP--DLSETPNLERMYLL 111 (283)
Q Consensus 36 ~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~ 111 (283)
+|+.+.+... +..++... .-.+|+.+.+.+ .+..+. ..+.+|.+|+.+++..+. ...++ .|. +.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhhEe-ecccCEEEeC
Confidence 5777776554 55554433 123577777765 444443 245667777777777655 33333 233 5677777776
Q ss_pred CCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCC--
Q 036017 112 NCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKL-- 189 (283)
Q Consensus 112 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-- 189 (283)
.+ ...--...+..+++|+.+.+..+ + ..++.... .-.+|+.+.+.. .+.......+.+|++|+.+.+.++...
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l-~~I~~~aF-~~~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-V-STIGQEAF-RESGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-C-CEECTTTT-TTCCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-c-cCcccccc-ccCCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 43 22222334667777777777654 2 22333333 225677777743 333333445667777777777664433
Q ss_pred ---CCCchhhhcCCCCcEEeecCCCccccchh-hhcCCCccEEecccccCCCCCccccCCCcccceeecCCccccccc-H
Q 036017 190 ---ESFPGILENMARLEYIDLRLTAIKELPSS-VEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLP-S 264 (283)
Q Consensus 190 ---~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~-~ 264 (283)
..-...|.+|++|+.+++.. .+..+... +..|++|+.+.+..+ ....-...|..+ +|+.+++.++.+..++ .
T Consensus 287 ~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence 11234566777777777773 45555443 466777777777653 222223456667 7777777777666443 3
Q ss_pred HhhccC-CCCceeec
Q 036017 265 SIADLK-QVDGLSFY 278 (283)
Q Consensus 265 ~~~~~~-~L~~L~l~ 278 (283)
.+..++ .++.|++.
T Consensus 364 ~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 364 VWYGFPDDITVIRVP 378 (401)
T ss_dssp SCCCSCTTCCEEEEC
T ss_pred cccCCCCCccEEEeC
Confidence 344443 55666554
No 136
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=4.3e-13 Score=112.11 Aligned_cols=158 Identities=13% Similarity=0.086 Sum_probs=98.4
Q ss_pred cCCccEEEccCCCCCCCCC-C----C-CCCCCCcEEeeeCCCCCCcchh-hccCCCCCcEEEecCCCCcCCChhHhh---
Q 036017 79 AFKLKSVDLCNSQNLTRMP-D----L-SETPNLERMYLLNCTNLPFISS-SIENLNNLSMLRLEGCKILGPFPAFIS--- 148 (283)
Q Consensus 79 ~~~L~~L~l~~~~~~~~~~-~----~-~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~--- 148 (283)
.+.|+.|++++|.+..... . + ...++|++|++++|........ ....+++|+.|++++|.+.+.....+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 5678888888877432211 1 1 2346888888888765433222 223456788888888876543222221
Q ss_pred -cCCCccCEEeccCCcCcc----cchhhhcCCCCCCeEeecCCCCCCC----CchhhhcCCCCcEEeecCCCcc-----c
Q 036017 149 -LSLTNLEVLDLAHCKRLN----RLSASICKLKSLSWLRLYNCSKLES----FPGILENMARLEYIDLRLTAIK-----E 214 (283)
Q Consensus 149 -~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~l~-----~ 214 (283)
...++|+.|++++|.+.. .++..+...++|++|++++|.+... +...+...++|+.|++++|.++ .
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 135678888888877543 2334456677888888888776532 2344556677888888888776 2
Q ss_pred cchhhhcCCCccEEecccccCC
Q 036017 215 LPSSVEHLEGLKELRMEYCYKL 236 (283)
Q Consensus 215 ~~~~~~~~~~L~~L~l~~~~~~ 236 (283)
+...+...++|++|++++|...
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 3444556677888888877644
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.31 E-value=2.2e-11 Score=100.26 Aligned_cols=245 Identities=13% Similarity=0.070 Sum_probs=160.2
Q ss_pred CCCceeEEeeccccCCC--CCCCccc---------ccC-CcCCC--------cccCceEEEecCCCCCccCCCC--CCCc
Q 036017 1 MTNLRLLKFYLHNLRGD--PIMSSKV---------HLD-QGLDY--------LPEELRYLHWHGYPLRTLPTNL--STDK 58 (283)
Q Consensus 1 ~~~L~~l~l~~~~~~~~--~~~~~~~---------~~~-~~~~~--------~~~~L~~L~l~~~~~~~~~~~~--~~~~ 58 (283)
+++|++|++++|.+... ..+.... .+| ..+.. ++ +|+.|.+.+ .+..++... +|++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~-~L~~l~L~~-~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ-TLEKVILSE-KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECT-TCCC-CBCT-TCCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccC-CCcEEECCc-cccchhHHHhhcCcc
Confidence 46899999999988721 1001111 223 34556 88 999999999 888887644 8999
Q ss_pred ceEEecCCCCcccchh-hhhccCCccEEEccCCC---CCCCCC--CCCCCCCCc-EEeeeCCCCCCcchhhc----cCCC
Q 036017 59 LVVLNLPCSNVELLWE-EKKEAFKLKSVDLCNSQ---NLTRMP--DLSETPNLE-RMYLLNCTNLPFISSSI----ENLN 127 (283)
Q Consensus 59 L~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~---~~~~~~--~~~~~~~L~-~L~l~~~~~~~~~~~~~----~~~~ 127 (283)
|+.++++++.+..++. .+..+.++..+...... ....+. .+.++..|+ .+.+.... .++..+ ....
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPR 202 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGG
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcccCcc
Confidence 9999999998876654 45566667666655421 112222 355677777 45554422 222221 2344
Q ss_pred CCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCc-EEe
Q 036017 128 NLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLE-YID 206 (283)
Q Consensus 128 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~l~ 206 (283)
++..+.+.+.-... ....+...+++|+.+++.+|.+.......+.+|.+|+++++..+ +..--...|.++.+|+ .++
T Consensus 203 ~~~~l~~~~~l~~~-~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~ 280 (329)
T 3sb4_A 203 DINFLTIEGKLDNA-DFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLE 280 (329)
T ss_dssp GCSEEEEEECCCHH-HHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred ccceEEEeeeecHH-HHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEE
Confidence 66777776642211 12223224788999999987766555666888999999999885 4333346788889998 999
Q ss_pred ecCCCccccch-hhhcCCCccEEecccccCCCCCccccCCCcccceee
Q 036017 207 LRLTAIKELPS-SVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLH 253 (283)
Q Consensus 207 l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 253 (283)
+.+ .++.++. .+..|++|+.+++.++.....-...|..+++|+.++
T Consensus 281 l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 281 LPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred Ecc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 988 6666654 468899999999977554444445788888888875
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.30 E-value=8.6e-14 Score=106.20 Aligned_cols=110 Identities=22% Similarity=0.293 Sum_probs=95.2
Q ss_pred chhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchhhhcCCCccEEecccccCCCCCccccCCCc
Q 036017 168 LSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLR 247 (283)
Q Consensus 168 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~ 247 (283)
++..+..+++|++|++++|.+.. ++ .+..+++|+.|++++|.++.+|..+..+++|+.|++++|... .++ .+..++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~~~l~ 115 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA-SLS-GIEKLV 115 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECC-CHH-HHHHHH
T ss_pred hhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCC-cCC-ccccCC
Confidence 34478889999999999987766 66 788999999999999999999988888899999999998654 455 577889
Q ss_pred ccceeecCCcccccccH--HhhccCCCCceeeccCC
Q 036017 248 SLKRLHTGKSAISQLPS--SIADLKQVDGLSFYGCR 281 (283)
Q Consensus 248 ~L~~L~l~~~~i~~~~~--~~~~~~~L~~L~l~~c~ 281 (283)
+|+.|++++|.++.++. .+..+++|++|++++|+
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 99999999999997764 68899999999999874
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.28 E-value=5e-10 Score=94.46 Aligned_cols=214 Identities=10% Similarity=0.092 Sum_probs=127.7
Q ss_pred CceEEEecCCCCCccCCCC--CCCcceEEecCCCCcccchhhhhccCCccEEEccCCCCCCCCC--CCCCCCCCcEEeee
Q 036017 36 ELRYLHWHGYPLRTLPTNL--STDKLVVLNLPCSNVELLWEEKKEAFKLKSVDLCNSQNLTRMP--DLSETPNLERMYLL 111 (283)
Q Consensus 36 ~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~ 111 (283)
+|+.+.+.. .+..++... +|++|+.+++.++.+..++.....+.+|+.+.+..+ ...++ +|..|++|+.+.+.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecC
Confidence 577777765 555554332 778888888877777776655444677888887644 33333 57777788888876
Q ss_pred CCCCCCcch-hhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCc-----ccchhhhcCCCCCCeEeecC
Q 036017 112 NCTNLPFIS-SSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRL-----NRLSASICKLKSLSWLRLYN 185 (283)
Q Consensus 112 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~ 185 (283)
.+ +..++ ..+.. .+|+.+.+..+ +. .++......+++|+.+++.++... ......+.+|++|+.+.+..
T Consensus 235 ~~--l~~I~~~aF~~-~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 235 EN--VSTIGQEAFRE-SGITTVKLPNG-VT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp TT--CCEECTTTTTT-CCCSEEEEETT-CC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred CC--ccCcccccccc-CCccEEEeCCC-cc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 53 22222 22333 57777777543 22 233333337777888877765432 23344566777888887764
Q ss_pred CCCCCCCchhhhcCCCCcEEeecCCCccccchh-hhcCCCccEEecccccCCCCCccccCCCc-ccceeecCCcccc
Q 036017 186 CSKLESFPGILENMARLEYIDLRLTAIKELPSS-VEHLEGLKELRMEYCYKLSKLPDNLGSLR-SLKRLHTGKSAIS 260 (283)
Q Consensus 186 ~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~l~-~L~~L~l~~~~i~ 260 (283)
....--...|.+|.+|+.+.+..+ ++.+... +..+ +|+.+++.++.........+..++ .++.+.+..+.+.
T Consensus 310 -~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 310 -SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp -TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred -ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 333223356667777888887544 5544433 4566 788888877654433334455553 5667776665544
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=1.5e-12 Score=108.76 Aligned_cols=159 Identities=16% Similarity=0.121 Sum_probs=112.1
Q ss_pred CCCCcEEeeeCCCCCCcch----hhcc-CCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhh----h
Q 036017 102 TPNLERMYLLNCTNLPFIS----SSIE-NLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSAS----I 172 (283)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~----~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l 172 (283)
.++|+.|++++|....... ..+. ..++|++|++++|.+.......+...+++|+.|++++|.+....... +
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4678899999887654322 2233 33689999999998754333333324568999999998765433332 2
Q ss_pred -cCCCCCCeEeecCCCCCCC----CchhhhcCCCCcEEeecCCCcc-----ccchhhhcCCCccEEecccccCCC----C
Q 036017 173 -CKLKSLSWLRLYNCSKLES----FPGILENMARLEYIDLRLTAIK-----ELPSSVEHLEGLKELRMEYCYKLS----K 238 (283)
Q Consensus 173 -~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~~----~ 238 (283)
...++|++|++++|.+... ++..+...++|++|++++|.++ .+...+...++|+.|++++|.... .
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3467899999999887542 3344567888999999999987 235556778899999999986553 2
Q ss_pred CccccCCCcccceeecCCcccc
Q 036017 239 LPDNLGSLRSLKRLHTGKSAIS 260 (283)
Q Consensus 239 l~~~~~~l~~L~~L~l~~~~i~ 260 (283)
+...+...++|+.|++++|.|+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 3344556688999999999998
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.17 E-value=1.8e-10 Score=85.69 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=77.2
Q ss_pred cEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecC
Q 036017 130 SMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRL 209 (283)
Q Consensus 130 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 209 (283)
+.++++++.+ +.+|..+ +++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 15 ~~l~~~~n~l-~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCC-SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCC-CccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 5778887765 3466543 37788888888887666677778888888888888777664445567788888888888
Q ss_pred CCccccchh-hhcCCCccEEecccccCC
Q 036017 210 TAIKELPSS-VEHLEGLKELRMEYCYKL 236 (283)
Q Consensus 210 ~~l~~~~~~-~~~~~~L~~L~l~~~~~~ 236 (283)
|.++.++.. +..+++|+.|++++|+..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 888877765 677888888888887644
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.15 E-value=2.2e-10 Score=84.88 Aligned_cols=104 Identities=18% Similarity=0.190 Sum_probs=79.1
Q ss_pred CcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeec
Q 036017 129 LSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLR 208 (283)
Q Consensus 129 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 208 (283)
.+.++++++.+.. +|..+ +++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc-cCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 5678888877644 66543 3778888888887766667778888888888888887775555566788888888888
Q ss_pred CCCccccchh-hhcCCCccEEecccccCC
Q 036017 209 LTAIKELPSS-VEHLEGLKELRMEYCYKL 236 (283)
Q Consensus 209 ~~~l~~~~~~-~~~~~~L~~L~l~~~~~~ 236 (283)
+|.++.++.. +..+++|+.|++++|+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 8888877664 678888888888887654
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.13 E-value=2.1e-10 Score=85.37 Aligned_cols=107 Identities=15% Similarity=0.191 Sum_probs=87.4
Q ss_pred cCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchh-hhcCCCccEEeccc
Q 036017 154 LEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSS-VEHLEGLKELRMEY 232 (283)
Q Consensus 154 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~ 232 (283)
-+.++++++.+ ..+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.++.+|.. +..+++|+.|++++
T Consensus 14 ~~~l~~~~n~l-~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRL-ASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCC-SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCC-CccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 36788888664 4555544 37899999999988877778889999999999999999988876 47899999999999
Q ss_pred ccCCCCCccccCCCcccceeecCCccccccc
Q 036017 233 CYKLSKLPDNLGSLRSLKRLHTGKSAISQLP 263 (283)
Q Consensus 233 ~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~ 263 (283)
|...+..+..+..+++|+.|++++|.+...+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 7655433345889999999999999988443
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.10 E-value=7.5e-10 Score=82.05 Aligned_cols=102 Identities=19% Similarity=0.146 Sum_probs=51.9
Q ss_pred ceEEEecCCCCCccCCCCCCCcceEEecCCCCcccc-hhhhhccCCccEEEccCCCCCCCCC-CCCCCCCCcEEeeeCCC
Q 036017 37 LRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVELL-WEEKKEAFKLKSVDLCNSQNLTRMP-DLSETPNLERMYLLNCT 114 (283)
Q Consensus 37 L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 114 (283)
.+.++++++.+..+|... .++|+.|++++|.+..+ +..+.++++|+.|++++|.+....+ .+..+++|+.|++++|.
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 345566666655555433 25556666666666554 3344555566666665555332222 23455555555555544
Q ss_pred CCCcchhhccCCCCCcEEEecCCCC
Q 036017 115 NLPFISSSIENLNNLSMLRLEGCKI 139 (283)
Q Consensus 115 ~~~~~~~~~~~~~~L~~L~l~~~~~ 139 (283)
.....+..+..+++|++|++++|++
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 3322222345555555555555544
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.02 E-value=6.4e-10 Score=92.27 Aligned_cols=178 Identities=15% Similarity=0.166 Sum_probs=104.0
Q ss_pred cCCccEEEccCCCCC-CCC--------CCCCCCCCCcEEeeeCCCC---------CCcchhhccCCCCCcEEEecCCCCc
Q 036017 79 AFKLKSVDLCNSQNL-TRM--------PDLSETPNLERMYLLNCTN---------LPFISSSIENLNNLSMLRLEGCKIL 140 (283)
Q Consensus 79 ~~~L~~L~l~~~~~~-~~~--------~~~~~~~~L~~L~l~~~~~---------~~~~~~~~~~~~~L~~L~l~~~~~~ 140 (283)
...++.|.+...... ... .+...+++|+.|.+..... ...+...+..+|+|+.|++.++.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 346778887755422 111 1234567888888865321 1124455677888888888776312
Q ss_pred CCChhHhhcCCCccCEEeccCCcCcccchhhhc--CCCCCCeEeecCC--CCCC-----CCchhh--hcCCCCcEEeecC
Q 036017 141 GPFPAFISLSLTNLEVLDLAHCKRLNRLSASIC--KLKSLSWLRLYNC--SKLE-----SFPGIL--ENMARLEYIDLRL 209 (283)
Q Consensus 141 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~~~~-----~~~~~~--~~~~~L~~l~l~~ 209 (283)
. ++. + ..++|+.|++..+.+.......+. .+|+|++|++..+ ...+ .+...+ ..+++|++|++.+
T Consensus 186 ~-l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~ 261 (362)
T 2ra8_A 186 S-IGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVD 261 (362)
T ss_dssp B-CCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEES
T ss_pred e-ecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCC
Confidence 2 332 2 367888888887765444333333 6788888887531 1111 111122 2467888888888
Q ss_pred CCcc-ccchhh---hcCCCccEEecccccCCCC----CccccCCCcccceeecCCcccc
Q 036017 210 TAIK-ELPSSV---EHLEGLKELRMEYCYKLSK----LPDNLGSLRSLKRLHTGKSAIS 260 (283)
Q Consensus 210 ~~l~-~~~~~~---~~~~~L~~L~l~~~~~~~~----l~~~~~~l~~L~~L~l~~~~i~ 260 (283)
|.++ ..+..+ ..++.|+.|+++.|..... ++..+..+++|+.|++++|.|+
T Consensus 262 ~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 262 AEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 8776 222222 3567888888877643321 2333345678888888888777
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.91 E-value=3.3e-09 Score=87.97 Aligned_cols=56 Identities=20% Similarity=0.196 Sum_probs=25.4
Q ss_pred CCCcccCceEEEecCCCCCccCCCCCCCcceEEecCCCCccc-chhhhh--ccCCccEEEc
Q 036017 30 LDYLPEELRYLHWHGYPLRTLPTNLSTDKLVVLNLPCSNVEL-LWEEKK--EAFKLKSVDL 87 (283)
Q Consensus 30 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~l~--~~~~L~~L~l 87 (283)
+..+| +|+.|.++++....++. ...++|+.|++..+.+.. ....+. .+++|+.|++
T Consensus 168 l~~~P-~L~~L~L~g~~~l~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L 226 (362)
T 2ra8_A 168 LDAMP-LLNNLKIKGTNNLSIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL 226 (362)
T ss_dssp HHTCT-TCCEEEEECCBTCBCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEE
T ss_pred HhcCC-CCcEEEEeCCCCceecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEE
Confidence 34455 66666665542222222 234555555555554431 111122 3555555555
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.91 E-value=3.5e-09 Score=87.67 Aligned_cols=103 Identities=14% Similarity=0.088 Sum_probs=80.7
Q ss_pred EEeccCCcCcccchhhhcCCCCCCeEeecC-CCCCCCCchhhhcCCCCcEEeecCCCccccch-hhhcCCCccEEecccc
Q 036017 156 VLDLAHCKRLNRLSASICKLKSLSWLRLYN-CSKLESFPGILENMARLEYIDLRLTAIKELPS-SVEHLEGLKELRMEYC 233 (283)
Q Consensus 156 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~L~l~~~ 233 (283)
.++.+++.....+|. +..+.+|++|++++ |.+....+..+..+++|+.|++++|.++.++. .+..+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 457776523556777 88899999999996 77766566788899999999999999996655 5789999999999997
Q ss_pred cCCCCCccccCCCcccceeecCCcccc
Q 036017 234 YKLSKLPDNLGSLRSLKRLHTGKSAIS 260 (283)
Q Consensus 234 ~~~~~l~~~~~~l~~L~~L~l~~~~i~ 260 (283)
...+..+..+..++ |+.|++.+|.++
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 65543334444444 999999999887
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.88 E-value=7.3e-08 Score=81.17 Aligned_cols=257 Identities=12% Similarity=0.081 Sum_probs=123.5
Q ss_pred CCCceeEEeeccccCCCCCCCccccc-CCcCCCcccCceEEEecCCCCCccCCCC--CCCcceEEecCCCC---------
Q 036017 1 MTNLRLLKFYLHNLRGDPIMSSKVHL-DQGLDYLPEELRYLHWHGYPLRTLPTNL--STDKLVVLNLPCSN--------- 68 (283)
Q Consensus 1 ~~~L~~l~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~--------- 68 (283)
|.+|+.+.+..+ ++ .+ ..++..|. +|+.+++... +..++... ++..|+.+.+..+-
T Consensus 70 c~~L~~i~lp~~-i~---------~I~~~aF~~c~-~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~ 137 (394)
T 4fs7_A 70 CRKVTEIKIPST-VR---------EIGEFAFENCS-KLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFK 137 (394)
T ss_dssp CTTEEEEECCTT-CC---------EECTTTTTTCT-TCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTT
T ss_pred CCCceEEEeCCC-cc---------CcchhHhhCCC-CCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeee
Confidence 456777777522 22 22 34577788 8888888643 44443322 56666655543221
Q ss_pred ---cc---------cc-hhhhhccCCccEEEccCCCCCCCCCCCCCCCCCcEEeeeCCCCCCcchhhccCCCCCcEEEec
Q 036017 69 ---VE---------LL-WEEKKEAFKLKSVDLCNSQNLTRMPDLSETPNLERMYLLNCTNLPFISSSIENLNNLSMLRLE 135 (283)
Q Consensus 69 ---~~---------~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 135 (283)
.. .+ ...+.++.+|+.+.+..+...-.-..|..+.+|+.+.+..+ ...-....+..+..|+.+.+.
T Consensus 138 ~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 138 GCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp TCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred cccccccccCccccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 00 01 12355678888888865431111124677788887777553 111112233445555554443
Q ss_pred CCCCc--------------------CCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchh
Q 036017 136 GCKIL--------------------GPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGI 195 (283)
Q Consensus 136 ~~~~~--------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 195 (283)
.+... ..+.......+..++.+.+..+. .......+..+..++........+ ....
T Consensus 217 ~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i---~~~~ 292 (394)
T 4fs7_A 217 NSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIV---PEKT 292 (394)
T ss_dssp TTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEE---CTTT
T ss_pred CCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCceee---cccc
Confidence 32110 00111111133344444443321 111111223333333333322111 0123
Q ss_pred hhcCCCCcEEeecCCCccccchh-hhcCCCccEEecccccCCCCC-ccccCCCcccceeecCCccccccc-HHhhccCCC
Q 036017 196 LENMARLEYIDLRLTAIKELPSS-VEHLEGLKELRMEYCYKLSKL-PDNLGSLRSLKRLHTGKSAISQLP-SSIADLKQV 272 (283)
Q Consensus 196 ~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~~~-~~~~~~~~L 272 (283)
+..+.+|+.+.+..+ +..+... +..+.+|+.+++... ++.+ ...+..|.+|+.+++..+ ++.+. ..+.+|++|
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 445666666666543 4434333 456677777777542 2222 244666777777777654 55443 355677777
Q ss_pred Cceeec
Q 036017 273 DGLSFY 278 (283)
Q Consensus 273 ~~L~l~ 278 (283)
+.+++.
T Consensus 369 ~~i~lp 374 (394)
T 4fs7_A 369 KKVELP 374 (394)
T ss_dssp CEEEEE
T ss_pred CEEEEC
Confidence 777664
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.83 E-value=1.3e-08 Score=84.22 Aligned_cols=104 Identities=13% Similarity=0.017 Sum_probs=75.4
Q ss_pred EEeeeCCCCCCcchhhccCCCCCcEEEecC-CCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeecC
Q 036017 107 RMYLLNCTNLPFISSSIENLNNLSMLRLEG-CKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYN 185 (283)
Q Consensus 107 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 185 (283)
.++.+++..+..+|. +..+.+|+.|++++ |.+.+..+..+. .+++|+.|++++|.+.+..+..+..+++|++|++++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSC-SCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhc-cccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 456665424556777 88888888999985 776553334455 788899999988887776677778888888998888
Q ss_pred CCCCCCCchhhhcCCCCcEEeecCCCcc
Q 036017 186 CSKLESFPGILENMARLEYIDLRLTAIK 213 (283)
Q Consensus 186 ~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 213 (283)
|.+....+..+..+. |+.|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 777754444444444 888888888876
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.78 E-value=1.9e-07 Score=78.64 Aligned_cols=233 Identities=15% Similarity=0.165 Sum_probs=147.2
Q ss_pred CcCCCcccCceEEEecCCCCCccCCCC--CCCcceEEecCCCCcccch-hhhhccCCccEEEccCCCCCCCCCCCCCCCC
Q 036017 28 QGLDYLPEELRYLHWHGYPLRTLPTNL--STDKLVVLNLPCSNVELLW-EEKKEAFKLKSVDLCNSQNLTRMPDLSETPN 104 (283)
Q Consensus 28 ~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 104 (283)
..+..++ +|+.+.+.+. ...++... ++.+|+.+.+..+ +..+. ..+.++..|+.+.+..+... .........+
T Consensus 156 ~aF~~c~-~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~ 231 (394)
T 4fs7_A 156 EAFATCE-SLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTG 231 (394)
T ss_dssp TTTTTCT-TCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCC
T ss_pred hhhcccC-CCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCC
Confidence 4577788 9999999754 34444433 7899999999765 44333 34567788888877654311 1123345678
Q ss_pred CcEEeeeCCCCCCcchhhccCCCCCcEEEecCCCCcCCChhHhhcCCCccCEEeccCCcCcccchhhhcCCCCCCeEeec
Q 036017 105 LERMYLLNCTNLPFISSSIENLNNLSMLRLEGCKILGPFPAFISLSLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLY 184 (283)
Q Consensus 105 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 184 (283)
|+.+.+... ...-....+..+..++.+.+..+.. . +.......+..++.+...... .....+..+.+|+.+.+.
T Consensus 232 l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~-i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 232 VKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-R-IGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLL 305 (394)
T ss_dssp CCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-E-ECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEEC
T ss_pred CceEEECCC-ceecccccccccccceeEEcCCCcc-e-eeccccccccccceeccCcee---eccccccccccccccccc
Confidence 888888653 2211223456788888888876532 2 222222267778877765532 222345678889888886
Q ss_pred CCCCCCCCchhhhcCCCCcEEeecCCCccccch-hhhcCCCccEEecccccCCCCC-ccccCCCcccceeecCCcccccc
Q 036017 185 NCSKLESFPGILENMARLEYIDLRLTAIKELPS-SVEHLEGLKELRMEYCYKLSKL-PDNLGSLRSLKRLHTGKSAISQL 262 (283)
Q Consensus 185 ~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~~ 262 (283)
.+ ...--...|.++.+|+.+++..+ ++.+.. .+..|.+|+.+.+..+ +..+ ..++..|.+|+.+++..+ ++.+
T Consensus 306 ~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~-~~~~ 380 (394)
T 4fs7_A 306 DS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR-LEQY 380 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG-GGGG
T ss_pred cc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC-CEEh
Confidence 52 32222346778889999988643 555544 3678899999999764 3333 356888899999988653 4444
Q ss_pred cHHhhccCCCCce
Q 036017 263 PSSIADLKQVDGL 275 (283)
Q Consensus 263 ~~~~~~~~~L~~L 275 (283)
...+.+|++|+.+
T Consensus 381 ~~~F~~c~~L~~I 393 (394)
T 4fs7_A 381 RYDFEDTTKFKWI 393 (394)
T ss_dssp GGGBCTTCEEEEE
T ss_pred hheecCCCCCcEE
Confidence 4566777777654
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.76 E-value=1.2e-06 Score=73.82 Aligned_cols=103 Identities=18% Similarity=0.345 Sum_probs=51.0
Q ss_pred hcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchh-hhcCCCccEEecccccCCCCC-ccccCCCccc
Q 036017 172 ICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSS-VEHLEGLKELRMEYCYKLSKL-PDNLGSLRSL 249 (283)
Q Consensus 172 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L 249 (283)
+.++..|+.+.+... ....-...+.++.+|+.+.+. +.+..++.. +..|.+|+.+.+..+ ++.+ ...|..|.+|
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTC
T ss_pred eeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCC
Confidence 444555666655432 111112334455566666653 233334333 455666666666542 2222 2345566666
Q ss_pred ceeecCCccccccc-HHhhccCCCCceeecc
Q 036017 250 KRLHTGKSAISQLP-SSIADLKQVDGLSFYG 279 (283)
Q Consensus 250 ~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~ 279 (283)
+.+.+..+ ++.+. ..+.+|++|+.+++.+
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESS
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECC
Confidence 66666433 44443 3456666666666554
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.75 E-value=8.3e-09 Score=77.45 Aligned_cols=111 Identities=12% Similarity=0.099 Sum_probs=70.0
Q ss_pred CCCccCEEeccCC-cCccc----chhhhcCCCCCCeEeecCCCCCCC----CchhhhcCCCCcEEeecCCCcc-----cc
Q 036017 150 SLTNLEVLDLAHC-KRLNR----LSASICKLKSLSWLRLYNCSKLES----FPGILENMARLEYIDLRLTAIK-----EL 215 (283)
Q Consensus 150 ~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~l~-----~~ 215 (283)
..++|++|++++| .+... +...+...++|++|++++|.+... +...+...++|++|++++|.++ .+
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 6777888888887 55332 334455677788888888776542 2334455667888888887776 24
Q ss_pred chhhhcCCCccEEec--ccccCCC----CCccccCCCcccceeecCCcccc
Q 036017 216 PSSVEHLEGLKELRM--EYCYKLS----KLPDNLGSLRSLKRLHTGKSAIS 260 (283)
Q Consensus 216 ~~~~~~~~~L~~L~l--~~~~~~~----~l~~~~~~l~~L~~L~l~~~~i~ 260 (283)
...+...++|++|++ ++|.... .+...+...++|+.|++++|.++
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 445566677777777 5554332 13333445567777777777665
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.74 E-value=1.1e-06 Score=73.95 Aligned_cols=123 Identities=12% Similarity=0.145 Sum_probs=79.8
Q ss_pred CCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccch-hhhcCCCccEE
Q 036017 150 SLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPS-SVEHLEGLKEL 228 (283)
Q Consensus 150 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~L 228 (283)
.+..|+.+.+... ........+.++.+|+.+.+.. ....--...|.+|.+|+.+++..+ ++.+.. .+..|.+|+.+
T Consensus 263 ~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 263 SCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI 339 (394)
T ss_dssp TCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred ecccccEEecccc-cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence 5677788877653 2233344567889999999864 333223356788999999999754 555544 46789999999
Q ss_pred ecccccCCCCC-ccccCCCcccceeecCCcccccccHHhhccCCCCceeecc
Q 036017 229 RMEYCYKLSKL-PDNLGSLRSLKRLHTGKSAISQLPSSIADLKQVDGLSFYG 279 (283)
Q Consensus 229 ~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~ 279 (283)
.+..+ +..+ ...|..|.+|+.+++.++.... ..+..+.+|+.+.+..
T Consensus 340 ~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 340 AIPSS--VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAP 387 (394)
T ss_dssp EECTT--CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC-------
T ss_pred EECcc--cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCC
Confidence 99763 3333 4568899999999998865431 3455677888887753
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.52 E-value=7.2e-08 Score=70.87 Aligned_cols=85 Identities=14% Similarity=0.131 Sum_probs=47.9
Q ss_pred CCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCC-cc-ccchhhhc----CCCccEEecccccCCCCC-ccccCCCcc
Q 036017 176 KSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTA-IK-ELPSSVEH----LEGLKELRMEYCYKLSKL-PDNLGSLRS 248 (283)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-l~-~~~~~~~~----~~~L~~L~l~~~~~~~~l-~~~~~~l~~ 248 (283)
..|++|++++|.++..-...+..+++|++|++++|. ++ .-...+.. +++|+.|++++|..+++- -..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 357777777776544333445667777777777764 44 11122333 245777777777655321 123445667
Q ss_pred cceeecCCcc-cc
Q 036017 249 LKRLHTGKSA-IS 260 (283)
Q Consensus 249 L~~L~l~~~~-i~ 260 (283)
|+.|++++|. |+
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 7777777653 55
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.50 E-value=2.3e-07 Score=69.56 Aligned_cols=113 Identities=13% Similarity=0.125 Sum_probs=63.2
Q ss_pred hhccCCCCCcEEEecCC-CCcCC----ChhHhhcCCCccCEEeccCCcCccc----chhhhcCCCCCCeEeecCCCCCCC
Q 036017 121 SSIENLNNLSMLRLEGC-KILGP----FPAFISLSLTNLEVLDLAHCKRLNR----LSASICKLKSLSWLRLYNCSKLES 191 (283)
Q Consensus 121 ~~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~ 191 (283)
..+...+.|++|++++| .+... +...+. ..++|++|++++|.+... +...+...++|++|++++|.+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~-~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHH-hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 34455566666666665 44321 112222 445666666666654322 233344456677777766665532
Q ss_pred ----CchhhhcCCCCcEEee--cCCCcc-----ccchhhhcCCCccEEeccccc
Q 036017 192 ----FPGILENMARLEYIDL--RLTAIK-----ELPSSVEHLEGLKELRMEYCY 234 (283)
Q Consensus 192 ----~~~~~~~~~~L~~l~l--~~~~l~-----~~~~~~~~~~~L~~L~l~~~~ 234 (283)
+...+...++|++|++ ++|.++ .+...+...++|++|++++|.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 2334455566777777 667766 244455666777777777764
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.48 E-value=4.8e-05 Score=63.49 Aligned_cols=103 Identities=13% Similarity=0.099 Sum_probs=53.7
Q ss_pred CCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccchh-hhcCCCccEE
Q 036017 150 SLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPSS-VEHLEGLKEL 228 (283)
Q Consensus 150 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~L 228 (283)
.+..|+.+.+..+ +.......+.++.+|+.+.+.. .....-...+.++.+|+.+.+.++.+..+... +..|.+|+.+
T Consensus 238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred CCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence 3444555555432 1111222344555666666543 22211223456667777777766666655443 4666777777
Q ss_pred ecccccCCCCC-ccccCCCcccceeecCC
Q 036017 229 RMEYCYKLSKL-PDNLGSLRSLKRLHTGK 256 (283)
Q Consensus 229 ~l~~~~~~~~l-~~~~~~l~~L~~L~l~~ 256 (283)
.+..+ ++.+ ..+|..|.+|+.+.+..
T Consensus 316 ~lp~~--l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 316 TLPTA--LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp ECCTT--CCEECTTTTTTCTTCCCCCCCT
T ss_pred EcCcc--ccEEHHHHhhCCCCCCEEEECC
Confidence 77542 2222 23466667777776654
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.42 E-value=2.7e-07 Score=67.82 Aligned_cols=85 Identities=13% Similarity=0.196 Sum_probs=53.5
Q ss_pred ccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCC-CchhhhcC----CCCcEEeecCCC-cc--ccchhhhcCCC
Q 036017 153 NLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLES-FPGILENM----ARLEYIDLRLTA-IK--ELPSSVEHLEG 224 (283)
Q Consensus 153 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~----~~L~~l~l~~~~-l~--~~~~~~~~~~~ 224 (283)
.|+.||+++|.+...-...+.++++|++|++++|...+. --..+... ++|++|++++|. ++ .+ ..+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCC
Confidence 567777777664443334456677777777777764443 11333332 467888888764 65 33 34567888
Q ss_pred ccEEecccccCCCC
Q 036017 225 LKELRMEYCYKLSK 238 (283)
Q Consensus 225 L~~L~l~~~~~~~~ 238 (283)
|+.|++++|+.+++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 88888888877754
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.31 E-value=0.00011 Score=61.19 Aligned_cols=125 Identities=12% Similarity=0.111 Sum_probs=78.0
Q ss_pred CCCccCEEeccCCcCcccchhhhcCCCCCCeEeecCCCCCCCCchhhhcCCCCcEEeecCCCccccch-hhhcCCCccEE
Q 036017 150 SLTNLEVLDLAHCKRLNRLSASICKLKSLSWLRLYNCSKLESFPGILENMARLEYIDLRLTAIKELPS-SVEHLEGLKEL 228 (283)
Q Consensus 150 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~L 228 (283)
.+.+++.+.+..+ ........+..+..|+.+.+..+ ...--...+..+.+|+.+.+..+ +..++. .+..+++|+.+
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence 3445555555432 22222334556777777777652 22222245667788888887643 444444 35788999999
Q ss_pred ecccccCCCCCccccCCCcccceeecCCccccccc-HHhhccCCCCceeec
Q 036017 229 RMEYCYKLSKLPDNLGSLRSLKRLHTGKSAISQLP-SSIADLKQVDGLSFY 278 (283)
Q Consensus 229 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~ 278 (283)
.+.++.....-...+..|.+|+.+.+..+ ++.+. ..+.+|++|+++.+.
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 99864433222456788899999998754 66554 467888999988774
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.99 E-value=1.1e-05 Score=63.69 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=20.4
Q ss_pred CCCCCCeEeecCCCCCC--CCchhhhcCCCCcEEeecCCCccc
Q 036017 174 KLKSLSWLRLYNCSKLE--SFPGILENMARLEYIDLRLTAIKE 214 (283)
Q Consensus 174 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~l~~ 214 (283)
.+++|++|++++|.+.+ .++..+..+++|+.|++++|.+..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 34555555555555443 233334455555555555555553
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.98 E-value=6.8e-06 Score=64.84 Aligned_cols=79 Identities=19% Similarity=0.183 Sum_probs=55.1
Q ss_pred hcCCCCcEEeecCCCcccc---chhhhcCCCccEEecccccCCCCCccccCCCc--ccceeecCCcccc-ccc-------
Q 036017 197 ENMARLEYIDLRLTAIKEL---PSSVEHLEGLKELRMEYCYKLSKLPDNLGSLR--SLKRLHTGKSAIS-QLP------- 263 (283)
Q Consensus 197 ~~~~~L~~l~l~~~~l~~~---~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~--~L~~L~l~~~~i~-~~~------- 263 (283)
..+++|+.|++++|.++.+ +..+..+++|+.|++++|...+ + ..+..+. +|+.|++++|.+. .+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4578888888888888744 3556788888888888866543 2 2233333 7888888888886 333
Q ss_pred HHhhccCCCCceee
Q 036017 264 SSIADLKQVDGLSF 277 (283)
Q Consensus 264 ~~~~~~~~L~~L~l 277 (283)
..+..+|+|+.|+=
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 34577888888763
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.64 E-value=0.00011 Score=54.88 Aligned_cols=111 Identities=15% Similarity=0.214 Sum_probs=69.8
Q ss_pred CCCccCEEeccCC-cCcc----cchhhhcCCCCCCeEeecCCCCCCC----CchhhhcCCCCcEEeecCCCcc-----cc
Q 036017 150 SLTNLEVLDLAHC-KRLN----RLSASICKLKSLSWLRLYNCSKLES----FPGILENMARLEYIDLRLTAIK-----EL 215 (283)
Q Consensus 150 ~~~~L~~L~l~~~-~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~l~-----~~ 215 (283)
.-+.|++|+++++ .+.. .+...+..-..|++|++++|.+... +...+..-..|++|+++.|.++ .+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 5567888888875 4322 2344566667788888888777532 3345556677888888888877 34
Q ss_pred chhhhcCCCccEEecccccC--CC-----CCccccCCCcccceeecCCcccc
Q 036017 216 PSSVEHLEGLKELRMEYCYK--LS-----KLPDNLGSLRSLKRLHTGKSAIS 260 (283)
Q Consensus 216 ~~~~~~~~~L~~L~l~~~~~--~~-----~l~~~~~~l~~L~~L~l~~~~i~ 260 (283)
...+..-+.|++|++++|.. ++ .+.+.+..-++|..|+++.+.+.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 44455666788888875432 22 13333444566777777766543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.21 E-value=0.0004 Score=51.89 Aligned_cols=113 Identities=14% Similarity=0.098 Sum_probs=83.8
Q ss_pred chhhhcCCCCCCeEeecCC-CCCCC----CchhhhcCCCCcEEeecCCCcc-----ccchhhhcCCCccEEecccccCCC
Q 036017 168 LSASICKLKSLSWLRLYNC-SKLES----FPGILENMARLEYIDLRLTAIK-----ELPSSVEHLEGLKELRMEYCYKLS 237 (283)
Q Consensus 168 ~~~~l~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~l~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~~ 237 (283)
+...+..-+.|++|+++++ .+... +...+..-..|+.|++++|.++ .+...+..-+.|+.|+|++|....
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3334556788999999885 44321 3345666788999999999998 566667788999999999987552
Q ss_pred ----CCccccCCCcccceeecCCc---ccc-----cccHHhhccCCCCceeeccC
Q 036017 238 ----KLPDNLGSLRSLKRLHTGKS---AIS-----QLPSSIADLKQVDGLSFYGC 280 (283)
Q Consensus 238 ----~l~~~~~~l~~L~~L~l~~~---~i~-----~~~~~~~~~~~L~~L~l~~c 280 (283)
.+.+.+..-..|+.|+++++ .+. .+...+..-+.|++|+++.+
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 34455667778999999865 454 35566778889999998765
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.58 E-value=0.022 Score=39.46 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=40.5
Q ss_pred cEEeecCCCcc--ccchhhhcCCCccEEecccccCCCCCccccCCCcccceeecCCcccc
Q 036017 203 EYIDLRLTAIK--ELPSSVEHLEGLKELRMEYCYKLSKLPDNLGSLRSLKRLHTGKSAIS 260 (283)
Q Consensus 203 ~~l~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~ 260 (283)
..++-+++.++ .+|.. -.++|+.|+|++|.....-+..+..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777777 77754 2346889999987655444455677888999999988775
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.88 E-value=0.067 Score=36.95 Aligned_cols=12 Identities=25% Similarity=0.199 Sum_probs=4.7
Q ss_pred ceEEecCCCCcc
Q 036017 59 LVVLNLPCSNVE 70 (283)
Q Consensus 59 L~~l~l~~~~~~ 70 (283)
|+.|+|++|.+.
T Consensus 33 l~~L~Ls~N~l~ 44 (130)
T 3rfe_A 33 TTELVLTGNNLT 44 (130)
T ss_dssp CSEEECTTSCCS
T ss_pred CCEEECCCCcCC
Confidence 333333333333
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=51.84 E-value=31 Score=22.06 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=17.5
Q ss_pred hhccCCccEEEccCCCCCCCCC--CCCCCCCCcEEeeeC
Q 036017 76 KKEAFKLKSVDLCNSQNLTRMP--DLSETPNLERMYLLN 112 (283)
Q Consensus 76 l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~ 112 (283)
+.+|.+|+.+.+... ++.+. +|.+|.+|+.+.+..
T Consensus 16 F~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 444555555555543 22222 455556666655544
Done!