Query 036018
Match_columns 89
No_of_seqs 120 out of 1548
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 08:36:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036018.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036018hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05022 S-100A13 S-100A13: S-1 99.6 1.3E-14 2.8E-19 74.7 7.0 68 15-82 7-77 (89)
2 PF13499 EF-hand_7: EF-hand do 99.6 3.3E-14 7.1E-19 69.5 7.3 62 17-78 1-66 (66)
3 smart00027 EH Eps15 homology d 99.5 3E-13 6.5E-18 70.7 9.4 73 14-88 8-82 (96)
4 COG5126 FRQ1 Ca2+-binding prot 99.5 1.3E-13 2.9E-18 77.4 8.2 70 10-79 86-155 (160)
5 cd05027 S-100B S-100B: S-100B 99.5 1.8E-13 3.9E-18 70.5 7.9 68 15-82 7-81 (88)
6 KOG0027 Calmodulin and related 99.5 5.9E-13 1.3E-17 74.6 8.1 67 14-80 83-149 (151)
7 cd05025 S-100A1 S-100A1: S-100 99.4 1.7E-12 3.8E-17 67.3 8.1 69 14-82 7-82 (92)
8 cd05026 S-100Z S-100Z: S-100Z 99.4 1.8E-12 3.9E-17 67.4 8.0 68 15-82 9-83 (93)
9 cd05029 S-100A6 S-100A6: S-100 99.4 4.8E-12 1E-16 65.1 8.9 68 16-83 10-82 (88)
10 cd05031 S-100A10_like S-100A10 99.4 3.2E-12 7E-17 66.5 8.1 67 15-81 7-80 (94)
11 cd00052 EH Eps15 homology doma 99.4 6.3E-12 1.4E-16 61.3 7.7 62 19-82 2-63 (67)
12 KOG0027 Calmodulin and related 99.4 5.7E-12 1.2E-16 70.7 8.5 69 14-82 6-74 (151)
13 cd00213 S-100 S-100: S-100 dom 99.3 1.2E-11 2.7E-16 63.5 7.1 67 15-81 7-80 (88)
14 PF13833 EF-hand_8: EF-hand do 99.3 1.7E-11 3.7E-16 57.6 6.6 52 29-80 1-53 (54)
15 cd05023 S-100A11 S-100A11: S-1 99.3 4.1E-11 8.8E-16 61.8 7.8 68 15-82 8-82 (89)
16 cd00051 EFh EF-hand, calcium b 99.3 6.1E-11 1.3E-15 56.2 7.6 61 18-78 2-62 (63)
17 KOG0034 Ca2+/calmodulin-depend 99.2 1.1E-10 2.3E-15 67.5 8.2 65 16-80 104-175 (187)
18 COG5126 FRQ1 Ca2+-binding prot 99.2 1.3E-10 2.9E-15 65.4 8.3 65 16-81 20-84 (160)
19 PTZ00183 centrin; Provisional 99.2 1.7E-10 3.6E-15 64.6 8.8 68 13-80 87-154 (158)
20 cd00252 SPARC_EC SPARC_EC; ext 99.2 2E-10 4.3E-15 61.9 7.9 62 13-78 45-106 (116)
21 PTZ00184 calmodulin; Provision 99.2 2.2E-10 4.9E-15 63.3 8.3 66 14-79 82-147 (149)
22 PTZ00183 centrin; Provisional 99.2 2.6E-10 5.7E-15 63.8 8.6 69 13-81 14-82 (158)
23 KOG0037 Ca2+-binding protein, 99.2 2.3E-10 5E-15 66.7 8.4 66 17-82 125-190 (221)
24 KOG0030 Myosin essential light 99.2 2.9E-10 6.2E-15 62.3 7.5 73 12-84 7-81 (152)
25 KOG0028 Ca2+-binding protein ( 99.2 4.1E-10 8.9E-15 63.0 7.6 68 13-80 103-170 (172)
26 PTZ00184 calmodulin; Provision 99.2 4.4E-10 9.5E-15 62.2 7.9 68 14-81 9-76 (149)
27 KOG0028 Ca2+-binding protein ( 99.1 5.6E-10 1.2E-14 62.4 7.5 71 10-80 27-97 (172)
28 PF14658 EF-hand_9: EF-hand do 99.1 5.2E-10 1.1E-14 54.2 6.5 61 20-80 2-64 (66)
29 cd05030 calgranulins Calgranul 99.1 5.1E-10 1.1E-14 57.6 6.7 69 15-83 7-82 (88)
30 KOG0037 Ca2+-binding protein, 99.1 1.1E-09 2.4E-14 63.9 8.4 72 14-85 55-127 (221)
31 KOG0031 Myosin regulatory ligh 99.1 1.5E-09 3.3E-14 60.4 7.7 73 8-80 93-165 (171)
32 KOG0044 Ca2+ sensor (EF-Hand s 99.0 1.2E-09 2.7E-14 63.3 6.5 67 17-83 65-131 (193)
33 KOG0041 Predicted Ca2+-binding 99.0 3.7E-09 8.1E-14 61.3 7.4 73 11-83 91-166 (244)
34 cd05024 S-100A10 S-100A10: A s 99.0 1E-08 2.2E-13 52.8 8.0 67 15-82 7-78 (91)
35 PLN02964 phosphatidylserine de 98.9 2.1E-08 4.5E-13 67.1 8.9 63 18-80 181-243 (644)
36 PF14788 EF-hand_10: EF hand; 98.9 1.3E-08 2.9E-13 46.8 5.7 51 32-82 1-51 (51)
37 KOG0030 Myosin essential light 98.8 4.7E-08 1E-12 53.7 7.0 68 10-78 82-149 (152)
38 PF00036 EF-hand_1: EF hand; 98.8 2E-08 4.2E-13 41.4 3.7 26 18-43 2-27 (29)
39 PF00036 EF-hand_1: EF hand; 98.8 1.7E-08 3.6E-13 41.6 3.3 29 53-81 1-29 (29)
40 PF12763 EF-hand_4: Cytoskelet 98.7 2.5E-07 5.4E-12 49.0 8.2 68 12-82 6-73 (104)
41 KOG0031 Myosin regulatory ligh 98.7 2.5E-07 5.4E-12 51.7 8.0 66 15-80 31-129 (171)
42 KOG0036 Predicted mitochondria 98.7 1.2E-07 2.5E-12 60.2 6.9 65 15-79 81-145 (463)
43 KOG0044 Ca2+ sensor (EF-Hand s 98.6 6.6E-07 1.4E-11 52.1 8.8 72 10-81 20-93 (193)
44 PRK12309 transaldolase/EF-hand 98.6 2.8E-07 6.1E-12 58.8 7.3 57 13-82 331-387 (391)
45 KOG0036 Predicted mitochondria 98.6 5E-07 1.1E-11 57.5 7.8 68 13-80 11-79 (463)
46 PLN02964 phosphatidylserine de 98.6 4.4E-07 9.6E-12 60.9 8.0 62 16-81 143-208 (644)
47 PF13405 EF-hand_6: EF-hand do 98.6 1.8E-07 3.8E-12 39.0 3.8 27 17-43 1-27 (31)
48 KOG0038 Ca2+-binding kinase in 98.5 4.5E-07 9.8E-12 50.4 5.2 64 19-82 111-179 (189)
49 KOG0034 Ca2+/calmodulin-depend 98.4 4.1E-06 8.9E-11 48.7 7.6 64 19-82 69-134 (187)
50 KOG0377 Protein serine/threoni 98.4 3.9E-06 8.5E-11 54.2 7.8 65 18-82 549-617 (631)
51 PF13202 EF-hand_5: EF hand; P 98.3 1.5E-06 3.4E-11 34.4 3.2 22 19-40 2-23 (25)
52 PF10591 SPARC_Ca_bdg: Secrete 98.2 8.2E-07 1.8E-11 47.7 2.0 60 15-76 53-112 (113)
53 PF13202 EF-hand_5: EF hand; P 98.2 3.8E-06 8.3E-11 33.2 3.1 25 54-78 1-25 (25)
54 KOG4223 Reticulocalbin, calume 98.1 5E-06 1.1E-10 51.5 4.5 72 8-79 69-140 (325)
55 KOG0046 Ca2+-binding actin-bun 98.1 4.1E-05 8.9E-10 50.4 8.4 73 9-82 9-87 (627)
56 PF13405 EF-hand_6: EF-hand do 98.1 6.9E-06 1.5E-10 34.0 3.1 28 53-80 1-28 (31)
57 KOG4251 Calcium binding protei 98.1 3E-06 6.6E-11 51.0 2.5 68 13-80 98-168 (362)
58 KOG0040 Ca2+-binding actin-bun 98.0 3.9E-05 8.5E-10 55.7 6.6 70 11-80 2245-2324(2399)
59 KOG4223 Reticulocalbin, calume 97.9 1.9E-05 4.1E-10 49.0 4.3 61 19-79 244-304 (325)
60 KOG0377 Protein serine/threoni 97.9 0.00016 3.4E-09 47.1 7.7 68 17-84 465-579 (631)
61 PF13833 EF-hand_8: EF-hand do 97.8 0.0001 2.2E-09 34.2 4.4 32 13-44 22-53 (54)
62 KOG0038 Ca2+-binding kinase in 97.7 0.00013 2.7E-09 40.9 4.6 65 19-83 74-139 (189)
63 smart00054 EFh EF-hand, calciu 97.5 0.00013 2.7E-09 28.6 2.6 23 56-78 4-26 (29)
64 smart00054 EFh EF-hand, calciu 97.5 0.0002 4.4E-09 27.9 3.1 27 18-44 2-28 (29)
65 PF09279 EF-hand_like: Phospho 97.5 0.00065 1.4E-08 34.3 5.3 63 17-80 1-69 (83)
66 KOG1955 Ral-GTPase effector RA 97.5 0.00034 7.3E-09 46.1 5.0 68 18-87 233-302 (737)
67 KOG2643 Ca2+ binding protein, 97.5 0.00035 7.7E-09 45.2 5.0 65 18-82 235-316 (489)
68 KOG4065 Uncharacterized conser 97.3 0.0037 8E-08 33.8 6.9 67 11-77 61-142 (144)
69 KOG4666 Predicted phosphate ac 97.2 0.0011 2.3E-08 41.7 4.6 70 10-80 290-359 (412)
70 PF13499 EF-hand_7: EF-hand do 97.1 0.00086 1.9E-08 32.2 3.3 29 54-82 2-30 (66)
71 KOG2643 Ca2+ binding protein, 97.1 0.00041 9E-09 44.9 2.3 55 26-82 209-263 (489)
72 KOG1029 Endocytic adaptor prot 97.0 0.0042 9E-08 43.2 6.2 64 17-82 196-259 (1118)
73 PF05517 p25-alpha: p25-alpha 96.8 0.025 5.5E-07 32.0 7.7 64 19-82 2-71 (154)
74 cd05023 S-100A11 S-100A11: S-1 96.8 0.0034 7.4E-08 32.3 3.8 35 11-45 47-81 (89)
75 KOG2243 Ca2+ release channel ( 96.7 0.0051 1.1E-07 45.7 5.1 59 20-79 4061-4119(5019)
76 KOG3555 Ca2+-binding proteogly 96.7 0.0045 9.7E-08 39.3 4.3 64 12-79 246-309 (434)
77 KOG0169 Phosphoinositide-speci 96.5 0.01 2.2E-07 41.0 5.6 67 15-81 135-201 (746)
78 cd05026 S-100Z S-100Z: S-100Z 96.5 0.0098 2.1E-07 30.8 4.4 33 13-45 50-82 (93)
79 cd05029 S-100A6 S-100A6: S-100 96.5 0.01 2.2E-07 30.5 4.4 35 11-45 46-80 (88)
80 cd05022 S-100A13 S-100A13: S-1 96.4 0.0085 1.9E-07 30.9 3.8 30 16-45 47-76 (89)
81 KOG1707 Predicted Ras related/ 96.3 0.01 2.3E-07 40.0 4.6 76 5-82 301-379 (625)
82 cd05024 S-100A10 S-100A10: A s 96.3 0.0091 2E-07 30.9 3.4 35 11-45 43-77 (91)
83 PF14788 EF-hand_10: EF hand; 96.2 0.018 3.9E-07 26.6 3.9 33 12-44 17-49 (51)
84 cd00252 SPARC_EC SPARC_EC; ext 96.2 0.012 2.6E-07 31.8 3.8 29 15-43 79-107 (116)
85 cd05025 S-100A1 S-100A1: S-100 96.2 0.017 3.7E-07 29.6 4.2 33 13-45 49-81 (92)
86 PF05042 Caleosin: Caleosin re 96.1 0.065 1.4E-06 31.0 6.7 63 18-80 9-124 (174)
87 cd05030 calgranulins Calgranul 96.1 0.02 4.3E-07 29.3 4.3 33 13-45 48-80 (88)
88 cd00052 EH Eps15 homology doma 96.1 0.02 4.4E-07 27.2 4.0 32 13-44 30-61 (67)
89 cd00051 EFh EF-hand, calcium b 96.0 0.02 4.3E-07 26.1 3.7 28 54-81 2-29 (63)
90 KOG1707 Predicted Ras related/ 96.0 0.061 1.3E-06 36.6 6.9 34 8-41 187-220 (625)
91 KOG0042 Glycerol-3-phosphate d 96.0 0.03 6.5E-07 37.9 5.4 65 18-82 595-659 (680)
92 cd05031 S-100A10_like S-100A10 96.0 0.018 3.9E-07 29.7 3.7 34 12-45 47-80 (94)
93 cd05027 S-100B S-100B: S-100B 96.0 0.028 6E-07 28.8 4.3 34 12-45 47-80 (88)
94 PF12763 EF-hand_4: Cytoskelet 95.9 0.027 5.9E-07 29.9 4.3 34 11-44 38-71 (104)
95 KOG2562 Protein phosphatase 2 95.9 0.031 6.7E-07 36.8 5.2 50 30-79 329-378 (493)
96 smart00027 EH Eps15 homology d 95.8 0.023 5E-07 29.4 3.8 32 13-44 41-72 (96)
97 KOG0751 Mitochondrial aspartat 95.6 0.036 7.9E-07 37.1 4.8 63 18-80 110-207 (694)
98 KOG3866 DNA-binding protein of 95.6 0.029 6.3E-07 35.4 4.0 59 20-78 248-322 (442)
99 KOG0751 Mitochondrial aspartat 95.5 0.096 2.1E-06 35.2 6.4 63 18-82 75-138 (694)
100 cd00213 S-100 S-100: S-100 dom 95.5 0.038 8.1E-07 28.0 3.7 29 52-80 8-38 (88)
101 KOG4666 Predicted phosphate ac 95.4 0.081 1.8E-06 33.7 5.5 66 16-81 259-325 (412)
102 KOG4251 Calcium binding protei 95.3 0.085 1.8E-06 32.4 5.3 57 20-76 284-341 (362)
103 PF05042 Caleosin: Caleosin re 95.3 0.26 5.6E-06 28.6 7.0 68 10-78 90-164 (174)
104 KOG4578 Uncharacterized conser 95.0 0.022 4.7E-07 36.2 2.3 62 17-80 334-398 (421)
105 PF14658 EF-hand_9: EF-hand do 94.8 0.13 2.8E-06 25.1 4.3 33 12-44 31-64 (66)
106 PF08414 NADPH_Ox: Respiratory 94.8 0.12 2.6E-06 27.2 4.3 63 17-84 31-96 (100)
107 KOG0035 Ca2+-binding actin-bun 94.5 0.25 5.4E-06 35.3 6.4 66 15-80 746-816 (890)
108 PF09069 EF-hand_3: EF-hand; 94.1 0.4 8.7E-06 24.8 7.3 63 15-80 2-75 (90)
109 KOG1029 Endocytic adaptor prot 94.0 0.87 1.9E-05 32.5 8.2 71 16-88 13-87 (1118)
110 KOG4347 GTPase-activating prot 93.8 0.11 2.4E-06 35.7 3.7 56 17-73 556-611 (671)
111 PLN02228 Phosphoinositide phos 93.6 1.1 2.4E-05 30.7 8.1 71 8-80 16-92 (567)
112 PLN02222 phosphoinositide phos 93.4 0.9 2E-05 31.3 7.4 71 8-80 17-90 (581)
113 PF02761 Cbl_N2: CBL proto-onc 92.4 0.84 1.8E-05 23.4 5.7 55 30-84 20-74 (85)
114 PLN02230 phosphoinositide phos 92.3 2 4.4E-05 29.8 7.9 70 10-80 23-102 (598)
115 KOG2562 Protein phosphatase 2 91.5 0.71 1.5E-05 30.8 4.9 62 19-81 142-203 (493)
116 PRK12309 transaldolase/EF-hand 91.3 0.35 7.7E-06 31.6 3.5 26 19-44 360-385 (391)
117 PF08726 EFhand_Ca_insen: Ca2+ 90.3 0.5 1.1E-05 23.2 2.8 30 13-43 3-32 (69)
118 PF09373 PMBR: Pseudomurein-bi 90.0 0.61 1.3E-05 19.4 2.6 19 66-84 2-20 (33)
119 KOG0041 Predicted Ca2+-binding 90.0 0.71 1.5E-05 27.6 3.6 29 53-81 100-128 (244)
120 PF08976 DUF1880: Domain of un 89.6 0.43 9.4E-06 25.9 2.4 31 49-79 4-34 (118)
121 PF10591 SPARC_Ca_bdg: Secrete 89.5 0.62 1.3E-05 25.0 3.0 23 18-40 90-112 (113)
122 PLN02952 phosphoinositide phos 89.4 2.2 4.9E-05 29.6 6.1 53 29-82 13-67 (599)
123 PLN02223 phosphoinositide phos 87.1 7.8 0.00017 26.7 8.2 71 9-80 9-92 (537)
124 KOG0998 Synaptic vesicle prote 86.9 0.33 7.3E-06 34.7 1.1 67 14-82 281-347 (847)
125 KOG3449 60S acidic ribosomal p 85.5 4.1 8.9E-05 21.9 6.5 52 20-76 5-56 (112)
126 PF12174 RST: RCD1-SRO-TAF4 (R 85.0 1.4 3.1E-05 21.7 2.5 33 49-81 22-54 (70)
127 PF01023 S_100: S-100/ICaBP ty 83.0 3.1 6.6E-05 18.5 3.8 29 16-44 6-36 (44)
128 KOG1955 Ral-GTPase effector RA 83.0 2 4.3E-05 29.3 3.2 36 10-45 259-294 (737)
129 KOG0040 Ca2+-binding actin-bun 82.8 6.9 0.00015 30.6 6.0 58 16-74 2296-2355(2399)
130 PLN02952 phosphoinositide phos 81.4 16 0.00034 25.6 8.1 65 14-79 36-109 (599)
131 PF14513 DAG_kinase_N: Diacylg 81.0 2.1 4.5E-05 24.0 2.5 48 31-80 6-60 (138)
132 KOG2871 Uncharacterized conser 78.4 3.3 7.2E-05 27.2 3.0 36 11-46 304-339 (449)
133 cd07313 terB_like_2 tellurium 75.5 7.8 0.00017 20.0 3.6 50 30-79 13-64 (104)
134 KOG4004 Matricellular protein 73.4 1.7 3.7E-05 26.1 0.8 47 30-78 202-248 (259)
135 KOG0169 Phosphoinositide-speci 72.8 32 0.0007 24.8 6.7 66 12-81 168-233 (746)
136 PF00404 Dockerin_1: Dockerin 69.1 5.9 0.00013 14.7 2.7 13 27-39 2-14 (21)
137 KOG4347 GTPase-activating prot 68.6 14 0.00031 26.1 4.3 50 33-82 535-585 (671)
138 KOG0998 Synaptic vesicle prote 67.1 6.2 0.00013 28.7 2.5 66 15-82 10-75 (847)
139 KOG1265 Phospholipase C [Lipid 66.9 52 0.0011 24.7 6.9 64 16-79 221-298 (1189)
140 PHA00003 B internal scaffoldin 64.6 14 0.0003 19.9 2.9 41 45-86 78-119 (120)
141 PF07308 DUF1456: Protein of u 64.1 16 0.00035 17.9 6.0 48 34-81 15-62 (68)
142 PF08461 HTH_12: Ribonuclease 60.3 19 0.00041 17.3 3.1 36 30-65 11-46 (66)
143 PF08355 EF_assoc_1: EF hand a 59.6 15 0.00033 18.3 2.5 22 61-82 11-32 (76)
144 PF03672 UPF0154: Uncharacteri 58.5 21 0.00045 17.3 3.8 32 30-61 29-60 (64)
145 KOG1954 Endocytosis/signaling 58.3 44 0.00096 22.5 5.0 56 19-77 447-502 (532)
146 PF09068 EF-hand_2: EF hand; 57.7 25 0.00053 19.4 3.4 20 57-76 102-121 (127)
147 PRK00523 hypothetical protein; 57.7 23 0.0005 17.6 3.7 32 30-61 37-68 (72)
148 KOG1785 Tyrosine kinase negati 56.4 22 0.00048 23.8 3.4 51 30-80 188-238 (563)
149 COG3763 Uncharacterized protei 55.8 25 0.00054 17.4 3.7 32 30-61 36-67 (71)
150 PF11829 DUF3349: Protein of u 55.5 30 0.00065 18.2 3.7 50 12-61 35-85 (96)
151 TIGR01848 PHA_reg_PhaR polyhyd 55.0 33 0.00071 18.5 5.3 49 24-72 11-69 (107)
152 KOG4578 Uncharacterized conser 54.0 9.1 0.0002 24.9 1.4 26 19-44 373-398 (421)
153 PF11593 Med3: Mediator comple 52.3 63 0.0014 21.4 4.9 14 68-81 42-55 (379)
154 KOG4286 Dystrophin-like protei 51.5 46 0.001 24.4 4.5 50 19-68 473-522 (966)
155 PHA02105 hypothetical protein 51.4 27 0.0006 16.6 3.2 50 32-81 4-58 (68)
156 TIGR01639 P_fal_TIGR01639 Plas 51.3 27 0.00059 16.5 5.0 30 32-61 9-38 (61)
157 KOG2301 Voltage-gated Ca2+ cha 51.2 19 0.00042 28.3 2.8 66 13-79 1414-1483(1592)
158 PF01885 PTS_2-RNA: RNA 2'-pho 51.0 48 0.001 19.5 4.0 37 27-63 27-63 (186)
159 KOG0039 Ferric reductase, NADH 50.9 51 0.0011 23.4 4.7 66 13-79 15-88 (646)
160 PF14178 YppF: YppF-like prote 50.7 29 0.00063 16.6 2.5 19 66-84 34-52 (60)
161 COG0848 ExbD Biopolymer transp 50.7 25 0.00055 19.6 2.7 24 64-87 103-126 (137)
162 PF02375 JmjN: jmjN domain; I 49.6 17 0.00037 15.2 1.5 15 71-85 10-24 (34)
163 KOG4403 Cell surface glycoprot 49.3 84 0.0018 21.5 5.9 65 12-80 64-129 (575)
164 PRK01844 hypothetical protein; 48.7 35 0.00076 17.0 3.7 31 31-61 37-67 (72)
165 PF01397 Terpene_synth: Terpen 46.9 59 0.0013 19.1 5.3 58 31-88 45-107 (183)
166 PF11020 DUF2610: Domain of un 44.9 44 0.00095 17.0 3.5 36 46-81 43-78 (82)
167 KOG3555 Ca2+-binding proteogly 43.5 45 0.00097 22.1 3.3 62 18-79 213-277 (434)
168 PRK00819 RNA 2'-phosphotransfe 43.5 68 0.0015 18.9 4.4 36 27-62 28-63 (179)
169 PF07879 PHB_acc_N: PHB/PHA ac 43.1 42 0.00091 16.3 3.5 21 24-44 11-31 (64)
170 PF08708 PriCT_1: Primase C te 41.8 43 0.00092 16.0 4.4 33 54-86 38-70 (71)
171 KOG4301 Beta-dystrobrevin [Cyt 41.2 79 0.0017 20.9 4.1 60 19-79 113-172 (434)
172 cd06403 PB1_Par6 The PB1 domai 40.8 17 0.00037 18.5 1.0 24 60-83 13-36 (80)
173 TIGR03573 WbuX N-acetyl sugar 39.1 1.1E+02 0.0023 19.8 5.3 14 48-61 302-315 (343)
174 COG5562 Phage envelope protein 38.7 29 0.00062 19.5 1.7 22 59-80 79-100 (137)
175 KOG4070 Putative signal transd 38.1 83 0.0018 18.3 3.8 35 48-82 53-87 (180)
176 PF09336 Vps4_C: Vps4 C termin 37.9 50 0.0011 15.7 2.6 24 32-55 29-52 (62)
177 PF07492 Trehalase_Ca-bi: Neut 37.2 7.1 0.00015 15.9 -0.6 16 57-72 4-19 (30)
178 KOG0506 Glutaminase (contains 37.1 1.5E+02 0.0032 20.8 5.3 59 20-78 90-156 (622)
179 PF03979 Sigma70_r1_1: Sigma-7 37.1 58 0.0013 16.2 2.9 44 16-63 7-50 (82)
180 PF02240 MCR_gamma: Methyl-coe 36.4 55 0.0012 20.0 2.7 42 46-87 201-246 (247)
181 cd08315 Death_TRAILR_DR4_DR5 D 36.1 68 0.0015 16.7 4.5 38 14-57 2-39 (96)
182 COG1244 Predicted Fe-S oxidore 34.4 51 0.0011 21.6 2.5 22 68-89 186-207 (358)
183 PF07624 PSD2: Protein of unkn 34.3 64 0.0014 15.9 4.7 13 32-44 6-18 (76)
184 KOG0046 Ca2+-binding actin-bun 33.9 85 0.0018 22.1 3.6 35 11-45 52-86 (627)
185 KOG0039 Ferric reductase, NADH 33.6 1.4E+02 0.0031 21.3 4.8 46 30-82 2-47 (646)
186 cd08785 CARD_CARD9-like Caspas 33.2 74 0.0016 16.3 4.0 53 30-84 28-80 (86)
187 PF09454 Vps23_core: Vps23 cor 32.6 54 0.0012 15.8 2.0 17 66-82 37-53 (65)
188 PLN02230 phosphoinositide phos 32.5 93 0.002 22.1 3.7 32 50-82 27-58 (598)
189 PF10841 DUF2644: Protein of u 32.5 62 0.0013 15.5 2.1 20 63-82 5-24 (60)
190 PF06648 DUF1160: Protein of u 32.0 95 0.0021 17.2 4.4 43 16-61 37-80 (122)
191 PF05099 TerB: Tellurite resis 31.7 23 0.00049 19.2 0.7 47 29-75 36-84 (140)
192 PRK09430 djlA Dna-J like membr 31.6 1.3E+02 0.0029 18.8 4.9 49 28-80 67-120 (267)
193 KOG1264 Phospholipase C [Lipid 31.6 80 0.0017 23.7 3.3 56 25-81 153-209 (1267)
194 PF10437 Lip_prot_lig_C: Bacte 31.4 75 0.0016 15.8 4.1 43 34-78 43-86 (86)
195 PF15144 DUF4576: Domain of un 31.0 19 0.00042 18.2 0.3 40 30-70 38-77 (88)
196 PF09808 SNAPc_SNAP43: Small n 30.5 1.1E+02 0.0023 18.0 3.3 14 67-80 17-30 (194)
197 cd01424 MGS_CPS_II Methylglyox 30.2 56 0.0012 17.0 2.0 19 71-89 12-30 (110)
198 COG1654 BirA Biotin operon rep 30.0 83 0.0018 15.9 2.6 14 30-43 17-30 (79)
199 PRK14074 rpsF 30S ribosomal pr 29.3 1.5E+02 0.0032 18.6 3.8 77 1-80 1-81 (257)
200 PF10256 Erf4: Golgin subfamil 29.0 84 0.0018 16.7 2.6 19 66-84 27-45 (118)
201 PF04971 Lysis_S: Lysis protei 28.8 52 0.0011 16.2 1.5 16 74-89 43-58 (68)
202 KOG3442 Uncharacterized conser 28.0 1.2E+02 0.0026 17.0 3.7 39 30-69 53-95 (132)
203 PF00797 Acetyltransf_2: N-ace 27.7 1.3E+02 0.0028 18.0 3.5 37 53-89 32-68 (240)
204 PF12740 Chlorophyllase2: Chlo 27.3 87 0.0019 19.7 2.7 20 69-88 28-47 (259)
205 COG3383 Uncharacterized anaero 27.2 1.9E+02 0.0041 21.7 4.4 48 14-61 712-759 (978)
206 COG1448 TyrB Aspartate/tyrosin 27.2 87 0.0019 21.0 2.7 55 22-82 147-202 (396)
207 PF02304 Phage_B: Scaffold pro 27.1 10 0.00022 20.4 -1.2 31 55-86 85-116 (117)
208 PF07574 SMC_Nse1: Nse1 non-SM 26.7 74 0.0016 18.8 2.2 21 69-89 44-65 (200)
209 PTZ00338 dimethyladenosine tra 26.6 1.8E+02 0.0038 18.5 4.3 35 53-87 256-292 (294)
210 TIGR02801 tolR TolR protein. T 26.3 1.1E+02 0.0025 16.4 2.8 23 65-87 100-122 (129)
211 PF12588 PSDC: Phophatidylseri 26.2 1.3E+02 0.0029 17.0 4.6 13 70-82 44-56 (141)
212 PHA00649 hypothetical protein 26.1 97 0.0021 15.3 4.0 22 18-39 19-40 (83)
213 cd07176 terB tellurite resista 25.8 51 0.0011 16.9 1.4 13 30-42 16-28 (111)
214 PF10891 DUF2719: Protein of u 25.6 94 0.002 15.8 2.1 18 65-82 32-49 (81)
215 PF04444 Dioxygenase_N: Catech 25.4 77 0.0017 15.8 1.8 18 68-85 23-40 (74)
216 COG1565 Uncharacterized conser 25.3 43 0.00093 22.2 1.1 23 64-86 13-35 (370)
217 TIGR03849 arch_ComA phosphosul 24.6 1.3E+02 0.0028 18.7 3.0 26 64-89 92-117 (237)
218 COG3747 Phage terminase, small 24.5 76 0.0016 18.3 1.9 20 69-88 78-97 (160)
219 cd08330 CARD_ASC_NALP1 Caspase 24.5 1.1E+02 0.0024 15.4 4.5 50 30-84 27-76 (82)
220 COG4103 Uncharacterized protei 24.1 1.5E+02 0.0033 16.9 4.5 57 20-79 34-93 (148)
221 PF07283 TrbH: Conjugal transf 24.1 66 0.0014 17.7 1.6 17 72-88 35-52 (121)
222 PLN03138 Protein TOC75; Provis 24.0 3.1E+02 0.0068 20.5 6.3 34 49-84 280-313 (796)
223 PTZ00373 60S Acidic ribosomal 23.8 1.4E+02 0.003 16.3 5.4 41 21-61 8-48 (112)
224 PRK10867 signal recognition pa 23.6 1.8E+02 0.0038 19.8 3.7 19 66-84 325-343 (433)
225 PRK13835 conjugal transfer pro 23.5 66 0.0014 18.4 1.5 17 72-88 68-85 (145)
226 COG0541 Ffh Signal recognition 23.4 1.5E+02 0.0033 20.3 3.4 32 50-84 311-342 (451)
227 KOG2725 Cytochrome oxidase ass 23.3 2.3E+02 0.005 19.0 4.0 36 8-43 107-147 (411)
228 PF02472 ExbD: Biopolymer tran 23.2 1.3E+02 0.0028 16.0 2.7 23 65-87 99-121 (130)
229 PF07499 RuvA_C: RuvA, C-termi 22.8 89 0.0019 13.7 4.1 36 36-75 4-39 (47)
230 cd00539 MCR_gamma Methyl-coenz 22.4 1.6E+02 0.0034 18.1 3.0 43 45-87 199-245 (246)
231 PRK11024 colicin uptake protei 22.3 1.5E+02 0.0034 16.3 2.9 23 65-87 110-132 (141)
232 TIGR01425 SRP54_euk signal rec 22.1 1.6E+02 0.0035 20.0 3.3 19 66-84 324-342 (429)
233 cd06404 PB1_aPKC PB1 domain is 21.5 1.2E+02 0.0026 15.6 2.1 13 33-45 56-68 (83)
234 TIGR00959 ffh signal recogniti 21.5 2.1E+02 0.0045 19.4 3.7 31 51-84 312-342 (428)
235 cd01423 MGS_CPS_I_III Methylgl 21.4 82 0.0018 16.6 1.6 20 70-89 11-30 (116)
236 PF13829 DUF4191: Domain of un 21.1 2.2E+02 0.0047 17.6 4.4 35 27-61 162-196 (224)
237 PF08044 DUF1707: Domain of un 21.1 1.1E+02 0.0023 14.1 2.7 29 30-58 21-49 (53)
238 PF05678 VQ: VQ motif; InterP 21.0 84 0.0018 12.8 1.9 13 70-82 11-23 (31)
239 PF14423 Imm5: Immunity protei 20.8 2E+02 0.0044 17.1 3.3 29 19-47 4-32 (183)
240 PRK00771 signal recognition pa 20.7 2.1E+02 0.0047 19.4 3.7 20 66-85 317-336 (437)
241 COG2818 Tag 3-methyladenine DN 20.7 1.3E+02 0.0028 18.0 2.4 30 18-47 57-86 (188)
242 TIGR03259 met_CoM_red_gam meth 20.3 1.8E+02 0.004 17.9 3.0 38 45-82 199-236 (244)
243 PF09820 AAA-ATPase_like: Pred 20.0 1.4E+02 0.0031 18.7 2.6 37 48-87 224-262 (284)
244 PF12419 DUF3670: SNF2 Helicas 20.0 1.8E+02 0.0039 16.2 5.2 49 29-77 80-138 (141)
No 1
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.59 E-value=1.3e-14 Score=74.73 Aligned_cols=68 Identities=16% Similarity=0.158 Sum_probs=62.1
Q ss_pred HHHHHHHHHhhcC-CCCCcccHHHHHHHHHh-cCCCCCH-HHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 15 EDHMKVLLKRYDK-DGDGRLSKKELQAAFRN-SGLHFSG-FRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 15 ~~~~~~~f~~~d~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
...+..+|+.||. +++|.|+..|++.++.. ++..++. .+++.++..+|.+++|+|+|+||..++..+.
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 4567899999999 99999999999999998 7766777 8999999999999999999999999998875
No 2
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.57 E-value=3.3e-14 Score=69.47 Aligned_cols=62 Identities=34% Similarity=0.546 Sum_probs=53.8
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCH----HHHHHHHHhhCCCCCCcccHHHHHHHH
Q 036018 17 HMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSG----FRARRALHHADSNHDGFIGNDEMKELV 78 (89)
Q Consensus 17 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~----~~~~~~~~~~d~~~~g~i~~~ef~~~~ 78 (89)
+++.+|..+|.+++|+|+.+|+..++..++...+. ..++.+|..+|.+++|.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47889999999999999999999999998765544 445666999999999999999999875
No 3
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.53 E-value=3e-13 Score=70.67 Aligned_cols=73 Identities=19% Similarity=0.345 Sum_probs=64.8
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHh--Cccc
Q 036018 14 SEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARW--GFTV 88 (89)
Q Consensus 14 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~--~~~~ 88 (89)
....+..+|..+|.+++|.|+..+++.+++..+ ++.+++..++..++.+++|.|++++|+.++..+.++ |++|
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~ 82 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPI 82 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCC
Confidence 345688999999999999999999999998854 788899999999999999999999999999988744 7765
No 4
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.53 E-value=1.3e-13 Score=77.41 Aligned_cols=70 Identities=29% Similarity=0.426 Sum_probs=65.6
Q ss_pred CcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 036018 10 SIALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVI 79 (89)
Q Consensus 10 ~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 79 (89)
......+++..+|+.||.|++|+|+..++..++..++..++.++++.++..++.+++|.|++++|+..+.
T Consensus 86 ~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 86 KRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred ccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 3556688999999999999999999999999999999999999999999999999999999999998774
No 5
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.52 E-value=1.8e-13 Score=70.45 Aligned_cols=68 Identities=21% Similarity=0.258 Sum_probs=62.0
Q ss_pred HHHHHHHHHhhc-CCCCC-cccHHHHHHHHHh-----cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 15 EDHMKVLLKRYD-KDGDG-RLSKKELQAAFRN-----SGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 15 ~~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
...+..+|..|| .+++| .|+..+++.+++. ++...+..+++.+++.+|.+++|+|+|++|+.++..+.
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 456889999998 79999 5999999999998 78888899999999999999999999999999998765
No 6
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.47 E-value=5.9e-13 Score=74.63 Aligned_cols=67 Identities=24% Similarity=0.438 Sum_probs=63.3
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 036018 14 SEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIY 80 (89)
Q Consensus 14 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 80 (89)
..++++.+|+.||.+++|+|+..+++.++..++...+.+++..+++.+|.+++|.|+|++|+.++..
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 5678999999999999999999999999999999999999999999999999999999999998753
No 7
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.44 E-value=1.7e-12 Score=67.28 Aligned_cols=69 Identities=23% Similarity=0.298 Sum_probs=60.3
Q ss_pred CHHHHHHHHHhhc-CCCCC-cccHHHHHHHHHh-cC----CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 14 SEDHMKVLLKRYD-KDGDG-RLSKKELQAAFRN-SG----LHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 14 ~~~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
..+.+.++|..|| .+++| .|+..|++.+++. ++ ..++...++.++..+|.+++|.|+|++|+.++..+.
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 4567899999996 99999 5999999999975 33 346788999999999999999999999999998775
No 8
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.44 E-value=1.8e-12 Score=67.41 Aligned_cols=68 Identities=25% Similarity=0.352 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhc-CCCCC-cccHHHHHHHHHh-c----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 15 EDHMKVLLKRYD-KDGDG-RLSKKELQAAFRN-S----GLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 15 ~~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
...+.++|..|| .|++| .|+..||+.++.. . ....+...++.++..+|.+++|.|+|+||+.++..+.
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 345778899998 78998 5999999999966 2 3334778899999999999999999999999998875
No 9
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.42 E-value=4.8e-12 Score=65.15 Aligned_cols=68 Identities=21% Similarity=0.307 Sum_probs=60.2
Q ss_pred HHHHHHHHhhcC-CC-CCcccHHHHHHHHHh---cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH
Q 036018 16 DHMKVLLKRYDK-DG-DGRLSKKELQAAFRN---SGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAAR 83 (89)
Q Consensus 16 ~~~~~~f~~~d~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 83 (89)
..+..+|..|+. ++ +|.|+.+||+.++.. ++..++.+++..+++..|.+++|+|+|+||+.++..+..
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~ 82 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALAL 82 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 346789999987 66 899999999999963 577889999999999999999999999999999988763
No 10
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.42 E-value=3.2e-12 Score=66.52 Aligned_cols=67 Identities=24% Similarity=0.356 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhcC-CC-CCcccHHHHHHHHHh-----cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 036018 15 EDHMKVLLKRYDK-DG-DGRLSKKELQAAFRN-----SGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYA 81 (89)
Q Consensus 15 ~~~~~~~f~~~d~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 81 (89)
...+..+|..||. ++ +|.|+..|++.++.. ++..++..+++.++..+|.+++|.|+|++|+.++..+
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4568899999987 87 699999999999875 3556788999999999999999999999999998754
No 11
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.39 E-value=6.3e-12 Score=61.25 Aligned_cols=62 Identities=24% Similarity=0.371 Sum_probs=56.0
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 19 KVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 19 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
+.+|..+|.+++|.|+..|+..++...+ .+.+.++.++..++.+++|.|++++|+.++..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 5689999999999999999999998865 4888899999999999999999999999987654
No 12
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.39 E-value=5.7e-12 Score=70.68 Aligned_cols=69 Identities=29% Similarity=0.398 Sum_probs=64.6
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 14 SEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 14 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
...++..+|..||.+++|+|+..++..+++.++..++..++..++...|.+++|.|++++|+.++....
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~ 74 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLG 74 (151)
T ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhh
Confidence 456789999999999999999999999999999999999999999999999999999999999997653
No 13
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.34 E-value=1.2e-11 Score=63.54 Aligned_cols=67 Identities=19% Similarity=0.209 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhcC--CCCCcccHHHHHHHHHh-cCCC----CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 036018 15 EDHMKVLLKRYDK--DGDGRLSKKELQAAFRN-SGLH----FSGFRARRALHHADSNHDGFIGNDEMKELVIYA 81 (89)
Q Consensus 15 ~~~~~~~f~~~d~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 81 (89)
.+.+..+|..+|. +++|.|+..++..++.. ++.. .+...+..++..++.+++|.|++++|+.++...
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4568889999999 89999999999999975 3432 458899999999999999999999999998765
No 14
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.32 E-value=1.7e-11 Score=57.58 Aligned_cols=52 Identities=25% Similarity=0.500 Sum_probs=48.3
Q ss_pred CCCcccHHHHHHHHHhcCCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 036018 29 GDGRLSKKELQAAFRNSGLH-FSGFRARRALHHADSNHDGFIGNDEMKELVIY 80 (89)
Q Consensus 29 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 80 (89)
.+|.|+.++|..++..++.. ++..+++.+|..+|.+++|.|+++||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 37999999999999878888 99999999999999999999999999999865
No 15
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.30 E-value=4.1e-11 Score=61.82 Aligned_cols=68 Identities=24% Similarity=0.260 Sum_probs=58.1
Q ss_pred HHHHHHHHHh-hcCCCCC-cccHHHHHHHHHhc-----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 15 EDHMKVLLKR-YDKDGDG-RLSKKELQAAFRNS-----GLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 15 ~~~~~~~f~~-~d~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
...+..+|.. +|.+++| .|+.+||+.++... ....+..++..+++.+|.+++|.|+|+||+.++..+.
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 4567889999 5788876 99999999999873 3345678899999999999999999999999998875
No 16
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.29 E-value=6.1e-11 Score=56.22 Aligned_cols=61 Identities=33% Similarity=0.532 Sum_probs=56.5
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 036018 18 MKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELV 78 (89)
Q Consensus 18 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 78 (89)
+..+|..+|.+++|.|+..++..++..++...+...+..++..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999998888899999999999999999999999998764
No 17
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.24 E-value=1.1e-10 Score=67.50 Aligned_cols=65 Identities=28% Similarity=0.441 Sum_probs=55.5
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhc-CCCCC--H----HHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 036018 16 DHMKVLLKRYDKDGDGRLSKKELQAAFRNS-GLHFS--G----FRARRALHHADSNHDGFIGNDEMKELVIY 80 (89)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~--~----~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 80 (89)
++++.+|+.||.+++|.|+.+|+..++..+ +...+ . +.++.++..+|.+++|.|+++||+.++.+
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 589999999999999999999999999884 33333 2 34677899999999999999999998864
No 18
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.24 E-value=1.3e-10 Score=65.39 Aligned_cols=65 Identities=18% Similarity=0.332 Sum_probs=60.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 036018 16 DHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYA 81 (89)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 81 (89)
++++.+|..+|++++|.|+..++..+++.++.+++...+..++..++. +++.|+|.+|+.++...
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~ 84 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVK 84 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999998 88999999999998654
No 19
>PTZ00183 centrin; Provisional
Probab=99.24 E-value=1.7e-10 Score=64.57 Aligned_cols=68 Identities=21% Similarity=0.339 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 036018 13 LSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIY 80 (89)
Q Consensus 13 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 80 (89)
..++.+..+|..+|.+++|.|+..++..++...+..++..++..++..++.+++|.|++++|..++..
T Consensus 87 ~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 87 DPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 34567888999999999999999999999888777888999999999999999999999999888754
No 20
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.22 E-value=2e-10 Score=61.87 Aligned_cols=62 Identities=24% Similarity=0.298 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 036018 13 LSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELV 78 (89)
Q Consensus 13 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 78 (89)
.....+.-.|..+|.|+||.|+.+|+..+. .......+...+..+|.+++|.||++||+..+
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 344568889999999999999999999866 22457778999999999999999999999988
No 21
>PTZ00184 calmodulin; Provisional
Probab=99.21 E-value=2.2e-10 Score=63.34 Aligned_cols=66 Identities=29% Similarity=0.508 Sum_probs=54.6
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 036018 14 SEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVI 79 (89)
Q Consensus 14 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 79 (89)
....+..+|..+|.+++|.|+..++..++...+..++...+..++..+|.+++|.|+++||+.++.
T Consensus 82 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 82 SEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 345677888888888889999999888888777777888888888888888888899998887764
No 22
>PTZ00183 centrin; Provisional
Probab=99.21 E-value=2.6e-10 Score=63.77 Aligned_cols=69 Identities=20% Similarity=0.376 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 036018 13 LSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYA 81 (89)
Q Consensus 13 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 81 (89)
....++..+|..+|.+++|.|+..++..++..++..++...+..++..+|.+++|.|++++|..++...
T Consensus 14 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 82 (158)
T PTZ00183 14 DQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKK 82 (158)
T ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHH
Confidence 344567889999999999999999999999988777888889999999999999999999999887643
No 23
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.21 E-value=2.3e-10 Score=66.73 Aligned_cols=66 Identities=20% Similarity=0.303 Sum_probs=61.6
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 17 HMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 17 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
.|+.+|..||.|++|.|+..||+.++..++..++.+..+.+++.+|..++|+|.|++|++++..+.
T Consensus 125 ~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~ 190 (221)
T KOG0037|consen 125 QWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQ 190 (221)
T ss_pred HHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHH
Confidence 478899999999999999999999999999999999999999999988899999999999987654
No 24
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.18 E-value=2.9e-10 Score=62.26 Aligned_cols=73 Identities=15% Similarity=0.218 Sum_probs=65.4
Q ss_pred CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCC--CCCcccHHHHHHHHHHHHHh
Q 036018 12 ALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSN--HDGFIGNDEMKELVIYAARW 84 (89)
Q Consensus 12 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~--~~g~i~~~ef~~~~~~~~~~ 84 (89)
+....+++.+|..||..+||+|+..++.++++.++.+++..++.+....+..+ +-.+|+|++|..++..+.+.
T Consensus 7 ~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn 81 (152)
T KOG0030|consen 7 PDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN 81 (152)
T ss_pred cchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc
Confidence 34458899999999999999999999999999999999999999999998877 45789999999999998654
No 25
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=4.1e-10 Score=62.95 Aligned_cols=68 Identities=18% Similarity=0.374 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 036018 13 LSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIY 80 (89)
Q Consensus 13 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 80 (89)
.+.+++..+|+.+|.|++|+|+..+|+.+...++.+++.+++..++..+|.+++|.|+-++|..++.+
T Consensus 103 dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 103 DTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred CcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 37788999999999999999999999999999999999999999999999999999999999988764
No 26
>PTZ00184 calmodulin; Provisional
Probab=99.16 E-value=4.4e-10 Score=62.16 Aligned_cols=68 Identities=25% Similarity=0.387 Sum_probs=58.9
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 036018 14 SEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYA 81 (89)
Q Consensus 14 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 81 (89)
....+...|..+|.+++|.|+.+++..++..++..++...+..++..++.+++|.|++++|+.++...
T Consensus 9 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 9 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 34567889999999999999999999999887777788889999999999999999999999887643
No 27
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.14 E-value=5.6e-10 Score=62.42 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=63.0
Q ss_pred CcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 036018 10 SIALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIY 80 (89)
Q Consensus 10 ~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 80 (89)
..+...+++..+|..||.+++|+|+..+|+.+++.+++.+...++..++..+|++++|.|++++|...+..
T Consensus 27 l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~ 97 (172)
T KOG0028|consen 27 LTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTV 97 (172)
T ss_pred ccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHH
Confidence 33344467899999999999999999999999999999999999999999999999999999999988653
No 28
>PF14658 EF-hand_9: EF-hand domain
Probab=99.14 E-value=5.2e-10 Score=54.21 Aligned_cols=61 Identities=13% Similarity=0.178 Sum_probs=56.2
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhcCC-CCCHHHHHHHHHhhCCCCC-CcccHHHHHHHHHH
Q 036018 20 VLLKRYDKDGDGRLSKKELQAAFRNSGL-HFSGFRARRALHHADSNHD-GFIGNDEMKELVIY 80 (89)
Q Consensus 20 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~~~~ 80 (89)
.+|..||.++.|.+...++..+++..+. .+.+++++.+.+++|+++. |.|++++|+.+++.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3689999999999999999999999877 8899999999999999998 99999999988863
No 29
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.13 E-value=5.1e-10 Score=57.62 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhcCC--CCCcccHHHHHHHHH-hcCCCCC----HHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH
Q 036018 15 EDHMKVLLKRYDKD--GDGRLSKKELQAAFR-NSGLHFS----GFRARRALHHADSNHDGFIGNDEMKELVIYAAR 83 (89)
Q Consensus 15 ~~~~~~~f~~~d~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 83 (89)
...+...|..|+.. ++|.|+..|++.++. .++..++ ...++.++..+|.+++|.|+|++|+.++..+..
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~ 82 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGV 82 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 34567899999754 478999999999996 4444454 889999999999999999999999999987653
No 30
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.12 E-value=1.1e-09 Score=63.93 Aligned_cols=72 Identities=31% Similarity=0.415 Sum_probs=65.7
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHh-cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhC
Q 036018 14 SEDHMKVLLKRYDKDGDGRLSKKELQAAFRN-SGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARWG 85 (89)
Q Consensus 14 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 85 (89)
....+...|...|++..|.|+.+|+..++.. -..+.+.+.++.++..+|.+.+|+|+++||..+|+.|++|+
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr 127 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWR 127 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999985 35678999999999999999999999999999999999994
No 31
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.08 E-value=1.5e-09 Score=60.39 Aligned_cols=73 Identities=14% Similarity=0.234 Sum_probs=66.7
Q ss_pred CCCcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 036018 8 NGSIALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIY 80 (89)
Q Consensus 8 ~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 80 (89)
.+.....++.+..+|..||.+++|.|+...++.+|...+.+.+.++++.+|..+-.+..|.++|..|+.++.+
T Consensus 93 kL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 93 KLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 4455666788999999999999999999999999999999999999999999999999999999999988864
No 32
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.04 E-value=1.2e-09 Score=63.31 Aligned_cols=67 Identities=21% Similarity=0.307 Sum_probs=56.1
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH
Q 036018 17 HMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAAR 83 (89)
Q Consensus 17 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 83 (89)
-...+|..||.+++|.|++.|+..++..+..+..++.++.+|..+|.+++|.|+++|+..++..+..
T Consensus 65 y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~ 131 (193)
T KOG0044|consen 65 YAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQ 131 (193)
T ss_pred HHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHH
Confidence 3567888899999999999998888888777777778888899999999999999999888877653
No 33
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=99.00 E-value=3.7e-09 Score=61.27 Aligned_cols=73 Identities=22% Similarity=0.334 Sum_probs=63.9
Q ss_pred cCCCHHH---HHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH
Q 036018 11 IALSEDH---MKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAAR 83 (89)
Q Consensus 11 ~~~~~~~---~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 83 (89)
++++..+ +...|..||.+.||+|+..|++.++.+++.+.+.--+..+++.+|-|.+|+|+|.+|.-+++....
T Consensus 91 ~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa 166 (244)
T KOG0041|consen 91 SEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA 166 (244)
T ss_pred hHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc
Confidence 3444444 467899999999999999999999999999888888999999999999999999999999887653
No 34
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.99 E-value=1e-08 Score=52.83 Aligned_cols=67 Identities=13% Similarity=0.231 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHh-----cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 15 EDHMKVLLKRYDKDGDGRLSKKELQAAFRN-----SGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 15 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
...+..+|..|. .+.+.++..|++..+.. +....+...++.+|...|.++||.|+|.||..++..+.
T Consensus 7 i~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 7 MEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 345678999997 44568999999998866 23345678899999999999999999999999998775
No 35
>PLN02964 phosphatidylserine decarboxylase
Probab=98.90 E-value=2.1e-08 Score=67.06 Aligned_cols=63 Identities=27% Similarity=0.360 Sum_probs=58.0
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 036018 18 MKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIY 80 (89)
Q Consensus 18 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 80 (89)
+..+|..+|.+++|.|+..||..++..++...+++++..+|..+|.+++|.|+++||..++..
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 789999999999999999999999988777788899999999999999999999999998866
No 36
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.90 E-value=1.3e-08 Score=46.80 Aligned_cols=51 Identities=18% Similarity=0.315 Sum_probs=42.8
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 32 RLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 32 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
+++..|++.+++.++..++...+..+|..+|.+++|++..+||..+++.++
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~LT 51 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRLT 51 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHhC
Confidence 468899999999999999999999999999999999999999999998764
No 37
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.81 E-value=4.7e-08 Score=53.71 Aligned_cols=68 Identities=16% Similarity=0.268 Sum_probs=59.6
Q ss_pred CcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 036018 10 SIALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELV 78 (89)
Q Consensus 10 ~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 78 (89)
..+.+-+.+-+.++.||++++|.|...+++.+|..++..++++++..+++.. -|.+|.|.|++|+..+
T Consensus 82 k~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 82 KDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHI 149 (152)
T ss_pred cccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHH
Confidence 4445556778899999999999999999999999999999999999999887 4668999999998754
No 38
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.77 E-value=2e-08 Score=41.37 Aligned_cols=26 Identities=31% Similarity=0.746 Sum_probs=13.2
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHH
Q 036018 18 MKVLLKRYDKDGDGRLSKKELQAAFR 43 (89)
Q Consensus 18 ~~~~f~~~d~~~~g~i~~~e~~~~l~ 43 (89)
+..+|..+|+|++|+|+.+||..++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 34455555555555555555555443
No 39
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.76 E-value=1.7e-08 Score=41.59 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=26.0
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 036018 53 RARRALHHADSNHDGFIGNDEMKELVIYA 81 (89)
Q Consensus 53 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 81 (89)
+++.+|+.+|.|++|.|+++||..++..+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 46789999999999999999999998753
No 40
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.74 E-value=2.5e-07 Score=48.99 Aligned_cols=68 Identities=15% Similarity=0.198 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 12 ALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 12 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
+........+|...+. ++|.|+-.+...++.. .+++.+.+.++|...|.+++|.++++||+-.+..+.
T Consensus 6 ~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~--S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLDP-QDGKISGDQAREFFMK--SGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp CCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHH--TTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHH--cCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHH
Confidence 3445678889998875 5899999999998887 458899999999999999999999999999887764
No 41
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.72 E-value=2.5e-07 Score=51.73 Aligned_cols=66 Identities=23% Similarity=0.293 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHH---------------------------------HHHHHHhh
Q 036018 15 EDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFR---------------------------------ARRALHHA 61 (89)
Q Consensus 15 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~---------------------------------~~~~~~~~ 61 (89)
.++++.+|...|.|.||.|+.++++..+..++...++++ +..+|+.+
T Consensus 31 IqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~F 110 (171)
T KOG0031|consen 31 IQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTF 110 (171)
T ss_pred HHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhc
Confidence 356789999999999999999999999998876654443 55667777
Q ss_pred CCCCCCcccHHHHHHHHHH
Q 036018 62 DSNHDGFIGNDEMKELVIY 80 (89)
Q Consensus 62 d~~~~g~i~~~ef~~~~~~ 80 (89)
|.++.|.|.-+.++.++..
T Consensus 111 D~~~~G~I~~d~lre~Ltt 129 (171)
T KOG0031|consen 111 DDEGSGKIDEDYLRELLTT 129 (171)
T ss_pred CccCCCccCHHHHHHHHHH
Confidence 8888888887777777653
No 42
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.69 E-value=1.2e-07 Score=60.20 Aligned_cols=65 Identities=18% Similarity=0.379 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 036018 15 EDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVI 79 (89)
Q Consensus 15 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 79 (89)
+.++.++|...|.+.||.|+.+|+...+..++.+++.+++...+..+|+++++.|+++||.+.+.
T Consensus 81 E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 44678899999999999999999999999999999999999999999999999999999998763
No 43
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.65 E-value=6.6e-07 Score=52.09 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=61.1
Q ss_pred CcCCCHHHHHHHHHhhcC-CCCCcccHHHHHHHHHhcC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 036018 10 SIALSEDHMKVLLKRYDK-DGDGRLSKKELQAAFRNSG-LHFSGFRARRALHHADSNHDGFIGNDEMKELVIYA 81 (89)
Q Consensus 10 ~~~~~~~~~~~~f~~~d~-~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 81 (89)
.+..++.+++.+++.|-. .+.|.++.++++.++.... .+-+..-++.+|+.+|.+++|.|++.||+..+..+
T Consensus 20 ~t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~ 93 (193)
T KOG0044|consen 20 QTKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLT 93 (193)
T ss_pred hcCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH
Confidence 567788889999999854 5589999999999998855 35566778999999999999999999999988764
No 44
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.62 E-value=2.8e-07 Score=58.78 Aligned_cols=57 Identities=28% Similarity=0.398 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 13 LSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 13 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
..+..+..+|..+|.+++|.|+.+|+.. ++.+|..+|.+++|.|+++||...+....
T Consensus 331 ~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 331 AFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred hhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 3456678999999999999999999842 47789999999999999999999987654
No 45
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.60 E-value=5e-07 Score=57.46 Aligned_cols=68 Identities=19% Similarity=0.263 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 036018 13 LSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLH-FSGFRARRALHHADSNHDGFIGNDEMKELVIY 80 (89)
Q Consensus 13 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 80 (89)
.-+.+++.+|..+|.+++|.++..++.+.+..+..+ ...+.+..++..+|.+.+|+++|+||..++..
T Consensus 11 er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~ 79 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN 79 (463)
T ss_pred HHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH
Confidence 334568999999999999999999999999887655 77788899999999999999999999999853
No 46
>PLN02964 phosphatidylserine decarboxylase
Probab=98.59 E-value=4.4e-07 Score=60.90 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=53.7
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhcC-CCCCHHH---HHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 036018 16 DHMKVLLKRYDKDGDGRLSKKELQAAFRNSG-LHFSGFR---ARRALHHADSNHDGFIGNDEMKELVIYA 81 (89)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 81 (89)
+++.++|..+|++++|.+ ++.++..++ ..+++.+ ++.+|+.+|.+++|.|+++||+.++..+
T Consensus 143 ~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l 208 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF 208 (644)
T ss_pred HHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh
Confidence 567889999999999996 777888877 4677776 7999999999999999999999998764
No 47
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.57 E-value=1.8e-07 Score=39.00 Aligned_cols=27 Identities=41% Similarity=0.710 Sum_probs=20.8
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHH
Q 036018 17 HMKVLLKRYDKDGDGRLSKKELQAAFR 43 (89)
Q Consensus 17 ~~~~~f~~~d~~~~g~i~~~e~~~~l~ 43 (89)
+++.+|..+|.+++|.|+.+|+..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 366788888888888888888888777
No 48
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.50 E-value=4.5e-07 Score=50.44 Aligned_cols=64 Identities=23% Similarity=0.368 Sum_probs=50.6
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhcC-CCCCHHHH----HHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 19 KVLLKRYDKDGDGRLSKKELQAAFRNSG-LHFSGFRA----RRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 19 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~----~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
.-+|+.||-|+|++|...++...+..+. ..++.+++ +.++.+.|.+++|++++.||..++.+.-
T Consensus 111 ~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~raP 179 (189)
T KOG0038|consen 111 KYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRAP 179 (189)
T ss_pred hheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhCc
Confidence 4467788888888888888888887753 45777665 4567778999999999999999987643
No 49
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.39 E-value=4.1e-06 Score=48.67 Aligned_cols=64 Identities=25% Similarity=0.405 Sum_probs=46.8
Q ss_pred HHHHHhhcCCCCCc-ccHHHHHHHHHhcCCCCCH-HHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 19 KVLLKRYDKDGDGR-LSKKELQAAFRNSGLHFSG-FRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 19 ~~~f~~~d~~~~g~-i~~~e~~~~l~~~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
.+++..|+.+++|. |++++|...+.......+. ..++.+|+.+|.+++|.|+.+|+..++..+-
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~ 134 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMV 134 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHH
Confidence 45666666666665 7777777777665443333 4788899999999999999999998887654
No 50
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.37 E-value=3.9e-06 Score=54.16 Aligned_cols=65 Identities=22% Similarity=0.250 Sum_probs=57.0
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhc----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 18 MKVLLKRYDKDGDGRLSKKELQAAFRNS----GLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 18 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
+..+|...|.|.+|.|+.+||..+...+ ...++.+.+.++-..+|.++||.|++.||...++.+.
T Consensus 549 LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvd 617 (631)
T KOG0377|consen 549 LETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVD 617 (631)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhc
Confidence 5679999999999999999999877664 4567889999999999999999999999999887653
No 51
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.31 E-value=1.5e-06 Score=34.41 Aligned_cols=22 Identities=41% Similarity=0.756 Sum_probs=12.6
Q ss_pred HHHHHhhcCCCCCcccHHHHHH
Q 036018 19 KVLLKRYDKDGDGRLSKKELQA 40 (89)
Q Consensus 19 ~~~f~~~d~~~~g~i~~~e~~~ 40 (89)
+.+|..+|.|++|.|+.+|+..
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHH
Confidence 3455555666666666665554
No 52
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.22 E-value=8.2e-07 Score=47.71 Aligned_cols=60 Identities=27% Similarity=0.284 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 036018 15 EDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKE 76 (89)
Q Consensus 15 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 76 (89)
...+.-.|..+|.|+||.|+..|+..+...+ ...+..+...+..+|.++++.|++.||..
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3445667999999999999999998776644 35566788899999999999999999975
No 53
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.18 E-value=3.8e-06 Score=33.25 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=21.8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHH
Q 036018 54 ARRALHHADSNHDGFIGNDEMKELV 78 (89)
Q Consensus 54 ~~~~~~~~d~~~~g~i~~~ef~~~~ 78 (89)
++.+|..+|.+++|.|+.+||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3568999999999999999998764
No 54
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=5e-06 Score=51.45 Aligned_cols=72 Identities=26% Similarity=0.308 Sum_probs=60.5
Q ss_pred CCCcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 036018 8 NGSIALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVI 79 (89)
Q Consensus 8 ~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 79 (89)
+..+..+++.+..++...|.+++|+|+..+++.++..........++..-+..+|.+.+|.|+|+++.....
T Consensus 69 ~l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~ 140 (325)
T KOG4223|consen 69 QLTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTY 140 (325)
T ss_pred hhCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhh
Confidence 445566778899999999999999999999999888755555667778889999999999999999876654
No 55
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.11 E-value=4.1e-05 Score=50.36 Aligned_cols=73 Identities=21% Similarity=0.315 Sum_probs=60.3
Q ss_pred CCcCCCHHH---HHHHHHhhcCCCCCcccHHHHHHHHHhcCC---CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 9 GSIALSEDH---MKVLLKRYDKDGDGRLSKKELQAAFRNSGL---HFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 9 ~~~~~~~~~---~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
..+++++++ +...|...| +++|+++..++..++..... ...+++++.++...+.+.+|+|+|++|..++..++
T Consensus 9 ~~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 9 LQSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred hcccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 345566665 567888888 99999999999999988543 34588999999999999999999999999876655
No 56
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.09 E-value=6.9e-06 Score=34.04 Aligned_cols=28 Identities=32% Similarity=0.558 Sum_probs=24.1
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 036018 53 RARRALHHADSNHDGFIGNDEMKELVIY 80 (89)
Q Consensus 53 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 80 (89)
+++.+|..+|.+++|.|+.+||..++..
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 3578999999999999999999999873
No 57
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.07 E-value=3e-06 Score=51.00 Aligned_cols=68 Identities=21% Similarity=0.275 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh-cCC--CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 036018 13 LSEDHMKVLLKRYDKDGDGRLSKKELQAAFRN-SGL--HFSGFRARRALHHADSNHDGFIGNDEMKELVIY 80 (89)
Q Consensus 13 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~-~~~--~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 80 (89)
.+...++.+|...|.+.||+|+..|+++.+.. ... .-+.++-..-|..+|.+++|.|+|+||..-+..
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 44567899999999999999999999998765 211 112233344678899999999999999665543
No 58
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.96 E-value=3.9e-05 Score=55.74 Aligned_cols=70 Identities=21% Similarity=0.504 Sum_probs=58.3
Q ss_pred cCCCHHH---HHHHHHhhcCCCCCcccHHHHHHHHHhcCCCC-------CHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 036018 11 IALSEDH---MKVLLKRYDKDGDGRLSKKELQAAFRNSGLHF-------SGFRARRALHHADSNHDGFIGNDEMKELVIY 80 (89)
Q Consensus 11 ~~~~~~~---~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~-------~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 80 (89)
+..+++. +.-+|..||.+.+|.++..+|+.+++.+|..+ ++.++...+..+|++.+|.|+..||..++..
T Consensus 2245 ~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2245 NGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred CCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 3444444 45699999999999999999999999987654 2347899999999999999999999998854
No 59
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=1.9e-05 Score=48.95 Aligned_cols=61 Identities=30% Similarity=0.370 Sum_probs=52.0
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 036018 19 KVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVI 79 (89)
Q Consensus 19 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 79 (89)
.+.+...|+|+||+++..|+..++.-........+++.++...|.+++|++|++|-+.-+.
T Consensus 244 e~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~~d 304 (325)
T KOG4223|consen 244 EQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILEHYD 304 (325)
T ss_pred HHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhhCcc
Confidence 3556667999999999999998887666667788999999999999999999999876553
No 60
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.87 E-value=0.00016 Score=47.06 Aligned_cols=68 Identities=19% Similarity=0.309 Sum_probs=53.4
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhc-CCCCC---------------------------------------------
Q 036018 17 HMKVLLKRYDKDGDGRLSKKELQAAFRNS-GLHFS--------------------------------------------- 50 (89)
Q Consensus 17 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~--------------------------------------------- 50 (89)
++.+.|..+|.+..|+|+......++..+ +.+++
T Consensus 465 dL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr 544 (631)
T KOG0377|consen 465 DLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYR 544 (631)
T ss_pred HHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHh
Confidence 46789999999999999999998888763 22210
Q ss_pred -HHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHh
Q 036018 51 -GFRARRALHHADSNHDGFIGNDEMKELVIYAARW 84 (89)
Q Consensus 51 -~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 84 (89)
.+.+..+|+..|.|.+|.|+.+||+..|..+-.+
T Consensus 545 ~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh 579 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSH 579 (631)
T ss_pred chhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhh
Confidence 1225667899999999999999999999876543
No 61
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.77 E-value=0.0001 Score=34.18 Aligned_cols=32 Identities=34% Similarity=0.651 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 036018 13 LSEDHMKVLLKRYDKDGDGRLSKKELQAAFRN 44 (89)
Q Consensus 13 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 44 (89)
.+.+++..+|..+|.+++|.|+..||..++..
T Consensus 22 ~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 22 LSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 77888999999999999999999999988753
No 62
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.69 E-value=0.00013 Score=40.91 Aligned_cols=65 Identities=23% Similarity=0.385 Sum_probs=53.6
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhcCC-CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH
Q 036018 19 KVLLKRYDKDGDGRLSKKELQAAFRNSGL-HFSGFRARRALHHADSNHDGFIGNDEMKELVIYAAR 83 (89)
Q Consensus 19 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 83 (89)
+++...|..||.|.++..++.+++..++. .+-+-.+..+|+.+|.++++.|.-++....+.+++.
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr 139 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTR 139 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhh
Confidence 45666777899999999999999988653 344456778899999999999999999999988764
No 63
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.55 E-value=0.00013 Score=28.55 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=11.3
Q ss_pred HHHHhhCCCCCCcccHHHHHHHH
Q 036018 56 RALHHADSNHDGFIGNDEMKELV 78 (89)
Q Consensus 56 ~~~~~~d~~~~g~i~~~ef~~~~ 78 (89)
.+|..+|.+++|.|++.+|..++
T Consensus 4 ~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 4 EAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHCCCCCCcEeHHHHHHHH
Confidence 34444455555555555554444
No 64
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.52 E-value=0.0002 Score=27.92 Aligned_cols=27 Identities=30% Similarity=0.678 Sum_probs=23.9
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHh
Q 036018 18 MKVLLKRYDKDGDGRLSKKELQAAFRN 44 (89)
Q Consensus 18 ~~~~f~~~d~~~~g~i~~~e~~~~l~~ 44 (89)
+..+|..+|.+++|.|+..++..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999988764
No 65
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.49 E-value=0.00065 Score=34.31 Aligned_cols=63 Identities=10% Similarity=0.342 Sum_probs=50.4
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhc-C-CCCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHHH
Q 036018 17 HMKVLLKRYDKDGDGRLSKKELQAAFRNS-G-LHFSGFRARRALHHADSN----HDGFIGNDEMKELVIY 80 (89)
Q Consensus 17 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~-~~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~~~~ 80 (89)
++..+|..+.. +.+.++.++|...+..- + ...+...+..++..+..+ ..+.+++++|..++..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 46789999955 78899999999999763 2 246788999999888654 3688999999999853
No 66
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.00034 Score=46.15 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=57.2
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH--HHhCcc
Q 036018 18 MKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYA--ARWGFT 87 (89)
Q Consensus 18 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~--~~~~~~ 87 (89)
+...|+....|..|+|+-.--+..+.+ ..+.-.++..+|...|.++||.+++.||+..+..+ ++.||-
T Consensus 233 YvnQFrtvQpDp~gfisGsaAknFFtK--Sklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRkNgyp 302 (737)
T KOG1955|consen 233 YVNQFRTVQPDPHGFISGSAAKNFFTK--SKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARKNGYP 302 (737)
T ss_pred HHhhhhcccCCcccccccHHHHhhhhh--ccCchHHHHHHHhhcccCccccccHHHHHhhHhheeecccCCC
Confidence 567888888999999998877777776 45788899999999999999999999999998765 355653
No 67
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.47 E-value=0.00035 Score=45.22 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=44.8
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhcC------C--------CCC-HHHHHHHH--HhhCCCCCCcccHHHHHHHHHH
Q 036018 18 MKVLLKRYDKDGDGRLSKKELQAAFRNSG------L--------HFS-GFRARRAL--HHADSNHDGFIGNDEMKELVIY 80 (89)
Q Consensus 18 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~------~--------~~~-~~~~~~~~--~~~d~~~~g~i~~~ef~~~~~~ 80 (89)
.+-+|..||.|+||.|+.+||..+...+. . ..+ ...+...+ --+..++++.+++++|..++..
T Consensus 235 F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~ 314 (489)
T KOG2643|consen 235 FRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQEN 314 (489)
T ss_pred ceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHH
Confidence 45589999999999999999987764421 0 001 11222222 2357788899999999999877
Q ss_pred HH
Q 036018 81 AA 82 (89)
Q Consensus 81 ~~ 82 (89)
++
T Consensus 315 Lq 316 (489)
T KOG2643|consen 315 LQ 316 (489)
T ss_pred HH
Confidence 65
No 68
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.0037 Score=33.78 Aligned_cols=67 Identities=22% Similarity=0.245 Sum_probs=47.0
Q ss_pred cCCCHHHHH-HHHHhhcCCCCCcccHHHHHHHHHhc------CC---C-CCHHHH----HHHHHhhCCCCCCcccHHHHH
Q 036018 11 IALSEDHMK-VLLKRYDKDGDGRLSKKELQAAFRNS------GL---H-FSGFRA----RRALHHADSNHDGFIGNDEMK 75 (89)
Q Consensus 11 ~~~~~~~~~-~~f~~~d~~~~g~i~~~e~~~~l~~~------~~---~-~~~~~~----~~~~~~~d~~~~g~i~~~ef~ 75 (89)
..+++++++ ..|...|.|++++++-=|+..++.-. +. + .++.++ +.++..-|.+++|.|+|.||.
T Consensus 61 a~mtpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEfl 140 (144)
T KOG4065|consen 61 AKMTPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFL 140 (144)
T ss_pred hhCCHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHH
Confidence 344555553 48888999999999988888877543 11 1 244444 445556688999999999997
Q ss_pred HH
Q 036018 76 EL 77 (89)
Q Consensus 76 ~~ 77 (89)
..
T Consensus 141 K~ 142 (144)
T KOG4065|consen 141 KR 142 (144)
T ss_pred hh
Confidence 53
No 69
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.18 E-value=0.0011 Score=41.74 Aligned_cols=70 Identities=13% Similarity=0.139 Sum_probs=54.5
Q ss_pred CcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 036018 10 SIALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIY 80 (89)
Q Consensus 10 ~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 80 (89)
.+.-+.+.++-+|.+|+.+-||.+...++..+++. ..+...-.+..+|...+...+++|++++|..+...
T Consensus 290 ~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~-~lgv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 290 GPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQV-VLGVEVLRVPVLFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred CCCCcHHHHHHHHHhcccccccccchHHHHHHHHH-hcCcceeeccccchhhhcccCcceeHHHHHHHHHh
Confidence 45566777888999999999999988888877776 33345555677888888888899999999888743
No 70
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.14 E-value=0.00086 Score=32.18 Aligned_cols=29 Identities=21% Similarity=0.463 Sum_probs=26.0
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 54 ARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 54 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
++.+|..+|.+++|.|+.+||..++..+.
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~ 30 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLG 30 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhc
Confidence 57799999999999999999999998753
No 71
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.09 E-value=0.00041 Score=44.92 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=46.6
Q ss_pred cCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 26 DKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 26 d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
+.+.+|.|+..|....+..++ .++...+-.|+.+|.|+||.|+.+||..+...+.
T Consensus 209 ~lg~~GLIsfSdYiFLlTlLS--~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~ 263 (489)
T KOG2643|consen 209 KLGESGLISFSDYIFLLTLLS--IPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIR 263 (489)
T ss_pred EcCCCCeeeHHHHHHHHHHHc--cCcccceeeeeeeecCCCCcccHHHHHHHHHHHH
Confidence 456689999999998888765 5667788899999999999999999998886654
No 72
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.0042 Score=43.23 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=55.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 17 HMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 17 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
+...+|...|+...|+++-..-+.+|.. .+++...+..++..-|.|+||+++.+||+-.+..+-
T Consensus 196 KY~QlFNa~DktrsG~Lsg~qaR~aL~q--S~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~lie 259 (1118)
T KOG1029|consen 196 KYRQLFNALDKTRSGYLSGQQARSALGQ--SGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIE 259 (1118)
T ss_pred HHHHHhhhcccccccccccHHHHHHHHh--cCCchhhHhhheeeeccCCCCcccHHHHHHHHHHHH
Confidence 4678999999999999999888888876 347888889999999999999999999988776654
No 73
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.79 E-value=0.025 Score=32.02 Aligned_cols=64 Identities=9% Similarity=0.155 Sum_probs=46.9
Q ss_pred HHHHHhh---cCCCCCcccHHHHHHHHHhc---CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 19 KVLLKRY---DKDGDGRLSKKELQAAFRNS---GLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 19 ~~~f~~~---d~~~~g~i~~~e~~~~l~~~---~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
+.+|..| .......++...|..+++.. ...++...++.+|..+-..+..+|+|++|...+..+-
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 3455554 44445578999999999873 4458889999999998766777899999999998775
No 74
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=96.79 E-value=0.0034 Score=32.31 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=29.4
Q ss_pred cCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 036018 11 IALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNS 45 (89)
Q Consensus 11 ~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 45 (89)
....+..+..++..+|.|++|.|+.+||..++..+
T Consensus 47 ~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 47 NQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred CCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 34456788899999999999999999999887764
No 75
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=96.67 E-value=0.0051 Score=45.66 Aligned_cols=59 Identities=22% Similarity=0.396 Sum_probs=51.2
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 036018 20 VLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVI 79 (89)
Q Consensus 20 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 79 (89)
..|..||+|+.|.|+..+|..++.. ....++++++.++.-...+.+..++|++|+.-+.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~-~k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEG-HKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhc-cccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 3678899999999999999999886 5567889999999999999999999999987654
No 76
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.66 E-value=0.0045 Score=39.32 Aligned_cols=64 Identities=19% Similarity=0.208 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 036018 12 ALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVI 79 (89)
Q Consensus 12 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 79 (89)
+.....+.=.|..+|.|.|+.|+..|+..+-.. -.+.-++..|..+|...+|.|+-.||+..+.
T Consensus 246 p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 246 PICKDSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred cchhhhhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhhc
Confidence 455677888999999999999999998875543 4567789999999999999999999987764
No 77
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=96.53 E-value=0.01 Score=41.02 Aligned_cols=67 Identities=19% Similarity=0.363 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 036018 15 EDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYA 81 (89)
Q Consensus 15 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 81 (89)
+.-+..+|...|++.+|.++..+...++..+...+....+..+|++.+..+++++.+++|..+...+
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~ 201 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKEL 201 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhh
Confidence 3446889999999999999999999999998888888999999999988899999999998887553
No 78
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=96.50 E-value=0.0098 Score=30.77 Aligned_cols=33 Identities=9% Similarity=0.111 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 036018 13 LSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNS 45 (89)
Q Consensus 13 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 45 (89)
.....+..++..+|.+++|.|+.+||..++..+
T Consensus 50 ~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 50 KDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred cCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 356788999999999999999999999888764
No 79
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.48 E-value=0.01 Score=30.46 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=29.8
Q ss_pred cCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 036018 11 IALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNS 45 (89)
Q Consensus 11 ~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 45 (89)
...+++++..++...|.+++|.|+.+||..++..+
T Consensus 46 ~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 46 SKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred CCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 44577889999999999999999999998877654
No 80
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.40 E-value=0.0085 Score=30.88 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=27.2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 036018 16 DHMKVLLKRYDKDGDGRLSKKELQAAFRNS 45 (89)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 45 (89)
+.+..++...|.|+||.|+++||..++..+
T Consensus 47 ~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 47 EGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 678999999999999999999999888764
No 81
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.29 E-value=0.01 Score=40.03 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=50.5
Q ss_pred CCCCCCcCCCHHH---HHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 036018 5 VPRNGSIALSEDH---MKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYA 81 (89)
Q Consensus 5 ~~~~~~~~~~~~~---~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 81 (89)
+|..++.+++... +..+|..||.|+||.++..|+..++......+...... . ..-.....|.++++.|...|...
T Consensus 301 ~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~-~-~~t~~~~~G~ltl~g~l~~WsL~ 378 (625)
T KOG1707|consen 301 VPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPY-K-DSTVKNERGWLTLNGFLSQWSLM 378 (625)
T ss_pred CCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcc-c-ccceecccceeehhhHHHHHHHH
Confidence 3445566666554 57799999999999999999999998854322100000 0 00112357899999999998764
Q ss_pred H
Q 036018 82 A 82 (89)
Q Consensus 82 ~ 82 (89)
+
T Consensus 379 T 379 (625)
T KOG1707|consen 379 T 379 (625)
T ss_pred h
Confidence 4
No 82
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.26 E-value=0.0091 Score=30.94 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=29.8
Q ss_pred cCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 036018 11 IALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNS 45 (89)
Q Consensus 11 ~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 45 (89)
....++.+.+++...|.|+||.|++.|+...+..+
T Consensus 43 ~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 43 NQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 34456778899999999999999999999888764
No 83
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.24 E-value=0.018 Score=26.61 Aligned_cols=33 Identities=21% Similarity=0.516 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 036018 12 ALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRN 44 (89)
Q Consensus 12 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 44 (89)
+.....+..+|..+|.+++|.+..+|+......
T Consensus 17 ~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 17 EMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp ---HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 445566788999999999999999999887764
No 84
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=96.20 E-value=0.012 Score=31.84 Aligned_cols=29 Identities=31% Similarity=0.406 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 036018 15 EDHMKVLLKRYDKDGDGRLSKKELQAAFR 43 (89)
Q Consensus 15 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~ 43 (89)
+..+..+|..+|.|++|.|+.+|+..++.
T Consensus 79 e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 79 EHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 34567789999999999999999999883
No 85
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=96.17 E-value=0.017 Score=29.64 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 036018 13 LSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNS 45 (89)
Q Consensus 13 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 45 (89)
.+++.+..++..+|.+++|.|+.++|..++..+
T Consensus 49 ~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 49 KDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred CCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 466789999999999999999999999877764
No 86
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.14 E-value=0.065 Score=30.96 Aligned_cols=63 Identities=14% Similarity=0.192 Sum_probs=47.7
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhcCCC-------------------------------------------------
Q 036018 18 MKVLLKRYDKDGDGRLSKKELQAAFRNSGLH------------------------------------------------- 48 (89)
Q Consensus 18 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~------------------------------------------------- 48 (89)
+++=..-||.|+||.|.+.|--.-++.++.+
T Consensus 9 LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD 88 (174)
T PF05042_consen 9 LQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYD 88 (174)
T ss_pred HhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccccc
Confidence 4444556799999999988877666665443
Q ss_pred ----CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 036018 49 ----FSGFRARRALHHADSNHDGFIGNDEMKELVIY 80 (89)
Q Consensus 49 ----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 80 (89)
...+..+.+|+.++..+.+.+++.|...++..
T Consensus 89 ~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 89 TEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred cCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 12455788999999888889999999888865
No 87
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=96.12 E-value=0.02 Score=29.32 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 036018 13 LSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNS 45 (89)
Q Consensus 13 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 45 (89)
..++.+..+|..+|.+++|.|+.++|..++..+
T Consensus 48 ~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 48 KNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred CCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 347789999999999999999999998877653
No 88
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=96.07 E-value=0.02 Score=27.15 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 036018 13 LSEDHMKVLLKRYDKDGDGRLSKKELQAAFRN 44 (89)
Q Consensus 13 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 44 (89)
.+.+.+..+|..+|.+++|.|+.+++..++..
T Consensus 30 ~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 30 LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 36677889999999999999999999887765
No 89
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=96.00 E-value=0.02 Score=26.11 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=24.1
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 036018 54 ARRALHHADSNHDGFIGNDEMKELVIYA 81 (89)
Q Consensus 54 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 81 (89)
+..+|..+|.+++|.|++.+|..++..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~ 29 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL 29 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 4567889999999999999999988764
No 90
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=95.98 E-value=0.061 Score=36.58 Aligned_cols=34 Identities=29% Similarity=0.315 Sum_probs=25.3
Q ss_pred CCCcCCCHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 036018 8 NGSIALSEDHMKVLLKRYDKDGDGRLSKKELQAA 41 (89)
Q Consensus 8 ~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~ 41 (89)
+...+.....+.++|...|.|.||.++-.|+-..
T Consensus 187 qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~f 220 (625)
T KOG1707|consen 187 QELKPRCVKALKRIFKISDSDNDGALSDAELNDF 220 (625)
T ss_pred ccccHHHHHHHHHHHhhhccccccccchhhhhHH
Confidence 3344444456789999999999999998887643
No 91
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.96 E-value=0.03 Score=37.94 Aligned_cols=65 Identities=18% Similarity=0.253 Sum_probs=58.0
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 18 MKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 18 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
.+.-|..+|.|..|+.+..++..++...+.+.+.+..+.+....+..-+|.+...||.+++..++
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 35578888999999999999999999877789999999999999999899999999999998765
No 92
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.96 E-value=0.018 Score=29.71 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 036018 12 ALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNS 45 (89)
Q Consensus 12 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 45 (89)
..+++++..++..+|.+++|.|+.++|..++...
T Consensus 47 ~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 47 QKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred cccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3466788999999999999999999999877653
No 93
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=95.95 E-value=0.028 Score=28.85 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 036018 12 ALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNS 45 (89)
Q Consensus 12 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 45 (89)
..+++++..++...|.|++|.|+.++|..++..+
T Consensus 47 ~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 47 IKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3466779999999999999999999998877653
No 94
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=95.94 E-value=0.027 Score=29.89 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=28.2
Q ss_pred cCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 036018 11 IALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRN 44 (89)
Q Consensus 11 ~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 44 (89)
..+..+.+..++...|.+++|+++.+||.-++..
T Consensus 38 S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 38 SGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp TTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 3466778999999999999999999999887664
No 95
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=95.90 E-value=0.031 Score=36.84 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=25.1
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 036018 30 DGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVI 79 (89)
Q Consensus 30 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 79 (89)
+|+++.+++...+-.....-+...++..|+.+|.+++|.|+..|..-++.
T Consensus 329 eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fye 378 (493)
T KOG2562|consen 329 EGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYE 378 (493)
T ss_pred cCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHH
Confidence 44455444444443333333344455555556666666666665555444
No 96
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=95.83 E-value=0.023 Score=29.39 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 036018 13 LSEDHMKVLLKRYDKDGDGRLSKKELQAAFRN 44 (89)
Q Consensus 13 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 44 (89)
.+++++..++..+|.+++|.|+.++|..++..
T Consensus 41 ~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 41 LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 56678889999999999999999999987765
No 97
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=95.64 E-value=0.036 Score=37.06 Aligned_cols=63 Identities=22% Similarity=0.494 Sum_probs=44.0
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhcCCC------CC-----------------------------HHHHHHHHHhhC
Q 036018 18 MKVLLKRYDKDGDGRLSKKELQAAFRNSGLH------FS-----------------------------GFRARRALHHAD 62 (89)
Q Consensus 18 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~------~~-----------------------------~~~~~~~~~~~d 62 (89)
...+|..||..++|.++.+++.+++...... .+ .+...+.|...|
T Consensus 110 ~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d 189 (694)
T KOG0751|consen 110 FEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKD 189 (694)
T ss_pred HHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4779999999999999999999999874211 11 233455566667
Q ss_pred CCCCCcccHHHHHHHHHH
Q 036018 63 SNHDGFIGNDEMKELVIY 80 (89)
Q Consensus 63 ~~~~g~i~~~ef~~~~~~ 80 (89)
..++|.|+--+|..++..
T Consensus 190 ~~~ng~is~Ldfq~imvt 207 (694)
T KOG0751|consen 190 KAKNGFISVLDFQDIMVT 207 (694)
T ss_pred ccCCCeeeeechHhhhhh
Confidence 777777766666666543
No 98
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=95.56 E-value=0.029 Score=35.41 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=42.8
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHh-c----CCCCCHH-----------HHHHHHHhhCCCCCCcccHHHHHHHH
Q 036018 20 VLLKRYDKDGDGRLSKKELQAAFRN-S----GLHFSGF-----------RARRALHHADSNHDGFIGNDEMKELV 78 (89)
Q Consensus 20 ~~f~~~d~~~~g~i~~~e~~~~l~~-~----~~~~~~~-----------~~~~~~~~~d~~~~g~i~~~ef~~~~ 78 (89)
..|..+|.|+||+++..++...+.. + .....++ .-..+++.+|.+.+.-|+++||...-
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 4566778999999999999887765 2 1111111 12557899999999999999998765
No 99
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=95.53 E-value=0.096 Score=35.17 Aligned_cols=63 Identities=17% Similarity=0.108 Sum_probs=45.8
Q ss_pred HHHHHH-hhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 18 MKVLLK-RYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 18 ~~~~f~-~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
+.++.. ..|.-.||.|+++||...-..+.. ++.....+|..+|+.++|.++++++.+++.+++
T Consensus 75 ~v~Lla~iaD~tKDglisf~eF~afe~~lC~--pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~ 138 (694)
T KOG0751|consen 75 IVRLLASIADQTKDGLISFQEFRAFESVLCA--PDALFEVAFQLFDRLGNGEVSFEDVADIFGQTN 138 (694)
T ss_pred HHHHHHhhhhhcccccccHHHHHHHHhhccC--chHHHHHHHHHhcccCCCceehHHHHHHHhccc
Confidence 334444 347778899999999865544442 345556678889999999999999999987654
No 100
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=95.47 E-value=0.038 Score=28.02 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=25.4
Q ss_pred HHHHHHHHhhCC--CCCCcccHHHHHHHHHH
Q 036018 52 FRARRALHHADS--NHDGFIGNDEMKELVIY 80 (89)
Q Consensus 52 ~~~~~~~~~~d~--~~~g~i~~~ef~~~~~~ 80 (89)
..+..+|..+|. +++|.|+.+++..++..
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~ 38 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLET 38 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHH
Confidence 456778999999 89999999999999865
No 101
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=95.38 E-value=0.081 Score=33.68 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=54.3
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhcC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 036018 16 DHMKVLLKRYDKDGDGRLSKKELQAAFRNSG-LHFSGFRARRALHHADSNHDGFIGNDEMKELVIYA 81 (89)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 81 (89)
+.+...|..||.+++|.++..+....+..+. ...+...++..|+.++.+.||.++-.+|..+++..
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~ 325 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVV 325 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHh
Confidence 4577899999999999999998877776654 45567788899999999999999888888777653
No 102
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=95.34 E-value=0.085 Score=32.40 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=47.3
Q ss_pred HHHHh-hcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 036018 20 VLLKR-YDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKE 76 (89)
Q Consensus 20 ~~f~~-~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 76 (89)
+-|.. .|.+.||.++.+|+...+--........++..++..-|.+++..++.++...
T Consensus 284 kEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 284 KEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred HHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHH
Confidence 34554 5999999999999999876566677778889999999999999999998754
No 103
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.29 E-value=0.26 Score=28.56 Aligned_cols=68 Identities=18% Similarity=0.353 Sum_probs=48.5
Q ss_pred CcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc-------CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 036018 10 SIALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNS-------GLHFSGFRARRALHHADSNHDGFIGNDEMKELV 78 (89)
Q Consensus 10 ~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-------~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 78 (89)
...+.++++..+|.+++..+.+.++..|+..++..- +..-+.-++..++... .+.+|.+..++.+.++
T Consensus 90 eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 90 EGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred CCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 445667889999999998888999999999988761 1111223334444443 6778999999887766
No 104
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.02 E-value=0.022 Score=36.15 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=47.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHH---HHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 036018 17 HMKVLLKRYDKDGDGRLSKKELQ---AAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIY 80 (89)
Q Consensus 17 ~~~~~f~~~d~~~~g~i~~~e~~---~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 80 (89)
.++-.|..+|+|.++.|...|++ .++.. ..-...-.+.++..+|.++|..|+++||...+..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k--~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLK--KSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHh--hccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 34557888899999999888765 44443 2234566788899999999999999999988754
No 105
>PF14658 EF-hand_9: EF-hand domain
Probab=94.85 E-value=0.13 Score=25.09 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHhhcCCCC-CcccHHHHHHHHHh
Q 036018 12 ALSEDHMKVLLKRYDKDGD-GRLSKKELQAAFRN 44 (89)
Q Consensus 12 ~~~~~~~~~~f~~~d~~~~-g~i~~~e~~~~l~~ 44 (89)
...+.++..+...+|+++. |.++.++|..+++.
T Consensus 31 ~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 31 SPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred CCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4456689999999999988 99999999988764
No 106
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=94.79 E-value=0.12 Score=27.17 Aligned_cols=63 Identities=17% Similarity=0.136 Sum_probs=40.5
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCC---CCCCcccHHHHHHHHHHHHHh
Q 036018 17 HMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADS---NHDGFIGNDEMKELVIYAARW 84 (89)
Q Consensus 17 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~---~~~g~i~~~ef~~~~~~~~~~ 84 (89)
.+.+-|..+.. +|+|+..+|..++.. .-+.+-+..+|..+.. -..+.|+.+|+..+|..+..-
T Consensus 31 ~VE~RFd~La~--dG~L~rs~Fg~CIGM---~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qisD~ 96 (100)
T PF08414_consen 31 EVEKRFDKLAK--DGLLPRSDFGECIGM---KDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQISDQ 96 (100)
T ss_dssp HHHHHHHHH-B--TTBEEGGGHHHHHT-----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH--
T ss_pred HHHHHHHHhCc--CCcccHHHHHHhcCC---cccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhhcc
Confidence 34555666644 899999999988764 2456666677666522 235789999999999888643
No 107
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=94.48 E-value=0.25 Score=35.32 Aligned_cols=66 Identities=18% Similarity=0.145 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCH-----HHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 036018 15 EDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSG-----FRARRALHHADSNHDGFIGNDEMKELVIY 80 (89)
Q Consensus 15 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 80 (89)
.++++..|..+++...|.++.+++..++..++...-. .++..+.+..+....|.+++.+|...+.+
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 3567889999999988999999999999998766553 34556666677777899999999988854
No 108
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=94.11 E-value=0.4 Score=24.83 Aligned_cols=63 Identities=13% Similarity=0.286 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhc-----------CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 036018 15 EDHMKVLLKRYDKDGDGRLSKKELQAAFRNS-----------GLHFSGFRARRALHHADSNHDGFIGNDEMKELVIY 80 (89)
Q Consensus 15 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-----------~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 80 (89)
.++++-+|..+ .|++|.++...+...+..+ .++..+..++.+|.... ....|+.++|...+..
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHh
Confidence 46788899988 5788999998888776652 22346777888888763 4567999999988754
No 109
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.04 E-value=0.87 Score=32.53 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=53.0
Q ss_pred HHHHHHHHhhc--CCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHh--Cccc
Q 036018 16 DHMKVLLKRYD--KDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARW--GFTV 88 (89)
Q Consensus 16 ~~~~~~f~~~d--~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~--~~~~ 88 (89)
++-.+-+..|+ +.+.|+|+-..-+.++... +++...+.++++..|.|.||+++..||.-.+..+..- |++|
T Consensus 13 ~Er~K~~~qF~~Lkp~~gfitg~qArnfflqS--~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~~l 87 (1118)
T KOG1029|consen 13 EERQKHDAQFGQLKPGQGFITGDQARNFFLQS--GLPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGIQL 87 (1118)
T ss_pred HHHHHHHHHHhccCCCCCccchHhhhhhHHhc--CCChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCCcC
Confidence 33334444443 3557899988888877764 4778889999999999999999999998888776522 6654
No 110
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=93.82 E-value=0.11 Score=35.66 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=43.4
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHH
Q 036018 17 HMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDE 73 (89)
Q Consensus 17 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~e 73 (89)
-+.++|+.+|.+++|.|++.++...+..+..+...+.+.-+|..++.+++ ....++
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-cccccc
Confidence 45789999999999999999998888876666666777778888887776 554443
No 111
>PLN02228 Phosphoinositide phospholipase C
Probab=93.64 E-value=1.1 Score=30.74 Aligned_cols=71 Identities=15% Similarity=0.225 Sum_probs=51.6
Q ss_pred CCCcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcC--CCCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHHH
Q 036018 8 NGSIALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSG--LHFSGFRARRALHHADSN----HDGFIGNDEMKELVIY 80 (89)
Q Consensus 8 ~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~~~~ 80 (89)
.........++..+|..+.. ++.++.+++...+.... ...+.+.+..++..+... ..|.++.+.|..++..
T Consensus 16 ~~~~~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 16 KEKTREPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CcCCCCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 34445577889999999854 35799999999887743 234566778888877543 2367999999998854
No 112
>PLN02222 phosphoinositide phospholipase C 2
Probab=93.40 E-value=0.9 Score=31.26 Aligned_cols=71 Identities=13% Similarity=0.170 Sum_probs=51.4
Q ss_pred CCCcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCC--CCCHHHHHHHHHhhCC-CCCCcccHHHHHHHHHH
Q 036018 8 NGSIALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGL--HFSGFRARRALHHADS-NHDGFIGNDEMKELVIY 80 (89)
Q Consensus 8 ~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~~~~ 80 (89)
.........++..+|..+.. ++.++.++|...|..... ..+.+.+..++..+.. ...+.++++.|..++..
T Consensus 17 ~~~~~~~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 17 RYTASEAPREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred ccccCCCcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 34445566799999999853 479999999999877432 3466777878876532 23566999999998854
No 113
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=92.35 E-value=0.84 Score=23.40 Aligned_cols=55 Identities=18% Similarity=0.200 Sum_probs=40.6
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHh
Q 036018 30 DGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARW 84 (89)
Q Consensus 30 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 84 (89)
+-.+++.++...+.....-....+...+=..+|...++.||.=||-.+.+..+.|
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlFqPw 74 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLFQPW 74 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT--G
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHHhhH
Confidence 4679999999999986544455666777788999999999999998888776655
No 114
>PLN02230 phosphoinositide phospholipase C 4
Probab=92.32 E-value=2 Score=29.76 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=49.0
Q ss_pred CcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCC---CCCHHHHHHHHHhhCC-------CCCCcccHHHHHHHHH
Q 036018 10 SIALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGL---HFSGFRARRALHHADS-------NHDGFIGNDEMKELVI 79 (89)
Q Consensus 10 ~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~-------~~~g~i~~~ef~~~~~ 79 (89)
.......++..+|..+..++ +.++.++|...|..... ..+.+.+..++..+.. -+.+.++++.|..++.
T Consensus 23 ~~~~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~ 101 (598)
T PLN02230 23 TESGPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLF 101 (598)
T ss_pred ccCCCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHc
Confidence 33445678999999995443 79999999999987432 2356667777765422 1234699999999875
Q ss_pred H
Q 036018 80 Y 80 (89)
Q Consensus 80 ~ 80 (89)
.
T Consensus 102 s 102 (598)
T PLN02230 102 S 102 (598)
T ss_pred C
Confidence 4
No 115
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=91.52 E-value=0.71 Score=30.80 Aligned_cols=62 Identities=13% Similarity=0.257 Sum_probs=49.2
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 036018 19 KVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYA 81 (89)
Q Consensus 19 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 81 (89)
...|...+.+..|.|+...|...... +..+....+.+++..++..+.+.+.-++|..++..+
T Consensus 142 ~~~f~k~~~d~~g~it~~~Fi~~~~~-~~~l~~t~~~~~v~~l~~~~~~yl~q~df~~~Lqel 203 (493)
T KOG2562|consen 142 ASTFRKIDGDDTGHITRDKFINYWMR-GLMLTHTRLEQFVNLLIQAGCSYLRQDDFKPYLQEL 203 (493)
T ss_pred hhhhhhhccCcCCceeHHHHHHHHHh-hhhHHHHHHHHHHHHHhccCccceeccccHHHHHHH
Confidence 45778888888999999988887765 444667778888888888888888888888877654
No 116
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=91.32 E-value=0.35 Score=31.55 Aligned_cols=26 Identities=19% Similarity=0.489 Sum_probs=23.5
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHh
Q 036018 19 KVLLKRYDKDGDGRLSKKELQAAFRN 44 (89)
Q Consensus 19 ~~~f~~~d~~~~g~i~~~e~~~~l~~ 44 (89)
..+|..+|.|++|.|+.+||..++..
T Consensus 360 ~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 360 DAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 67899999999999999999988764
No 117
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=90.32 E-value=0.5 Score=23.23 Aligned_cols=30 Identities=10% Similarity=0.285 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 036018 13 LSEDHMKVLLKRYDKDGDGRLSKKELQAAFR 43 (89)
Q Consensus 13 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~ 43 (89)
.+.+++...|+.. .++.++|+..+|+..+.
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 4567899999999 67789999999997654
No 118
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=90.02 E-value=0.61 Score=19.37 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=16.3
Q ss_pred CCcccHHHHHHHHHHHHHh
Q 036018 66 DGFIGNDEMKELVIYAARW 84 (89)
Q Consensus 66 ~g~i~~~ef~~~~~~~~~~ 84 (89)
+|.|+++++..+..++..|
T Consensus 2 ~~~i~~~~~~d~a~rv~~f 20 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNF 20 (33)
T ss_pred CceecHHHHHHHHHHHHHH
Confidence 5789999999999988766
No 119
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=90.00 E-value=0.71 Score=27.64 Aligned_cols=29 Identities=28% Similarity=0.411 Sum_probs=25.1
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 036018 53 RARRALHHADSNHDGFIGNDEMKELVIYA 81 (89)
Q Consensus 53 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 81 (89)
....+|+.+|.+.||.|++.|+..++-++
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL 128 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKL 128 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHh
Confidence 34567999999999999999999998765
No 120
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=89.63 E-value=0.43 Score=25.86 Aligned_cols=31 Identities=13% Similarity=0.090 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 036018 49 FSGFRARRALHHADSNHDGFIGNDEMKELVI 79 (89)
Q Consensus 49 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 79 (89)
++++.++.++.++-.+..|+|.|.||..-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 6788899999999999999999999987664
No 121
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=89.53 E-value=0.62 Score=25.05 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=17.8
Q ss_pred HHHHHHhhcCCCCCcccHHHHHH
Q 036018 18 MKVLLKRYDKDGDGRLSKKELQA 40 (89)
Q Consensus 18 ~~~~f~~~d~~~~g~i~~~e~~~ 40 (89)
+...|..+|.|+||.|+..|...
T Consensus 90 ~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 90 ARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHH-TT-SSSEEHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHHcc
Confidence 56788889999999999998764
No 122
>PLN02952 phosphoinositide phospholipase C
Probab=89.43 E-value=2.2 Score=29.56 Aligned_cols=53 Identities=11% Similarity=0.158 Sum_probs=38.3
Q ss_pred CCCcccHHHHHHHHHhcC--CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 29 GDGRLSKKELQAAFRNSG--LHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 29 ~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
+.|.++.+++....+.+. ....+.++..+|..+..++ +.++.++|..++...+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q 67 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQ 67 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhC
Confidence 457888888877766643 2236788888888886543 5788898888887654
No 123
>PLN02223 phosphoinositide phospholipase C
Probab=87.14 E-value=7.8 Score=26.70 Aligned_cols=71 Identities=10% Similarity=-0.097 Sum_probs=49.2
Q ss_pred CCcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc-----CCCCCHHHHHHHHHhhCCCC--------CCcccHHHHH
Q 036018 9 GSIALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNS-----GLHFSGFRARRALHHADSNH--------DGFIGNDEMK 75 (89)
Q Consensus 9 ~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~--------~g~i~~~ef~ 75 (89)
.......+.++.+|..+. ++.|.++.+.+.+.+..+ ....+.+.++.++..+-... .+.++++.|.
T Consensus 9 ~~~~~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~ 87 (537)
T PLN02223 9 MHPANQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLN 87 (537)
T ss_pred CCCCCCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHH
Confidence 344446788999999984 667899999999888332 23456667777776553222 2559999999
Q ss_pred HHHHH
Q 036018 76 ELVIY 80 (89)
Q Consensus 76 ~~~~~ 80 (89)
.++..
T Consensus 88 ~~L~s 92 (537)
T PLN02223 88 EFLFS 92 (537)
T ss_pred HHhcC
Confidence 88853
No 124
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.90 E-value=0.33 Score=34.69 Aligned_cols=67 Identities=22% Similarity=0.325 Sum_probs=56.0
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 14 SEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 14 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
....+..+|...|.+.+|.|+..+....+.. .+++...+.+.+...+....|.|++++|.-.+..+.
T Consensus 281 d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~ 347 (847)
T KOG0998|consen 281 DKQKYSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLE 347 (847)
T ss_pred HHHHHHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhhhh
Confidence 3445667899999999999999888877765 668889999999999999999999998877776554
No 125
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=85.51 E-value=4.1 Score=21.93 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=39.8
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 036018 20 VLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKE 76 (89)
Q Consensus 20 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 76 (89)
..|..+...++...+..+++.++..++.....+.++.++..+. |+ +.+|.+.
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA 56 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIA 56 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHH
Confidence 3455566677778899999999999999899999999998873 33 4555543
No 126
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=84.96 E-value=1.4 Score=21.68 Aligned_cols=33 Identities=9% Similarity=0.020 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 036018 49 FSGFRARRALHHADSNHDGFIGNDEMKELVIYA 81 (89)
Q Consensus 49 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 81 (89)
++......+...++.-..++|+-++|+..++.+
T Consensus 22 l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 22 LPPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 444445555555544456778888887777653
No 127
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=82.99 E-value=3.1 Score=18.47 Aligned_cols=29 Identities=34% Similarity=0.636 Sum_probs=21.0
Q ss_pred HHHHHHHHhhc-CCCC-CcccHHHHHHHHHh
Q 036018 16 DHMKVLLKRYD-KDGD-GRLSKKELQAAFRN 44 (89)
Q Consensus 16 ~~~~~~f~~~d-~~~~-g~i~~~e~~~~l~~ 44 (89)
..+..+|..|. .+|+ ..++.+|++..+..
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 45677888884 3444 47999999988865
No 128
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.96 E-value=2 Score=29.29 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=30.5
Q ss_pred CcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 036018 10 SIALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNS 45 (89)
Q Consensus 10 ~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 45 (89)
...+...++..++...|.+.||.++..||+.++..+
T Consensus 259 KSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 259 KSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred hccCchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 345566789999999999999999999999988663
No 129
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=82.85 E-value=6.9 Score=30.64 Aligned_cols=58 Identities=17% Similarity=0.254 Sum_probs=42.5
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHh--cCCCCCHHHHHHHHHhhCCCCCCcccHHHH
Q 036018 16 DHMKVLLKRYDKDGDGRLSKKELQAAFRN--SGLHFSGFRARRALHHADSNHDGFIGNDEM 74 (89)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~--~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef 74 (89)
.++..+....|++.+|+|+..+....+-. ...-.+..++...|+.++. +.-.|+.++.
T Consensus 2296 p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~ 2355 (2399)
T KOG0040|consen 2296 PEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA-GKPYVTKEEL 2355 (2399)
T ss_pred hhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc-CCccccHHHH
Confidence 36788888899999999999999886654 2333566688888888877 3344555443
No 130
>PLN02952 phosphoinositide phospholipase C
Probab=81.43 E-value=16 Score=25.65 Aligned_cols=65 Identities=12% Similarity=0.181 Sum_probs=45.2
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcC--CCCCHHHHHHHHHhhC-------CCCCCcccHHHHHHHHH
Q 036018 14 SEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSG--LHFSGFRARRALHHAD-------SNHDGFIGNDEMKELVI 79 (89)
Q Consensus 14 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d-------~~~~g~i~~~ef~~~~~ 79 (89)
...++..+|..+..+ .+.++.++|...|.... ...+.+.+..++..+- ....+.++++.|..++.
T Consensus 36 ~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 36 PPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHc
Confidence 456889999998543 46899999999998743 2355666666655431 11234589999998885
No 131
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=80.98 E-value=2.1 Score=24.00 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=26.4
Q ss_pred CcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCC-------CCCCcccHHHHHHHHHH
Q 036018 31 GRLSKKELQAAFRNSGLHFSGFRARRALHHADS-------NHDGFIGNDEMKELVIY 80 (89)
Q Consensus 31 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~-------~~~g~i~~~ef~~~~~~ 80 (89)
+.|+..||...-.-+. .+...+..+++.+.. +..+.|+|+.|..++..
T Consensus 6 ~~lsp~eF~qLq~y~e--ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~ 60 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSE--YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKT 60 (138)
T ss_dssp S-S-HHHHHHHHHHHH--H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHH
T ss_pred eccCHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHH
Confidence 5677777776555432 234456666666632 23457999999998865
No 132
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.35 E-value=3.3 Score=27.17 Aligned_cols=36 Identities=14% Similarity=0.209 Sum_probs=29.7
Q ss_pred cCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcC
Q 036018 11 IALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSG 46 (89)
Q Consensus 11 ~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~ 46 (89)
++-..+++++.|+.+|+.++|+|+-.-+..++..++
T Consensus 304 ~~~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N 339 (449)
T KOG2871|consen 304 PENPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALN 339 (449)
T ss_pred CCCCCHHHHhhhhccCccCCCeeecHHHHHHHHHhc
Confidence 344467899999999999999999888888877755
No 133
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=75.48 E-value=7.8 Score=20.01 Aligned_cols=50 Identities=20% Similarity=0.146 Sum_probs=28.0
Q ss_pred CCcccHHHHHHHHHhc--CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 036018 30 DGRLSKKELQAAFRNS--GLHFSGFRARRALHHADSNHDGFIGNDEMKELVI 79 (89)
Q Consensus 30 ~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 79 (89)
||.++..|...+-..+ ..+++..+...++..+........++.+|...+.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 64 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIK 64 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6777777665544332 1345666666666665544444455666655543
No 134
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=73.37 E-value=1.7 Score=26.06 Aligned_cols=47 Identities=28% Similarity=0.266 Sum_probs=30.1
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 036018 30 DGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELV 78 (89)
Q Consensus 30 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 78 (89)
||+++-.|+.-+-. ..-+.+.-+...|..+|.+.++.|+++||...+
T Consensus 202 d~~~sh~el~pl~a--p~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 202 DGYLSHTELAPLRA--PLIPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred cccccccccccccC--CcccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 56666555432111 111334556777888999999999999987654
No 135
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=72.79 E-value=32 Score=24.83 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 036018 12 ALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYA 81 (89)
Q Consensus 12 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 81 (89)
.+....+.+.|+..+...++++...++..........+ ++..+|..+..+ .+.++.+++..++...
T Consensus 168 ~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 168 QLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSHG-KEYLSTDDLLRFLEEE 233 (746)
T ss_pred hhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHHHhCC-CCccCHHHHHHHHHHh
Confidence 34445567788888878888999998888777755443 567777776544 6677777777776654
No 136
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=69.12 E-value=5.9 Score=14.70 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=6.3
Q ss_pred CCCCCcccHHHHH
Q 036018 27 KDGDGRLSKKELQ 39 (89)
Q Consensus 27 ~~~~g~i~~~e~~ 39 (89)
.|+||.++.-++.
T Consensus 2 vN~DG~vna~D~~ 14 (21)
T PF00404_consen 2 VNGDGKVNAIDLA 14 (21)
T ss_dssp TTSSSSSSHHHHH
T ss_pred CCCCCcCCHHHHH
Confidence 4455555544443
No 137
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=68.59 E-value=14 Score=26.06 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=34.9
Q ss_pred ccHHHHHHHHHhcC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 33 LSKKELQAAFRNSG-LHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 33 i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
++.+.+..++..+. ...+...+..+|...|.+.+|-|+|.+++.-+..+.
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~ 585 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILK 585 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHH
Confidence 44445555555432 223445568899999999999999999998886654
No 138
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.08 E-value=6.2 Score=28.67 Aligned_cols=66 Identities=21% Similarity=0.271 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 15 EDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 15 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
+.....+|...|..++|.|+..+....+.. ..+....+-+.+...|..+.|.++..+|..-++.+.
T Consensus 10 q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~--s~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva 75 (847)
T KOG0998|consen 10 QPLFDQYFKSADPQGDGRITGAEAVAFLSK--SGLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVA 75 (847)
T ss_pred cchHHHhhhccCcccCCcccHHHhhhhhhc--cccchhhhhccccccccccCCccccccccccchHhh
Confidence 356778999999999999999988877775 446777777888888888889999999988887765
No 139
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=66.90 E-value=52 Score=24.71 Aligned_cols=64 Identities=11% Similarity=0.207 Sum_probs=48.1
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhcC----------CCCCHHHHHHHHHhhCCCC----CCcccHHHHHHHHH
Q 036018 16 DHMKVLLKRYDKDGDGRLSKKELQAAFRNSG----------LHFSGFRARRALHHADSNH----DGFIGNDEMKELVI 79 (89)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~----------~~~~~~~~~~~~~~~d~~~----~g~i~~~ef~~~~~ 79 (89)
.++..+|..+-.+..-+++.+++..++..-. .......+..++..+..+. .|.++.+.|+.++.
T Consensus 221 ~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~ 298 (1189)
T KOG1265|consen 221 PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLM 298 (1189)
T ss_pred hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhh
Confidence 4578899988777778999999999997621 1245667888888887664 57888888887763
No 140
>PHA00003 B internal scaffolding protein
Probab=64.56 E-value=14 Score=19.91 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=29.7
Q ss_pred cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH-HHHHHhCc
Q 036018 45 SGLHFSGFRARRALHHADSNHDGFIGNDEMKELV-IYAARWGF 86 (89)
Q Consensus 45 ~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~-~~~~~~~~ 86 (89)
.+.....+.-.+++..+|.+ +.+|-..||..+- ..+.+|||
T Consensus 78 FGgAtcddksa~iya~FD~~-d~rVQpaEFYRFnD~ei~k~GY 119 (120)
T PHA00003 78 FGGATCDDKSAKIYAQFDPN-DRRVQPAEFYRFNDGEINKYGY 119 (120)
T ss_pred cCCCCcchHHHHHhcccCcc-cceechhHheecccchhhhccc
Confidence 44445555566688888765 5679999998776 46888987
No 141
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=64.13 E-value=16 Score=17.85 Aligned_cols=48 Identities=10% Similarity=0.104 Sum_probs=30.8
Q ss_pred cHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 036018 34 SKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYA 81 (89)
Q Consensus 34 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 81 (89)
+.+++..++...+..++..++..+++.-+..+.-..+=+.+..++.-+
T Consensus 15 ~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~GL 62 (68)
T PF07308_consen 15 KDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLNGL 62 (68)
T ss_pred ChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHHHH
Confidence 445677777777777777877777777655544445555556665543
No 142
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=60.27 E-value=19 Score=17.35 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=29.1
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCC
Q 036018 30 DGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNH 65 (89)
Q Consensus 30 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 65 (89)
++.++..++...+..-+..+++..+...+..++.++
T Consensus 11 ~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 11 DKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred CCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 467888888888887788888888988888887654
No 143
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=59.64 E-value=15 Score=18.35 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=17.6
Q ss_pred hCCCCCCcccHHHHHHHHHHHH
Q 036018 61 ADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 61 ~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
...+..|.|+++.|+..|..++
T Consensus 11 ~~~n~~G~iTl~gfLa~W~l~T 32 (76)
T PF08355_consen 11 VVTNEKGWITLQGFLAQWSLTT 32 (76)
T ss_pred eEEcCCCcCcHHHHHHHHHHHH
Confidence 3457789999999999997654
No 144
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=58.54 E-value=21 Score=17.34 Aligned_cols=32 Identities=13% Similarity=0.179 Sum_probs=24.5
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 036018 30 DGRLSKKELQAAFRNSGLHFSGFRARRALHHA 61 (89)
Q Consensus 30 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 61 (89)
+--|+.+-++......|..+++..++++++..
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34577777888888888888888888887765
No 145
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.30 E-value=44 Score=22.53 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=40.2
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 036018 19 KVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKEL 77 (89)
Q Consensus 19 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 77 (89)
..+|-...+ -+|+|+-..-+..+.. ..++.+.+-.+++..|.+.+|.++-+||.-.
T Consensus 447 de~fy~l~p-~~gk~sg~~ak~~mv~--sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 447 DEIFYTLSP-VNGKLSGRNAKKEMVK--SKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred Hhhhhcccc-cCceeccchhHHHHHh--ccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 445555432 3677776666655443 4577788888999999999999999998643
No 146
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=57.72 E-value=25 Score=19.38 Aligned_cols=20 Identities=30% Similarity=0.189 Sum_probs=8.8
Q ss_pred HHHhhCCCCCCcccHHHHHH
Q 036018 57 ALHHADSNHDGFIGNDEMKE 76 (89)
Q Consensus 57 ~~~~~d~~~~g~i~~~ef~~ 76 (89)
+++.+|.+++|+|+.-+|..
T Consensus 102 Ll~vyD~~rtG~I~vls~Kv 121 (127)
T PF09068_consen 102 LLNVYDSQRTGKIRVLSFKV 121 (127)
T ss_dssp HHHHH-TT--SEEEHHHHHH
T ss_pred HHHHhCCCCCCeeehhHHHH
Confidence 44555555555555555443
No 147
>PRK00523 hypothetical protein; Provisional
Probab=57.71 E-value=23 Score=17.61 Aligned_cols=32 Identities=9% Similarity=0.219 Sum_probs=25.3
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 036018 30 DGRLSKKELQAAFRNSGLHFSGFRARRALHHA 61 (89)
Q Consensus 30 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 61 (89)
+--|+.+-++..+...+..+|+..++++++..
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34577777888888888888888888888776
No 148
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=56.41 E-value=22 Score=23.83 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=35.8
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 036018 30 DGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIY 80 (89)
Q Consensus 30 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 80 (89)
...+++..|..++.......+.-++-.+=...|...++.|+.-||--+-+.
T Consensus 188 k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRL 238 (563)
T KOG1785|consen 188 KTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRL 238 (563)
T ss_pred cccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHh
Confidence 446888889988888654444455555667788888999987776555443
No 149
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.77 E-value=25 Score=17.40 Aligned_cols=32 Identities=6% Similarity=0.139 Sum_probs=24.7
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 036018 30 DGRLSKKELQAAFRNSGLHFSGFRARRALHHA 61 (89)
Q Consensus 30 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 61 (89)
+-.|+.+-++..+...+..+|+..++++++..
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 44677777788888888888888888887765
No 150
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=55.54 E-value=30 Score=18.23 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc-CCCCCHHHHHHHHHhh
Q 036018 12 ALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNS-GLHFSGFRARRALHHA 61 (89)
Q Consensus 12 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~ 61 (89)
.++.+++..+-..+-.++....+..++...+..+ ...++.+++..+-..+
T Consensus 35 ~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~~L 85 (96)
T PF11829_consen 35 RLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIERVRARL 85 (96)
T ss_dssp TS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHHHH
Confidence 3555555555554433333333555555555442 3344455555544433
No 151
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=54.98 E-value=33 Score=18.48 Aligned_cols=49 Identities=12% Similarity=0.264 Sum_probs=31.1
Q ss_pred hhcCCCCCcccHHHHHHHHHhc----------CCCCCHHHHHHHHHhhCCCCCCcccHH
Q 036018 24 RYDKDGDGRLSKKELQAAFRNS----------GLHFSGFRARRALHHADSNHDGFIGND 72 (89)
Q Consensus 24 ~~d~~~~g~i~~~e~~~~l~~~----------~~~~~~~~~~~~~~~~d~~~~g~i~~~ 72 (89)
.||...+.+|+.++++.++..- +..++...+-+++.+....+...++.+
T Consensus 11 LYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~ 69 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTD 69 (107)
T ss_pred ccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHH
Confidence 3677778888999888888762 233455555666666555555555444
No 152
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=53.95 E-value=9.1 Score=24.89 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=22.8
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHh
Q 036018 19 KVLLKRYDKDGDGRLSKKELQAAFRN 44 (89)
Q Consensus 19 ~~~f~~~d~~~~g~i~~~e~~~~l~~ 44 (89)
++.|..+|.|+|.+|+..|+...+..
T Consensus 373 rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 373 RKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred hhcchhcccCCCceecHHHHhhhhcc
Confidence 56788889999999999999988865
No 153
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=52.25 E-value=63 Score=21.43 Aligned_cols=14 Identities=7% Similarity=-0.002 Sum_probs=7.3
Q ss_pred cccHHHHHHHHHHH
Q 036018 68 FIGNDEMKELVIYA 81 (89)
Q Consensus 68 ~i~~~ef~~~~~~~ 81 (89)
|+.|.||+..+..|
T Consensus 42 RL~FNeFi~tma~I 55 (379)
T PF11593_consen 42 RLQFNEFIQTMANI 55 (379)
T ss_pred HHHHHHHHHHHHHh
Confidence 44555555555544
No 154
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=51.47 E-value=46 Score=24.39 Aligned_cols=50 Identities=16% Similarity=0.152 Sum_probs=40.9
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCc
Q 036018 19 KVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGF 68 (89)
Q Consensus 19 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~ 68 (89)
.-++..||+..+|.|..-+|+-.+..+......+....+|+.+..++...
T Consensus 473 N~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq~ 522 (966)
T KOG4286|consen 473 NWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQC 522 (966)
T ss_pred HHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhhH
Confidence 45667899999999999999888777777778888889999997766543
No 155
>PHA02105 hypothetical protein
Probab=51.42 E-value=27 Score=16.58 Aligned_cols=50 Identities=8% Similarity=0.069 Sum_probs=28.0
Q ss_pred cccHHHHHHHHHhc---CCCCCHHHHHHHHHhhCCCC--CCcccHHHHHHHHHHH
Q 036018 32 RLSKKELQAAFRNS---GLHFSGFRARRALHHADSNH--DGFIGNDEMKELVIYA 81 (89)
Q Consensus 32 ~i~~~e~~~~l~~~---~~~~~~~~~~~~~~~~d~~~--~g~i~~~ef~~~~~~~ 81 (89)
+++.+|+..++..- ..++..+.++++-..+...+ --.++|+||..++-.+
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p~i 58 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMPFI 58 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhccccccc
Confidence 35666666666541 23445555555554444333 2357888887776443
No 156
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=51.31 E-value=27 Score=16.53 Aligned_cols=30 Identities=17% Similarity=0.047 Sum_probs=19.3
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 036018 32 RLSKKELQAAFRNSGLHFSGFRARRALHHA 61 (89)
Q Consensus 32 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 61 (89)
.++.+|+...+..+...++..++..+|..+
T Consensus 9 ~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 9 KLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 456667777777766666666666665554
No 157
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=51.16 E-value=19 Score=28.29 Aligned_cols=66 Identities=8% Similarity=0.013 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCC----HHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 036018 13 LSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFS----GFRARRALHHADSNHDGFIGNDEMKELVI 79 (89)
Q Consensus 13 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 79 (89)
..-++..+++..||++..|.|...++...++.+..++. .+. +.+.-.+....+|.|++.+-.-.+.
T Consensus 1414 ~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~ 1483 (1592)
T KOG2301|consen 1414 DDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALT 1483 (1592)
T ss_pred ccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHH
Confidence 33456678899999999999999999999988644322 111 2222223344667777776555543
No 158
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=50.99 E-value=48 Score=19.53 Aligned_cols=37 Identities=30% Similarity=0.380 Sum_probs=22.6
Q ss_pred CCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCC
Q 036018 27 KDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADS 63 (89)
Q Consensus 27 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 63 (89)
.+.+|+++.+++...+..-+...+.+++..+...-++
T Consensus 27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDK 63 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS
T ss_pred cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCC
Confidence 5778999999999888775555678888877766443
No 159
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=50.91 E-value=51 Score=23.43 Aligned_cols=66 Identities=26% Similarity=0.498 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcC--------CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 036018 13 LSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSG--------LHFSGFRARRALHHADSNHDGFIGNDEMKELVI 79 (89)
Q Consensus 13 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~--------~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 79 (89)
..+++++..|..+|. .+|.++.+++..++.... .....+....++...+.+..+.+...++..++.
T Consensus 15 ~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 15 SYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLL 88 (646)
T ss_pred ChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHH
Confidence 345678888999887 889999999988776631 122334456677778888878777777666654
No 160
>PF14178 YppF: YppF-like protein
Probab=50.73 E-value=29 Score=16.62 Aligned_cols=19 Identities=26% Similarity=0.200 Sum_probs=14.4
Q ss_pred CCcccHHHHHHHHHHHHHh
Q 036018 66 DGFIGNDEMKELVIYAARW 84 (89)
Q Consensus 66 ~g~i~~~ef~~~~~~~~~~ 84 (89)
-|.|+..||+.+++-+..-
T Consensus 34 ~gei~i~eYR~lvreLE~~ 52 (60)
T PF14178_consen 34 QGEISINEYRNLVRELEAN 52 (60)
T ss_pred hCcccHHHHHHHHHHHHHh
Confidence 3678888888888877543
No 161
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=50.72 E-value=25 Score=19.62 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=20.7
Q ss_pred CCCCcccHHHHHHHHHHHHHhCcc
Q 036018 64 NHDGFIGNDEMKELVIYAARWGFT 87 (89)
Q Consensus 64 ~~~g~i~~~ef~~~~~~~~~~~~~ 87 (89)
..|+.+.|+++...+..+++-|+.
T Consensus 103 ~aD~~v~y~~vv~vm~~l~~aG~~ 126 (137)
T COG0848 103 RADKNVKYGTVVKVMDLLKEAGFK 126 (137)
T ss_pred EeCCCCCHHHHHHHHHHHHHcCCc
Confidence 357789999999999999988874
No 162
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=49.60 E-value=17 Score=15.19 Aligned_cols=15 Identities=7% Similarity=-0.068 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhC
Q 036018 71 NDEMKELVIYAARWG 85 (89)
Q Consensus 71 ~~ef~~~~~~~~~~~ 85 (89)
|+++..++.++..+|
T Consensus 10 F~dp~~yi~~i~~~g 24 (34)
T PF02375_consen 10 FKDPIKYISSIEPEG 24 (34)
T ss_dssp HS-HHHHHHHHHHTT
T ss_pred HhCHHHHHHHHHHHH
Confidence 345566666666554
No 163
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=49.29 E-value=84 Score=21.54 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh-cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 036018 12 ALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRN-SGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIY 80 (89)
Q Consensus 12 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 80 (89)
.+.-+.++.+-+-.|.|.+|.|+.+|--..++. +...-+...-...| ...|..|+.+|+-..|..
T Consensus 64 klg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~f----H~dD~~ItVedLWeaW~~ 129 (575)
T KOG4403|consen 64 KLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKF----HGDDKHITVEDLWEAWKE 129 (575)
T ss_pred hhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhc----cCCccceeHHHHHHHHHh
Confidence 344456777888889999999998887777765 22222222222222 224567888887666643
No 164
>PRK01844 hypothetical protein; Provisional
Probab=48.72 E-value=35 Score=16.99 Aligned_cols=31 Identities=10% Similarity=0.099 Sum_probs=24.6
Q ss_pred CcccHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 036018 31 GRLSKKELQAAFRNSGLHFSGFRARRALHHA 61 (89)
Q Consensus 31 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 61 (89)
--|+.+-++..+...+..+|+..++++++..
T Consensus 37 Ppine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 37 PPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3577777888888888888888888888776
No 165
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=46.94 E-value=59 Score=19.14 Aligned_cols=58 Identities=14% Similarity=0.131 Sum_probs=31.1
Q ss_pred CcccHHHHHHHHHhcCCCC-CHHHHHHH----HHhhCCCCCCcccHHHHHHHHHHHHHhCccc
Q 036018 31 GRLSKKELQAAFRNSGLHF-SGFRARRA----LHHADSNHDGFIGNDEMKELVIYAARWGFTV 88 (89)
Q Consensus 31 g~i~~~e~~~~l~~~~~~~-~~~~~~~~----~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 88 (89)
..+..=++.+.++.+|... -+.++..+ +.....+..+.-++..-.-.++.++++||.|
T Consensus 45 d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~V 107 (183)
T PF01397_consen 45 DPLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSWDEDNEEIDDLYTTALRFRLLRQHGYYV 107 (183)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTTTTTSHTSSCHHHHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhccccccccCchhHHHHHHHHHHHcCCcc
Confidence 3444456777788777432 24555544 4434333322235666666667789999987
No 166
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=44.94 E-value=44 Score=17.03 Aligned_cols=36 Identities=6% Similarity=-0.060 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 036018 46 GLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYA 81 (89)
Q Consensus 46 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 81 (89)
+...+.+..+.+-+.++......|+|+|++.+....
T Consensus 43 gG~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL~~ 78 (82)
T PF11020_consen 43 GGQIPEKVMDSLSKLYKLAKENNVSFEELCVYALGV 78 (82)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 344555544444444444555679999998876543
No 167
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=43.50 E-value=45 Score=22.06 Aligned_cols=62 Identities=15% Similarity=0.175 Sum_probs=37.4
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhc---CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 036018 18 MKVLLKRYDKDGDGRLSKKELQAAFRNS---GLHFSGFRARRALHHADSNHDGFIGNDEMKELVI 79 (89)
Q Consensus 18 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~---~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 79 (89)
+..+|...-.+.++......+..+-..+ -.++-...+--+|+.+|.+.++.++..|...+..
T Consensus 213 L~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l 277 (434)
T KOG3555|consen 213 LRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIEL 277 (434)
T ss_pred HHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhc
Confidence 4567776533444333333333222211 1223456778899999999999999998877653
No 168
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=43.48 E-value=68 Score=18.86 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=26.7
Q ss_pred CCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhC
Q 036018 27 KDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHAD 62 (89)
Q Consensus 27 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 62 (89)
.|.+|.++.+++...+..-....+.+.+..+...-+
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 477899999999988875445578887777665544
No 169
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=43.13 E-value=42 Score=16.31 Aligned_cols=21 Identities=14% Similarity=0.384 Sum_probs=18.0
Q ss_pred hhcCCCCCcccHHHHHHHHHh
Q 036018 24 RYDKDGDGRLSKKELQAAFRN 44 (89)
Q Consensus 24 ~~d~~~~g~i~~~e~~~~l~~ 44 (89)
.||...+.+|+.+++..++..
T Consensus 11 LYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 11 LYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred cccCCCceeEeHHHHHHHHHC
Confidence 467888899999999998886
No 170
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=41.85 E-value=43 Score=16.02 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=21.8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHHHHhCc
Q 036018 54 ARRALHHADSNHDGFIGNDEMKELVIYAARWGF 86 (89)
Q Consensus 54 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 86 (89)
+..+...+......-+..+|...++.++.+|.+
T Consensus 38 v~~~~~~~N~~~~~PL~~~Ev~~i~kSi~k~~~ 70 (71)
T PF08708_consen 38 VLSLAQAINSNFSPPLPESEVKAIAKSIAKWTW 70 (71)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 444444443333566888888888888888765
No 171
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=41.16 E-value=79 Score=20.93 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=38.8
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 036018 19 KVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVI 79 (89)
Q Consensus 19 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 79 (89)
......+|+.+.|++..--++.++..+..+.-.+..+.+|.... +.+|-+.+-.|.+++.
T Consensus 113 aflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~ 172 (434)
T KOG4301|consen 113 AFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLH 172 (434)
T ss_pred HHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHH
Confidence 33445578888898888877777777655555677777787774 4456544444444444
No 172
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=40.83 E-value=17 Score=18.47 Aligned_cols=24 Identities=4% Similarity=-0.085 Sum_probs=16.4
Q ss_pred hhCCCCCCcccHHHHHHHHHHHHH
Q 036018 60 HADSNHDGFIGNDEMKELVIYAAR 83 (89)
Q Consensus 60 ~~d~~~~g~i~~~ef~~~~~~~~~ 83 (89)
.+..+.+...+|+||..++.++.+
T Consensus 13 RFsl~r~~~~~f~ef~~ll~~lH~ 36 (80)
T cd06403 13 RFSLDRNKPGKFEDFYKLLEHLHH 36 (80)
T ss_pred EEEeccccCcCHHHHHHHHHHHhC
Confidence 344445556788999888887763
No 173
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=39.07 E-value=1.1e+02 Score=19.85 Aligned_cols=14 Identities=7% Similarity=-0.035 Sum_probs=7.8
Q ss_pred CCCHHHHHHHHHhh
Q 036018 48 HFSGFRARRALHHA 61 (89)
Q Consensus 48 ~~~~~~~~~~~~~~ 61 (89)
.++++++-.+.+.+
T Consensus 302 ~itReeal~~v~~~ 315 (343)
T TIGR03573 302 RITREEAIELVKEY 315 (343)
T ss_pred CCCHHHHHHHHHHh
Confidence 35566655555554
No 174
>COG5562 Phage envelope protein [General function prediction only]
Probab=38.67 E-value=29 Score=19.53 Aligned_cols=22 Identities=9% Similarity=0.028 Sum_probs=17.1
Q ss_pred HhhCCCCCCcccHHHHHHHHHH
Q 036018 59 HHADSNHDGFIGNDEMKELVIY 80 (89)
Q Consensus 59 ~~~d~~~~g~i~~~ef~~~~~~ 80 (89)
.....+..|..+|+||+.-+..
T Consensus 79 ~al~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 79 TALRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred HHHHHHhcCCccHHHHHHHHHh
Confidence 4455677899999999987754
No 175
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=38.13 E-value=83 Score=18.26 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 48 HFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 48 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
..+.-.+...|..+-...-+.++|++|...+..+.
T Consensus 53 ~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela 87 (180)
T KOG4070|consen 53 SVTGTDTDIVFSKVKGKKARTITFEEFKKALEELA 87 (180)
T ss_pred cccccccceeeeeccccccccccHHHHHHHHHHHH
Confidence 34444455566665555556788999977776654
No 176
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=37.93 E-value=50 Score=15.70 Aligned_cols=24 Identities=8% Similarity=0.162 Sum_probs=15.2
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHH
Q 036018 32 RLSKKELQAAFRNSGLHFSGFRAR 55 (89)
Q Consensus 32 ~i~~~e~~~~l~~~~~~~~~~~~~ 55 (89)
.|+.++|..++.......+.+++.
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~ 52 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLK 52 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHH
Confidence 367778888887765555555544
No 177
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=37.17 E-value=7.1 Score=15.91 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=8.8
Q ss_pred HHHhhCCCCCCcccHH
Q 036018 57 ALHHADSNHDGFIGND 72 (89)
Q Consensus 57 ~~~~~d~~~~g~i~~~ 72 (89)
+...-|.+++-.|+.+
T Consensus 4 LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 4 LLEQEDTDGNFQITIE 19 (30)
T ss_pred HhhccccCCCcEEEEe
Confidence 4445556666655544
No 178
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=37.15 E-value=1.5e+02 Score=20.82 Aligned_cols=59 Identities=15% Similarity=0.289 Sum_probs=40.6
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhh---CC-----CCCCcccHHHHHHHH
Q 036018 20 VLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHA---DS-----NHDGFIGNDEMKELV 78 (89)
Q Consensus 20 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~---d~-----~~~g~i~~~ef~~~~ 78 (89)
-+|..+.....++++...|..+|+..+...++..+..+|..+ +. ...+.++-+-|..++
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI 156 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCI 156 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhh
Confidence 366666545569999999999999988777766666665443 32 223456777776665
No 179
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=37.14 E-value=58 Score=16.24 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=26.2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCC
Q 036018 16 DHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADS 63 (89)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 63 (89)
..++++...- ...|+|+..++..++.. ..++.+.+..++..+..
T Consensus 7 ~~i~~Li~~g--K~~G~lT~~eI~~~L~~--~~~~~e~id~i~~~L~~ 50 (82)
T PF03979_consen 7 EAIKKLIEKG--KKKGYLTYDEINDALPE--DDLDPEQIDEIYDTLED 50 (82)
T ss_dssp HHHHHHHHHH--HHHSS-BHHHHHHH-S---S---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHH--hhcCcCCHHHHHHHcCc--cCCCHHHHHHHHHHHHH
Confidence 4455555543 34688999999998874 33677778888777643
No 180
>PF02240 MCR_gamma: Methyl-coenzyme M reductase gamma subunit; InterPro: IPR003178 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. This entry represents the gamma subunit, which has a complex alpha-helical/beta-sheet topology.; GO: 0050524 coenzyme-B sulfoethylthiotransferase activity, 0015948 methanogenesis; PDB: 1MRO_C 3M32_C 3POT_F 1HBU_F 3M2U_C 3M2V_C 3M2R_F 1HBM_C 3M1V_C 1HBO_C ....
Probab=36.43 E-value=55 Score=20.00 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH----HhCcc
Q 036018 46 GLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA----RWGFT 87 (89)
Q Consensus 46 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~----~~~~~ 87 (89)
+.+++++++...-..+..++.+.-+-.|.+.++.++. .|||+
T Consensus 201 GkP~~e~~lk~~TTiyr~d~~~~rdD~E~ve~v~~Ih~~Rt~~Gf~ 246 (247)
T PF02240_consen 201 GKPMDEEELKKRTTIYRNDGVAFRDDPEVVEVVQRIHELRTKGGFM 246 (247)
T ss_dssp E----HHHHHHH-----TTSS-GGG-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHhhhceEEeecCccccCcHHHHHHHHHHHHHHhhcccC
Confidence 5667888888877777777777777788888887765 56664
No 181
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=36.07 E-value=68 Score=16.69 Aligned_cols=38 Identities=11% Similarity=0.168 Sum_probs=23.7
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHH
Q 036018 14 SEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRA 57 (89)
Q Consensus 14 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 57 (89)
+++.+...|..+. ..++..+.+.+.+.++ +++.+++.+
T Consensus 2 ~~~~l~~~f~~i~----~~V~~~~Wk~laR~LG--Lse~~I~~i 39 (96)
T cd08315 2 PQETLRRSFDHFI----KEVPFDSWNRLMRQLG--LSENEIDVA 39 (96)
T ss_pred cHhHHHHHHHHHH----HHCCHHHHHHHHHHcC--CCHHHHHHH
Confidence 3566778888772 3456677777777765 455554443
No 182
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=34.43 E-value=51 Score=21.60 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=19.5
Q ss_pred cccHHHHHHHHHHHHHhCcccC
Q 036018 68 FIGNDEMKELVIYAARWGFTVK 89 (89)
Q Consensus 68 ~i~~~ef~~~~~~~~~~~~~~~ 89 (89)
..+|++|......++++|.++|
T Consensus 186 GftF~df~~A~~~ir~~g~~vk 207 (358)
T COG1244 186 GFTFEDFVRAAEIIRNYGAKVK 207 (358)
T ss_pred CCcHHHHHHHHHHHHHcCCcee
Confidence 5799999999999999998875
No 183
>PF07624 PSD2: Protein of unknown function (DUF1585); InterPro: IPR011478 This entry represents a conserved region at the C terminus of a family of cytochrome-like proteins found in bacteria such as Rhodopirellula baltica and Solibacter usitatus. These proteins also contain IPR013036 from INTERPRO, IPR013039 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=34.30 E-value=64 Score=15.87 Aligned_cols=13 Identities=15% Similarity=0.069 Sum_probs=6.5
Q ss_pred cccHHHHHHHHHh
Q 036018 32 RLSKKELQAAFRN 44 (89)
Q Consensus 32 ~i~~~e~~~~l~~ 44 (89)
+=+..+|+..+..
T Consensus 6 f~~~~eLk~~L~~ 18 (76)
T PF07624_consen 6 FEGAAELKQYLAE 18 (76)
T ss_pred cCCHHHHHHHHHH
Confidence 3445555555543
No 184
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=33.94 E-value=85 Score=22.09 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=27.8
Q ss_pred cCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 036018 11 IALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNS 45 (89)
Q Consensus 11 ~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 45 (89)
.....++++.+....+.|.+|.+++++|..++..+
T Consensus 52 g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 52 GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 34556778888888899999999999998866543
No 185
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.57 E-value=1.4e+02 Score=21.30 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=32.8
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 30 DGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 30 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
++ ++.+++. ......++..+.+|..+|. ++|.++-+++..++....
T Consensus 2 ~~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~ 47 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSI 47 (646)
T ss_pred CC-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHH
Confidence 45 7777777 2333456677778888877 788899888888876654
No 186
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=33.23 E-value=74 Score=16.29 Aligned_cols=53 Identities=15% Similarity=0.096 Sum_probs=33.1
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHh
Q 036018 30 DGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARW 84 (89)
Q Consensus 30 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 84 (89)
.|.++.++...+..........+.+..+....... |.=.|.-|+..+...+.|
T Consensus 28 ~~VLt~~d~EeI~~~~t~~~r~~ka~~LLdiL~~r--G~~Af~~F~~aL~~~yp~ 80 (86)
T cd08785 28 CKVLDEQDEEEVLSSPRLPIRANRTGRLLDILATR--GKRGYVAFLESLEFYYPE 80 (86)
T ss_pred cCCCCHHHHHHHhCCCccccHHHHHHHHHHHHHhc--CcchHHHHHHHHHHhCHH
Confidence 57888888777776533333446667777776443 445677777777544444
No 187
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=32.62 E-value=54 Score=15.83 Aligned_cols=17 Identities=29% Similarity=0.171 Sum_probs=12.8
Q ss_pred CCcccHHHHHHHHHHHH
Q 036018 66 DGFIGNDEMKELVIYAA 82 (89)
Q Consensus 66 ~g~i~~~ef~~~~~~~~ 82 (89)
+|.|+++.|+...+.+-
T Consensus 37 ~g~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 37 RGSIDLDTFLKQVRSLA 53 (65)
T ss_dssp TTSS-HHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 57799999988887764
No 188
>PLN02230 phosphoinositide phospholipase C 4
Probab=32.55 E-value=93 Score=22.12 Aligned_cols=32 Identities=6% Similarity=0.153 Sum_probs=21.2
Q ss_pred CHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 50 SGFRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 50 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
+..++..+|..+..++ +.++.++|..+++..+
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q 58 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEG 58 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhC
Confidence 4566777777775333 5777777777776544
No 189
>PF10841 DUF2644: Protein of unknown function (DUF2644); InterPro: IPR020300 This entry is represented by Bacteriophage PY100, Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains membrane proteins with no known function.
Probab=32.52 E-value=62 Score=15.49 Aligned_cols=20 Identities=15% Similarity=0.199 Sum_probs=15.1
Q ss_pred CCCCCcccHHHHHHHHHHHH
Q 036018 63 SNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 63 ~~~~g~i~~~ef~~~~~~~~ 82 (89)
.+.+|++|--.|++++..+-
T Consensus 5 TN~dGrLSTT~~iQffg~lv 24 (60)
T PF10841_consen 5 TNADGRLSTTAFIQFFGALV 24 (60)
T ss_pred cCCCCcEehHHHHHHHHHHH
Confidence 45688998888888876643
No 190
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=32.04 E-value=95 Score=17.16 Aligned_cols=43 Identities=14% Similarity=0.284 Sum_probs=29.3
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhc-CCCCCHHHHHHHHHhh
Q 036018 16 DHMKVLLKRYDKDGDGRLSKKELQAAFRNS-GLHFSGFRARRALHHA 61 (89)
Q Consensus 16 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~ 61 (89)
+++..+|..|- ++.|+.+.+..++... +..++...+..++..+
T Consensus 37 ~Kl~~Il~mFl---~~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~ 80 (122)
T PF06648_consen 37 DKLIKILKMFL---NDEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRV 80 (122)
T ss_pred HHHHHHHHHHH---hCCCCHHHHHHHHhcccHhhcCHHHHHHHHHHH
Confidence 45667777774 4668888888888764 3567777776666554
No 191
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=31.73 E-value=23 Score=19.21 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=21.5
Q ss_pred CCCcccHHHHHHHHHhc--CCCCCHHHHHHHHHhhCCCCCCcccHHHHH
Q 036018 29 GDGRLSKKELQAAFRNS--GLHFSGFRARRALHHADSNHDGFIGNDEMK 75 (89)
Q Consensus 29 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 75 (89)
-||.++.+|...+...+ ....+......+...++.......++.++.
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 84 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELL 84 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 47888888877655543 223334444444444433222234444443
No 192
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=31.62 E-value=1.3e+02 Score=18.77 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=28.6
Q ss_pred CCCCcccHHHHHHHHHhcC--CCCCHHH---HHHHHHhhCCCCCCcccHHHHHHHHHH
Q 036018 28 DGDGRLSKKELQAAFRNSG--LHFSGFR---ARRALHHADSNHDGFIGNDEMKELVIY 80 (89)
Q Consensus 28 ~~~g~i~~~e~~~~l~~~~--~~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~~~~ 80 (89)
.-||.++..|+. ..+.+. ..++.+. +..+|+.- .....++.+|+.-++.
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~---k~~~~~l~~~~~~~~~ 120 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREG---KEPDFPLREKLRQFRS 120 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHh---cccCCCHHHHHHHHHH
Confidence 458999999887 333321 3455655 44455443 3334667777766654
No 193
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=31.58 E-value=80 Score=23.69 Aligned_cols=56 Identities=9% Similarity=0.150 Sum_probs=36.9
Q ss_pred hcCCCCCcccHHHHHHHHHhcCCCCCH-HHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 036018 25 YDKDGDGRLSKKELQAAFRNSGLHFSG-FRARRALHHADSNHDGFIGNDEMKELVIYA 81 (89)
Q Consensus 25 ~d~~~~g~i~~~e~~~~l~~~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 81 (89)
.|......++..+++.++..++...+. ....+-|.+... ..+.++|++|..++..+
T Consensus 153 vd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~~-~k~dlsf~~f~~ly~~l 209 (1267)
T KOG1264|consen 153 VDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTEDGA-RKDDLSFEQFHLLYKKL 209 (1267)
T ss_pred ccchhhhheeHHhhhcccccceEEechHHHHHHHHhHhhh-ccccccHHHHHHHHHHH
Confidence 344455678999999988876654443 233344444433 35679999999998775
No 194
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=31.38 E-value=75 Score=15.80 Aligned_cols=43 Identities=28% Similarity=0.340 Sum_probs=30.1
Q ss_pred cHHHHHHHHHhcCCCCCHHHHHHHHHhhCCC-CCCcccHHHHHHHH
Q 036018 34 SKKELQAAFRNSGLHFSGFRARRALHHADSN-HDGFIGNDEMKELV 78 (89)
Q Consensus 34 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-~~g~i~~~ef~~~~ 78 (89)
+.+++...+. +.+.+.+.+...+...+.. --+.++.+|+.+++
T Consensus 43 ~i~~le~~L~--G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 43 DIEELEEALI--GCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CHHHHHHHHT--TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHH--hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 3566666664 5667888888888887443 33578888887764
No 195
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=31.03 E-value=19 Score=18.20 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=26.4
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCccc
Q 036018 30 DGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIG 70 (89)
Q Consensus 30 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~ 70 (89)
.|+-+.-+|-..+..++..+-+..++.++..+.+. +|.+.
T Consensus 38 S~k~~~p~fPkFLn~LGteIiEnAVefiLrSMtR~-tgF~E 77 (88)
T PF15144_consen 38 SGKNPEPDFPKFLNLLGTEIIENAVEFILRSMTRS-TGFME 77 (88)
T ss_pred cCCCCCCchHHHHHHhhHHHHHHHHHHHHHHhhcc-cCcee
Confidence 34545557888888877777777788887777543 44443
No 196
>PF09808 SNAPc_SNAP43: Small nuclear RNA activating complex (SNAPc), subunit SNAP43; InterPro: IPR019188 Members of this family are part of the SNAPc complex required for the transcription of both RNA polymerase II and III small-nuclear RNA genes. They bind to the proximal sequence element (PSE), a non-TATA-box basal promoter element common to these 2 types of genes. Furthermore, they also recruit TBP and BRF2 to the U6 snRNA TATA box. SNAPc consists of at least four stably associated subunits, SNAP43, SNAP45, SNAP50, and SNAP190. None of the three small subunits can bind to the PSE on their own [].
Probab=30.49 E-value=1.1e+02 Score=18.04 Aligned_cols=14 Identities=14% Similarity=0.057 Sum_probs=7.2
Q ss_pred CcccHHHHHHHHHH
Q 036018 67 GFIGNDEMKELVIY 80 (89)
Q Consensus 67 g~i~~~ef~~~~~~ 80 (89)
+.++|++|..+|+.
T Consensus 17 ~~~~F~~F~~~W~~ 30 (194)
T PF09808_consen 17 ESVRFEDFKRLWRE 30 (194)
T ss_pred CCCCHHHHHHHHHH
Confidence 34555555555543
No 197
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=30.19 E-value=56 Score=17.01 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhCcccC
Q 036018 71 NDEMKELVIYAARWGFTVK 89 (89)
Q Consensus 71 ~~ef~~~~~~~~~~~~~~~ 89 (89)
.+++..+...+.+.||+|+
T Consensus 12 k~~~~~~~~~l~~~G~~l~ 30 (110)
T cd01424 12 KPEAVEIAKRLAELGFKLV 30 (110)
T ss_pred HhHHHHHHHHHHHCCCEEE
Confidence 4667777777777787763
No 198
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=30.02 E-value=83 Score=15.87 Aligned_cols=14 Identities=14% Similarity=0.178 Sum_probs=7.1
Q ss_pred CCcccHHHHHHHHH
Q 036018 30 DGRLSKKELQAAFR 43 (89)
Q Consensus 30 ~g~i~~~e~~~~l~ 43 (89)
+.+++-+++...+.
T Consensus 17 ~~~~SGe~La~~Lg 30 (79)
T COG1654 17 GNFVSGEKLAEELG 30 (79)
T ss_pred CCcccHHHHHHHHC
Confidence 44555555554443
No 199
>PRK14074 rpsF 30S ribosomal protein S6; Provisional
Probab=29.27 E-value=1.5e+02 Score=18.61 Aligned_cols=77 Identities=10% Similarity=0.149 Sum_probs=36.5
Q ss_pred CCCC----CCCCCCcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 036018 1 MPFY----VPRNGSIALSEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKE 76 (89)
Q Consensus 1 ~~~~----~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 76 (89)
||++ ..++.......+.+..-|...=.+..|.+-..|..-+...-....+..+...--... ...-|.|.+|..
T Consensus 1 m~lYE~~fIa~q~ls~~q~e~l~e~~~~~l~~~~~~v~~~e~wG~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (257)
T PRK14074 1 MNLYEFTFIAQQGLLQQEVEEMVQELAVLLKNIKADVMFQQIKGILEKGNDKLTKQELEVRAEDI---KESLIAYSDFLE 77 (257)
T ss_pred CCccceeeeecccccHHHHHHHHHHHHHHHHhcCCeeehhhhhhhhhcccchhhHHHHHhhHHHH---HHHHHHHHHHHH
Confidence 6665 233333333333344444433346667777788777776644444443322111111 112355666665
Q ss_pred HHHH
Q 036018 77 LVIY 80 (89)
Q Consensus 77 ~~~~ 80 (89)
.+.+
T Consensus 78 ~~~~ 81 (257)
T PRK14074 78 DLTK 81 (257)
T ss_pred HHHH
Confidence 5544
No 200
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=29.01 E-value=84 Score=16.72 Aligned_cols=19 Identities=21% Similarity=0.496 Sum_probs=13.3
Q ss_pred CCcccHHHHHHHHHHHHHh
Q 036018 66 DGFIGNDEMKELVIYAARW 84 (89)
Q Consensus 66 ~g~i~~~ef~~~~~~~~~~ 84 (89)
.|.|+-+||..++..++..
T Consensus 27 ~~~is~~ef~~iI~~IN~~ 45 (118)
T PF10256_consen 27 SGYISPEEFEEIINTINQI 45 (118)
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 5677778887777776543
No 201
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=28.76 E-value=52 Score=16.19 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhCcccC
Q 036018 74 MKELVIYAARWGFTVK 89 (89)
Q Consensus 74 f~~~~~~~~~~~~~~~ 89 (89)
+..++..+.+|.|+++
T Consensus 43 ~~~~lt~ltN~YFK~k 58 (68)
T PF04971_consen 43 FFGLLTYLTNLYFKIK 58 (68)
T ss_pred HHHHHHHHhHhhhhhh
Confidence 4566677888888875
No 202
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.01 E-value=1.2e+02 Score=16.96 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=27.3
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHH----HHHHHhhCCCCCCcc
Q 036018 30 DGRLSKKELQAAFRNSGLHFSGFRA----RRALHHADSNHDGFI 69 (89)
Q Consensus 30 ~g~i~~~e~~~~l~~~~~~~~~~~~----~~~~~~~d~~~~g~i 69 (89)
.|.|+.+|-..+|.. ...++.+++ +++|..-|+...|..
T Consensus 53 ~~~iTlqEa~qILnV-~~~ln~eei~k~yehLFevNdkskGGSF 95 (132)
T KOG3442|consen 53 NGKITLQEAQQILNV-KEPLNREEIEKRYEHLFEVNDKSKGGSF 95 (132)
T ss_pred cccccHHHHhhHhCC-CCCCCHHHHHHHHHHHHhccCcccCcce
Confidence 477999998888875 345676666 456666677766654
No 203
>PF00797 Acetyltransf_2: N-acetyltransferase; InterPro: IPR001447 Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30 kDa. It facilitates the transfer of an acetyl group from acetyl coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (Mycobacterium tuberculosis, Mycobacterium smegmatis etc) to Homo sapiens (Human). It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid. NAT catalyses the reaction: Acetyl-coA + arylamine = coA + N-acetylarylamine NAT is the target of a common genetic polymorphism of clinical relevance in humans. The N-acetylation polymorphism is determined by low or high NAT activity in liver. NAT has been implicated in the action and toxicity of amine-containing drugs, and in the susceptibility to cancer and systematic lupus erythematosus. Two highly similar human genes for NAT, termed NAT1 and NAT2, encode genetically invariant and variant NAT proteins, respectively. ; GO: 0016407 acetyltransferase activity, 0008152 metabolic process; PDB: 1W6F_A 1W5R_A 1GX3_D 2PQT_A 2IJA_A 1W4T_A 2BSZ_B 3D9W_B 3LTW_A 3LNB_A ....
Probab=27.66 E-value=1.3e+02 Score=18.03 Aligned_cols=37 Identities=11% Similarity=-0.002 Sum_probs=24.0
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhCcccC
Q 036018 53 RARRALHHADSNHDGFIGNDEMKELVIYAARWGFTVK 89 (89)
Q Consensus 53 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~ 89 (89)
..+.++..+-..+.|..+|+-=.-+...+++.||+++
T Consensus 32 ~~~~i~~kiv~~~rGG~C~elN~lf~~lL~~lGf~v~ 68 (240)
T PF00797_consen 32 DPDAIFDKIVRRGRGGYCFELNGLFYWLLRELGFDVT 68 (240)
T ss_dssp SHHHHHHHHTTTT--B-HHHHHHHHHHHHHHCT-EEE
T ss_pred CHHHHHHHHHhcCCCeEhHHHHHHHHHHHHHCCCeEE
Confidence 3566777776677788988876666677788898763
No 204
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=27.34 E-value=87 Score=19.66 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=15.7
Q ss_pred ccHHHHHHHHHHHHHhCccc
Q 036018 69 IGNDEMKELVIYAARWGFTV 88 (89)
Q Consensus 69 i~~~ef~~~~~~~~~~~~~~ 88 (89)
+.-..+..++.++..|||.|
T Consensus 28 ~~~s~Ys~ll~hvAShGyIV 47 (259)
T PF12740_consen 28 LINSWYSQLLEHVASHGYIV 47 (259)
T ss_pred CCHHHHHHHHHHHHhCceEE
Confidence 44556888999999999865
No 205
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=27.20 E-value=1.9e+02 Score=21.72 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=34.6
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 036018 14 SEDHMKVLLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHA 61 (89)
Q Consensus 14 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 61 (89)
++.+++++++.+++-++++-+++=+..+-..++.......-..+|.++
T Consensus 712 tERRiQrlykvleP~gdsrpDW~Iiq~vA~~lG~~wnY~hpSeIm~Ei 759 (978)
T COG3383 712 TERRIQRLYKVLEPLGDSRPDWEIIQEVANALGAGWNYSHPSEIMDEI 759 (978)
T ss_pred hHHHHHHHHHHhccccCCCccHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 456789999999999999999988777777776655444444444443
No 206
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=27.18 E-value=87 Score=20.98 Aligned_cols=55 Identities=20% Similarity=0.186 Sum_probs=29.7
Q ss_pred HHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCC-cccHHHHHHHHHHHH
Q 036018 22 LKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDG-FIGNDEMKELVIYAA 82 (89)
Q Consensus 22 f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g-~i~~~ef~~~~~~~~ 82 (89)
+..||.+..+ ++++.+...+.....+. --++..+..+.+| .++.++|.+++..+.
T Consensus 147 Y~Yyd~~~~~-~df~~mla~L~~a~~~~-----vvLLH~CcHNPTG~D~t~~qW~~l~~~~~ 202 (396)
T COG1448 147 YPYYDAETKG-LDFDGMLADLKTAPEGS-----VVLLHGCCHNPTGIDPTEEQWQELADLIK 202 (396)
T ss_pred eecccccccc-ccHHHHHHHHHhCCCCC-----EEEEecCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4445555444 66666666666543221 0123344555555 467777777776654
No 207
>PF02304 Phage_B: Scaffold protein B; InterPro: IPR003513 This is a family of proteins from single-stranded DNA bacteriophages. Scaffold proteins B and D are required for procapsid formation. Sixty copies of the internal scaffold protein B are found in the procapsid.; GO: 0019069 viral capsid assembly, 0046729 viral procapsid; PDB: 1CD3_B 1AL0_B.
Probab=27.09 E-value=10 Score=20.35 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=14.0
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHH-HHHHHhCc
Q 036018 55 RRALHHADSNHDGFIGNDEMKELV-IYAARWGF 86 (89)
Q Consensus 55 ~~~~~~~d~~~~g~i~~~ef~~~~-~~~~~~~~ 86 (89)
-+.+..+|.. +.+|-..||..+- .++.+|||
T Consensus 85 ~~~ya~FD~~-d~rVQ~aEFYRFnD~~~~k~GY 116 (117)
T PF02304_consen 85 AEIYASFDEK-DTRVQPAEFYRFNDGEIKKWGY 116 (117)
T ss_dssp HHHCCH--TT---S--TTTS-----HHHHCTS-
T ss_pred HHHhhccCcc-cceechhHheeeccchhhcccc
Confidence 3456666654 5678888887776 57889987
No 208
>PF07574 SMC_Nse1: Nse1 non-SMC component of SMC5-6 complex; InterPro: IPR011513 Saccharomyces cerevisiae Nse1 (Q07913 from SWISSPROT) forms part of a complex with SMC5-SMC6. This non-structural maintenance of chromosomes (SMC) complex plays an essential role in genomic stability, being involved in DNA repair and DNA metabolism [, ]. It is conserved in eukaryotes from yeast to human.; PDB: 3NW0_A.
Probab=26.68 E-value=74 Score=18.82 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=12.1
Q ss_pred ccHHHHHHHHH-HHHHhCcccC
Q 036018 69 IGNDEMKELVI-YAARWGFTVK 89 (89)
Q Consensus 69 i~~~ef~~~~~-~~~~~~~~~~ 89 (89)
-.+++|+.-++ .+..++|+|+
T Consensus 44 ~~l~~~I~~IN~~L~~l~~~Ir 65 (200)
T PF07574_consen 44 DDLDEFINEINSKLSPLDFEIR 65 (200)
T ss_dssp --HHHHHHHHHHHHGGGTEEEE
T ss_pred HHHHHHHHHHHHhhhhcCcEEE
Confidence 35666666665 3556687764
No 209
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=26.59 E-value=1.8e+02 Score=18.52 Aligned_cols=35 Identities=11% Similarity=0.130 Sum_probs=24.6
Q ss_pred HHHHHHHhhCC--CCCCcccHHHHHHHHHHHHHhCcc
Q 036018 53 RARRALHHADS--NHDGFIGNDEMKELVIYAARWGFT 87 (89)
Q Consensus 53 ~~~~~~~~~d~--~~~g~i~~~ef~~~~~~~~~~~~~ 87 (89)
.+..++..... .....++.+||+.+.+.+.++|..
T Consensus 256 ~~~~~l~~~~~~~~R~e~l~~~~f~~L~~~~~~~~~~ 292 (294)
T PTZ00338 256 FIAEILEDSGMFEKRSVKLDIDDFLKLLLAFNKKGIH 292 (294)
T ss_pred HHHHHHHHcCCcccChhhCCHHHHHHHHHHHHHcCcc
Confidence 34455555433 334579999999999999998854
No 210
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=26.30 E-value=1.1e+02 Score=16.43 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=19.9
Q ss_pred CCCcccHHHHHHHHHHHHHhCcc
Q 036018 65 HDGFIGNDEMKELVIYAARWGFT 87 (89)
Q Consensus 65 ~~g~i~~~ef~~~~~~~~~~~~~ 87 (89)
.|+.++|..+...+..+++-|++
T Consensus 100 aD~~~~~~~vv~vmd~~~~~G~~ 122 (129)
T TIGR02801 100 ADKTVPYGEVIKVMALLKQAGIE 122 (129)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCC
Confidence 56789999999999999988774
No 211
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=26.23 E-value=1.3e+02 Score=17.00 Aligned_cols=13 Identities=31% Similarity=0.263 Sum_probs=9.6
Q ss_pred cHHHHHHHHHHHH
Q 036018 70 GNDEMKELVIYAA 82 (89)
Q Consensus 70 ~~~ef~~~~~~~~ 82 (89)
+|+++..++..+-
T Consensus 44 ~~~~mL~~ln~i~ 56 (141)
T PF12588_consen 44 DYDEMLQLLNHIM 56 (141)
T ss_pred cHHHHHHHHHHHH
Confidence 7788888877663
No 212
>PHA00649 hypothetical protein
Probab=26.09 E-value=97 Score=15.34 Aligned_cols=22 Identities=18% Similarity=0.129 Sum_probs=10.0
Q ss_pred HHHHHHhhcCCCCCcccHHHHH
Q 036018 18 MKVLLKRYDKDGDGRLSKKELQ 39 (89)
Q Consensus 18 ~~~~f~~~d~~~~g~i~~~e~~ 39 (89)
+.+.|..+..|-+---..+||+
T Consensus 19 V~~~~~~LGVD~~~P~~VEEFr 40 (83)
T PHA00649 19 VKKVFAILGVDVDVPEQVEEFR 40 (83)
T ss_pred HHHHHHHHcCCCCCHHHHHHHH
Confidence 3455555544444333334443
No 213
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=25.78 E-value=51 Score=16.87 Aligned_cols=13 Identities=46% Similarity=0.575 Sum_probs=5.7
Q ss_pred CCcccHHHHHHHH
Q 036018 30 DGRLSKKELQAAF 42 (89)
Q Consensus 30 ~g~i~~~e~~~~l 42 (89)
||.++..|...+.
T Consensus 16 DG~v~~~E~~~i~ 28 (111)
T cd07176 16 DGDIDDAELQAIE 28 (111)
T ss_pred ccCCCHHHHHHHH
Confidence 4444444444333
No 214
>PF10891 DUF2719: Protein of unknown function (DUF2719); InterPro: IPR020122 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf56; it is a family of uncharacterised viral proteins.
Probab=25.65 E-value=94 Score=15.77 Aligned_cols=18 Identities=22% Similarity=-0.012 Sum_probs=13.5
Q ss_pred CCCcccHHHHHHHHHHHH
Q 036018 65 HDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 65 ~~g~i~~~ef~~~~~~~~ 82 (89)
..+.||++||..+-....
T Consensus 32 APmSIS~eeY~~LH~~fN 49 (81)
T PF10891_consen 32 APMSISFEEYIRLHIKFN 49 (81)
T ss_pred cccEeeHHHHHHHHHHHH
Confidence 456799999988876654
No 215
>PF04444 Dioxygenase_N: Catechol dioxygenase N terminus; InterPro: IPR007535 This domain is the N-terminal region of catechol, chlorocatechol or hydroxyquinol 1,2-dioxygenase proteins. This region is always found adjacent to the dioxygenase domain (IPR000627 from INTERPRO). Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0005506 iron ion binding, 0018576 catechol 1,2-dioxygenase activity, 0009712 catechol-containing compound metabolic process, 0055114 oxidation-reduction process; PDB: 3O6R_B 1S9A_A 3O6J_A 3O5U_B 3O32_B 3HHY_A 3HHX_A 3HJS_A 3HJQ_A 3HKP_A ....
Probab=25.37 E-value=77 Score=15.76 Aligned_cols=18 Identities=28% Similarity=0.235 Sum_probs=11.8
Q ss_pred cccHHHHHHHHHHHHHhC
Q 036018 68 FIGNDEMKELVIYAARWG 85 (89)
Q Consensus 68 ~i~~~ef~~~~~~~~~~~ 85 (89)
.|+.+||...+..+.+-|
T Consensus 23 ~lT~~E~~~av~~L~~~G 40 (74)
T PF04444_consen 23 DLTEDEWWAAVDFLNRVG 40 (74)
T ss_dssp T--HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 588899888887776544
No 216
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=25.28 E-value=43 Score=22.16 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=16.3
Q ss_pred CCCCcccHHHHHHHHHHHHHhCc
Q 036018 64 NHDGFIGNDEMKELVIYAARWGF 86 (89)
Q Consensus 64 ~~~g~i~~~ef~~~~~~~~~~~~ 86 (89)
..+|.|++.+|.+.+-.-.++||
T Consensus 13 ~~~g~i~f~~fM~~~L~~p~~GY 35 (370)
T COG1565 13 AQGGPISFSDFMELALYDPEHGY 35 (370)
T ss_pred hcCCCccHHHHHHHHHcCCCCcc
Confidence 34678888888888876655544
No 217
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=24.61 E-value=1.3e+02 Score=18.72 Aligned_cols=26 Identities=27% Similarity=0.169 Sum_probs=19.9
Q ss_pred CCCCcccHHHHHHHHHHHHHhCcccC
Q 036018 64 NHDGFIGNDEMKELVIYAARWGFTVK 89 (89)
Q Consensus 64 ~~~g~i~~~ef~~~~~~~~~~~~~~~ 89 (89)
++.-.|+.++...++..+++.|++++
T Consensus 92 ~G~~~i~~~~~~rlI~~~~~~g~~v~ 117 (237)
T TIGR03849 92 DGSMEISLEERCNLIERAKDNGFMVL 117 (237)
T ss_pred CCccCCCHHHHHHHHHHHHhCCCeEe
Confidence 34456788889999999888888764
No 218
>COG3747 Phage terminase, small subunit [DNA replication, recombination, and repair]
Probab=24.51 E-value=76 Score=18.27 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=16.5
Q ss_pred ccHHHHHHHHHHHHHhCccc
Q 036018 69 IGNDEMKELVIYAARWGFTV 88 (89)
Q Consensus 69 i~~~ef~~~~~~~~~~~~~~ 88 (89)
+.|+-+++.+.+++.+||.|
T Consensus 78 ~~ysiY~~av~~lkk~G~ii 97 (160)
T COG3747 78 VAYSIYRNAVAHLKKHGFII 97 (160)
T ss_pred HHHHHHHHHHHHHHHcceee
Confidence 56888888889998888765
No 219
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=24.46 E-value=1.1e+02 Score=15.36 Aligned_cols=50 Identities=8% Similarity=0.056 Sum_probs=34.7
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHh
Q 036018 30 DGRLSKKELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARW 84 (89)
Q Consensus 30 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 84 (89)
+|.|+.++...+-. .+.+.+.++.++..... -|...+..|+..+.....+
T Consensus 27 ~~Vit~e~~~~I~a---~~T~~~kar~Lld~l~~--kG~~A~~~F~~~L~e~~p~ 76 (82)
T cd08330 27 KKVITQEQYSEVRA---EKTNQEKMRKLFSFVRS--WGASCKDIFYQILREEEPY 76 (82)
T ss_pred CCCCCHHHHHHHHc---CCCcHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhChH
Confidence 57788777665554 33567778888888754 4677888888888655444
No 220
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.09 E-value=1.5e+02 Score=16.95 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=34.0
Q ss_pred HHHHhhcCCCCCcccHHHHH---HHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 036018 20 VLLKRYDKDGDGRLSKKELQ---AAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMKELVI 79 (89)
Q Consensus 20 ~~f~~~d~~~~g~i~~~e~~---~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 79 (89)
-+|+..+.| |.++..|.. .++.. ..+++...+..+......-+...+++-.|-..+.
T Consensus 34 Llf~Vm~AD--G~v~~~E~~a~r~il~~-~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~ 93 (148)
T COG4103 34 LLFHVMEAD--GTVSESEREAFRAILKE-NFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLK 93 (148)
T ss_pred HHHHHHhcc--cCcCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 577777655 444544443 33333 4567778887777666555555666666655554
No 221
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=24.05 E-value=66 Score=17.71 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=11.9
Q ss_pred HHHHHHH-HHHHHhCccc
Q 036018 72 DEMKELV-IYAARWGFTV 88 (89)
Q Consensus 72 ~ef~~~~-~~~~~~~~~~ 88 (89)
+.|-..+ ..++.|||-|
T Consensus 35 d~Fg~aL~~~LR~~GYaV 52 (121)
T PF07283_consen 35 DPFGQALENALRAKGYAV 52 (121)
T ss_pred ChHHHHHHHHHHhcCcEE
Confidence 4564444 6789999976
No 222
>PLN03138 Protein TOC75; Provisional
Probab=24.04 E-value=3.1e+02 Score=20.49 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHh
Q 036018 49 FSGFRARRALHHADSNHDGFIGNDEMKELVIYAARW 84 (89)
Q Consensus 49 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 84 (89)
++.+.++++|..+- +.|.++.+++......|+.|
T Consensus 280 Lp~~v~~e~f~~~~--~~gklN~e~Lq~die~I~~~ 313 (796)
T PLN03138 280 LPKSVRREVLGMLR--DQGKVSARLLQRIRDRVQKW 313 (796)
T ss_pred cchHHHHHHHhhhc--cCCcCCHHHHHHHHHHHHHH
Confidence 56677777887762 34568889888888887765
No 223
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=23.75 E-value=1.4e+02 Score=16.26 Aligned_cols=41 Identities=10% Similarity=0.018 Sum_probs=30.9
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 036018 21 LLKRYDKDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHA 61 (89)
Q Consensus 21 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 61 (89)
.|...-..++..++.+++..++...+.......+..+++.+
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L 48 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSL 48 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 33344445666789999999999988888888787777777
No 224
>PRK10867 signal recognition particle protein; Provisional
Probab=23.64 E-value=1.8e+02 Score=19.80 Aligned_cols=19 Identities=11% Similarity=0.135 Sum_probs=14.7
Q ss_pred CCcccHHHHHHHHHHHHHh
Q 036018 66 DGFIGNDEMKELVIYAARW 84 (89)
Q Consensus 66 ~g~i~~~ef~~~~~~~~~~ 84 (89)
.|..+++||..-+..+.+-
T Consensus 325 ~g~f~l~d~~~q~~~~~km 343 (433)
T PRK10867 325 KGKFDLEDFLEQLQQMKKM 343 (433)
T ss_pred hCCCCHHHHHHHHHHHHhc
Confidence 3678899998888877654
No 225
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=23.53 E-value=66 Score=18.36 Aligned_cols=17 Identities=18% Similarity=0.532 Sum_probs=12.5
Q ss_pred HHHHHHH-HHHHHhCccc
Q 036018 72 DEMKELV-IYAARWGFTV 88 (89)
Q Consensus 72 ~ef~~~~-~~~~~~~~~~ 88 (89)
++|-..+ ..++.|||-|
T Consensus 68 d~Fg~aL~~aLr~~GYaV 85 (145)
T PRK13835 68 SPFGQALEAALKGWGYAV 85 (145)
T ss_pred cHHHHHHHHHHHhcCeEE
Confidence 5785544 6789999975
No 226
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=23.40 E-value=1.5e+02 Score=20.30 Aligned_cols=32 Identities=9% Similarity=0.058 Sum_probs=20.1
Q ss_pred CHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHh
Q 036018 50 SGFRARRALHHADSNHDGFIGNDEMKELVIYAARW 84 (89)
Q Consensus 50 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 84 (89)
++++.+.+...+ ..|..+++||..-+..+.+-
T Consensus 311 d~e~a~~~~~kl---~~g~FtL~Df~~Ql~~m~km 342 (451)
T COG0541 311 DEEEAEKLAEKL---KKGKFTLEDFLEQLEQMKKM 342 (451)
T ss_pred hHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHcc
Confidence 334444444444 34668999998888777654
No 227
>KOG2725 consensus Cytochrome oxidase assembly factor COX15 [Posttranslational modification, protein turnover, chaperones]
Probab=23.33 E-value=2.3e+02 Score=18.95 Aligned_cols=36 Identities=11% Similarity=0.230 Sum_probs=26.1
Q ss_pred CCCcCCCHHHHHHHHHhhcCCC-----CCcccHHHHHHHHH
Q 036018 8 NGSIALSEDHMKVLLKRYDKDG-----DGRLSKKELQAAFR 43 (89)
Q Consensus 8 ~~~~~~~~~~~~~~f~~~d~~~-----~g~i~~~e~~~~l~ 43 (89)
...++.+++++.+-|..|.+.+ +..++.+||+.++.
T Consensus 107 ~~~Pp~~qeeW~~EFekYkqsPEfK~lN~~Mtl~EFKfIf~ 147 (411)
T KOG2725|consen 107 EMKPPTSQEEWEEEFEKYKQSPEFKLLNSHMTLDEFKFIFF 147 (411)
T ss_pred CcCCCCchHHHHHHHHHHhcCcchhhhccCCcHHHHHHHHH
Confidence 4456677899999999886554 35678888887654
No 228
>PF02472 ExbD: Biopolymer transport protein ExbD/TolR; InterPro: IPR003400 This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria []. The family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2JWL_A 2JWK_A 2PFU_A.
Probab=23.20 E-value=1.3e+02 Score=15.96 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=16.5
Q ss_pred CCCcccHHHHHHHHHHHHHhCcc
Q 036018 65 HDGFIGNDEMKELVIYAARWGFT 87 (89)
Q Consensus 65 ~~g~i~~~ef~~~~~~~~~~~~~ 87 (89)
.++.+.|+.+..++..++..|+.
T Consensus 99 aD~~~~y~~vv~vl~~l~~~g~~ 121 (130)
T PF02472_consen 99 ADKDAPYQDVVDVLDALREAGFT 121 (130)
T ss_dssp E-TTS-HHHHHHHHHHHHHTT--
T ss_pred eCCCCCHHHHHHHHHHHHHcCCC
Confidence 45678999999999999888764
No 229
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=22.76 E-value=89 Score=13.73 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=21.4
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHH
Q 036018 36 KELQAAFRNSGLHFSGFRARRALHHADSNHDGFIGNDEMK 75 (89)
Q Consensus 36 ~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 75 (89)
+|...++..+| .+..++..+...... ...++.++.+
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~i 39 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELI 39 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHH
Confidence 46666777666 567777777777754 2335556544
No 230
>cd00539 MCR_gamma Methyl-coenzyme M reductase (MCR) gamma subunit. MCR catalyzes the terminal step of methane formation in the energy metabolism of all methanogenic archaea, in which methyl-coenzyme M and coenzyme B are converted to methane and the heterodisulfide of coenzyme M and coenzyme B (CoM-S-S-CoB). MCR is a dimer of trimers, each of which consists of one alpha, one beta, and one gamma subunit, with two identical active sites containing nickel porphinoid factor 430 (F430).
Probab=22.36 E-value=1.6e+02 Score=18.13 Aligned_cols=43 Identities=14% Similarity=0.083 Sum_probs=29.3
Q ss_pred cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH----HhCcc
Q 036018 45 SGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA----RWGFT 87 (89)
Q Consensus 45 ~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~----~~~~~ 87 (89)
++.+++++++...-..+..++...-+-.|.+.++..++ .+||+
T Consensus 199 ~GkPl~e~~Lk~~TTiyr~d~~~~rdD~E~~~~v~~Ih~~RT~~Gf~ 245 (246)
T cd00539 199 LGKPLPEEELKKRTTIYRVDGVAMRDDEEAVEVVQRIHWLRTLGGFQ 245 (246)
T ss_pred CCCcCCHHHHhhhceEEEecCccccCcHHHHHHHHHHHHHHhhcCcC
Confidence 46678888887776666656555556677777777765 55664
No 231
>PRK11024 colicin uptake protein TolR; Provisional
Probab=22.27 E-value=1.5e+02 Score=16.34 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=19.9
Q ss_pred CCCcccHHHHHHHHHHHHHhCcc
Q 036018 65 HDGFIGNDEMKELVIYAARWGFT 87 (89)
Q Consensus 65 ~~g~i~~~ef~~~~~~~~~~~~~ 87 (89)
.|+.+.|..+..++..+++-|++
T Consensus 110 aD~~~~~~~vv~vmd~~k~aG~~ 132 (141)
T PRK11024 110 GAKDVPYDEIIKALNLLHSAGVK 132 (141)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCC
Confidence 56789999999999999988774
No 232
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=22.09 E-value=1.6e+02 Score=20.00 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=15.3
Q ss_pred CCcccHHHHHHHHHHHHHh
Q 036018 66 DGFIGNDEMKELVIYAARW 84 (89)
Q Consensus 66 ~g~i~~~ef~~~~~~~~~~ 84 (89)
.|..+++||..-+..+.+-
T Consensus 324 ~~~f~l~D~~~q~~~i~km 342 (429)
T TIGR01425 324 EGTFTLRDMYEQFQNLLKM 342 (429)
T ss_pred hCCCCHHHHHHHHHHHHhc
Confidence 4789999999988887654
No 233
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=21.49 E-value=1.2e+02 Score=15.57 Aligned_cols=13 Identities=46% Similarity=0.480 Sum_probs=7.8
Q ss_pred ccHHHHHHHHHhc
Q 036018 33 LSKKELQAAFRNS 45 (89)
Q Consensus 33 i~~~e~~~~l~~~ 45 (89)
-+-.|+..+++..
T Consensus 56 SS~~EL~EA~rl~ 68 (83)
T cd06404 56 SSQMELEEAFRLY 68 (83)
T ss_pred cCHHHHHHHHHHH
Confidence 3456777666653
No 234
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=21.49 E-value=2.1e+02 Score=19.45 Aligned_cols=31 Identities=10% Similarity=0.105 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHh
Q 036018 51 GFRARRALHHADSNHDGFIGNDEMKELVIYAARW 84 (89)
Q Consensus 51 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 84 (89)
+++...+....- .|..+++||...+..+.+-
T Consensus 312 ~~~~~~~~~~~~---~~~f~l~d~~~q~~~~~km 342 (428)
T TIGR00959 312 EEEAKKLAEKMK---KGQFDLEDFLEQLRQIKKM 342 (428)
T ss_pred HHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhc
Confidence 333444444442 4678999998888877654
No 235
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=21.39 E-value=82 Score=16.60 Aligned_cols=20 Identities=10% Similarity=0.210 Sum_probs=14.5
Q ss_pred cHHHHHHHHHHHHHhCcccC
Q 036018 70 GNDEMKELVIYAARWGFTVK 89 (89)
Q Consensus 70 ~~~ef~~~~~~~~~~~~~~~ 89 (89)
+..++..+...+.+.||+|+
T Consensus 11 dk~~~~~~a~~l~~~G~~i~ 30 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKLY 30 (116)
T ss_pred cchhHHHHHHHHHHCCCEEE
Confidence 34667777788888888763
No 236
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=21.10 E-value=2.2e+02 Score=17.60 Aligned_cols=35 Identities=11% Similarity=0.217 Sum_probs=29.2
Q ss_pred CCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 036018 27 KDGDGRLSKKELQAAFRNSGLHFSGFRARRALHHA 61 (89)
Q Consensus 27 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 61 (89)
-+++|-++..++..-+.++...++..++..+-+.+
T Consensus 162 G~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~RL 196 (224)
T PF13829_consen 162 GNGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNKRL 196 (224)
T ss_pred cCCCCceeHHHHHHHHHhCCccCCHHHHHHHHHHH
Confidence 46788999999999999988889998887776554
No 237
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=21.08 E-value=1.1e+02 Score=14.08 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=18.5
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHH
Q 036018 30 DGRLSKKELQAAFRNSGLHFSGFRARRAL 58 (89)
Q Consensus 30 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 58 (89)
+|.|+..|+..-+.......+..++..++
T Consensus 21 ~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~ 49 (53)
T PF08044_consen 21 EGRLSLDEFDERLDAAYAARTRGELDALF 49 (53)
T ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 78888888877665544444555555544
No 238
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=20.97 E-value=84 Score=12.80 Aligned_cols=13 Identities=15% Similarity=0.207 Sum_probs=9.0
Q ss_pred cHHHHHHHHHHHH
Q 036018 70 GNDEMKELVIYAA 82 (89)
Q Consensus 70 ~~~ef~~~~~~~~ 82 (89)
+-.+|+.+.++++
T Consensus 11 d~~~Fr~lVQ~LT 23 (31)
T PF05678_consen 11 DPSNFRALVQRLT 23 (31)
T ss_pred CHHHHHHHHHHhH
Confidence 4567777777765
No 239
>PF14423 Imm5: Immunity protein Imm5
Probab=20.80 E-value=2e+02 Score=17.13 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=18.4
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhcCC
Q 036018 19 KVLLKRYDKDGDGRLSKKELQAAFRNSGL 47 (89)
Q Consensus 19 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~ 47 (89)
.++-.....++.|.|+..--..+++.++.
T Consensus 4 ekl~~eI~~s~~GhL~Lp~R~~l~r~ig~ 32 (183)
T PF14423_consen 4 EKLKEEINQSPEGHLSLPLRVKLWRAIGS 32 (183)
T ss_pred HHHHHHHHcCCCCccCchHHHHHHHHhCC
Confidence 34444555678888887766666666543
No 240
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=20.69 E-value=2.1e+02 Score=19.42 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=15.4
Q ss_pred CCcccHHHHHHHHHHHHHhC
Q 036018 66 DGFIGNDEMKELVIYAARWG 85 (89)
Q Consensus 66 ~g~i~~~ef~~~~~~~~~~~ 85 (89)
.|..+++||..-+..+.+-|
T Consensus 317 ~~~f~l~d~~~q~~~~~kmG 336 (437)
T PRK00771 317 KGKFTLKDMYKQLEAMNKMG 336 (437)
T ss_pred cCCcCHHHHHHHHHHHHhcC
Confidence 46789999998888776543
No 241
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=20.66 E-value=1.3e+02 Score=18.00 Aligned_cols=30 Identities=7% Similarity=0.399 Sum_probs=21.8
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhcCC
Q 036018 18 MKVLLKRYDKDGDGRLSKKELQAAFRNSGL 47 (89)
Q Consensus 18 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~ 47 (89)
.+.+|..||++.=-..+.+++.+++...+.
T Consensus 57 freaF~~Fd~~kVA~~~~~dverLl~d~gI 86 (188)
T COG2818 57 FREAFHGFDPEKVAAMTEEDVERLLADAGI 86 (188)
T ss_pred HHHHHhcCCHHHHHcCCHHHHHHHHhCcch
Confidence 567888888776667777888877776443
No 242
>TIGR03259 met_CoM_red_gam methyl-coenzyme M reductase, gamma subunit. Members of this protein family are the gamma subunit of methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). This enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes.
Probab=20.32 E-value=1.8e+02 Score=17.86 Aligned_cols=38 Identities=13% Similarity=0.051 Sum_probs=27.4
Q ss_pred cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 036018 45 SGLHFSGFRARRALHHADSNHDGFIGNDEMKELVIYAA 82 (89)
Q Consensus 45 ~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 82 (89)
++.+++++++...-..+..++.+.-+-.|.+.++..++
T Consensus 199 ~GkPl~e~~Lk~~TTiyr~d~~~~rdD~E~~~~v~~Ih 236 (244)
T TIGR03259 199 LGEPLSEEELKKITTIYRVDNVAMRDDAEVVEVVHRIH 236 (244)
T ss_pred CCCcCCHHHHhhhceEEEecCccccCcHHHHHHHHHHH
Confidence 46678888888776666666666666777888887765
No 243
>PF09820 AAA-ATPase_like: Predicted AAA-ATPase; InterPro: IPR018631 This entry is predicted to be an AAA-ATPase domain []. It is usually found together with IPR012547 from INTERPRO.
Probab=20.05 E-value=1.4e+02 Score=18.72 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHh--Ccc
Q 036018 48 HFSGFRARRALHHADSNHDGFIGNDEMKELVIYAARW--GFT 87 (89)
Q Consensus 48 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~--~~~ 87 (89)
+.++++++.+++.+-.......+ ....+..+++| ||.
T Consensus 224 GFT~~Ev~~ll~~~~~~~~~~~~---~~~~~~~lk~wYdGY~ 262 (284)
T PF09820_consen 224 GFTEEEVETLLKYYIENLAEEQD---REELLEELKEWYDGYH 262 (284)
T ss_pred CcCHHHHHHHHHHHHHHhhhccc---hHHHHHHHHHHcCCcc
Confidence 36788888888877322222222 33444556666 553
No 244
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=20.01 E-value=1.8e+02 Score=16.18 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=33.9
Q ss_pred CCCcccHHHHHHHHHhcC---------CCCCHHHHHHHHHhhCCCCCC-cccHHHHHHH
Q 036018 29 GDGRLSKKELQAAFRNSG---------LHFSGFRARRALHHADSNHDG-FIGNDEMKEL 77 (89)
Q Consensus 29 ~~g~i~~~e~~~~l~~~~---------~~~~~~~~~~~~~~~d~~~~g-~i~~~ef~~~ 77 (89)
|+..|+.+||...+..-. ...+.+.++.+.+.+...+.+ .++..|...+
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 456788999988887621 125677888888888776655 4888876554
Done!