BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036022
(271 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4H3O|A Chain A, Crystal Structure Of A New Form Of Lectin From Allium
Sativum At 2.17 A Resolution
pdb|4H3O|B Chain B, Crystal Structure Of A New Form Of Lectin From Allium
Sativum At 2.17 A Resolution
Length = 105
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 79 TIVWVANREQPVSDRFSSVLNISDGNLVLFNESQLPIWSTNLTATSRRSVDAVLLDEGNL 138
T W +N E S+VL SDGN V+++ S +W+++ T S + +L D+GN+
Sbjct: 38 TSTWASNTEIGGKSGCSAVLQ-SDGNFVVYDSSGRSLWASHSTRGSGNYI-LILQDDGNV 95
Query: 139 VL 140
++
Sbjct: 96 II 97
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 102 DGNLVLFNESQLPIWSTNLTATSRRSVDAVLLDEGNLVLRDLSNNLSEPLWQS 154
D NLVL++ S W++N + AVL +GN V+ D S LW S
Sbjct: 28 DCNLVLYDHST-STWASNTEIGGKSGCSAVLQSDGNFVVYDSS---GRSLWAS 76
>pdb|1KJ1|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 102 DGNLVLFNESQLPIWSTNLTATSRRSVDAVLLDEGNLVLRDLSNNLSEPLWQS 154
D NLVL++ S +W+TN ++ AVL +GN V+ D LW S
Sbjct: 28 DCNLVLYDHST-AVWTTNTDIPGKKGCKAVLQSDGNFVVYDAE---GRSLWAS 76
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 79 TIVWVANREQPVSDRFSSVLNISDGNLVLFNESQLPIWSTNLTATSRRSVDAVLLDEGNL 138
T VW N + P +VL SDGN V+++ +W+++ + V VL ++GN+
Sbjct: 38 TAVWTTNTDIPGKKGCKAVLQ-SDGNFVVYDAEGRSLWASHSVRGNGNYV-LVLQEDGNV 95
Query: 139 VL 140
V+
Sbjct: 96 VI 97
>pdb|1BWU|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 102 DGNLVLFNESQLPIWSTNLTATSRRSVDAVLLDEGNLVLRDLSNNLSEPLWQS 154
D NLVL++ S +WS+N ++ AVL +GN V+ D LW S
Sbjct: 28 DCNLVLYDHST-AVWSSNTDIPGKKGCKAVLQSDGNFVVYDAE---GASLWAS 76
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 79 TIVWVANREQPVSDRFSSVLNISDGNLVLFNESQLPIWSTNLTATSRRSVDAVLLDEGNL 138
T VW +N + P +VL SDGN V+++ +W+++ + V VL ++GN+
Sbjct: 38 TAVWSSNTDIPGKKGCKAVLQ-SDGNFVVYDAEGASLWASHSVRGNGNYV-LVLQEDGNV 95
Query: 139 VL 140
V+
Sbjct: 96 VI 97
>pdb|1BWU|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 102 DGNLVLFNESQLPIWSTNLTATSRRSVDAVLLDEGNLVLRDLSNNLSEPLWQS 154
D NLVL++ S +WS+N ++ AVL +GN V+ D LW S
Sbjct: 28 DCNLVLYDHST-AVWSSNTDIPGKKGCKAVLQSDGNFVVYDAE---GASLWAS 76
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 79 TIVWVANREQPVSDRFSSVLNISDGNLVLFNESQLPIWSTNLTATSRRSVDAVLLDEGNL 138
T VW +N + P +VL SDGN V+++ +W+++ + V VL ++GN+
Sbjct: 38 TAVWSSNTDIPGKKGCKAVLQ-SDGNFVVYDAEGASLWASHSVRGNGNYV-LVLQEDGNV 95
Query: 139 VL 140
V+
Sbjct: 96 VI 97
>pdb|1KJ1|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 102 DGNLVLFNESQLPIWSTNLTATSRRSVDAVLLDEGNLVLRDLSNNLSEPLWQS 154
D NLVL++ S +W++N ++ AVL +GN V+ D LW S
Sbjct: 28 DCNLVLYDHST-SVWASNTGILGKKGCKAVLQSDGNFVVYDAE---GRSLWAS 76
>pdb|1BWU|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 106
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 102 DGNLVLFNESQLPIWSTNLTATSRRSVDAVLLDEGNLVLRDLSNNLSEPLWQS 154
D NLVL++ S +W++N ++ AVL +GN V+ D LW S
Sbjct: 28 DCNLVLYDHST-SVWASNTGILGKKGCKAVLQADGNFVVYDAE---GRSLWAS 76
>pdb|1BWU|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 106
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 102 DGNLVLFNESQLPIWSTNLTATSRRSVDAVLLDEGNLVLRDLSNNLSEPLWQS 154
D NLVL++ S +W++N ++ AVL +GN V+ D LW S
Sbjct: 28 DCNLVLYDHST-SVWASNTGILGKKGCRAVLQSDGNFVVYDAE---GRSLWAS 76
>pdb|1MSA|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|B Chain B, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|D Chain D, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1NIV|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1NIV|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1JPC|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With
Mannose-Alpha1,6-(Mannose-Alpha1,3)-Mannose-
Alpha1,6-(Mannose-Alpha1,3)-Mannose
Length = 109
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 101 SDGNLVLFNESQLPIWSTNLTATSRRSVDAVLLDEGNLVL 140
+DGNLV++N S PIW++N + V +L + N+V+
Sbjct: 58 TDGNLVVYNPSNKPIWASNTGGQNGNYV-CILQKDRNVVI 96
>pdb|2PGC|A Chain A, Crystal Structure Of A A Marine Metagenome Protein
(Jcvi_pep_1096685590403) From Uncultured Marine Organism
At 2.53 A Resolution
pdb|2PGC|B Chain B, Crystal Structure Of A A Marine Metagenome Protein
(Jcvi_pep_1096685590403) From Uncultured Marine Organism
At 2.53 A Resolution
pdb|2PGC|C Chain C, Crystal Structure Of A A Marine Metagenome Protein
(Jcvi_pep_1096685590403) From Uncultured Marine Organism
At 2.53 A Resolution
pdb|2PGC|D Chain D, Crystal Structure Of A A Marine Metagenome Protein
(Jcvi_pep_1096685590403) From Uncultured Marine Organism
At 2.53 A Resolution
pdb|2PGC|E Chain E, Crystal Structure Of A A Marine Metagenome Protein
(Jcvi_pep_1096685590403) From Uncultured Marine Organism
At 2.53 A Resolution
Length = 207
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 93 RFSSVLNISDGNLVLFNE--SQLPIWSTNLTATSRRSVDAVLLDEG--NLVLRDLSNNLS 148
RF S+ ++F + L + L S+ SV + D G N+ LR++S +L
Sbjct: 44 RFGSIGTGDHAGSLIFIQFYDDLTGYQKALEIQSKSSVFKEIXDSGKANIYLRNISTSLP 103
Query: 149 EPLWQSFDHPAH 160
QS++HP +
Sbjct: 104 TKFEQSYEHPKY 115
>pdb|1NPL|A Chain A, Mannose-Specific Agglutinin (Lectin) From Daffodil
(Narcissus Pseudonarcissus) Bulbs In Complex With
Mannose-Alpha1,3-Mannose
pdb|3DZW|A Chain A, Structure Of Narcissus Pseudonarcissus Lectin Complex With
Mannobiose At 1.7 A Resolution, Form Ii
pdb|3DZW|B Chain B, Structure Of Narcissus Pseudonarcissus Lectin Complex With
Mannobiose At 1.7 A Resolution, Form Ii
Length = 109
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 92 DRFSSVLNISDGNLVLFNESQLPIWSTNLTATSRRSVDAVLLDEGNLVL 140
DR + SDGNLV+++ PIW++N + V VL + N+V+
Sbjct: 49 DRRCHLSMQSDGNLVVYSPRNNPIWASNTGGENGNYV-CVLQKDRNVVI 96
>pdb|4GAO|A Chain A, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|B Chain B, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|D Chain D, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|G Chain G, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
Length = 200
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 113 LPIWSTNLTATSRRSVDA----VLLDEGNLVLRDLSNNLSEPLW 152
L +W+T L +RS+ +LLD GN++ D+SN E W
Sbjct: 134 LDLWNTFLMEHHKRSIPRDTWNLLLDFGNMIADDMSNYDEEGAW 177
>pdb|1YTL|A Chain A, Crystal Structure Of Acetyl-Coa DecarboxylaseSYNTHASE
COMPLEX EPSILON Subunit 2
pdb|1YTL|B Chain B, Crystal Structure Of Acetyl-Coa DecarboxylaseSYNTHASE
COMPLEX EPSILON Subunit 2
pdb|1YTL|C Chain C, Crystal Structure Of Acetyl-Coa DecarboxylaseSYNTHASE
COMPLEX EPSILON Subunit 2
pdb|1YTL|D Chain D, Crystal Structure Of Acetyl-Coa DecarboxylaseSYNTHASE
COMPLEX EPSILON Subunit 2
Length = 174
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 108 FNESQLPIWSTNLTATSRRSVDAVLLDEGN-LVLRDLSNNLSEPLWQSFDHPAHTWIPGM 166
F E + + +T T R +DA L ++ N VL +L+ L +P W+ FD + + M
Sbjct: 57 FVEKDITVVATGSAIT--RFIDAGLGEKVNYAVLHELTQFLLDPDWKGFDGQGNYDLVLM 114
Query: 167 KLTFNKRNNVSQLLTSWKNKENPAPGLFSLEL----APDGSNQYVILWNRSEQYWR 218
+ SQ+L + KN AP + +L + P+ + LW + E Y +
Sbjct: 115 LGSIYYHG--SQMLAAIKNF---APHIRALAIDRYYHPNADMSFGNLWKKEEDYLK 165
>pdb|2XYD|A Chain A, Human Angiotenisn Converting Enzyme N-Domain In Complex
With Phosphinic Tripeptide
pdb|2XYD|B Chain B, Human Angiotenisn Converting Enzyme N-Domain In Complex
With Phosphinic Tripeptide
Length = 610
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 118 TNLTAT-SRRSVDAVLL-DEGNLVLRDLSNNLSEPLWQSFDHPAHTWIPGMKLTFNKRN 174
TN+TA +RR +A LL E + L EP+WQ F P I G T N
Sbjct: 44 TNITAENARRQEEAALLSQEFAEAWGQKAKELYEPIWQQFTDPQLRRIIGAVRTLGSAN 102
>pdb|3NXQ|A Chain A, Angiotensin Converting Enzyme N Domain Glycsoylation
Mutant (Ndom389) In Complex With Rxp407
pdb|3NXQ|B Chain B, Angiotensin Converting Enzyme N Domain Glycsoylation
Mutant (Ndom389) In Complex With Rxp407
Length = 629
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 118 TNLTAT-SRRSVDAVLL-DEGNLVLRDLSNNLSEPLWQSFDHPAHTWIPGMKLTFNKRN 174
TN+TA +RR +A LL E + L EP+WQ F P I G T N
Sbjct: 44 TNITAENARRQEEAALLSQEFAEAWGQKAKELYEPIWQQFTDPQLRRIIGAVRTLGSAN 102
>pdb|2C6N|A Chain A, Structure Of Human Somatic Angiontensin-I Converting
Enzyme N Domain With Lisinopril
pdb|2C6N|B Chain B, Structure Of Human Somatic Angiontensin-I Converting
Enzyme N Domain With Lisinopril
pdb|2C6F|A Chain A, Structure Of Human Somatic Angiontensin-I Converting
Enzyme N Domain
pdb|2C6F|B Chain B, Structure Of Human Somatic Angiontensin-I Converting
Enzyme N Domain
Length = 612
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 118 TNLTAT-SRRSVDAVLL-DEGNLVLRDLSNNLSEPLWQSFDHPAHTWIPGMKLTFNKRN 174
TN+TA +RR +A LL E + L EP+WQ+F P I G T N
Sbjct: 44 TNITAENARRQEEAALLSQEFAEAWGQKAKELYEPIWQNFTDPQLRRIIGAVRTLGSAN 102
>pdb|3REV|B Chain B, Crystal Structure Of Human Alloreactive Tcr Nb20
Length = 240
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 218 RSGTWDDNAKIFSLVPEMTLNYIYNFSYVSNENESYF 254
RS T D ++ S P T Y SYVS NE +F
Sbjct: 66 RSTTEDFPLRLLSAAPSQTSVYFCASSYVSQNNEQFF 102
>pdb|1Y8B|A Chain A, Solution Nmr-Derived Global Fold Of Malate Synthase G From
E.Coli
Length = 731
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 152 WQSFDHPAHTWIPGMKLTFNKRNNVSQLLTSWKNKENPAP 191
W++FD H P + +R+ + L W ++ NP P
Sbjct: 36 WRNFDEIVHDLAPENRQLLAERDRIQAALDEW-HRSNPGP 74
>pdb|1D8C|A Chain A, Malate Synthase G Complexed With Magnesium And Glyoxylate
Length = 723
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 152 WQSFDHPAHTWIPGMKLTFNKRNNVSQLLTSWKNKENPAP 191
W++FD H P + +R+ + L W ++ NP P
Sbjct: 36 WRNFDEIVHDLAPENRQLLAERDRIQAALDEW-HRSNPGP 74
>pdb|1P7T|A Chain A, Structure Of Escherichia Coli Malate Synthase
G:pyruvate:acetyl- Coenzyme A Abortive Ternary Complex
At 1.95 Angstrom Resolution
Length = 731
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 152 WQSFDHPAHTWIPGMKLTFNKRNNVSQLLTSWKNKENPAP 191
W++FD H P + +R+ + L W ++ NP P
Sbjct: 36 WRNFDEIVHDLAPENRQLLAERDRIQAALDEW-HRSNPGP 74
>pdb|1P7T|B Chain B, Structure Of Escherichia Coli Malate Synthase
G:pyruvate:acetyl- Coenzyme A Abortive Ternary Complex
At 1.95 Angstrom Resolution
Length = 731
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 152 WQSFDHPAHTWIPGMKLTFNKRNNVSQLLTSWKNKENPAP 191
W++FD H P + +R+ + L W ++ NP P
Sbjct: 36 WRNFDEIVHDLAPENRQLLAERDRIQAALDEW-HRSNPGP 74
>pdb|2JQX|A Chain A, Solution Structure Of Malate Synthase G From Joint
Refinement Against Nmr And Saxs Data
Length = 723
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 152 WQSFDHPAHTWIPGMKLTFNKRNNVSQLLTSWKNKENPAP 191
W++FD H P + +R+ + L W ++ NP P
Sbjct: 36 WRNFDEIVHDLAPENRQLLAERDRIQAALDEW-HRSNPGP 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,220,207
Number of Sequences: 62578
Number of extensions: 326005
Number of successful extensions: 800
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 784
Number of HSP's gapped (non-prelim): 46
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)