Your job contains 1 sequence.
>036026
MSKSVEGVLAEKYPAYKDRHKLALEREKQIKEKAEKARAYRFRDNSNFDSKHPTLPPKLA
LLKEKPIVSGDSSDQSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKPSGGAPAGTNAN
PSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGDKVQRAPELVEFYQT
LMKREAKKDTSSLISSTSNTSDARSNMIGEIENKSSFLLAVKADVETQGDFVQSLAAEVR
AASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLVKLEKQ
VSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMAISRYREFGIPVDWLLDTGVV
GKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFLLLQGVRFAFRVHQFAGGFDAESM
KAFEVLRSRVHKQTVEDNKQEA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 036026
(442 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2102385 - symbol:CHUP1 "CHLOROPLAST UNUSUAL PO... 1131 3.7e-133 2
TAIR|locus:2831359 - symbol:AT4G18570 species:3702 "Arabi... 766 5.0e-76 1
TAIR|locus:2007755 - symbol:AT1G48280 "AT1G48280" species... 656 2.3e-64 1
TAIR|locus:2007477 - symbol:AT1G07120 "AT1G07120" species... 580 2.5e-56 1
>TAIR|locus:2102385 [details] [associations]
symbol:CHUP1 "CHLOROPLAST UNUSUAL POSITIONING 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009707
"chloroplast outer membrane" evidence=IDA] [GO:0009902 "chloroplast
relocation" evidence=RCA;IMP] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0010027 "thylakoid membrane organization"
evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
[GO:0019684 "photosynthesis, light reaction" evidence=RCA]
[GO:0034660 "ncRNA metabolic process" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0042793
"transcription from plastid promoter" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AP001313 GO:GO:0009707
EMBL:AB087408 IPI:IPI00541711 RefSeq:NP_001189974.1
RefSeq:NP_189197.2 UniGene:At.27741 ProteinModelPortal:Q9LI74
STRING:Q9LI74 PaxDb:Q9LI74 PRIDE:Q9LI74 EnsemblPlants:AT3G25690.1
EnsemblPlants:AT3G25690.2 GeneID:822157 KEGG:ath:AT3G25690
TAIR:At3g25690 eggNOG:NOG310144 HOGENOM:HOG000242560
InParanoid:Q9LI74 OMA:ELRNYQT PhylomeDB:Q9LI74
ProtClustDB:CLSN2680868 Genevestigator:Q9LI74 GO:GO:0009902
Uniprot:Q9LI74
Length = 1004
Score = 1131 (403.2 bits), Expect = 3.7e-133, Sum P(2) = 3.7e-133
Identities = 224/284 (78%), Positives = 250/284 (88%)
Query: 157 SLPRGVGSGDKVQRAPELVEFYQTLMKREAKKDXXXXXXXXXXXXD--ARSNMIGEIENK 214
+L RG G G+KV RAPELVEFYQ+LMKRE+KK+ AR+NMIGEIEN+
Sbjct: 707 ALGRGAGGGNKVHRAPELVEFYQSLMKRESKKEGAPSLISSGTGNSSAARNNMIGEIENR 766
Query: 215 SSFLLAVKADVETQGDFVQSLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHF 274
S+FLLAVKADVETQGDFVQSLA EVRA+SFT +EDL+ FV+WLDEELSFLVDERAVLKHF
Sbjct: 767 STFLLAVKADVETQGDFVQSLATEVRASSFTDIEDLLAFVSWLDEELSFLVDERAVLKHF 826
Query: 275 DWPEGKADALREAAFEYQDLVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALL 334
DWPEGKADALREAAFEYQDL+KLEKQV+SFVDDP L CE ALKKMYKLLEKVEQSVYALL
Sbjct: 827 DWPEGKADALREAAFEYQDLMKLEKQVTSFVDDPNLSCEPALKKMYKLLEKVEQSVYALL 886
Query: 335 RTRDMAISRYREFGIPVDWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNR 394
RTRDMAISRY+EFGIPVDWL DTGVVGKIKLSSVQLA+KYMKRV+ EL+++S +K+PNR
Sbjct: 887 RTRDMAISRYKEFGIPVDWLSDTGVVGKIKLSSVQLAKKYMKRVAYELDSVSGSDKDPNR 946
Query: 395 EFLLLQGVRFAFRVHQFAGGFDAESMKAFEVLRSRVHKQTVEDN 438
EFLLLQGVRFAFRVHQFAGGFDAESMKAFE LRSR ++ ++N
Sbjct: 947 EFLLLQGVRFAFRVHQFAGGFDAESMKAFEELRSRAKTESGDNN 990
Score = 195 (73.7 bits), Expect = 3.7e-133, Sum P(2) = 3.7e-133
Identities = 46/100 (46%), Positives = 60/100 (60%)
Query: 1 MSKSVEGVLAEKYPAYKDRHKLALEREKQIKEKAEKARAYRFRDNSNFDSXXXXXXXXXX 60
MSKSV+ VL EKYPAYKDRHKLA+EREK IK KA++ARA RF N
Sbjct: 546 MSKSVDNVLDEKYPAYKDRHKLAVEREKHIKHKADQARAERFGGNVALPPKLAQLKEKRV 605
Query: 61 XXXXXXIVSGDSSDQSHDD---RAAESQ-TISKMKFSQIE 96
+GD S++S++ +A+E+ T++KMK IE
Sbjct: 606 VVPSVITATGDQSNESNESNEGKASENAATVTKMKLVDIE 645
>TAIR|locus:2831359 [details] [associations]
symbol:AT4G18570 species:3702 "Arabidopsis thaliana"
[GO:0009507 "chloroplast" evidence=ISM] EMBL:CP002687 EMBL:AY128285
EMBL:BT004523 IPI:IPI00524553 RefSeq:NP_193591.2 UniGene:At.23905
UniGene:At.70231 ProteinModelPortal:Q8L7S5 PRIDE:Q8L7S5
EnsemblPlants:AT4G18570.1 GeneID:827588 KEGG:ath:AT4G18570
TAIR:At4g18570 HOGENOM:HOG000070980 InParanoid:Q8L7S5 OMA:FEWPEQK
PhylomeDB:Q8L7S5 ProtClustDB:CLSN2918131 Genevestigator:Q8L7S5
Uniprot:Q8L7S5
Length = 642
Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
Identities = 159/280 (56%), Positives = 200/280 (71%)
Query: 167 KVQRAPELVEFYQTLMKREA---KKDXXXXXXXXXXXXDARSN---MIGEIENKSSFLLA 220
KV+R PE+VEFY +LM+R++ ++D A SN MIGEIEN+S +LLA
Sbjct: 352 KVRRVPEVVEFYHSLMRRDSTNSRRDSTGGGNAAAEAILANSNARDMIGEIENRSVYLLA 411
Query: 221 VKADVETQGDFVQSLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGK 280
+K DVETQGDF++ L EV A+F+ +ED+V FV WLD+ELS+LVDERAVLKHF+WPE K
Sbjct: 412 IKTDVETQGDFIRFLIKEVGNAAFSDIEDVVPFVKWLDDELSYLVDERAVLKHFEWPEQK 471
Query: 281 ADALREAAFEYQDLVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMA 340
ADALREAAF Y DL KL + S F +DP SALKKM L EK+E VY+L R R+ A
Sbjct: 472 ADALREAAFCYFDLKKLISEASRFREDPRQSSSSALKKMQALFEKLEHGVYSLSRMRESA 531
Query: 341 ISRYREFGIPVDWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFLLLQ 400
++++ F IPVDW+L+TG+ +IKL+SV+LA KYMKRVS ELEA+ P E L++Q
Sbjct: 532 ATKFKSFQIPVDWMLETGITSQIKLASVKLAMKYMKRVSAELEAIEGGG--PEEEELIVQ 589
Query: 401 GVRFAFRVHQFAGGFDAESMKAFEVLRSRVHKQTVEDNKQ 440
GVRFAFRVHQFAGGFDAE+MKAFE LR + V+ Q
Sbjct: 590 GVRFAFRVHQFAGGFDAETMKAFEELRDKARSCHVQCQSQ 629
>TAIR|locus:2007755 [details] [associations]
symbol:AT1G48280 "AT1G48280" species:3702 "Arabidopsis
thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] EMBL:CP002684 EMBL:AC007932
IPI:IPI00530542 PIR:G96522 RefSeq:NP_564524.1 UniGene:At.26293
PRIDE:Q9SX62 EnsemblPlants:AT1G48280.1 GeneID:841248
KEGG:ath:AT1G48280 TAIR:At1g48280 HOGENOM:HOG000153560
InParanoid:Q9SX62 OMA:GEIQNRS PhylomeDB:Q9SX62
ProtClustDB:CLSN2721717 Genevestigator:Q9SX62 Uniprot:Q9SX62
Length = 558
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 124/273 (45%), Positives = 191/273 (69%)
Query: 159 PRGVGSGDKVQRAPELVEFYQTLMKREAKKDXXXXXXXXXXXXD-ARSNMIGEIENKSSF 217
PR + + Q++P + + +Q L K++ ++ + A ++++GEI+N+S+
Sbjct: 270 PRPLAKAARAQKSPPVSQLFQLLNKQDNSRNLSQSVNGNKSQVNSAHNSIVGEIQNRSAH 329
Query: 218 LLAVKADVETQGDFVQSLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWP 277
L+A+KAD+ET+G+F+ L +V F+ +ED++ FV+WLD+EL+ L DERAVLKHF WP
Sbjct: 330 LIAIKADIETKGEFINDLIQKVLTTCFSDMEDVMKFVDWLDKELATLADERAVLKHFKWP 389
Query: 278 EGKADALREAAFEYQDLVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTR 337
E KAD L+EAA EY++L KLEK++SS+ DDP + ALKKM LL+K EQ + L+R R
Sbjct: 390 EKKADTLQEAAVEYRELKKLEKELSSYSDDPNIHYGVALKKMANLLDKSEQRIRRLVRLR 449
Query: 338 DMAISRYREFGIPVDWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFL 397
++ Y++F IPV+W+LD+G++ KIK +S++LA+ YM RV+ EL++ ++E +E L
Sbjct: 450 GSSMRSYQDFKIPVEWMLDSGMICKIKRASIKLAKTYMNRVANELQSARNLDRESTKEAL 509
Query: 398 LLQGVRFAFRVHQFAGGFDAESMKAFEVLRSRV 430
LLQGVRFA+R HQFAGG D E++ A E ++ RV
Sbjct: 510 LLQGVRFAYRTHQFAGGLDPETLCALEEIKQRV 542
>TAIR|locus:2007477 [details] [associations]
symbol:AT1G07120 "AT1G07120" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0009941 "chloroplast envelope" evidence=IDA]
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009941 EMBL:AC067971
IPI:IPI00537623 PIR:A86206 RefSeq:NP_172192.1 UniGene:At.28020
EnsemblPlants:AT1G07120.1 GeneID:837222 KEGG:ath:AT1G07120
TAIR:At1g07120 eggNOG:NOG239801 HOGENOM:HOG000070965
InParanoid:Q9LMK4 OMA:MREGDAC PhylomeDB:Q9LMK4
ProtClustDB:CLSN2682542 Genevestigator:Q9LMK4 Uniprot:Q9LMK4
Length = 392
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 121/261 (46%), Positives = 173/261 (66%)
Query: 168 VQRAPELVEFYQTLMKREAKKDXXXXXXXXXXXXDARSNMIGEIENKSSFLLAVKADVET 227
V+RAPE+VEFY+ L KRE+ R NMIGEIEN+S +L +K+D +
Sbjct: 128 VRRAPEVVEFYRALTKRESHMGNKINQNGVLSPAFNR-NMIGEIENRSKYLSDIKSDTDR 186
Query: 228 QGDFVQSLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFD-WPEGKADALRE 286
D + L ++V AA+FT + ++ FV W+DEELS LVDERAVLKHF WPE K D+LRE
Sbjct: 187 HRDHIHILISKVEAATFTDISEVETFVKWIDEELSSLVDERAVLKHFPKWPERKVDSLRE 246
Query: 287 AAFEYQDLVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMAISRYRE 346
AA Y+ L ++ SF D+P AL+++ L +++E+SV + RD RY++
Sbjct: 247 AACNYKRPKNLGNEILSFKDNPKDSLTQALQRIQSLQDRLEESVNNTEKMRDSTGKRYKD 306
Query: 347 FGIPVDWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFLLLQGVRFAF 406
F IP +W+LDTG++G++K SS++LA++YMKR++ ELE+ + KE N L+LQGVRFA+
Sbjct: 307 FQIPWEWMLDTGLIGQLKYSSLRLAQEYMKRIAKELES-NGSGKEGN---LMLQGVRFAY 362
Query: 407 RVHQFAGGFDAESMKAFEVLR 427
+HQFAGGFD E++ F L+
Sbjct: 363 TIHQFAGGFDGETLSIFHELK 383
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.130 0.356 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 442 358 0.00081 117 3 11 22 0.42 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 4
No. of states in DFA: 595 (63 KB)
Total size of DFA: 200 KB (2113 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.98u 0.08s 28.06t Elapsed: 00:00:01
Total cpu time: 27.98u 0.08s 28.06t Elapsed: 00:00:01
Start: Mon May 20 21:49:21 2013 End: Mon May 20 21:49:22 2013