BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036026
         (442 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1
           SV=1
          Length = 1004

 Score =  538 bits (1385), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 325/450 (72%), Positives = 370/450 (82%), Gaps = 25/450 (5%)

Query: 1   MSKSVEGVLAEKYPAYKDRHKLALEREKQIKEKAEKARAYRFRDNSNFDSKHPTLPPKLA 60
           MSKSV+ VL EKYPAYKDRHKLA+EREK IK KA++ARA RF  N         LPPKLA
Sbjct: 546 MSKSVDNVLDEKYPAYKDRHKLAVEREKHIKHKADQARAERFGGN-------VALPPKLA 598

Query: 61  LLKEKPIV-------SGDSSDQSHDD---RAAESQ-TISKMKFSQIEKRPPRVFRPPPKP 109
            LKEK +V       +GD S++S++    +A+E+  T++KMK   IEKRPPRV RPPP+ 
Sbjct: 599 QLKEKRVVVPSVITATGDQSNESNESNEGKASENAATVTKMKLVDIEKRPPRVPRPPPRS 658

Query: 110 SGGAPAGTNANPSS---GTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGD 166
           +GG  + TN  PS+        PPPPP      PPPPP GGPPPPPPPPG+L RG G G+
Sbjct: 659 AGGGKS-TNL-PSARPPLPGGGPPPPPPPPGGGPPPPPGGGPPPPPPPPGALGRGAGGGN 716

Query: 167 KVQRAPELVEFYQTLMKREAKKDTS-SLISS-TSNTSDARSNMIGEIENKSSFLLAVKAD 224
           KV RAPELVEFYQ+LMKRE+KK+ + SLISS T N+S AR+NMIGEIEN+S+FLLAVKAD
Sbjct: 717 KVHRAPELVEFYQSLMKRESKKEGAPSLISSGTGNSSAARNNMIGEIENRSTFLLAVKAD 776

Query: 225 VETQGDFVQSLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADAL 284
           VETQGDFVQSLA EVRA+SFT +EDL+ FV+WLDEELSFLVDERAVLKHFDWPEGKADAL
Sbjct: 777 VETQGDFVQSLATEVRASSFTDIEDLLAFVSWLDEELSFLVDERAVLKHFDWPEGKADAL 836

Query: 285 REAAFEYQDLVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMAISRY 344
           REAAFEYQDL+KLEKQV+SFVDDP L CE ALKKMYKLLEKVEQSVYALLRTRDMAISRY
Sbjct: 837 REAAFEYQDLMKLEKQVTSFVDDPNLSCEPALKKMYKLLEKVEQSVYALLRTRDMAISRY 896

Query: 345 REFGIPVDWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFLLLQGVRF 404
           +EFGIPVDWL DTGVVGKIKLSSVQLA+KYMKRV+ EL+++S  +K+PNREFLLLQGVRF
Sbjct: 897 KEFGIPVDWLSDTGVVGKIKLSSVQLAKKYMKRVAYELDSVSGSDKDPNREFLLLQGVRF 956

Query: 405 AFRVHQFAGGFDAESMKAFEVLRSRVHKQT 434
           AFRVHQFAGGFDAESMKAFE LRSR   ++
Sbjct: 957 AFRVHQFAGGFDAESMKAFEELRSRAKTES 986


>sp|Q9VUC6|Y2138_DROME Formin-like protein CG32138 OS=Drosophila melanogaster GN=CG32138
           PE=1 SV=3
          Length = 1183

 Score = 38.9 bits (89), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 111 GGAPAGTNANPSSGTPPAPP-PPPGATPPPPPPPPPGGPPPPPPPPGSLPRGV 162
           G +P G+ +   + T P+PP  PP  +   PPPPP  G  P P    ++ R V
Sbjct: 639 GFSPLGSPSGSLASTAPSPPHAPPMLSSFQPPPPPVAGFMPAPDGAMTIKRKV 691


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.131    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 184,264,139
Number of Sequences: 539616
Number of extensions: 10162810
Number of successful extensions: 280517
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3111
Number of HSP's successfully gapped in prelim test: 1951
Number of HSP's that attempted gapping in prelim test: 85890
Number of HSP's gapped (non-prelim): 70730
length of query: 442
length of database: 191,569,459
effective HSP length: 121
effective length of query: 321
effective length of database: 126,275,923
effective search space: 40534571283
effective search space used: 40534571283
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)