Query 036026
Match_columns 442
No_of_seqs 373 out of 646
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 08:40:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036026.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036026hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1924 RhoA GTPase effector D 99.9 3.9E-23 8.5E-28 220.5 13.8 38 10-47 440-477 (1102)
2 KOG1924 RhoA GTPase effector D 99.2 1.2E-10 2.7E-15 125.8 12.5 62 268-330 736-801 (1102)
3 KOG1830 Wiskott Aldrich syndro 98.7 3.4E-08 7.4E-13 101.3 7.9 62 195-258 447-518 (518)
4 KOG3671 Actin regulatory prote 98.0 1.6E-05 3.4E-10 83.7 9.0 38 51-89 261-298 (569)
5 KOG1923 Rac1 GTPase effector F 96.9 0.082 1.8E-06 58.9 19.4 13 315-327 516-528 (830)
6 KOG1925 Rac1 GTPase effector F 96.1 0.023 5E-07 60.5 8.5 32 192-223 308-339 (817)
7 KOG3671 Actin regulatory prote 95.7 0.036 7.9E-07 59.0 8.0 23 200-223 491-513 (569)
8 KOG1923 Rac1 GTPase effector F 95.3 0.27 5.9E-06 55.0 13.3 7 398-404 685-691 (830)
9 PHA03247 large tegument protei 94.5 0.12 2.6E-06 64.0 8.6 30 318-347 3110-3139(3151)
10 PRK15319 AIDA autotransporter- 92.9 0.16 3.4E-06 61.6 5.9 10 177-186 1745-1754(2039)
11 KOG3997 Major apurinic/apyrimi 91.7 2.3 5.1E-05 41.5 11.2 93 342-434 97-207 (281)
12 PHA01732 proline-rich protein 90.4 1.1 2.3E-05 37.5 6.5 12 171-182 44-55 (94)
13 KOG1922 Rho GTPase effector BN 89.6 4.3 9.4E-05 46.6 13.1 17 168-184 390-406 (833)
14 KOG4672 Uncharacterized conser 89.3 1.5 3.3E-05 46.1 8.1 6 252-257 478-483 (487)
15 KOG4849 mRNA cleavage factor I 84.5 6.4 0.00014 40.9 9.4 7 178-184 362-368 (498)
16 KOG1830 Wiskott Aldrich syndro 83.8 3.5 7.6E-05 43.7 7.4 20 22-41 158-177 (518)
17 KOG0132 RNA polymerase II C-te 83.1 6 0.00013 44.8 9.2 11 52-62 534-544 (894)
18 KOG2391 Vacuolar sorting prote 82.8 8.1 0.00018 39.9 9.3 20 255-274 221-240 (365)
19 PRK15313 autotransport protein 79.0 4.6 0.0001 46.8 6.8 8 179-186 655-662 (955)
20 PF05518 Totivirus_coat: Totiv 75.1 7 0.00015 44.2 6.7 23 25-47 606-629 (759)
21 KOG2675 Adenylate cyclase-asso 75.0 5.2 0.00011 42.6 5.4 9 344-352 454-462 (480)
22 COG5178 PRP8 U5 snRNP spliceos 74.3 2.5 5.4E-05 49.6 3.0 7 409-415 602-608 (2365)
23 KOG4590 Signal transduction pr 71.5 11 0.00024 40.0 6.9 7 22-28 76-82 (409)
24 KOG4849 mRNA cleavage factor I 63.3 16 0.00035 38.0 5.9 11 10-20 68-78 (498)
25 KOG1925 Rac1 GTPase effector F 61.4 15 0.00032 40.0 5.4 79 269-347 522-613 (817)
26 PRK14950 DNA polymerase III su 59.1 52 0.0011 36.5 9.5 10 174-183 467-476 (585)
27 PRK12270 kgd alpha-ketoglutara 53.1 1E+02 0.0022 36.8 10.5 29 27-66 8-36 (1228)
28 KOG3895 Synaptic vesicle prote 50.2 89 0.0019 32.9 8.7 15 87-101 382-396 (488)
29 KOG2675 Adenylate cyclase-asso 49.9 21 0.00047 38.1 4.3 15 290-304 453-467 (480)
30 PF10191 COG7: Golgi complex c 49.2 2.6E+02 0.0057 32.2 13.3 105 323-431 389-495 (766)
31 PF05308 Mito_fiss_reg: Mitoch 43.5 43 0.00093 33.4 5.2 8 33-40 56-63 (253)
32 KOG2196 Nuclear porin [Nuclear 37.2 84 0.0018 31.3 6.0 56 292-347 192-252 (254)
33 KOG2236 Uncharacterized conser 36.5 2.6E+02 0.0056 30.4 9.8 15 24-38 319-333 (483)
34 CHL00172 cpeB phycoerythrin be 36.2 53 0.0011 31.1 4.3 25 343-369 116-140 (177)
35 PF03276 Gag_spuma: Spumavirus 35.9 1E+02 0.0022 34.0 6.9 28 344-375 373-402 (582)
36 COG4749 Uncharacterized protei 34.4 86 0.0019 29.5 5.2 30 396-428 88-124 (196)
37 KOG0559 Dihydrolipoamide succi 34.4 1.5E+02 0.0033 31.3 7.5 9 266-274 310-318 (457)
38 PF10083 DUF2321: Uncharacteri 32.7 90 0.0019 29.0 5.1 31 269-299 73-103 (158)
39 PRK14948 DNA polymerase III su 31.8 1.4E+02 0.0029 33.7 7.4 6 26-31 441-446 (620)
40 PF09278 MerR-DNA-bind: MerR, 30.9 1.7E+02 0.0037 22.0 5.7 33 308-340 30-62 (65)
41 TIGR01339 phycocy_beta phycocy 30.2 68 0.0015 30.2 4.0 26 344-371 115-140 (170)
42 PF03276 Gag_spuma: Spumavirus 30.1 1.5E+02 0.0032 32.8 6.9 16 310-325 389-404 (582)
43 PRK13729 conjugal transfer pil 28.2 39 0.00085 36.6 2.3 32 26-63 58-89 (475)
44 COG1084 Predicted GTPase [Gene 27.5 1.4E+02 0.0029 31.3 5.9 88 243-340 68-158 (346)
45 CHL00086 apcA allophycocyanin 27.0 93 0.002 28.9 4.2 25 344-370 116-140 (161)
46 PF08006 DUF1700: Protein of u 26.7 59 0.0013 30.1 3.0 58 229-286 4-62 (181)
47 KOG3758 Uncharacterized conser 26.0 1.8E+02 0.004 32.6 6.8 108 218-326 80-199 (655)
48 PF15605 Toxin_52: Putative to 25.9 2.1E+02 0.0045 24.8 5.8 48 281-328 46-99 (103)
49 PF12238 MSA-2c: Merozoite sur 25.7 1.8E+02 0.004 28.2 6.1 16 24-39 54-69 (205)
50 COG5185 HEC1 Protein involved 25.7 3.9E+02 0.0084 29.4 8.9 95 244-352 270-368 (622)
51 PF12238 MSA-2c: Merozoite sur 25.2 78 0.0017 30.7 3.5 64 224-291 21-89 (205)
52 smart00498 FH2 Formin Homology 24.9 1.9E+02 0.0041 30.8 6.7 94 245-339 94-192 (432)
53 TIGR01628 PABP-1234 polyadenyl 24.8 2.9E+02 0.0064 30.0 8.4 9 202-210 503-511 (562)
54 PF10046 BLOC1_2: Biogenesis o 24.6 4.3E+02 0.0092 22.3 8.3 30 316-345 68-97 (99)
55 PF02181 FH2: Formin Homology 24.5 1E+02 0.0022 31.6 4.6 175 166-343 3-194 (370)
56 COG1392 Phosphate transport re 24.3 6.6E+02 0.014 24.4 12.6 128 245-384 77-212 (217)
57 CHL00090 apcD allophycocyanin 24.3 83 0.0018 29.3 3.4 26 343-370 115-140 (161)
58 PF08287 DASH_Spc19: Spc19; I 23.6 3.1E+02 0.0068 25.2 7.0 23 314-336 68-90 (153)
59 PF06400 Alpha-2-MRAP_N: Alpha 23.1 1.7E+02 0.0036 26.1 4.8 59 362-420 54-119 (120)
60 CHL00173 cpeA phycoerythrin al 23.1 6.2E+02 0.014 23.6 10.6 13 343-355 116-128 (164)
61 PF05667 DUF812: Protein of un 22.7 2.2E+02 0.0048 32.0 6.8 74 247-336 493-569 (594)
62 KOG0994 Extracellular matrix g 22.6 5.7E+02 0.012 31.4 10.1 23 410-432 1341-1365(1758)
63 KOG1785 Tyrosine kinase negati 21.8 2.2E+02 0.0048 30.5 6.2 14 84-97 458-471 (563)
64 PF07462 MSP1_C: Merozoite sur 21.7 2.2E+02 0.0048 31.6 6.4 9 57-65 224-232 (574)
65 TIGR03582 EF_0829 PRD domain p 21.6 1.3E+02 0.0028 26.2 3.8 55 336-404 47-101 (107)
66 COG5052 YOP1 Protein involved 21.3 2E+02 0.0043 27.5 5.2 54 357-415 2-58 (186)
67 PF08990 Docking: Erythronolid 21.0 85 0.0019 20.7 2.0 14 372-385 8-21 (27)
68 PF08700 Vps51: Vps51/Vps67; 20.7 4.4E+02 0.0094 20.9 7.7 43 283-333 41-84 (87)
69 KOG0391 SNF2 family DNA-depend 20.4 3E+02 0.0065 33.8 7.4 8 13-20 1802-1809(1958)
70 PF00502 Phycobilisome: Phycob 20.3 6.6E+02 0.014 22.9 9.6 13 343-355 111-123 (157)
No 1
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=99.89 E-value=3.9e-23 Score=220.50 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=35.5
Q ss_pred cccCCCCccchhhhhhHHHHHHHHHHHHHHhhhccCCC
Q 036026 10 AEKYPAYKDRHKLALEREKQIKEKAEKARAYRFRDNSN 47 (442)
Q Consensus 10 ~~~~P~f~~r~~l~~d~~~~i~~~~~k~~~~~~~~~~~ 47 (442)
+|+||||+||+||+||++.+||.|+||++++++++++.
T Consensus 440 ~~~DPdf~yr~~l~id~~~liD~~vdkak~eeseqkA~ 477 (1102)
T KOG1924|consen 440 TGMDPDFKYRFRLDIDLTELIDKMVDKAKAEESEQKAA 477 (1102)
T ss_pred CCCCCCcchhhcccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999997653
No 2
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=99.19 E-value=1.2e-10 Score=125.85 Aligned_cols=62 Identities=21% Similarity=0.303 Sum_probs=41.8
Q ss_pred hhhhhccCCChhhHHHHHHHHhhhhHHHHHHHhhccccCCCCCc--hHHHHHHH--HHHHHHHHHHH
Q 036026 268 RAVLKHFDWPEGKADALREAAFEYQDLVKLEKQVSSFVDDPGLP--CESALKKM--YKLLEKVEQSV 330 (442)
Q Consensus 268 ~~vLK~F~~pe~kl~aLre~~~~Y~~L~~l~~~l~~~~~~~~~~--~~~~lkKm--~~ll~K~e~sv 330 (442)
+++++|++. .+.++.|++.+.+|.+|.+.|+++.......+|+ ++.+|=|| ...++-|.-+|
T Consensus 736 qnLik~lPe-~E~l~~L~e~Kaeye~l~e~EQF~vvm~~vkrL~pRL~~ilFKl~fse~vnniKP~i 801 (1102)
T KOG1924|consen 736 QNLIKHLPE-QEQLNKLSELKAEYEDLPEPEQFVVVMSQVKRLRPRLSAILFKLTFSEQVNNIKPDI 801 (1102)
T ss_pred HHHHHhCCC-HHHHHHHHHHHHhccCCCCHHHHhHHHhhccccChhHHHHHHHhhHHHHHhhcChHH
Confidence 378899984 4669999999999999999999866654333332 34444454 34455444433
No 3
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=98.70 E-value=3.4e-08 Score=101.28 Aligned_cols=62 Identities=27% Similarity=0.413 Sum_probs=50.2
Q ss_pred cCCCCChhhhhhhhhhhhccchhhhhhhhcccccc-------cccchhhHhhhhccccchHHHH-HH--HHhhh
Q 036026 195 SSTSNTSDARSNMIGEIENKSSFLLAVKADVETQG-------DFVQSLAAEVRAASFTTVEDLV-VF--VNWLD 258 (442)
Q Consensus 195 ss~~~~sd~rs~li~eIenrS~~Llaik~dve~q~-------dfI~~L~~eIraa~f~diedl~-~F--v~wld 258 (442)
..++..+|+|++|++.|+ .+..|.+|+++.++.+ |+++.|.++| +..|+|.||-. +| .+|+|
T Consensus 447 ~~lP~~sDaRsdLL~aIr-~GiqLrKVeeqreqeakr~~v~ndvatiLsRRi-aveysdseDdssefDe~dW~d 518 (518)
T KOG1830|consen 447 PVLPPISDARSDLLAAIR-SGIQLRKVEEQREQEAKREAVENDVATILSRRI-AVEYSDSEDDSSEFDEDDWSD 518 (518)
T ss_pred CCCCCCCchHHHHHHHHH-hcchhHHHHHHHHHHHhhccccchHHHHHHHHH-HHHhccCcccccccccccccC
Confidence 556788999999999998 7889999988776543 8899999988 88899988776 66 45653
No 4
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=98.05 E-value=1.6e-05 Score=83.66 Aligned_cols=38 Identities=16% Similarity=0.020 Sum_probs=31.5
Q ss_pred CCCCCchhhhhhhcCCCccCCCCCCCccchhhhhhhccc
Q 036026 51 KHPTLPPKLALLKEKPIVSGDSSDQSHDDRAAESQTISK 89 (442)
Q Consensus 51 ~~~~L~pkl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (442)
....+++.++.++.+++++..+..+.+++++ ++++|.+
T Consensus 261 ~p~~~dp~~nn~~s~agise~~l~~~~t~~f-i~~fi~k 298 (569)
T KOG3671|consen 261 APNNNDPPLNNLFSSAGISEAQLTERDTMKF-IYDFIQK 298 (569)
T ss_pred CCCCCChhhhcccccCCCCcccccchhhccc-cccchhc
Confidence 3478999999999999999999988887776 6666665
No 5
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=96.90 E-value=0.082 Score=58.93 Aligned_cols=13 Identities=38% Similarity=0.531 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHH
Q 036026 315 ALKKMYKLLEKVE 327 (442)
Q Consensus 315 ~lkKm~~ll~K~e 327 (442)
.+.||+++-+|++
T Consensus 516 ~lskIErle~kla 528 (830)
T KOG1923|consen 516 SLSKIERLEEKLA 528 (830)
T ss_pred hhhhhhhhHHHHH
Confidence 3456666666655
No 6
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=96.05 E-value=0.023 Score=60.55 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=20.9
Q ss_pred ccccCCCCChhhhhhhhhhhhccchhhhhhhh
Q 036026 192 SLISSTSNTSDARSNMIGEIENKSSFLLAVKA 223 (442)
Q Consensus 192 s~~ss~~~~sd~rs~li~eIenrS~~Llaik~ 223 (442)
+.|++.-.++.+...+.+.||.|..-...+|.
T Consensus 308 t~W~s~D~~~~D~~r~~~LFEsr~~~~~P~KK 339 (817)
T KOG1925|consen 308 TLWASLDPVSVDTARLEHLFESRAKEVLPSKK 339 (817)
T ss_pred hhhhccCcceecHHHHHHHHHHhhhhhccchh
Confidence 45666656666667788888877665444443
No 7
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=95.67 E-value=0.036 Score=58.99 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=18.6
Q ss_pred Chhhhhhhhhhhhccchhhhhhhh
Q 036026 200 TSDARSNMIGEIENKSSFLLAVKA 223 (442)
Q Consensus 200 ~sd~rs~li~eIenrS~~Llaik~ 223 (442)
..|+|.++++.|+ .+..|..++.
T Consensus 491 ~~dgR~~LmaqIR-qG~~Lk~v~~ 513 (569)
T KOG3671|consen 491 SGDGRDALMAQIR-QGGQLKKVDS 513 (569)
T ss_pred CcccHHHHHHHHH-hcccccccch
Confidence 6789999999999 6677776655
No 8
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=95.27 E-value=0.27 Score=54.99 Aligned_cols=7 Identities=14% Similarity=0.083 Sum_probs=3.0
Q ss_pred HHhhhhh
Q 036026 398 LLQGVRF 404 (442)
Q Consensus 398 l~~~~~f 404 (442)
||+.|+-
T Consensus 685 l~~~~k~ 691 (830)
T KOG1923|consen 685 LRKDFKD 691 (830)
T ss_pred HHHHHHH
Confidence 4444443
No 9
>PHA03247 large tegument protein UL36; Provisional
Probab=94.46 E-value=0.12 Score=64.05 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHhhhhhhc
Q 036026 318 KMYKLLEKVEQSVYALLRTRDMAISRYREF 347 (442)
Q Consensus 318 Km~~ll~K~e~sv~~l~Rtrd~~~~~~~~~ 347 (442)
-|.-|++-|++-++.|-+||.-++.|-...
T Consensus 3110 alAlLi~ACr~i~r~lr~TR~~L~~~~~~v 3139 (3151)
T PHA03247 3110 ALAVLIEACRRIRRQLRRTRHALLDRSGAV 3139 (3151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 456688888998999999999887776543
No 10
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=92.90 E-value=0.16 Score=61.58 Aligned_cols=10 Identities=50% Similarity=0.518 Sum_probs=4.6
Q ss_pred HHHHHHhhhh
Q 036026 177 FYQTLMKREA 186 (442)
Q Consensus 177 fy~sL~krda 186 (442)
|.+.|..|.+
T Consensus 1745 fl~TLHDR~G 1754 (2039)
T PRK15319 1745 QMQTLYDREG 1754 (2039)
T ss_pred hcccHHHcCC
Confidence 3344555544
No 11
>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]
Probab=91.71 E-value=2.3 Score=41.53 Aligned_cols=93 Identities=18% Similarity=0.258 Sum_probs=60.5
Q ss_pred hhhhhcCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHhhc-------cCCCCC--Cchh--hhHHhhhhhHHH---
Q 036026 342 SRYREFGIPVDWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAM-------SRPEKE--PNRE--FLLLQGVRFAFR--- 407 (442)
Q Consensus 342 ~~~~~~~ip~~~~ld~~~~~~ik~~sv~la~~~m~rv~~el~~~-------~~~~~~--~~~~--~ll~~~~~fa~r--- 407 (442)
.|++..||-.+=|.-..-+++-|+--++---.|+.+|++|-+.+ .|.+.- ..-+ +.+.-.+.--=|
T Consensus 97 ~Rce~LGIgmYN~HPGSt~~~~kee~l~~ia~~in~a~eetk~V~ivlEnMAGqGn~vG~tfeelk~ii~~Ikdk~RigV 176 (281)
T KOG3997|consen 97 QRCEKLGIGMYNFHPGSTVGKEKEECLTTIAETINFAVEETKNVIIVLENMAGQGNSVGGTFEELKFIIGKIKDKSRIGV 176 (281)
T ss_pred HHHHHhCceeeecCCCccccccHHHHHHHHHHHHHHHHHhccceEEEeecccCCCCcccccHHHHHHHHHhhcchhhhee
Confidence 45778888776666666778888777766668999999886542 222211 1111 113333332223
Q ss_pred ----HhhhccccchhHhHHHHHHHHhhhhhc
Q 036026 408 ----VHQFAGGFDAESMKAFEVLRSRVHKQT 434 (442)
Q Consensus 408 ----v~~fagg~d~~~~~~~~el~~~~~~~~ 434 (442)
-|+||+|+|=+|.++|+|+-++.....
T Consensus 177 ClDTCH~FaaGyDI~Tee~y~evmkeFdevV 207 (281)
T KOG3997|consen 177 CLDTCHTFAAGYDIRTEEAYEEVMKEFDEVV 207 (281)
T ss_pred eHhhhhhhccccccchHHHHHHHHHHHHHHh
Confidence 399999999999999999988766543
No 12
>PHA01732 proline-rich protein
Probab=90.38 E-value=1.1 Score=37.45 Aligned_cols=12 Identities=25% Similarity=0.174 Sum_probs=4.8
Q ss_pred chhHHHHHHHHH
Q 036026 171 APELVEFYQTLM 182 (442)
Q Consensus 171 aP~L~efy~sL~ 182 (442)
++.|.+.-..+.
T Consensus 44 apki~~~~skrg 55 (94)
T PHA01732 44 APKIREAQSKRG 55 (94)
T ss_pred hhHHHHHHHHHH
Confidence 344444433333
No 13
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=89.57 E-value=4.3 Score=46.61 Aligned_cols=17 Identities=12% Similarity=-0.003 Sum_probs=10.9
Q ss_pred ccCchhHHHHHHHHHhh
Q 036026 168 VQRAPELVEFYQTLMKR 184 (442)
Q Consensus 168 v~RaP~L~efy~sL~kr 184 (442)
+...+.+..++|...+-
T Consensus 390 ~~p~~~lk~l~wdk~~~ 406 (833)
T KOG1922|consen 390 AQPKNKLKPLHWDKTRG 406 (833)
T ss_pred CCCCCCCCCccccccCC
Confidence 33456677788877654
No 14
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=89.30 E-value=1.5 Score=46.10 Aligned_cols=6 Identities=17% Similarity=0.446 Sum_probs=2.5
Q ss_pred HHHHhh
Q 036026 252 VFVNWL 257 (442)
Q Consensus 252 ~Fv~wl 257 (442)
.|.+-+
T Consensus 478 ~FMkEM 483 (487)
T KOG4672|consen 478 AFMKEM 483 (487)
T ss_pred HHHHHH
Confidence 444433
No 15
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=84.47 E-value=6.4 Score=40.85 Aligned_cols=7 Identities=29% Similarity=0.890 Sum_probs=3.2
Q ss_pred HHHHHhh
Q 036026 178 YQTLMKR 184 (442)
Q Consensus 178 y~sL~kr 184 (442)
|..+|+|
T Consensus 362 FEdiM~R 368 (498)
T KOG4849|consen 362 FEDIMTR 368 (498)
T ss_pred HHHHHhh
Confidence 4444544
No 16
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=83.84 E-value=3.5 Score=43.65 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=14.4
Q ss_pred hhhhHHHHHHHHHHHHHHhh
Q 036026 22 LALEREKQIKEKAEKARAYR 41 (442)
Q Consensus 22 l~~d~~~~i~~~~~k~~~~~ 41 (442)
|+|=.|+.+++-.|+.+..+
T Consensus 158 FDLWKekmLqdted~~kekr 177 (518)
T KOG1830|consen 158 FDLWKEKMLQDTEDKMKEKR 177 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 67778888888887655443
No 17
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=83.14 E-value=6 Score=44.83 Aligned_cols=11 Identities=27% Similarity=0.320 Sum_probs=5.9
Q ss_pred CCCCchhhhhh
Q 036026 52 HPTLPPKLALL 62 (442)
Q Consensus 52 ~~~L~pkl~~~ 62 (442)
-..+.+.+..|
T Consensus 534 ~~t~~p~~kgi 544 (894)
T KOG0132|consen 534 GTTGPPEWKGI 544 (894)
T ss_pred CccCCcccccc
Confidence 34455666555
No 18
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.81 E-value=8.1 Score=39.93 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=10.9
Q ss_pred Hhhhhhhhhchhhhhhhhcc
Q 036026 255 NWLDEELSFLVDERAVLKHF 274 (442)
Q Consensus 255 ~wld~eL~~L~de~~vLK~F 274 (442)
...++++..+-.++.-||++
T Consensus 221 ~r~eeeme~~~aeq~slkRt 240 (365)
T KOG2391|consen 221 RRREEEMERLQAEQESLKRT 240 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555556655
No 19
>PRK15313 autotransport protein MisL; Provisional
Probab=78.98 E-value=4.6 Score=46.77 Aligned_cols=8 Identities=25% Similarity=0.227 Sum_probs=3.8
Q ss_pred HHHHhhhh
Q 036026 179 QTLMKREA 186 (442)
Q Consensus 179 ~sL~krda 186 (442)
..|..|.+
T Consensus 655 ~tLhDR~G 662 (955)
T PRK15313 655 TRLHDRLG 662 (955)
T ss_pred ccHHHhCC
Confidence 34555533
No 20
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=75.15 E-value=7 Score=44.25 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=10.1
Q ss_pred hHHHHHHHHHH-HHHHhhhccCCC
Q 036026 25 EREKQIKEKAE-KARAYRFRDNSN 47 (442)
Q Consensus 25 d~~~~i~~~~~-k~~~~~~~~~~~ 47 (442)
.|+.....+.+ ..|+--|+....
T Consensus 606 aRtraa~~Laqa~~raR~fG~~~~ 629 (759)
T PF05518_consen 606 ARTRAAIALAQARRRARAFGRADV 629 (759)
T ss_pred HHhHHHHHHHHHHHHHhhcCCCCc
Confidence 34444455544 333344444443
No 21
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=74.99 E-value=5.2 Score=42.57 Aligned_cols=9 Identities=44% Similarity=0.907 Sum_probs=3.9
Q ss_pred hhhcCCCcc
Q 036026 344 YREFGIPVD 352 (442)
Q Consensus 344 ~~~~~ip~~ 352 (442)
|.||-||=+
T Consensus 454 y~EfpvPEQ 462 (480)
T KOG2675|consen 454 YVEFPVPEQ 462 (480)
T ss_pred cccccChHH
Confidence 444444433
No 22
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=74.27 E-value=2.5 Score=49.64 Aligned_cols=7 Identities=43% Similarity=0.558 Sum_probs=3.5
Q ss_pred hhhcccc
Q 036026 409 HQFAGGF 415 (442)
Q Consensus 409 ~~fagg~ 415 (442)
||.|||.
T Consensus 602 yqLadgv 608 (2365)
T COG5178 602 YQLADGV 608 (2365)
T ss_pred HHHhcch
Confidence 5555543
No 23
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=71.45 E-value=11 Score=40.00 Aligned_cols=7 Identities=14% Similarity=0.145 Sum_probs=2.8
Q ss_pred hhhhHHH
Q 036026 22 LALEREK 28 (442)
Q Consensus 22 l~~d~~~ 28 (442)
..|.|++
T Consensus 76 yGLnFqs 82 (409)
T KOG4590|consen 76 YGLTFQS 82 (409)
T ss_pred hcccccC
Confidence 3444433
No 24
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=63.34 E-value=16 Score=38.01 Aligned_cols=11 Identities=18% Similarity=0.111 Sum_probs=5.7
Q ss_pred cccCCCCccch
Q 036026 10 AEKYPAYKDRH 20 (442)
Q Consensus 10 ~~~~P~f~~r~ 20 (442)
-+..|+++|..
T Consensus 68 ~~~~~~~s~~G 78 (498)
T KOG4849|consen 68 IGAKPATSSEG 78 (498)
T ss_pred ccCCccccccC
Confidence 34555655543
No 25
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=61.45 E-value=15 Score=40.05 Aligned_cols=79 Identities=18% Similarity=0.299 Sum_probs=41.6
Q ss_pred hhhhccCCChh---hHHHH-HHHHhhh----hHHHHHHHhhc-cccC---CCCCchHH-HHHHHHHHHHHHHHHHHHHHh
Q 036026 269 AVLKHFDWPEG---KADAL-REAAFEY----QDLVKLEKQVS-SFVD---DPGLPCES-ALKKMYKLLEKVEQSVYALLR 335 (442)
Q Consensus 269 ~vLK~F~~pe~---kl~aL-re~~~~Y----~~L~~l~~~l~-~~~~---~~~~~~~~-~lkKm~~ll~K~e~sv~~l~R 335 (442)
-|.++|+.... ++.+| |.++.+| ++|..+|+.-+ +|.- --+-.+.. ...+|..+++.+-+.|..|--
T Consensus 522 ~vVE~FpessDLYSEiGA~tRSAkVDf~qL~DNL~qlErrCKaSWe~L~~Iakhe~~p~l~~r~~~fl~~cA~RI~~LKi 601 (817)
T KOG1925|consen 522 LVVETFPESSDLYSEIGALTRSAKVDFEQLTDNLGQLERRCKASWESLRSIAKHELAPALRARLTHFLDQCARRIAMLKI 601 (817)
T ss_pred HHHHhCCcchhHHHHhHhhhhhhhccHHHHHHHHHHHHHHhhHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566754433 45666 6777777 45555666432 2310 00000111 123788888888877766644
Q ss_pred chHHHhhhhhhc
Q 036026 336 TRDMAISRYREF 347 (442)
Q Consensus 336 trd~~~~~~~~~ 347 (442)
.--....||-+|
T Consensus 602 vhrr~~NRfHSF 613 (817)
T KOG1925|consen 602 VHRRVCNRFHSF 613 (817)
T ss_pred HHHHHHHHHHHH
Confidence 444456677654
No 26
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.07 E-value=52 Score=36.49 Aligned_cols=10 Identities=10% Similarity=0.567 Sum_probs=4.6
Q ss_pred HHHHHHHHHh
Q 036026 174 LVEFYQTLMK 183 (442)
Q Consensus 174 L~efy~sL~k 183 (442)
+...|..+..
T Consensus 467 ~~~~w~~~~~ 476 (585)
T PRK14950 467 LEAIWKQILR 476 (585)
T ss_pred HHHHHHHHHH
Confidence 4444554443
No 27
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=53.09 E-value=1e+02 Score=36.77 Aligned_cols=29 Identities=14% Similarity=0.020 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCCCchhhhhhhcCC
Q 036026 27 EKQIKEKAEKARAYRFRDNSNFDSKHPTLPPKLALLKEKP 66 (442)
Q Consensus 27 ~~~i~~~~~k~~~~~~~~~~~l~~~~~~L~pkl~~~~~~~ 66 (442)
|-+|+++-++-+.. +.+.++.|..+++.-
T Consensus 8 ewlV~e~y~~y~~d-----------p~sVd~~W~~~f~~~ 36 (1228)
T PRK12270 8 EWLVEEMYQQYLAD-----------PNSVDPSWREFFADY 36 (1228)
T ss_pred hHHHHHHHHHHhcC-----------ccccCHHHHHHHhhc
Confidence 34556665555433 567899999998873
No 28
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.18 E-value=89 Score=32.93 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=6.6
Q ss_pred cccccccccCCCCCC
Q 036026 87 ISKMKFSQIEKRPPR 101 (442)
Q Consensus 87 ~~~~~~~~~~~~~p~ 101 (442)
|+.+-.++...+.++
T Consensus 382 ~~~Lvvskmaq~l~~ 396 (488)
T KOG3895|consen 382 ISELVVSKMAQLLTR 396 (488)
T ss_pred HHHHHHHHhhhccCC
Confidence 444444444444444
No 29
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=49.87 E-value=21 Score=38.11 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=5.6
Q ss_pred hhhHHHHHHHhhccc
Q 036026 290 EYQDLVKLEKQVSSF 304 (442)
Q Consensus 290 ~Y~~L~~l~~~l~~~ 304 (442)
+|.+..=.||+-..|
T Consensus 453 Dy~EfpvPEQfkt~~ 467 (480)
T KOG2675|consen 453 DYVEFPVPEQFKTKF 467 (480)
T ss_pred CcccccChHHHhhhc
Confidence 343333333333333
No 30
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=49.21 E-value=2.6e+02 Score=32.25 Aligned_cols=105 Identities=15% Similarity=0.096 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhchHHHhhhhhhcCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchh--hhHHh
Q 036026 323 LEKVEQSVYALLRTRDMAISRYREFGIPVDWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNRE--FLLLQ 400 (442)
Q Consensus 323 l~K~e~sv~~l~Rtrd~~~~~~~~~~ip~~~~ld~~~~~~ik~~sv~la~~~m~rv~~el~~~~~~~~~~~~~--~ll~~ 400 (442)
+..|+.++..+...=++++.|+..|-=.+... |++.-|+....++...+ .++++.|....+....+... ..=|.
T Consensus 389 v~~L~~s~~k~f~lae~Av~RC~~fT~G~~~~---~Ll~Ald~~~~~y~~~~-~~~l~~lr~~~~~~~~~~~~~~~eDWs 464 (766)
T PF10191_consen 389 VRRLEESIPKLFGLAEEAVDRCIAFTGGYGVP---GLLKALDSIFSQYLSSL-TATLRSLRKSCGLDSTATSSASSEDWS 464 (766)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhCCccHH---HHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCcccccccccccHH
Confidence 44455566666666677788887654443222 66666666666665553 35667776543333211111 13588
Q ss_pred hhhhHHHHhhhccccchhHhHHHHHHHHhhh
Q 036026 401 GVRFAFRVHQFAGGFDAESMKAFEVLRSRVH 431 (442)
Q Consensus 401 ~~~fa~rv~~fagg~d~~~~~~~~el~~~~~ 431 (442)
.||-|+++.|-||.+-.+.-..=..||.++-
T Consensus 465 ~fQ~aL~LL~~~g~l~~rl~~fE~~l~~~l~ 495 (766)
T PF10191_consen 465 LFQNALQLLQTCGELLSRLSQFEQSLRSRLL 495 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887776666666666664
No 31
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=43.47 E-value=43 Score=33.44 Aligned_cols=8 Identities=13% Similarity=-0.147 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q 036026 33 KAEKARAY 40 (442)
Q Consensus 33 ~~~k~~~~ 40 (442)
++|=+.+.
T Consensus 56 lADv~wva 63 (253)
T PF05308_consen 56 LADVLWVA 63 (253)
T ss_pred hhhhccee
Confidence 33334433
No 32
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=37.21 E-value=84 Score=31.26 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=37.2
Q ss_pred hHHHHHHHhhcccc-----CCCCCchHHHHHHHHHHHHHHHHHHHHHHhchHHHhhhhhhc
Q 036026 292 QDLVKLEKQVSSFV-----DDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMAISRYREF 347 (442)
Q Consensus 292 ~~L~~l~~~l~~~~-----~~~~~~~~~~lkKm~~ll~K~e~sv~~l~Rtrd~~~~~~~~~ 347 (442)
.||..+...|..+. .+|..++...|.-+-.-|-+|+..+..+++.+|..-+..-+|
T Consensus 192 ~dL~~ii~~lN~~~~~~d~t~~~~qi~Kilnah~~sLqwl~d~st~~e~k~d~i~K~~~~~ 252 (254)
T KOG2196|consen 192 EDLKQIIKSLNTMSKTVDKTDPIIQIEKILNAHMDSLQWLDDNSTQLEKKLDKIKKLKDDH 252 (254)
T ss_pred hhHHHHHHHHHhccCccccCCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccc
Confidence 66777777777664 234445555566666666778888888999998866554443
No 33
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.52 E-value=2.6e+02 Score=30.41 Aligned_cols=15 Identities=20% Similarity=0.102 Sum_probs=7.0
Q ss_pred hhHHHHHHHHHHHHH
Q 036026 24 LEREKQIKEKAEKAR 38 (442)
Q Consensus 24 ~d~~~~i~~~~~k~~ 38 (442)
+||+---++...|..
T Consensus 319 ~dfSDDEkEaeak~~ 333 (483)
T KOG2236|consen 319 QDFSDDEKEAEAKQM 333 (483)
T ss_pred hccchHHHHHHHHHH
Confidence 444444444444444
No 34
>CHL00172 cpeB phycoerythrin beta subunit; Provisional
Probab=36.20 E-value=53 Score=31.14 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=15.9
Q ss_pred hhhhcCCCcccccccchhhHHHHHHHH
Q 036026 343 RYREFGIPVDWLLDTGVVGKIKLSSVQ 369 (442)
Q Consensus 343 ~~~~~~ip~~~~ld~~~~~~ik~~sv~ 369 (442)
-|+++|+|..|+.. -+..||.+++.
T Consensus 116 ~Y~sLgVP~~~~~~--~~~~mk~aa~~ 140 (177)
T CHL00172 116 TYIALGVPANSSAR--AVSIMKASAVA 140 (177)
T ss_pred HHHHHCCCchHHHH--HHHHHHHHHHH
Confidence 39999999999743 23344444433
No 35
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=35.94 E-value=1e+02 Score=34.05 Aligned_cols=28 Identities=11% Similarity=0.405 Sum_probs=15.4
Q ss_pred hhhcCCCcccccccchhhHH--HHHHHHHHHHHH
Q 036026 344 YREFGIPVDWLLDTGVVGKI--KLSSVQLARKYM 375 (442)
Q Consensus 344 ~~~~~ip~~~~ld~~~~~~i--k~~sv~la~~~m 375 (442)
|...+.+.-| |||.-. -.|+|....-|+
T Consensus 373 ft~~n~~Lvw----GIiR~lLPGQAvVt~~Q~rL 402 (582)
T PF03276_consen 373 FTNQNFDLVW----GIIRPLLPGQAVVTAMQQRL 402 (582)
T ss_pred eecCCcchhh----hhhhccCChHHHHHHHHHHh
Confidence 5555555556 666553 256666555554
No 36
>COG4749 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.38 E-value=86 Score=29.47 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=20.7
Q ss_pred hhHHhhhh-------hHHHHhhhccccchhHhHHHHHHHH
Q 036026 396 FLLLQGVR-------FAFRVHQFAGGFDAESMKAFEVLRS 428 (442)
Q Consensus 396 ~ll~~~~~-------fa~rv~~fagg~d~~~~~~~~el~~ 428 (442)
.+|.++|+ ++||.| |+||.-+++- |+||-+
T Consensus 88 ~~l~d~vqtSl~avl~sfe~Y-v~g~~~~~as--~~el~k 124 (196)
T COG4749 88 NELFDFVQTSLKAVLLSFELY-VEGKISDKAS--FEELLK 124 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-Hhcccccccc--HHHHHH
Confidence 56766655 588988 7799887654 666543
No 37
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=34.38 E-value=1.5e+02 Score=31.30 Aligned_cols=9 Identities=11% Similarity=0.493 Sum_probs=4.7
Q ss_pred hhhhhhhcc
Q 036026 266 DERAVLKHF 274 (442)
Q Consensus 266 de~~vLK~F 274 (442)
+..+|+++|
T Consensus 310 g~~iVYRDy 318 (457)
T KOG0559|consen 310 GDDIVYRDY 318 (457)
T ss_pred CCeeEEeec
Confidence 334555555
No 38
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.69 E-value=90 Score=29.03 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=23.3
Q ss_pred hhhhccCCChhhHHHHHHHHhhhhHHHHHHH
Q 036026 269 AVLKHFDWPEGKADALREAAFEYQDLVKLEK 299 (442)
Q Consensus 269 ~vLK~F~~pe~kl~aLre~~~~Y~~L~~l~~ 299 (442)
+.=+.|+|-+..|++.++...+..+|..-|+
T Consensus 73 ~CGkpyPWt~~~L~aa~el~ee~eeLs~dek 103 (158)
T PF10083_consen 73 NCGKPYPWTENALEAANELIEEDEELSPDEK 103 (158)
T ss_pred hCCCCCchHHHHHHHHHHHHHHhhcCCHHHH
Confidence 3456889999999999998887766655443
No 39
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.84 E-value=1.4e+02 Score=33.67 Aligned_cols=6 Identities=17% Similarity=0.041 Sum_probs=2.2
Q ss_pred HHHHHH
Q 036026 26 REKQIK 31 (442)
Q Consensus 26 ~~~~i~ 31 (442)
.+.++.
T Consensus 441 l~~~w~ 446 (620)
T PRK14948 441 LEELWQ 446 (620)
T ss_pred HHHHHH
Confidence 333333
No 40
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=30.89 E-value=1.7e+02 Score=22.02 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=27.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q 036026 308 PGLPCESALKKMYKLLEKVEQSVYALLRTRDMA 340 (442)
Q Consensus 308 ~~~~~~~~lkKm~~ll~K~e~sv~~l~Rtrd~~ 340 (442)
+..+|.....-+..-++.++..+..|.++++..
T Consensus 30 ~~~~~~~~~~~l~~~~~~i~~~i~~L~~~~~~L 62 (65)
T PF09278_consen 30 GDPPCADRRALLEEKLEEIEEQIAELQALRAQL 62 (65)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555788888888888889999999999888765
No 41
>TIGR01339 phycocy_beta phycocyanin, beta subunit. This model excludes the closely related phycoerythrocyanin beta subunit.
Probab=30.16 E-value=68 Score=30.17 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=18.1
Q ss_pred hhhcCCCcccccccchhhHHHHHHHHHH
Q 036026 344 YREFGIPVDWLLDTGVVGKIKLSSVQLA 371 (442)
Q Consensus 344 ~~~~~ip~~~~ld~~~~~~ik~~sv~la 371 (442)
|+.+|+|+.||.. -+..||.+++.+.
T Consensus 115 Y~aLgVP~~~~v~--al~~mK~~~~~~~ 140 (170)
T TIGR01339 115 YLALGTPGSSVAA--GVQKMKDAALAIV 140 (170)
T ss_pred HHHhCCCchHHHH--HHHHHHHHHHHHh
Confidence 8999999999753 3445666555554
No 42
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=30.10 E-value=1.5e+02 Score=32.84 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=10.7
Q ss_pred CchHHHHHHHHHHHHH
Q 036026 310 LPCESALKKMYKLLEK 325 (442)
Q Consensus 310 ~~~~~~lkKm~~ll~K 325 (442)
||-.+++.-|+.+||.
T Consensus 389 LPGQAvVt~~Q~rLDq 404 (582)
T PF03276_consen 389 LPGQAVVTAMQQRLDQ 404 (582)
T ss_pred CChHHHHHHHHHHhhc
Confidence 5666666677777665
No 43
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.21 E-value=39 Score=36.62 Aligned_cols=32 Identities=3% Similarity=0.171 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCCCCCchhhhhhh
Q 036026 26 REKQIKEKAEKARAYRFRDNSNFDSKHPTLPPKLALLK 63 (442)
Q Consensus 26 ~~~~i~~~~~k~~~~~~~~~~~l~~~~~~L~pkl~~~~ 63 (442)
+..++++|+++++.++...+. ..|+.+|..++
T Consensus 58 V~~~FddkVnqSALteqQ~ka------sELEKqLaaLr 89 (475)
T PRK13729 58 VDTTFDDKVRQHATTEMQVTA------AQMQKQYEEIR 89 (475)
T ss_pred ecchhHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 356678889999998876543 34566666663
No 44
>COG1084 Predicted GTPase [General function prediction only]
Probab=27.46 E-value=1.4e+02 Score=31.27 Aligned_cols=88 Identities=22% Similarity=0.347 Sum_probs=55.1
Q ss_pred cccchHHHHHHHHhhhhhhhhchhhhhhhhccCCChhhHHHHHHHHhhhhHHHHH---HHhhccccCCCCCchHHHHHHH
Q 036026 243 SFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLVKL---EKQVSSFVDDPGLPCESALKKM 319 (442)
Q Consensus 243 ~f~diedl~~Fv~wld~eL~~L~de~~vLK~F~~pe~kl~aLre~~~~Y~~L~~l---~~~l~~~~~~~~~~~~~~lkKm 319 (442)
.|-++++|..|..-+-+.+.-..+=++.|..+.|-.. .+++...+|..+.+- ....+.. ..+++.+|
T Consensus 68 ~~P~id~LhpFY~eLidvl~d~d~~k~sLs~v~~A~~---~i~~l~~eYi~~lk~a~~~~~~~~l-------rR~a~GR~ 137 (346)
T COG1084 68 RFPSLDDLHPFYRELIDVLVDIDHLKISLSAVSWASK---IIEKLAREYIRLLKAAKDPKEANQL-------RRQAFGRV 137 (346)
T ss_pred hCCCccccChHHHHHHHHHhCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCChhHHHHH-------HHHHHHHH
Confidence 4677888888875444343333333456666666644 445555677554442 1222223 36788899
Q ss_pred HHHHHHHHHHHHHHHhchHHH
Q 036026 320 YKLLEKVEQSVYALLRTRDMA 340 (442)
Q Consensus 320 ~~ll~K~e~sv~~l~Rtrd~~ 340 (442)
.++++++..+..-|...|+.+
T Consensus 138 aSiik~i~~~L~fL~~~r~~l 158 (346)
T COG1084 138 ASIIKKIDDDLEFLRKARDHL 158 (346)
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 999999999888887777653
No 45
>CHL00086 apcA allophycocyanin alpha subunit
Probab=26.97 E-value=93 Score=28.94 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=17.8
Q ss_pred hhhcCCCcccccccchhhHHHHHHHHH
Q 036026 344 YREFGIPVDWLLDTGVVGKIKLSSVQL 370 (442)
Q Consensus 344 ~~~~~ip~~~~ld~~~~~~ik~~sv~l 370 (442)
|+..|+|+.||.. -|..||.+++++
T Consensus 116 Y~aLgvP~~~~v~--ai~~mk~~~~~~ 140 (161)
T CHL00086 116 YNSLGTPISGVAE--GVRSMKSVACSL 140 (161)
T ss_pred HHHhCCCHHHHHH--HHHHHHHHHHHH
Confidence 9999999999754 345566665444
No 46
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=26.73 E-value=59 Score=30.13 Aligned_cols=58 Identities=12% Similarity=0.238 Sum_probs=39.1
Q ss_pred ccccchhhHhhhhccccchHHHHHH-HHhhhhhhhhchhhhhhhhccCCChhhHHHHHH
Q 036026 229 GDFVQSLAAEVRAASFTTVEDLVVF-VNWLDEELSFLVDERAVLKHFDWPEGKADALRE 286 (442)
Q Consensus 229 ~dfI~~L~~eIraa~f~diedl~~F-v~wld~eL~~L~de~~vLK~F~~pe~kl~aLre 286 (442)
.+|++.|.+.++...-.|.+|...| .+++|+....=.+|..+++.++.|++..+.+..
T Consensus 4 ~efL~~L~~~L~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~ 62 (181)
T PF08006_consen 4 NEFLNELEKYLKKLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILA 62 (181)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 3566677776655444555555543 577776666556788999999999886666554
No 47
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.99 E-value=1.8e+02 Score=32.62 Aligned_cols=108 Identities=24% Similarity=0.255 Sum_probs=54.7
Q ss_pred hhhhhhcccccccccchhhHhhhhccccchHHHHHHHHhhhhhhhhchhhh----hhhhccCCChhhHHHHHHHHhhhhH
Q 036026 218 LLAVKADVETQGDFVQSLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDER----AVLKHFDWPEGKADALREAAFEYQD 293 (442)
Q Consensus 218 Llaik~dve~q~dfI~~L~~eIraa~f~diedl~~Fv~wld~eL~~L~de~----~vLK~F~~pe~kl~aLre~~~~Y~~ 293 (442)
+..+.+++.+-.+-+..+..+.....++ ..||..-.+.+.++...+.-.. +|++.|-...++++.|++.+.--.+
T Consensus 80 l~~v~e~v~km~~t~~~l~s~ls~~k~~-t~dli~~t~~l~~e~~~le~r~kii~~Fl~~fqLs~~E~~~L~~~g~i~e~ 158 (655)
T KOG3758|consen 80 LDRVSEDVEKMANTCDKLKSNLSTSKAT-TQDLIQKTETLKEEAAQLELRKKIINAFLDNFQLSSEELDLLTESGPIDED 158 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHhcCCcchHH
Confidence 3444555555555455555555333333 2334333444444544444333 7899998888889999995332222
Q ss_pred HHHHHHhhccccCCCC--------CchHHHHHHHHHHHHHH
Q 036026 294 LVKLEKQVSSFVDDPG--------LPCESALKKMYKLLEKV 326 (442)
Q Consensus 294 L~~l~~~l~~~~~~~~--------~~~~~~lkKm~~ll~K~ 326 (442)
.-+.+..+.+.+++-+ ..-....+||..++|+.
T Consensus 159 FF~vL~rvqeIh~~~~~Ll~~~~~~Ag~eime~M~~~~E~a 199 (655)
T KOG3758|consen 159 FFKVLDRVQEIHDNCRLLLQTPNQTAGLEIMEKMALIQEGA 199 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 2233333333332111 11234455777777553
No 48
>PF15605 Toxin_52: Putative toxin 52
Probab=25.88 E-value=2.1e+02 Score=24.84 Aligned_cols=48 Identities=27% Similarity=0.445 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhhHHHHHHHhhccccCCCCCc------hHHHHHHHHHHHHHHHH
Q 036026 281 ADALREAAFEYQDLVKLEKQVSSFVDDPGLP------CESALKKMYKLLEKVEQ 328 (442)
Q Consensus 281 l~aLre~~~~Y~~L~~l~~~l~~~~~~~~~~------~~~~lkKm~~ll~K~e~ 328 (442)
++-++|....|+.|......|...-.||.++ +...+.+.-.+++|+|.
T Consensus 46 wdHlqEm~da~~GL~n~~~~le~~L~np~l~~~~r~~lq~~l~ea~~~l~kiE~ 99 (103)
T PF15605_consen 46 WDHLQEMQDAYRGLVNRKRTLEGSLKNPNLSGRTRELLQSKLNEANNYLDKIED 99 (103)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999998888777755677653 33444455555555553
No 49
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=25.74 E-value=1.8e+02 Score=28.19 Aligned_cols=16 Identities=19% Similarity=0.245 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHHHHH
Q 036026 24 LEREKQIKEKAEKARA 39 (442)
Q Consensus 24 ~d~~~~i~~~~~k~~~ 39 (442)
+|+=.+|+.++.+.-+
T Consensus 54 ~~sV~~m~~~i~~~n~ 69 (205)
T PF12238_consen 54 FDSVPLMKHKISHMNA 69 (205)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555555554433
No 50
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=25.68 E-value=3.9e+02 Score=29.37 Aligned_cols=95 Identities=20% Similarity=0.251 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHhhhhhhhh---chhhhhhhhccCCChhhHHHHHHHHhhh-hHHHHHHHhhccccCCCCCchHHHHHHH
Q 036026 244 FTTVEDLVVFVNWLDEELSF---LVDERAVLKHFDWPEGKADALREAAFEY-QDLVKLEKQVSSFVDDPGLPCESALKKM 319 (442)
Q Consensus 244 f~diedl~~Fv~wld~eL~~---L~de~~vLK~F~~pe~kl~aLre~~~~Y-~~L~~l~~~l~~~~~~~~~~~~~~lkKm 319 (442)
|++++.+..-.+.+.+.+.. +..+..+|. +++.+|.....-| .-...+.++-..| --+++||
T Consensus 270 ~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~------ek~r~l~~D~nk~~~~~~~mk~K~~~~--------~g~l~kl 335 (622)
T COG5185 270 NTDIANLKTQNDNLYEKIQEAMKISQKIKTLR------EKWRALKSDSNKYENYVNAMKQKSQEW--------PGKLEKL 335 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhhHHHHHHHHHHHHHHHHhc--------chHHHHH
Q ss_pred HHHHHHHHHHHHHHHhchHHHhhhhhhcCCCcc
Q 036026 320 YKLLEKVEQSVYALLRTRDMAISRYREFGIPVD 352 (442)
Q Consensus 320 ~~ll~K~e~sv~~l~Rtrd~~~~~~~~~~ip~~ 352 (442)
..-+++.|.++..|-..+|++-+.....||.++
T Consensus 336 ~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e 368 (622)
T COG5185 336 KSEIELKEEEIKALQSNIDELHKQLRKQGISTE 368 (622)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHH
No 51
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=25.22 E-value=78 Score=30.72 Aligned_cols=64 Identities=25% Similarity=0.311 Sum_probs=30.5
Q ss_pred cccccccccchhhHhh--hhccccchHHHHHHHHhhhhhhhh---chhhhhhhhccCCChhhHHHHHHHHhhh
Q 036026 224 DVETQGDFVQSLAAEV--RAASFTTVEDLVVFVNWLDEELSF---LVDERAVLKHFDWPEGKADALREAAFEY 291 (442)
Q Consensus 224 dve~q~dfI~~L~~eI--raa~f~diedl~~Fv~wld~eL~~---L~de~~vLK~F~~pe~kl~aLre~~~~Y 291 (442)
-+....-|-++|..+. ....+.+-++ .|--.+++...+ |..-..+|+ .|+.+.++.-|+...+|
T Consensus 21 ~iK~~~pf~t~lFd~~~~~~~s~q~~ee--~F~~l~~sV~~m~~~i~~~n~fl~--~~~~~~~~~~~~~~~~Y 89 (205)
T PF12238_consen 21 LIKENPPFKTSLFDETVLSNLSGQSDEE--KFKSLFDSVPLMKHKISHMNAFLN--DWPPHMLEEGREKMTKY 89 (205)
T ss_pred HHccCCCCchhhhhHHHHHhcccCCHHH--HHHHHHHHHHHHHHHHHHHHHHHc--cCchhhhhccHHHHHHH
Confidence 3333334445555433 2334444444 443444444333 323334555 57777666666666655
No 52
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=24.87 E-value=1.9e+02 Score=30.77 Aligned_cols=94 Identities=15% Similarity=0.051 Sum_probs=52.0
Q ss_pred cchHHHHHHHHhhhhhhhhchhhhhhhhccCCChhhHHHHHHHHhh-hhHHHHHHHhhccccCCC----CCchHHHHHHH
Q 036026 245 TTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFE-YQDLVKLEKQVSSFVDDP----GLPCESALKKM 319 (442)
Q Consensus 245 ~diedl~~Fv~wld~eL~~L~de~~vLK~F~~pe~kl~aLre~~~~-Y~~L~~l~~~l~~~~~~~----~~~~~~~lkKm 319 (442)
.+.+++...+..+|...-....-+.+++.++.+ ++++.|++.... ...|...++++-.+..-| ++-|-.+....
T Consensus 94 ~~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~-eE~~~l~~~~~~~~~~L~~~Eqfl~~l~~ip~~~~Rl~~~~f~~~f 172 (432)
T smart00498 94 MSYEEICEAILEGDEDVLSVDLLEQLLKYAPTK-EELKKLREYKEEDPEELARAEQFLLLISNIPYLEERLNALLFKANF 172 (432)
T ss_pred CCHHHHHHHHHhcChhhCCHHHHHHHHhhCcCH-HHHHHHHHhcccchhhcchHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 455677666666775433333344677777755 447888877655 677777777766655444 23333333333
Q ss_pred HHHHHHHHHHHHHHHhchHH
Q 036026 320 YKLLEKVEQSVYALLRTRDM 339 (442)
Q Consensus 320 ~~ll~K~e~sv~~l~Rtrd~ 339 (442)
...++.+...+..+.+.-++
T Consensus 173 ~~~~~~l~~~l~~l~~a~~~ 192 (432)
T smart00498 173 EEEVEDLKPQLEKVEAACEE 192 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444445444444333
No 53
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=24.80 E-value=2.9e+02 Score=30.03 Aligned_cols=9 Identities=22% Similarity=0.634 Sum_probs=5.5
Q ss_pred hhhhhhhhh
Q 036026 202 DARSNMIGE 210 (442)
Q Consensus 202 d~rs~li~e 210 (442)
.....||||
T Consensus 503 ~~q~~~lg~ 511 (562)
T TIGR01628 503 QMQKQVLGE 511 (562)
T ss_pred HHHHHHHHH
Confidence 445677774
No 54
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=24.59 E-value=4.3e+02 Score=22.25 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhchHHHhhhhh
Q 036026 316 LKKMYKLLEKVEQSVYALLRTRDMAISRYR 345 (442)
Q Consensus 316 lkKm~~ll~K~e~sv~~l~Rtrd~~~~~~~ 345 (442)
+..|+.-+.++|..|+.|..--..+..+|+
T Consensus 68 Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 68 IDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444666666666666544444444454
No 55
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=24.52 E-value=1e+02 Score=31.64 Aligned_cols=175 Identities=16% Similarity=0.081 Sum_probs=0.0
Q ss_pred CCccCchhHHHHHHHHHhhhhccCCCccccCCCCC----hhhhhhhhhhhhccchhhhhhh--hcccccccccchhhH--
Q 036026 166 DKVQRAPELVEFYQTLMKREAKKDTSSLISSTSNT----SDARSNMIGEIENKSSFLLAVK--ADVETQGDFVQSLAA-- 237 (442)
Q Consensus 166 ~kv~RaP~L~efy~sL~krdak~~~ss~~ss~~~~----sd~rs~li~eIenrS~~Llaik--~dve~q~dfI~~L~~-- 237 (442)
...+....++.+||.... ......++|+..... ..+...+...+..+........ .........+..|..
T Consensus 3 ~~~~p~~k~k~l~W~~i~--~~~~~~tiW~~~~~~~~~~~~d~~~le~~F~~~~~~~~~~~~~~~~~~~~~~~~iLd~kr 80 (370)
T PF02181_consen 3 KKPKPKKKLKPLHWDKIP--NSKIKGTIWSKIDEDEFNIDIDFEELEELFAKKEKEKKSKKKQASKKKKKKKISILDPKR 80 (370)
T ss_dssp -----SS-B------EES--SGGCTTSCCCCTCCHHHHCTSHHHHHHHHTBSCECHHHH----HCCCCTTCCESSS-HHH
T ss_pred CCCCCCCCCcCCCceecC--cccccCCccccCcccccchhhhHHHHHHHhccccccccccccccccccccccccccchHH
Q ss_pred ----hhhhccc-cchHHHHHHHHhhhhhhhhchhhhhhhhccCCChhhHHHHHHHHhhhhHHHHHHHhhccccCCC----
Q 036026 238 ----EVRAASF-TTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLVKLEKQVSSFVDDP---- 308 (442)
Q Consensus 238 ----eIraa~f-~diedl~~Fv~wld~eL~~L~de~~vLK~F~~pe~kl~aLre~~~~Y~~L~~l~~~l~~~~~~~---- 308 (442)
.|.=..| .+.+++..-+..+|...-....-..+++.+|.+++ +..|++.......|...|+++-.+-.-|
T Consensus 81 ~~ni~I~L~~~~~~~~~l~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE-~~~l~~~~~~~~~L~~~E~f~~~l~~ip~~~~ 159 (370)
T PF02181_consen 81 SQNIGIVLKKFKLSPEELIQAILNLDEEVLTEELLENLLKILPTPEE-IEALKAYKGDPATLGPAEQFLLELSKIPRLKE 159 (370)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHTTTTCCCTHHHHHHHHHHCGGHHH-HHHHHCTCTSGTTB-HHHHHHHHHTTSTTHHH
T ss_pred HHHHHHHhhccCCCHHHHHHHHHccCccccchHHHHHHHhcCCCchH-HHHHHHHhccHHhhccHHHHHHHHHHHHHHHH
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhchHHHhhh
Q 036026 309 GLPCESALKKMYKLLEKVEQSVYALLRTRDMAISR 343 (442)
Q Consensus 309 ~~~~~~~lkKm~~ll~K~e~sv~~l~Rtrd~~~~~ 343 (442)
++-|-.+.......++.++..+..+.+.-+++...
T Consensus 160 rl~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S 194 (370)
T PF02181_consen 160 RLEALLFKSEFEEQLEELKEKLEKLEAACEELRES 194 (370)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 56
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=24.35 E-value=6.6e+02 Score=24.38 Aligned_cols=128 Identities=15% Similarity=0.172 Sum_probs=64.9
Q ss_pred cchHHHHHHHHhhhhhhhhchhhhhhhhccC--CChhhHHHHHHHHhh----hhHHHHHHHhhccccCCCCCchHHHHHH
Q 036026 245 TTVEDLVVFVNWLDEELSFLVDERAVLKHFD--WPEGKADALREAAFE----YQDLVKLEKQVSSFVDDPGLPCESALKK 318 (442)
Q Consensus 245 ~diedl~~Fv~wld~eL~~L~de~~vLK~F~--~pe~kl~aLre~~~~----Y~~L~~l~~~l~~~~~~~~~~~~~~lkK 318 (442)
-+=+|+..+++-+|+.+....|-...|..++ .|++--+-+++.... +..+.+....|...... ..-+.+
T Consensus 77 ~~R~Dil~L~~~~D~i~D~~ed~A~~l~l~~~~ip~~~~e~~~~~~~~~~~a~~~~~~ai~~L~~~~e~-----~~~~~~ 151 (217)
T COG1392 77 FDREDILELIESQDDIADAAEDAAKLLLLRKPFIPEELDEEFLRLVDLSLKAAELLAEAIELLEDLLES-----ADRLLE 151 (217)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHH
Confidence 3668899999999998888888776666665 775533333332221 22222222222222110 122334
Q ss_pred HHHHHHHHHHHHHHHHhchHHHhhhhhhcCC--CcccccccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036026 319 MYKLLEKVEQSVYALLRTRDMAISRYREFGI--PVDWLLDTGVVGKIKLSSVQLARKYMKRVSTELEA 384 (442)
Q Consensus 319 m~~ll~K~e~sv~~l~Rtrd~~~~~~~~~~i--p~~~~ld~~~~~~ik~~sv~la~~~m~rv~~el~~ 384 (442)
|..-++++|++.+.+.|. ..-+=|...+. |++||. +.+|=+..-++|.. -++|+..++.
T Consensus 152 i~~eI~~~E~e~D~i~~~--l~k~Lf~~e~~~~~~~~~~----~~~i~~~i~~IaD~-~edva~rie~ 212 (217)
T COG1392 152 IIKEIEALEHECDDIQRE--LLKKLFSLETEINPIDVII----LKEIIEKIEDIADR-AEDVADRIES 212 (217)
T ss_pred HHHHHHHHHHHhhHHHHH--HHHHHHhcccccchHHHHH----HHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 444456778888888762 22222333333 466653 23332333334332 3456655543
No 57
>CHL00090 apcD allophycocyanin gamma subunit
Probab=24.27 E-value=83 Score=29.25 Aligned_cols=26 Identities=19% Similarity=0.507 Sum_probs=18.1
Q ss_pred hhhhcCCCcccccccchhhHHHHHHHHH
Q 036026 343 RYREFGIPVDWLLDTGVVGKIKLSSVQL 370 (442)
Q Consensus 343 ~~~~~~ip~~~~ld~~~~~~ik~~sv~l 370 (442)
-|+..|+|+.||.. -|..||.+++.+
T Consensus 115 ~Y~~LgvP~~~~v~--al~~mk~~~~~~ 140 (161)
T CHL00090 115 MYNSLGVPIIGMVD--SIQCLKEAALEV 140 (161)
T ss_pred HHHHhCCChHHHHH--HHHHHHHHHHHh
Confidence 39999999999864 345566665433
No 58
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=23.58 E-value=3.1e+02 Score=25.20 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 036026 314 SALKKMYKLLEKVEQSVYALLRT 336 (442)
Q Consensus 314 ~~lkKm~~ll~K~e~sv~~l~Rt 336 (442)
..+.|++..++|+++..+.|..+
T Consensus 68 ~Ll~k~e~~l~kL~Rr~~tL~ak 90 (153)
T PF08287_consen 68 HLLDKAEKHLEKLQRREETLKAK 90 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555544444433
No 59
>PF06400 Alpha-2-MRAP_N: Alpha-2-macroglobulin RAP, N-terminal domain; InterPro: IPR009066 The alpha-2-macroglobulin receptor-associated protein (RAP) is a glycoprotein that binds to the alpha-2-macroglobulin receptor, as well as to other members of the low density lipoprotein receptor family (IPR002172 from INTERPRO). RAP acts to inhibit the binding of all know ligands for these receptors, and may prevent receptor aggregation and degradation in the endoplasmic reticulum, thereby acting as a molecular chaperone []. RAP may be under the regulatory control of calmodulin, since it is able to bind calmodulin and be phosphorylated by calmodulin-dependent kinase II (IPR002048 from INTERPRO). RAP is comprised of three domains. Both domains 1 and 3 are involved in binding to the alpha-2-macroglobulin receptor, while domain 1 is also involved in inhibiting the binding of activated alpha-2-macroglobulin (IPR001599 from INTERPRO). Structural studies have revealed the RAP domain 1 to be comprised of a partly opened bundle of three helices, the first one being shorter than the other two.; PDB: 1NRE_A 2P03_A 1OV2_A 1LRE_A 2FYL_A 1OP1_A 2P01_A.
Probab=23.11 E-value=1.7e+02 Score=26.11 Aligned_cols=59 Identities=22% Similarity=0.287 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHh----hccCCCCCCchhhhHHhhhhhHHHHhhhccccchhHh
Q 036026 362 KIKLSSVQLARKYMKRVST---ELE----AMSRPEKEPNREFLLLQGVRFAFRVHQFAGGFDAESM 420 (442)
Q Consensus 362 ~ik~~sv~la~~~m~rv~~---el~----~~~~~~~~~~~~~ll~~~~~fa~rv~~fagg~d~~~~ 420 (442)
+++++.++|+.-|++.-.- |+. +.+|.+++...|.-|-+-|----.-|-.+|+.|.+..
T Consensus 54 r~~Ls~~kLk~L~~dLKi~dkeEl~wKklk~~g~D~dG~kEa~Lrrkl~~Im~kYgL~g~~D~~~~ 119 (120)
T PF06400_consen 54 RLRLSEVKLKSLYSDLKIHDKEELAWKKLKAEGKDKDGEKEAELRRKLNVIMSKYGLDGKKDTEKV 119 (120)
T ss_dssp HHT--HHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SSSHHHHHHHHHHHHHHHHHTSSSSSSS--S
T ss_pred HccCChHHHHHHHHHHHHhHHHHHHHHHHhhhCCCccccHHHHHHHHHHHHHHHhCCCCCcccccc
Confidence 3667888888888775432 232 1357788777778788888878888999999998753
No 60
>CHL00173 cpeA phycoerythrin alpha subunit; Provisional
Probab=23.10 E-value=6.2e+02 Score=23.63 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=11.5
Q ss_pred hhhhcCCCccccc
Q 036026 343 RYREFGIPVDWLL 355 (442)
Q Consensus 343 ~~~~~~ip~~~~l 355 (442)
-|+.+|+|++||.
T Consensus 116 ~Y~sLgVP~~~~v 128 (164)
T CHL00173 116 VYRTLNLPTSAYV 128 (164)
T ss_pred HHHHhCCCHHHHH
Confidence 4999999999985
No 61
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=22.68 E-value=2.2e+02 Score=31.97 Aligned_cols=74 Identities=28% Similarity=0.399 Sum_probs=36.4
Q ss_pred hHHHHHHHHhhhhhhh-hchhhhhhhhccCCChhhHHHHHHHHhh--hhHHHHHHHhhccccCCCCCchHHHHHHHHHHH
Q 036026 247 VEDLVVFVNWLDEELS-FLVDERAVLKHFDWPEGKADALREAAFE--YQDLVKLEKQVSSFVDDPGLPCESALKKMYKLL 323 (442)
Q Consensus 247 iedl~~Fv~wld~eL~-~L~de~~vLK~F~~pe~kl~aLre~~~~--Y~~L~~l~~~l~~~~~~~~~~~~~~lkKm~~ll 323 (442)
|-++.+.++.=+.+|. +|.|=+.+=|....-..+++--....++ |++-.+ |...+|.|.+|
T Consensus 493 IlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKk----------------De~~rkaYK~L 556 (594)
T PF05667_consen 493 ILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAKK----------------DEAARKAYKLL 556 (594)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc----------------CHHHHHHHHHH
Confidence 5555555555555555 4555555555444333333332222222 333221 34566777777
Q ss_pred HHHHHHHHHHHhc
Q 036026 324 EKVEQSVYALLRT 336 (442)
Q Consensus 324 ~K~e~sv~~l~Rt 336 (442)
-.|-..-..|+.+
T Consensus 557 a~lh~~c~~Li~~ 569 (594)
T PF05667_consen 557 ASLHENCSQLIET 569 (594)
T ss_pred HHHHHHHHHHHHH
Confidence 6665555555444
No 62
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=22.57 E-value=5.7e+02 Score=31.36 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=18.3
Q ss_pred hhccccch--hHhHHHHHHHHhhhh
Q 036026 410 QFAGGFDA--ESMKAFEVLRSRVHK 432 (442)
Q Consensus 410 ~fagg~d~--~~~~~~~el~~~~~~ 432 (442)
--.|+|++ +--+++.|||.++.+
T Consensus 1341 k~k~~f~~~~~n~~~L~el~~~l~s 1365 (1758)
T KOG0994|consen 1341 KQKGDFGGLAENSRLLVELRAELSS 1365 (1758)
T ss_pred HhhhcccccccccHHHHHHHHHhcC
Confidence 34577777 778999999998876
No 63
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=21.79 E-value=2.2e+02 Score=30.47 Aligned_cols=14 Identities=0% Similarity=0.012 Sum_probs=5.7
Q ss_pred hhhcccccccccCC
Q 036026 84 SQTISKMKFSQIEK 97 (442)
Q Consensus 84 ~~~~~~~~~~~~~~ 97 (442)
+-++.....+++++
T Consensus 458 ~l~m~~~~~a~~~~ 471 (563)
T KOG1785|consen 458 YLSMCSQSLAHDAS 471 (563)
T ss_pred HHHHHHHHhhhhcc
Confidence 33344433444444
No 64
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=21.70 E-value=2.2e+02 Score=31.56 Aligned_cols=9 Identities=11% Similarity=0.180 Sum_probs=4.0
Q ss_pred hhhhhhhcC
Q 036026 57 PKLALLKEK 65 (442)
Q Consensus 57 pkl~~~~~~ 65 (442)
.+|..|..+
T Consensus 224 tElKeii~n 232 (574)
T PF07462_consen 224 TELKEIIKN 232 (574)
T ss_pred HHHHHHHhc
Confidence 344454333
No 65
>TIGR03582 EF_0829 PRD domain protein EF_0829/AHA_3910. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. This protein contains a PRD domain (see pfam00874). The function is unknown.
Probab=21.62 E-value=1.3e+02 Score=26.22 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=37.1
Q ss_pred chHHHhhhhhhcCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchhhhHHhhhhh
Q 036026 336 TRDMAISRYREFGIPVDWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFLLLQGVRF 404 (442)
Q Consensus 336 trd~~~~~~~~~~ip~~~~ld~~~~~~ik~~sv~la~~~m~rv~~el~~~~~~~~~~~~~~ll~~~~~f 404 (442)
.+.++++.+++-.||= +|.-|.-.|+..|++|+...+.. +.. -+..|..|| +|||
T Consensus 47 laaml~Rs~~GE~lp~---vD~~Lf~EIs~~sl~la~~v~~~----f~~------L~~~E~~ll-svhf 101 (107)
T TIGR03582 47 LNAMVYRSTTGETLPE---VDRSLFDEISKESIKLAEEVVAA----LGN------LAEDEAYLL-SVHF 101 (107)
T ss_pred HHHHHHHHHcCCcCCc---cCHHHHHHHHHHHHHHHHHHHHH----hcC------CChhhHHHH-HHhh
Confidence 3455556677777774 67789999999999999766643 221 133355666 8888
No 66
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=21.28 E-value=2e+02 Score=27.45 Aligned_cols=54 Identities=19% Similarity=0.381 Sum_probs=36.7
Q ss_pred cchhhHHHHHHHHHHHHHHH-HHHHHHhhccCCCCCCchhhhHHhhhhhHH--HHhhhcccc
Q 036026 357 TGVVGKIKLSSVQLARKYMK-RVSTELEAMSRPEKEPNREFLLLQGVRFAF--RVHQFAGGF 415 (442)
Q Consensus 357 ~~~~~~ik~~sv~la~~~m~-rv~~el~~~~~~~~~~~~~~ll~~~~~fa~--rv~~fagg~ 415 (442)
+|..++|+.+|..|+..+-. +++.|++..-+..+ ...++ |.-|.| =.+.+-|||
T Consensus 2 ~~~l~~is~aM~~l~~t~~~~piL~~ie~~~~~~k----~Y~~~-~asf~~l~~lfs~vlG~ 58 (186)
T COG5052 2 SGQLVNISVAMLVLDNTLQAFPILREIENLYNRYK----KYFMA-GASFLYLLNLFSTVLGF 58 (186)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCcch----hhHHH-HHHHHHHHHHHHHhhhH
Confidence 37789999999999998876 78889987654322 23333 555544 445566777
No 67
>PF08990 Docking: Erythronolide synthase docking; InterPro: IPR015083 The N-terminal docking domain found in modular polyketide synthase assumes an alpha-helical structure, wherein two alpha-helices are connected by a short loop. Two such N-terminal domains dimerise to form amphipathic parallel alpha-helical coiled coils: dimerisation is essential for protein function []. ; GO: 0016740 transferase activity, 0048037 cofactor binding; PDB: 2HG4_E.
Probab=20.96 E-value=85 Score=20.70 Aligned_cols=14 Identities=50% Similarity=0.854 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhhc
Q 036026 372 RKYMKRVSTELEAM 385 (442)
Q Consensus 372 ~~~m~rv~~el~~~ 385 (442)
+.|+|||+.||+..
T Consensus 8 r~YLkr~t~eL~~~ 21 (27)
T PF08990_consen 8 RDYLKRVTAELRRA 21 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 58999999999753
No 68
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=20.72 E-value=4.4e+02 Score=20.93 Aligned_cols=43 Identities=28% Similarity=0.499 Sum_probs=24.0
Q ss_pred HHHHH-HhhhhHHHHHHHhhccccCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 036026 283 ALREA-AFEYQDLVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYAL 333 (442)
Q Consensus 283 aLre~-~~~Y~~L~~l~~~l~~~~~~~~~~~~~~lkKm~~ll~K~e~sv~~l 333 (442)
.||.. ...|++|-....+|..++ .-+..+..++..+...+..+
T Consensus 41 eLr~~V~~nY~~fI~as~~I~~m~--------~~~~~l~~~l~~l~~~~~~l 84 (87)
T PF08700_consen 41 ELRKLVYENYRDFIEASDEISSME--------NDLSELRNLLSELQQSIQSL 84 (87)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHh
Confidence 44443 345888888877777773 23344455555544444443
No 69
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=20.35 E-value=3e+02 Score=33.80 Aligned_cols=8 Identities=13% Similarity=0.484 Sum_probs=3.5
Q ss_pred CCCCccch
Q 036026 13 YPAYKDRH 20 (442)
Q Consensus 13 ~P~f~~r~ 20 (442)
-|.|..+.
T Consensus 1802 sp~~~~~r 1809 (1958)
T KOG0391|consen 1802 SPTFQSIR 1809 (1958)
T ss_pred CCCCcccc
Confidence 34444443
No 70
>PF00502 Phycobilisome: Phycobilisome protein; InterPro: IPR012128 Cyanobacteria and red algae harvest light through water-soluble complexes, called phycobilisomes, which are attached to the outer face of the thylakoid membrane []. These complexes are capable of transferring the absorbed energy to the photosynthetic reaction centre with greater than 95% efficiency. Phycobilisomes contain various photosynthetic light harvesting proteins known as biliproteins, and linker proteins which help assemble the structure. The two main structural elements of the complex are a core located near the photosynthetic reaction centre, and rods attached to this core. Allophycocyanin is the major component of the core, while the rods contain phycocyanins, phycoerythrins and linker proteins. The rod biliproteins harvest photons, with the excitation energy being passed through the rods into the allophycocyanin in the core. Other core biliproteins subsequently pass this energy to chlorophyll within the thylakoid membrane. This entry represents the alpha and beta subunits found in biliproteins from cyanobacteria and red algae. Structural studies indicate that the basic structural unit of most biliproteins is a heterodimer composed of these alpha and beta subunits [, , , ]. The full protein is a ring-like trimer assembly of these heterodimers. Each subunit of the heterodimer has eight helices and binds chromophores through thioester bonds formed at particular cysteine residues. These chromophores, also known as bilins, are open-chain tetrapyrroles whose number and type vary with the particular biliprotein eg R-phyocerythrin binds five phycoerythrobilins per heterodimer, while allophycocyanin binds two phycocyanobilins per heterodimer.; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2VML_I 2VJR_A 1KTP_B 3L0F_B 1JBO_B 3KVS_B 1PHN_B 3BRP_B 2C7K_B 2C7L_B ....
Probab=20.28 E-value=6.6e+02 Score=22.86 Aligned_cols=13 Identities=38% Similarity=0.907 Sum_probs=7.9
Q ss_pred hhhhcCCCccccc
Q 036026 343 RYREFGIPVDWLL 355 (442)
Q Consensus 343 ~~~~~~ip~~~~l 355 (442)
-|+.+|+|.+||.
T Consensus 111 i~~al~vp~~~~v 123 (157)
T PF00502_consen 111 IYRALGVPIDAYV 123 (157)
T ss_dssp HHHHHT--HHHHH
T ss_pred HHHHHcCCchHHH
Confidence 3778888888764
Done!