Query 036026
Match_columns 442
No_of_seqs 373 out of 646
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 14:35:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036026.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036026hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p8c_D Wiskott-aldrich syndrom 78.5 0.89 3.1E-05 44.4 2.3 57 200-258 214-279 (279)
2 2bnx_A Diaphanous protein homo 74.7 0.39 1.3E-05 48.8 -1.5 35 10-45 307-341 (386)
3 1v9d_A Diaphanous protein homo 29.5 41 0.0014 33.1 4.1 61 247-308 31-91 (340)
4 3r1f_A ESX-1 secretion-associa 28.7 2.2E+02 0.0074 24.0 8.1 26 403-432 104-129 (135)
5 2h8h_A Proto-oncogene tyrosine 26.4 12 0.0004 38.8 -0.6 13 242-254 220-232 (535)
6 1deq_A Fibrinogen (alpha chain 24.0 1E+02 0.0035 31.2 5.7 36 281-317 136-173 (390)
7 3obv_E Protein diaphanous homo 21.1 59 0.002 33.5 3.5 62 246-308 101-162 (457)
8 2avr_X Adhesion A; antiparalle 20.9 2.3E+02 0.0078 24.0 6.5 57 283-339 42-100 (119)
9 2j1d_G DAAM1, disheveled-assoc 20.1 80 0.0027 32.6 4.3 62 246-308 111-173 (483)
10 2lqu_A Decorin-binding protein 19.4 2.9E+02 0.01 24.5 7.0 57 325-381 11-76 (168)
No 1
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=78.49 E-value=0.89 Score=44.40 Aligned_cols=57 Identities=33% Similarity=0.508 Sum_probs=30.2
Q ss_pred Chhhhhhhhhhhhccchhhhhhhhcccc-------cccccchhhHhhhhccccchHHHHHH--HHhhh
Q 036026 200 TSDARSNMIGEIENKSSFLLAVKADVET-------QGDFVQSLAAEVRAASFTTVEDLVVF--VNWLD 258 (442)
Q Consensus 200 ~sd~rs~li~eIenrS~~Llaik~dve~-------q~dfI~~L~~eIraa~f~diedl~~F--v~wld 258 (442)
..++|+.++.+|+ ++..|.+|+.+... ..++.+.|++++ +..|+|.++...| .+|++
T Consensus 214 ~~~~rs~Ll~air-~g~~l~kve~~~~~~~~~~~~~~~va~Il~rr~-a~~~s~~~~~s~~d~~~w~e 279 (279)
T 3p8c_D 214 ISDARSVLLEAIR-KGIQLRKVEEQREQEAKHERIENDVATILSRRI-AVEYSDSEDDSEFDEVDWLE 279 (279)
T ss_dssp ---CSCHHHHHHH-HHHHHHHTSSCCC---------CCHHHHHHHHH-HTTTC---------------
T ss_pred ccchHHHHHHHHH-hcCcccccchhhhhhhhhccccccHHHHHHHHH-HHhhccccCccccccccccC
Confidence 5678999999997 67777777653322 227788889888 7788988876666 47753
No 2
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=74.72 E-value=0.39 Score=48.79 Aligned_cols=35 Identities=17% Similarity=0.344 Sum_probs=25.6
Q ss_pred cccCCCCccchhhhhhHHHHHHHHHHHHHHhhhccC
Q 036026 10 AEKYPAYKDRHKLALEREKQIKEKAEKARAYRFRDN 45 (442)
Q Consensus 10 ~~~~P~f~~r~~l~~d~~~~i~~~~~k~~~~~~~~~ 45 (442)
.|.||||+++ +|.++++++||.+++++++++.+..
T Consensus 307 ~~~Dpd~~~~-~l~~~v~~l~d~l~~~~~~~~~~~~ 341 (386)
T 2bnx_A 307 NGTDPDFKCR-HLQIDIERLVDQMIDKTKVEKSEAK 341 (386)
T ss_dssp GGCCCCTTCS-CCCCCCTTTC-----CTHHHHHHTT
T ss_pred CCCCCCcccc-cccchHHHHHHHHhhhhHHHHHHHH
Confidence 4789999998 7999999999999999988776553
No 3
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=29.55 E-value=41 Score=33.07 Aligned_cols=61 Identities=20% Similarity=0.188 Sum_probs=35.5
Q ss_pred hHHHHHHHHhhhhhhhhchhhhhhhhccCCChhhHHHHHHHHhhhhHHHHHHHhhccccCCC
Q 036026 247 VEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLVKLEKQVSSFVDDP 308 (442)
Q Consensus 247 iedl~~Fv~wld~eL~~L~de~~vLK~F~~pe~kl~aLre~~~~Y~~L~~l~~~l~~~~~~~ 308 (442)
.+++..-+..+|...-....-..+++.+|.++ +++.|++...++.+|...++++-.+..-|
T Consensus 31 ~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~e-E~~~l~~~~~~~~~L~~~EqF~~~l~~ip 91 (340)
T 1v9d_A 31 YQEIKNVILEVNEAVLTESMIQNLIKQMPEPE-QLKMLSELKEEYDDLAESEQFGVVMGTVP 91 (340)
T ss_dssp HHHHHHHHHHTCTTTCCHHHHHHHHHHSCCHH-HHHHHHTCGGGGGGSCHHHHHHHHHHTST
T ss_pred HHHHHHHHHhCCcccCCHHHHHHHHccCCCHH-HHHHHHHhhCChhhcCHHHHHHHHHHCCC
Confidence 34444445455543222222235677777664 47788887777888888887665554434
No 4
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=28.67 E-value=2.2e+02 Score=23.96 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=18.1
Q ss_pred hhHHHHhhhccccchhHhHHHHHHHHhhhh
Q 036026 403 RFAFRVHQFAGGFDAESMKAFEVLRSRVHK 432 (442)
Q Consensus 403 ~fa~rv~~fagg~d~~~~~~~~el~~~~~~ 432 (442)
++|||. .|++++.++.+.++-+.+..
T Consensus 104 ~l~~r~----~~Ls~e~~~~l~~ii~~l~~ 129 (135)
T 3r1f_A 104 RIAQRA----HGLPSAAQQKVLDRIDELRR 129 (135)
T ss_dssp HHHHHH----TSCCHHHHHHHHHHHHHHC-
T ss_pred HHHHHH----cCCCHHHHHHHHHHHHHHHH
Confidence 456674 47999998887777666544
No 5
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=26.39 E-value=12 Score=38.81 Aligned_cols=13 Identities=23% Similarity=0.659 Sum_probs=8.9
Q ss_pred ccccchHHHHHHH
Q 036026 242 ASFTTVEDLVVFV 254 (442)
Q Consensus 242 a~f~diedl~~Fv 254 (442)
..|.++.++..+.
T Consensus 220 ~~F~SL~eLv~~y 232 (535)
T 2h8h_A 220 TQFNSLQQLVAYY 232 (535)
T ss_dssp EEESSHHHHHHHH
T ss_pred ccccChHHhheee
Confidence 3577788887664
No 6
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.96 E-value=1e+02 Score=31.20 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=22.1
Q ss_pred HHHHHHH-HhhhhHHHHHHHhhccccCCC-CCchHHHHH
Q 036026 281 ADALREA-AFEYQDLVKLEKQVSSFVDDP-GLPCESALK 317 (442)
Q Consensus 281 l~aLre~-~~~Y~~L~~l~~~l~~~~~~~-~~~~~~~lk 317 (442)
|..|+.. ...+.++.+||..| .++..+ +..|..++.
T Consensus 136 ir~Lq~~l~~q~~kiqRLE~~I-d~c~~~C~~sC~~~l~ 173 (390)
T 1deq_A 136 INLLQKNVRDQLVDMKRLEVDI-DIKIRSCKGSCSRALE 173 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhcccccccchhhh
Confidence 4444332 33467777888888 555555 667777666
No 7
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=21.11 E-value=59 Score=33.48 Aligned_cols=62 Identities=19% Similarity=0.173 Sum_probs=42.0
Q ss_pred chHHHHHHHHhhhhhhhhchhhhhhhhccCCChhhHHHHHHHHhhhhHHHHHHHhhccccCCC
Q 036026 246 TVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLVKLEKQVSSFVDDP 308 (442)
Q Consensus 246 diedl~~Fv~wld~eL~~L~de~~vLK~F~~pe~kl~aLre~~~~Y~~L~~l~~~l~~~~~~~ 308 (442)
+.+++..-+..+|...-....-..+++.+|.+++ ++.|++...++.+|...++++-.+..-|
T Consensus 101 ~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE-~~~l~~~~~d~~~L~~~EqF~~~l~~Ip 162 (457)
T 3obv_E 101 PYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQ-LKMLSELKEEYDDLAESEQFGVVMGTVP 162 (457)
T ss_dssp CHHHHHHHHHHTCTTTCCHHHHHHHHHHCCCHHH-HHHHHTTTTSGGGSCHHHHHHHHHTSST
T ss_pred CHHHHHHHHHhCCcccCCHHHHHHHHHhCCCHHH-HHHHHHhccChhhcCHHHHHHHHHHccc
Confidence 4567776676677543333334477888876644 8888888888888888888766654444
No 8
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=20.91 E-value=2.3e+02 Score=24.01 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=34.6
Q ss_pred HHHHHHhhhhHHHHHHHhhccccCCC--CCchHHHHHHHHHHHHHHHHHHHHHHhchHH
Q 036026 283 ALREAAFEYQDLVKLEKQVSSFVDDP--GLPCESALKKMYKLLEKVEQSVYALLRTRDM 339 (442)
Q Consensus 283 aLre~~~~Y~~L~~l~~~l~~~~~~~--~~~~~~~lkKm~~ll~K~e~sv~~l~Rtrd~ 339 (442)
.|.+-...|..+.+...+|..-.+.- +......+++-..++.+|+.+|.....+.|.
T Consensus 42 ~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk~~~~~Ld~eI~~qe~iI~n 100 (119)
T 2avr_X 42 ALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISD 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445666666666554432111 2245677888888888888888777776653
No 9
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=20.06 E-value=80 Score=32.61 Aligned_cols=62 Identities=16% Similarity=0.070 Sum_probs=38.4
Q ss_pred chHHHHHHHHhhhh-hhhhchhhhhhhhccCCChhhHHHHHHHHhhhhHHHHHHHhhccccCCC
Q 036026 246 TVEDLVVFVNWLDE-ELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLVKLEKQVSSFVDDP 308 (442)
Q Consensus 246 diedl~~Fv~wld~-eL~~L~de~~vLK~F~~pe~kl~aLre~~~~Y~~L~~l~~~l~~~~~~~ 308 (442)
+.+++...+..+|. ..-....-..+++.+|.++ +++.|++...++..|...++++-.+..-|
T Consensus 111 ~~~ei~~aIl~~D~~~~L~~e~l~~Ll~~~Pt~e-E~~~l~~~~~d~~~L~~aEqFl~~l~~ip 173 (483)
T 2j1d_G 111 SNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKS-DIDLLEEHKHELDRMAKADRFLFEMSRIN 173 (483)
T ss_dssp CHHHHHHHHHTTSTTCCCCHHHHHHHHHSCCCHH-HHHHHHTTTTCGGGBCHHHHHHHHHHTST
T ss_pred CHHHHHHHHHccCccccCCHHHHHHHHHhCCCHH-HHHHHHHhccChhhcCHHHHHHHHHhCCc
Confidence 45677766777775 3222222347788877664 47888887777777777777655443333
No 10
>2lqu_A Decorin-binding protein A; GAG-binding protein, helical bundle protein, LYME disease, B adhesin, cell adhesion; NMR {Borrelia burgdorferi}
Probab=19.43 E-value=2.9e+02 Score=24.52 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhchHHHhhhhhhcCCCccccccc---------chhhHHHHHHHHHHHHHHHHHHHH
Q 036026 325 KVEQSVYALLRTRDMAISRYREFGIPVDWLLDT---------GVVGKIKLSSVQLARKYMKRVSTE 381 (442)
Q Consensus 325 K~e~sv~~l~Rtrd~~~~~~~~~~ip~~~~ld~---------~~~~~ik~~sv~la~~~m~rv~~e 381 (442)
+||.|+..+-.-.+-+.+--+.-|+.|+-+-|+ +.|.+-|.-..+++-+|++.+-.|
T Consensus 11 ~LESSakdI~deI~kikkeA~~~GVnf~AFt~~~TGsKV~~~~fireAKirai~~~eKFlkaieEE 76 (168)
T 2lqu_A 11 RLERSAKDITDEIDAIKKDAALKGVNFDAFKDKKTGSGVSENPFILEAKVRATTVAEKFVIAIEEE 76 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCCCCCSSCCCSTTSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHcCCCHHHhccCccccCcCCchHHHHHHHHHHHHHHHHHHHHHHH
Done!