Query 036026
Match_columns 442
No_of_seqs 373 out of 646
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 14:35:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036026.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036026hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ou5a1 a.173.1.1 (A:151-354) 49.5 2.7 0.00019 36.4 1.4 35 398-432 19-53 (204)
2 d1v9da_ a.207.1.1 (A:) Diaphan 32.2 16 0.0012 33.3 4.1 61 247-308 26-86 (332)
3 d1miwa1 a.173.1.1 (A:140-404) 30.8 12 0.00084 32.1 2.6 31 398-431 19-49 (265)
4 d1jbob_ a.1.1.3 (B:) Phycocyan 21.4 29 0.0021 29.1 3.3 25 343-369 116-140 (172)
5 d1xfia_ e.50.1.1 (A:) Hypothet 20.6 1.3E+02 0.0098 27.7 8.3 44 333-386 98-141 (360)
6 d1q08a_ a.6.1.3 (A:) Transcrip 19.2 88 0.0064 22.9 5.5 32 310-341 35-66 (94)
7 d1alla_ a.1.1.3 (A:) Allophyco 14.3 2.8E+02 0.021 22.0 9.8 13 343-355 114-126 (160)
8 d1allb_ a.1.1.3 (B:) Allophyco 13.4 53 0.0039 27.0 3.0 26 343-370 115-140 (161)
9 d2bgxa1 a.20.1.1 (A:180-260) P 13.3 66 0.0048 23.5 3.2 34 396-429 45-78 (81)
10 d1lvfa_ a.47.2.1 (A:) Syntaxin 12.8 2E+02 0.015 21.3 6.2 39 312-350 40-78 (106)
No 1
>d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal domains {Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Probab=49.48 E-value=2.7 Score=36.38 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=28.5
Q ss_pred HHhhhhhHHHHhhhccccchhHhHHHHHHHHhhhh
Q 036026 398 LLQGVRFAFRVHQFAGGFDAESMKAFEVLRSRVHK 432 (442)
Q Consensus 398 l~~~~~fa~rv~~fagg~d~~~~~~~~el~~~~~~ 432 (442)
++++||||-|.....+.+|.+|.+++.+.+..+..
T Consensus 19 ILR~~RF~~~~~~~~f~id~~t~~ai~~~~~~L~~ 53 (204)
T d1ou5a1 19 ILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAG 53 (204)
T ss_dssp HHHHHHHHHHSCSSSSCCCHHHHHHHHHSCTTGGG
T ss_pred HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHhcc
Confidence 89999999887766678999999999886655543
No 2
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.18 E-value=16 Score=33.30 Aligned_cols=61 Identities=20% Similarity=0.175 Sum_probs=35.7
Q ss_pred hHHHHHHHHhhhhhhhhchhhhhhhhccCCChhhHHHHHHHHhhhhHHHHHHHhhccccCCC
Q 036026 247 VEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLVKLEKQVSSFVDDP 308 (442)
Q Consensus 247 iedl~~Fv~wld~eL~~L~de~~vLK~F~~pe~kl~aLre~~~~Y~~L~~l~~~l~~~~~~~ 308 (442)
.+++...+..+|...-....-+.+++.+|.+++ ++.|++...+...|...++++-.+..-|
T Consensus 26 ~~~i~~ai~~~D~~~l~~e~l~~L~~~~Pt~eE-~~~l~~~~~~~~~L~~~E~f~~~l~~ip 86 (332)
T d1v9da_ 26 YQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQ-LKMLSELKEEYDDLAESEQFGVVMGTVP 86 (332)
T ss_dssp HHHHHHHHHHTCTTTCCHHHHHHHHHHSCCHHH-HHHHHTCGGGGGGSCHHHHHHHHHHTST
T ss_pred HHHHHHHHHhCCcccCCHHHHHHHHHhCcCHHH-HHHHHHhcCChhhcChHHHHHHHHhccc
Confidence 344544455555443333334567777776644 7778777667777777777655554434
No 3
>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal domains {Bacillus stearothermophilus [TaxId: 1422]}
Probab=30.83 E-value=12 Score=32.09 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=24.1
Q ss_pred HHhhhhhHHHHhhhccccchhHhHHHHHHHHhhh
Q 036026 398 LLQGVRFAFRVHQFAGGFDAESMKAFEVLRSRVH 431 (442)
Q Consensus 398 l~~~~~fa~rv~~fagg~d~~~~~~~~el~~~~~ 431 (442)
++||||||=|. .| -+|.+|.+|..+....+.
T Consensus 19 iLRa~RFa~rl-~f--~i~~~t~~ai~~~~~~l~ 49 (265)
T d1miwa1 19 MMRAVRFVSEL-GF--ALAPDTEQAIVQNAPLLA 49 (265)
T ss_dssp HHHHHHHHHHH-CC--EECHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHh-CC--CccHHHHHHHHHHHHHHH
Confidence 89999999885 34 489999998887665554
No 4
>d1jbob_ a.1.1.3 (B:) Phycocyanin beta subunit {Synechococcus elongatus [TaxId: 32046]}
Probab=21.36 E-value=29 Score=29.13 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=16.4
Q ss_pred hhhhcCCCcccccccchhhHHHHHHHH
Q 036026 343 RYREFGIPVDWLLDTGVVGKIKLSSVQ 369 (442)
Q Consensus 343 ~~~~~~ip~~~~ld~~~~~~ik~~sv~ 369 (442)
-|+..|+|+.||. --+..||.+++.
T Consensus 116 ~y~~lgvP~~~~v--~al~~mk~~s~~ 140 (172)
T d1jbob_ 116 TYQALGTPGSSVA--VAIQKMKDAAIA 140 (172)
T ss_dssp HHHHHTCCHHHHH--HHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHH--HHHHHHHHHHHH
Confidence 4999999999974 123445555543
No 5
>d1xfia_ e.50.1.1 (A:) Hypothetical protein At2g17340 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=20.58 E-value=1.3e+02 Score=27.68 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=34.4
Q ss_pred HHhchHHHhhhhhhcCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 036026 333 LLRTRDMAISRYREFGIPVDWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAMS 386 (442)
Q Consensus 333 l~Rtrd~~~~~~~~~~ip~~~~ld~~~~~~ik~~sv~la~~~m~rv~~el~~~~ 386 (442)
|.++|+.. +++||++ ....++|..+-..|..+...+..|+++..
T Consensus 98 l~~~re~~---Lr~~Gf~-------DpY~~~K~~eN~~Al~~lp~~~~~id~i~ 141 (360)
T d1xfia_ 98 LCRLREQV---LRELGFR-------DIFKKVKDEENAKAISLFPQVVSLSDAIE 141 (360)
T ss_dssp HHHHHHHH---HHHTTCS-------CTTHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHH---HHHcCCC-------CccHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33677654 4556776 45588999999999999999999998764
No 6
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=19.20 E-value=88 Score=22.90 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=25.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Q 036026 310 LPCESALKKMYKLLEKVEQSVYALLRTRDMAI 341 (442)
Q Consensus 310 ~~~~~~lkKm~~ll~K~e~sv~~l~Rtrd~~~ 341 (442)
.+|..+..-+..-+..++..|..|.++|+.+.
T Consensus 35 ~~c~~v~~l~~~kl~~i~~kI~~L~~l~~~L~ 66 (94)
T d1q08a_ 35 HTCQESKGIVQERLQEVEARIAELQSMQRSLQ 66 (94)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46887777777788888888888988888764
No 7
>d1alla_ a.1.1.3 (A:) Allophycocyanin alpha subunit {Spirulina platensis [TaxId: 118562]}
Probab=14.27 E-value=2.8e+02 Score=22.03 Aligned_cols=13 Identities=23% Similarity=0.728 Sum_probs=10.4
Q ss_pred hhhhcCCCccccc
Q 036026 343 RYREFGIPVDWLL 355 (442)
Q Consensus 343 ~~~~~~ip~~~~l 355 (442)
-|+.+|+|++||.
T Consensus 114 ~y~al~vp~~~~v 126 (160)
T d1alla_ 114 MYKSLGTPIEAIA 126 (160)
T ss_dssp HHHHHTCCHHHHH
T ss_pred HHHHhCCCHHHHH
Confidence 3888999998863
No 8
>d1allb_ a.1.1.3 (B:) Allophycocyanin beta subunit {Spirulina platensis [TaxId: 118562]}
Probab=13.36 E-value=53 Score=26.96 Aligned_cols=26 Identities=19% Similarity=0.471 Sum_probs=17.1
Q ss_pred hhhhcCCCcccccccchhhHHHHHHHHH
Q 036026 343 RYREFGIPVDWLLDTGVVGKIKLSSVQL 370 (442)
Q Consensus 343 ~~~~~~ip~~~~ld~~~~~~ik~~sv~l 370 (442)
-|+.+|+|++||.. -+..||.++..+
T Consensus 115 ~y~~L~vp~~~~i~--al~~mk~~~~~~ 140 (161)
T d1allb_ 115 TYNSLGVPIGATVQ--AIQAMKEVTAGL 140 (161)
T ss_dssp HHHHHTCCHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHH--HHHHHHHHHHHH
Confidence 49999999999752 234455554444
No 9
>d2bgxa1 a.20.1.1 (A:180-260) Probable N-acetylmuramoyl-L-alanine amidase YbjR, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.32 E-value=66 Score=23.45 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=29.4
Q ss_pred hhHHhhhhhHHHHhhhccccchhHhHHHHHHHHh
Q 036026 396 FLLLQGVRFAFRVHQFAGGFDAESMKAFEVLRSR 429 (442)
Q Consensus 396 ~ll~~~~~fa~rv~~fagg~d~~~~~~~~el~~~ 429 (442)
+.++.+||--||=-...|-.|.||.....-|-+.
T Consensus 45 k~vi~AFQrhFRp~~i~G~~D~Et~~Il~~L~~K 78 (81)
T d2bgxa1 45 RRVIMAFQMHFRPTLYNGEADAETQAIAEALLEK 78 (81)
T ss_dssp HHHHHHHHHHHCTTCCSSCCBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccccCCcCCHHHHHHHHHHHHH
Confidence 5678899999999999999999999888777543
No 10
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=12.80 E-value=2e+02 Score=21.28 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhchHHHhhhhhhcCCC
Q 036026 312 CESALKKMYKLLEKVEQSVYALLRTRDMAISRYREFGIP 350 (442)
Q Consensus 312 ~~~~lkKm~~ll~K~e~sv~~l~Rtrd~~~~~~~~~~ip 350 (442)
+..+.+-+..-+.-++-.+.-|+++...+.+....|||.
T Consensus 40 ~~~~~~eL~~~l~siewdL~dLe~av~~ve~np~kf~l~ 78 (106)
T d1lvfa_ 40 IDWTTNELRNNLRSIEWDLEDLDETISIVEANPRKFNLD 78 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGGTCC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCHHhcCCC
Confidence 344556677777777777888888888877766667764
Done!