BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036028
(193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VJI|A Chain A, Gene Product Of At1g76680 From Arabidopsis Thaliana
pdb|2Q3R|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
At1g76680 From Arabidopsis Thaliana
Length = 372
Score = 183 bits (464), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 93/151 (61%), Positives = 105/151 (69%), Gaps = 5/151 (3%)
Query: 3 KRTTNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG 62
+RTT GGFLI EATGV DT QGY +TPGIWTKE VEAWKPIVDAVH KGG FFCQ+WHVG
Sbjct: 52 QRTTPGGFLITEATGVSDTAQGYQDTPGIWTKEHVEAWKPIVDAVHAKGGIFFCQIWHVG 111
Query: 63 RVSTFGLQPNGKAPISSTNKGVTP-----GLDGQDWSSPRPLRTEEIPQIVNDFRLAARN 117
RVS G QPNGKAPIS ++K + P G+D ++ PR L EEIP IVNDFRLAARN
Sbjct: 112 RVSNSGFQPNGKAPISCSDKPLMPQIRSNGIDEALFTPPRRLGIEEIPGIVNDFRLAARN 171
Query: 118 AIEAGDSNSDFSNLNYMLIFSIKSDVEGRRS 148
A+EAG + N LI D R+
Sbjct: 172 AMEAGFDGVEIHGANGYLIDQFMKDTVNDRT 202
>pdb|1ICP|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With Peg400
pdb|1ICP|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With Peg400
pdb|1ICQ|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With 9r,13r-Opda
pdb|1ICQ|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With 9r,13r-Opda
pdb|1ICS|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato
pdb|1ICS|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato
pdb|3HGR|A Chain A, Crystal Structure Of Tomato Opr1 In Complex With Phb
pdb|3HGR|B Chain B, Crystal Structure Of Tomato Opr1 In Complex With Phb
Length = 376
Score = 173 bits (439), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 88/153 (57%), Positives = 106/153 (69%), Gaps = 5/153 (3%)
Query: 3 KRTTNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG 62
+R+TNGG LI EAT + +T GY + PGIWTKEQVEAWKPIVDAVH KGG FFCQ+WHVG
Sbjct: 56 QRSTNGGLLIGEATVISETGIGYKDVPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVG 115
Query: 63 RVSTFGLQPNGKAPISSTNKGVTP-----GLDGQDWSSPRPLRTEEIPQIVNDFRLAARN 117
RVS QPNG+ PIS T++G+TP G+D ++ PR L T+EIPQIVN+FR+AARN
Sbjct: 116 RVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEFRVAARN 175
Query: 118 AIEAGDSNSDFSNLNYMLIFSIKSDVEGRRSYK 150
AIEAG + + LI D RS K
Sbjct: 176 AIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDK 208
>pdb|1Q45|A Chain A, 12-0xo-Phytodienoate Reductase Isoform 3
pdb|1Q45|B Chain B, 12-0xo-Phytodienoate Reductase Isoform 3
pdb|2G5W|A Chain A, X-Ray Crystal Structure Of Arabidopsis Thaliana
12-Oxophytodienoate Reductase Isoform 3 (Atopr3) In
Complex With 8-Iso Prostaglandin A1 And Its Cofactor,
Flavin Mononucleotide.
pdb|2G5W|B Chain B, X-Ray Crystal Structure Of Arabidopsis Thaliana
12-Oxophytodienoate Reductase Isoform 3 (Atopr3) In
Complex With 8-Iso Prostaglandin A1 And Its Cofactor,
Flavin Mononucleotide.
pdb|2Q3O|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
12-Oxo- Phytodienoate Reductase Isoform 3
pdb|2Q3O|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
12-Oxo- Phytodienoate Reductase Isoform 3
Length = 391
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 83/128 (64%), Gaps = 8/128 (6%)
Query: 3 KRTTNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG 62
+RTT GGFLI+E T V G+P+ PGI++ EQVEAWK +V+AVH KGG FCQLWHVG
Sbjct: 52 QRTTPGGFLISEGTMVSPGSAGFPHVPGIYSDEQVEAWKQVVEAVHAKGGFIFCQLWHVG 111
Query: 63 RVSTFGLQPNGKAPISSTNKGVT--------PGLDGQDWSSPRPLRTEEIPQIVNDFRLA 114
R S QPNG +PISSTNK ++ P + PR L EIP++V D+ L+
Sbjct: 112 RASHAVYQPNGGSPISSTNKPISENRWRVLLPDGSHVKYPKPRALEASEIPRVVEDYCLS 171
Query: 115 ARNAIEAG 122
A NAI AG
Sbjct: 172 ALNAIRAG 179
>pdb|3HGO|A Chain A, Crystal Structure Of The F74yH244Y OPR3 DOUBLE MUTANT FROM
Tomato
pdb|3HGO|B Chain B, Crystal Structure Of The F74yH244Y OPR3 DOUBLE MUTANT FROM
Tomato
Length = 402
Score = 129 bits (325), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 78/127 (61%), Gaps = 7/127 (5%)
Query: 3 KRTTNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG 62
+R T GGFLI E T + T GYP+ PGI+TKEQV WK IVD VH KG FCQLWHVG
Sbjct: 58 QRATAGGFLITEGTMISPTSAGYPHVPGIFTKEQVREWKKIVDVVHAKGAVIFCQLWHVG 117
Query: 63 RVSTFGLQPNGKAPISSTNKGVT-------PGLDGQDWSSPRPLRTEEIPQIVNDFRLAA 115
R S QP G APISST K ++ P + PR + T EI Q+V D+R +A
Sbjct: 118 RASHEVYQPAGAAPISSTEKPISNRWRILMPDGTHGIYPKPRAIGTYEISQVVEDYRRSA 177
Query: 116 RNAIEAG 122
NAIEAG
Sbjct: 178 LNAIEAG 184
>pdb|2HS6|A Chain A, Crystal Structure Of The E291k Mutant Of 12-
Oxophytodienoate Reductase 3 (Opr3) From Tomato
pdb|2HS6|B Chain B, Crystal Structure Of The E291k Mutant Of 12-
Oxophytodienoate Reductase 3 (Opr3) From Tomato
pdb|2HSA|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 3
(Opr3) From Tomato
pdb|2HSA|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 3
(Opr3) From Tomato
pdb|3HGS|A Chain A, Crystal Structure Of Tomato Opr3 In Complex With Phb
pdb|3HGS|B Chain B, Crystal Structure Of Tomato Opr3 In Complex With Phb
Length = 402
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/127 (51%), Positives = 78/127 (61%), Gaps = 7/127 (5%)
Query: 3 KRTTNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG 62
+R T GGFLI E T + T G+P+ PGI+TKEQV WK IVD VH KG FCQLWHVG
Sbjct: 58 QRATAGGFLITEGTMISPTSAGFPHVPGIFTKEQVREWKKIVDVVHAKGAVIFCQLWHVG 117
Query: 63 RVSTFGLQPNGKAPISSTNKGVT-------PGLDGQDWSSPRPLRTEEIPQIVNDFRLAA 115
R S QP G APISST K ++ P + PR + T EI Q+V D+R +A
Sbjct: 118 RASHEVYQPAGAAPISSTEKPISNRWRILMPDGTHGIYPKPRAIGTYEISQVVEDYRRSA 177
Query: 116 RNAIEAG 122
NAIEAG
Sbjct: 178 LNAIEAG 184
>pdb|2HS8|A Chain A, Crystal Structure Of The Y364f Mutant Of 12-
Oxophytodienoate Reductase 3 From Tomato
pdb|2HS8|B Chain B, Crystal Structure Of The Y364f Mutant Of 12-
Oxophytodienoate Reductase 3 From Tomato
Length = 402
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/127 (51%), Positives = 78/127 (61%), Gaps = 7/127 (5%)
Query: 3 KRTTNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG 62
+R T GGFLI E T + T G+P+ PGI+TKEQV WK IVD VH KG FCQLWHVG
Sbjct: 58 QRATAGGFLITEGTMISPTSAGFPHVPGIFTKEQVREWKKIVDVVHAKGAVIFCQLWHVG 117
Query: 63 RVSTFGLQPNGKAPISSTNKGVT-------PGLDGQDWSSPRPLRTEEIPQIVNDFRLAA 115
R S QP G APISST K ++ P + PR + T EI Q+V D+R +A
Sbjct: 118 RASHEVYQPAGAAPISSTEKPISNRWRILMPDGTHGIYPKPRAIGTYEISQVVEDYRRSA 177
Query: 116 RNAIEAG 122
NAIEAG
Sbjct: 178 LNAIEAG 184
>pdb|4A3U|A Chain A, X-Structure Of The Old Yellow Enzyme Homologue From
Zymomonas Mobilis (Ncr)
pdb|4A3U|B Chain B, X-Structure Of The Old Yellow Enzyme Homologue From
Zymomonas Mobilis (Ncr)
Length = 358
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 91/168 (54%), Gaps = 12/168 (7%)
Query: 6 TNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRV- 64
+ G +I+EATG+ G+P PGIW+ QVEAW PI AVH GG F QLWH+GR+
Sbjct: 47 ASAGLIISEATGISQEGLGWPYAPGIWSDAQVEAWLPITQAVHDAGGLIFAQLWHMGRMV 106
Query: 65 --STFGLQPNGKAPISSTNKGVTPGLDGQD-WSSPRPLRTEEIPQIVNDFRLAARNAIEA 121
+ G+QP AP +S G+ DG+ + R LR +EIP++++D+ AAR+A++A
Sbjct: 107 PSNVSGMQP--VAPSASQAPGLGHTYDGKKPYDVARALRLDEIPRLLDDYEKAARHALKA 164
Query: 122 GDSNSDFSNLNYMLIFSIKSDVEGRR------SYKQRKRLRQDRVERL 163
G N LI D R + + R RL +D ER+
Sbjct: 165 GFDGVQIHAANGYLIDEFIRDSTNHRHDEYGGAVENRIRLLKDVTERV 212
>pdb|3P82|A Chain A, H184n Mutant Of Pentaerythritol Tetranitrate Reductase
Containing Bound Acetate Ion
Length = 365
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 3 KRTTNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG 62
++ + G +I+EAT + +GY PG+ + EQ+ AWK I VH + G QLWH G
Sbjct: 47 RQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTG 106
Query: 63 RVSTFGLQPNGKAPISST--NKGVTPGLDGQ-------DWSSPRPLRTEEIPQIVNDFRL 113
R+S +QP G+AP+S++ N L + D ++PR L +EIP IVNDFR
Sbjct: 107 RISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQ 166
Query: 114 AARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRR------SYKQRKRLRQDRVERL-HQW 166
A NA EAG + + N L+ S +R S + R RL + V+ + ++W
Sbjct: 167 AVANAREAGFDLVELHSANGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEW 226
>pdb|2R14|A Chain A, Structure Of Morphinone Reductase In Complex With
Tetrahydronad
Length = 377
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 77/127 (60%), Gaps = 10/127 (7%)
Query: 6 TNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVS 65
+ G +I+EAT + T +GY TPGIWT Q WK +V+AVH KGG QLWHVGRVS
Sbjct: 53 ASAGLIISEATNISPTARGYVYTPGIWTDAQEAGWKGVVEAVHAKGGRIALQLWHVGRVS 112
Query: 66 TFGLQPNGKAPISST---NKGVTPGLDGQDW-------SSPRPLRTEEIPQIVNDFRLAA 115
+QP+G+ P++ + +G ++ +D S+PR L T+EIP IV D+R AA
Sbjct: 113 HELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDEIPGIVEDYRQAA 172
Query: 116 RNAIEAG 122
+ A AG
Sbjct: 173 QRAKRAG 179
>pdb|3GX9|A Chain A, Structure Of Morphinone Reductase N189a Mutant In Complex
With Tetrahydronad
Length = 377
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 77/127 (60%), Gaps = 10/127 (7%)
Query: 6 TNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVS 65
+ G +I+EAT + T +GY TPGIWT Q WK +V+AVH KGG QLWHVGRVS
Sbjct: 53 ASAGLIISEATNISPTARGYVYTPGIWTDAQEAGWKGVVEAVHAKGGRIALQLWHVGRVS 112
Query: 66 TFGLQPNGKAPISST---NKGVTPGLDGQDW-------SSPRPLRTEEIPQIVNDFRLAA 115
+QP+G+ P++ + +G ++ +D S+PR L T+EIP IV D+R AA
Sbjct: 113 HELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDEIPGIVEDYRQAA 172
Query: 116 RNAIEAG 122
+ A AG
Sbjct: 173 QRAKRAG 179
>pdb|3P74|A Chain A, H181n Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A C- Terminal His8-Tag
Length = 373
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 16/180 (8%)
Query: 3 KRTTNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG 62
++ + G +I+EAT + +GY PG+ + EQ+ AWK I VH + G QLWH G
Sbjct: 47 RQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTG 106
Query: 63 RVSTFGLQPNGKAPISST--NKGVTPGLDGQ-------DWSSPRPLRTEEIPQIVNDFRL 113
R+S +QP G+AP+S++ N L + D ++PR L +EIP IVNDFR
Sbjct: 107 RISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQ 166
Query: 114 AARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRR------SYKQRKRLRQDRVERL-HQW 166
A NA EAG + ++ + L+ S +R S + R RL + V+ + ++W
Sbjct: 167 AVANAREAGFDLVELNSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEW 226
>pdb|2ABB|A Chain A, Structure Of Petn Reductase Y186f In Complex With Cyanide
Length = 364
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 3 KRTTNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG 62
++ + G +I+EAT + +GY PG+ + EQ+ AWK I VH + G QLWH G
Sbjct: 46 RQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTG 105
Query: 63 RVSTFGLQPNGKAPISST--NKGVTPGLDGQ-------DWSSPRPLRTEEIPQIVNDFRL 113
R+S +QP G+AP+S++ N L + D ++PR L +EIP IVNDFR
Sbjct: 106 RISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQ 165
Query: 114 AARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRR------SYKQRKRLRQDRVERL-HQW 166
A NA EAG + + + L+ S +R S + R RL + V+ + ++W
Sbjct: 166 AVANAREAGFDLVELHSAHGFLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEW 225
>pdb|3P67|A Chain A, T26s Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 373
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 3 KRTTNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG 62
++ + G +I+EAT + +GY PG+ + EQ+ AWK I VH + G QLWH G
Sbjct: 47 RQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTG 106
Query: 63 RVSTFGLQPNGKAPISST--NKGVTPGLDGQ-------DWSSPRPLRTEEIPQIVNDFRL 113
R+S +QP G+AP+S++ N L + D ++PR L +EIP IVNDFR
Sbjct: 107 RISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQ 166
Query: 114 AARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRR------SYKQRKRLRQDRVERL-HQW 166
A NA EAG + + + L+ S +R S + R RL + V+ + ++W
Sbjct: 167 AVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEW 226
>pdb|3P7Y|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure With Bound
(E)-1-(2'-Hydroxyphenyl)-2-Nitroethene
pdb|3P80|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure Containing Bound
(E)-1-(3'-Hydroxyphenyl)-2-Nitroethene
pdb|3P81|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure Containing A Bound
(E)-1-(4'-Hydroxyphenyl)-2-Nitroethene Molecule
Length = 365
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 3 KRTTNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG 62
++ + G +I+EAT + +GY PG+ + EQ+ AWK I VH + G QLWH G
Sbjct: 47 RQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTG 106
Query: 63 RVSTFGLQPNGKAPISST--NKGVTPGLDGQ-------DWSSPRPLRTEEIPQIVNDFRL 113
R+S +QP G+AP+S++ N L + D ++PR L +EIP IVNDFR
Sbjct: 107 RISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQ 166
Query: 114 AARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRR------SYKQRKRLRQDRVERL-HQW 166
A NA EAG + + + L+ S +R S + R RL + V+ + ++W
Sbjct: 167 AVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEW 226
>pdb|3P62|A Chain A, Wild-Type Pentaerythritol Tetranitrate Reductase
Containing A C- Terminal 8-Histidine Tag
Length = 373
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 3 KRTTNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG 62
++ + G +I+EAT + +GY PG+ + EQ+ AWK I VH + G QLWH G
Sbjct: 47 RQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTG 106
Query: 63 RVSTFGLQPNGKAPISST--NKGVTPGLDGQ-------DWSSPRPLRTEEIPQIVNDFRL 113
R+S +QP G+AP+S++ N L + D ++PR L +EIP IVNDFR
Sbjct: 107 RISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQ 166
Query: 114 AARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRR------SYKQRKRLRQDRVERL-HQW 166
A NA EAG + + + L+ S +R S + R RL + V+ + ++W
Sbjct: 167 AVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEW 226
>pdb|3P8I|A Chain A, Y351f Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 3 KRTTNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG 62
++ + G +I+EAT + +GY PG+ + EQ+ AWK I VH + G QLWH G
Sbjct: 47 RQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTG 106
Query: 63 RVSTFGLQPNGKAPISST--NKGVTPGLDGQ-------DWSSPRPLRTEEIPQIVNDFRL 113
R+S +QP G+AP+S++ N L + D ++PR L +EIP IVNDFR
Sbjct: 107 RISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQ 166
Query: 114 AARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRR------SYKQRKRLRQDRVERL-HQW 166
A NA EAG + + + L+ S +R S + R RL + V+ + ++W
Sbjct: 167 AVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEW 226
>pdb|3P8J|A Chain A, Y351s Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 3 KRTTNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG 62
++ + G +I+EAT + +GY PG+ + EQ+ AWK I VH + G QLWH G
Sbjct: 47 RQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTG 106
Query: 63 RVSTFGLQPNGKAPISST--NKGVTPGLDGQ-------DWSSPRPLRTEEIPQIVNDFRL 113
R+S +QP G+AP+S++ N L + D ++PR L +EIP IVNDFR
Sbjct: 107 RISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQ 166
Query: 114 AARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRR------SYKQRKRLRQDRVERL-HQW 166
A NA EAG + + + L+ S +R S + R RL + V+ + ++W
Sbjct: 167 AVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEW 226
>pdb|1H50|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexes
pdb|1H60|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With Progesterone
pdb|1H61|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With Prednisone
pdb|1H62|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With 1,4-Androstadien-3,17-Dione
pdb|1H63|A Chain A, Structure Of The Reduced Pentaerythritol Tetranitrate
Reductase
pdb|1GVO|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With 2,4 Dinitrophenol
pdb|1GVQ|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With Cyclohexanone
pdb|1GVR|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With 2,4,6 Trinitrotoluene
pdb|1GVS|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With Picric Acid
pdb|1H51|A Chain A, Stucture Of Pentaerythritol Tetranirate Reductase And
Complexes
pdb|1VYR|A Chain A, Stucture Of Pentaerythritol Tetranirate Reductase
Complexed With Picric Acid
pdb|2ABA|A Chain A, Structure Of Reduced Petn Reductase In Complex With
Progesterone
pdb|3F03|K Chain K, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1-Nitrocyclohexene
pdb|3KFT|A Chain A, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1,4,5,6-Tetrahydro Nadh
pdb|3KFT|B Chain B, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1,4,5,6-Tetrahydro Nadh
Length = 364
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 3 KRTTNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG 62
++ + G +I+EAT + +GY PG+ + EQ+ AWK I VH + G QLWH G
Sbjct: 46 RQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTG 105
Query: 63 RVSTFGLQPNGKAPISST--NKGVTPGLDGQ-------DWSSPRPLRTEEIPQIVNDFRL 113
R+S +QP G+AP+S++ N L + D ++PR L +EIP IVNDFR
Sbjct: 106 RISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQ 165
Query: 114 AARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRR------SYKQRKRLRQDRVERL-HQW 166
A NA EAG + + + L+ S +R S + R RL + V+ + ++W
Sbjct: 166 AVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEW 225
>pdb|3P84|A Chain A, Y351a Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 3 KRTTNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG 62
++ + G +I+EAT + +GY PG+ + EQ+ AWK I VH + G QLWH G
Sbjct: 47 RQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTG 106
Query: 63 RVSTFGLQPNGKAPISST--NKGVTPGLDGQ-------DWSSPRPLRTEEIPQIVNDFRL 113
R+S +QP G+AP+S++ N L + D ++PR L +EIP IVNDFR
Sbjct: 107 RISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQ 166
Query: 114 AARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRR------SYKQRKRLRQDRVERL-HQW 166
A NA EAG + + + L+ S +R S + R RL + V+ + ++W
Sbjct: 167 AVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEW 226
>pdb|1GWJ|A Chain A, Morphinone Reductase
Length = 377
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 76/127 (59%), Gaps = 10/127 (7%)
Query: 6 TNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVS 65
+ G +I+EAT + T +GY TPGIWT Q WK +V+AVH KGG QLWHVGRVS
Sbjct: 53 ASAGLIISEATNISPTARGYVYTPGIWTDAQEAGWKGVVEAVHAKGGRIALQLWHVGRVS 112
Query: 66 TFGLQPNGKAPISST---NKGVTPGLDGQDW-------SSPRPLRTEEIPQIVNDFRLAA 115
+QP+G+ P++ + +G ++ +D S+PR L T+ IP IV D+R AA
Sbjct: 113 HELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDGIPGIVEDYRQAA 172
Query: 116 RNAIEAG 122
+ A AG
Sbjct: 173 QRAKRAG 179
>pdb|1VYS|X Chain X, Stucture Of Pentaerythritol Tetranitrate Reductase W102y
Mutant And Complexed With Picric Acid
Length = 364
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 73/129 (56%), Gaps = 9/129 (6%)
Query: 3 KRTTNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG 62
++ + G +I+EAT + +GY PG+ + EQ+ AWK I VH + G QL+H G
Sbjct: 46 RQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLYHTG 105
Query: 63 RVSTFGLQPNGKAPISST--NKGVTPGLDGQ-------DWSSPRPLRTEEIPQIVNDFRL 113
R+S +QP G+AP+S++ N L + D ++PR L +EIP IVNDFR
Sbjct: 106 RISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQ 165
Query: 114 AARNAIEAG 122
A NA EAG
Sbjct: 166 AVANAREAG 174
>pdb|1VYP|X Chain X, Stucture Of Pentaerythritol Tetranitrate Reductase W102f
Mutant And Complexed With Picric Acid
Length = 364
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 3 KRTTNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG 62
++ + G +I+EAT + +GY PG+ + EQ+ AWK I VH + G QL+H G
Sbjct: 46 RQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLFHTG 105
Query: 63 RVSTFGLQPNGKAPISST--NKGVTPGLDGQ-------DWSSPRPLRTEEIPQIVNDFRL 113
R+S +QP G+AP+S++ N L + D ++PR L +EIP IVNDFR
Sbjct: 106 RISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQ 165
Query: 114 AARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRR------SYKQRKRLRQDRVERL-HQW 166
A NA EAG + + + L+ S +R S + R RL + V+ + ++W
Sbjct: 166 AVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEW 225
>pdb|3GKA|A Chain A, Crystal Structure Of N-Ethylmaleimidine Reductase From
Burkholderia Pseudomallei
pdb|3GKA|B Chain B, Crystal Structure Of N-Ethylmaleimidine Reductase From
Burkholderia Pseudomallei
Length = 361
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 85/168 (50%), Gaps = 15/168 (8%)
Query: 6 TNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVS 65
+ G +I+EAT V GY +TPGIW+ EQV+ W+ + DAVH GG F QLWHVGRVS
Sbjct: 55 ASAGLIISEATSVTPQGVGYASTPGIWSPEQVDGWRLVTDAVHAAGGRIFLQLWHVGRVS 114
Query: 66 TFGLQPNGKAPISSTNKGVTPG------LDGQDWSSPRPLRTEEIPQIVNDFRLAARNAI 119
+ +G P++ + + PG + + +PR L +EIP +V FR A NA
Sbjct: 115 D-PVFLDGALPVAPS--AIAPGGHVSLVRPQRPYVTPRALELDEIPGVVAAFRRGAENAR 171
Query: 120 EAGDSNSDFSNLNYMLIFSIKSDVEGRR------SYKQRKRLRQDRVE 161
AG + N L+ D RR S + R RL + V+
Sbjct: 172 AAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVD 219
>pdb|4AB4|A Chain A, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
pdb|4AB4|B Chain B, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
pdb|4AEO|A Chain A, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
pdb|4AEO|B Chain B, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
Length = 362
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 82/160 (51%), Gaps = 11/160 (6%)
Query: 6 TNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVS 65
+ G +++EAT V GYP+TPGIW EQV W + AVH GG F QLWHVGR+S
Sbjct: 47 ASAGLILSEATSVSPMGVGYPDTPGIWNDEQVRGWNNVTKAVHAAGGRIFLQLWHVGRIS 106
Query: 66 TFGLQPNGKAPISSTN---KG-VTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIEA 121
NG+ P++ + KG V+ D+ +PR L TEEI IV +R A NA A
Sbjct: 107 HPSYL-NGELPVAPSAIQPKGHVSLVRPLSDYPTPRALETEEINDIVEAYRSGAENAKAA 165
Query: 122 GDSNSDFSNLN-YMLIFSIKSDVEGRR-----SYKQRKRL 155
G + N Y+L ++S R S + R RL
Sbjct: 166 GFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARL 205
>pdb|2GOU|A Chain A, Structure Of Wild Type, Oxidized Sye1, An Oye Homologue
From S. Oneidensis
pdb|2GQ8|A Chain A, Structure Of Sye1, An Oye Homologue From S. Ondeidensis,
In Complex With P-Hydroxyacetophenone
pdb|2GQ9|A Chain A, Structure Of Sye1, An Oye Homologue From S. Oneidensis, In
Complex With P-Hydroxybenzaldehyde
pdb|2GQA|A Chain A, Structure Of Nadh-Reduced Sye1, An Oye Homologue From S.
Oneidensis
Length = 365
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 88/176 (50%), Gaps = 21/176 (11%)
Query: 6 TNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVS 65
+ G +++E T + T +GY TPGI+T EQ+ W+ + +AVH KG F QLWHVGRV
Sbjct: 49 ASAGLIVSEGTQISPTAKGYAWTPGIYTPEQIAGWRIVTEAVHAKGCAIFAQLWHVGRV- 107
Query: 66 TFGLQPNGKAPISST------------NKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRL 113
T +G+ PISS+ N PG D + PR + +I Q++ D+R
Sbjct: 108 THPDNIDGQQPISSSTLKAENVKVFVDNGSDEPGF--VDVAVPRAMTKADIAQVIADYRQ 165
Query: 114 AARNAIEAGDSNSDFSNLN-YMLIFSIKSDVEGRR-----SYKQRKRLRQDRVERL 163
AA NA+EAG + N Y++ I S+ R S + R R + V L
Sbjct: 166 AALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAAL 221
>pdb|3ATY|A Chain A, Crystal Structure Of Tcoye
pdb|3ATY|B Chain B, Crystal Structure Of Tcoye
pdb|3ATZ|A Chain A, Crystal Structure Of Tcoye With Phba
pdb|3ATZ|B Chain B, Crystal Structure Of Tcoye With Phba
pdb|3ATZ|C Chain C, Crystal Structure Of Tcoye With Phba
pdb|3ATZ|D Chain D, Crystal Structure Of Tcoye With Phba
Length = 379
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 37/58 (63%)
Query: 6 TNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGR 63
+ G +IAEAT V G+ PGI++ Q+E W+ IVDAVH+KGG F QL H GR
Sbjct: 52 ASAGLIIAEATMVQPNYTGFLTEPGIYSDAQIEEWRKIVDAVHKKGGLIFLQLIHAGR 109
>pdb|3TJL|A Chain A, Crystal Structure Of A Novel Oye From The
Xylose-Fermenting Fungus P. Stipitis
pdb|3UPW|A Chain A, Pichia Stipitis Oye2.6 Complexed With Nicotinamide
Length = 407
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 3 KRTTNGGFLIAEATGVFDTVQGYPNT-PGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHV 61
+ T G LI EAT V GY PGIWT + +AWK I D VH G QL +
Sbjct: 56 RSTFPGTLLITEATFVSPQASGYEGAAPGIWTDKHAKAWKVITDKVHANGSFVSTQLIFL 115
Query: 62 GRVS------TFGLQPNGKAPISSTNKGVTPGLDGQDWSSP-RPLRTEEIPQIVND-FRL 113
GRV+ T GL P S+T + + +P R L T+E+ +V + +
Sbjct: 116 GRVADPAVMKTRGLNP---VSASATYESDAAKEAAEAVGNPVRALTTQEVKDLVYEAYTN 172
Query: 114 AARNAIEAG 122
AA+ A++AG
Sbjct: 173 AAQKAMDAG 181
>pdb|4DF2|A Chain A, P. Stipitis Oye2.6 Complexed With P-Chlorophenol
Length = 407
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 3 KRTTNGGFLIAEATGVFDTVQGYPNT-PGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHV 61
+ T G LI EAT V GY PGIWT + +AWK I D VH G QL +
Sbjct: 56 RSTFPGTLLITEATFVSPQASGYEGAAPGIWTDKHAKAWKVITDKVHANGSFVSTQLIFL 115
Query: 62 GRVS------TFGLQPNGKAPISSTNKGVTPGLDGQDWSSP-RPLRTEEIPQIVND-FRL 113
GRV+ T GL P S+T + + +P R L T+E+ +V + +
Sbjct: 116 GRVADPAVMKTRGLNP---VSASATYESDAAKEAAEAVGNPVRALTTQEVKDLVYETYTN 172
Query: 114 AARNAIEAG 122
AA+ A++AG
Sbjct: 173 AAQKAMDAG 181
>pdb|1BWK|A Chain A, Old Yellow Enzyme (Oye1) Mutant H191n
Length = 399
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 13/138 (9%)
Query: 8 GGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG----- 62
G +I E + GY N PG+W++EQ+ W I +A+H+K + QLW +G
Sbjct: 65 GTMIITEGAFISPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLWVLGWAAFP 124
Query: 63 -RVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRP---LRTEEIPQIVNDFRLAARNA 118
++ GL+ + +S N + + + + P L +EI Q + ++ AA+N+
Sbjct: 125 DNLARDGLRYDS----ASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNS 180
Query: 119 IEAGDSNSDFSNLNYMLI 136
I AG + ++ N L+
Sbjct: 181 IAAGADGVEINSANGYLL 198
>pdb|1OYA|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|1OYB|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|1OYC|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|3TX9|A Chain A, Oye1 Complexed With 2-(Hydroxymethyl)-Cyclopent-2-Enone
Length = 400
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 13/138 (9%)
Query: 8 GGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG----- 62
G +I E + GY N PG+W++EQ+ W I +A+H+K + QLW +G
Sbjct: 66 GTMIITEGAFISPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLWVLGWAAFP 125
Query: 63 -RVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRP---LRTEEIPQIVNDFRLAARNA 118
++ GL+ + +S N + + + + P L +EI Q + ++ AA+N+
Sbjct: 126 DNLARDGLRYDS----ASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNS 181
Query: 119 IEAGDSNSDFSNLNYMLI 136
I AG + + N L+
Sbjct: 182 IAAGADGVEIHSANGYLL 199
>pdb|3KRU|A Chain A, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
pdb|3KRU|B Chain B, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
pdb|3KRU|C Chain C, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
pdb|3KRU|D Chain D, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
Length = 343
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 57/140 (40%), Gaps = 11/140 (7%)
Query: 9 GFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFG 68
G ++ EAT V + + GIW EQV+ K IVD G QL H GR
Sbjct: 52 GLIMQEATAVESRGRITDHDLGIWNDEQVKELKKIVDICKANGAVMGIQLAHAGRKCNIS 111
Query: 69 LQP-NGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIEAGDSNSD 127
+ G +PI + G + PR L EEI IV F AA+ A AG +
Sbjct: 112 YEDVVGPSPIKA----------GDRYKLPRELSVEEIKSIVKAFGEAAKRANLAGYDVVE 161
Query: 128 FSNLNYMLIFSIKSDVEGRR 147
+ LI S + +R
Sbjct: 162 IHAAHGYLIHEFLSPLSNKR 181
>pdb|3KRZ|A Chain A, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
pdb|3KRZ|B Chain B, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
pdb|3KRZ|C Chain C, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
pdb|3KRZ|D Chain D, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
Length = 337
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 57/140 (40%), Gaps = 11/140 (7%)
Query: 9 GFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFG 68
G ++ EAT V + + GIW EQV+ K IVD G QL H GR
Sbjct: 52 GLIMQEATAVESRGRITDHDLGIWNDEQVKELKKIVDICKANGAVMGIQLAHAGRKCNIS 111
Query: 69 LQP-NGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIEAGDSNSD 127
+ G +PI + G + PR L EEI IV F AA+ A AG +
Sbjct: 112 YEDVVGPSPIKA----------GDRYKLPRELSVEEIKSIVKAFGEAAKRANLAGYDVVE 161
Query: 128 FSNLNYMLIFSIKSDVEGRR 147
+ LI S + +R
Sbjct: 162 IHAAHGYLIHEFLSPLSNKR 181
>pdb|1BWL|A Chain A, Old Yellow Enzyme (Oye1) Double Mutant H191n:n194h
Length = 399
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 13/138 (9%)
Query: 8 GGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG----- 62
G +I E + GY N PG+W++EQ+ W I +A+H+K + QLW +G
Sbjct: 65 GTMIITEGAFISPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLWVLGWAAFP 124
Query: 63 -RVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRP---LRTEEIPQIVNDFRLAARNA 118
++ GL+ + +S N + + + + P L +EI Q + ++ AA+N+
Sbjct: 125 DNLARDGLRYDS----ASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNS 180
Query: 119 IEAGDSNSDFSNLNYMLI 136
I AG + ++ + L+
Sbjct: 181 IAAGADGVEINSAHGYLL 198
>pdb|1K02|A Chain A, Crystal Structure Of Old Yellow Enzyme Mutant Gln114asn
pdb|1K03|A Chain A, Crystal Structure Of Old Yellow Enzyme Mutant Gln114asn
Complexed With Para-Hydroxy Benzaldehyde
Length = 399
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 8 GGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG----- 62
G +I E + GY N PG+W++EQ+ W I +A+H+K + LW +G
Sbjct: 65 GTMIITEGAFISPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVNLWVLGWAAFP 124
Query: 63 -RVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRP---LRTEEIPQIVNDFRLAARNA 118
++ GL+ + +S N + + + + P L +EI Q + ++ AA+N+
Sbjct: 125 DNLARDGLRYDS----ASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNS 180
Query: 119 IEAGDSNSDFSNLNYMLI 136
I AG + + N L+
Sbjct: 181 IAAGADGVEIHSANGYLL 198
>pdb|4GWE|A Chain A, W116l-Oye1 Complexed With (R)-Carvone
pdb|4GXM|A Chain A, Oye1-W116l In Complex With Aromatic Product Of R-Carvone
Dismutation
Length = 400
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 8 GGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG----- 62
G +I E + GY N PG+W++EQ+ W I +A+H+K + QL +G
Sbjct: 66 GTMIITEGAFISPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLLVLGWAAFP 125
Query: 63 -RVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRP---LRTEEIPQIVNDFRLAARNA 118
++ GL+ + +S N + + + + P L +EI Q + ++ AA+N+
Sbjct: 126 DNLARDGLRYDS----ASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNS 181
Query: 119 IEAGDSNSDFSNLNYMLI 136
I AG + + N L+
Sbjct: 182 IAAGADGVEIHSANGYLL 199
>pdb|3TXZ|A Chain A, Oye1-W116q Complexed With R-Carvone
Length = 400
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 8 GGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG----- 62
G +I E + GY N PG+W++EQ+ W I +A+H+K + QL +G
Sbjct: 66 GTMIITEGAFISPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLQVLGWAAFP 125
Query: 63 -RVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRP---LRTEEIPQIVNDFRLAARNA 118
++ GL+ + +S N + + + + P L +EI Q + ++ AA+N+
Sbjct: 126 DNLARDGLRYDS----ASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNS 181
Query: 119 IEAGDSNSDFSNLNYMLI 136
I AG + + N L+
Sbjct: 182 IAAGADGVEIHSANGYLL 199
>pdb|4GBU|A Chain A, Oye1-W116a In Complex With Aromatic Product Of S-Carvone
Dismutation
Length = 400
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 8 GGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG----- 62
G +I E + GY N PG+W++EQ+ W I +A+H+K + QL +G
Sbjct: 66 GTMIITEGAFISPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLAVLGWAAFP 125
Query: 63 -RVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRP---LRTEEIPQIVNDFRLAARNA 118
++ GL+ + +S N + + + + P L +EI Q + ++ AA+N+
Sbjct: 126 DNLARDGLRYDS----ASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNS 181
Query: 119 IEAGDSNSDFSNLNYMLI 136
I AG + + N L+
Sbjct: 182 IAAGADGVEIHSANGYLL 199
>pdb|4GE8|A Chain A, Oye1-W116i Complexed With (S)-Carvone
Length = 400
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 8 GGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG----- 62
G +I E + GY N PG+W++EQ+ W I +A+H+K + QL +G
Sbjct: 66 GTMIITEGAFISPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLIVLGWAAFP 125
Query: 63 -RVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRP---LRTEEIPQIVNDFRLAARNA 118
++ GL+ + +S N + + + + P L +EI Q + ++ AA+N+
Sbjct: 126 DNLARDGLRYDS----ASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNS 181
Query: 119 IEAGDSNSDFSNLNYMLI 136
I AG + + N L+
Sbjct: 182 IAAGADGVEIHSANGYLL 199
>pdb|3RND|A Chain A, W116i-Oye1 Complexed With
2-(Hydroxymethyl)-Cyclopent-2-Enone
Length = 399
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 8 GGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG----- 62
G +I E + GY N PG+W++EQ+ W I +A+H+K + QL +G
Sbjct: 65 GTMIITEGAFISPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLIVLGWAAFP 124
Query: 63 -RVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRP---LRTEEIPQIVNDFRLAARNA 118
++ GL+ + +S N + + + + P L +EI Q + ++ AA+N+
Sbjct: 125 DNLARDGLRYDS----ASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNS 180
Query: 119 IEAGDSNSDFSNLNYMLI 136
I AG + + N L+
Sbjct: 181 IAAGADGVEIHSANGYLL 198
>pdb|3N14|A Chain A, Xena - W358a
Length = 363
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 7/122 (5%)
Query: 8 GGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTF 67
G L+ EAT V + P GIW+ +A+ P+V A+ G Q+ H GR ++
Sbjct: 50 AGLLVVEATAVAPEGRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASA 109
Query: 68 GLQPNGKAPISSTN----KGVTP---GLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIE 120
G I++ + + + P PR + ++I ++ DF AAR A +
Sbjct: 110 NRPWEGDDHIAADDTRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARD 169
Query: 121 AG 122
AG
Sbjct: 170 AG 171
>pdb|3L5L|A Chain A, Xenobiotic Reductase A - Oxidized
pdb|3L5M|A Chain A, Xenobiotic Reductase A - Coumarin Bound
pdb|3N19|B Chain B, Xena - Reduced
pdb|3N19|D Chain D, Xena - Reduced
Length = 363
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 7/122 (5%)
Query: 8 GGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTF 67
G L+ EAT V + P GIW+ +A+ P+V A+ G Q+ H GR ++
Sbjct: 50 AGLLVVEATAVAPEGRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASA 109
Query: 68 GLQPNGKAPISSTN----KGVTP---GLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIE 120
G I++ + + + P PR + ++I ++ DF AAR A +
Sbjct: 110 NRPWEGDDHIAADDTRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARD 169
Query: 121 AG 122
AG
Sbjct: 170 AG 171
>pdb|3N16|A Chain A, Xena - Y183f
Length = 363
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 7/122 (5%)
Query: 8 GGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTF 67
G L+ EAT V + P GIW+ +A+ P+V A+ G Q+ H GR ++
Sbjct: 50 AGLLVVEATAVAPEGRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASA 109
Query: 68 GLQPNGKAPISSTN----KGVTP---GLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIE 120
G I++ + + + P PR + ++I ++ DF AAR A +
Sbjct: 110 NRPWEGDDHIAADDTRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARD 169
Query: 121 AG 122
AG
Sbjct: 170 AG 171
>pdb|3L67|A Chain A, Xenobiotic Reductase A - C25s Variant
pdb|3L68|A Chain A, Xenobiotic Reductase A - C25s Variant With Coumarin
Length = 363
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 7/122 (5%)
Query: 8 GGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTF 67
G L+ EAT V + P GIW+ +A+ P+V A+ G Q+ H GR ++
Sbjct: 50 AGLLVVEATAVAPEGRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASA 109
Query: 68 GLQPNGKAPISSTN----KGVTP---GLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIE 120
G I++ + + + P PR + ++I ++ DF AAR A +
Sbjct: 110 NRPWEGDDHIAADDTRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARD 169
Query: 121 AG 122
AG
Sbjct: 170 AG 171
>pdb|3L65|A Chain A, Xenobiotic Reductase A - C25a Mutant
pdb|3L66|A Chain A, Xenobiotic Reductase A - C25a Variant With Coumarin
Length = 363
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 7/122 (5%)
Query: 8 GGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTF 67
G L+ EAT V + P GIW+ +A+ P+V A+ G Q+ H GR ++
Sbjct: 50 AGLLVVEATAVAPEGRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASA 109
Query: 68 GLQPNGKAPISSTN----KGVTP---GLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIE 120
G I++ + + + P PR + ++I ++ DF AAR A +
Sbjct: 110 NRPWEGDDHIAADDTRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARD 169
Query: 121 AG 122
AG
Sbjct: 170 AG 171
>pdb|2H8Z|A Chain A, Xenobiotic Reductase A In Complex With 8-Hydroxycoumarin
pdb|2H90|A Chain A, Xenobiotic Reductase A In Complex With Coumarin
Length = 359
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 7/122 (5%)
Query: 8 GGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTF 67
G L+ EAT V + P GIW+ +A+ P+V A+ G Q+ H GR ++
Sbjct: 49 AGLLVVEATAVAPEGRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASA 108
Query: 68 GLQPNGKAPISSTN----KGVTP---GLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIE 120
G I++ + + + P PR + ++I ++ DF AAR A +
Sbjct: 109 NRPWEGDDHIAADDTRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARD 168
Query: 121 AG 122
AG
Sbjct: 169 AG 170
>pdb|2H8X|A Chain A, Xenobiotic Reductase A-Oxidized
Length = 358
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 7/122 (5%)
Query: 8 GGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTF 67
G L+ EAT V + P GIW+ +A+ P+V A+ G Q+ H GR ++
Sbjct: 48 AGLLVVEATAVAPEGRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASA 107
Query: 68 GLQPNGKAPISSTN----KGVTP---GLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIE 120
G I++ + + + P PR + ++I ++ DF AAR A +
Sbjct: 108 NRPWEGDDHIAADDTRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARD 167
Query: 121 AG 122
AG
Sbjct: 168 AG 169
>pdb|3GR7|A Chain A, Structure Of Oye From Geobacillus Kaustophilus, Hexagonal
Crystal Form
pdb|3GR7|B Chain B, Structure Of Oye From Geobacillus Kaustophilus, Hexagonal
Crystal Form
pdb|3GR8|A Chain A, Structure Of Oye From Geobacillus Kaustophilus,
Orthorhombic Crystal Form
pdb|3GR8|B Chain B, Structure Of Oye From Geobacillus Kaustophilus,
Orthorhombic Crystal Form
Length = 340
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 56/141 (39%), Gaps = 14/141 (9%)
Query: 9 GFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFG 68
G +I EATGV + GIW+ + + + +V V + G QL H GR S
Sbjct: 54 GLIIVEATGVTPQGRISERDLGIWSDDHIAGLRELVGLVKEHGAAIGIQLAHAGRKSQV- 112
Query: 69 LQPNGKAPISSTNKGVTPGLDGQDWSSPRP--LRTEEIPQIVNDFRLAARNAIEAGDSNS 126
+ + P D SSP P + +I + V F+ AR A EAG
Sbjct: 113 -----------PGEIIAPSAVPFDDSSPTPKEMTKADIEETVQAFQNGARRAKEAGFDVI 161
Query: 127 DFSNLNYMLIFSIKSDVEGRR 147
+ + LI S + RR
Sbjct: 162 EIHAAHGYLINEFLSPLSNRR 182
>pdb|3HF3|A Chain A, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HF3|B Chain B, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HF3|C Chain C, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HF3|D Chain D, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HGJ|A Chain A, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
pdb|3HGJ|B Chain B, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
pdb|3HGJ|C Chain C, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
pdb|3HGJ|D Chain D, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
Length = 349
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 49/114 (42%)
Query: 9 GFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFG 68
G ++ EAT V + P GIW+++ + K + + + G QL H GR +
Sbjct: 52 GLILVEATAVEPLGRISPYDLGIWSEDHLPGLKELARRIREAGAVPGIQLAHAGRKAGTA 111
Query: 69 LQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIEAG 122
G P+ G +P + + P PL + +I+ F AR A+ AG
Sbjct: 112 RPWEGGKPLGWRVVGPSPIPFDEGYPVPEPLDEAGMERILQAFVEGARRALRAG 165
>pdb|1Z41|A Chain A, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
pdb|1Z41|B Chain B, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
pdb|1Z42|A Chain A, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
Complexed With P-Hydroxybenzaldehyde
pdb|1Z42|B Chain B, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
Complexed With P-Hydroxybenzaldehyde
pdb|1Z44|A Chain A, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
Complexed With P-Nitrophenol
pdb|1Z44|B Chain B, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
Complexed With P-Nitrophenol
pdb|1Z48|A Chain A, Crystal Structure Of Reduced Yqjm From Bacillus Subtilis
pdb|1Z48|B Chain B, Crystal Structure Of Reduced Yqjm From Bacillus Subtilis
Length = 338
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 10/140 (7%)
Query: 9 GFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFG 68
G +I EA+ V + GIW+ E +E + + + V ++G QL H GR +
Sbjct: 54 GLIIVEASAVNPQGRITDQDLGIWSDEHIEGFAKLTEQVKEQGSKIGIQLAHAGRKAE-- 111
Query: 69 LQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF 128
L+ + AP + D Q ++P E++ + V +F+ AA A EAG +
Sbjct: 112 LEGDIFAPSAI-------AFDEQS-ATPVEXSAEKVKETVQEFKQAAARAKEAGFDVIEI 163
Query: 129 SNLNYMLIFSIKSDVEGRRS 148
+ LI S + R+
Sbjct: 164 HAAHGYLIHEFLSPLSNHRT 183
>pdb|1PS9|A Chain A, The Crystal Structure And Reaction Mechanism Of E. Coli
2,4- Dienoyl Coa Reductase
Length = 671
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 36 QVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSS 95
Q+ + I +AVHQ+GG Q+ H GR + QP+ AP S+ + +
Sbjct: 79 QIPHHRTITEAVHQEGGKIALQILHTGR---YSYQPHLVAP-SALQAPI-------NRFV 127
Query: 96 PRPLRTEEIPQIVNDFRLAARNAIEAG 122
P L EEI Q++++F A+ A EAG
Sbjct: 128 PHELSHEEILQLIDNFARCAQLAREAG 154
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 31 IWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDG 90
IW + + A K I DA+H+ GG +L H G + Q + + P+ + V P
Sbjct: 82 IWDDQDLPALKRIADAIHEGGGLAGIELAHNGMNAPN--QLSRETPLGPGHLPVAP---- 135
Query: 91 QDWSSP---RPLRTEEIPQIVNDFRLAARNAIEAG 122
D +P R + ++I + R A R +IEAG
Sbjct: 136 -DTIAPIQARAMTKQDIDDLRRWHRNAVRRSIEAG 169
>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin
Reductase, C- Terminal 3-Residue Truncation
Length = 488
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 15/127 (11%)
Query: 52 GTFFCQLWHVGRVS---TFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPL--------- 99
GTF LW +GRV T L+ KA IS+ K +D Q+ +S +
Sbjct: 274 GTFDTVLWAIGRVPETRTLNLE---KAGISTNPKNQKIIVDAQEATSVPHIYAIGDVAEG 330
Query: 100 RTEEIPQIVNDFRLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRRSYKQRKRLRQDR 159
R E P + +L A+ + D+SN+ + ++ G + Q+
Sbjct: 331 RPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTVFTPLEYGCVGLSEEEAVALHGQEH 390
Query: 160 VERLHQW 166
VE H +
Sbjct: 391 VEVYHAY 397
>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
pdb|1ZKQ|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
Length = 517
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 15/127 (11%)
Query: 52 GTFFCQLWHVGRVS---TFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPL--------- 99
GTF LW +GRV T L+ KA IS+ K +D Q+ +S +
Sbjct: 300 GTFDTVLWAIGRVPETRTLNLE---KAGISTNPKNQKIIVDAQEATSVPHIYAIGDVAEG 356
Query: 100 RTEEIPQIVNDFRLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRRSYKQRKRLRQDR 159
R E P + +L A+ + D+SN+ + ++ G + Q+
Sbjct: 357 RPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTVFTPLEYGCVGLSEEEAVALHGQEH 416
Query: 160 VERLHQW 166
VE H +
Sbjct: 417 VEVYHAY 423
>pdb|3OWT|A Chain A, Crystal Structure Of S. Cerevisiae Rap1-Sir3 Complex
pdb|3OWT|B Chain B, Crystal Structure Of S. Cerevisiae Rap1-Sir3 Complex
Length = 157
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 20 DTVQGYPNTPGIWTKEQVEAWK 41
D V PN PGIWT + E+ K
Sbjct: 105 DNVNPPPNVPGIWTHDDDESLK 126
>pdb|3CZ6|A Chain A, Crystal Structure Of The Rap1 C-Terminus
pdb|3CZ6|B Chain B, Crystal Structure Of The Rap1 C-Terminus
Length = 168
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 20 DTVQGYPNTPGIWTKEQVEAWK 41
D V PN PGIWT + E+ K
Sbjct: 105 DNVNPPPNVPGIWTHDDDESLK 126
>pdb|1SFP|A Chain A, Crystal Structure Of Acidic Seminal Fluid Protein (Asfp)
At 1.9 A Resolution: A Bovine Polypeptide From The
Spermadhesin Family
Length = 114
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 2 LKRTTNGGFLIAEATGVFDTVQGYPNTPGIWT 33
L R TN G ++ E +GV T G P T +WT
Sbjct: 4 LPRNTNCGGILKEESGVIATYYG-PKTNCVWT 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,153,454
Number of Sequences: 62578
Number of extensions: 261205
Number of successful extensions: 777
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 678
Number of HSP's gapped (non-prelim): 58
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)