Query 036028
Match_columns 193
No_of_seqs 154 out of 1127
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 08:42:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036028.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036028hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1902 NemA NADH:flavin oxido 100.0 5.4E-58 1.2E-62 401.4 18.0 183 1-189 45-237 (363)
2 PF00724 Oxidored_FMN: NADH:fl 100.0 1.4E-57 3.1E-62 397.0 12.1 187 1-190 42-237 (341)
3 PLN02411 12-oxophytodienoate r 100.0 1.1E-55 2.3E-60 391.3 19.1 176 1-178 50-238 (391)
4 PRK10605 N-ethylmaleimide redu 100.0 2.7E-55 5.9E-60 385.4 18.9 186 1-189 43-248 (362)
5 cd04735 OYE_like_4_FMN Old yel 100.0 8.1E-54 1.8E-58 375.0 17.9 184 1-190 41-236 (353)
6 cd02929 TMADH_HD_FMN Trimethyl 100.0 4.2E-53 9.1E-58 372.5 18.0 178 1-183 44-230 (370)
7 cd04733 OYE_like_2_FMN Old yel 100.0 7.6E-53 1.6E-57 366.8 18.3 184 1-189 41-236 (338)
8 cd04734 OYE_like_3_FMN Old yel 100.0 1.1E-52 2.3E-57 366.7 18.0 182 1-190 39-229 (343)
9 cd04747 OYE_like_5_FMN Old yel 100.0 1.9E-52 4.2E-57 366.8 18.6 171 1-178 39-218 (361)
10 cd02933 OYE_like_FMN Old yello 100.0 3.8E-52 8.3E-57 362.5 19.4 181 1-184 41-232 (338)
11 PRK13523 NADPH dehydrogenase N 100.0 3.3E-52 7.2E-57 362.7 18.5 176 1-189 43-227 (337)
12 cd02930 DCR_FMN 2,4-dienoyl-Co 100.0 2.4E-51 5.1E-56 359.3 18.5 177 1-189 39-224 (353)
13 cd02932 OYE_YqiM_FMN Old yello 100.0 1E-50 2.2E-55 353.0 18.5 183 1-189 39-241 (336)
14 cd02803 OYE_like_FMN_family Ol 100.0 5.9E-51 1.3E-55 352.2 16.8 180 1-188 39-227 (327)
15 cd02931 ER_like_FMN Enoate red 100.0 2E-50 4.3E-55 356.8 18.5 176 1-182 41-230 (382)
16 PRK08255 salicylyl-CoA 5-hydro 100.0 4.1E-49 8.9E-54 374.2 19.1 184 1-190 437-639 (765)
17 KOG0134 NADH:flavin oxidoreduc 100.0 4E-35 8.6E-40 256.0 7.8 187 2-189 51-261 (400)
18 cd04740 DHOD_1B_like Dihydroor 99.0 8.4E-09 1.8E-13 88.3 12.1 116 7-178 33-161 (296)
19 cd02801 DUS_like_FMN Dihydrour 99.0 8.9E-10 1.9E-14 90.5 5.9 59 108-178 66-130 (231)
20 PRK11815 tRNA-dihydrouridine s 98.6 8.2E-08 1.8E-12 83.9 6.1 58 109-178 77-140 (333)
21 TIGR00737 nifR3_yhdG putative 98.6 7.9E-08 1.7E-12 83.3 5.7 57 109-178 75-138 (319)
22 PRK10550 tRNA-dihydrouridine s 98.5 1.8E-07 3.9E-12 81.2 6.6 62 109-178 75-140 (312)
23 PRK07259 dihydroorotate dehydr 98.5 1.2E-06 2.7E-11 75.2 11.0 114 7-178 36-164 (301)
24 TIGR01037 pyrD_sub1_fam dihydr 98.5 1.9E-06 4.2E-11 73.9 11.4 116 7-179 35-165 (300)
25 cd02810 DHOD_DHPD_FMN Dihydroo 98.2 2.9E-05 6.3E-10 66.1 12.3 58 109-178 111-169 (289)
26 cd03316 MR_like Mandelate race 97.7 0.0001 2.3E-09 64.4 6.5 57 107-178 139-196 (357)
27 TIGR00742 yjbN tRNA dihydrouri 97.6 0.00011 2.4E-09 64.0 6.0 58 109-178 67-130 (318)
28 cd04722 TIM_phosphate_binding 97.5 0.0006 1.3E-08 53.1 8.6 95 8-178 26-121 (200)
29 cd04739 DHOD_like Dihydroorota 97.3 0.0047 1E-07 53.9 12.5 56 109-178 112-170 (325)
30 PRK10415 tRNA-dihydrouridine s 96.8 0.0045 9.8E-08 53.9 7.0 58 109-178 77-140 (321)
31 PRK05286 dihydroorotate dehydr 96.4 0.1 2.2E-06 45.9 12.9 62 107-179 155-219 (344)
32 cd04741 DHOD_1A_like Dihydroor 95.8 0.27 5.8E-06 42.3 12.5 56 109-178 103-164 (294)
33 cd02940 DHPD_FMN Dihydropyrimi 95.4 0.066 1.4E-06 46.0 7.3 58 109-178 113-175 (299)
34 cd04738 DHOD_2_like Dihydrooro 95.1 0.28 6.2E-06 42.7 10.5 63 105-179 144-210 (327)
35 COG0042 tRNA-dihydrouridine sy 94.7 0.079 1.7E-06 46.3 5.9 61 109-178 79-143 (323)
36 PLN02495 oxidoreductase, actin 94.6 0.12 2.7E-06 46.2 7.1 58 108-178 126-189 (385)
37 PRK07565 dihydroorotate dehydr 94.0 0.22 4.8E-06 43.5 7.4 56 109-178 114-172 (334)
38 PRK08318 dihydropyrimidine deh 94.0 0.2 4.3E-06 45.1 7.2 58 109-178 113-175 (420)
39 cd02911 arch_FMN Archeal FMN-b 92.9 0.97 2.1E-05 37.6 9.0 116 7-179 22-147 (233)
40 cd00945 Aldolase_Class_I Class 91.9 0.62 1.3E-05 36.4 6.5 56 108-178 64-120 (201)
41 cd03329 MR_like_4 Mandelate ra 90.9 0.79 1.7E-05 40.4 6.7 51 109-178 145-196 (368)
42 PF01207 Dus: Dihydrouridine s 89.3 0.31 6.6E-06 42.2 2.7 60 109-178 66-129 (309)
43 PRK09196 fructose-1,6-bisphosp 89.3 3.3 7.2E-05 36.7 9.2 105 36-166 27-135 (347)
44 PF01180 DHO_dh: Dihydroorotat 88.9 1.5 3.3E-05 37.4 6.7 61 105-179 108-170 (295)
45 TIGR01036 pyrD_sub2 dihydrooro 88.2 14 0.00031 32.4 12.5 60 107-178 152-217 (335)
46 PRK02506 dihydroorotate dehydr 87.6 2.1 4.5E-05 37.1 6.8 57 109-178 105-164 (310)
47 TIGR02708 L_lactate_ox L-lacta 85.4 3.1 6.7E-05 37.1 6.8 66 97-177 213-289 (367)
48 cd00003 PNPsynthase Pyridoxine 84.2 7.5 0.00016 32.6 8.1 84 34-132 106-190 (234)
49 PF03437 BtpA: BtpA family; I 84.1 2 4.3E-05 36.4 4.8 64 103-178 23-87 (254)
50 PF07745 Glyco_hydro_53: Glyco 82.8 33 0.00072 30.2 12.3 117 37-178 57-176 (332)
51 TIGR01370 cysRS possible cyste 82.7 13 0.00028 32.5 9.4 65 98-168 139-205 (315)
52 PF13200 DUF4015: Putative gly 82.7 21 0.00046 31.2 10.7 126 37-178 60-194 (316)
53 PRK13399 fructose-1,6-bisphosp 82.1 17 0.00036 32.3 9.9 105 36-166 27-135 (347)
54 TIGR00559 pdxJ pyridoxine 5'-p 80.6 13 0.00028 31.3 8.2 83 34-133 106-191 (237)
55 COG1908 FrhD Coenzyme F420-red 80.5 2.5 5.4E-05 32.0 3.6 44 115-164 46-91 (132)
56 PRK11197 lldD L-lactate dehydr 79.8 4.7 0.0001 36.2 5.8 63 98-176 231-305 (381)
57 TIGR01521 FruBisAldo_II_B fruc 77.9 19 0.0004 32.0 8.9 104 36-165 25-132 (347)
58 cd03332 LMO_FMN L-Lactate 2-mo 77.5 5.8 0.00013 35.6 5.7 63 98-176 239-313 (383)
59 PRK09989 hypothetical protein; 77.2 2.5 5.5E-05 35.0 3.2 23 111-133 17-40 (258)
60 cd04724 Tryptophan_synthase_al 76.8 5.5 0.00012 33.2 5.1 53 109-167 14-75 (242)
61 cd00951 KDGDH 5-dehydro-4-deox 76.7 27 0.00058 29.7 9.4 28 37-64 20-47 (289)
62 TIGR03849 arch_ComA phosphosul 76.3 13 0.00029 31.2 7.2 24 107-130 69-93 (237)
63 cd00953 KDG_aldolase KDG (2-ke 75.2 20 0.00044 30.4 8.2 27 37-63 19-45 (279)
64 TIGR00736 nifR3_rel_arch TIM-b 74.9 11 0.00024 31.4 6.4 112 7-178 16-141 (231)
65 cd04736 MDH_FMN Mandelate dehy 74.7 4.7 0.0001 35.9 4.3 58 97-168 221-289 (361)
66 PLN02535 glycolate oxidase 74.1 14 0.00031 32.9 7.2 64 97-176 208-283 (364)
67 PF01070 FMN_dh: FMN-dependent 73.9 6.9 0.00015 34.7 5.2 64 98-177 211-286 (356)
68 COG2355 Zn-dependent dipeptida 73.7 3.7 8E-05 35.9 3.3 115 39-184 150-264 (313)
69 TIGR00167 cbbA ketose-bisphosp 73.6 42 0.00092 28.9 9.8 92 37-166 28-130 (288)
70 PRK07998 gatY putative fructos 73.5 38 0.00082 29.2 9.4 92 36-166 27-127 (283)
71 PF00682 HMGL-like: HMGL-like 73.1 35 0.00075 27.8 8.9 85 33-178 103-188 (237)
72 COG0434 SgcQ Predicted TIM-bar 71.8 10 0.00022 32.1 5.3 69 102-182 27-97 (263)
73 TIGR01302 IMP_dehydrog inosine 71.2 13 0.00028 33.9 6.5 45 112-177 226-271 (450)
74 PRK12738 kbaY tagatose-bisphos 71.2 42 0.00091 28.9 9.2 91 37-166 28-127 (286)
75 PF02679 ComA: (2R)-phospho-3- 71.0 8 0.00017 32.6 4.7 30 101-130 76-106 (244)
76 COG0329 DapA Dihydrodipicolina 70.8 68 0.0015 27.6 12.0 93 37-178 24-138 (299)
77 TIGR01858 tag_bisphos_ald clas 70.8 49 0.0011 28.4 9.5 91 37-166 26-125 (282)
78 cd08592 PI-PLCc_gamma Catalyti 70.8 16 0.00035 30.5 6.3 59 114-178 34-95 (229)
79 COG1830 FbaB DhnA-type fructos 70.5 13 0.00028 31.7 5.8 61 33-128 125-185 (265)
80 cd00958 DhnA Class I fructose- 69.9 24 0.00051 28.8 7.2 25 34-58 105-129 (235)
81 PRK12313 glycogen branching en 69.1 1.1E+02 0.0023 29.2 13.5 123 37-168 219-354 (633)
82 PRK07709 fructose-bisphosphate 68.1 71 0.0015 27.5 10.0 83 36-166 27-130 (285)
83 TIGR01163 rpe ribulose-phospha 68.1 9.7 0.00021 30.2 4.5 44 109-167 11-55 (210)
84 PRK06801 hypothetical protein; 68.0 70 0.0015 27.5 9.9 92 36-166 27-127 (286)
85 PRK09997 hydroxypyruvate isome 67.8 5.9 0.00013 32.8 3.2 22 111-132 17-39 (258)
86 PF05853 DUF849: Prokaryotic p 67.7 14 0.00031 31.4 5.6 60 98-178 22-82 (272)
87 cd03319 L-Ala-DL-Glu_epimerase 66.9 20 0.00043 30.7 6.4 46 109-176 136-182 (316)
88 PRK12737 gatY tagatose-bisphos 66.7 53 0.0011 28.3 8.9 92 36-166 27-127 (284)
89 TIGR03249 KdgD 5-dehydro-4-deo 66.6 40 0.00087 28.7 8.2 27 37-63 25-51 (296)
90 PF07364 DUF1485: Protein of u 66.2 17 0.00037 31.4 5.8 65 98-178 74-138 (292)
91 cd00952 CHBPH_aldolase Trans-o 66.1 84 0.0018 27.0 10.2 28 37-64 28-55 (309)
92 PRK05402 glycogen branching en 66.0 1.3E+02 0.0029 29.2 13.3 126 37-168 314-450 (726)
93 TIGR00259 thylakoid_BtpA membr 66.0 13 0.00028 31.6 4.9 65 102-178 21-86 (257)
94 PTZ00314 inosine-5'-monophosph 65.9 16 0.00034 33.9 5.9 44 112-176 243-287 (495)
95 PLN02493 probable peroxisomal 64.7 9.9 0.00021 34.0 4.2 65 97-176 209-284 (367)
96 TIGR03234 OH-pyruv-isom hydrox 64.6 6.3 0.00014 32.4 2.8 20 111-130 16-36 (254)
97 PRK07315 fructose-bisphosphate 64.5 68 0.0015 27.7 9.2 97 36-166 27-129 (293)
98 PRK08610 fructose-bisphosphate 64.4 78 0.0017 27.3 9.5 82 36-165 27-129 (286)
99 cd04737 LOX_like_FMN L-Lactate 64.2 25 0.00053 31.2 6.6 64 98-176 207-281 (351)
100 PRK09195 gatY tagatose-bisphos 64.1 63 0.0014 27.8 8.9 83 36-166 27-127 (284)
101 PLN00038 photosystem I reactio 63.7 1.2 2.6E-05 35.0 -1.6 23 122-144 50-76 (165)
102 PRK00704 photosystem I reactio 63.4 1.2 2.6E-05 34.9 -1.6 22 123-144 42-67 (160)
103 PRK09197 fructose-bisphosphate 63.4 36 0.00077 30.3 7.4 109 36-166 30-158 (350)
104 CHL00120 psaL photosystem I su 63.4 1.2 2.6E-05 34.3 -1.6 22 123-144 45-70 (143)
105 PRK06233 hypothetical protein; 62.8 64 0.0014 28.6 9.0 90 101-191 163-257 (372)
106 PRK05265 pyridoxine 5'-phospha 62.5 52 0.0011 27.7 7.8 83 34-132 109-192 (239)
107 cd02922 FCB2_FMN Flavocytochro 62.5 13 0.00028 32.9 4.5 35 98-132 199-244 (344)
108 PF03740 PdxJ: Pyridoxal phosp 62.4 19 0.00042 30.2 5.3 82 34-132 107-193 (239)
109 PRK13209 L-xylulose 5-phosphat 62.4 7.2 0.00016 32.6 2.8 20 111-130 23-43 (283)
110 PRK08195 4-hyroxy-2-oxovalerat 61.8 61 0.0013 28.4 8.6 52 109-178 144-196 (337)
111 TIGR02402 trehalose_TreZ malto 61.6 64 0.0014 30.2 9.1 108 37-168 159-270 (542)
112 PLN02979 glycolate oxidase 61.3 13 0.00027 33.3 4.2 65 97-176 208-283 (366)
113 PRK05835 fructose-bisphosphate 60.9 65 0.0014 28.1 8.4 83 36-166 26-127 (307)
114 PRK12857 fructose-1,6-bisphosp 60.8 98 0.0021 26.6 9.5 82 36-165 27-126 (284)
115 cd08597 PI-PLCc_PRIP_metazoa C 60.1 24 0.00053 30.0 5.6 57 116-178 36-95 (260)
116 cd08205 RuBisCO_IV_RLP Ribulos 59.9 36 0.00078 30.3 6.9 59 109-178 146-205 (367)
117 PRK06806 fructose-bisphosphate 59.8 1.1E+02 0.0024 26.2 9.6 92 36-166 27-127 (281)
118 COG3623 SgaU Putative L-xylulo 59.6 13 0.00027 31.5 3.6 18 111-128 20-37 (287)
119 cd00945 Aldolase_Class_I Class 59.6 29 0.00064 26.7 5.7 19 111-129 15-34 (201)
120 KOG2335 tRNA-dihydrouridine sy 59.5 11 0.00024 33.5 3.4 66 109-184 86-156 (358)
121 PLN02361 alpha-amylase 59.4 1.2E+02 0.0026 27.4 10.2 25 37-61 75-101 (401)
122 TIGR00542 hxl6Piso_put hexulos 59.1 9 0.0002 32.0 2.8 20 111-130 18-38 (279)
123 cd08210 RLP_RrRLP Ribulose bis 58.7 27 0.00058 31.1 5.8 58 110-178 142-200 (364)
124 cd00947 TBP_aldolase_IIB Tagat 58.6 1.1E+02 0.0023 26.2 9.3 83 36-166 22-122 (276)
125 PRK01060 endonuclease IV; Prov 56.8 10 0.00023 31.6 2.8 20 111-130 14-34 (281)
126 cd03327 MR_like_2 Mandelate ra 56.2 48 0.001 28.8 7.0 52 110-175 123-175 (341)
127 cd07940 DRE_TIM_IPMS 2-isoprop 56.0 1.2E+02 0.0026 25.3 9.4 27 34-60 110-136 (268)
128 PRK13210 putative L-xylulose 5 54.9 12 0.00025 31.2 2.8 19 112-130 19-38 (284)
129 cd00019 AP2Ec AP endonuclease 54.6 11 0.00025 31.4 2.7 22 110-131 11-33 (279)
130 cd07944 DRE_TIM_HOA_like 4-hyd 54.6 1.1E+02 0.0023 25.8 8.6 29 34-62 105-133 (266)
131 PRK05286 dihydroorotate dehydr 54.0 57 0.0012 28.6 7.1 64 110-175 226-293 (344)
132 cd07302 CHD cyclase homology d 53.8 62 0.0013 24.0 6.5 67 98-167 18-86 (177)
133 COG4948 L-alanine-DL-glutamate 53.3 42 0.00092 29.4 6.2 49 108-178 144-193 (372)
134 PRK08227 autoinducer 2 aldolas 51.8 55 0.0012 27.9 6.4 55 34-128 123-177 (264)
135 cd02810 DHOD_DHPD_FMN Dihydroo 51.6 75 0.0016 26.6 7.3 64 110-175 177-247 (289)
136 cd00408 DHDPS-like Dihydrodipi 51.5 91 0.002 26.0 7.8 28 37-64 17-44 (281)
137 KOG0134 NADH:flavin oxidoreduc 51.3 8.1 0.00018 34.9 1.3 64 2-67 66-134 (400)
138 PF02605 PsaL: Photosystem I r 50.6 1.5 3.3E-05 34.2 -2.9 20 125-144 45-68 (153)
139 PRK09250 fructose-bisphosphate 50.6 53 0.0012 29.2 6.3 61 34-128 175-236 (348)
140 cd08627 PI-PLCc_gamma1 Catalyt 50.6 35 0.00076 28.5 4.9 61 113-178 33-95 (229)
141 PRK08185 hypothetical protein; 50.5 1.6E+02 0.0036 25.2 9.5 81 36-165 22-120 (283)
142 smart00812 Alpha_L_fucos Alpha 50.4 35 0.00077 30.5 5.3 63 114-182 86-153 (384)
143 TIGR01515 branching_enzym alph 50.4 2.3E+02 0.005 26.9 13.0 126 37-168 205-341 (613)
144 KOG4654 Uncharacterized conser 50.4 9.1 0.0002 31.2 1.4 33 96-128 190-222 (252)
145 PRK13125 trpA tryptophan synth 49.9 65 0.0014 26.6 6.5 49 108-168 17-74 (244)
146 TIGR03212 uraD_N-term-dom puta 49.9 54 0.0012 28.3 6.2 61 106-177 100-160 (297)
147 cd00946 FBP_aldolase_IIA Class 49.8 1.2E+02 0.0026 26.9 8.4 72 45-166 81-153 (345)
148 cd00950 DHDPS Dihydrodipicolin 49.6 92 0.002 26.1 7.5 28 37-64 20-47 (284)
149 PRK12331 oxaloacetate decarbox 49.5 48 0.001 30.4 6.0 53 96-168 20-74 (448)
150 PRK09856 fructoselysine 3-epim 49.5 16 0.00034 30.3 2.8 20 111-130 15-35 (275)
151 cd00954 NAL N-Acetylneuraminic 49.2 1E+02 0.0023 26.0 7.8 28 37-64 20-48 (288)
152 PRK07084 fructose-bisphosphate 49.0 1.5E+02 0.0032 26.1 8.7 82 36-165 33-137 (321)
153 PRK05458 guanosine 5'-monophos 48.8 64 0.0014 28.3 6.5 44 113-177 100-146 (326)
154 PRK03620 5-dehydro-4-deoxygluc 48.4 1.2E+02 0.0026 26.0 8.1 28 37-64 27-54 (303)
155 PRK04147 N-acetylneuraminate l 47.7 1.1E+02 0.0023 26.0 7.7 27 37-63 23-50 (293)
156 PRK07107 inosine 5-monophospha 47.7 48 0.0011 30.8 5.9 23 111-133 243-266 (502)
157 cd02811 IDI-2_FMN Isopentenyl- 47.6 46 0.001 29.0 5.5 21 112-132 192-213 (326)
158 cd00381 IMPDH IMPDH: The catal 47.6 59 0.0013 28.3 6.1 45 111-176 95-140 (325)
159 PF01085 HH_signal: Hedgehog a 47.5 19 0.0004 28.4 2.6 21 108-128 131-151 (160)
160 COG0854 PdxJ Pyridoxal phospha 47.3 1.4E+02 0.003 25.1 7.8 87 34-132 107-194 (243)
161 TIGR01859 fruc_bis_ald_ fructo 47.1 1.8E+02 0.0038 24.9 8.9 80 36-165 25-126 (282)
162 PRK05567 inosine 5'-monophosph 47.1 62 0.0014 29.8 6.5 29 102-130 258-299 (486)
163 cd00739 DHPS DHPS subgroup of 47.1 1.1E+02 0.0025 25.6 7.6 48 112-167 27-75 (257)
164 cd02940 DHPD_FMN Dihydropyrimi 46.9 1.2E+02 0.0026 25.8 7.9 36 95-130 233-283 (299)
165 PLN02849 beta-glucosidase 46.6 44 0.00096 31.1 5.4 82 32-142 113-204 (503)
166 PRK06852 aldolase; Validated 46.5 87 0.0019 27.3 6.9 58 34-128 150-207 (304)
167 cd03315 MLE_like Muconate lact 46.4 75 0.0016 26.4 6.4 46 110-178 88-134 (265)
168 cd06547 GH85_ENGase Endo-beta- 46.2 57 0.0012 28.8 5.8 19 41-59 49-67 (339)
169 PRK03170 dihydrodipicolinate s 46.1 1.2E+02 0.0026 25.6 7.7 28 37-64 21-48 (292)
170 TIGR01769 GGGP geranylgeranylg 46.0 63 0.0014 26.4 5.7 47 109-176 11-58 (205)
171 PF01261 AP_endonuc_2: Xylose 45.9 9 0.0002 29.7 0.7 20 116-135 2-22 (213)
172 PLN02814 beta-glucosidase 45.5 47 0.001 30.9 5.5 67 32-126 111-177 (504)
173 cd06542 GH18_EndoS-like Endo-b 45.4 1.7E+02 0.0037 24.0 11.7 101 37-178 50-152 (255)
174 PRK00115 hemE uroporphyrinogen 45.2 61 0.0013 28.2 5.9 75 103-178 47-144 (346)
175 PRK14705 glycogen branching en 45.2 3.4E+02 0.0075 28.4 11.8 120 37-167 814-949 (1224)
176 PLN02784 alpha-amylase 44.8 2.1E+02 0.0044 28.8 9.8 96 37-134 567-679 (894)
177 TIGR01464 hemE uroporphyrinoge 44.5 92 0.002 26.9 6.9 54 107-168 178-232 (338)
178 COG0167 PyrD Dihydroorotate de 44.2 1E+02 0.0022 26.9 7.0 65 108-174 172-244 (310)
179 PF00809 Pterin_bind: Pterin b 44.1 99 0.0022 25.0 6.6 52 114-176 24-77 (210)
180 COG0646 MetH Methionine syntha 43.7 75 0.0016 27.8 6.0 69 103-191 137-207 (311)
181 TIGR00674 dapA dihydrodipicoli 43.6 1.4E+02 0.0029 25.2 7.7 28 37-64 18-45 (285)
182 PF14871 GHL6: Hypothetical gl 43.5 77 0.0017 23.9 5.5 57 113-178 4-64 (132)
183 PF00128 Alpha-amylase: Alpha 43.2 27 0.0006 28.6 3.3 44 106-167 145-189 (316)
184 cd08591 PI-PLCc_beta Catalytic 43.2 56 0.0012 27.8 5.1 62 113-178 33-97 (257)
185 smart00642 Aamy Alpha-amylase 43.1 28 0.00061 27.2 3.1 27 37-63 69-97 (166)
186 TIGR02313 HpaI-NOT-DapA 2,4-di 42.9 1.6E+02 0.0036 25.0 8.1 27 37-63 20-46 (294)
187 PRK14041 oxaloacetate decarbox 42.9 72 0.0016 29.5 6.1 52 97-168 20-73 (467)
188 PF01120 Alpha_L_fucos: Alpha- 42.7 61 0.0013 28.4 5.5 63 115-182 97-163 (346)
189 COG0826 Collagenase and relate 42.6 1.2E+02 0.0026 26.9 7.3 20 39-58 50-69 (347)
190 cd08630 PI-PLCc_delta3 Catalyt 42.5 67 0.0015 27.3 5.5 60 113-178 33-95 (258)
191 COG4193 LytD Beta- N-acetylglu 42.3 16 0.00035 30.5 1.7 35 112-147 158-195 (245)
192 PLN02417 dihydrodipicolinate s 42.1 1.4E+02 0.0031 25.2 7.5 28 37-64 21-48 (280)
193 TIGR03558 oxido_grp_1 lucifera 42.1 36 0.00078 29.2 3.9 28 105-132 16-44 (323)
194 PRK06252 methylcobalamin:coenz 42.1 48 0.001 28.5 4.7 54 105-165 176-231 (339)
195 COG1082 IolE Sugar phosphate i 42.0 19 0.00042 29.5 2.2 23 112-135 18-41 (274)
196 TIGR01037 pyrD_sub1_fam dihydr 41.9 88 0.0019 26.5 6.3 59 110-168 170-234 (300)
197 PLN02998 beta-glucosidase 41.6 54 0.0012 30.4 5.2 82 32-142 116-207 (497)
198 TIGR00013 taut 4-oxalocrotonat 41.6 35 0.00076 21.6 2.9 41 148-188 13-58 (63)
199 TIGR00683 nanA N-acetylneurami 41.0 1.6E+02 0.0035 25.0 7.7 27 37-63 20-47 (290)
200 TIGR02631 xylA_Arthro xylose i 41.0 22 0.00047 31.8 2.4 21 111-131 34-55 (382)
201 PF00701 DHDPS: Dihydrodipicol 40.7 1.4E+02 0.0031 25.1 7.3 26 37-62 21-46 (289)
202 TIGR01303 IMP_DH_rel_1 IMP deh 40.4 45 0.00097 30.8 4.4 57 100-177 215-272 (475)
203 TIGR01305 GMP_reduct_1 guanosi 40.1 1.1E+02 0.0024 27.1 6.6 32 101-132 138-182 (343)
204 COG0167 PyrD Dihydroorotate de 40.0 1.2E+02 0.0025 26.6 6.7 59 108-179 108-170 (310)
205 PF08838 DUF1811: Protein of u 39.9 47 0.001 24.3 3.6 27 97-123 5-31 (102)
206 PLN02355 probable galactinol-- 39.7 2.3E+02 0.0049 28.0 9.1 55 104-167 369-424 (758)
207 TIGR00737 nifR3_yhdG putative 39.6 47 0.001 28.6 4.3 55 115-169 207-270 (319)
208 PRK10415 tRNA-dihydrouridine s 39.3 37 0.00081 29.4 3.6 58 112-169 207-272 (321)
209 PRK06520 5-methyltetrahydropte 39.2 2E+02 0.0043 25.5 8.2 87 102-190 163-254 (368)
210 PRK13695 putative NTPase; Prov 39.2 65 0.0014 24.8 4.7 56 108-164 112-173 (174)
211 PF00478 IMPDH: IMP dehydrogen 39.0 74 0.0016 28.3 5.4 45 112-177 110-155 (352)
212 cd03328 MR_like_3 Mandelate ra 38.9 1.1E+02 0.0024 26.7 6.5 44 111-175 142-186 (352)
213 cd00423 Pterin_binding Pterin 38.8 1.7E+02 0.0038 24.3 7.5 47 112-167 27-75 (258)
214 cd03324 rTSbeta_L-fuconate_deh 38.8 1E+02 0.0022 27.9 6.4 46 110-178 199-245 (415)
215 COG0191 Fba Fructose/tagatose 38.1 1.6E+02 0.0035 25.4 7.2 87 36-165 27-127 (286)
216 PRK05096 guanosine 5'-monophos 38.1 1.1E+02 0.0023 27.3 6.2 47 109-176 108-156 (346)
217 TIGR01949 AroFGH_arch predicte 38.0 1.4E+02 0.0031 24.8 6.8 23 34-56 119-141 (258)
218 cd08598 PI-PLC1c_yeast Catalyt 37.9 89 0.0019 26.1 5.4 59 114-178 34-95 (231)
219 COG1646 Predicted phosphate-bi 37.9 1E+02 0.0022 26.0 5.7 47 110-177 29-76 (240)
220 cd03321 mandelate_racemase Man 37.7 55 0.0012 28.6 4.4 48 109-178 143-191 (355)
221 cd02871 GH18_chitinase_D-like 37.6 2.6E+02 0.0057 23.9 11.4 21 38-58 60-80 (312)
222 cd03322 rpsA The starvation se 37.6 86 0.0019 27.5 5.7 39 110-178 129-168 (361)
223 cd08625 PI-PLCc_beta3 Catalyti 37.5 78 0.0017 26.9 5.1 63 112-178 32-97 (258)
224 PF15496 DUF4646: Domain of un 37.4 39 0.00084 25.3 3.0 45 123-167 17-67 (123)
225 cd04738 DHOD_2_like Dihydrooro 37.4 1.6E+02 0.0034 25.6 7.2 62 110-175 217-284 (327)
226 COG2513 PrpB PEP phosphonomuta 37.3 1E+02 0.0022 26.7 5.8 64 112-184 28-91 (289)
227 KOG4013 Predicted Cu2+ homeost 37.3 8.6 0.00019 31.6 -0.6 34 97-130 3-38 (255)
228 PF02662 FlpD: Methyl-viologen 37.2 28 0.0006 26.0 2.2 42 116-163 46-89 (124)
229 TIGR03217 4OH_2_O_val_ald 4-hy 36.7 2.9E+02 0.0063 24.1 9.1 51 109-177 143-194 (333)
230 cd03465 URO-D_like The URO-D _ 36.4 88 0.0019 26.6 5.5 58 102-166 161-220 (330)
231 cd02873 GH18_IDGF The IDGF's ( 36.1 1.8E+02 0.0039 26.2 7.6 70 108-178 106-193 (413)
232 PRK07807 inosine 5-monophospha 35.7 98 0.0021 28.6 5.9 57 99-176 216-273 (479)
233 cd00598 GH18_chitinase-like Th 35.7 1.4E+02 0.0031 23.3 6.2 49 117-178 99-148 (210)
234 cd00377 ICL_PEPM Members of th 35.5 1.5E+02 0.0032 24.7 6.5 56 109-178 84-149 (243)
235 PLN02826 dihydroorotate dehydr 35.4 1.6E+02 0.0034 26.7 7.0 63 105-179 200-270 (409)
236 PF01791 DeoC: DeoC/LacD famil 35.3 1.1E+02 0.0023 25.1 5.6 60 34-130 108-168 (236)
237 TIGR03841 F420_Rv3093c probabl 35.2 47 0.001 28.3 3.5 36 109-144 10-49 (301)
238 cd03326 MR_like_1 Mandelate ra 35.1 1.3E+02 0.0029 26.8 6.5 45 111-175 164-209 (385)
239 PRK09441 cytoplasmic alpha-amy 35.1 42 0.00092 30.7 3.4 27 37-63 80-108 (479)
240 PRK05692 hydroxymethylglutaryl 34.9 2.9E+02 0.0062 23.6 9.4 91 33-178 115-206 (287)
241 cd08623 PI-PLCc_beta1 Catalyti 34.7 93 0.002 26.5 5.1 62 114-178 34-97 (258)
242 cd01301 rDP_like renal dipepti 34.7 25 0.00054 30.5 1.7 112 38-184 154-267 (309)
243 KOG0538 Glycolate oxidase [Ene 34.3 57 0.0012 28.8 3.8 35 98-132 209-254 (363)
244 PF12327 FtsZ_C: FtsZ family, 34.2 43 0.00092 23.7 2.6 67 112-188 17-87 (95)
245 PRK07226 fructose-bisphosphate 33.9 2.2E+02 0.0047 23.9 7.3 23 34-56 122-144 (267)
246 cd00468 HIT_like HIT family: H 33.9 1.1E+02 0.0023 20.3 4.6 39 95-133 31-71 (86)
247 COG3246 Uncharacterized conser 33.6 2E+02 0.0043 25.1 6.9 53 98-169 25-77 (298)
248 TIGR00587 nfo apurinic endonuc 33.6 1.1E+02 0.0024 25.6 5.6 21 110-130 12-33 (274)
249 cd08624 PI-PLCc_beta2 Catalyti 33.6 98 0.0021 26.4 5.1 62 114-178 34-97 (261)
250 cd08628 PI-PLCc_gamma2 Catalyt 33.6 1.2E+02 0.0027 25.7 5.7 57 116-178 36-95 (254)
251 TIGR01108 oadA oxaloacetate de 33.2 1E+02 0.0022 29.3 5.7 61 97-177 16-78 (582)
252 cd08596 PI-PLCc_epsilon Cataly 33.1 1.3E+02 0.0028 25.6 5.7 61 113-178 33-95 (254)
253 cd08208 RLP_Photo Ribulose bis 32.5 61 0.0013 29.6 3.9 60 109-178 176-235 (424)
254 cd04733 OYE_like_2_FMN Old yel 31.7 2E+02 0.0044 24.9 7.0 58 110-176 237-297 (338)
255 TIGR01496 DHPS dihydropteroate 31.6 2.5E+02 0.0055 23.5 7.4 49 112-167 26-74 (257)
256 PF01116 F_bP_aldolase: Fructo 31.4 1E+02 0.0022 26.4 5.0 38 113-166 87-126 (287)
257 TIGR03560 F420_Rv1855c probabl 30.8 54 0.0012 26.8 3.1 25 107-131 11-36 (227)
258 cd00347 Flavin_utilizing_monox 30.7 54 0.0012 21.1 2.6 25 104-128 17-41 (90)
259 TIGR03006 pepcterm_polyde poly 30.7 1.5E+02 0.0033 25.0 5.9 24 34-57 24-47 (265)
260 KOG1503 Phosphoribosylpyrophos 30.6 71 0.0015 27.3 3.7 36 99-134 251-287 (354)
261 TIGR02102 pullulan_Gpos pullul 30.5 2.4E+02 0.0053 29.1 8.1 28 37-64 554-583 (1111)
262 cd08562 GDPD_EcUgpQ_like Glyce 30.5 45 0.00097 26.8 2.5 16 113-128 17-32 (229)
263 cd06556 ICL_KPHMT Members of t 30.4 1.9E+02 0.004 24.2 6.3 41 111-178 91-132 (240)
264 cd00480 malate_synt Malate syn 30.3 1.3E+02 0.0028 28.2 5.7 23 106-128 322-344 (511)
265 PF03740 PdxJ: Pyridoxal phosp 30.3 40 0.00087 28.4 2.2 17 112-128 25-41 (239)
266 cd08583 PI-PLCc_GDPD_SF_unchar 30.1 46 0.00099 27.2 2.5 16 113-128 19-34 (237)
267 COG3867 Arabinogalactan endo-1 30.1 4E+02 0.0086 23.7 10.9 118 36-178 102-222 (403)
268 PRK00745 4-oxalocrotonate taut 30.1 77 0.0017 19.9 3.2 42 148-189 13-59 (62)
269 cd00491 4Oxalocrotonate_Tautom 30.0 1E+02 0.0022 18.9 3.7 35 148-182 12-50 (58)
270 COG1891 Uncharacterized protei 29.9 1E+02 0.0022 25.1 4.3 51 113-182 11-64 (235)
271 smart00044 CYCc Adenylyl- / gu 29.9 2.4E+02 0.0052 21.7 6.6 69 97-166 52-121 (194)
272 cd08599 PI-PLCc_plant Catalyti 29.7 1.7E+02 0.0037 24.4 5.8 58 115-178 35-95 (228)
273 PRK09454 ugpQ cytoplasmic glyc 29.6 46 0.001 27.5 2.5 17 112-128 25-41 (249)
274 PRK14582 pgaB outer membrane N 29.2 84 0.0018 30.5 4.4 27 97-137 163-190 (671)
275 PF01487 DHquinase_I: Type I 3 29.2 77 0.0017 25.6 3.7 51 111-178 12-63 (224)
276 cd08564 GDPD_GsGDE_like Glycer 29.0 47 0.001 27.7 2.5 16 113-128 24-39 (265)
277 PLN02684 Probable galactinol-- 29.0 5.2E+02 0.011 25.6 9.6 54 105-167 361-415 (750)
278 PRK12568 glycogen branching en 28.8 5.7E+02 0.012 25.2 13.0 120 37-168 318-454 (730)
279 COG1659 Uncharacterized protei 28.8 50 0.0011 27.6 2.5 25 102-126 145-169 (267)
280 cd03131 GATase1_HTS Type 1 glu 28.7 82 0.0018 25.1 3.7 36 9-53 65-100 (175)
281 COG0826 Collagenase and relate 28.6 42 0.0009 29.7 2.1 42 94-147 142-190 (347)
282 cd08574 GDPD_GDE_2_3_6 Glycero 28.4 50 0.0011 27.4 2.5 15 114-128 21-35 (252)
283 PRK12581 oxaloacetate decarbox 28.4 2.1E+02 0.0046 26.5 6.8 62 96-177 29-92 (468)
284 PF02426 MIase: Muconolactone 28.4 1.1E+02 0.0024 21.7 4.0 29 95-123 11-39 (91)
285 cd01209 SHC SHC phosphotyrosin 28.4 53 0.0011 26.0 2.4 24 146-169 28-52 (160)
286 PRK00285 ihfA integration host 28.3 1.1E+02 0.0024 21.5 4.0 37 97-134 16-52 (99)
287 PF00150 Cellulase: Cellulase 28.2 75 0.0016 25.8 3.6 31 31-61 55-85 (281)
288 COG0329 DapA Dihydrodipicolina 28.2 1.2E+02 0.0025 26.1 4.8 62 111-187 27-90 (299)
289 PRK11613 folP dihydropteroate 28.1 3.4E+02 0.0074 23.3 7.6 47 112-167 41-89 (282)
290 cd08568 GDPD_TmGDE_like Glycer 27.9 52 0.0011 26.6 2.5 16 113-128 18-33 (226)
291 PRK12677 xylose isomerase; Pro 27.9 47 0.001 29.7 2.4 20 112-131 34-54 (384)
292 TIGR00559 pdxJ pyridoxine 5'-p 27.8 55 0.0012 27.5 2.6 17 112-128 24-40 (237)
293 TIGR02103 pullul_strch alpha-1 27.8 2.9E+02 0.0063 27.9 7.9 30 35-64 401-432 (898)
294 PF00232 Glyco_hydro_1: Glycos 27.7 98 0.0021 28.1 4.5 34 29-62 90-123 (455)
295 cd00003 PNPsynthase Pyridoxine 27.6 56 0.0012 27.4 2.6 17 112-128 24-40 (234)
296 PRK04081 hypothetical protein; 27.4 1.1E+02 0.0023 25.2 4.1 94 42-145 39-147 (207)
297 COG0296 GlgB 1,4-alpha-glucan 27.4 3.2E+02 0.007 26.3 7.9 92 37-137 213-312 (628)
298 TIGR02151 IPP_isom_2 isopenten 27.4 58 0.0012 28.4 2.8 21 112-132 193-214 (333)
299 PRK15452 putative protease; Pr 27.3 2.5E+02 0.0054 25.8 7.0 20 38-57 46-65 (443)
300 COG5309 Exo-beta-1,3-glucanase 27.3 3E+02 0.0064 23.9 6.9 84 96-184 146-243 (305)
301 COG1304 idi Isopentenyl diphos 27.2 74 0.0016 28.3 3.5 63 98-176 204-278 (360)
302 PRK08593 4-aminobutyrate amino 27.1 73 0.0016 28.9 3.5 38 95-132 407-444 (445)
303 PF01244 Peptidase_M19: Membra 27.0 18 0.0004 31.4 -0.4 114 38-184 160-275 (320)
304 PRK10785 maltodextrin glucosid 26.9 70 0.0015 30.3 3.5 28 37-64 225-254 (598)
305 PRK02412 aroD 3-dehydroquinate 26.9 2.3E+02 0.0049 23.6 6.3 51 113-178 32-83 (253)
306 PF10309 DUF2414: Protein of u 26.8 1.3E+02 0.0028 19.9 3.8 16 96-111 13-28 (62)
307 cd02872 GH18_chitolectin_chito 26.7 2.5E+02 0.0054 24.3 6.7 59 108-178 97-160 (362)
308 PRK05265 pyridoxine 5'-phospha 26.7 59 0.0013 27.4 2.6 17 112-128 27-43 (239)
309 PLN02433 uroporphyrinogen deca 26.6 2.6E+02 0.0057 24.3 6.8 52 107-167 177-230 (345)
310 PF01084 Ribosomal_S18: Riboso 26.6 81 0.0018 20.1 2.7 34 133-166 13-48 (54)
311 PRK14706 glycogen branching en 26.3 75 0.0016 30.5 3.5 123 37-168 216-350 (639)
312 cd08579 GDPD_memb_like Glycero 26.2 59 0.0013 26.1 2.5 16 113-128 17-32 (220)
313 KOG4233 DNA-bridging protein B 26.2 19 0.00042 25.2 -0.3 23 115-142 32-54 (90)
314 PF03060 NMO: Nitronate monoox 26.1 1.6E+02 0.0035 25.5 5.4 19 112-130 146-165 (330)
315 COG4277 Predicted DNA-binding 26.1 12 0.00026 32.9 -1.6 48 112-161 278-326 (404)
316 TIGR01463 mtaA_cmuA methyltran 26.1 1.4E+02 0.003 25.7 5.0 56 104-166 175-232 (340)
317 TIGR03842 F420_CPS_4043 F420-d 26.0 77 0.0017 27.4 3.4 25 108-132 12-37 (330)
318 PF14572 Pribosyl_synth: Phosp 25.7 69 0.0015 25.9 2.8 37 101-137 89-126 (184)
319 PRK07535 methyltetrahydrofolat 25.6 3.1E+02 0.0068 23.1 6.9 46 112-176 28-74 (261)
320 PF01188 MR_MLE: Mandelate rac 25.4 59 0.0013 21.1 2.0 16 159-175 1-16 (67)
321 TIGR03854 F420_MSMEG_3544 prob 25.4 85 0.0018 26.7 3.4 24 108-131 12-36 (290)
322 cd03311 CIMS_C_terminal_like C 25.3 4.3E+02 0.0094 22.6 9.2 67 102-178 148-215 (332)
323 PF13653 GDPD_2: Glycerophosph 25.3 72 0.0016 17.9 2.0 14 114-127 12-25 (30)
324 PLN02274 inosine-5'-monophosph 25.1 1.8E+02 0.004 27.0 5.8 22 112-133 250-272 (505)
325 TIGR02456 treS_nterm trehalose 25.0 85 0.0018 29.2 3.6 28 37-64 75-104 (539)
326 cd01095 Nitrilotriacetate_mono 25.0 81 0.0018 27.8 3.3 21 108-128 29-49 (358)
327 COG0584 UgpQ Glycerophosphoryl 25.0 61 0.0013 26.6 2.5 19 106-128 21-39 (257)
328 PF01361 Tautomerase: Tautomer 24.9 86 0.0019 19.6 2.6 41 148-188 12-57 (60)
329 KOG0626 Beta-glucosidase, lact 24.8 1.7E+02 0.0037 27.5 5.4 67 32-126 127-193 (524)
330 cd00465 URO-D_CIMS_like The UR 24.7 1E+02 0.0022 25.9 3.8 27 102-128 137-163 (306)
331 TIGR02104 pulA_typeI pullulana 24.7 73 0.0016 30.2 3.2 26 37-62 228-255 (605)
332 cd08565 GDPD_pAtGDE_like Glyce 24.5 65 0.0014 26.4 2.5 16 113-128 17-32 (235)
333 COG0274 DeoC Deoxyribose-phosp 24.5 83 0.0018 26.3 3.1 17 112-128 143-159 (228)
334 cd00959 DeoC 2-deoxyribose-5-p 24.4 2E+02 0.0044 22.9 5.3 48 113-176 73-121 (203)
335 COG2342 Predicted extracellula 24.3 1.5E+02 0.0033 25.7 4.7 65 102-177 122-192 (300)
336 COG2141 Coenzyme F420-dependen 24.3 67 0.0015 27.4 2.6 23 110-132 17-40 (336)
337 COG0696 GpmI Phosphoglyceromut 24.1 88 0.0019 29.2 3.4 34 35-68 124-158 (509)
338 cd03174 DRE_TIM_metallolyase D 24.1 3.9E+02 0.0085 21.6 8.7 85 34-177 111-196 (265)
339 PRK13378 protocatechuate 4,5-d 24.0 33 0.00071 25.7 0.6 25 130-158 22-46 (117)
340 TIGR03857 F420_MSMEG_2249 prob 24.0 89 0.0019 27.1 3.4 24 109-132 14-38 (329)
341 cd08581 GDPD_like_1 Glyceropho 23.9 68 0.0015 26.2 2.5 35 113-147 17-58 (229)
342 PRK09505 malS alpha-amylase; R 23.9 99 0.0021 30.0 3.9 28 37-64 291-320 (683)
343 TIGR00987 himA integration hos 23.8 1.8E+02 0.0039 20.3 4.4 36 97-133 15-50 (96)
344 cd06546 GH18_CTS3_chitinase GH 23.8 4.3E+02 0.0093 22.0 8.7 42 110-169 99-142 (256)
345 cd03309 CmuC_like CmuC_like. P 23.8 90 0.002 27.2 3.4 60 102-166 144-210 (321)
346 cd01097 Tetrahydromethanopteri 23.7 87 0.0019 24.6 3.0 18 111-128 17-34 (202)
347 TIGR01233 lacG 6-phospho-beta- 23.7 1.4E+02 0.0031 27.4 4.8 30 32-61 87-116 (467)
348 cd08207 RLP_NonPhot Ribulose b 23.6 1.1E+02 0.0025 27.7 4.0 60 109-178 159-218 (406)
349 PRK11702 hypothetical protein; 23.6 72 0.0016 23.5 2.3 30 96-125 30-59 (108)
350 cd01094 Alkanesulfonate_monoxy 23.5 87 0.0019 25.6 3.1 24 108-131 27-51 (244)
351 PF00296 Bac_luciferase: Lucif 23.5 98 0.0021 25.8 3.5 27 106-132 20-47 (307)
352 PF15059 Speriolin_C: Sperioli 23.4 3.6E+02 0.0078 21.0 6.8 45 94-138 43-88 (146)
353 PF03932 CutC: CutC family; I 23.3 83 0.0018 25.7 2.8 18 112-129 10-27 (201)
354 PRK02220 4-oxalocrotonate taut 23.2 1.1E+02 0.0025 19.0 3.0 22 148-169 13-34 (61)
355 PRK11572 copper homeostasis pr 23.2 2.4E+02 0.0052 23.9 5.6 19 112-130 11-30 (248)
356 cd08580 GDPD_Rv2277c_like Glyc 23.2 71 0.0015 27.0 2.5 35 113-147 19-60 (263)
357 COG0309 HypE Hydrogenase matur 23.2 1E+02 0.0022 27.3 3.6 24 95-118 98-121 (339)
358 PRK06806 fructose-bisphosphate 23.1 96 0.0021 26.5 3.3 30 33-62 110-139 (281)
359 PF01645 Glu_synthase: Conserv 23.1 1.9E+02 0.0042 25.9 5.3 37 97-133 183-239 (368)
360 cd08626 PI-PLCc_beta4 Catalyti 23.1 2E+02 0.0043 24.5 5.1 63 113-178 33-97 (257)
361 PLN02960 alpha-amylase 23.1 89 0.0019 31.3 3.4 28 37-64 465-494 (897)
362 PLN02424 ketopantoate hydroxym 23.1 2.5E+02 0.0054 24.9 5.9 23 109-131 113-137 (332)
363 COG0502 BioB Biotin synthase a 23.1 1.8E+02 0.0039 25.8 5.0 56 97-178 82-141 (335)
364 cd07925 LigA_like_1 The A subu 23.0 34 0.00074 25.2 0.5 24 131-158 12-35 (106)
365 smart00685 DM14 Repeats in fly 23.0 1.3E+02 0.0028 19.7 3.2 20 103-122 3-22 (59)
366 PRK13511 6-phospho-beta-galact 22.9 1.4E+02 0.0031 27.4 4.6 31 32-62 88-118 (469)
367 PF13547 GTA_TIM: GTA TIM-barr 22.9 89 0.0019 27.1 3.0 66 106-184 5-73 (299)
368 TIGR03860 FMN_nitrolo FMN-depe 22.6 89 0.0019 28.2 3.2 25 108-132 28-53 (422)
369 TIGR01769 GGGP geranylgeranylg 22.6 2.4E+02 0.0051 23.0 5.4 48 107-178 135-183 (205)
370 cd08632 PI-PLCc_eta1 Catalytic 22.6 2.1E+02 0.0045 24.3 5.1 61 113-178 33-95 (253)
371 COG0520 csdA Selenocysteine ly 22.5 1.4E+02 0.0029 27.0 4.3 28 36-63 177-204 (405)
372 TIGR03559 F420_Rv3520c probabl 22.5 97 0.0021 26.8 3.3 25 108-132 12-37 (325)
373 cd08629 PI-PLCc_delta1 Catalyt 22.5 2.1E+02 0.0045 24.4 5.2 60 113-178 33-95 (258)
374 PRK12330 oxaloacetate decarbox 22.5 2.3E+02 0.005 26.5 5.9 54 107-178 153-207 (499)
375 cd08206 RuBisCO_large_I_II_III 22.4 1.2E+02 0.0026 27.6 3.9 60 109-178 148-207 (414)
376 cd08567 GDPD_SpGDE_like Glycer 22.4 75 0.0016 26.0 2.5 16 113-128 19-34 (263)
377 PF01791 DeoC: DeoC/LacD famil 22.3 1.5E+02 0.0033 24.1 4.3 25 112-136 79-104 (236)
378 PRK05458 guanosine 5'-monophos 22.1 2.2E+02 0.0049 25.0 5.5 21 112-132 151-172 (326)
379 cd03320 OSBS o-Succinylbenzoat 22.1 3.3E+02 0.0071 22.5 6.4 44 113-178 88-132 (263)
380 cd08605 GDPD_GDE5_like_1_plant 22.1 77 0.0017 26.6 2.5 31 114-144 30-67 (282)
381 TIGR03858 LLM_2I7G probable ox 22.0 1.2E+02 0.0026 26.2 3.8 27 105-131 22-49 (337)
382 PF04179 Init_tRNA_PT: Initiat 21.9 3E+02 0.0064 25.4 6.4 26 100-128 144-169 (451)
383 cd01096 Alkanal_monooxygenase 21.9 1.2E+02 0.0027 25.8 3.9 27 105-131 18-45 (315)
384 PRK12569 hypothetical protein; 21.9 4.9E+02 0.011 22.0 9.1 94 37-167 46-140 (245)
385 cd08566 GDPD_AtGDE_like Glycer 21.8 79 0.0017 26.0 2.5 16 113-128 19-34 (240)
386 cd08148 RuBisCO_large Ribulose 21.8 1.3E+02 0.0028 26.9 4.0 60 109-178 143-202 (366)
387 PRK12330 oxaloacetate decarbox 21.7 3.1E+02 0.0067 25.7 6.5 61 97-177 22-84 (499)
388 PRK14847 hypothetical protein; 21.6 4.6E+02 0.01 23.1 7.3 49 105-169 147-202 (333)
389 TIGR02368 dimeth_PyL dimethyla 21.6 87 0.0019 26.9 2.7 48 109-156 337-391 (466)
390 cd08556 GDPD Glycerophosphodie 21.3 86 0.0019 23.9 2.5 54 113-166 17-88 (189)
391 PRK12737 gatY tagatose-bisphos 21.3 1.2E+02 0.0027 26.0 3.6 30 33-62 110-139 (284)
392 KOG0177 20S proteasome, regula 21.3 1.6E+02 0.0034 24.1 3.9 57 126-182 125-187 (200)
393 TIGR03856 F420_MSMEG_2906 prob 21.3 1.2E+02 0.0026 25.3 3.5 20 109-128 16-35 (249)
394 cd08594 PI-PLCc_eta Catalytic 21.1 2.3E+02 0.005 23.6 5.1 61 113-178 33-95 (227)
395 PF00586 AIRS: AIR synthase re 21.0 1.6E+02 0.0035 20.2 3.6 23 96-118 65-87 (96)
396 TIGR00126 deoC deoxyribose-pho 21.0 2.6E+02 0.0056 22.9 5.3 47 114-176 75-122 (211)
397 PF03009 GDPD: Glycerophosphor 20.9 89 0.0019 24.8 2.6 15 114-128 15-29 (256)
398 TIGR01036 pyrD_sub2 dihydrooro 20.9 4.5E+02 0.0098 22.9 7.2 65 110-177 225-295 (335)
399 cd00408 DHDPS-like Dihydrodipi 20.8 2.2E+02 0.0047 23.7 5.0 59 98-178 14-73 (281)
400 cd08570 GDPD_YPL206cp_fungi Gl 20.8 87 0.0019 25.4 2.5 56 113-168 17-97 (234)
401 COG1850 RbcL Ribulose 1,5-bisp 20.7 2.2E+02 0.0048 25.9 5.2 54 107-169 169-222 (429)
402 TIGR03356 BGL beta-galactosida 20.7 1.6E+02 0.0034 26.7 4.4 32 31-62 87-118 (427)
403 PRK02714 O-succinylbenzoate sy 20.7 3.6E+02 0.0078 23.2 6.5 47 110-178 121-168 (320)
404 cd00429 RPE Ribulose-5-phospha 20.7 1.3E+02 0.0028 23.6 3.4 23 110-132 13-36 (211)
405 TIGR03555 F420_mer 5,10-methyl 20.6 1.1E+02 0.0025 26.2 3.4 24 108-131 11-35 (325)
406 PRK00199 ihfB integration host 20.5 1.7E+02 0.0038 20.2 3.7 37 97-134 15-51 (94)
407 COG3325 ChiA Chitinase [Carboh 20.4 1.2E+02 0.0026 27.8 3.5 29 98-128 144-173 (441)
408 TIGR00674 dapA dihydrodipicoli 20.4 2.4E+02 0.0051 23.7 5.2 60 97-178 14-74 (285)
409 PRK10508 hypothetical protein; 20.3 1.4E+02 0.0031 26.0 3.9 28 105-132 23-51 (333)
410 PLN03244 alpha-amylase; Provis 20.3 1E+02 0.0022 30.7 3.2 28 37-64 440-469 (872)
411 cd08609 GDPD_GDE3 Glycerophosp 20.3 81 0.0018 27.4 2.3 15 114-128 46-60 (315)
412 TIGR03621 F420_MSMEG_2516 prob 20.2 1.2E+02 0.0027 25.9 3.4 24 108-131 13-37 (295)
413 cd07943 DRE_TIM_HOA 4-hydroxy- 20.2 3.8E+02 0.0082 22.2 6.4 26 36-61 110-135 (263)
414 COG1489 SfsA DNA-binding prote 20.2 2.1E+02 0.0045 24.1 4.6 16 110-128 193-208 (235)
415 COG0069 GltB Glutamate synthas 20.2 2.4E+02 0.0052 26.3 5.4 43 97-139 283-345 (485)
416 COG5016 Pyruvate/oxaloacetate 20.1 3E+02 0.0065 25.4 5.8 52 107-178 154-206 (472)
417 PRK03705 glycogen debranching 20.1 1E+02 0.0022 29.7 3.2 28 36-63 240-269 (658)
418 cd08612 GDPD_GDE4 Glycerophosp 20.0 88 0.0019 26.7 2.5 15 114-128 46-60 (300)
419 PF08902 DUF1848: Domain of un 20.0 2.3E+02 0.005 24.3 4.9 37 96-138 172-210 (266)
No 1
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=100.00 E-value=5.4e-58 Score=401.39 Aligned_cols=183 Identities=29% Similarity=0.503 Sum_probs=164.6
Q ss_pred CccccCC-ccEEEeCCceeCCCCCCCCCCccCCCHHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCcccc
Q 036028 1 MLKRTTN-GGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISS 79 (193)
Q Consensus 1 y~~rA~G-~GlIi~~~~~V~~~~~~~~~~~~i~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~p 79 (193)
|++||+| +||||+|.+.|++.++.+++++++|+|+++++|++++++||++|+++++||+|+||++..... ....+++|
T Consensus 45 y~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~i~~~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~-~~~~~vap 123 (363)
T COG1902 45 YAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSDAQIPGLKRLTEAVHAHGAKIFIQLWHAGRKARASHP-WLPSAVAP 123 (363)
T ss_pred HHHHhcCCCCEEEEeeEeeCcccccCCCCCccCChhHhHHHHHHHHHHHhcCCeEEEEeccCccccccccc-CCCcccCC
Confidence 7899998 799999999999999999999999999999999999999999999999999999999765431 12568899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC-----Chhhhh
Q 036028 80 TNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR-----SYKQRK 153 (193)
Q Consensus 80 S~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt-----s~eNR~ 153 (193)
|+++... + ....|++||++||+++|++|++||+||++|||||||| +||||||+|||||.+|+|| |+|||+
T Consensus 124 S~~~~~~---~-~~~~pr~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~ 199 (363)
T COG1902 124 SAIPAPG---G-RRATPRELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRA 199 (363)
T ss_pred Ccccccc---C-CCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHH
Confidence 9877652 1 1357999999999999999999999999999999999 9999999999999999999 999999
Q ss_pred hHHHHHHHHHHHhcCCCCCcEEEEc-CcCC-CC-Ccccc
Q 036028 154 RLRQDRVERLHQWQEPPPPPFLFSL-PTEW-DS-SISLT 189 (193)
Q Consensus 154 Rf~~Eii~aIR~~vg~~~~~~~~ri-~~e~-~~-~~~~~ 189 (193)
||++||+++||+++|+ +++|++|| ++|| .+ +.+++
T Consensus 200 Rf~~EVv~aVr~~vg~-~~~vg~Rls~~d~~~~~g~~~~ 237 (363)
T COG1902 200 RFLLEVVDAVREAVGA-DFPVGVRLSPDDFFDGGGLTIE 237 (363)
T ss_pred HHHHHHHHHHHHHhCC-CceEEEEECccccCCCCCCCHH
Confidence 9999999999999998 59999999 8888 44 44443
No 2
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=100.00 E-value=1.4e-57 Score=397.05 Aligned_cols=187 Identities=31% Similarity=0.527 Sum_probs=154.7
Q ss_pred CccccCC-ccEEEeCCceeCCCCCCCCCCccCCCHHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCcccc
Q 036028 1 MLKRTTN-GGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISS 79 (193)
Q Consensus 1 y~~rA~G-~GlIi~~~~~V~~~~~~~~~~~~i~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~p 79 (193)
|++||+| +||||+|+++|++.+..+++++++|+|+++++||+++++||++|+++++||+|+|+++.+.. ....+++|
T Consensus 42 y~~rA~GG~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~~vh~~Ga~i~~QL~H~G~~~~~~~--~~~~~~~p 119 (341)
T PF00724_consen 42 YERRAKGGAGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLKKLADAVHAHGAKIIAQLWHAGRQANPEY--SGDPPVGP 119 (341)
T ss_dssp HHHHHHTTTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHHHHHHHHHHTTSEEEEEEE--GGGSSGCC--SGGGCEES
T ss_pred HHHHhhcCCceEEecccccccccccccccchhchhhHHHHHHHHHHHHHhcCccceeeccccccccCccc--CCCCccCc
Confidence 6899997 79999999999999999999999999999999999999999999999999999999998775 33444677
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC-----Chhhhh
Q 036028 80 TNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR-----SYKQRK 153 (193)
Q Consensus 80 S~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt-----s~eNR~ 153 (193)
|+....+........++++||.+||+++|++|++||+||++|||||||| +||||||+|||||.+|+|| |+|||+
T Consensus 120 sa~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~ 199 (341)
T PF00724_consen 120 SAPSALPSPIKFMGYPPREMTEEEIEEIIEDFAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRA 199 (341)
T ss_dssp SCSSSSSTTTTETSCEEEE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHH
T ss_pred ccccccCcccccCCCCCeeCCHHHHHHHHHHHHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhh
Confidence 7433221000001134599999999999999999999999999999999 9999999999999999999 999999
Q ss_pred hHHHHHHHHHHHhcCCCCCcEEEEc-CcCC-CCCccccc
Q 036028 154 RLRQDRVERLHQWQEPPPPPFLFSL-PTEW-DSSISLTG 190 (193)
Q Consensus 154 Rf~~Eii~aIR~~vg~~~~~~~~ri-~~e~-~~~~~~~~ 190 (193)
||++|||++||++||+ +++|.+|| +.|+ .++++++.
T Consensus 200 Rf~~Eii~aIr~~vg~-d~~v~~Rls~~~~~~~g~~~~e 237 (341)
T PF00724_consen 200 RFLLEIIEAIREAVGP-DFPVGVRLSPDDFVEGGITLEE 237 (341)
T ss_dssp HHHHHHHHHHHHHHTG-GGEEEEEEETTCSSTTSHHSHH
T ss_pred HHHHHHHHHHHHHhcC-CceEEEEEeeecccCCCCchHH
Confidence 9999999999999998 59999999 7776 55666654
No 3
>PLN02411 12-oxophytodienoate reductase
Probab=100.00 E-value=1.1e-55 Score=391.34 Aligned_cols=176 Identities=43% Similarity=0.679 Sum_probs=155.1
Q ss_pred CccccCCccEEEeCCceeCCCCCCCCCCccCCCHHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccC
Q 036028 1 MLKRTTNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISST 80 (193)
Q Consensus 1 y~~rA~G~GlIi~~~~~V~~~~~~~~~~~~i~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS 80 (193)
|++||+|+||||+|+++|++.+..+++++++|+|+++++||+|+++||++|+++++||+|+||++.+.+.+.+..+++||
T Consensus 50 y~~rA~gGGLIIte~~~V~~~g~~~~~~~gi~~d~~i~~~~~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s 129 (391)
T PLN02411 50 YAQRSTPGGFLISEGTLISPTAPGFPHVPGIYSDEQVEAWKKVVDAVHAKGSIIFCQLWHVGRASHQVYQPGGAAPISST 129 (391)
T ss_pred HHHHHcCCCEEEeCceEECcccCcCCCCCccCCHHHHHHHHHHHHHHHhcCCEEEEeccCCCCCCccccccCCCCccCCc
Confidence 78999977999999999999999999999999999999999999999999999999999999998765422345677777
Q ss_pred CCCCCC-----CCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC-----
Q 036028 81 NKGVTP-----GLDG--QDWSSPRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR----- 147 (193)
Q Consensus 81 ~~~~~~-----~~~g--~~~~~~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt----- 147 (193)
.++... .+.+ .....|++||++||+++|++|++||+||++|||||||| +||||||+|||||.+|+||
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGG 209 (391)
T PLN02411 130 NKPISERWRILMPDGSYGKYPKPRALETSEIPEVVEHYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGG 209 (391)
T ss_pred cccccCCcccccCCccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCC
Confidence 653221 0011 01246899999999999999999999999999999999 9999999999999999999
Q ss_pred ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 148 SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 148 s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
|+|||+||++|||++||++||+ ++ |.+||
T Consensus 210 SlENR~RF~lEIi~aVr~~vg~-d~-vgvRi 238 (391)
T PLN02411 210 SIENRCRFLMQVVQAVVSAIGA-DR-VGVRV 238 (391)
T ss_pred CHHHHhHHHHHHHHHHHHHcCC-Ce-EEEEE
Confidence 9999999999999999999998 46 99999
No 4
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=100.00 E-value=2.7e-55 Score=385.36 Aligned_cols=186 Identities=35% Similarity=0.536 Sum_probs=160.8
Q ss_pred CccccCCccEEEeCCceeCCCCCCCCCCccCCCHHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccC
Q 036028 1 MLKRTTNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISST 80 (193)
Q Consensus 1 y~~rA~G~GlIi~~~~~V~~~~~~~~~~~~i~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS 80 (193)
|++|| |+||||+|+++|++.+...++++++|+|+++++||+++++||++|+++++||+|+||++.....+.+.++++||
T Consensus 43 y~~rA-g~GLIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~lad~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS 121 (362)
T PRK10605 43 YRQRA-SAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPS 121 (362)
T ss_pred HHHHh-CCCEEEECceeeCcccccCCCCCcccCHHHHHHHHHHHHHHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCC
Confidence 67888 79999999999999999889999999999999999999999999999999999999998765432355689999
Q ss_pred CCCCCCCC-----CC----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC---
Q 036028 81 NKGVTPGL-----DG----QDWSSPRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR--- 147 (193)
Q Consensus 81 ~~~~~~~~-----~g----~~~~~~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt--- 147 (193)
+++..... .+ .....|++||.+||+++|++|++||+||++|||||||| +||||||+|||||.+|+||
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeY 201 (362)
T PRK10605 122 AINAGTRTSLRDENGQAIRVETSTPRALELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQY 201 (362)
T ss_pred CcCcCcccccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcC
Confidence 87653100 00 01246899999999999999999999999999999999 9999999999999999999
Q ss_pred --ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc-CcCC----CCCcccc
Q 036028 148 --SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL-PTEW----DSSISLT 189 (193)
Q Consensus 148 --s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri-~~e~----~~~~~~~ 189 (193)
|+|||+||++|||++||++||++ + |.+|| ++|+ .++++++
T Consensus 202 GGslENR~Rf~~Eiv~aVr~~vg~~-~-igvRis~~~~~~~~~~G~~~~ 248 (362)
T PRK10605 202 GGSVENRARLVLEVVDAGIAEWGAD-R-IGIRISPLGTFNNVDNGPNEE 248 (362)
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCCC-e-EEEEECCccccccCCCCCCHH
Confidence 99999999999999999999984 5 99999 6652 3355543
No 5
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=8.1e-54 Score=375.00 Aligned_cols=184 Identities=22% Similarity=0.313 Sum_probs=164.8
Q ss_pred CccccCCccEEEeCCceeCCCCCCCCCCccCCCHHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccC
Q 036028 1 MLKRTTNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISST 80 (193)
Q Consensus 1 y~~rA~G~GlIi~~~~~V~~~~~~~~~~~~i~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS 80 (193)
|++||+|+||||+|+++|++.+...++++++|+|+++++||+++|+||++|+++++||+|+||++.+... .+..+++||
T Consensus 41 y~~rA~g~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~-~~~~~~~ps 119 (353)
T cd04735 41 YQRRAGGVGMVITGATYVSPSGIGFEGGFSADDDSDIPGLRKLAQAIKSKGAKAILQIFHAGRMANPALV-PGGDVVSPS 119 (353)
T ss_pred HHHHhCCCCEEEECceEECcccCcCCCCceecChhhhHHHHHHHHHHHhCCCeEEEEecCCCCCCCcccc-CCCceecCC
Confidence 7889999999999999999999888999999999999999999999999999999999999999876542 245689999
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC-----Chhhhhh
Q 036028 81 NKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR-----SYKQRKR 154 (193)
Q Consensus 81 ~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt-----s~eNR~R 154 (193)
+++... . ....|++||.+||++++++|++||+||++|||||||| +||||||+|||||.+|+|| |+|||+|
T Consensus 120 ~~~~~~--~--~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r 195 (353)
T cd04735 120 AIAAFR--P--GAHTPRELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMR 195 (353)
T ss_pred CCcccC--C--CCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHH
Confidence 875321 1 1346899999999999999999999999999999999 9999999999999999999 9999999
Q ss_pred HHHHHHHHHHHhcC----CCCCcEEEEc-CcCC-CCCccccc
Q 036028 155 LRQDRVERLHQWQE----PPPPPFLFSL-PTEW-DSSISLTG 190 (193)
Q Consensus 155 f~~Eii~aIR~~vg----~~~~~~~~ri-~~e~-~~~~~~~~ 190 (193)
|++|||++||+++| + +++|.+|+ ++|+ .++++++.
T Consensus 196 ~~~eii~~vr~~vg~~~~~-~~~v~~R~s~~~~~~~g~~~ee 236 (353)
T cd04735 196 FPLAVVKAVQEVIDKHADK-DFILGYRFSPEEPEEPGIRMED 236 (353)
T ss_pred HHHHHHHHHHHHhccccCC-CceEEEEECcccccCCCCCHHH
Confidence 99999999999999 6 69999999 6665 55776643
No 6
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=100.00 E-value=4.2e-53 Score=372.54 Aligned_cols=178 Identities=16% Similarity=0.193 Sum_probs=158.0
Q ss_pred CccccCC-ccEEEeCCceeCCCCCCCCC-CccCCCHHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccc
Q 036028 1 MLKRTTN-GGFLIAEATGVFDTVQGYPN-TPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPIS 78 (193)
Q Consensus 1 y~~rA~G-~GlIi~~~~~V~~~~~~~~~-~~~i~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~ 78 (193)
|++||+| +||||+|+++|++.+...++ ++++|+|+++++||+++++||++|+++++||+|+|+++.... .+..+++
T Consensus 44 ~~~rA~gG~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~G~~i~~QL~H~G~~~~~~~--~~~~~~~ 121 (370)
T cd02929 44 RGIKAEGGWGVVNTEQCSIHPSSDDTPRISARLWDDGDIRNLAAMTDAVHKHGALAGIELWHGGAHAPNRE--SRETPLG 121 (370)
T ss_pred HHHHhCCCceEEEEeeeEEccccccCcccCcCcCCHHHHHHHHHHHHHHHHCCCeEEEecccCCCCCCccC--CCCCccC
Confidence 4679997 69999999999999988777 799999999999999999999999999999999999886432 3456789
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC-----Chhhh
Q 036028 79 STNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR-----SYKQR 152 (193)
Q Consensus 79 pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt-----s~eNR 152 (193)
||.++.... ......|++||++||++++++|++||++|++|||||||| +||||||+|||||.+|+|| |+|||
T Consensus 122 ps~~~~~~~--~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR 199 (370)
T cd02929 122 PSQLPSEFP--TGGPVQAREMDKDDIKRVRRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENR 199 (370)
T ss_pred CCCCCCCcc--ccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhh
Confidence 998764310 001246899999999999999999999999999999999 9999999999999999999 99999
Q ss_pred hhHHHHHHHHHHHhcCCCCCcEEEEc-CcCCC
Q 036028 153 KRLRQDRVERLHQWQEPPPPPFLFSL-PTEWD 183 (193)
Q Consensus 153 ~Rf~~Eii~aIR~~vg~~~~~~~~ri-~~e~~ 183 (193)
+||++|||++||+++|+ +++|.+|+ ++|+.
T Consensus 200 ~Rf~~eii~aIr~~vg~-~~~v~vRls~~~~~ 230 (370)
T cd02929 200 ARFWRETLEDTKDAVGD-DCAVATRFSVDELI 230 (370)
T ss_pred hHHHHHHHHHHHHHcCC-CceEEEEecHHHhc
Confidence 99999999999999998 69999999 66653
No 7
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=7.6e-53 Score=366.79 Aligned_cols=184 Identities=23% Similarity=0.311 Sum_probs=161.6
Q ss_pred CccccCC-ccEEEeCCceeCCCCCCCC---CCccCCCHHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCc
Q 036028 1 MLKRTTN-GGFLIAEATGVFDTVQGYP---NTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAP 76 (193)
Q Consensus 1 y~~rA~G-~GlIi~~~~~V~~~~~~~~---~~~~i~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~ 76 (193)
|++||+| +||||+|+++|++.+..++ +++++|+|+++++||+|+++||++|+++++||+|+|+++.... +..+
T Consensus 41 y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~---~~~~ 117 (338)
T cd04733 41 YRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVLESGEDLEAFREWAAAAKANGALIWAQLNHPGRQSPAGL---NQNP 117 (338)
T ss_pred HHHHhCCCceEEEEeeEEECcccccCCCcCCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCcCCCccC---CCCC
Confidence 6889997 7999999999999998888 8999999999999999999999999999999999999987553 3357
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC-----Chh
Q 036028 77 ISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR-----SYK 150 (193)
Q Consensus 77 ~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt-----s~e 150 (193)
++||.++...... .....|++||.+||++++++|++||+||++|||||||| +||||||+|||||.+|+|| |+|
T Consensus 118 ~~ps~~~~~~~~~-~~~~~p~~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGsle 196 (338)
T cd04733 118 VAPSVALDPGGLG-KLFGKPRAMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLE 196 (338)
T ss_pred cCCCCCcCccccc-ccCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHH
Confidence 8898776542100 11346899999999999999999999999999999999 9999999999999999999 999
Q ss_pred hhhhHHHHHHHHHHHhcCCCCCcEEEEc-CcCC-CCCcccc
Q 036028 151 QRKRLRQDRVERLHQWQEPPPPPFLFSL-PTEW-DSSISLT 189 (193)
Q Consensus 151 NR~Rf~~Eii~aIR~~vg~~~~~~~~ri-~~e~-~~~~~~~ 189 (193)
||+||++|||++||+++|+ +++|.+|+ +.|+ .++++++
T Consensus 197 nR~rf~~EiI~aIR~avG~-d~~v~vris~~~~~~~g~~~e 236 (338)
T cd04733 197 NRARLLLEIYDAIRAAVGP-GFPVGIKLNSADFQRGGFTEE 236 (338)
T ss_pred HHHHHHHHHHHHHHHHcCC-CCeEEEEEcHHHcCCCCCCHH
Confidence 9999999999999999998 59999999 6665 3355543
No 8
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=100.00 E-value=1.1e-52 Score=366.71 Aligned_cols=182 Identities=18% Similarity=0.224 Sum_probs=164.1
Q ss_pred CccccCC-ccEEEeCCceeCCCCCCCCCCccCCCHHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCcccc
Q 036028 1 MLKRTTN-GGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISS 79 (193)
Q Consensus 1 y~~rA~G-~GlIi~~~~~V~~~~~~~~~~~~i~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~p 79 (193)
|++||+| +||||+|+++|++.++.+++++++|+|+++++||+|+++||++|+++++||+|+|+++.... .+.++++|
T Consensus 39 y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~g~~~~~Ql~H~G~~~~~~~--~~~~~~~p 116 (343)
T cd04734 39 HEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAVHAHGAVIMIQLTHLGRRGDGDG--SWLPPLAP 116 (343)
T ss_pred HHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHHHHHhcCCeEEEeccCCCcCcCccc--CCCcccCC
Confidence 7899997 79999999999999999999999999999999999999999999999999999999987433 35668899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC-----Chhhhh
Q 036028 80 TNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR-----SYKQRK 153 (193)
Q Consensus 80 S~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt-----s~eNR~ 153 (193)
|+++... . ...|++||.+||++++++|++||++|++|||||||| +||||||+|||||.+|+|| |+|||+
T Consensus 117 s~~~~~~--~---~~~~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~ 191 (343)
T cd04734 117 SAVPEPR--H---RAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRM 191 (343)
T ss_pred CCCCCCC--C---CCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHh
Confidence 9876542 1 346899999999999999999999999999999999 9999999999999999999 999999
Q ss_pred hHHHHHHHHHHHhcCCCCCcEEEEc-CcCC-CCCccccc
Q 036028 154 RLRQDRVERLHQWQEPPPPPFLFSL-PTEW-DSSISLTG 190 (193)
Q Consensus 154 Rf~~Eii~aIR~~vg~~~~~~~~ri-~~e~-~~~~~~~~ 190 (193)
||++|||++||+++|+ +++|.+|+ +.|+ .+++|++.
T Consensus 192 r~~~eiv~~ir~~vg~-~~~v~iRl~~~~~~~~G~~~~e 229 (343)
T cd04734 192 RFLLEVLAAVRAAVGP-DFIVGIRISGDEDTEGGLSPDE 229 (343)
T ss_pred HHHHHHHHHHHHHcCC-CCeEEEEeehhhccCCCCCHHH
Confidence 9999999999999998 59999999 6665 44666643
No 9
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=1.9e-52 Score=366.79 Aligned_cols=171 Identities=25% Similarity=0.409 Sum_probs=153.0
Q ss_pred CccccCC-ccEEEeCCceeCCCCC-CCCCCccCCCHHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCC-CCCCCcc
Q 036028 1 MLKRTTN-GGFLIAEATGVFDTVQ-GYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQ-PNGKAPI 77 (193)
Q Consensus 1 y~~rA~G-~GlIi~~~~~V~~~~~-~~~~~~~i~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~-~~~~~~~ 77 (193)
|++||+| +||||+|++.|++.+. ..++++++|+|+++++||+++++||++|+++++||+|+||++..... ..+..++
T Consensus 39 y~~rA~GG~GlIite~~~V~~~~~~~~~~~~~~~~d~~i~~~~~l~d~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~ 118 (361)
T cd04747 39 YRRRAAGGVGLIITEGTAVDHPAASGDPNVPRFHGEDALAGWKKVVDEVHAAGGKIAPQLWHVGAMRKLGTPPFPDVPPL 118 (361)
T ss_pred HHHHhcCCccEEEecceEeccccccCCCCCCccCCHHHHHHHHHHHHHHHhcCCEEEEeccCCCCCcCcccCccCCCcee
Confidence 7889997 7999999999986654 44778899999999999999999999999999999999998765321 1244678
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC-----Chhh
Q 036028 78 SSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR-----SYKQ 151 (193)
Q Consensus 78 ~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt-----s~eN 151 (193)
+||+++... ...|++||++||++++++|++||++|++|||||||| +||||||+|||||.+|+|| |+||
T Consensus 119 ~ps~~~~~~------~~~p~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslen 192 (361)
T cd04747 119 SPSGLVGPG------KPVGREMTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAA 192 (361)
T ss_pred CCCCCCcCC------CCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHH
Confidence 999875431 246899999999999999999999999999999999 9999999999999999999 9999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 152 RKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 152 R~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
|+||++|||++||++||+ +|+|.+|+
T Consensus 193 R~Rf~~eii~air~~vG~-d~~v~vRi 218 (361)
T cd04747 193 RSRFAAEVVKAIRAAVGP-DFPIILRF 218 (361)
T ss_pred HHHHHHHHHHHHHHHcCC-CCeEEEEE
Confidence 999999999999999998 59999999
No 10
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=100.00 E-value=3.8e-52 Score=362.55 Aligned_cols=181 Identities=41% Similarity=0.641 Sum_probs=159.3
Q ss_pred CccccCCccEEEeCCceeCCCCCCCCCCccCCCHHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccC
Q 036028 1 MLKRTTNGGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISST 80 (193)
Q Consensus 1 y~~rA~G~GlIi~~~~~V~~~~~~~~~~~~i~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS 80 (193)
|++||+| ||||+|+++|++.+...++++++|+|+++++||+++++||++|+++++||+|+|+++.+...+.+..+++||
T Consensus 41 y~~rA~g-glIi~~~~~v~~~g~~~~~~~~l~~d~~i~~lr~la~~vh~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps 119 (338)
T cd02933 41 YAQRASA-GLIITEATQISPQGQGYPNTPGIYTDEQVEGWKKVTDAVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPS 119 (338)
T ss_pred HHHHhcC-ceEEeCceeeCccccCCCCCCccCCHHHHHHHHHHHHHHHhcCCeEEEEcccCccCCCcccccCCCCccCCC
Confidence 6889998 999999999999999999999999999999999999999999999999999999998765421245678999
Q ss_pred CCCCCCCC---CC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC-----Chh
Q 036028 81 NKGVTPGL---DG-QDWSSPRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR-----SYK 150 (193)
Q Consensus 81 ~~~~~~~~---~g-~~~~~~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt-----s~e 150 (193)
.++..... .+ .....|++||.+||++++++|++||++|++|||||||| +||||||+|||||.+|+|| |+|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGsle 199 (338)
T cd02933 120 AIAAEGKVFTPAGKVPYPTPRALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIE 199 (338)
T ss_pred CCCCCcccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHH
Confidence 87653200 00 01346899999999999999999999999999999999 9999999999999999999 999
Q ss_pred hhhhHHHHHHHHHHHhcCCCCCcEEEEc-CcCCCC
Q 036028 151 QRKRLRQDRVERLHQWQEPPPPPFLFSL-PTEWDS 184 (193)
Q Consensus 151 NR~Rf~~Eii~aIR~~vg~~~~~~~~ri-~~e~~~ 184 (193)
||+||++|||++||++||++ +|.+|+ +.|+.+
T Consensus 200 nR~rf~~eii~air~~vg~d--~v~vRis~~~~~~ 232 (338)
T cd02933 200 NRARFLLEVVDAVAEAIGAD--RVGIRLSPFGTFN 232 (338)
T ss_pred HhhhHHHHHHHHHHHHhCCC--ceEEEECccccCC
Confidence 99999999999999999974 499999 777754
No 11
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=100.00 E-value=3.3e-52 Score=362.74 Aligned_cols=176 Identities=21% Similarity=0.325 Sum_probs=158.5
Q ss_pred CccccCC-ccEEEeCCceeCCCCCCCCCCccCCCHHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCcccc
Q 036028 1 MLKRTTN-GGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISS 79 (193)
Q Consensus 1 y~~rA~G-~GlIi~~~~~V~~~~~~~~~~~~i~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~p 79 (193)
|++||+| +||||+|++.|++.+...++++++|+|+++++||+++++||++|+++++||+|+|+++... ..+++|
T Consensus 43 y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~-----~~~~~p 117 (337)
T PRK13523 43 YGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELE-----GDIVAP 117 (337)
T ss_pred HHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCCCCCCC-----CCccCC
Confidence 7899997 7999999999999999889999999999999999999999999999999999999986422 246899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC-----Chhhhh
Q 036028 80 TNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR-----SYKQRK 153 (193)
Q Consensus 80 S~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt-----s~eNR~ 153 (193)
|.++... . ...|++||.+||++++++|++||++|++|||||||| +||||||+|||||.+|+|| |+|||+
T Consensus 118 s~~~~~~--~---~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~ 192 (337)
T PRK13523 118 SAIPFDE--K---SKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRY 192 (337)
T ss_pred CCCCCCC--C---CCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHH
Confidence 9876542 1 246899999999999999999999999999999999 9999999999999999999 999999
Q ss_pred hHHHHHHHHHHHhcCCCCCcEEEEc-CcCCCC-Ccccc
Q 036028 154 RLRQDRVERLHQWQEPPPPPFLFSL-PTEWDS-SISLT 189 (193)
Q Consensus 154 Rf~~Eii~aIR~~vg~~~~~~~~ri-~~e~~~-~~~~~ 189 (193)
||++|||++||+++ +++|.+|| +.|+.. +++++
T Consensus 193 Rf~~eii~~ir~~~---~~~v~vRis~~d~~~~G~~~~ 227 (337)
T PRK13523 193 RFLREIIDAVKEVW---DGPLFVRISASDYHPGGLTVQ 227 (337)
T ss_pred HHHHHHHHHHHHhc---CCCeEEEecccccCCCCCCHH
Confidence 99999999999998 37899999 777644 66654
No 12
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=100.00 E-value=2.4e-51 Score=359.35 Aligned_cols=177 Identities=21% Similarity=0.269 Sum_probs=159.6
Q ss_pred CccccCC-ccEEEeCCceeCCCCCCCCCCccCCCHHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCcccc
Q 036028 1 MLKRTTN-GGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISS 79 (193)
Q Consensus 1 y~~rA~G-~GlIi~~~~~V~~~~~~~~~~~~i~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~p 79 (193)
|++||+| +||||+|+++|++.+..+++++++|+|+++++||+++++||++|+++++||+|+|+++... .+++|
T Consensus 39 y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~~~vh~~g~~~~~QL~h~G~~~~~~------~~~~p 112 (353)
T cd02930 39 YAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITDAVHAEGGKIALQILHAGRYAYHP------LCVAP 112 (353)
T ss_pred HHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHHHHHHHcCCEEEeeccCCCCCCCCC------CCcCC
Confidence 7899997 7999999999999999899999999999999999999999999999999999999987543 36788
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC-----Chhhhh
Q 036028 80 TNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR-----SYKQRK 153 (193)
Q Consensus 80 S~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt-----s~eNR~ 153 (193)
|+++... . ...|++||++||++++++|++||++|++|||||||| +||||||+|||||.+|+|| |+|||+
T Consensus 113 s~~~~~~--~---~~~p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~ 187 (353)
T cd02930 113 SAIRAPI--N---PFTPRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRM 187 (353)
T ss_pred CCCCCCC--C---CCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHh
Confidence 8875431 1 246899999999999999999999999999999999 9999999999999999999 999999
Q ss_pred hHHHHHHHHHHHhcCCCCCcEEEEc-CcCCC-CCcccc
Q 036028 154 RLRQDRVERLHQWQEPPPPPFLFSL-PTEWD-SSISLT 189 (193)
Q Consensus 154 Rf~~Eii~aIR~~vg~~~~~~~~ri-~~e~~-~~~~~~ 189 (193)
||++|||++||+++|+ +++|.+|+ +.|+. ++.+++
T Consensus 188 r~~~eiv~aIR~~vG~-d~~v~iRi~~~D~~~~g~~~~ 224 (353)
T cd02930 188 RFPVEIVRAVRAAVGE-DFIIIYRLSMLDLVEGGSTWE 224 (353)
T ss_pred HHHHHHHHHHHHHcCC-CceEEEEecccccCCCCCCHH
Confidence 9999999999999998 59999999 67764 455543
No 13
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=100.00 E-value=1e-50 Score=353.05 Aligned_cols=183 Identities=29% Similarity=0.436 Sum_probs=162.4
Q ss_pred CccccCC-ccEEEeCCceeCCCCCCCCCCccCCCHHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCC---------
Q 036028 1 MLKRTTN-GGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQ--------- 70 (193)
Q Consensus 1 y~~rA~G-~GlIi~~~~~V~~~~~~~~~~~~i~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~--------- 70 (193)
|++||+| +||||+|++.|++.+..+++++++|+|+++++||+|+|+||++|+++++||+|+||++.+...
T Consensus 39 y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~G~~~~~~~~~~~~~~~~~ 118 (336)
T cd02932 39 YGSRALGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFIHSQGAKIGIQLAHAGRKASTAPPWEGGGPLLP 118 (336)
T ss_pred HHHHHcCCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHHHHHhcCCcEEEEccCCCcCCCCCCCccccccccc
Confidence 7889997 799999999999999999999999999999999999999999999999999999999875431
Q ss_pred --CCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC
Q 036028 71 --PNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR 147 (193)
Q Consensus 71 --~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt 147 (193)
..+..+++||.++... ....|++||++||+++|++|++||++|++|||||||| +||||||+|||||.+|+|+
T Consensus 119 ~~~~~~~~~~ps~~~~~~-----~~~~p~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~ 193 (336)
T cd02932 119 PGGGGWQVVAPSAIPFDE-----GWPTPRELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRT 193 (336)
T ss_pred cccCCCceeCCCCCcCCC-----CCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCC
Confidence 0134678999876542 1356899999999999999999999999999999999 9999999999999999999
Q ss_pred -----ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc-CcCCCC-Ccccc
Q 036028 148 -----SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL-PTEWDS-SISLT 189 (193)
Q Consensus 148 -----s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri-~~e~~~-~~~~~ 189 (193)
|+|||+||++|||++||+++|+ +++|.+|+ +.|+.. +.+++
T Consensus 194 D~yGgsl~nr~rf~~eiv~aIR~~vG~-d~~v~vri~~~~~~~~g~~~~ 241 (336)
T cd02932 194 DEYGGSLENRMRFLLEVVDAVRAVWPE-DKPLFVRISATDWVEGGWDLE 241 (336)
T ss_pred cccCCCHHHHhHHHHHHHHHHHHHcCC-CceEEEEEcccccCCCCCCHH
Confidence 9999999999999999999998 59999999 666643 45543
No 14
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=5.9e-51 Score=352.18 Aligned_cols=180 Identities=29% Similarity=0.435 Sum_probs=162.3
Q ss_pred CccccCC-ccEEEeCCceeCCCCCCCCCCccCCCHHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCcccc
Q 036028 1 MLKRTTN-GGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISS 79 (193)
Q Consensus 1 y~~rA~G-~GlIi~~~~~V~~~~~~~~~~~~i~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~p 79 (193)
|++||+| +||||+|+++|++.+..+++++++|+|+++++||+++++||++|+++++||+|+||.+.+.. .+..+++|
T Consensus 39 y~~ra~gg~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~--~~~~~~~~ 116 (327)
T cd02803 39 YEERAKGGVGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNL--TGGPPPAP 116 (327)
T ss_pred HHHHhCcCCcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcC--CCCCccCC
Confidence 7899997 79999999999999999999999999999999999999999999999999999999988765 34567899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC-----Chhhhh
Q 036028 80 TNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR-----SYKQRK 153 (193)
Q Consensus 80 S~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt-----s~eNR~ 153 (193)
|.++... ....|++||.+||+++|++|++||++|++|||||||| ++||||++|||||.+|+|+ |+|||+
T Consensus 117 s~~~~~~-----~~~~~~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~ 191 (327)
T cd02803 117 SAIPSPG-----GGEPPREMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRA 191 (327)
T ss_pred CCCCCCC-----CCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHH
Confidence 8765431 1357899999999999999999999999999999999 9999999999999999999 999999
Q ss_pred hHHHHHHHHHHHhcCCCCCcEEEEc-CcCCC-CCccc
Q 036028 154 RLRQDRVERLHQWQEPPPPPFLFSL-PTEWD-SSISL 188 (193)
Q Consensus 154 Rf~~Eii~aIR~~vg~~~~~~~~ri-~~e~~-~~~~~ 188 (193)
||++|||++||+++|+ +++|.+|+ +.++. +++++
T Consensus 192 r~~~eii~avr~~~g~-d~~i~vris~~~~~~~g~~~ 227 (327)
T cd02803 192 RFLLEIVAAVREAVGP-DFPVGVRLSADDFVPGGLTL 227 (327)
T ss_pred HHHHHHHHHHHHHcCC-CceEEEEechhccCCCCCCH
Confidence 9999999999999998 59999999 65543 34443
No 15
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=100.00 E-value=2e-50 Score=356.84 Aligned_cols=176 Identities=23% Similarity=0.248 Sum_probs=152.6
Q ss_pred CccccCC-ccEEEeCCceeCCCCCC--CCC--CccCCCHHhHHhHHHHHHHHHhcCCeEEEcccCC-ccccCCCCCCCCC
Q 036028 1 MLKRTTN-GGFLIAEATGVFDTVQG--YPN--TPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHV-GRVSTFGLQPNGK 74 (193)
Q Consensus 1 y~~rA~G-~GlIi~~~~~V~~~~~~--~~~--~~~i~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~-G~~~~~~~~~~~~ 74 (193)
|++||+| +||||+|+++|++.+.. .++ ++.+++++++++||+++|+||++|+++++||+|+ ||++.+... .+.
T Consensus 41 y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~k~l~davh~~G~~i~~QL~H~~Gr~~~~~~~-~~~ 119 (382)
T cd02931 41 YVERAKGGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTAFIRTAKEMTERVHAYGTKIFLQLTAGFGRVCIPGFL-GED 119 (382)
T ss_pred HHHHhcCCCCEEEEEEEEeCCcccccCCCCccccccCCHHHhHHHHHHHHHHHHcCCEEEEEccCcCCCccCcccc-CCC
Confidence 7889997 79999999999987643 233 3456778899999999999999999999999997 999876542 235
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecc-hhhHHhhcCCCCCCCC-----
Q 036028 75 APISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNL-NYMLIFSIKSDVEGRR----- 147 (193)
Q Consensus 75 ~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ah-GyLl~qFlSp~~N~Rt----- 147 (193)
.+++||+++.+. .. ...|++||.+||+++|++|++||+||++|||||||| +|| ||||+|||||.+|+||
T Consensus 120 ~~~~ps~~~~~~--~~--~~~p~~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGG 195 (382)
T cd02931 120 KPVAPSPIPNRW--LP--EITCRELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGG 195 (382)
T ss_pred CccCCCCCCCCc--CC--CCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCC
Confidence 689999876542 10 246899999999999999999999999999999999 999 9999999999999999
Q ss_pred ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc-CcCC
Q 036028 148 SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL-PTEW 182 (193)
Q Consensus 148 s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri-~~e~ 182 (193)
|+|||+||++|||++||+++|+ +|+|.+|| +.||
T Consensus 196 slenR~rf~~eii~~vr~~~g~-~f~v~vri~~~~~ 230 (382)
T cd02931 196 SLENRLRFAIEIVEEIKARCGE-DFPVSLRYSVKSY 230 (382)
T ss_pred CHHHHhHHHHHHHHHHHHhcCC-CceEEEEEechhh
Confidence 9999999999999999999998 59999999 5543
No 16
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=100.00 E-value=4.1e-49 Score=374.21 Aligned_cols=184 Identities=26% Similarity=0.350 Sum_probs=163.3
Q ss_pred CccccCC-ccEEEeCCceeCCCCCCCCCCccCCCHHhHHhHHHHHHHHHhc-CCeEEEcccCCccccCCCCC--------
Q 036028 1 MLKRTTN-GGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQK-GGTFFCQLWHVGRVSTFGLQ-------- 70 (193)
Q Consensus 1 y~~rA~G-~GlIi~~~~~V~~~~~~~~~~~~i~~~~~i~~~~~l~~~vh~~-G~~i~~QL~h~G~~~~~~~~-------- 70 (193)
|++||+| +||||+|+++|++.++.+++++++|+|+++++||+++|+||++ |+++++||+|+||++.....
T Consensus 437 y~~rA~gG~glii~e~~~v~~~g~~~~~~~~~~~d~~i~~~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~ 516 (765)
T PRK08255 437 LGARALGGAGLVMTEMTCVSPEGRITPGCPGLYNDEQEAAWKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPL 516 (765)
T ss_pred HHHHHcCCCcEEEECCeEECCCcCCCCCCCccCCHHHHHHHHHHHHHHHhcCCceEEEEccCCccccccccccccccccc
Confidence 6889997 7999999999999999999999999999999999999999999 69999999999999864321
Q ss_pred -CCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC-
Q 036028 71 -PNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR- 147 (193)
Q Consensus 71 -~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt- 147 (193)
..+..+++||+++... + ...|++||++||+++|++|++||++|++|||||||| +||||||+|||||.+|+||
T Consensus 517 ~~~~~~~~~pS~~~~~~---~--~~~p~~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD 591 (765)
T PRK08255 517 EEGNWPLISASPLPYLP---G--SQVPREMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTD 591 (765)
T ss_pred ccCCCceeCCCCCcCCC---C--CCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCC
Confidence 0122568999876542 1 357899999999999999999999999999999999 9999999999999999999
Q ss_pred ----ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc-CcCCCC-Cccccc
Q 036028 148 ----SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL-PTEWDS-SISLTG 190 (193)
Q Consensus 148 ----s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri-~~e~~~-~~~~~~ 190 (193)
|+|||+||++||+++||+++|+ +++|.+|| +.||.+ +++++.
T Consensus 592 ~yGGslenR~r~~~eiv~~ir~~~~~-~~~v~~ri~~~~~~~~g~~~~~ 639 (765)
T PRK08255 592 EYGGSLENRLRYPLEVFRAVRAVWPA-EKPMSVRISAHDWVEGGNTPDD 639 (765)
T ss_pred CCCCCHHHHhHHHHHHHHHHHHhcCC-CCeeEEEEccccccCCCCCHHH
Confidence 9999999999999999999998 69999999 778854 566543
No 17
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=4e-35 Score=256.01 Aligned_cols=187 Identities=27% Similarity=0.436 Sum_probs=133.1
Q ss_pred ccccCC-ccEEEeCCceeCCCCCCCCCCccCCCHHhHHhHHHHHHHHHhcCCeEEEcccCCc---cccCCCCCCC-C---
Q 036028 2 LKRTTN-GGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG---RVSTFGLQPN-G--- 73 (193)
Q Consensus 2 ~~rA~G-~GlIi~~~~~V~~~~~~~~~~~~i~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G---~~~~~~~~~~-~--- 73 (193)
.+|..- +++||++++.+.+.+.+..+.+++|.|++.+.|+..+.++|+.++..++||||.+ +.+.....+. .
T Consensus 51 ~qr~g~Pt~~iI~~~~~~g~g~~G~i~t~nv~vdp~~~~~~~~~~~~~e~~~~~~~ql~~~~~~~~~~~~~~~~~~h~~~ 130 (400)
T KOG0134|consen 51 PQRHGLPTDFLINEYTKWGNGSFGYINTPNVWVDPQNEEWAGNVIAFHENDSFEFRQLWHLGAKLQDGALAVQQLSHAGR 130 (400)
T ss_pred hhhcCCCCceEEEeeccccCCCCceecCCceeecccccccCCceEEEecCCchHHHHHHHhhhhhhhhhhhHHhccCCcc
Confidence 344432 5788888888887777777778888888888888888888877777777777766 4332221111 1
Q ss_pred -------CCccccCCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCC
Q 036028 74 -------KAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQ-IVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVE 144 (193)
Q Consensus 74 -------~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~-ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N 144 (193)
..+++.|.+..+....+..+..|+.||++||++ |+|.|+.||+.+.+|||||||| +||||||+|||||.+|
T Consensus 131 q~~~~~~p~~~~a~~v~~~~~~~~~~~~~p~~l~~e~Ik~~V~Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~N 210 (400)
T KOG0134|consen 131 QTPCTVNPTPWGASDVQLPNAIRGVEFGKPKPLSKEQIKTEVVDRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTTN 210 (400)
T ss_pred ccccccCCCCCCHHhccCcccccchhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccchhhhhhccCCCC
Confidence 112222222111000111245689999999995 5566666777777999999999 9999999999999999
Q ss_pred CCC-----ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc-CcCCCC-Ccccc
Q 036028 145 GRR-----SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL-PTEWDS-SISLT 189 (193)
Q Consensus 145 ~Rt-----s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri-~~e~~~-~~~~~ 189 (193)
+|| |+|||+||++||+++||+++|+ ...+..++ ..+|++ +.|.+
T Consensus 211 dRtDeYGGSieNR~Rf~lEv~daVr~~Ip~-s~~~l~~~~~~~fq~~~~t~d 261 (400)
T KOG0134|consen 211 DRTDEYGGSIENRCRFPLEVVDAVRKEIPA-SRVFLRGSPTNEFQDIGITID 261 (400)
T ss_pred CcccccCcchhhhhhhhHHHHHHHHHhhcc-ccceEEecCchhhhhcccccc
Confidence 999 9999999999999999999998 46776666 457755 34443
No 18
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.97 E-value=8.4e-09 Score=88.26 Aligned_cols=116 Identities=13% Similarity=0.181 Sum_probs=88.0
Q ss_pred C-ccEEEeCCceeCCCC-CCCC----------CCccCCCHHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCC
Q 036028 7 N-GGFLIAEATGVFDTV-QGYP----------NTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGK 74 (193)
Q Consensus 7 G-~GlIi~~~~~V~~~~-~~~~----------~~~~i~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~ 74 (193)
| +|.|+++.+..++.. ...| +.+++.++.....++++.+..++.+.++++||...
T Consensus 33 g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~p~ivsi~g~------------- 99 (296)
T cd04740 33 GKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELLPWLREFGTPVIASIAGS------------- 99 (296)
T ss_pred CCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHHHHhhcCCCcEEEEEecC-------------
Confidence 5 799999998777542 1211 23345554444556666666666788899998410
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhHHhhcCCCCCCCC-Chhhhh
Q 036028 75 APISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRR-SYKQRK 153 (193)
Q Consensus 75 ~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rt-s~eNR~ 153 (193)
-+++|+++|++++++|||+|||- |.||.+|+|. ++.++.
T Consensus 100 --------------------------------~~~~~~~~a~~~~~~G~d~iElN--------~~cP~~~~~g~~~~~~~ 139 (296)
T cd04740 100 --------------------------------TVEEFVEVAEKLADAGADAIELN--------ISCPNVKGGGMAFGTDP 139 (296)
T ss_pred --------------------------------CHHHHHHHHHHHHHcCCCEEEEE--------CCCCCCCCCcccccCCH
Confidence 15789999999999999999992 3489999998 888899
Q ss_pred hHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 154 RLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 154 Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
+++.||+++||+.+ ++||.+|+
T Consensus 140 ~~~~eiv~~vr~~~---~~Pv~vKl 161 (296)
T cd04740 140 EAVAEIVKAVKKAT---DVPVIVKL 161 (296)
T ss_pred HHHHHHHHHHHhcc---CCCEEEEe
Confidence 99999999999998 38899998
No 19
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=98.97 E-value=8.9e-10 Score=90.52 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC-----ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 108 VNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR-----SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 108 i~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt-----s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
.++|+++|+++++||||+||| ++| |.+|.|+ +++||.+|+.|++++||+.++ ++|.+++
T Consensus 66 ~~~~~~aa~~~~~aG~d~ieln~g~---------p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~---~~v~vk~ 130 (231)
T cd02801 66 PETLAEAAKIVEELGADGIDLNMGC---------PSPKVTKGGAGAALLKDPELVAEIVRAVREAVP---IPVTVKI 130 (231)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCC---------CHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC---CCEEEEE
Confidence 578999999999999999999 875 7889998 899999999999999999987 4566655
No 20
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=98.59 E-value=8.2e-08 Score=83.93 Aligned_cols=58 Identities=16% Similarity=0.094 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC-----ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 109 NDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR-----SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt-----s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
+.|++||++++++|||+||| ++ .|..|.|+ +++||.+|+.||+++||++++ ++|.+++
T Consensus 77 ~~~~~aA~~~~~~g~d~IdlN~g---------CP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~---~pVsvKi 140 (333)
T PRK11815 77 ADLAEAAKLAEDWGYDEINLNVG---------CPSDRVQNGRFGACLMAEPELVADCVKAMKDAVS---IPVTVKH 140 (333)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCC---------CCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcC---CceEEEE
Confidence 67899999999999999999 76 48899988 899999999999999999984 5677654
No 21
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=98.58 E-value=7.9e-08 Score=83.33 Aligned_cols=57 Identities=18% Similarity=0.098 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC-----C-hhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 109 NDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR-----S-YKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt-----s-~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
+.|++||++++++|||+||| ++ +| .|+|+ | +.||.+|+.||+++||++++ ++|.+++
T Consensus 75 ~~~~~aa~~~~~~G~d~IelN~g---------cP-~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~---~pv~vKi 138 (319)
T TIGR00737 75 DTMAEAAKINEELGADIIDINMG---------CP-VPKITKKGAGSALLRDPDLIGKIVKAVVDAVD---IPVTVKI 138 (319)
T ss_pred HHHHHHHHHHHhCCCCEEEEECC---------CC-HHHhcCCCccchHhCCHHHHHHHHHHHHhhcC---CCEEEEE
Confidence 67899999999999999999 76 47 78888 4 68999999999999999985 6788887
No 22
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=98.53 E-value=1.8e-07 Score=81.17 Aligned_cols=62 Identities=15% Similarity=0.140 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC---ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 109 NDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR---SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt---s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
+.|++||++++++|||+||| ++| -+|..|++- .+.||.+++.||+++||+++++ +++|.+|+
T Consensus 75 ~~~~~aA~~~~~~g~d~IdiN~GC-------P~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~-~~pVsvKi 140 (312)
T PRK10550 75 QWLAENAARAVELGSWGVDLNCGC-------PSKTVNGSGGGATLLKDPELIYQGAKAMREAVPA-HLPVTVKV 140 (312)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCC-------CchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCC-CcceEEEE
Confidence 56899999999999999999 777 456666666 6999999999999999999986 48999998
No 23
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=98.50 E-value=1.2e-06 Score=75.16 Aligned_cols=114 Identities=11% Similarity=0.128 Sum_probs=75.4
Q ss_pred CccEEEeCCceeCCCC-CCCC----------CCccCCCHHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCC
Q 036028 7 NGGFLIAEATGVFDTV-QGYP----------NTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKA 75 (193)
Q Consensus 7 G~GlIi~~~~~V~~~~-~~~~----------~~~~i~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~ 75 (193)
|+|.|+++.+..++.. ...| |..++.+..--..++.+.+..++.+..+++||. |
T Consensus 36 g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~p~i~si~--g------------- 100 (301)
T PRK07259 36 GLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWLEEFDTPIIANVA--G------------- 100 (301)
T ss_pred CCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHHhccCCcEEEEec--c-------------
Confidence 5799999998777542 2211 122333332222344455555566778888873 1
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhC-CCeEEE-ecchhhHHhhcCCCCCCC-C-Chhh
Q 036028 76 PISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIEAG-DSNSDF-SNLNYMLIFSIKSDVEGR-R-SYKQ 151 (193)
Q Consensus 76 ~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA~~a~~AG-fDgVEI-~ahGyLl~qFlSp~~N~R-t-s~eN 151 (193)
. -.++|+++|++++++| ||+||| .. +|.. .. . .+.+
T Consensus 101 -------------~-----------------~~~~~~~~a~~~~~aG~~D~iElN~~---------cP~~-~~gg~~~~~ 140 (301)
T PRK07259 101 -------------S-----------------TEEEYAEVAEKLSKAPNVDAIELNIS---------CPNV-KHGGMAFGT 140 (301)
T ss_pred -------------C-----------------CHHHHHHHHHHHhccCCcCEEEEECC---------CCCC-CCCcccccc
Confidence 0 0478999999999999 999999 52 1111 01 1 4456
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 152 RKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 152 R~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
+.+|+.||+++||+++ +++|.+|+
T Consensus 141 ~~~~~~eiv~~vr~~~---~~pv~vKl 164 (301)
T PRK07259 141 DPELAYEVVKAVKEVV---KVPVIVKL 164 (301)
T ss_pred CHHHHHHHHHHHHHhc---CCCEEEEc
Confidence 7899999999999998 38999999
No 24
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=98.47 E-value=1.9e-06 Score=73.86 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=87.6
Q ss_pred CccEEEeCCceeCCCC-C----------CCCCCccCCCHHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCC
Q 036028 7 NGGFLIAEATGVFDTV-Q----------GYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKA 75 (193)
Q Consensus 7 G~GlIi~~~~~V~~~~-~----------~~~~~~~i~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~ 75 (193)
|+|+|+++.+...|.. . ..-+..++.++..-..++.+....|+++.++++||+ |
T Consensus 35 G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~~~~~~~pl~~qi~--g------------- 99 (300)
T TIGR01037 35 GAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPVREEFPTPLIASVY--G------------- 99 (300)
T ss_pred CCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHHhccCCCcEEEEee--c-------------
Confidence 5799999988877532 1 122344566655556677777778888889999984 1
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhC--CCeEEE-ecchhhHHhhcCCCCCCCC-Chhh
Q 036028 76 PISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIEAG--DSNSDF-SNLNYMLIFSIKSDVEGRR-SYKQ 151 (193)
Q Consensus 76 ~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA~~a~~AG--fDgVEI-~ahGyLl~qFlSp~~N~Rt-s~eN 151 (193)
. . .++|.++|+.+.++| +|+||| .. +|.+|.|. ++.+
T Consensus 100 -------------~-----~------------~~~~~~~a~~~~~~~~~~d~ielN~~---------cP~~~~~g~~l~~ 140 (300)
T TIGR01037 100 -------------S-----S------------VEEFAEVAEKLEKAPPYVDAYELNLS---------CPHVKGGGIAIGQ 140 (300)
T ss_pred -------------C-----C------------HHHHHHHHHHHHhccCccCEEEEECC---------CCCCCCCcccccc
Confidence 0 0 256788899998874 999999 44 57778888 8899
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcEEEEcC
Q 036028 152 RKRLRQDRVERLHQWQEPPPPPFLFSLP 179 (193)
Q Consensus 152 R~Rf~~Eii~aIR~~vg~~~~~~~~ri~ 179 (193)
+.+++.||+++||+++ +++|.+|+.
T Consensus 141 ~~~~~~eiv~~vr~~~---~~pv~vKi~ 165 (300)
T TIGR01037 141 DPELSADVVKAVKDKT---DVPVFAKLS 165 (300)
T ss_pred CHHHHHHHHHHHHHhc---CCCEEEECC
Confidence 9999999999999988 378999993
No 25
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=98.20 E-value=2.9e-05 Score=66.09 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 109 NDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
++|.++|+.+.++|+|+||| .. +|..+...++.++.+++.|++++||+.+ +++|.+|+
T Consensus 111 ~~~~~~a~~~~~~G~d~ielN~~---------cP~~~~~~~~~~~~~~~~eiv~~vr~~~---~~pv~vKl 169 (289)
T cd02810 111 EDYVELARKIERAGAKALELNLS---------CPNVGGGRQLGQDPEAVANLLKAVKAAV---DIPLLVKL 169 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcC---------CCCCCCCcccccCHHHHHHHHHHHHHcc---CCCEEEEe
Confidence 46888999999999999999 64 5666654467889999999999999998 38899998
No 26
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=97.67 E-value=0.0001 Score=64.45 Aligned_cols=57 Identities=12% Similarity=0.055 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 107 IVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 107 ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
..++++++|++++++||++|+| .++++++. ||.++.+|+|++||+++|+ ++.|.+..
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~--------------~~~~~d~~~v~~ir~~~g~-~~~l~vDa 196 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGG--------------EDLREDLARVRAVREAVGP-DVDLMVDA 196 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcch--------------HHHHHHHHHHHHHHHhhCC-CCEEEEEC
Confidence 3456889999999999999999 99987776 8999999999999999998 47776654
No 27
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.63 E-value=0.00011 Score=64.00 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC-----ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 109 NDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR-----SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt-----s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
+.|++||+.+.++|||+|+| +++ |..|.++ ++.++.+++.+|++++|++++ .||.+++
T Consensus 67 ~~~~~aA~~~~~~g~d~IDlN~GC---------P~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~---~PVsvKi 130 (318)
T TIGR00742 67 NDLAKCAKIAEKRGYDEINLNVGC---------PSDRVQNGNFGACLMGNADLVADCVKAMQEAVN---IPVTVKH 130 (318)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCC---------CHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhC---CCeEEEE
Confidence 56899999999999999999 764 6666554 789999999999999999984 5677766
No 28
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=97.53 E-value=0.0006 Score=53.12 Aligned_cols=95 Identities=14% Similarity=0.137 Sum_probs=67.4
Q ss_pred ccEEEeCCceeCCCCCCCCCCccCCCHHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCC
Q 036028 8 GGFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPG 87 (193)
Q Consensus 8 ~GlIi~~~~~V~~~~~~~~~~~~i~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~ 87 (193)
+++|.++....++.+...... +.+.+..+..+.++++|+.+......
T Consensus 26 ~~~v~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 72 (200)
T cd04722 26 ADAIIVGTRSSDPEEAETDDK------------EVLKEVAAETDLPLGVQLAINDAAAA--------------------- 72 (200)
T ss_pred CCEEEEeeEEECcccCCCccc------------cHHHHHHhhcCCcEEEEEccCCchhh---------------------
Confidence 577777776666543321110 55666777788899999875431100
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHh
Q 036028 88 LDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQW 166 (193)
Q Consensus 88 ~~g~~~~~~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~ 166 (193)
. ..+|++++++|+|+||| +.++|+ .+++.++++++|+.
T Consensus 73 --------~---------------~~~a~~~~~~g~d~v~l~~~~~~~------------------~~~~~~~~~~i~~~ 111 (200)
T cd04722 73 --------V---------------DIAAAAARAAGADGVEIHGAVGYL------------------AREDLELIRELREA 111 (200)
T ss_pred --------h---------------hHHHHHHHHcCCCEEEEeccCCcH------------------HHHHHHHHHHHHHh
Confidence 0 01189999999999999 999987 58999999999998
Q ss_pred cCCCCCcEEEEc
Q 036028 167 QEPPPPPFLFSL 178 (193)
Q Consensus 167 vg~~~~~~~~ri 178 (193)
+ + ++++.+++
T Consensus 112 ~-~-~~~v~~~~ 121 (200)
T cd04722 112 V-P-DVKVVVKL 121 (200)
T ss_pred c-C-CceEEEEE
Confidence 8 3 47888888
No 29
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=97.33 E-value=0.0047 Score=53.88 Aligned_cols=56 Identities=16% Similarity=0.099 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCC-CCCCC-ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 109 NDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSD-VEGRR-SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~-~N~Rt-s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
++|.++|+.+.++|+|+||| ..+ + |. .+.+. ++++ .+.|++++||+.+ +.||.+++
T Consensus 112 ~~~~~~a~~~~~~gad~iElN~s~-------~-~~~~~~~g~~~~~---~~~eiv~~v~~~~---~iPv~vKl 170 (325)
T cd04739 112 GGWVDYARQIEEAGADALELNIYA-------L-PTDPDISGAEVEQ---RYLDILRAVKSAV---TIPVAVKL 170 (325)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCC-------C-CCCCCcccchHHH---HHHHHHHHHHhcc---CCCEEEEc
Confidence 46789999999999999999 653 0 11 11122 5554 4889999999987 37899998
No 30
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=96.76 E-value=0.0045 Score=53.93 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCC--CCCCC---ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 109 NDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSD--VEGRR---SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~--~N~Rt---s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
+.|+++|+++++.|||+||| ++ .|. .+++. .+.+.-.++.||+++||+++ +++|.+++
T Consensus 77 ~~~~~aa~~~~~~g~d~IdlN~g---------CP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~---d~pv~vKi 140 (321)
T PRK10415 77 KEMADAARINVESGAQIIDINMG---------CPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV---DVPVTLKI 140 (321)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCC---------CCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc---CCceEEEE
Confidence 56689999999999999999 66 232 23333 57788899999999999998 36777777
No 31
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.37 E-value=0.1 Score=45.93 Aligned_cols=62 Identities=11% Similarity=0.079 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEecchhhHHhhcCCCC-CCCCChhhhhhHHHHHHHHHHHhcCC--CCCcEEEEcC
Q 036028 107 IVNDFRLAARNAIEAGDSNSDFSNLNYMLIFSIKSDV-EGRRSYKQRKRLRQDRVERLHQWQEP--PPPPFLFSLP 179 (193)
Q Consensus 107 ii~~f~~AA~~a~~AGfDgVEI~ahGyLl~qFlSp~~-N~Rts~eNR~Rf~~Eii~aIR~~vg~--~~~~~~~ri~ 179 (193)
..++|++.++.+.+ ++|++|| +|.+|.+ |.|. .++. ..+.||+++||+++++ .++||.++++
T Consensus 155 ~~~d~~~~~~~~~~-~ad~lel--------N~scP~~~g~~~-~~~~-~~~~eiv~aVr~~~~~~~~~~PV~vKls 219 (344)
T PRK05286 155 AVDDYLICLEKLYP-YADYFTV--------NISSPNTPGLRD-LQYG-EALDELLAALKEAQAELHGYVPLLVKIA 219 (344)
T ss_pred CHHHHHHHHHHHHh-hCCEEEE--------EccCCCCCCccc-ccCH-HHHHHHHHHHHHHHhccccCCceEEEeC
Confidence 35677777777754 6999999 3334544 6665 2222 3456999999999872 1289999993
No 32
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.77 E-value=0.27 Score=42.26 Aligned_cols=56 Identities=5% Similarity=-0.136 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHh---CCCeEEE--ec-chhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 109 NDFRLAARNAIEA---GDSNSDF--SN-LNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 109 ~~f~~AA~~a~~A---GfDgVEI--~a-hGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
++|.++|++..+. |+|+||| +| |. + ..+. +..--..+.+|+++||+.+ +.||.++|
T Consensus 103 ~~~~~~~~~~~~~~~~~ad~ielN~sCPn~--------~--~~~~-~~~~~~~~~~i~~~v~~~~---~iPv~vKl 164 (294)
T cd04741 103 EDIAAMYKKIAAHQKQFPLAMELNLSCPNV--------P--GKPP-PAYDFDATLEYLTAVKAAY---SIPVGVKT 164 (294)
T ss_pred HHHHHHHHHHHhhccccccEEEEECCCCCC--------C--Cccc-ccCCHHHHHHHHHHHHHhc---CCCEEEEe
Confidence 4667778888775 7999999 43 31 0 1122 1111248999999999987 37899999
No 33
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=95.35 E-value=0.066 Score=46.03 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCC-CCCCC---ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 109 NDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSD-VEGRR---SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~-~N~Rt---s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
++|.++|+.+.++|+|+||| ... |. .++|. .+..--..+.+|+++||+.+. .||.+++
T Consensus 113 ~~~~~~a~~~~~~gad~ielN~sC---------P~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~---~Pv~vKl 175 (299)
T cd02940 113 EDWTELAKLVEEAGADALELNFSC---------PHGMPERGMGAAVGQDPELVEEICRWVREAVK---IPVIAKL 175 (299)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCC---------CCCCCCCCCchhhccCHHHHHHHHHHHHHhcC---CCeEEEC
Confidence 68899999999999999999 441 22 14444 455556788999999999873 7899999
No 34
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=95.09 E-value=0.28 Score=42.71 Aligned_cols=63 Identities=11% Similarity=0.137 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCC-CCCCChhhhhhHHHHHHHHHHHhcCC--CCCcEEEEcC
Q 036028 105 PQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDV-EGRRSYKQRKRLRQDRVERLHQWQEP--PPPPFLFSLP 179 (193)
Q Consensus 105 ~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~-N~Rts~eNR~Rf~~Eii~aIR~~vg~--~~~~~~~ri~ 179 (193)
++..++|++.++.+.. ++|++|| .. +|.+ |.|. .+ .-..+.||+++||+.+.+ .++||.+|++
T Consensus 144 ~~~~~d~~~~~~~~~~-~ad~ielN~s---------cP~~~g~~~-~~-~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~ 210 (327)
T cd04738 144 EDAVEDYVIGVRKLGP-YADYLVVNVS---------SPNTPGLRD-LQ-GKEALRELLTAVKEERNKLGKKVPLLVKIA 210 (327)
T ss_pred cccHHHHHHHHHHHHh-hCCEEEEECC---------CCCCCcccc-cc-CHHHHHHHHHHHHHHHhhcccCCCeEEEeC
Confidence 3456788888888765 4999999 32 1222 4444 11 223566999999998841 1389999993
No 35
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=94.66 E-value=0.079 Score=46.29 Aligned_cols=61 Identities=16% Similarity=0.100 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC---ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 109 NDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR---SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt---s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
+..++||+.+.+.|+|+|+| ++.= +|..++-. .|-.--.++.+||++++++++ +.||.+++
T Consensus 79 ~~l~eaA~~~~~~g~~~IdlN~GCP-------~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~--~iPVTVKi 143 (323)
T COG0042 79 ELLAEAAKIAEELGADIIDLNCGCP-------SPKVVKGGAGAALLKNPELLAEIVKAMVEAVG--DIPVTVKI 143 (323)
T ss_pred HHHHHHHHHHHhcCCCEEeeeCCCC-------hHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC--CCCeEEEE
Confidence 56799999999999999999 5531 33343333 454555789999999999998 36777776
No 36
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=94.59 E-value=0.12 Score=46.23 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhCCCeEEE--ec-chhhHHhhcCCCCCCCC---ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 108 VNDFRLAARNAIEAGDSNSDF--SN-LNYMLIFSIKSDVEGRR---SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 108 i~~f~~AA~~a~~AGfDgVEI--~a-hGyLl~qFlSp~~N~Rt---s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
.++|.+-|+++.++|.|++|| +| |+ .+.|+ .++....++.+|+++||+.+ +.||.++|
T Consensus 126 ~~~~~~~a~~~e~~GaD~iELNiSCPn~----------~~~r~~g~~~gq~~e~~~~i~~~Vk~~~---~iPv~vKL 189 (385)
T PLN02495 126 KDAWEEIIERVEETGVDALEINFSCPHG----------MPERKMGAAVGQDCDLLEEVCGWINAKA---TVPVWAKM 189 (385)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCC----------CCcCccchhhccCHHHHHHHHHHHHHhh---cCceEEEe
Confidence 477888899999999999999 33 43 24455 56677889999999999986 37899999
No 37
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=94.05 E-value=0.22 Score=43.47 Aligned_cols=56 Identities=14% Similarity=0.068 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCC-CCCCC-ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 109 NDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSD-VEGRR-SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~-~N~Rt-s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
++|.+.|+.+.++|+|+||| ..+ .|. .+.+. ..++ ...|++++||+.+ +.||.+++
T Consensus 114 ~e~~~~a~~~~~agad~ielN~sc--------pp~~~~~~g~~~~~---~~~eil~~v~~~~---~iPV~vKl 172 (334)
T PRK07565 114 GGWVDYARQIEQAGADALELNIYY--------LPTDPDISGAEVEQ---RYLDILRAVKSAV---SIPVAVKL 172 (334)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCC--------CCCCCCCccccHHH---HHHHHHHHHHhcc---CCcEEEEe
Confidence 36789999999999999999 632 111 00111 3333 3689999999987 37899998
No 38
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=93.97 E-value=0.2 Score=45.06 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCC-CCCCC---ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 109 NDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSD-VEGRR---SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~-~N~Rt---s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
++|++.|+.+.++|+|+||| .. +|. .+.|. .+..--..+.+|+++||+.+ +.||.++|
T Consensus 113 ~~~~~~a~~~~~~g~d~ielN~s---------cP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~---~~Pv~vKl 175 (420)
T PRK08318 113 EEWKEIAPLVEETGADGIELNFG---------CPHGMSERGMGSAVGQVPELVEMYTRWVKRGS---RLPVIVKL 175 (420)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCC---------CCCCccccCCcccccCCHHHHHHHHHHHHhcc---CCcEEEEc
Confidence 66889999999999999999 43 132 23444 34444578999999999987 37899999
No 39
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=92.85 E-value=0.97 Score=37.60 Aligned_cols=116 Identities=7% Similarity=0.033 Sum_probs=70.1
Q ss_pred CccEEEeCCceeCCCCCC------CCCCccCCCHHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccC
Q 036028 7 NGGFLIAEATGVFDTVQG------YPNTPGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISST 80 (193)
Q Consensus 7 G~GlIi~~~~~V~~~~~~------~~~~~~i~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS 80 (193)
.+|+.+.|+...+..... ..+-..+..+...+.+++....+++.+.++++||.-.
T Consensus 22 ~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~p~~vqi~g~------------------- 82 (233)
T cd02911 22 HAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNVLVGVNVRSS------------------- 82 (233)
T ss_pred cCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhccCCeEEEEecCC-------------------
Confidence 368888888776532110 0001111223366777777778888899999998410
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC---ChhhhhhHH
Q 036028 81 NKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR---SYKQRKRLR 156 (193)
Q Consensus 81 ~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt---s~eNR~Rf~ 156 (193)
. .+.++++|+.+.+ ++|+||| ++.= +..+ .++. .+-..-..+
T Consensus 83 --------------~------------~~~~~~aa~~~~~-~~~~ielN~gCP---~~~v----~~~g~G~~Ll~~p~~l 128 (233)
T cd02911 83 --------------S------------LEPLLNAAALVAK-NAAILEINAHCR---QPEM----VEAGAGEALLKDPERL 128 (233)
T ss_pred --------------C------------HHHHHHHHHHHhh-cCCEEEEECCCC---cHHH----hcCCcchHHcCCHHHH
Confidence 0 1456788988877 4699999 5420 0000 0111 222233588
Q ss_pred HHHHHHHHHhcCCCCCcEEEEcC
Q 036028 157 QDRVERLHQWQEPPPPPFLFSLP 179 (193)
Q Consensus 157 ~Eii~aIR~~vg~~~~~~~~ri~ 179 (193)
.|++++||+ + +++|.+|+.
T Consensus 129 ~eiv~avr~-~---~~pVsvKir 147 (233)
T cd02911 129 SEFIKALKE-T---GVPVSVKIR 147 (233)
T ss_pred HHHHHHHHh-c---CCCEEEEEc
Confidence 999999998 4 378999883
No 40
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=91.93 E-value=0.62 Score=36.42 Aligned_cols=56 Identities=13% Similarity=0.051 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 108 VNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 108 i~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
.+...+.|+.|+++|+|+|.+ .-.+|..++ +.+.+.+.+++|+++++. ++++.+..
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~--------------~~~~~~~~~~~i~~~~~~-~~pv~iy~ 120 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEG--------------DWEEVLEEIAAVVEAADG-GLPLKVIL 120 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCC--------------CHHHHHHHHHHHHHHhcC-CceEEEEE
Confidence 466678889999999999999 776655532 346788888888887722 46777665
No 41
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=90.89 E-value=0.79 Score=40.44 Aligned_cols=51 Identities=8% Similarity=-0.074 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 109 NDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
+++.+.|+++++.||+.+.| ...+. . .+-.+|.+++||+++|+ ++.+.+-.
T Consensus 145 ~~~~~~a~~~~~~Gf~~~Kik~~~~~--------------~----~~~di~~i~~vR~~~G~-~~~l~vDa 196 (368)
T cd03329 145 EAYADFAEECKALGYRAIKLHPWGPG--------------V----VRRDLKACLAVREAVGP-DMRLMHDG 196 (368)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCch--------------h----HHHHHHHHHHHHHHhCC-CCeEEEEC
Confidence 45778888999999999999 53211 0 13478999999999998 46665543
No 42
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=89.30 E-value=0.31 Score=42.24 Aligned_cols=60 Identities=17% Similarity=0.130 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC---ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 109 NDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR---SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt---s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
+.+++||+.+.+.|+|+|.| ++.- +|...++. .+-.--..+.+||+++|++++ .+|.+++
T Consensus 66 ~~~~~aa~~~~~~~~~~IDlN~GCP-------~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~---~pvsvKi 129 (309)
T PF01207_consen 66 EDLAEAAEIVAELGFDGIDLNMGCP-------APKVTKGGAGAALLKDPDLLAEIVKAVRKAVP---IPVSVKI 129 (309)
T ss_dssp HHHHHHHHHHCCTT-SEEEEEE----------SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S---SEEEEEE
T ss_pred HHHHHHHHhhhccCCcEEeccCCCC-------HHHHhcCCcChhhhcChHHhhHHHHhhhcccc---cceEEec
Confidence 67899999999999999999 6532 11112222 232334699999999999986 4555555
No 43
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=89.28 E-value=3.3 Score=36.66 Aligned_cols=105 Identities=15% Similarity=0.098 Sum_probs=64.0
Q ss_pred hHHhHHHHHHHHHhcCCeEEEcccCCccc-cCCCCCCCCCCcccc--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 036028 36 QVEAWKPIVDAVHQKGGTFFCQLWHVGRV-STFGLQPNGKAPISS--TNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFR 112 (193)
Q Consensus 36 ~i~~~~~l~~~vh~~G~~i~~QL~h~G~~-~~~~~~~~~~~~~~p--S~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~ 112 (193)
..+.++-+.+++.+.++.+++|+...-.. ........-....+- +.+|.. . ..-|.-+.+
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPVa-----l--HLDHg~~~e---------- 89 (347)
T PRK09196 27 NLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVV-----M--HQDHGNSPA---------- 89 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEE-----E--ECCCCCCHH----------
Confidence 45678889999999999999999654211 000000000000000 001110 0 001122222
Q ss_pred HHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHh
Q 036028 113 LAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQW 166 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~ 166 (193)
.+++|.++||+-|.| +.| |. -+|.+.++|.=.+..+|+++..+..
T Consensus 90 -~i~~ai~~GftSVMiDgS~--l~------~~~~~~p~eENI~~Tkevve~Ah~~ 135 (347)
T PRK09196 90 -TCQRAIQLGFTSVMMDGSL--KA------DGKTPASYEYNVDVTRKVVEMAHAC 135 (347)
T ss_pred -HHHHHHHcCCCEEEecCCC--Cc------ccCCCCCHHHHHHHHHHHHHHHHHc
Confidence 277799999999999 887 22 2788889999999999999988663
No 44
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=88.93 E-value=1.5 Score=37.42 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCC-CCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEcC
Q 036028 105 PQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVE-GRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSLP 179 (193)
Q Consensus 105 ~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N-~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri~ 179 (193)
++..++|++.|+++. +|+|++|| -. +|.+. .+ .+.+--....++++.+|+.+ +.|+.++++
T Consensus 108 ~~~~~d~~~~a~~~~-~~ad~lElN~S---------cPn~~~~~-~~~~~~~~~~~i~~~v~~~~---~~Pv~vKL~ 170 (295)
T PF01180_consen 108 EEEIEDWAELAKRLE-AGADALELNLS---------CPNVPGGR-PFGQDPELVAEIVRAVREAV---DIPVFVKLS 170 (295)
T ss_dssp SGHHHHHHHHHHHHH-HHCSEEEEEST---------STTSTTSG-GGGGHHHHHHHHHHHHHHHH---SSEEEEEE-
T ss_pred chhHHHHHHHHHHhc-CcCCceEEEee---------ccCCCCcc-ccccCHHHHHHHHHHHHhcc---CCCEEEEec
Confidence 457888999999888 99999999 32 23222 12 34444557778888888876 489999993
No 45
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=88.23 E-value=14 Score=32.36 Aligned_cols=60 Identities=18% Similarity=0.083 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhCCCeEEE--ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcC----CCCCcEEEEc
Q 036028 107 IVNDFRLAARNAIEAGDSNSDF--SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQE----PPPPPFLFSL 178 (193)
Q Consensus 107 ii~~f~~AA~~a~~AGfDgVEI--~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg----~~~~~~~~ri 178 (193)
..++|++.++++.+ ..|++|| .|-.. + +.|. ..+ ...+.|++++||+.+. ....||.+++
T Consensus 152 ~~~dy~~~~~~~~~-~ad~iElNlScPn~-------~--~~~~-~~~-~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKL 217 (335)
T TIGR01036 152 AKEDYAACLRKLGP-LADYLVVNVSSPNT-------P--GLRD-LQY-KAELRDLLTAVKQEQDGLRRVHRVPVLVKI 217 (335)
T ss_pred CHHHHHHHHHHHhh-hCCEEEEEccCCCC-------C--Cccc-ccC-HHHHHHHHHHHHHHHHhhhhccCCceEEEe
Confidence 35677777777765 5999999 44210 0 1222 222 3678889999998774 1127899999
No 46
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=87.56 E-value=2.1 Score=37.08 Aligned_cols=57 Identities=9% Similarity=0.089 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhC-CCeEEE--ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 109 NDFRLAARNAIEAG-DSNSDF--SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 109 ~~f~~AA~~a~~AG-fDgVEI--~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
++|.+.|+.+.++| .|++|| .|-. . .+.|. +..=...+.|++++||+.+. .||.+++
T Consensus 105 ~~~~~~a~~~~~~g~ad~iElN~ScPn-~--------~~~~~-~g~d~~~~~~i~~~v~~~~~---~Pv~vKl 164 (310)
T PRK02506 105 EETHTILKKIQASDFNGLVELNLSCPN-V--------PGKPQ-IAYDFETTEQILEEVFTYFT---KPLGVKL 164 (310)
T ss_pred HHHHHHHHHHhhcCCCCEEEEECCCCC-C--------CCccc-cccCHHHHHHHHHHHHHhcC---CccEEec
Confidence 56677788888899 899999 4421 1 01222 11111236999999999873 6899999
No 47
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=85.40 E-value=3.1 Score=37.13 Aligned_cols=66 Identities=18% Similarity=0.141 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHH-----------HHHHHHHHHhCCCeEEEecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHH
Q 036028 97 RPLRTEEIPQIVNDF-----------RLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQ 165 (193)
Q Consensus 97 ~~mt~~eI~~ii~~f-----------~~AA~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~ 165 (193)
..+|-++|+++.+.. .+-|++|.++|+|+|.|+.||- -|+-+. .=..++|.+|++
T Consensus 213 ~~~~w~~i~~l~~~~~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGG--rq~~~~------------~a~~~~L~ei~~ 278 (367)
T TIGR02708 213 QKLSPRDIEEIAGYSGLPVYVKGPQCPEDADRALKAGASGIWVTNHGG--RQLDGG------------PAAFDSLQEVAE 278 (367)
T ss_pred CCCCHHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHcCcCEEEECCcCc--cCCCCC------------CcHHHHHHHHHH
Confidence 357778999988765 4899999999999999966662 222111 112456677777
Q ss_pred hcCCCCCcEEEE
Q 036028 166 WQEPPPPPFLFS 177 (193)
Q Consensus 166 ~vg~~~~~~~~r 177 (193)
++++ .++|.+-
T Consensus 279 av~~-~i~vi~d 289 (367)
T TIGR02708 279 AVDK-RVPIVFD 289 (367)
T ss_pred HhCC-CCcEEee
Confidence 7765 3666553
No 48
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=84.19 E-value=7.5 Score=32.59 Aligned_cols=84 Identities=14% Similarity=0.097 Sum_probs=52.9
Q ss_pred HHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 036028 34 KEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRL 113 (193)
Q Consensus 34 ~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~ 113 (193)
..+...++++++..|+.|..+.+=+-.-=.+-. ...-++.-.+-.. .| +....++.++.++-++.+..
T Consensus 106 ~~~~~~l~~~i~~l~~~gI~VSLFiDPd~~qi~------~A~~~GAd~VELh---TG---~Ya~a~~~~~~~~el~~i~~ 173 (234)
T cd00003 106 AGQAEKLKPIIERLKDAGIRVSLFIDPDPEQIE------AAKEVGADRVELH---TG---PYANAYDKAEREAELERIAK 173 (234)
T ss_pred hcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH------HHHHhCcCEEEEe---ch---hhhcCCCchhHHHHHHHHHH
Confidence 467789999999999999988775532100000 0000001001000 11 23455566677777999999
Q ss_pred HHHHHHHhCCCeEEE-ecch
Q 036028 114 AARNAIEAGDSNSDF-SNLN 132 (193)
Q Consensus 114 AA~~a~~AGfDgVEI-~ahG 132 (193)
||+.|.+. |+++ ++||
T Consensus 174 aa~~a~~~---GL~VnAGHg 190 (234)
T cd00003 174 AAKLAREL---GLGVNAGHG 190 (234)
T ss_pred HHHHHHHc---CCEEecCCC
Confidence 99999999 5899 9998
No 49
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=84.11 E-value=2 Score=36.44 Aligned_cols=64 Identities=9% Similarity=-0.025 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 103 EIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 103 eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
.+++|++.-.+-|+..+++|+|||-| --|.+ |+ .++..+| .....--|+.+||+.++ +|+++-+
T Consensus 23 ~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~-------Py-~~~~~~e-tvaaM~~i~~~v~~~~~---~p~GVnv 87 (254)
T PF03437_consen 23 SMEEIIERAVREAEALEEGGVDGIIVENMGDV-------PY-PKRVGPE-TVAAMARIAREVRREVS---VPVGVNV 87 (254)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEecCCCC-------Cc-cCCCCHH-HHHHHHHHHHHHHHhCC---CCEEeee
Confidence 88999999999999999999999988 43332 22 1222222 55667778888898883 6777776
No 50
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=82.77 E-value=33 Score=30.22 Aligned_cols=117 Identities=12% Similarity=0.111 Sum_probs=80.6
Q ss_pred HHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAAR 116 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA~ 116 (193)
++...++++++|++|-++.+-++.+-.++.|.- ..-|.+ =..++.+++.+-|.+|.....
T Consensus 57 ~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~------Q~~P~a--------------W~~~~~~~l~~~v~~yT~~vl 116 (332)
T PF07745_consen 57 LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGK------QNKPAA--------------WANLSFDQLAKAVYDYTKDVL 116 (332)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-------B--TT--------------CTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCC------CCCCcc--------------CCCCCHHHHHHHHHHHHHHHH
Confidence 567888999999999999999987766665542 111211 135689999999999999887
Q ss_pred HH-HHhCC--CeEEEecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 117 NA-IEAGD--SNSDFSNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 117 ~a-~~AGf--DgVEI~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
.+ +++|. |.|+||- - +=+-||.|.-+ ...++|=++|+..-++|||+.. + +..|.+-+
T Consensus 117 ~~l~~~G~~pd~VQVGN-E-in~Gmlwp~g~-~~~~~~~a~ll~ag~~AVr~~~-p-~~kV~lH~ 176 (332)
T PF07745_consen 117 QALKAAGVTPDMVQVGN-E-INNGMLWPDGK-PSNWDNLAKLLNAGIKAVREVD-P-NIKVMLHL 176 (332)
T ss_dssp HHHHHTT--ESEEEESS-S-GGGESTBTTTC-TT-HHHHHHHHHHHHHHHHTHS-S-TSEEEEEE
T ss_pred HHHHHCCCCccEEEeCc-c-ccccccCcCCC-ccCHHHHHHHHHHHHHHHHhcC-C-CCcEEEEE
Confidence 77 55775 6777722 1 33446677543 3388888999999999999954 4 47888887
No 51
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=82.75 E-value=13 Score=32.54 Aligned_cols=65 Identities=8% Similarity=-0.042 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC-ChhhhhhHHHHHHHHHHHhcC
Q 036028 98 PLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR-SYKQRKRLRQDRVERLHQWQE 168 (193)
Q Consensus 98 ~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt-s~eNR~Rf~~Eii~aIR~~vg 168 (193)
.++..+.+.++.++ ..++.+.|||||++ --.+|.... .+..+ |. .-+.=.+|+++|.+.+|+.-+
T Consensus 139 d~~~~~W~~il~~r---l~~l~~kGfDGvfLD~lDsy~~~~--~~~~~-~~~~~~~m~~~i~~Ia~~ar~~~P 205 (315)
T TIGR01370 139 KYWDPEWKAIAFSY---LDRVIAQGFDGVYLDLIDAFEYWA--ENGDN-RPGAAAEMIAFVCEIAAYARAQNP 205 (315)
T ss_pred ecccHHHHHHHHHH---HHHHHHcCCCeEeeccchhhhhhc--ccCCc-chhhHHHHHHHHHHHHHHHHHHCC
Confidence 44566778877765 56888999999999 999985421 10011 11 112336899999999999854
No 52
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=82.68 E-value=21 Score=31.20 Aligned_cols=126 Identities=13% Similarity=0.079 Sum_probs=69.4
Q ss_pred HHhHHHHHHHHHhcCCeEEEcccCCc-c---ccCCCCCCCCCCcc-ccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQLWHVG-R---VSTFGLQPNGKAPI-SSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDF 111 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL~h~G-~---~~~~~~~~~~~~~~-~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f 111 (193)
+..++++++.+|++|..+++.+.-.- . ..+|++ .+ ....-.+.. ..+..+.. +-+. ++.+--
T Consensus 60 i~D~~~l~~~l~e~gIY~IARIv~FkD~~la~~~pe~------av~~~~G~~w~d-~~~~~Wvn--P~~~----evw~Y~ 126 (316)
T PF13200_consen 60 IKDLKALVKKLKEHGIYPIARIVVFKDPVLAEAHPEW------AVKTKDGSVWRD-NEGEAWVN--PYSK----EVWDYN 126 (316)
T ss_pred ccCHHHHHHHHHHCCCEEEEEEEEecChHHhhhChhh------EEECCCCCcccC-CCCCccCC--CCCH----HHHHHH
Confidence 57899999999999999998885431 0 011111 00 011111110 01111222 2233 333444
Q ss_pred HHHHHHHHHhCCCeEEE-e---cchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 112 RLAARNAIEAGDSNSDF-S---NLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI-~---ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
.+-|+.|.++|||.|++ - ..+-..++...+. ...-++|..-+.+.|+.+|+++.+....|.+-+
T Consensus 127 i~IA~Eaa~~GFdEIqfDYIRFP~~~~~~~l~y~~---~~~~~~r~~aI~~Fl~~a~~~l~~~~v~vSaDV 194 (316)
T PF13200_consen 127 IDIAKEAAKLGFDEIQFDYIRFPDEGRLSGLDYSE---NDTEESRVDAITDFLAYAREELHPYGVPVSADV 194 (316)
T ss_pred HHHHHHHHHcCCCEEEeeeeecCCCCcccccccCC---CCCcchHHHHHHHHHHHHHHHHhHcCCCEEEEe
Confidence 45677777899999998 3 3322333332221 112345999999999999998854334555555
No 53
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=82.07 E-value=17 Score=32.32 Aligned_cols=105 Identities=13% Similarity=0.096 Sum_probs=61.7
Q ss_pred hHHhHHHHHHHHHhcCCeEEEcccCCccccCC-CCCCCCCCccc--cCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 036028 36 QVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTF-GLQPNGKAPIS--STNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFR 112 (193)
Q Consensus 36 ~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~-~~~~~~~~~~~--pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~ 112 (193)
..+..+-+.+++.+.++.+++|+...-..-.+ .....-....+ .+.+|.- . ..-|..+.+
T Consensus 27 n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVa-----L--HLDHg~~~e---------- 89 (347)
T PRK13399 27 NMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPIC-----L--HQDHGNSPA---------- 89 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEE-----E--ECCCCCCHH----------
Confidence 45678889999999999999999653211000 00000000010 0001110 0 001222322
Q ss_pred HHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHh
Q 036028 113 LAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQW 166 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~ 166 (193)
.+++|.++||+-|.| +.| | |-++++.++|.-.+..+||++..+..
T Consensus 90 -~i~~Ai~~GFtSVMiDgS~--l------~~~~~~~~~eeNI~~Trevve~Ah~~ 135 (347)
T PRK13399 90 -TCQSAIRSGFTSVMMDGSL--L------ADGKTPASYDYNVDVTRRVTEMAHAV 135 (347)
T ss_pred -HHHHHHhcCCCEEEEeCCC--C------CCCCCccCHHHHHHHHHHHHHHHHHc
Confidence 358899999999999 887 2 22454449999999999999987663
No 54
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=80.57 E-value=13 Score=31.25 Aligned_cols=83 Identities=10% Similarity=0.030 Sum_probs=52.1
Q ss_pred HHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCC--CCCCCCCCCCCCCCHHHHHHHHHHH
Q 036028 34 KEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTP--GLDGQDWSSPRPLRTEEIPQIVNDF 111 (193)
Q Consensus 34 ~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~--~~~g~~~~~~~~mt~~eI~~ii~~f 111 (193)
..+...++++++..|+.|..+.+-+-. +. .+.-......... ...| +....++.++.++-++.+
T Consensus 106 ~~~~~~l~~~i~~l~~~gI~VSLFiDP-------~~----~qi~~A~~~GAd~VELhTG---~YA~a~~~~~~~~el~~i 171 (237)
T TIGR00559 106 ARLKDKLCELVKRFHAAGIEVSLFIDA-------DK----DQISAAAEVGADRIEIHTG---PYANAYNKKEMAEELQRI 171 (237)
T ss_pred hhCHHHHHHHHHHHHHCCCEEEEEeCC-------CH----HHHHHHHHhCcCEEEEech---hhhcCCCchhHHHHHHHH
Confidence 467789999999999999987775421 10 0000111111000 0011 234455666666568999
Q ss_pred HHHHHHHHHhCCCeEEE-ecchh
Q 036028 112 RLAARNAIEAGDSNSDF-SNLNY 133 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI-~ahGy 133 (193)
..+|+.|.+. |+++ ++||-
T Consensus 172 ~~aa~~A~~l---GL~VnAGHgL 191 (237)
T TIGR00559 172 VKASVHAHSL---GLKVNAGHGL 191 (237)
T ss_pred HHHHHHHHHc---CCEEecCCCC
Confidence 9999999999 5899 99983
No 55
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=80.49 E-value=2.5 Score=31.96 Aligned_cols=44 Identities=16% Similarity=0.146 Sum_probs=30.8
Q ss_pred HHHHHHhCCCeEEE-ecc-hhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHH
Q 036028 115 ARNAIEAGDSNSDF-SNL-NYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLH 164 (193)
Q Consensus 115 A~~a~~AGfDgVEI-~ah-GyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR 164 (193)
..+|.+-|.|||-+ ++| |- +.|.|..+ ....|++|+.|+++++=
T Consensus 46 vl~Al~~GaDGV~v~GC~~ge--CHy~~GN~----ka~rR~~~lke~l~elg 91 (132)
T COG1908 46 VLKALRKGADGVLVAGCKIGE--CHYISGNY----KAKRRMELLKELLKELG 91 (132)
T ss_pred HHHHHHcCCCeEEEecccccc--eeeeccch----HHHHHHHHHHHHHHHhC
Confidence 45677889999999 876 32 34443321 45679999999998653
No 56
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=79.80 E-value=4.7 Score=36.16 Aligned_cols=63 Identities=11% Similarity=-0.002 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHH-----------HHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHH
Q 036028 98 PLRTEEIPQIVNDF-----------RLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQ 165 (193)
Q Consensus 98 ~mt~~eI~~ii~~f-----------~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~ 165 (193)
.+|=++|+.|.+.+ .+.|++|.++|.|+|-+ ++.|--+.. . .=..+++.+|++
T Consensus 231 ~ltW~di~~lr~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~----------~-----~~t~~~L~~i~~ 295 (381)
T PRK11197 231 SISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDG----------V-----LSSARALPAIAD 295 (381)
T ss_pred CCCHHHHHHHHHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCCC----------c-----ccHHHHHHHHHH
Confidence 46778899999877 58999999999999999 544421111 1 124567777777
Q ss_pred hcCCCCCcEEE
Q 036028 166 WQEPPPPPFLF 176 (193)
Q Consensus 166 ~vg~~~~~~~~ 176 (193)
++++ +++|.+
T Consensus 296 a~~~-~~~vi~ 305 (381)
T PRK11197 296 AVKG-DITILA 305 (381)
T ss_pred HhcC-CCeEEe
Confidence 7765 366654
No 57
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=77.94 E-value=19 Score=32.02 Aligned_cols=104 Identities=14% Similarity=0.096 Sum_probs=62.2
Q ss_pred hHHhHHHHHHHHHhcCCeEEEcccCCccccCC-CCCCCCCCcccc--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 036028 36 QVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTF-GLQPNGKAPISS--TNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFR 112 (193)
Q Consensus 36 ~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~-~~~~~~~~~~~p--S~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~ 112 (193)
..+.++-+.++..+.++.+++|+...-..-.+ .....-....+- +.+|.-. ..-|..+.
T Consensus 25 n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPVal-------HLDHg~~~----------- 86 (347)
T TIGR01521 25 NMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVM-------HQDHGNSP----------- 86 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEE-------ECCCCCCH-----------
Confidence 46688889999999999999999654211000 000000000110 0011100 00122222
Q ss_pred HHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHH
Q 036028 113 LAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQ 165 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~ 165 (193)
+.+++|.++||+.|.| +.| |. -+|+.-++|.=.+..+||++-.+.
T Consensus 87 e~i~~Ai~~GFtSVMiDgS~--l~------~~~~~~p~eENI~~Tkevve~Ah~ 132 (347)
T TIGR01521 87 ATCQRAIQLGFTSVMMDGSL--RE------DAKTPADYDYNVRVTAEVVAFAHA 132 (347)
T ss_pred HHHHHHHHcCCCEEeecCcC--Cc------ccCCCCCHHHHHHHHHHHHHHHHH
Confidence 2478889999999999 876 21 245555999999999999998886
No 58
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=77.53 E-value=5.8 Score=35.60 Aligned_cols=63 Identities=17% Similarity=0.069 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHH-----------HHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHH
Q 036028 98 PLRTEEIPQIVNDF-----------RLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQ 165 (193)
Q Consensus 98 ~mt~~eI~~ii~~f-----------~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~ 165 (193)
.+|=++|+++.+.+ .+.|++|.++|+|+|-| .+.|--++ ...-..++|.+|++
T Consensus 239 ~~tW~~i~~lr~~~~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d---------------~~~~t~~~L~ei~~ 303 (383)
T cd03332 239 SLTWEDLAFLREWTDLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQVD---------------GSIAALDALPEIVE 303 (383)
T ss_pred CCCHHHHHHHHHhcCCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCC---------------CCcCHHHHHHHHHH
Confidence 47789999999874 56899999999999999 55552110 12235667778888
Q ss_pred hcCCCCCcEEE
Q 036028 166 WQEPPPPPFLF 176 (193)
Q Consensus 166 ~vg~~~~~~~~ 176 (193)
++++ ..+|.+
T Consensus 304 ~~~~-~~~vi~ 313 (383)
T cd03332 304 AVGD-RLTVLF 313 (383)
T ss_pred HhcC-CCeEEE
Confidence 8875 366654
No 59
>PRK09989 hypothetical protein; Provisional
Probab=77.18 E-value=2.5 Score=35.04 Aligned_cols=23 Identities=26% Similarity=0.275 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhCCCeEEE-ecchh
Q 036028 111 FRLAARNAIEAGDSNSDF-SNLNY 133 (193)
Q Consensus 111 f~~AA~~a~~AGfDgVEI-~ahGy 133 (193)
+.++.+.++++|||+||| +..++
T Consensus 17 l~~~l~~~~~~Gfd~VEl~~~~~~ 40 (258)
T PRK09989 17 FIERFAAARKAGFDAVEFLFPYDY 40 (258)
T ss_pred HHHHHHHHHHcCCCEEEECCcccC
Confidence 567888999999999999 75554
No 60
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=76.75 E-value=5.5 Score=33.16 Aligned_cols=53 Identities=9% Similarity=0.030 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEecchhhHHhhcCCCCCCCC-------Chhh--hhhHHHHHHHHHHHhc
Q 036028 109 NDFRLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRR-------SYKQ--RKRLRQDRVERLHQWQ 167 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rt-------s~eN--R~Rf~~Eii~aIR~~v 167 (193)
+.+.+.++...++|.|.+||+- -|-.|...-.. +++| ...+..++++.||+.+
T Consensus 14 ~~~~~~~~~l~~~Gad~iel~i------PfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~ 75 (242)
T cd04724 14 ETTLEILKALVEAGADIIELGI------PFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN 75 (242)
T ss_pred HHHHHHHHHHHHCCCCEEEECC------CCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC
Confidence 5678889999999999999941 23333322111 2222 2369999999999986
No 61
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=76.74 E-value=27 Score=29.73 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=21.2
Q ss_pred HHhHHHHHHHHHhcCCeEEEcccCCccc
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQLWHVGRV 64 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL~h~G~~ 64 (193)
.++++++++..-++|+.-++=+.+.|-.
T Consensus 20 ~~~l~~l~~~l~~~Gv~gi~v~GstGE~ 47 (289)
T cd00951 20 EDAYRAHVEWLLSYGAAALFAAGGTGEF 47 (289)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCCcCc
Confidence 5689999999999998777655555543
No 62
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=76.31 E-value=13 Score=31.17 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHhCCCeEEE-ec
Q 036028 107 IVNDFRLAARNAIEAGDSNSDF-SN 130 (193)
Q Consensus 107 ii~~f~~AA~~a~~AGfDgVEI-~a 130 (193)
....|-+--+.|++-|||.||| .+
T Consensus 69 ~q~~~~~Yl~~~k~lGf~~IEiS~G 93 (237)
T TIGR03849 69 SKGKFDEYLNECDELGFEAVEISDG 93 (237)
T ss_pred HhhhHHHHHHHHHHcCCCEEEEcCC
Confidence 3355555666789999999999 55
No 63
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=75.21 E-value=20 Score=30.35 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=20.9
Q ss_pred HHhHHHHHHHHHhcCCeEEEcccCCcc
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQLWHVGR 63 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL~h~G~ 63 (193)
.+.++++++..-+.|+.-++=+...|.
T Consensus 19 ~~~~~~li~~l~~~Gv~Gl~~~GstGE 45 (279)
T cd00953 19 KEKFKKHCENLISKGIDYVFVAGTTGL 45 (279)
T ss_pred HHHHHHHHHHHHHcCCcEEEEcccCCC
Confidence 578999999999999877665555543
No 64
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=74.87 E-value=11 Score=31.38 Aligned_cols=112 Identities=7% Similarity=-0.009 Sum_probs=66.0
Q ss_pred CccEEEeCCceeCCCC---------CCCCCCccCCCH-HhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCc
Q 036028 7 NGGFLIAEATGVFDTV---------QGYPNTPGIWTK-EQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAP 76 (193)
Q Consensus 7 G~GlIi~~~~~V~~~~---------~~~~~~~~i~~~-~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~ 76 (193)
.+|+++.|+..++... ++... -+++. .....+.+-.+.++ .+.++++|+.+.
T Consensus 16 ~~~~~~lgg~~~d~~t~~a~~~~~~rgr~e--f~~~~e~~~~~i~~e~~~~~-~~~~vivnv~~~--------------- 77 (231)
T TIGR00736 16 LFAIVTLGGYNADRATYKASRDIEKRGRKE--FSFNLEEFNSYIIEQIKKAE-SRALVSVNVRFV--------------- 77 (231)
T ss_pred CcCEEEECCccCCHHHHHHHHHHHHcCCcc--cCcCcccHHHHHHHHHHHHh-hcCCEEEEEecC---------------
Confidence 3799999999887442 11111 13332 23344555566665 444888887421
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC---Chhhh
Q 036028 77 ISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR---SYKQR 152 (193)
Q Consensus 77 ~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt---s~eNR 152 (193)
-.+.|.++|+.+.+ ++|+||| ++.= +.++ -++- .+-..
T Consensus 78 ------------------------------~~ee~~~~a~~v~~-~~d~IdiN~gCP---~~~v----~~~g~G~~Ll~d 119 (231)
T TIGR00736 78 ------------------------------DLEEAYDVLLTIAE-HADIIEINAHCR---QPEI----TEIGIGQELLKN 119 (231)
T ss_pred ------------------------------CHHHHHHHHHHHhc-CCCEEEEECCCC---cHHH----cCCCCchhhcCC
Confidence 12467888888766 8999999 5420 0000 0011 22233
Q ss_pred hhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 153 KRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 153 ~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
-..+.++++++|+. +.||.++|
T Consensus 120 p~~l~~iv~av~~~----~~PVsvKi 141 (231)
T TIGR00736 120 KELLKEFLTKMKEL----NKPIFVKI 141 (231)
T ss_pred HHHHHHHHHHHHcC----CCcEEEEe
Confidence 35889999999943 36788888
No 65
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=74.75 E-value=4.7 Score=35.89 Aligned_cols=58 Identities=10% Similarity=0.001 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHH-----------HHHHHHHHHhCCCeEEEecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHH
Q 036028 97 RPLRTEEIPQIVNDF-----------RLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQ 165 (193)
Q Consensus 97 ~~mt~~eI~~ii~~f-----------~~AA~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~ 165 (193)
..++-++|+.|.+.| .+.|++|.++|+|+|-++.||+ .|+- . .+=..+++.+|++
T Consensus 221 ~~~~w~~i~~ir~~~~~pviiKgV~~~eda~~a~~~G~d~I~VSnhGG--rqld--------~----~~~~~~~L~ei~~ 286 (361)
T cd04736 221 ASFNWQDLRWLRDLWPHKLLVKGIVTAEDAKRCIELGADGVILSNHGG--RQLD--------D----AIAPIEALAEIVA 286 (361)
T ss_pred CcCCHHHHHHHHHhCCCCEEEecCCCHHHHHHHHHCCcCEEEECCCCc--CCCc--------C----CccHHHHHHHHHH
Confidence 357888999999988 6889999999999999966664 1211 1 1114667777777
Q ss_pred hcC
Q 036028 166 WQE 168 (193)
Q Consensus 166 ~vg 168 (193)
+++
T Consensus 287 ~~~ 289 (361)
T cd04736 287 ATY 289 (361)
T ss_pred HhC
Confidence 764
No 66
>PLN02535 glycolate oxidase
Probab=74.08 E-value=14 Score=32.87 Aligned_cols=64 Identities=23% Similarity=0.183 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHH-----------HHHHHHHHHhCCCeEEEecchhhHHhhcCCCCCCCC-ChhhhhhHHHHHHHHHH
Q 036028 97 RPLRTEEIPQIVNDF-----------RLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRR-SYKQRKRLRQDRVERLH 164 (193)
Q Consensus 97 ~~mt~~eI~~ii~~f-----------~~AA~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rt-s~eNR~Rf~~Eii~aIR 164 (193)
..+|-++|+.+.+.+ .+.|++|.++|+|+|-+..||- |. .. .--.+++|.+|+
T Consensus 208 ~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GG------------r~~d~---~~~t~~~L~ev~ 272 (364)
T PLN02535 208 ASLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNHGA------------RQLDY---SPATISVLEEVV 272 (364)
T ss_pred CCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCc------------CCCCC---ChHHHHHHHHHH
Confidence 357889999888866 4678999999999999955552 22 10 123467777788
Q ss_pred HhcCCCCCcEEE
Q 036028 165 QWQEPPPPPFLF 176 (193)
Q Consensus 165 ~~vg~~~~~~~~ 176 (193)
++++. +.+|+.
T Consensus 273 ~av~~-~ipVi~ 283 (364)
T PLN02535 273 QAVGG-RVPVLL 283 (364)
T ss_pred HHHhc-CCCEEe
Confidence 77765 356553
No 67
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=73.87 E-value=6.9 Score=34.70 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHH-----------HHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHH
Q 036028 98 PLRTEEIPQIVNDF-----------RLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQ 165 (193)
Q Consensus 98 ~mt~~eI~~ii~~f-----------~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~ 165 (193)
.++-++|+++++.+ .+.|++|.++|.|+|.+ ++.| +|. +...-..++|-+||+
T Consensus 211 ~~~w~~i~~~~~~~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGG----------r~~-----d~~~~~~~~L~~i~~ 275 (356)
T PF01070_consen 211 SLTWDDIEWIRKQWKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGG----------RQL-----DWGPPTIDALPEIRA 275 (356)
T ss_dssp T-SHHHHHHHHHHCSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTG----------TSS-----TTS-BHHHHHHHHHH
T ss_pred CCCHHHHHHHhcccCCceEEEecccHHHHHHHHhcCCCEEEecCCCc----------ccC-----ccccccccccHHHHh
Confidence 47788999999876 68899999999999999 5555 221 234457888999999
Q ss_pred hcCCCCCcEEEE
Q 036028 166 WQEPPPPPFLFS 177 (193)
Q Consensus 166 ~vg~~~~~~~~r 177 (193)
++++ +++|.+-
T Consensus 276 ~~~~-~~~i~~d 286 (356)
T PF01070_consen 276 AVGD-DIPIIAD 286 (356)
T ss_dssp HHTT-SSEEEEE
T ss_pred hhcC-CeeEEEe
Confidence 8886 4777654
No 68
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=73.72 E-value=3.7 Score=35.88 Aligned_cols=115 Identities=14% Similarity=0.222 Sum_probs=68.5
Q ss_pred hHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 036028 39 AWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAARNA 118 (193)
Q Consensus 39 ~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA~~a 118 (193)
.=+++++.+.+.| |++-|+|.+-++.-+..+....|+..|--... . ..+.+|.+|+++++.|++.
T Consensus 150 ~Gk~lV~~~N~Lg--IiiDlSH~s~kt~~Dvl~~s~~PviaSHSN~~----a-l~~h~RNl~D~qlkaI~~~-------- 214 (313)
T COG2355 150 FGKELVREMNELG--IIIDLSHLSDKTFWDVLDLSKAPVVASHSNAR----A-LVDHPRNLSDEQLKAIAET-------- 214 (313)
T ss_pred HHHHHHHHHHhcC--CEEEecccCCccHHHHHhccCCceEEecCCch----h-ccCCCCCCCHHHHHHHHhc--------
Confidence 4577888888888 88999999877654322122233333221111 0 1457899999999998764
Q ss_pred HHhCCCeEEEecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEcCcCCCC
Q 036028 119 IEAGDSNSDFSNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSLPTEWDS 184 (193)
Q Consensus 119 ~~AGfDgVEI~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri~~e~~~ 184 (193)
-|+ |-+ . ++.+|+.|.-|.|+|++. +.+-|+-+-+.+|.+ .|.++ +||.+
T Consensus 215 --gGv--Igv--~--~~~~fl~~~~~~~atldd----~v~hI~h~v~~~G~d--hVglG--sDf~g 264 (313)
T COG2355 215 --GGV--IGV--N--FIPAFLRPGGAARATLDD----LVRHIDHFVELVGID--HVGLG--SDFDG 264 (313)
T ss_pred --CCE--EEE--E--eehhhccCCCCCCCCHHH----HHHHHHHHHHhcCcc--eeEec--ccccC
Confidence 121 222 1 456788872134667764 455566666777853 45554 56544
No 69
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=73.60 E-value=42 Score=28.90 Aligned_cols=92 Identities=17% Similarity=0.201 Sum_probs=57.0
Q ss_pred HHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccC----------CCCCCCCCCCCCCCCCCCCCHHHHHH
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISST----------NKGVTPGLDGQDWSSPRPLRTEEIPQ 106 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS----------~~~~~~~~~g~~~~~~~~mt~~eI~~ 106 (193)
.+..+-+.++..+.++++++|+......-.. +...+.+. .+|.-. ... |.-+.
T Consensus 28 ~e~~~avi~AAee~~sPvIlq~~~~~~~~~~-----g~~~~~~~~~~~a~~~~~~VPV~l-----HLD--Hg~~~----- 90 (288)
T TIGR00167 28 LETINAVLEAAAEEKSPVIIQFSNGAAKYIA-----GLGAISAMVKAMSEAYPYGVPVAL-----HLD--HGASE----- 90 (288)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCcchhhccC-----CHHHHHHHHHHHHHhccCCCcEEE-----ECC--CCCCH-----
Confidence 5678889999999999999998664321100 00011110 111100 000 11122
Q ss_pred HHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHh
Q 036028 107 IVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQW 166 (193)
Q Consensus 107 ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~ 166 (193)
+..++|.++||+-|.+ +.|= ++|.=.+..+|+++-.+..
T Consensus 91 ------e~i~~ai~~GftSVMiDgS~l---------------p~eeNi~~T~~vv~~Ah~~ 130 (288)
T TIGR00167 91 ------EDCAQAVKAGFSSVMIDGSHE---------------PFEENIELTKKVVERAHKM 130 (288)
T ss_pred ------HHHHHHHHcCCCEEEecCCCC---------------CHHHHHHHHHHHHHHHHHc
Confidence 3467889999999999 8861 5677889999999987764
No 70
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=73.49 E-value=38 Score=29.16 Aligned_cols=92 Identities=16% Similarity=0.208 Sum_probs=56.5
Q ss_pred hHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCcccc--------CCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 036028 36 QVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISS--------TNKGVTPGLDGQDWSSPRPLRTEEIPQI 107 (193)
Q Consensus 36 ~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~p--------S~~~~~~~~~g~~~~~~~~mt~~eI~~i 107 (193)
..+..+-+.+++.+.++.+++|+...... + .+...+.+ +.+|.- . ..-|..+.+.
T Consensus 27 n~e~~~avi~AAe~~~sPvIl~~~~~~~~----~--~g~~~~~~~~~~~A~~~~vPV~-----l--HLDH~~~~e~---- 89 (283)
T PRK07998 27 NLETTISILNAIERSGLPNFIQIAPTNAQ----L--SGYDYIYEIVKRHADKMDVPVS-----L--HLDHGKTFED---- 89 (283)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECcHhHHh----h--CCHHHHHHHHHHHHHHCCCCEE-----E--ECcCCCCHHH----
Confidence 46688889999999999999999543211 0 11111111 111110 0 0012233333
Q ss_pred HHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHh
Q 036028 108 VNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQW 166 (193)
Q Consensus 108 i~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~ 166 (193)
+++|.++||+.|.+ +.| -++|.=.+..+|+++..+..
T Consensus 90 -------i~~Ai~~GftSVM~DgS~---------------l~~eeNi~~T~~vve~Ah~~ 127 (283)
T PRK07998 90 -------VKQAVRAGFTSVMIDGAA---------------LPFEENIAFTKEAVDFAKSY 127 (283)
T ss_pred -------HHHHHHcCCCEEEEeCCC---------------CCHHHHHHHHHHHHHHHHHc
Confidence 33678899999999 753 16777788999999988873
No 71
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=73.13 E-value=35 Score=27.75 Aligned_cols=85 Identities=16% Similarity=0.105 Sum_probs=59.7
Q ss_pred CHHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 036028 33 TKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFR 112 (193)
Q Consensus 33 ~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~ 112 (193)
.++.++...++++.+++.|..+.+.+.+.++. + .+.+.
T Consensus 103 ~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~-----------------------------------~-------~~~~~ 140 (237)
T PF00682_consen 103 REEALERIEEAVKYAKELGYEVAFGCEDASRT-----------------------------------D-------PEELL 140 (237)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEETTTGGS-----------------------------------S-------HHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeCccccccc-----------------------------------c-------HHHHH
Confidence 35668899999999999999997776554321 1 13456
Q ss_pred HHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 113 LAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
+.++++.++|.|.|-| =--|++ +| .-..++++++|+..++ .+|.+-.
T Consensus 141 ~~~~~~~~~g~~~i~l~Dt~G~~-----~P------------~~v~~lv~~~~~~~~~--~~l~~H~ 188 (237)
T PF00682_consen 141 ELAEALAEAGADIIYLADTVGIM-----TP------------EDVAELVRALREALPD--IPLGFHA 188 (237)
T ss_dssp HHHHHHHHHT-SEEEEEETTS-S------H------------HHHHHHHHHHHHHSTT--SEEEEEE
T ss_pred HHHHHHHHcCCeEEEeeCccCCc-----CH------------HHHHHHHHHHHHhccC--CeEEEEe
Confidence 6788888889999999 666765 22 1366899999999864 5666654
No 72
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=71.81 E-value=10 Score=32.06 Aligned_cols=69 Identities=9% Similarity=-0.041 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhHHhhcCCCCCCCC-ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc-C
Q 036028 102 EEIPQIVNDFRLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRR-SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL-P 179 (193)
Q Consensus 102 ~eI~~ii~~f~~AA~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rt-s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri-~ 179 (193)
..+++++|.-.+-|++.+++|||+|-+--+|- .|+. + + ..| ..-..--|+++|++.++ .||++-+ .
T Consensus 27 ~~~~~vid~A~~dA~~leegG~DavivEN~gD------~Pf~-k-~v~~~-tvaaMa~iv~~v~r~v~---iPvGvNVLr 94 (263)
T COG0434 27 GSLEAVIDRAVRDAAALEEGGVDAVIVENYGD------APFL-K-DVGPE-TVAAMAVIVREVVREVS---IPVGVNVLR 94 (263)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEeccCC------CCCC-C-CCChH-HHHHHHHHHHHHHHhcc---ccceeeeec
Confidence 37889999999999999999999997733322 3433 3 3 333 34455667778888775 5677766 4
Q ss_pred cCC
Q 036028 180 TEW 182 (193)
Q Consensus 180 ~e~ 182 (193)
.|-
T Consensus 95 Nd~ 97 (263)
T COG0434 95 NDA 97 (263)
T ss_pred ccc
Confidence 443
No 73
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=71.24 E-value=13 Score=33.90 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=33.6
Q ss_pred HHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEE
Q 036028 112 RLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFS 177 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~r 177 (193)
.+-|+.+.+||+|.|+| .+||+ .....+.|+.||+..+ +.+|.++
T Consensus 226 ~~r~~~L~~aG~d~I~vd~a~g~-------------------~~~~~~~i~~i~~~~~--~~~vi~G 271 (450)
T TIGR01302 226 KERAEALVKAGVDVIVIDSSHGH-------------------SIYVIDSIKEIKKTYP--DLDIIAG 271 (450)
T ss_pred HHHHHHHHHhCCCEEEEECCCCc-------------------HhHHHHHHHHHHHhCC--CCCEEEE
Confidence 35566778899999999 99971 1367888999998864 3666663
No 74
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=71.17 E-value=42 Score=28.92 Aligned_cols=91 Identities=11% Similarity=0.033 Sum_probs=57.1
Q ss_pred HHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCcccc--------CCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISS--------TNKGVTPGLDGQDWSSPRPLRTEEIPQIV 108 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~p--------S~~~~~~~~~g~~~~~~~~mt~~eI~~ii 108 (193)
.+..+-+.++..+.++.+++|+......-. +...+.+ +.+|.- .... |.-+
T Consensus 28 ~e~~~avi~AAee~~sPvIlq~s~~~~~~~------~~~~~~~~~~~~a~~~~VPVa-----lHLD--Hg~~-------- 86 (286)
T PRK12738 28 AETIQAILEVCSEMRSPVILAGTPGTFKHI------ALEEIYALCSAYSTTYNMPLA-----LHLD--HHES-------- 86 (286)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCcchhhhC------CHHHHHHHHHHHHHHCCCCEE-----EECC--CCCC--------
Confidence 567888999999999999999865332110 1111111 011110 0000 1112
Q ss_pred HHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHh
Q 036028 109 NDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQW 166 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~ 166 (193)
-+.+++|.++||+-|.+ +.|= ++|.=.++.+|+++-.+..
T Consensus 87 ---~e~i~~ai~~GFtSVM~DgS~l---------------p~eeNi~~T~evv~~Ah~~ 127 (286)
T PRK12738 87 ---LDDIRRKVHAGVRSAMIDGSHF---------------PFAENVKLVKSVVDFCHSQ 127 (286)
T ss_pred ---HHHHHHHHHcCCCeEeecCCCC---------------CHHHHHHHHHHHHHHHHHc
Confidence 23567788999999999 8741 5788889999999988874
No 75
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=71.05 E-value=8 Score=32.62 Aligned_cols=30 Identities=13% Similarity=0.061 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEE-ec
Q 036028 101 TEEIPQIVNDFRLAARNAIEAGDSNSDF-SN 130 (193)
Q Consensus 101 ~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~a 130 (193)
-.|+-...+.|-+--..|++-|||.||| -+
T Consensus 76 l~E~a~~q~~~~~yl~~~k~lGf~~IEiSdG 106 (244)
T PF02679_consen 76 LFEVAYQQGKFDEYLEECKELGFDAIEISDG 106 (244)
T ss_dssp HHHHHHHTT-HHHHHHHHHHCT-SEEEE--S
T ss_pred HHHHHHhcChHHHHHHHHHHcCCCEEEecCC
Confidence 3455545555666667789999999999 44
No 76
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=70.81 E-value=68 Score=27.58 Aligned_cols=93 Identities=15% Similarity=0.151 Sum_probs=58.1
Q ss_pred HHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-----
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDF----- 111 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f----- 111 (193)
.++++++++..-+.|+.-++=+...|-.. -||.+|-.++++..
T Consensus 24 ~~a~~~lv~~li~~Gv~gi~~~GttGE~~--------------------------------~Ls~eEr~~v~~~~v~~~~ 71 (299)
T COG0329 24 EEALRRLVEFLIAAGVDGLVVLGTTGESP--------------------------------TLTLEERKEVLEAVVEAVG 71 (299)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCccch--------------------------------hcCHHHHHHHHHHHHHHHC
Confidence 57999999999999977555444444221 23333333333333
Q ss_pred -----------------HHHHHHHHHhCCCeEEEecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcE
Q 036028 112 -----------------RLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPF 174 (193)
Q Consensus 112 -----------------~~AA~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~ 174 (193)
.+-|+.|++.|+|||-+ +.|++|+-+ -+-+.+-.++|-++++ -+.|
T Consensus 72 grvpviaG~g~~~t~eai~lak~a~~~Gad~il~----------v~PyY~k~~-----~~gl~~hf~~ia~a~~--lPvi 134 (299)
T COG0329 72 GRVPVIAGVGSNSTAEAIELAKHAEKLGADGILV----------VPPYYNKPS-----QEGLYAHFKAIAEAVD--LPVI 134 (299)
T ss_pred CCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEE----------eCCCCcCCC-----hHHHHHHHHHHHHhcC--CCEE
Confidence 34467899999999998 557788866 2345555666666662 2445
Q ss_pred EEEc
Q 036028 175 LFSL 178 (193)
Q Consensus 175 ~~ri 178 (193)
.+-+
T Consensus 135 lYN~ 138 (299)
T COG0329 135 LYNI 138 (299)
T ss_pred EEeC
Confidence 5554
No 77
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=70.79 E-value=49 Score=28.43 Aligned_cols=91 Identities=13% Similarity=0.091 Sum_probs=57.5
Q ss_pred HHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCcccc--------CCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISS--------TNKGVTPGLDGQDWSSPRPLRTEEIPQIV 108 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~p--------S~~~~~~~~~g~~~~~~~~mt~~eI~~ii 108 (193)
.+..+-+.++..+.++++++|+......-. +...+.+ +.+|.- .... |.-+.
T Consensus 26 ~e~~~avi~AAee~~sPvIlq~s~~~~~~~------~~~~~~~~~~~~a~~~~VPVa-----lHLD--Hg~~~------- 85 (282)
T TIGR01858 26 LETIQAVVETAAEMRSPVILAGTPGTFKHA------GTEYIVALCSAASTTYNMPLA-----LHLD--HHESL------- 85 (282)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCccHHhhC------CHHHHHHHHHHHHHHCCCCEE-----EECC--CCCCH-------
Confidence 467888999999999999999976432110 1011111 111110 0000 11122
Q ss_pred HHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHh
Q 036028 109 NDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQW 166 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~ 166 (193)
+.+++|.++||+-|.+ +.|- ++|.=.|..+|+++..+..
T Consensus 86 ----e~i~~ai~~GFtSVM~DgS~l---------------p~eeNi~~T~~vv~~Ah~~ 125 (282)
T TIGR01858 86 ----DDIRQKVHAGVRSAMIDGSHF---------------PFAQNVKLVKEVVDFCHRQ 125 (282)
T ss_pred ----HHHHHHHHcCCCEEeecCCCC---------------CHHHHHHHHHHHHHHHHHc
Confidence 3368999999999999 8741 5788889999999988874
No 78
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=70.78 E-value=16 Score=30.54 Aligned_cols=59 Identities=10% Similarity=0.046 Sum_probs=34.0
Q ss_pred HHHHHHHhCCCeEEE-ecchhhHHhhcCCCCC-CCCChhhhhhHHHHHHHHHHHh-cCCCCCcEEEEc
Q 036028 114 AARNAIEAGDSNSDF-SNLNYMLIFSIKSDVE-GRRSYKQRKRLRQDRVERLHQW-QEPPPPPFLFSL 178 (193)
Q Consensus 114 AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N-~Rts~eNR~Rf~~Eii~aIR~~-vg~~~~~~~~ri 178 (193)
+=++|.+.|++.||| +-.|-= + -|..- -. .+... -...+|+++||+. .-..++||++.+
T Consensus 34 ay~~AL~~GcR~vElDvwdg~d-g---ePvV~HG~-tlts~-i~f~dv~~~I~~~aF~~s~yPvIlsl 95 (229)
T cd08592 34 AYARCLRMGCRCIELDCWDGPD-G---MPIIYHGH-TLTSK-IKFMDVLKTIKEHAFVTSEYPVILSI 95 (229)
T ss_pred HHHHHHHhCCCEEEEEeecCCC-C---CEEEEeCC-cCCCC-cCHHHHHHHHHHHhccCCCCCEEEEE
Confidence 334578899999999 744310 0 00000 00 12222 2468999999984 222369999988
No 79
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=70.55 E-value=13 Score=31.71 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=44.4
Q ss_pred CHHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 036028 33 TKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFR 112 (193)
Q Consensus 33 ~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~ 112 (193)
+.++++.+.++.+.+|++|-.+++-..--|.. ... +++...+..+
T Consensus 125 e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~------------------------------~~~-----~~~~d~~~v~ 169 (265)
T COG1830 125 EREMIENISQVVEDAHELGMPLVAWAYPRGPA------------------------------IKD-----EYHRDADLVG 169 (265)
T ss_pred hHHHHHHHHHHHHHHHHcCCceEEEEeccCCc------------------------------ccc-----cccccHHHHH
Confidence 46889999999999999998777633211100 001 1345567789
Q ss_pred HHHHHHHHhCCCeEEE
Q 036028 113 LAARNAIEAGDSNSDF 128 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI 128 (193)
.||+.+.+-|.|.|-.
T Consensus 170 ~aaRlaaelGADIiK~ 185 (265)
T COG1830 170 YAARLAAELGADIIKT 185 (265)
T ss_pred HHHHHHHHhcCCeEee
Confidence 9999999999999988
No 80
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=69.88 E-value=24 Score=28.80 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=18.4
Q ss_pred HHhHHhHHHHHHHHHhcCCeEEEcc
Q 036028 34 KEQVEAWKPIVDAVHQKGGTFFCQL 58 (193)
Q Consensus 34 ~~~i~~~~~l~~~vh~~G~~i~~QL 58 (193)
++..+.++++.+.+|++|.++++..
T Consensus 105 ~~~~~~i~~v~~~~~~~g~~~iie~ 129 (235)
T cd00958 105 REMLEELARVAAEAHKYGLPLIAWM 129 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 4556677788888888888887744
No 81
>PRK12313 glycogen branching enzyme; Provisional
Probab=69.06 E-value=1.1e+02 Score=29.19 Aligned_cols=123 Identities=16% Similarity=0.082 Sum_probs=62.8
Q ss_pred HHhHHHHHHHHHhcCCeEEEcc--cCCccccCCCCCCCCCCccc-cCC-CCCCCCCCCCCCCC-CCCCCHHHHHHHHHHH
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQL--WHVGRVSTFGLQPNGKAPIS-STN-KGVTPGLDGQDWSS-PRPLRTEEIPQIVNDF 111 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL--~h~G~~~~~~~~~~~~~~~~-pS~-~~~~~~~~g~~~~~-~~~mt~~eI~~ii~~f 111 (193)
.+.+|+|++++|+.|.++++-+ +|.+........-++.+.+. +.+ .... . .+.. .-..+..++++.+
T Consensus 219 ~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~w~~~~~n~~~~~vr~~l--- 290 (633)
T PRK12313 219 PEDFMYLVDALHQNGIGVILDWVPGHFPKDDDGLAYFDGTPLYEYQDPRRAEN---P--DWGALNFDLGKNEVRSFL--- 290 (633)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCcccccccCCCcceeecCCCCCcC---C--CCCCcccCCCCHHHHHHH---
Confidence 5689999999999999999995 67765432110001111100 000 0000 0 0100 1122334444433
Q ss_pred HHHHHH-HHHhCCCeEEE-ecchhhHHhh-----cCCCCC-CCCChhhhhhHHHHHHHHHHHhcC
Q 036028 112 RLAARN-AIEAGDSNSDF-SNLNYMLIFS-----IKSDVE-GRRSYKQRKRLRQDRVERLHQWQE 168 (193)
Q Consensus 112 ~~AA~~-a~~AGfDgVEI-~ahGyLl~qF-----lSp~~N-~Rts~eNR~Rf~~Eii~aIR~~vg 168 (193)
.++++. +.+.|+||.=+ +++..|.-.. ..|..+ .+.+. .-..|+.++.+.||+.-+
T Consensus 291 ~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~fl~~~~~~v~~~~p 354 (633)
T PRK12313 291 ISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENL-EAIYFLQKLNEVVYLEHP 354 (633)
T ss_pred HHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCc-HHHHHHHHHHHHHHHHCC
Confidence 334444 45689999999 8764432111 011100 00022 347899999999998753
No 82
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=68.12 E-value=71 Score=27.49 Aligned_cols=83 Identities=14% Similarity=0.177 Sum_probs=0.0
Q ss_pred hHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHH-
Q 036028 36 QVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRP-LRTEEIPQIVNDFRL- 113 (193)
Q Consensus 36 ~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~-mt~~eI~~ii~~f~~- 113 (193)
..+..+-+.++..+.++.+++|+... ..+- +..+.+..+++.+++
T Consensus 27 n~e~~~avi~AAe~~~sPvIiq~~~~---------------------------------~~~~~~~~~~~~~~~~~~a~~ 73 (285)
T PRK07709 27 NLEWTQAILAAAEEEKSPVILGVSEG---------------------------------AARHMTGFKTVVAMVKALIEE 73 (285)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCcc---------------------------------hhhhcCCHHHHHHHHHHHHHH
Q ss_pred ------------------HHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHh
Q 036028 114 ------------------AARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQW 166 (193)
Q Consensus 114 ------------------AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~ 166 (193)
.+++|.++||+-|.+ +.|= ++|.=.+..+|+++-.+..
T Consensus 74 ~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS~l---------------p~eeNi~~Trevv~~Ah~~ 130 (285)
T PRK07709 74 MNITVPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHH---------------PFEENVETTKKVVEYAHAR 130 (285)
T ss_pred cCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCC---------------CHHHHHHHHHHHHHHHHHc
No 83
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=68.07 E-value=9.7 Score=30.23 Aligned_cols=44 Identities=11% Similarity=0.070 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhc
Q 036028 109 NDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQ 167 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~v 167 (193)
+.+.+.++.+.++|+|.||+ .+.|..+. | ..+..+++++||+..
T Consensus 11 ~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~-------~--------~~~~~~~v~~i~~~~ 55 (210)
T TIGR01163 11 ARLGEEVKAVEEAGADWIHVDVMDGHFVP-------N--------LTFGPPVLEALRKYT 55 (210)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCC-------C--------cccCHHHHHHHHhcC
Confidence 56788899999999999999 78875544 1 236788999999764
No 84
>PRK06801 hypothetical protein; Provisional
Probab=68.03 E-value=70 Score=27.54 Aligned_cols=92 Identities=16% Similarity=0.136 Sum_probs=56.7
Q ss_pred hHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCcccc--------CCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 036028 36 QVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISS--------TNKGVTPGLDGQDWSSPRPLRTEEIPQI 107 (193)
Q Consensus 36 ~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~p--------S~~~~~~~~~g~~~~~~~~mt~~eI~~i 107 (193)
..+..+.+.++..+.++.+++|+...... + .+...+.+ +.+|.- . +.-|..+
T Consensus 27 n~e~~~avi~AAe~~~~PvIl~~~~~~~~----~--~~~~~~~~~~~~~a~~~~vpV~-----l--HlDH~~~------- 86 (286)
T PRK06801 27 DSHFLRALFAAAKQERSPFIINIAEVHFK----Y--ISLESLVEAVKFEAARHDIPVV-----L--NLDHGLH------- 86 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEeCcchhh----c--CCHHHHHHHHHHHHHHCCCCEE-----E--ECCCCCC-------
Confidence 45678889999999999999999764321 0 01111111 011110 0 0011222
Q ss_pred HHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHh
Q 036028 108 VNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQW 166 (193)
Q Consensus 108 i~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~ 166 (193)
.+.+++|.++||+.|++ +-+- ++|.-.+..+++++..+..
T Consensus 87 ----~e~i~~Ai~~GftSVm~D~S~l---------------~~eeNi~~t~~v~~~a~~~ 127 (286)
T PRK06801 87 ----FEAVVRALRLGFSSVMFDGSTL---------------EYEENVRQTREVVKMCHAV 127 (286)
T ss_pred ----HHHHHHHHHhCCcEEEEcCCCC---------------CHHHHHHHHHHHHHHHHHc
Confidence 23356788999999999 7531 5677888999999988774
No 85
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=67.76 E-value=5.9 Score=32.81 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhCCCeEEE-ecch
Q 036028 111 FRLAARNAIEAGDSNSDF-SNLN 132 (193)
Q Consensus 111 f~~AA~~a~~AGfDgVEI-~ahG 132 (193)
+.+..+.++++|||+||| ....
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~~~~ 39 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMFPYD 39 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCC
Confidence 455678899999999999 6433
No 86
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=67.66 E-value=14 Score=31.42 Aligned_cols=60 Identities=18% Similarity=0.115 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhHHhhcCCCCCCCC-ChhhhhhHHHHHHHHHHHhcCCCCCcEEE
Q 036028 98 PLRTEEIPQIVNDFRLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRR-SYKQRKRLRQDRVERLHQWQEPPPPPFLF 176 (193)
Q Consensus 98 ~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rt-s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ 176 (193)
++|.+|| +++|..|.+||+..|-+.+- +..+ ..........|++++||++|.+ ..+.+
T Consensus 22 P~tpeEi-------a~~A~~c~~AGAa~vH~H~R------------~~~~G~~s~d~~~~~e~~~~IR~~~pd--~iv~~ 80 (272)
T PF05853_consen 22 PITPEEI-------AADAVACYEAGAAIVHIHAR------------DDEDGRPSLDPELYAEVVEAIRAACPD--LIVQP 80 (272)
T ss_dssp --SHHHH-------HHHHHHHHHHTESEEEE-EE-------------TTTS-EE--HHHHHHHHHHHHHHSTT--SEEEE
T ss_pred CCCHHHH-------HHHHHHHHHcCCcEEEeecC------------CCCCCCcCCCHHHHHHHHHHHHHHCCC--eEEEe
Confidence 4555555 78999999999999998220 1112 3334567889999999999753 56665
Q ss_pred Ec
Q 036028 177 SL 178 (193)
Q Consensus 177 ri 178 (193)
..
T Consensus 81 Tt 82 (272)
T PF05853_consen 81 TT 82 (272)
T ss_dssp ES
T ss_pred CC
Confidence 53
No 87
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=66.87 E-value=20 Score=30.72 Aligned_cols=46 Identities=11% Similarity=0.061 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEE
Q 036028 109 NDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLF 176 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ 176 (193)
+.+.+.++.+++.||+.|.| .+. ++ .-.+++|++||+++| + +.+.+
T Consensus 136 ~~~~~~~~~~~~~Gf~~iKik~g~----------------~~----~~d~~~v~~lr~~~g-~-~~l~v 182 (316)
T cd03319 136 EAMAAAAKKAAKRGFPLLKIKLGG----------------DL----EDDIERIRAIREAAP-D-ARLRV 182 (316)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCC----------------Ch----hhHHHHHHHHHHhCC-C-CeEEE
Confidence 44667888888999999999 642 01 225789999999998 3 44443
No 88
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=66.70 E-value=53 Score=28.26 Aligned_cols=92 Identities=12% Similarity=0.066 Sum_probs=59.5
Q ss_pred hHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCcccc--------CCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 036028 36 QVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISS--------TNKGVTPGLDGQDWSSPRPLRTEEIPQI 107 (193)
Q Consensus 36 ~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~p--------S~~~~~~~~~g~~~~~~~~mt~~eI~~i 107 (193)
..+..+.+.++..+.++.+++|+......- .+...+.+ +.+|.- . ..-|..+.
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~~~~~~~~------~g~~~~~~~~~~~a~~~~VPVa-----l--HLDH~~~~------ 87 (284)
T PRK12737 27 NLETLQVVVETAAELRSPVILAGTPGTFSY------AGTDYIVAIAEVAARKYNIPLA-----L--HLDHHEDL------ 87 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCccHHhh------CCHHHHHHHHHHHHHHCCCCEE-----E--ECCCCCCH------
Confidence 356888899999999999999997654321 11111111 011110 0 00122222
Q ss_pred HHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHh
Q 036028 108 VNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQW 166 (193)
Q Consensus 108 i~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~ 166 (193)
+..++|.++||+-|.+ +.|= ++|.=.+..+|+++..+..
T Consensus 88 -----e~i~~ai~~GftSVMiDgS~l---------------p~eeNi~~T~~vv~~Ah~~ 127 (284)
T PRK12737 88 -----DDIKKKVRAGIRSVMIDGSHL---------------SFEENIAIVKEVVEFCHRY 127 (284)
T ss_pred -----HHHHHHHHcCCCeEEecCCCC---------------CHHHHHHHHHHHHHHHHHc
Confidence 3448999999999999 8752 5788889999999998885
No 89
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=66.57 E-value=40 Score=28.72 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=20.9
Q ss_pred HHhHHHHHHHHHhcCCeEEEcccCCcc
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQLWHVGR 63 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL~h~G~ 63 (193)
.++++++++..-++|+.-++=+.+.|-
T Consensus 25 ~~~l~~li~~l~~~Gv~gi~v~GstGE 51 (296)
T TIGR03249 25 EAAYRENIEWLLGYGLEALFAAGGTGE 51 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCcC
Confidence 568999999999999877665555553
No 90
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=66.17 E-value=17 Score=31.35 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEE
Q 036028 98 PLRTEEIPQIVNDFRLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFS 177 (193)
Q Consensus 98 ~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~r 177 (193)
..+.+--+++.+.+.+..+.+ .-+|||-+.=||=+..+-+.. .| -+++++||+.+|+ +.+|.+-
T Consensus 74 ~v~~~aye~l~~eil~~l~~a--gp~Dgv~L~LHGAmv~e~~~D-------~E------G~Ll~rvR~~vGp-~vpI~~t 137 (292)
T PF07364_consen 74 PVTREAYERLRDEILDRLRAA--GPLDGVLLDLHGAMVAEGYDD-------GE------GDLLRRVRAIVGP-DVPIAAT 137 (292)
T ss_dssp -B-HHHHHHHHHHHHHHHHHS-----SEEEEEE-S---BSS-SS-------HH------HHHHHHHHHHHTT-TSEEEEE
T ss_pred cccHHHHHHHHHHHHHHHHhc--CCcCEEEEeccCcEeecCCCC-------ch------HHHHHHHHHHhCC-CCeEEEE
Confidence 457778888888888877655 349999998888777655543 23 5799999999999 5898887
Q ss_pred c
Q 036028 178 L 178 (193)
Q Consensus 178 i 178 (193)
+
T Consensus 138 l 138 (292)
T PF07364_consen 138 L 138 (292)
T ss_dssp E
T ss_pred e
Confidence 6
No 91
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=66.14 E-value=84 Score=27.04 Aligned_cols=28 Identities=11% Similarity=0.124 Sum_probs=21.6
Q ss_pred HHhHHHHHHHHHhcCCeEEEcccCCccc
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQLWHVGRV 64 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL~h~G~~ 64 (193)
.+.++++++.+-++|+.-++=+.+.|-.
T Consensus 28 ~~~l~~lv~~li~~Gv~Gi~v~GstGE~ 55 (309)
T cd00952 28 LDETARLVERLIAAGVDGILTMGTFGEC 55 (309)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcccccc
Confidence 5689999999999998877756555543
No 92
>PRK05402 glycogen branching enzyme; Provisional
Probab=66.04 E-value=1.3e+02 Score=29.15 Aligned_cols=126 Identities=12% Similarity=0.013 Sum_probs=63.2
Q ss_pred HHhHHHHHHHHHhcCCeEEEcc--cCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHH
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQL--WHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSP-RPLRTEEIPQIVNDFRL 113 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL--~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~-~~mt~~eI~~ii~~f~~ 113 (193)
.+.+|+|++++|+.|.+|++-+ +|.+.....-..-++...+.... +...... .+... -.++..++++.+ .+
T Consensus 314 ~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~-~~~~~~~--~w~~~~~n~~~~~v~~~l---~~ 387 (726)
T PRK05402 314 PDDFRYFVDACHQAGIGVILDWVPAHFPKDAHGLARFDGTALYEHAD-PREGEHP--DWGTLIFNYGRNEVRNFL---VA 387 (726)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCccchhccCCCcceeccC-CcCCccC--CCCCccccCCCHHHHHHH---HH
Confidence 5789999999999999999995 67765422110001111110000 0000000 01011 133344544433 33
Q ss_pred HHHHH-HHhCCCeEEE-ecchhhHHhhcC-C---CCCCCC--ChhhhhhHHHHHHHHHHHhcC
Q 036028 114 AARNA-IEAGDSNSDF-SNLNYMLIFSIK-S---DVEGRR--SYKQRKRLRQDRVERLHQWQE 168 (193)
Q Consensus 114 AA~~a-~~AGfDgVEI-~ahGyLl~qFlS-p---~~N~Rt--s~eNR~Rf~~Eii~aIR~~vg 168 (193)
+++.= .+.|+||.=+ ++...|--++-. + .-|... .-..-..|+.++.+.||+..+
T Consensus 388 ~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p 450 (726)
T PRK05402 388 NALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFP 450 (726)
T ss_pred HHHHHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHHCC
Confidence 44444 5689999999 764333212111 0 001111 112357899999999998754
No 93
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=66.04 E-value=13 Score=31.60 Aligned_cols=65 Identities=9% Similarity=0.005 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 102 EEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 102 ~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
..++++++.=.+-|+..+++|+|||-| --+. -|+ .++-..| -....--|+.+||+.++ .|+++-+
T Consensus 21 ~~~~~i~e~A~~ea~~l~~~GvD~viveN~~d-------~P~-~~~~~p~-tva~m~~i~~~v~~~~~---~p~Gvnv 86 (257)
T TIGR00259 21 DNLNAVIDKAWKDAMALEEGGVDAVMFENFFD-------APF-LKEVDPE-TVAAMAVIAGQLKSDVS---IPLGINV 86 (257)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEecCCC-------CCC-cCCCCHH-HHHHHHHHHHHHHHhcC---CCeeeee
Confidence 357889999999999999999999988 3332 232 2222333 34456667888999885 4566655
No 94
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=65.86 E-value=16 Score=33.92 Aligned_cols=44 Identities=18% Similarity=0.063 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEE
Q 036028 112 RLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLF 176 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ 176 (193)
.+-|..+.+||.|.|+| .+|| +..+..|.|+.||+..+ +.+|..
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G-------------------~s~~~~~~i~~ik~~~~--~~~v~a 287 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQG-------------------NSIYQIDMIKKLKSNYP--HVDIIA 287 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCC-------------------CchHHHHHHHHHHhhCC--CceEEE
Confidence 56677788999999999 9987 33456778888888764 255554
No 95
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=64.68 E-value=9.9 Score=33.98 Aligned_cols=65 Identities=20% Similarity=0.163 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHH-----------HHHHHHHHHHhCCCeEEEecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHH
Q 036028 97 RPLRTEEIPQIVND-----------FRLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQ 165 (193)
Q Consensus 97 ~~mt~~eI~~ii~~-----------f~~AA~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~ 165 (193)
..+|=++|+.+.+. ..+-|++|.++|.|+|.++.||- |. + +-.-=..++|.+|++
T Consensus 209 ~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGG------------rq-l-d~~~~t~~~L~ei~~ 274 (367)
T PLN02493 209 RTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGA------------RQ-L-DYVPATISALEEVVK 274 (367)
T ss_pred CCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHHcCCCEEEECCCCC------------CC-C-CCchhHHHHHHHHHH
Confidence 35677888877654 36899999999999999944442 22 0 011234778888888
Q ss_pred hcCCCCCcEEE
Q 036028 166 WQEPPPPPFLF 176 (193)
Q Consensus 166 ~vg~~~~~~~~ 176 (193)
++++ ..+|.+
T Consensus 275 av~~-~~~vi~ 284 (367)
T PLN02493 275 ATQG-RIPVFL 284 (367)
T ss_pred HhCC-CCeEEE
Confidence 8775 366654
No 96
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=64.62 E-value=6.3 Score=32.42 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhCCCeEEE-ec
Q 036028 111 FRLAARNAIEAGDSNSDF-SN 130 (193)
Q Consensus 111 f~~AA~~a~~AGfDgVEI-~a 130 (193)
+.++.+.++++||||||| .-
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~ 36 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFP 36 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCC
Confidence 556777888999999999 63
No 97
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=64.51 E-value=68 Score=27.66 Aligned_cols=97 Identities=18% Similarity=0.082 Sum_probs=55.1
Q ss_pred hHHhHHHHHHHHHhcCCeEEEcccCCccccCC--CCCCCCCCcccc-C--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 036028 36 QVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTF--GLQPNGKAPISS-T--NKGVTPGLDGQDWSSPRPLRTEEIPQIVND 110 (193)
Q Consensus 36 ~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~--~~~~~~~~~~~p-S--~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~ 110 (193)
..+.++-+.+++.+.++.+++|+......-.. +....-...++- + .+|.- . +.-|. +.+
T Consensus 27 n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~-----l--HLDH~-~~~-------- 90 (293)
T PRK07315 27 NLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVA-----I--HLDHG-HYE-------- 90 (293)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEE-----E--ECCCC-CHH--------
Confidence 35678889999999999999999764221100 000000000000 0 11110 0 01122 322
Q ss_pred HHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHh
Q 036028 111 FRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQW 166 (193)
Q Consensus 111 f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~ 166 (193)
.++.|.++||+-|++ +-|- ++|...+..+++++-.+..
T Consensus 91 ---~i~~ai~~GftSVm~d~S~l---------------~~eEni~~t~~v~~~a~~~ 129 (293)
T PRK07315 91 ---DALECIEVGYTSIMFDGSHL---------------PVEENLKLAKEVVEKAHAK 129 (293)
T ss_pred ---HHHHHHHcCCCEEEEcCCCC---------------CHHHHHHHHHHHHHHHHHc
Confidence 334678899999999 6532 6677888999998877763
No 98
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=64.43 E-value=78 Score=27.27 Aligned_cols=82 Identities=15% Similarity=0.220 Sum_probs=0.0
Q ss_pred hHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHH
Q 036028 36 QVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLR-TEEIPQIVNDFRLA 114 (193)
Q Consensus 36 ~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt-~~eI~~ii~~f~~A 114 (193)
..+..+-+.++..+.++.+++|+.... .+-+. .+.+..+++.+++.
T Consensus 27 n~e~~~avi~AAee~~sPvIl~~~~~~---------------------------------~~~~~~~~~~~~~~~~~A~~ 73 (286)
T PRK08610 27 NLEFTQAILEASQEENAPVILGVSEGA---------------------------------ARYMSGFYTVVKMVEGLMHD 73 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCccH---------------------------------HhhcCcHHHHHHHHHHHHHH
Q ss_pred -------------------HHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHH
Q 036028 115 -------------------ARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQ 165 (193)
Q Consensus 115 -------------------A~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~ 165 (193)
+++|.++||+-|.+ +.|= ++|.-.+..+|+++..+.
T Consensus 74 ~~~~vPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS~l---------------~~eeNi~~T~~vve~Ah~ 129 (286)
T PRK08610 74 LNITIPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHS---------------PFEENVATTKKVVEYAHE 129 (286)
T ss_pred cCCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCC---------------CHHHHHHHHHHHHHHHHH
No 99
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=64.18 E-value=25 Score=31.22 Aligned_cols=64 Identities=20% Similarity=0.075 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHH-----------HHHHHHHHHhCCCeEEEecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHh
Q 036028 98 PLRTEEIPQIVNDF-----------RLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQW 166 (193)
Q Consensus 98 ~mt~~eI~~ii~~f-----------~~AA~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~ 166 (193)
.+|-++|+++.+.+ .+-|++|.++|.|+|-+..||- .|+- ...-.+++|.+|+++
T Consensus 207 ~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGG--r~ld------------~~~~~~~~l~~i~~a 272 (351)
T cd04737 207 KLSPADIEFIAKISGLPVIVKGIQSPEDADVAINAGADGIWVSNHGG--RQLD------------GGPASFDSLPEIAEA 272 (351)
T ss_pred CCCHHHHHHHHHHhCCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCC--ccCC------------CCchHHHHHHHHHHH
Confidence 47888998888754 4788999999999999954551 2211 111345677788888
Q ss_pred cCCCCCcEEE
Q 036028 167 QEPPPPPFLF 176 (193)
Q Consensus 167 vg~~~~~~~~ 176 (193)
+++ +++|.+
T Consensus 273 ~~~-~i~vi~ 281 (351)
T cd04737 273 VNH-RVPIIF 281 (351)
T ss_pred hCC-CCeEEE
Confidence 865 366654
No 100
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=64.08 E-value=63 Score=27.81 Aligned_cols=83 Identities=13% Similarity=0.079 Sum_probs=0.0
Q ss_pred hHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 036028 36 QVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAA 115 (193)
Q Consensus 36 ~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA 115 (193)
..+..+-+.++..+.++++++|+.... .+-+..+.+-.++..+++.+
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~~~~~---------------------------------~~~~g~~~~~~~~~~~A~~~ 73 (284)
T PRK09195 27 NLETMQVVVETAAELHSPVIIAGTPGT---------------------------------FSYAGTEYLLAIVSAAAKQY 73 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcChhH---------------------------------HhhCCHHHHHHHHHHHHHHC
Q ss_pred -----------------HHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHh
Q 036028 116 -----------------RNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQW 166 (193)
Q Consensus 116 -----------------~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~ 166 (193)
++|.++||+-|.+ +.|= ++|.=.+..+|+++-.+..
T Consensus 74 ~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~DgS~l---------------~~eeNi~~T~~vv~~Ah~~ 127 (284)
T PRK09195 74 HHPLALHLDHHEKFDDIAQKVRSGVRSVMIDGSHL---------------PFAQNISLVKEVVDFCHRF 127 (284)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCEEEeCCCCC---------------CHHHHHHHHHHHHHHHHHc
No 101
>PLN00038 photosystem I reaction center subunit XI (PsaL); Provisional
Probab=63.66 E-value=1.2 Score=34.96 Aligned_cols=23 Identities=4% Similarity=-0.178 Sum_probs=17.0
Q ss_pred CCCeEEE-ecchhhH-Hhh--cCCCCC
Q 036028 122 GDSNSDF-SNLNYML-IFS--IKSDVE 144 (193)
Q Consensus 122 GfDgVEI-~ahGyLl-~qF--lSp~~N 144 (193)
=+.|+|| .||||+| .=| |-|+-|
T Consensus 50 ~~RGLEiGmAHGYfL~GPF~klGPLRn 76 (165)
T PLN00038 50 LLRGVEVGLAHGFLLVGPFVKLGPLRN 76 (165)
T ss_pred hhhhhhhhhhceeeeechHHhhCCCcC
Confidence 3569999 9999954 666 467755
No 102
>PRK00704 photosystem I reaction center protein subunit XI; Provisional
Probab=63.41 E-value=1.2 Score=34.89 Aligned_cols=22 Identities=9% Similarity=-0.100 Sum_probs=16.5
Q ss_pred CCeEEE-ecchhhH-Hhh--cCCCCC
Q 036028 123 DSNSDF-SNLNYML-IFS--IKSDVE 144 (193)
Q Consensus 123 fDgVEI-~ahGyLl-~qF--lSp~~N 144 (193)
+.|+|| .||||+| .=| |-|+-|
T Consensus 42 ~RGLEiGmAHGYfL~GPF~~lGPLRn 67 (160)
T PRK00704 42 FRGLETGMAHGYLLYGPFAKLGPLRD 67 (160)
T ss_pred hhhhHhhhhceeeeechHHHhCCCcC
Confidence 459999 9999954 666 467755
No 103
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=63.40 E-value=36 Score=30.29 Aligned_cols=109 Identities=8% Similarity=-0.018 Sum_probs=70.0
Q ss_pred hHHhHHHHHHHHHhcCCeEEEcccCCccccCC-CCCCC-C--CCc-----ccc--------CCCCCCCCCCCCCCCCCCC
Q 036028 36 QVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTF-GLQPN-G--KAP-----ISS--------TNKGVTPGLDGQDWSSPRP 98 (193)
Q Consensus 36 ~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~-~~~~~-~--~~~-----~~p--------S~~~~~~~~~g~~~~~~~~ 98 (193)
..+..+-+.+++.+..+.+++|+......-.. ...+. + ... +++ +.+|.- . ..-|.
T Consensus 30 n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPVa-----l--HLDHg 102 (350)
T PRK09197 30 GTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHYGVPVI-----L--HTDHC 102 (350)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEE-----E--ECCCC
Confidence 45678889999999999999999764332111 00000 0 000 000 111110 0 11133
Q ss_pred CC--HHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHh
Q 036028 99 LR--TEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQW 166 (193)
Q Consensus 99 mt--~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~ 166 (193)
-+ .+.|++.++.=.+...+|.++||+-|.+ +.| -++|.-.|+.+||++..+..
T Consensus 103 ~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~---------------lpfEeNI~~TkevVe~Ah~~ 158 (350)
T PRK09197 103 AKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSE---------------EPLEENIEICSKYLERMAKA 158 (350)
T ss_pred CCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCC---------------CCHHHHHHHHHHHHHHHHHc
Confidence 44 6678888888778888999999999999 875 16788899999999988853
No 104
>CHL00120 psaL photosystem I subunit XI; Validated
Probab=63.36 E-value=1.2 Score=34.31 Aligned_cols=22 Identities=9% Similarity=-0.090 Sum_probs=16.4
Q ss_pred CCeEEE-ecchhhH-Hhh--cCCCCC
Q 036028 123 DSNSDF-SNLNYML-IFS--IKSDVE 144 (193)
Q Consensus 123 fDgVEI-~ahGyLl-~qF--lSp~~N 144 (193)
+.|+|| .||||+| .=| |-|+-|
T Consensus 45 ~RGLEiGmAHGYfL~GPf~~lGPLRn 70 (143)
T CHL00120 45 LRGLEIGMAHGYFLIGPFYKLGPLRN 70 (143)
T ss_pred hhhhHhhhhceeeeechHHhhCCCcC
Confidence 469999 9999954 666 467655
No 105
>PRK06233 hypothetical protein; Provisional
Probab=62.83 E-value=64 Score=28.63 Aligned_cols=90 Identities=6% Similarity=0.098 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEE-ec-chhhHHhhcCCCCCCCC--ChhhhhhHHHHHHHHHHHhcCCCCCcEEE
Q 036028 101 TEEIPQIVNDFRLAARNAIEAGDSNSDF-SN-LNYMLIFSIKSDVEGRR--SYKQRKRLRQDRVERLHQWQEPPPPPFLF 176 (193)
Q Consensus 101 ~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~a-hGyLl~qFlSp~~N~Rt--s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ 176 (193)
.+-+.+|.+.|.+..+...+||++.||| -. -.||.+...-....-+. ++...+.-.++++..+-+.++. +..|.+
T Consensus 163 eel~~dlA~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~p~-d~~i~~ 241 (372)
T PRK06233 163 DDYLDDLAQAYHDTIQHFYDLGARYIQLDDTTWAYLISKLNDTENDPKEHQKYVKLAEDAVYVINKALADLPE-DLTVTT 241 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEcCCCHHhhhccccccccchhhhhhHHHHHHHHHHHHHHHHhCCCc-CCEEEE
Confidence 4556689999999999999999999999 54 35555432211000000 2222333334455555555543 344544
Q ss_pred Ec-CcCCCCCcccccc
Q 036028 177 SL-PTEWDSSISLTGS 191 (193)
Q Consensus 177 ri-~~e~~~~~~~~~~ 191 (193)
=+ --+|.+....+|+
T Consensus 242 H~C~Gn~~~~~~~~g~ 257 (372)
T PRK06233 242 HICRGNFKSTYLFSGG 257 (372)
T ss_pred EeeCCCCCCcccccCc
Confidence 44 3455544433443
No 106
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=62.54 E-value=52 Score=27.71 Aligned_cols=83 Identities=12% Similarity=0.067 Sum_probs=46.8
Q ss_pred HHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 036028 34 KEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRL 113 (193)
Q Consensus 34 ~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~ 113 (193)
..+...++++++..|+.|..+.+-+-.-=.+-. ...-++.-.+-.. .| +....++..+ .+-++.+..
T Consensus 109 ~~~~~~l~~~i~~L~~~gIrVSLFidP~~~qi~------~A~~~GAd~VELh---TG---~yA~a~~~~~-~~el~~~~~ 175 (239)
T PRK05265 109 AGQFDKLKPAIARLKDAGIRVSLFIDPDPEQIE------AAAEVGADRIELH---TG---PYADAKTEAE-AAELERIAK 175 (239)
T ss_pred hcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH------HHHHhCcCEEEEe---ch---hhhcCCCcch-HHHHHHHHH
Confidence 467889999999999999877765521100000 0000011011000 11 1122223222 333689999
Q ss_pred HHHHHHHhCCCeEEE-ecch
Q 036028 114 AARNAIEAGDSNSDF-SNLN 132 (193)
Q Consensus 114 AA~~a~~AGfDgVEI-~ahG 132 (193)
+|+.|.+. |+++ ++||
T Consensus 176 aa~~a~~l---GL~VnAGHg 192 (239)
T PRK05265 176 AAKLAASL---GLGVNAGHG 192 (239)
T ss_pred HHHHHHHc---CCEEecCCC
Confidence 99999999 5899 9999
No 107
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=62.52 E-value=13 Score=32.87 Aligned_cols=35 Identities=23% Similarity=0.079 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHH-----------HHHHHHHHHhCCCeEEEecch
Q 036028 98 PLRTEEIPQIVNDF-----------RLAARNAIEAGDSNSDFSNLN 132 (193)
Q Consensus 98 ~mt~~eI~~ii~~f-----------~~AA~~a~~AGfDgVEI~ahG 132 (193)
..+-++|+++.+.+ .+.|++|.++|.|+|-+..||
T Consensus 199 ~~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhg 244 (344)
T cd02922 199 TLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHG 244 (344)
T ss_pred CCCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcCCCEEEEECCC
Confidence 46788999999877 889999999999999994454
No 108
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=62.40 E-value=19 Score=30.23 Aligned_cols=82 Identities=17% Similarity=0.161 Sum_probs=46.4
Q ss_pred HHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCC--CCCCCCCCCCCCC-CHHHHHH-HHH
Q 036028 34 KEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTP--GLDGQDWSSPRPL-RTEEIPQ-IVN 109 (193)
Q Consensus 34 ~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~--~~~g~~~~~~~~m-t~~eI~~-ii~ 109 (193)
..+...++++++..|+.|.++.+=+-.-=.+ .-.......+. ...| +..... ..++.++ +.+
T Consensus 107 ~~~~~~l~~~i~~L~~~gIrvSLFiDP~~~q-----------i~~A~~~Gad~VELhTG---~yA~a~~~~~~~~~ell~ 172 (239)
T PF03740_consen 107 AGNRDRLKPVIKRLKDAGIRVSLFIDPDPEQ-----------IEAAKELGADRVELHTG---PYANAFDDAEEAEEELLE 172 (239)
T ss_dssp CGGHHHHHHHHHHHHHTT-EEEEEE-S-HHH-----------HHHHHHTT-SEEEEETH---HHHHHSSHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhCCCEEEEEeCCCHHH-----------HHHHHHcCCCEEEEehh---HhhhhcCCHHHHHHHHHH
Confidence 4567999999999999999888765321000 00000000000 0001 112222 2344554 579
Q ss_pred HHHHHHHHHHHhCCCeEEE-ecch
Q 036028 110 DFRLAARNAIEAGDSNSDF-SNLN 132 (193)
Q Consensus 110 ~f~~AA~~a~~AGfDgVEI-~ahG 132 (193)
.+..||+.|.+.| +++ ++||
T Consensus 173 ~l~~aa~~a~~lG---L~VnAGHg 193 (239)
T PF03740_consen 173 RLRDAARYAHELG---LGVNAGHG 193 (239)
T ss_dssp HHHHHHHHHHHTT----EEEEETT
T ss_pred HHHHHHHHHHHcC---CEEecCCC
Confidence 9999999999996 799 9998
No 109
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=62.38 E-value=7.2 Score=32.56 Aligned_cols=20 Identities=15% Similarity=0.006 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhCCCeEEE-ec
Q 036028 111 FRLAARNAIEAGDSNSDF-SN 130 (193)
Q Consensus 111 f~~AA~~a~~AGfDgVEI-~a 130 (193)
+.++.+.++++|||+||| ..
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~ 43 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVD 43 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecC
Confidence 567788899999999999 54
No 110
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=61.82 E-value=61 Score=28.42 Aligned_cols=52 Identities=17% Similarity=0.111 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 109 NDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
+.+.+-|+.+.++|.|.|-| =-.|++. | .-+.++++++|+++++ +.+|.+=.
T Consensus 144 e~l~~~a~~~~~~Ga~~i~i~DT~G~~~-----P------------~~v~~~v~~l~~~l~~-~i~ig~H~ 196 (337)
T PRK08195 144 EKLAEQAKLMESYGAQCVYVVDSAGALL-----P------------EDVRDRVRALRAALKP-DTQVGFHG 196 (337)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCCCCCC-----H------------HHHHHHHHHHHHhcCC-CCeEEEEe
Confidence 44566688888899999888 5556432 2 2466778888888865 35665543
No 111
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=61.60 E-value=64 Score=30.22 Aligned_cols=108 Identities=12% Similarity=0.066 Sum_probs=57.3
Q ss_pred HHhHHHHHHHHHhcCCeEEEcc--cCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQL--WHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLA 114 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL--~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~A 114 (193)
.+.+|+|++++|++|.++++-+ +|.|..+... ....| -..... ..+ +...-..+..+=..+.+-+.++
T Consensus 159 ~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~~------~~~~~-y~~~~~-~~~--wg~~~n~~~~~~~~vr~~i~~~ 228 (542)
T TIGR02402 159 PDDLKALVDAAHGLGLGVILDVVYNHFGPEGNYL------PRYAP-YFTDRY-STP--WGAAINFDGPGSDEVRRYILDN 228 (542)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEccCCCCCccccc------cccCc-cccCCC-CCC--CCCccccCCCcHHHHHHHHHHH
Confidence 5789999999999999999986 6766543211 11122 000000 000 1011111212111222333344
Q ss_pred HHH-HHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcC
Q 036028 115 ARN-AIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQE 168 (193)
Q Consensus 115 A~~-a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg 168 (193)
++. +++-|+||.=+ +++. |.. . .-..|+.++-+++|+..+
T Consensus 229 ~~~W~~e~~iDGfR~D~~~~-~~~----------~---~~~~~l~~~~~~~~~~~p 270 (542)
T TIGR02402 229 ALYWLREYHFDGLRLDAVHA-IAD----------T---SAKHILEELAREVHELAA 270 (542)
T ss_pred HHHHHHHhCCcEEEEeCHHH-hcc----------c---cHHHHHHHHHHHHHHHCC
Confidence 443 45689999999 8864 221 0 114688888888887654
No 112
>PLN02979 glycolate oxidase
Probab=61.29 E-value=13 Score=33.33 Aligned_cols=65 Identities=20% Similarity=0.163 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHH-----------HHHHHHHHHHhCCCeEEEecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHH
Q 036028 97 RPLRTEEIPQIVND-----------FRLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQ 165 (193)
Q Consensus 97 ~~mt~~eI~~ii~~-----------f~~AA~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~ 165 (193)
..+|=++|+.+.+. ..+-|++|.++|.|+|.++.||- |. + +..-=..+++.+|++
T Consensus 208 ~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGG------------rq-l-d~~p~t~~~L~ei~~ 273 (366)
T PLN02979 208 RTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGA------------RQ-L-DYVPATISALEEVVK 273 (366)
T ss_pred CCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCc------------CC-C-CCchhHHHHHHHHHH
Confidence 35788889888764 36889999999999999944442 22 0 011124778888888
Q ss_pred hcCCCCCcEEE
Q 036028 166 WQEPPPPPFLF 176 (193)
Q Consensus 166 ~vg~~~~~~~~ 176 (193)
++++ ..+|.+
T Consensus 274 ~~~~-~~~Vi~ 283 (366)
T PLN02979 274 ATQG-RIPVFL 283 (366)
T ss_pred HhCC-CCeEEE
Confidence 8875 366654
No 113
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=60.89 E-value=65 Score=28.11 Aligned_cols=83 Identities=14% Similarity=0.155 Sum_probs=0.0
Q ss_pred hHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 036028 36 QVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAA 115 (193)
Q Consensus 36 ~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA 115 (193)
..+.++-+++++.+.++.+++|+... ..+-+..+.+..+++.+++.+
T Consensus 26 n~e~~~avi~AAe~~~sPvIlq~s~~---------------------------------~~~~~g~~~~~~~~~~~a~~~ 72 (307)
T PRK05835 26 NFEMLNAIFEAGNEENSPLFIQASEG---------------------------------AIKYMGIDMAVGMVKIMCERY 72 (307)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCcc---------------------------------HHhhCChHHHHHHHHHHHHhc
Q ss_pred H------------------HHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHh
Q 036028 116 R------------------NAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQW 166 (193)
Q Consensus 116 ~------------------~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~ 166 (193)
. +|.++||+-|.+ +.|= ++|.-.+..+++++-.+..
T Consensus 73 ~~VPValHLDHg~~~e~i~~ai~~GftSVM~DgS~l---------------~~eeNi~~T~~vve~Ah~~ 127 (307)
T PRK05835 73 PHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHH---------------AFEENLELTSKVVKMAHNA 127 (307)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCC---------------CHHHHHHHHHHHHHHHHHc
No 114
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=60.82 E-value=98 Score=26.62 Aligned_cols=82 Identities=17% Similarity=0.109 Sum_probs=0.0
Q ss_pred hHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--
Q 036028 36 QVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRL-- 113 (193)
Q Consensus 36 ~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~-- 113 (193)
..+..+-+.++..+.++.+++|+.... ..-+..+.+-.++..+++
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~~~~~---------------------------------~~~~g~~~~~~~~~~~A~~~ 73 (284)
T PRK12857 27 NMEIVQAIVAAAEAEKSPVIIQASQGA---------------------------------IKYAGIEYISAMVRTAAEKA 73 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEechhH---------------------------------hhhCCHHHHHHHHHHHHHHC
Q ss_pred ---------------HHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHH
Q 036028 114 ---------------AARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQ 165 (193)
Q Consensus 114 ---------------AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~ 165 (193)
..++|.++||+-|.+ +.|= ++|.=.|..+|+++..+.
T Consensus 74 ~VPValHLDH~~~~e~i~~ai~~GftSVM~DgS~l---------------p~eeNi~~T~~vv~~Ah~ 126 (284)
T PRK12857 74 SVPVALHLDHGTDFEQVMKCIRNGFTSVMIDGSKL---------------PLEENIALTKKVVEIAHA 126 (284)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCeEEEeCCCC---------------CHHHHHHHHHHHHHHHHH
No 115
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=60.13 E-value=24 Score=30.00 Aligned_cols=57 Identities=9% Similarity=0.130 Sum_probs=33.5
Q ss_pred HHHHHhCCCeEEE-ecchhhHHhhcCCCCC-CCCChhhhhhHHHHHHHHHHHh-cCCCCCcEEEEc
Q 036028 116 RNAIEAGDSNSDF-SNLNYMLIFSIKSDVE-GRRSYKQRKRLRQDRVERLHQW-QEPPPPPFLFSL 178 (193)
Q Consensus 116 ~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N-~Rts~eNR~Rf~~Eii~aIR~~-vg~~~~~~~~ri 178 (193)
++|.+.|++.||| +-.|-=- -|..- -. .+-.. -...+|+++||+. .-..++||++.+
T Consensus 36 ~~aL~~GcR~vElD~w~g~~g----epvV~Hg~-tlts~-i~f~dv~~~I~~~aF~~s~yPvIlsl 95 (260)
T cd08597 36 VRALQRGCRCVELDCWDGPNG----EPVIYHGH-TLTSK-ISFRSVIEAINEYAFVASEYPLILCI 95 (260)
T ss_pred HHHHHhCCCEEEEEeEcCCCC----CEEEEeCC-ccccc-eEHHHHHHHHHHHhccCCCCCEEEEE
Confidence 6677899999999 7544100 00000 00 11111 2568999999984 222369999987
No 116
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=59.87 E-value=36 Score=30.29 Aligned_cols=59 Identities=10% Similarity=0.022 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 109 NDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
+.+++.+....++|.|+|=. +. +-+|.++ ++|.|.+...++++++.++.|. ...+..-+
T Consensus 146 ~~la~~~~~l~~gGvD~Ikdde~---~ge~~~~-------~~eER~~~v~~av~~a~~~TG~-~~~y~~ni 205 (367)
T cd08205 146 EELAELAYELALGGIDLIKDDEL---LADQPYA-------PFEERVRACMEAVRRANEETGR-KTLYAPNI 205 (367)
T ss_pred HHHHHHHHHHHhcCCCeeecccc---ccCcccC-------CHHHHHHHHHHHHHHHHHhhCC-cceEEEEc
Confidence 33444555566789999866 44 3333333 5689999999999999999987 35666655
No 117
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=59.77 E-value=1.1e+02 Score=26.18 Aligned_cols=92 Identities=14% Similarity=0.101 Sum_probs=55.3
Q ss_pred hHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCcccc--------CCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 036028 36 QVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISS--------TNKGVTPGLDGQDWSSPRPLRTEEIPQI 107 (193)
Q Consensus 36 ~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~p--------S~~~~~~~~~g~~~~~~~~mt~~eI~~i 107 (193)
..+..+-+.++..+.++.+++|+......-. +...+.+ +.+|.- . +.-|.-+.
T Consensus 27 n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~------~~~~~~~~~~~~a~~~~vpv~-----l--HlDH~~~~------ 87 (281)
T PRK06806 27 NMEMVMGAIKAAEELNSPIILQIAEVRLNHS------PLHLIGPLMVAAAKQAKVPVA-----V--HFDHGMTF------ 87 (281)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcchhccC------ChHHHHHHHHHHHHHCCCCEE-----E--ECCCCCCH------
Confidence 3567788999999999999999975432100 1011110 111110 0 00112222
Q ss_pred HHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHh
Q 036028 108 VNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQW 166 (193)
Q Consensus 108 i~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~ 166 (193)
+.++.|.++||+.|++ +-+- +++...+..+++++-.++.
T Consensus 88 -----e~i~~Al~~G~tsVm~d~s~~---------------~~~eni~~t~~v~~~a~~~ 127 (281)
T PRK06806 88 -----EKIKEALEIGFTSVMFDGSHL---------------PLEENIQKTKEIVELAKQY 127 (281)
T ss_pred -----HHHHHHHHcCCCEEEEcCCCC---------------CHHHHHHHHHHHHHHHHHc
Confidence 2445588999999999 6531 5677788999999888875
No 118
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=59.57 E-value=13 Score=31.54 Aligned_cols=18 Identities=17% Similarity=-0.021 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhCCCeEEE
Q 036028 111 FRLAARNAIEAGDSNSDF 128 (193)
Q Consensus 111 f~~AA~~a~~AGfDgVEI 128 (193)
|.+--..|+++|||.||+
T Consensus 20 W~erl~~AK~~GFDFvEm 37 (287)
T COG3623 20 WLERLALAKELGFDFVEM 37 (287)
T ss_pred HHHHHHHHHHcCCCeEEE
Confidence 444556789999999999
No 119
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=59.57 E-value=29 Score=26.71 Aligned_cols=19 Identities=21% Similarity=0.093 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhCCCeEEE-e
Q 036028 111 FRLAARNAIEAGDSNSDF-S 129 (193)
Q Consensus 111 f~~AA~~a~~AGfDgVEI-~ 129 (193)
+.+-++.+.++|.|||++ +
T Consensus 15 ~~~~~~~~~~~gv~gi~~~g 34 (201)
T cd00945 15 IAKLCDEAIEYGFAAVCVNP 34 (201)
T ss_pred HHHHHHHHHHhCCcEEEECH
Confidence 444555666699999999 6
No 120
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=59.46 E-value=11 Score=33.51 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC----ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEcCcCCC
Q 036028 109 NDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR----SYKQRKRLRQDRVERLHQWQEPPPPPFLFSLPTEWD 183 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt----s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri~~e~~ 183 (193)
+.+..||+.+..-+ |||.| ++.= +.+=+|. .|-+-..++-|+|.+||+.++. +..+-+||.+|.+
T Consensus 86 ~~ll~Aa~lv~~y~-D~idlNcGCP--------q~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~-pVs~KIRI~~d~~ 155 (358)
T KOG2335|consen 86 ENLLKAARLVQPYC-DGIDLNCGCP--------QKVAKRGGYGAFLMDNPELVGEMVSAVRANLNV-PVSVKIRIFVDLE 155 (358)
T ss_pred HHHHHHHHHhhhhc-CcccccCCCC--------HHHHhcCCccceeccCHHHHHHHHHHHHhhcCC-CeEEEEEecCcHH
Confidence 45688999999988 99999 6531 1122333 3333448999999999999985 4445555555544
Q ss_pred C
Q 036028 184 S 184 (193)
Q Consensus 184 ~ 184 (193)
.
T Consensus 156 k 156 (358)
T KOG2335|consen 156 K 156 (358)
T ss_pred H
Confidence 3
No 121
>PLN02361 alpha-amylase
Probab=59.38 E-value=1.2e+02 Score=27.35 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=21.7
Q ss_pred HHhHHHHHHHHHhcCCeEEEcc--cCC
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQL--WHV 61 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL--~h~ 61 (193)
.+.|++|++++|++|.++++-+ +|.
T Consensus 75 ~~el~~li~~~h~~gi~vi~D~V~NH~ 101 (401)
T PLN02361 75 EHLLKSLLRKMKQYNVRAMADIVINHR 101 (401)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEccccc
Confidence 4689999999999999999886 664
No 122
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=59.10 E-value=9 Score=32.05 Aligned_cols=20 Identities=10% Similarity=0.003 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhCCCeEEE-ec
Q 036028 111 FRLAARNAIEAGDSNSDF-SN 130 (193)
Q Consensus 111 f~~AA~~a~~AGfDgVEI-~a 130 (193)
+.++.+.+.++|||+||| ..
T Consensus 18 ~~e~l~~~~~~G~~~VEl~~~ 38 (279)
T TIGR00542 18 WLERLQLAKTCGFDFVEMSVD 38 (279)
T ss_pred HHHHHHHHHHcCCCEEEEecC
Confidence 456678889999999999 54
No 123
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=58.66 E-value=27 Score=31.14 Aligned_cols=58 Identities=9% Similarity=-0.008 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 110 DFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 110 ~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
.|++.+.++..+|.|+|=. .. |-+|-.+ ++|.|.+...+.++++.++.|. ...+.+.+
T Consensus 142 ~~a~~~~~~~~gGvD~IKdDe~---l~~~~~~-------p~~eRv~~v~~av~~a~~eTG~-~~~y~~Ni 200 (364)
T cd08210 142 ELAELAYAFALGGIDIIKDDHG---LADQPFA-------PFEERVKACQEAVAEANAETGG-RTLYAPNV 200 (364)
T ss_pred HHHHHHHHHHhcCCCeeecCcc---ccCccCC-------CHHHHHHHHHHHHHHHHhhcCC-cceEEEec
Confidence 3455556666789998844 22 3344443 4689999999999999999997 47777777
No 124
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=58.58 E-value=1.1e+02 Score=26.25 Aligned_cols=83 Identities=19% Similarity=0.204 Sum_probs=0.0
Q ss_pred hHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 036028 36 QVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAA 115 (193)
Q Consensus 36 ~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA 115 (193)
..+..+-+.++..+.++.+++|+... ....+..+.+-.++..+++.+
T Consensus 22 n~e~~~avi~AAe~~~sPvIi~~~~~---------------------------------~~~~~~~~~~~~~~~~~a~~~ 68 (276)
T cd00947 22 NLETLKAILEAAEETRSPVILQISEG---------------------------------AIKYAGLELLVAMVKAAAERA 68 (276)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcc---------------------------------hhhhCCHHHHHHHHHHHHHHC
Q ss_pred -----------------HHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHh
Q 036028 116 -----------------RNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQW 166 (193)
Q Consensus 116 -----------------~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~ 166 (193)
++|.++||+-|.| +.+= ++|.=.+..+|+++-.+..
T Consensus 69 ~VPV~lHLDH~~~~~~i~~ai~~GftSVMiD~S~l---------------~~eeNi~~t~~vv~~ah~~ 122 (276)
T cd00947 69 SVPVALHLDHGSSFELIKRAIRAGFSSVMIDGSHL---------------PFEENVAKTKEVVELAHAY 122 (276)
T ss_pred CCCEEEECCCCCCHHHHHHHHHhCCCEEEeCCCCC---------------CHHHHHHHHHHHHHHHHHc
No 125
>PRK01060 endonuclease IV; Provisional
Probab=56.81 E-value=10 Score=31.56 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhCCCeEEE-ec
Q 036028 111 FRLAARNAIEAGDSNSDF-SN 130 (193)
Q Consensus 111 f~~AA~~a~~AGfDgVEI-~a 130 (193)
+.++.+.+.++|||+||| ..
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~ 34 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG 34 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC
Confidence 456889999999999999 54
No 126
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=56.17 E-value=48 Score=28.84 Aligned_cols=52 Identities=10% Similarity=0.131 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEE
Q 036028 110 DFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFL 175 (193)
Q Consensus 110 ~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~ 175 (193)
.+.+.|+.+++.||..+-| .+.| | .+.+.+ .+--++.|++||+++|++ +.+.
T Consensus 123 ~~~~~a~~~~~~Gf~~~Kikvg~~--------~-~~~~~~----~~~d~~~v~avr~~~g~~-~~l~ 175 (341)
T cd03327 123 ELPDEAKEYLKEGYRGMKMRFGYG--------P-SDGHAG----LRKNVELVRAIREAVGYD-VDLM 175 (341)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCC--------C-CcchHH----HHHHHHHHHHHHHHhCCC-CcEE
Confidence 3556777788899999999 7544 1 111111 245688999999999973 4433
No 127
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=56.00 E-value=1.2e+02 Score=25.33 Aligned_cols=27 Identities=15% Similarity=-0.002 Sum_probs=20.4
Q ss_pred HHhHHhHHHHHHHHHhcCCeEEEcccC
Q 036028 34 KEQVEAWKPIVDAVHQKGGTFFCQLWH 60 (193)
Q Consensus 34 ~~~i~~~~~l~~~vh~~G~~i~~QL~h 60 (193)
++.++..++.++.+++.|..+.+++.+
T Consensus 110 ~~~~~~~~~~i~~a~~~G~~v~~~~~~ 136 (268)
T cd07940 110 EEVLERAVEAVEYAKSHGLDVEFSAED 136 (268)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEeeec
Confidence 456788889999999999877754433
No 128
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=54.90 E-value=12 Score=31.15 Aligned_cols=19 Identities=16% Similarity=-0.043 Sum_probs=15.4
Q ss_pred HHHHHHHHHhCCCeEEE-ec
Q 036028 112 RLAARNAIEAGDSNSDF-SN 130 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI-~a 130 (193)
.++...|.++|||+||| ..
T Consensus 19 ~e~~~~~~~~G~~~iEl~~~ 38 (284)
T PRK13210 19 EERLVFAKELGFDFVEMSVD 38 (284)
T ss_pred HHHHHHHHHcCCCeEEEecC
Confidence 45667888999999999 54
No 129
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=54.64 E-value=11 Score=31.36 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhCCCeEEE-ecc
Q 036028 110 DFRLAARNAIEAGDSNSDF-SNL 131 (193)
Q Consensus 110 ~f~~AA~~a~~AGfDgVEI-~ah 131 (193)
.+.++-+.|+++|||+||| ..+
T Consensus 11 ~l~~~l~~a~~~G~d~vEl~~~~ 33 (279)
T cd00019 11 GLENALKRAKEIGFDTVAMFLGN 33 (279)
T ss_pred cHHHHHHHHHHcCCCEEEEEcCC
Confidence 4567788999999999999 654
No 130
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=54.57 E-value=1.1e+02 Score=25.84 Aligned_cols=29 Identities=24% Similarity=0.491 Sum_probs=23.9
Q ss_pred HHhHHhHHHHHHHHHhcCCeEEEcccCCc
Q 036028 34 KEQVEAWKPIVDAVHQKGGTFFCQLWHVG 62 (193)
Q Consensus 34 ~~~i~~~~~l~~~vh~~G~~i~~QL~h~G 62 (193)
...++..+++++.++++|..+.+++.++.
T Consensus 105 ~~~~~~~~~~i~~ak~~G~~v~~~~~~a~ 133 (266)
T cd07944 105 KHEFDEALPLIKAIKEKGYEVFFNLMAIS 133 (266)
T ss_pred cccHHHHHHHHHHHHHCCCeEEEEEEeec
Confidence 45688899999999999998888887653
No 131
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=53.97 E-value=57 Score=28.58 Aligned_cols=64 Identities=13% Similarity=-0.056 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCC-CCCCCC--ChhhhhhHHHHHHHHHHHhcCCCCCcEE
Q 036028 110 DFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKS-DVEGRR--SYKQRKRLRQDRVERLHQWQEPPPPPFL 175 (193)
Q Consensus 110 ~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp-~~N~Rt--s~eNR~Rf~~Eii~aIR~~vg~~~~~~~ 175 (193)
+...-|+.+.++|.|||.+ .-.--.-+ +-.+ ..|.+. |-..-....++.+..+|+.++. +++|+
T Consensus 226 ~~~~ia~~l~~~Gadgi~~~nt~~~~~~-~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~-~ipIi 293 (344)
T PRK05286 226 ELDDIADLALEHGIDGVIATNTTLSRDG-LKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGG-RLPII 293 (344)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCcccccc-ccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCC-CCCEE
Confidence 3556778888999999999 53210000 1111 112222 2222224567789999998864 35544
No 132
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=53.76 E-value=62 Score=23.99 Aligned_cols=67 Identities=15% Similarity=0.101 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE--ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhc
Q 036028 98 PLRTEEIPQIVNDFRLAARNAIEAGDSNSDF--SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQ 167 (193)
Q Consensus 98 ~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI--~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~v 167 (193)
.++.+++..+++.|......+.+. ++|.-+ .+.+ ++.-|-.|.. ..++.++=+++.+++.+++++..
T Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~~-~~g~~~~~~gd~-~~~~f~~~~~-~~~~~~~A~~~a~~i~~~~~~~~ 86 (177)
T cd07302 18 RLGPEELVELLNEYFSAFDEIIER-HGGTVDKTIGDA-VMAVFGLPGA-HEDHAERAVRAALEMQEALAELN 86 (177)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHH-cCCEEEEEeCce-EEEEeCCCCC-chhHHHHHHHHHHHHHHHHHHHh
Confidence 457889999999999999988877 777777 4445 4455665543 11256667899999999998863
No 133
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=53.32 E-value=42 Score=29.45 Aligned_cols=49 Identities=16% Similarity=0.045 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 108 VNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 108 i~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
.+.++.+++...+.||+.+-| .+.+.. .--++.+++||+++|++ +.+++
T Consensus 144 ~e~~~~~~~~~~~~G~~~~Klk~g~~~~-------------------~~d~~~v~avRe~~g~~---~~l~i 193 (372)
T COG4948 144 EEMAAEAARALVELGFKALKLKVGVGDG-------------------DEDLERVRALREAVGDD---VRLMV 193 (372)
T ss_pred HHHHHHHHHHHHhcCCceEEecCCCCch-------------------HHHHHHHHHHHHHhCCC---ceEEE
Confidence 456788888888899999999 554311 15678999999999963 44554
No 134
>PRK08227 autoinducer 2 aldolase; Validated
Probab=51.84 E-value=55 Score=27.87 Aligned_cols=55 Identities=22% Similarity=0.221 Sum_probs=39.8
Q ss_pred HHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 036028 34 KEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRL 113 (193)
Q Consensus 34 ~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~ 113 (193)
.+++..+.++++.+|++|-.+++ +++ .| + .++ ++.+ ..+.
T Consensus 123 ~~~l~~l~~v~~ea~~~G~Plla--~~p----------rG-----~------------------~~~-~~~~----~ia~ 162 (264)
T PRK08227 123 HQSIKNIIQLVDAGLRYGMPVMA--VTA----------VG-----K------------------DMV-RDAR----YFSL 162 (264)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEE--Eec----------CC-----C------------------CcC-chHH----HHHH
Confidence 56788999999999999998876 321 00 0 011 1222 6689
Q ss_pred HHHHHHHhCCCeEEE
Q 036028 114 AARNAIEAGDSNSDF 128 (193)
Q Consensus 114 AA~~a~~AGfDgVEI 128 (193)
||+.|.+-|.|.|-+
T Consensus 163 aaRiaaELGADiVK~ 177 (264)
T PRK08227 163 ATRIAAEMGAQIIKT 177 (264)
T ss_pred HHHHHHHHcCCEEec
Confidence 999999999999999
No 135
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=51.57 E-value=75 Score=26.64 Aligned_cols=64 Identities=19% Similarity=0.119 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhCCCeEEE-ecc-hhhHHhhcCCC-CCCCC----ChhhhhhHHHHHHHHHHHhcCCCCCcEE
Q 036028 110 DFRLAARNAIEAGDSNSDF-SNL-NYMLIFSIKSD-VEGRR----SYKQRKRLRQDRVERLHQWQEPPPPPFL 175 (193)
Q Consensus 110 ~f~~AA~~a~~AGfDgVEI-~ah-GyLl~qFlSp~-~N~Rt----s~eNR~Rf~~Eii~aIR~~vg~~~~~~~ 175 (193)
+..+-|+.+.++|+|+|.+ +.. +..... -.+. ..++. |-..-....++.++.||+.++. +.+|.
T Consensus 177 ~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~-~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~-~ipii 247 (289)
T cd02810 177 DIVELAKAAERAGADGLTAINTISGRVVDL-KTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQL-DIPII 247 (289)
T ss_pred HHHHHHHHHHHcCCCEEEEEcccCccceec-ccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCC-CCCEE
Confidence 4556688889999999999 553 221110 0000 11111 1111123467889999998863 25554
No 136
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=51.45 E-value=91 Score=26.01 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=22.1
Q ss_pred HHhHHHHHHHHHhcCCeEEEcccCCccc
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQLWHVGRV 64 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL~h~G~~ 64 (193)
.++++++++..-+.|+.-++=+.+.|..
T Consensus 17 ~~~~~~~i~~l~~~Gv~gi~~~GstGE~ 44 (281)
T cd00408 17 LDALRRLVEFLIEAGVDGLVVLGTTGEA 44 (281)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCccc
Confidence 5689999999999998877766666654
No 137
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=51.31 E-value=8.1 Score=34.85 Aligned_cols=64 Identities=19% Similarity=0.176 Sum_probs=49.2
Q ss_pred ccccCC-ccEEEeCCceeCCCCCCCCCCccCCCH----HhHHhHHHHHHHHHhcCCeEEEcccCCccccCC
Q 036028 2 LKRTTN-GGFLIAEATGVFDTVQGYPNTPGIWTK----EQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTF 67 (193)
Q Consensus 2 ~~rA~G-~GlIi~~~~~V~~~~~~~~~~~~i~~~----~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~ 67 (193)
..+.-| .|+|.++++.|+|....+++...++.+ ..+.-|...++. +.+.+.+.|+.|+|+++..
T Consensus 66 ~~~g~g~~G~i~t~nv~vdp~~~~~~~~~~~~~e~~~~~~~ql~~~~~~~--~~~~~~~~~~~h~~~q~~~ 134 (400)
T KOG0134|consen 66 TKWGNGSFGYINTPNVWVDPQNEEWAGNVIAFHENDSFEFRQLWHLGAKL--QDGALAVQQLSHAGRQTPC 134 (400)
T ss_pred ccccCCCCceecCCceeecccccccCCceEEEecCCchHHHHHHHhhhhh--hhhhhhHHhccCCcccccc
Confidence 345555 699999999999999988887776654 445555555555 7888999999999999543
No 138
>PF02605 PsaL: Photosystem I reaction centre subunit XI; InterPro: IPR003757 The trimeric photosystem I of the cyanobacterium Synechococcus elongatus recomprises 11 protein subunits. Subunit XI, PsaL, from plants and bacteria is one of the smaller subunits with only two transmembrane alpha helices. PsaL interacts closely with PsaI [].; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009538 photosystem I reaction center; PDB: 2WSC_L 2WSF_L 2WSE_L 2O01_L 1JB0_L 3PCQ_L.
Probab=50.64 E-value=1.5 Score=34.16 Aligned_cols=20 Identities=5% Similarity=-0.065 Sum_probs=15.5
Q ss_pred eEEE-ecchhh-HHhh--cCCCCC
Q 036028 125 NSDF-SNLNYM-LIFS--IKSDVE 144 (193)
Q Consensus 125 gVEI-~ahGyL-l~qF--lSp~~N 144 (193)
|+|| .||||+ +.=| |-|+-|
T Consensus 45 GLEiGmAHGYfL~GPF~~lGPLRn 68 (153)
T PF02605_consen 45 GLEIGMAHGYFLVGPFVKLGPLRN 68 (153)
T ss_dssp HHHHHHHCCCCCTHHHHHCSTTTT
T ss_pred hhhhhhhceeeEechhhhcccCcC
Confidence 8999 999994 4666 467766
No 139
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=50.59 E-value=53 Score=29.19 Aligned_cols=61 Identities=11% Similarity=0.083 Sum_probs=41.5
Q ss_pred HHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHH
Q 036028 34 KEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTE-EIPQIVNDFR 112 (193)
Q Consensus 34 ~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~-eI~~ii~~f~ 112 (193)
.++++.+.++++.+|++|-.+++-..--|. .++.+ +++.-.+-.+
T Consensus 175 ~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~----------------------------------~i~~~~d~~~~~d~Ia 220 (348)
T PRK09250 175 RRQIEEISEAFEEAHELGLATVLWSYLRNS----------------------------------AFKKDGDYHTAADLTG 220 (348)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecccCc----------------------------------ccCCcccccccHHHHH
Confidence 467889999999999999987772111111 01111 1111235679
Q ss_pred HHHHHHHHhCCCeEEE
Q 036028 113 LAARNAIEAGDSNSDF 128 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI 128 (193)
.||+.|.+.|+|.|-+
T Consensus 221 ~AaRiaaELGADIVKv 236 (348)
T PRK09250 221 QANHLAATIGADIIKQ 236 (348)
T ss_pred HHHHHHHHHcCCEEEe
Confidence 9999999999999999
No 140
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=50.57 E-value=35 Score=28.53 Aligned_cols=61 Identities=8% Similarity=-0.007 Sum_probs=34.5
Q ss_pred HHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHh-cCCCCCcEEEEc
Q 036028 113 LAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQW-QEPPPPPFLFSL 178 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~-vg~~~~~~~~ri 178 (193)
++=.+|.+.|++.||| +-.|-= . -|..-+--.+.... -..+|+++||+- .-..++||++.+
T Consensus 33 e~y~~aL~~GcR~vElD~wdg~d-g---ePvV~Hg~tlts~i-~f~dv~~~I~~~AF~~S~yPvIlsl 95 (229)
T cd08627 33 EAYARCLRMGCRCIELDCWDGPD-G---MPVIYHGHTLTTKI-KFSDVLHTIKEHAFVTSEYPIILSI 95 (229)
T ss_pred HHHHHHHHhCCCEEEEEeecCCC-C---CEEEEeCCcCCCce-EHHHHHHHHHHhhccCCCCCEEEEE
Confidence 3445677899999999 754410 0 01100000222222 357999999983 322369999987
No 141
>PRK08185 hypothetical protein; Provisional
Probab=50.49 E-value=1.6e+02 Score=25.25 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=0.0
Q ss_pred hHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH---
Q 036028 36 QVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFR--- 112 (193)
Q Consensus 36 ~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~--- 112 (193)
..+..+-+.++..+.++++++|+.... .+-+..+ +-.++..++
T Consensus 22 n~e~~~avi~AAee~~sPvIl~~~~~~---------------------------------~~~~~~~-~~~~~~~~a~~~ 67 (283)
T PRK08185 22 DSCFLRAVVEEAEANNAPAIIAIHPNE---------------------------------LDFLGDN-FFAYVRERAKRS 67 (283)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCcch---------------------------------hhhccHH-HHHHHHHHHHHC
Q ss_pred --------------HHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHH
Q 036028 113 --------------LAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQ 165 (193)
Q Consensus 113 --------------~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~ 165 (193)
+..+.|.++||+.|.+ +.|- ++|...+..++|++-.+.
T Consensus 68 ~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~l---------------~~eeNi~~t~~vv~~a~~ 120 (283)
T PRK08185 68 PVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGSLL---------------PYEENVALTKEVVELAHK 120 (283)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCC---------------CHHHHHHHHHHHHHHHHH
No 142
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=50.45 E-value=35 Score=30.54 Aligned_cols=63 Identities=10% Similarity=0.046 Sum_probs=40.1
Q ss_pred HHHHHHHhCCCeEEE-ecc--hhhHHhhcCCCCCCCC-ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc-CcCC
Q 036028 114 AARNAIEAGDSNSDF-SNL--NYMLIFSIKSDVEGRR-SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL-PTEW 182 (193)
Q Consensus 114 AA~~a~~AGfDgVEI-~ah--GyLl~qFlSp~~N~Rt-s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri-~~e~ 182 (193)
=|+.|++||+..|=+ +=| ||- -|=|..++.-. +...+.-++.|+.+|+|+. | +.|++=. .-||
T Consensus 86 Wa~~~k~AGakY~vlTaKHHDGF~--lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~-G---lk~G~Y~S~~DW 153 (384)
T smart00812 86 WADLFKKAGAKYVVLTAKHHDGFC--LWDSKYSNWNAVDTGPKRDLVGELADAVRKR-G---LKFGLYHSLFDW 153 (384)
T ss_pred HHHHHHHcCCCeEEeeeeecCCcc--ccCCCCCCCcccCCCCCcchHHHHHHHHHHc-C---CeEEEEcCHHHh
Confidence 367889999999999 644 553 33343332222 2222558999999999997 3 4555533 3454
No 143
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=50.41 E-value=2.3e+02 Score=26.93 Aligned_cols=126 Identities=12% Similarity=0.013 Sum_probs=63.0
Q ss_pred HHhHHHHHHHHHhcCCeEEEcc--cCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHH
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQL--WHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSP-RPLRTEEIPQIVNDFRL 113 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL--~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~-~~mt~~eI~~ii~~f~~ 113 (193)
.+.+|+|++++|+.|.++++-+ +|.|.....-..-.+.+.+-... +... ....+..+ -.....+ +.+-+.+
T Consensus 205 ~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~-~~~~--~~~~w~~~~~~~~~~~---Vr~~l~~ 278 (613)
T TIGR01515 205 PDDFMYFVDACHQAGIGVILDWVPGHFPKDDHGLAEFDGTPLYEHKD-PRDG--EHWDWGTLIFDYGRPE---VRNFLVA 278 (613)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecccCcCCccchhhccCCCcceeccC-CccC--cCCCCCCceecCCCHH---HHHHHHH
Confidence 4689999999999999999987 57775432110001111000000 0000 00000001 0112233 3333445
Q ss_pred HHHHH-HHhCCCeEEE-ecchhhHHhh------cCCCCCCCCChhhhhhHHHHHHHHHHHhcC
Q 036028 114 AARNA-IEAGDSNSDF-SNLNYMLIFS------IKSDVEGRRSYKQRKRLRQDRVERLHQWQE 168 (193)
Q Consensus 114 AA~~a-~~AGfDgVEI-~ahGyLl~qF------lSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg 168 (193)
+++.- .+-|+||.=+ +.+.-+--+| ..|..+.......-..|+.++-+.||+..+
T Consensus 279 ~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p 341 (613)
T TIGR01515 279 NALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFP 341 (613)
T ss_pred HHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCC
Confidence 55555 4589999999 7643222111 122111111123357899999999998653
No 144
>KOG4654 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.39 E-value=9.1 Score=31.23 Aligned_cols=33 Identities=9% Similarity=0.011 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q 036028 96 PRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF 128 (193)
Q Consensus 96 ~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI 128 (193)
...+|.+|++++|+.=-++--.+++-||||||=
T Consensus 190 i~qlsadeV~eVikae~dsi~la~Qd~~d~~e~ 222 (252)
T KOG4654|consen 190 IPQLSADEVEEVIKAELDSIPLAKQDAFDGVEP 222 (252)
T ss_pred cccccHHHHHHHHHHhccccchhhhccccCCCc
Confidence 447899999999999999999999999999997
No 145
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=49.86 E-value=65 Score=26.64 Aligned_cols=49 Identities=10% Similarity=0.017 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC---ChhhhhhHH-----HHHHHHHHHhcC
Q 036028 108 VNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR---SYKQRKRLR-----QDRVERLHQWQE 168 (193)
Q Consensus 108 i~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt---s~eNR~Rf~-----~Eii~aIR~~vg 168 (193)
.+.|.+.++...++ +|.+|| - |.+|-.. .+++-..-. .+++++||+.+.
T Consensus 17 ~~~~~~~~~~l~~~-ad~iElgi-----------p~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~ 74 (244)
T PRK13125 17 VESFKEFIIGLVEL-VDILELGI-----------PPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVS 74 (244)
T ss_pred HHHHHHHHHHHHhh-CCEEEECC-----------CCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCC
Confidence 35566777777777 999999 4 3344443 222222222 489999998763
No 146
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=49.86 E-value=54 Score=28.28 Aligned_cols=61 Identities=10% Similarity=0.038 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEE
Q 036028 106 QIVNDFRLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFS 177 (193)
Q Consensus 106 ~ii~~f~~AA~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~r 177 (193)
..++.|-+.++.+.++| -||++|||. ++-+.. -|.+.-.+.+.+.+++|++.+|. .+.+.+
T Consensus 100 ~~~e~~P~~v~~i~~~G---HEIg~Hg~~-H~~~~~-----ls~~~e~~~i~~s~~~i~~~tG~--~P~G~~ 160 (297)
T TIGR03212 100 MALARNPEAVAAMKEAG---WEIASHGLR-WIDYQD-----MDEAQEREHIAEAIRLHTEVTGE--RPLGWY 160 (297)
T ss_pred HHHHHCHHHHHHHHHcC---CEEeecccc-Cccccc-----CCHHHHHHHHHHHHHHHHHHhCC--CCceEE
Confidence 45566667777777665 899999974 111110 05566667888888999998885 456555
No 147
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=49.77 E-value=1.2e+02 Score=26.91 Aligned_cols=72 Identities=10% Similarity=0.003 Sum_probs=53.6
Q ss_pred HHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Q 036028 45 DAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAARNAIEAGDS 124 (193)
Q Consensus 45 ~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA~~a~~AGfD 124 (193)
..+++++..+++.|-|+... .+ +.++.+++.-.+..++|.++||+
T Consensus 81 ~~A~~~~VPValHLDHg~~~---------------------------------~~--~~~~~~~~a~~~~~~~a~~~Gft 125 (345)
T cd00946 81 SMAEHYGVPVVLHTDHCAKK---------------------------------LL--PWFDGLLEADEEYFKQHGEPLFS 125 (345)
T ss_pred HHHHHCCCCEEEECCCCCCc---------------------------------cc--hhhHHHHHHHHHHHHHhccCCCc
Confidence 45567789999999986311 11 24566666666777789999999
Q ss_pred eEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHh
Q 036028 125 NSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQW 166 (193)
Q Consensus 125 gVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~ 166 (193)
-|.+ +.|- ++|.=.++.+||++..+..
T Consensus 126 SVMiDgS~l---------------p~eENI~~TkevVe~Ah~~ 153 (345)
T cd00946 126 SHMLDLSEE---------------PLEENIEICKKYLERMAKI 153 (345)
T ss_pred eEEeeCCCC---------------CHHHHHHHHHHHHHHHHHc
Confidence 9999 8742 7788889999999988653
No 148
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=49.62 E-value=92 Score=26.10 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=21.2
Q ss_pred HHhHHHHHHHHHhcCCeEEEcccCCccc
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQLWHVGRV 64 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL~h~G~~ 64 (193)
.++++++++.+-+.|+.-++=+.+.|..
T Consensus 20 ~~~~~~~i~~l~~~Gv~gl~v~GstGE~ 47 (284)
T cd00950 20 FDALERLIEFQIENGTDGLVVCGTTGES 47 (284)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCcch
Confidence 4688899999888998777656666644
No 149
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=49.50 E-value=48 Score=30.41 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhH-HhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcC
Q 036028 96 PRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYML-IFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQE 168 (193)
Q Consensus 96 ~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl-~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg 168 (193)
...|+.+|.-.|++.. .++||+-||+ ++.+|=. -.|+++. +.|.++.+|+.+.
T Consensus 20 ~~~~~t~dkl~ia~~L-------d~~Gv~~IE~~ggatf~~~~~f~~e~-------------p~e~l~~l~~~~~ 74 (448)
T PRK12331 20 ATRMTTEEMLPILEKL-------DNAGYHSLEMWGGATFDACLRFLNED-------------PWERLRKIRKAVK 74 (448)
T ss_pred CcccCHHHHHHHHHHH-------HHcCCCEEEecCCccchhhhccCCCC-------------HHHHHHHHHHhCC
Confidence 3468888887776554 4569999999 7766532 2788774 5667777777654
No 150
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=49.50 E-value=16 Score=30.30 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhCCCeEEE-ec
Q 036028 111 FRLAARNAIEAGDSNSDF-SN 130 (193)
Q Consensus 111 f~~AA~~a~~AGfDgVEI-~a 130 (193)
..++.+.++++|||+||| ..
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~ 35 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGG 35 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccC
Confidence 467788899999999999 64
No 151
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=49.17 E-value=1e+02 Score=26.02 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=22.4
Q ss_pred HHhHHHHHHHHHhc-CCeEEEcccCCccc
Q 036028 37 VEAWKPIVDAVHQK-GGTFFCQLWHVGRV 64 (193)
Q Consensus 37 i~~~~~l~~~vh~~-G~~i~~QL~h~G~~ 64 (193)
.++++++++.+-++ |+.-++=+.+.|..
T Consensus 20 ~~~~~~~i~~l~~~~Gv~gi~~~GstGE~ 48 (288)
T cd00954 20 EDVLRAIVDYLIEKQGVDGLYVNGSTGEG 48 (288)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECcCCcCc
Confidence 56899999999999 98877766676654
No 152
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=49.05 E-value=1.5e+02 Score=26.12 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred hHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHHHH
Q 036028 36 QVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLR---TEEIPQIVNDFR 112 (193)
Q Consensus 36 ~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt---~~eI~~ii~~f~ 112 (193)
..+..+-+.+++.+.++.+++|+... ..+-+. ...+-..+..++
T Consensus 33 n~e~~~avi~AAee~~sPvIlq~s~~---------------------------------~~~~~g~~~~~~~~~~~~~~a 79 (321)
T PRK07084 33 NMEQLQAIIQACVETKSPVILQVSKG---------------------------------ARKYANATLLRYMAQGAVEYA 79 (321)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEechh---------------------------------HHhhCCchHHHHHHHHHHHHH
Q ss_pred HHH-------------------HHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHH
Q 036028 113 LAA-------------------RNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQ 165 (193)
Q Consensus 113 ~AA-------------------~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~ 165 (193)
+.+ ++|.++||+-|.+ +.|= ++|.-.+..+|+++..+.
T Consensus 80 ~~a~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD~S~l---------------p~eeNI~~T~evv~~Ah~ 137 (321)
T PRK07084 80 KELGCPIPIVLHLDHGDSFELCKDCIDSGFSSVMIDGSHL---------------PYEENVALTKKVVEYAHQ 137 (321)
T ss_pred HHcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEeeCCCC---------------CHHHHHHHHHHHHHHHHH
No 153
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=48.77 E-value=64 Score=28.35 Aligned_cols=44 Identities=2% Similarity=-0.118 Sum_probs=30.8
Q ss_pred HHHHHHHHhCC--CeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEE
Q 036028 113 LAARNAIEAGD--SNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFS 177 (193)
Q Consensus 113 ~AA~~a~~AGf--DgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~r 177 (193)
+-+....+||. |.|.| ++||+. ..+.|+|+.||+..+. .+|..+
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~gh~-------------------~~~~e~I~~ir~~~p~--~~vi~g 146 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHGHS-------------------DSVINMIQHIKKHLPE--TFVIAG 146 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCch-------------------HHHHHHHHHHHhhCCC--CeEEEE
Confidence 44555677865 99999 999753 2567778888887752 556664
No 154
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=48.43 E-value=1.2e+02 Score=25.95 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=21.5
Q ss_pred HHhHHHHHHHHHhcCCeEEEcccCCccc
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQLWHVGRV 64 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL~h~G~~ 64 (193)
.++++++++..-++|+.-++=+...|-.
T Consensus 27 ~~~l~~li~~l~~~Gv~Gi~~~GstGE~ 54 (303)
T PRK03620 27 EAAYREHLEWLAPYGAAALFAAGGTGEF 54 (303)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCCcCc
Confidence 5689999999999998777655555543
No 155
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=47.74 E-value=1.1e+02 Score=26.03 Aligned_cols=27 Identities=11% Similarity=-0.009 Sum_probs=21.2
Q ss_pred HHhHHHHHHHHHh-cCCeEEEcccCCcc
Q 036028 37 VEAWKPIVDAVHQ-KGGTFFCQLWHVGR 63 (193)
Q Consensus 37 i~~~~~l~~~vh~-~G~~i~~QL~h~G~ 63 (193)
.++++++++.+-+ .|+.-++=+.+.|-
T Consensus 23 ~~~~~~li~~l~~~~Gv~gi~v~GstGE 50 (293)
T PRK04147 23 EQGLRRLVRFNIEKQGIDGLYVGGSTGE 50 (293)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCccc
Confidence 5799999999998 99876665666654
No 156
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=47.65 E-value=48 Score=30.82 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhCCCeEEE-ecchh
Q 036028 111 FRLAARNAIEAGDSNSDF-SNLNY 133 (193)
Q Consensus 111 f~~AA~~a~~AGfDgVEI-~ahGy 133 (193)
+..-|+.+.+||.|.|+| .+||+
T Consensus 243 ~~~ra~~Lv~aGvd~i~vd~a~g~ 266 (502)
T PRK07107 243 YAERVPALVEAGADVLCIDSSEGY 266 (502)
T ss_pred HHHHHHHHHHhCCCeEeecCcccc
Confidence 445566688899999999 99995
No 157
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=47.58 E-value=46 Score=28.95 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=17.4
Q ss_pred HHHHHHHHHhCCCeEEE-ecch
Q 036028 112 RLAARNAIEAGDSNSDF-SNLN 132 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI-~ahG 132 (193)
.+.|+.+.++|.|+|.+ +..|
T Consensus 192 ~~~a~~l~~~Gvd~I~vsG~GG 213 (326)
T cd02811 192 RETAKRLADAGVKAIDVAGAGG 213 (326)
T ss_pred HHHHHHHHHcCCCEEEECCCCC
Confidence 47789999999999999 6434
No 158
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=47.55 E-value=59 Score=28.34 Aligned_cols=45 Identities=11% Similarity=-0.050 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEE
Q 036028 111 FRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLF 176 (193)
Q Consensus 111 f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ 176 (193)
+.+-+..+.++|.|.|+| .+||.- ..+.+.++.||+..+ +.+|.+
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G~~-------------------~~~~~~i~~ik~~~p--~v~Vi~ 140 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHGHS-------------------VYVIEMIKFIKKKYP--NVDVIA 140 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCc-------------------HHHHHHHHHHHHHCC--CceEEE
Confidence 455666778899999999 988621 245677777777653 244544
No 159
>PF01085 HH_signal: Hedgehog amino-terminal signalling domain; InterPro: IPR000320 This domain identifies a group of sequences which belong to the MEROPS peptidase family C46 (clan CH). The type example is the hedgehog protein from Drosophila melanogaster (Fruit fly) which self-processes by a one-time cysteine dependent self cleavage. Hedgehog is a family of secreted signal molecules required for embryonic cell differentiation. members of this family are composed of two domains. These proteins are autocatalytically cleaved by the C-terminal domain IPR001767 from INTERPRO. This family is the N-terminal domain that is responsible for both local and long-range signalling activities. The structure of this domain is known [] and reveals a tetrahedrally coordinated zinc ion that appears to be structurally analogous to the zinc coordination sites of zinc hydrolases, such as thermolysin and carboxypeptidase A. This putative catalytic site represents a distinct activity from the autoprocessing activity that resides in the carboxy-terminal domain.; GO: 0007267 cell-cell signaling, 0007275 multicellular organismal development; PDB: 2WFR_A 3N1Q_B 3N1G_B 2WFQ_A 2WG3_A 3MXW_A 3M1N_B 3HO5_H 3K7H_B 3N1O_B ....
Probab=47.53 E-value=19 Score=28.40 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEE
Q 036028 108 VNDFRLAARNAIEAGDSNSDF 128 (193)
Q Consensus 108 i~~f~~AA~~a~~AGfDgVEI 128 (193)
...|..-|+.|.+||||-|.-
T Consensus 131 ~~k~g~LarLAv~AGFDwV~Y 151 (160)
T PF01085_consen 131 RSKYGMLARLAVEAGFDWVYY 151 (160)
T ss_dssp GGGHHHHHHHHHHTT-SEEEE
T ss_pred chhhHHHHHHHhhcccCeEEe
Confidence 447899999999999999976
No 160
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=47.30 E-value=1.4e+02 Score=25.09 Aligned_cols=87 Identities=11% Similarity=0.039 Sum_probs=47.0
Q ss_pred HHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 036028 34 KEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRL 113 (193)
Q Consensus 34 ~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~ 113 (193)
-.+.+.++.+++..+..|..+.+-+--- ...... ...++.-.+-.. .|.-.....+-..++.+...+.++.
T Consensus 107 ~~~~~~l~~~v~~L~~~GirVSLFiD~d-~~qi~a-----a~~~gA~~IELh---TG~Ya~~~~~~~~~~~~~el~rl~~ 177 (243)
T COG0854 107 AGQLDKLRDAVRRLKNAGIRVSLFIDPD-PEQIEA-----AAEVGAPRIELH---TGPYADAHDAAEQARADAELERLAK 177 (243)
T ss_pred hhhhhhHHHHHHHHHhCCCeEEEEeCCC-HHHHHH-----HHHhCCCEEEEe---cccccccCChHHHHHHHHHHHHHHH
Confidence 3567889999999999999887755311 000000 000000000000 1100001122233455568888888
Q ss_pred HHHHHHHhCCCeEEE-ecch
Q 036028 114 AARNAIEAGDSNSDF-SNLN 132 (193)
Q Consensus 114 AA~~a~~AGfDgVEI-~ahG 132 (193)
+|+.|.+.| ..+ ++||
T Consensus 178 ~a~~A~~lG---L~VnAGHg 194 (243)
T COG0854 178 AAKLAAELG---LKVNAGHG 194 (243)
T ss_pred HHHHHHHcC---ceEecCCC
Confidence 888888875 678 9998
No 161
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=47.12 E-value=1.8e+02 Score=24.89 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=0.0
Q ss_pred hHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHH
Q 036028 36 QVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLR-TEEIPQIVNDFRLA 114 (193)
Q Consensus 36 ~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt-~~eI~~ii~~f~~A 114 (193)
..+..+-+.++..+.++++++|+.... ..-+. .+.+-..+..+++.
T Consensus 25 n~e~~~avi~aAe~~~~PvIl~~~~~~---------------------------------~~~~~~~~~~~~~~~~~a~~ 71 (282)
T TIGR01859 25 NLEWTQAILEAAEEENSPVIIQVSEGA---------------------------------IKYMGGYKMAVAMVKTLIER 71 (282)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcch---------------------------------hhccCcHHHHHHHHHHHHHH
Q ss_pred HH------------------HHHHhCCCeEEEecchhhHHhhcCCCCCCCC---ChhhhhhHHHHHHHHHHH
Q 036028 115 AR------------------NAIEAGDSNSDFSNLNYMLIFSIKSDVEGRR---SYKQRKRLRQDRVERLHQ 165 (193)
Q Consensus 115 A~------------------~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rt---s~eNR~Rf~~Eii~aIR~ 165 (193)
+. +|.++||+.|+| |. +++.-.+...++++-.+.
T Consensus 72 ~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmi-----------------d~s~l~~~eni~~t~~v~~~a~~ 126 (282)
T TIGR01859 72 MSIVPVALHLDHGSSYESCIKAIKAGFSSVMI-----------------DGSHLPFEENLALTKKVVEIAHA 126 (282)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHcCCCEEEE-----------------CCCCCCHHHHHHHHHHHHHHHHH
No 162
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=47.08 E-value=62 Score=29.77 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=24.4
Q ss_pred HHHHHHHHHH------------HHHHHHHHHhCCCeEEE-ec
Q 036028 102 EEIPQIVNDF------------RLAARNAIEAGDSNSDF-SN 130 (193)
Q Consensus 102 ~eI~~ii~~f------------~~AA~~a~~AGfDgVEI-~a 130 (193)
+.|+.+.+.| .+.|+.+.+||+|+|-+ .+
T Consensus 258 ~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g 299 (486)
T PRK05567 258 DRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIG 299 (486)
T ss_pred HHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCC
Confidence 4677788887 78899999999999998 54
No 163
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=47.07 E-value=1.1e+02 Score=25.64 Aligned_cols=48 Identities=15% Similarity=0.030 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCeEEEecchhhHHhhcCCCCCCCC-ChhhhhhHHHHHHHHHHHhc
Q 036028 112 RLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRR-SYKQRKRLRQDRVERLHQWQ 167 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rt-s~eNR~Rf~~Eii~aIR~~v 167 (193)
.+-|....++|+|.|+||+.+ ..-+-.. +.+.=++-+..+|+++++.+
T Consensus 27 ~~~a~~~~~~GAdiIDIG~~s--------t~p~~~~i~~~~E~~rl~~~v~~i~~~~ 75 (257)
T cd00739 27 VAHAEKMIAEGADIIDIGGES--------TRPGADPVSVEEELERVIPVLEALRGEL 75 (257)
T ss_pred HHHHHHHHHCCCCEEEECCCc--------CCCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 344667788999999994322 1112233 66666777888888888765
No 164
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=46.90 E-value=1.2e+02 Score=25.85 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=28.0
Q ss_pred CCCCCCHHHHHHHHHHH--------------HHHHHHHHHhCCCeEEE-ec
Q 036028 95 SPRPLRTEEIPQIVNDF--------------RLAARNAIEAGDSNSDF-SN 130 (193)
Q Consensus 95 ~~~~mt~~eI~~ii~~f--------------~~AA~~a~~AGfDgVEI-~a 130 (193)
..++++.+-|.++.+.. ++.|..+..||+|+|+| .+
T Consensus 233 a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta 283 (299)
T cd02940 233 AVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTA 283 (299)
T ss_pred CcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEcee
Confidence 44567788888887777 56677777899999999 55
No 165
>PLN02849 beta-glucosidase
Probab=46.56 E-value=44 Score=31.06 Aligned_cols=82 Identities=13% Similarity=0.168 Sum_probs=56.4
Q ss_pred CCHHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 036028 32 WTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDF 111 (193)
Q Consensus 32 ~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f 111 (193)
.+++-++.++++++.++++|...++=|.|-- .|.. +... ..| +.. +++++.|
T Consensus 113 vN~~gl~fY~~lid~l~~~GI~P~VTL~H~d---lP~~------------L~~~--yGG--W~n---------r~~v~~F 164 (503)
T PLN02849 113 VNPKGLQFYKNFIQELVKHGIEPHVTLFHYD---HPQY------------LEDD--YGG--WIN---------RRIIKDF 164 (503)
T ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEeecCCC---CcHH------------HHHh--cCC--cCC---------chHHHHH
Confidence 5899999999999999999999999999952 1111 0000 011 111 3689999
Q ss_pred HHHHHHHHHhCCCeE-------EE---ecchhhHHhhcCCC
Q 036028 112 RLAARNAIEAGDSNS-------DF---SNLNYMLIFSIKSD 142 (193)
Q Consensus 112 ~~AA~~a~~AGfDgV-------EI---~ahGyLl~qFlSp~ 142 (193)
++=|+.+.+.=-|-| |. +..||+...+ .|.
T Consensus 165 ~~YA~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~-~Pg 204 (503)
T PLN02849 165 TAYADVCFREFGNHVKFWTTINEANIFTIGGYNDGIT-PPG 204 (503)
T ss_pred HHHHHHHHHHhcCcCCEEEEecchhhhhhchhhhccC-CCC
Confidence 999999988766766 43 3347776554 454
No 166
>PRK06852 aldolase; Validated
Probab=46.53 E-value=87 Score=27.28 Aligned_cols=58 Identities=16% Similarity=0.079 Sum_probs=39.8
Q ss_pred HHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 036028 34 KEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRL 113 (193)
Q Consensus 34 ~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~ 113 (193)
.+++..+.++++.+|++|-.+++-..--|... ..+- + .+..+.
T Consensus 150 ~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i------------------------------~~~~---~----~~~ia~ 192 (304)
T PRK06852 150 SEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAV------------------------------KDEK---D----PHLIAG 192 (304)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeeccCccc------------------------------CCCc---c----HHHHHH
Confidence 56788999999999999998777221111110 0000 1 235688
Q ss_pred HHHHHHHhCCCeEEE
Q 036028 114 AARNAIEAGDSNSDF 128 (193)
Q Consensus 114 AA~~a~~AGfDgVEI 128 (193)
||+.|.+.|+|.|-+
T Consensus 193 aaRiaaELGADIVKv 207 (304)
T PRK06852 193 AAGVAACLGADFVKV 207 (304)
T ss_pred HHHHHHHHcCCEEEe
Confidence 999999999999999
No 167
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=46.40 E-value=75 Score=26.36 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 110 DFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 110 ~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
.+.+.|+.+++.||..+-| .+.. | .--+++|++||+.+|++ + .+++
T Consensus 88 ~~~~~~~~~~~~G~~~~KiKvg~~--------~------------~~d~~~v~~vr~~~g~~-~--~l~v 134 (265)
T cd03315 88 EVAEEARRALEAGFRTFKLKVGRD--------P------------ARDVAVVAALREAVGDD-A--ELRV 134 (265)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCC--------H------------HHHHHHHHHHHHhcCCC-C--EEEE
Confidence 4566778888899999999 6411 0 24468999999999873 4 4455
No 168
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=46.19 E-value=57 Score=28.75 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCCeEEEccc
Q 036028 41 KPIVDAVHQKGGTFFCQLW 59 (193)
Q Consensus 41 ~~l~~~vh~~G~~i~~QL~ 59 (193)
..+++++|++|.+++..+.
T Consensus 49 ~~~idaAHknGV~Vlgti~ 67 (339)
T cd06547 49 ADWINAAHRNGVPVLGTFI 67 (339)
T ss_pred cHHHHHHHhcCCeEEEEEE
Confidence 5678899999999999774
No 169
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=46.11 E-value=1.2e+02 Score=25.61 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=20.9
Q ss_pred HHhHHHHHHHHHhcCCeEEEcccCCccc
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQLWHVGRV 64 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL~h~G~~ 64 (193)
.++++++++.+-+.|..-++=+.+.|..
T Consensus 21 ~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~ 48 (292)
T PRK03170 21 FAALRKLVDYLIANGTDGLVVVGTTGES 48 (292)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCCcc
Confidence 5789999999999998765545555543
No 170
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=45.95 E-value=63 Score=26.41 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEE
Q 036028 109 NDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLF 176 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ 176 (193)
++...-|+.+.++|.|+|+| +..|. + -.=+.+++++||+.+ +.|+.+
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~gv---------t---------~~~~~~~v~~ik~~~---~lPvil 58 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSLGI---------V---------ESNLDQTVKKIKKIT---NLPVIL 58 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCC---------C---------HHHHHHHHHHHHhhc---CCCEEE
Confidence 44455778889999999999 55332 1 124667889999965 356665
No 171
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=45.90 E-value=9 Score=29.73 Aligned_cols=20 Identities=20% Similarity=0.092 Sum_probs=15.9
Q ss_pred HHHHHhCCCeEEE-ecchhhH
Q 036028 116 RNAIEAGDSNSDF-SNLNYML 135 (193)
Q Consensus 116 ~~a~~AGfDgVEI-~ahGyLl 135 (193)
+.|+++|||+||+ ..+.+..
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~ 22 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPW 22 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHH
T ss_pred hHHHHcCCCEEEEecCCCccc
Confidence 4689999999999 7766544
No 172
>PLN02814 beta-glucosidase
Probab=45.55 E-value=47 Score=30.89 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=48.2
Q ss_pred CCHHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 036028 32 WTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDF 111 (193)
Q Consensus 32 ~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f 111 (193)
.+++-++.+++|++.+.++|.+.++=|.|-- .|.. .... ..| +.. +++++.|
T Consensus 111 ~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~d---lP~~------------L~~~--yGG--W~n---------~~~i~~F 162 (504)
T PLN02814 111 INPKGLLFYKNLIKELRSHGIEPHVTLYHYD---LPQS------------LEDE--YGG--WIN---------RKIIEDF 162 (504)
T ss_pred CCHHHHHHHHHHHHHHHHcCCceEEEecCCC---CCHH------------HHHh--cCC--cCC---------hhHHHHH
Confidence 5899999999999999999999999999952 1111 0000 011 111 3689999
Q ss_pred HHHHHHHHHhCCCeE
Q 036028 112 RLAARNAIEAGDSNS 126 (193)
Q Consensus 112 ~~AA~~a~~AGfDgV 126 (193)
++=|+.+.+.==|-|
T Consensus 163 ~~YA~~~f~~fgdrV 177 (504)
T PLN02814 163 TAFADVCFREFGEDV 177 (504)
T ss_pred HHHHHHHHHHhCCcC
Confidence 999999988666666
No 173
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=45.41 E-value=1.7e+02 Score=23.96 Aligned_cols=101 Identities=12% Similarity=0.128 Sum_probs=54.7
Q ss_pred HHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAAR 116 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA~ 116 (193)
.+..+.....+|+.|.|+++-+.-.. . +. + .....+.+. .+.|+++..
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~--~-------~~---------------~----~~~~~~~~~----~~~fa~~l~ 97 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNH--L-------GA---------------G----FANNLSDAA----AKAYAKAIV 97 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCC--C-------CC---------------C----ccccCCHHH----HHHHHHHHH
Confidence 35667788888999999998763110 0 00 0 001123333 355555555
Q ss_pred HH-HHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 117 NA-IEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 117 ~a-~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
.. .+-|||||.| --+..-. -.+ + ...++- -...+++++|+..|+.++.+.+-.
T Consensus 98 ~~v~~yglDGiDiD~E~~~~~---~~~--~---~~~~~~-~~~~lv~~Lr~~~~~~~kllt~~~ 152 (255)
T cd06542 98 DTVDKYGLDGVDFDDEYSGYG---KNG--T---SQPSNE-AFVRLIKELRKYMGPTDKLLTIDG 152 (255)
T ss_pred HHHHHhCCCceEEeeeecccC---CCC--C---CcchHH-HHHHHHHHHHHHhCcCCcEEEEEe
Confidence 44 5689999999 5443210 000 0 112233 345778889998876335555443
No 174
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=45.24 E-value=61 Score=28.19 Aligned_cols=75 Identities=7% Similarity=-0.156 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHH-HHhCCCeEEEecchhhHHhhc---------------CCCCCCCC-------ChhhhhhHHHHH
Q 036028 103 EIPQIVNDFRLAARNA-IEAGDSNSDFSNLNYMLIFSI---------------KSDVEGRR-------SYKQRKRLRQDR 159 (193)
Q Consensus 103 eI~~ii~~f~~AA~~a-~~AGfDgVEI~ahGyLl~qFl---------------Sp~~N~Rt-------s~eNR~Rf~~Ei 159 (193)
|...--+..+++.... ++.|+|++=|....+...+-| .|..+.-. +...|+.+.+|.
T Consensus 47 e~~~~~e~~ae~~~~~~~~~g~D~~~i~~d~~~~~ea~G~~i~~~~~~~P~~~~~i~~~~d~~~l~~~~~~~~~~~~lea 126 (346)
T PRK00115 47 ELCKNPELAAEVTLQPVRRYGVDAAILFSDILTPPDAMGLDLDFEEGEGPVFDNPIRTEADVEKLPVPDPEEDLPYVLEA 126 (346)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCeEEecccchhhHHHcCCeeeeCCCCCCcCCCCcCCHHHHHhcCCCCchhccHHHHHH
Confidence 3333345566665555 559999999943445555544 22211111 335689999999
Q ss_pred HHHHHHhcCCCCCcEEEEc
Q 036028 160 VERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 160 i~aIR~~vg~~~~~~~~ri 178 (193)
++.+|+++|++ .++.--+
T Consensus 127 i~~l~~~~~~~-~~vig~v 144 (346)
T PRK00115 127 VRLLRRELGGE-VPLIGFA 144 (346)
T ss_pred HHHHHHHhCCC-ceEEeeC
Confidence 99999999873 5555443
No 175
>PRK14705 glycogen branching enzyme; Provisional
Probab=45.21 E-value=3.4e+02 Score=28.37 Aligned_cols=120 Identities=13% Similarity=0.042 Sum_probs=62.6
Q ss_pred HHhHHHHHHHHHhcCCeEEEcc--cCCccccCC--CCCCCCCCccc---cCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQL--WHVGRVSTF--GLQPNGKAPIS---STNKGVTPGLDGQDWSSPRPLRTEEIPQIVN 109 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL--~h~G~~~~~--~~~~~~~~~~~---pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~ 109 (193)
.+.+|++++++|+.|..+++-+ +|.+..... .+ ++...+- |....... .| ...-.....++ .+
T Consensus 814 ~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~f--dg~~~y~~~d~~~g~~~~--Wg---~~~fn~~~~eV---r~ 883 (1224)
T PRK14705 814 PDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQF--DGQPLYEHADPALGEHPD--WG---TLIFDFGRTEV---RN 883 (1224)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccccCCcchhhhhhc--CCCcccccCCcccCCCCC--CC---CceecCCCHHH---HH
Confidence 5789999999999999999987 455443211 11 1110000 00000000 00 00111223333 33
Q ss_pred HHHHHHHHH-HHhCCCeEEE-ecchhhHHh-------hcCCCCCCCCChhhhhhHHHHHHHHHHHhc
Q 036028 110 DFRLAARNA-IEAGDSNSDF-SNLNYMLIF-------SIKSDVEGRRSYKQRKRLRQDRVERLHQWQ 167 (193)
Q Consensus 110 ~f~~AA~~a-~~AGfDgVEI-~ahGyLl~q-------FlSp~~N~Rts~eNR~Rf~~Eii~aIR~~v 167 (193)
-+.++|+.= .+-++||.=+ +.+..|--. .....+.-|.++ .-..|+.++-+.|++..
T Consensus 884 fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~-~ai~fl~~ln~~v~~~~ 949 (1224)
T PRK14705 884 FLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENL-EAISFLQEVNATVYKTH 949 (1224)
T ss_pred HHHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccCh-HHHHHHHHHHHHHHHHC
Confidence 333444444 5689999999 876654221 111111112232 36889999999999864
No 176
>PLN02784 alpha-amylase
Probab=44.75 E-value=2.1e+02 Score=28.84 Aligned_cols=96 Identities=10% Similarity=0.085 Sum_probs=49.8
Q ss_pred HHhHHHHHHHHHhcCCeEEEcc--cCCcccc--C-CCCCC-CCCCccccCCCCCC----CC----CCCCCCCCCCC--CC
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQL--WHVGRVS--T-FGLQP-NGKAPISSTNKGVT----PG----LDGQDWSSPRP--LR 100 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL--~h~G~~~--~-~~~~~-~~~~~~~pS~~~~~----~~----~~g~~~~~~~~--mt 100 (193)
.+.|+.|++++|++|.++++-+ +|.+... . ..+.. .+...+.+..+... .. ..+..+..... .+
T Consensus 567 ~~ELk~LI~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDLDh~ 646 (894)
T PLN02784 567 IDELKDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHS 646 (894)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcccccccccCCCCcccccCCeecCCCCcccCCCcccCCcCCcCcccccCcCCcCCCC
Confidence 5689999999999999999885 6754211 0 00000 00001111110000 00 01100111112 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhh
Q 036028 101 TEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYM 134 (193)
Q Consensus 101 ~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyL 134 (193)
..++++.+.+|.. ....+.||||.=+ ++.||-
T Consensus 647 npeVR~eL~~Wlk--WL~~e~G~DGfRLDaVKgf~ 679 (894)
T PLN02784 647 QDFVRKDLKEWLC--WMRKEVGYDGWRLDFVRGFW 679 (894)
T ss_pred CHHHHHHHHHHHH--HHHhccCCCEEEEeccCCCC
Confidence 4667766666653 3345799999999 998873
No 177
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=44.47 E-value=92 Score=26.89 Aligned_cols=54 Identities=6% Similarity=0.047 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEecchhhHHhhcCCCCCCCCChhh-hhhHHHHHHHHHHHhcC
Q 036028 107 IVNDFRLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRRSYKQ-RKRLRQDRVERLHQWQE 168 (193)
Q Consensus 107 ii~~f~~AA~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rts~eN-R~Rf~~Eii~aIR~~vg 168 (193)
+.+...+-++...++|.|+|.|+-. ...+|||.. ++. =.-+..+|+++|++..|
T Consensus 178 ~t~~~~~~~~~~~eaGad~i~i~d~---~~~~lsp~~-----f~ef~~p~~k~i~~~i~~~~~ 232 (338)
T TIGR01464 178 LTDATIEYLVEQVKAGAQAVQIFDS---WAGALSPED-----FEEFVLPYLKKIIEEVKARLP 232 (338)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECC---ccccCCHHH-----HHHHHHHHHHHHHHHHHHhCC
Confidence 3333456666667899999998211 123454421 110 02356789999988644
No 178
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=44.22 E-value=1e+02 Score=26.91 Aligned_cols=65 Identities=20% Similarity=0.072 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhCCCeEEE-ecch----hhHHhhcCCC-CCCCC--ChhhhhhHHHHHHHHHHHhcCCCCCcE
Q 036028 108 VNDFRLAARNAIEAGDSNSDF-SNLN----YMLIFSIKSD-VEGRR--SYKQRKRLRQDRVERLHQWQEPPPPPF 174 (193)
Q Consensus 108 i~~f~~AA~~a~~AGfDgVEI-~ahG----yLl~qFlSp~-~N~Rt--s~eNR~Rf~~Eii~aIR~~vg~~~~~~ 174 (193)
++++.+.|+.|.++|+|||=+ -=-. -++.+. .|. .|.-- |=.-=....+++|..+++.++++ ++|
T Consensus 172 ~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~-~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~-ipI 244 (310)
T COG0167 172 ITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETK-KPVLANETGGLSGPPLKPIALRVVAELYKRLGGD-IPI 244 (310)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeecccccccccccc-ccccCcCCCCcCcccchHHHHHHHHHHHHhcCCC-CcE
Confidence 467788899999999999987 3111 122222 111 11111 22222467899999999999874 443
No 179
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=44.12 E-value=99 Score=24.98 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=34.2
Q ss_pred HHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC-ChhhhhhHHHHHHHHHHHhcCCCCCcEEE
Q 036028 114 AARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR-SYKQRKRLRQDRVERLHQWQEPPPPPFLF 176 (193)
Q Consensus 114 AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt-s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ 176 (193)
.|....++|+|.|+| +.-- .| |... +.+-=++.+.++|+++++... +.+|.+
T Consensus 24 ~a~~~~~~GAdiIDIg~~st-------~p--~~~~v~~~eE~~rl~~~l~~i~~~~~--~~plSI 77 (210)
T PF00809_consen 24 RAREQVEAGADIIDIGAEST-------RP--GATPVSEEEEMERLVPVLQAIREENP--DVPLSI 77 (210)
T ss_dssp HHHHHHHTT-SEEEEESSTS-------ST--TSSSSHHHHHHHHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHhcCCEEEeccccc-------CC--CCCcCCHHHHHHHHHHHHHHHhccCC--CeEEEE
Confidence 399999999999999 5421 11 1111 667778889999999998322 245544
No 180
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=43.68 E-value=75 Score=27.77 Aligned_cols=69 Identities=14% Similarity=0.165 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc-Cc
Q 036028 103 EIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL-PT 180 (193)
Q Consensus 103 eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri-~~ 180 (193)
..+++++.|.+...-..+-|.|++-| -. .+. . -++-++..++.+-++.|. ..||.+.. .+
T Consensus 137 ~fd~l~~ay~eq~~~Li~gG~D~iLiET~--------~D~--------l-~~KaA~~a~~~~~~~~~~-~LPv~~s~Ti~ 198 (311)
T COG0646 137 TFDELVEAYREQVEGLIDGGADLILIETI--------FDT--------L-NAKAAVFAAREVFEELGV-RLPVMISGTIT 198 (311)
T ss_pred cHHHHHHHHHHHHHHHHhCCCcEEEEehh--------ccH--------H-HHHHHHHHHHHHHHhcCC-cccEEEEEEEe
Confidence 46789999999999999999999977 43 222 1 134445555555555666 48888887 55
Q ss_pred CCCCCcccccc
Q 036028 181 EWDSSISLTGS 191 (193)
Q Consensus 181 e~~~~~~~~~~ 191 (193)
+ .+.++.|+
T Consensus 199 ~--sG~tl~Gq 207 (311)
T COG0646 199 D--SGRTLSGQ 207 (311)
T ss_pred c--CceecCCC
Confidence 5 66666664
No 181
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=43.56 E-value=1.4e+02 Score=25.23 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=20.9
Q ss_pred HHhHHHHHHHHHhcCCeEEEcccCCccc
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQLWHVGRV 64 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL~h~G~~ 64 (193)
.++++++++.+-+.|+.=++=+.+.|..
T Consensus 18 ~~~~~~~i~~l~~~Gv~Gi~~~GstGE~ 45 (285)
T TIGR00674 18 FAALEKLIDFQIENGTDAIVVVGTTGES 45 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCccc
Confidence 5689999999888998766655555543
No 182
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=43.48 E-value=77 Score=23.94 Aligned_cols=57 Identities=14% Similarity=0.039 Sum_probs=39.2
Q ss_pred HHHHHHHHhCCCeEEE-ec--chhhHHhhcCCCCCCCC-ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 113 LAARNAIEAGDSNSDF-SN--LNYMLIFSIKSDVEGRR-SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI-~a--hGyLl~qFlSp~~N~Rt-s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
+-+..++++|.|.|-| +. || .+-|=|.. .++. .+. --++.|+|++.+++ .+.+.+|+
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g--~ayYPt~~-~~~hp~L~--~Dllge~v~a~h~~----Girv~ay~ 64 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGG--YAYYPTKV-GPRHPGLK--RDLLGEQVEACHER----GIRVPAYF 64 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccE--EEEccCCC-CcCCCCCC--cCHHHHHHHHHHHC----CCEEEEEE
Confidence 3456678999999999 64 55 33444443 3333 443 37999999999996 37777777
No 183
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=43.20 E-value=27 Score=28.62 Aligned_cols=44 Identities=7% Similarity=-0.001 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhc
Q 036028 106 QIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQ 167 (193)
Q Consensus 106 ~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~v 167 (193)
++.+.+.+.++.-.+-|+||+=+ +++..-. .|+.++.+++++..
T Consensus 145 ~v~~~i~~~~~~w~~~giDGfR~D~~~~~~~------------------~~~~~~~~~~~~~~ 189 (316)
T PF00128_consen 145 EVREYIIDVLKFWIEEGIDGFRLDAAKHIPK------------------EFWKEFRDEVKEEK 189 (316)
T ss_dssp HHHHHHHHHHHHHHHTTESEEEETTGGGSSH------------------HHHHHHHHHHHHHH
T ss_pred hhhhhhcccccchhhceEeEEEEccccccch------------------hhHHHHhhhhhhhc
Confidence 35555666788888899999999 8875322 57888888888765
No 184
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=43.18 E-value=56 Score=27.78 Aligned_cols=62 Identities=11% Similarity=0.044 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCCeEEE-ecchhhHHhhcCCCC-CCCCChhhhhhHHHHHHHHHHH-hcCCCCCcEEEEc
Q 036028 113 LAARNAIEAGDSNSDF-SNLNYMLIFSIKSDV-EGRRSYKQRKRLRQDRVERLHQ-WQEPPPPPFLFSL 178 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~-N~Rts~eNR~Rf~~Eii~aIR~-~vg~~~~~~~~ri 178 (193)
++=.+|.+.|..-||| +=.|---. --|.. ..+ .+..... ..+|+++||+ +.-..++||++.+
T Consensus 33 e~y~~aL~~GcRcvElD~Wdg~~~~--~eP~V~HG~-tlts~i~-f~~v~~aIk~~AF~~s~yPvIlsl 97 (257)
T cd08591 33 EMYRQVLLSGCRCIELDCWDGKGED--EEPIITHGK-TMCTEIL-FKDVIEAIAETAFKTSEYPVILSF 97 (257)
T ss_pred HHHHHHHHhCCcEEEEEeecCCCCC--CCCEEeeCC-CCccCeE-HHHHHHHHHHHhccCCCCCEEEEE
Confidence 3455678899999999 75441000 00000 001 2222333 4899999998 3222369999987
No 185
>smart00642 Aamy Alpha-amylase domain.
Probab=43.13 E-value=28 Score=27.24 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=22.9
Q ss_pred HHhHHHHHHHHHhcCCeEEEcc--cCCcc
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQL--WHVGR 63 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL--~h~G~ 63 (193)
.+.+++|++++|++|.++++-+ +|.+.
T Consensus 69 ~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 69 MEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 5789999999999999999876 55544
No 186
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=42.87 E-value=1.6e+02 Score=25.01 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=20.3
Q ss_pred HHhHHHHHHHHHhcCCeEEEcccCCcc
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQLWHVGR 63 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL~h~G~ 63 (193)
.+.++++++.+-+.|+.-++=+...|-
T Consensus 20 ~~~l~~lv~~~~~~Gv~gi~v~GstGE 46 (294)
T TIGR02313 20 EEALRELIEFQIEGGSHAISVGGTSGE 46 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCcc
Confidence 568999999999999876665555443
No 187
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=42.86 E-value=72 Score=29.48 Aligned_cols=52 Identities=10% Similarity=0.203 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchh-hHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcC
Q 036028 97 RPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNY-MLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQE 168 (193)
Q Consensus 97 ~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGy-Ll~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg 168 (193)
..|+.+|.-.|++. ..++|++-||+ ++..| -...|+++. +.|.++++|+.+.
T Consensus 20 ~~~~t~dkl~Ia~~-------Ld~~Gv~~IE~~ggatfd~~~~Fl~e~-------------p~e~l~~l~~~~~ 73 (467)
T PRK14041 20 TRMRTEDMLPALEA-------FDRMGFYSMEVWGGATFDVCVRFLNEN-------------PWERLKEIRKRLK 73 (467)
T ss_pred ccCCHHHHHHHHHH-------HHHcCCCEEEecCCccchhhhcccCCC-------------HHHHHHHHHHhCC
Confidence 46888888776554 44569999999 65544 336788774 5777778877654
No 188
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=42.74 E-value=61 Score=28.38 Aligned_cols=63 Identities=11% Similarity=0.166 Sum_probs=35.1
Q ss_pred HHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC--ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc-CcCC
Q 036028 115 ARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR--SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL-PTEW 182 (193)
Q Consensus 115 A~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt--s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri-~~e~ 182 (193)
|+.|++||+..|=+ +=|.-=++-|=|..++ .+ +-...--++.|+++|+|+. | +.|++=+ .-||
T Consensus 97 ~~~ak~aGakY~VlTakHHDGF~LW~S~~t~-~~v~~~~~krDiv~El~~A~rk~-G---lk~G~Y~S~~dw 163 (346)
T PF01120_consen 97 AKLAKDAGAKYVVLTAKHHDGFCLWPSKYTD-YNVVNSGPKRDIVGELADACRKY-G---LKFGLYYSPWDW 163 (346)
T ss_dssp HHHHHHTT-SEEEEEEE-TT--BSS--TT-S-SBGGGGGGTS-HHHHHHHHHHHT-T----EEEEEEESSSC
T ss_pred HHHHHHcCCCEEEeehhhcCccccCCCCCCc-ccccCCCCCCCHHHHHHHHHHHc-C---CeEEEEecchHh
Confidence 56788999999999 7553333334444443 22 2222347999999999997 2 5555544 3466
No 189
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=42.61 E-value=1.2e+02 Score=26.86 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhcCCeEEEcc
Q 036028 39 AWKPIVDAVHQKGGTFFCQL 58 (193)
Q Consensus 39 ~~~~l~~~vh~~G~~i~~QL 58 (193)
.|++.++.+|++|.++.+=+
T Consensus 50 ~l~e~i~~ah~~gkk~~V~~ 69 (347)
T COG0826 50 DLAEAVELAHSAGKKVYVAV 69 (347)
T ss_pred HHHHHHHHHHHcCCeEEEEe
Confidence 39999999999999988844
No 190
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=42.54 E-value=67 Score=27.34 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=35.0
Q ss_pred HHHHHHHHhCCCeEEE-ecchhhHHhhcCCCC-CCCCChhhhhhHHHHHHHHHHH-hcCCCCCcEEEEc
Q 036028 113 LAARNAIEAGDSNSDF-SNLNYMLIFSIKSDV-EGRRSYKQRKRLRQDRVERLHQ-WQEPPPPPFLFSL 178 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~-N~Rts~eNR~Rf~~Eii~aIR~-~vg~~~~~~~~ri 178 (193)
++=.+|...|..-||| +=.|-=- -|.. --+ .+-... -+.+|+++||+ +.-..++||++.+
T Consensus 33 ~~y~~aL~~GcRcvElD~wdg~~~----eP~V~HG~-tlts~i-~f~~v~~~I~~~AF~~s~yPvIlsl 95 (258)
T cd08630 33 EAYVRAFAQGCRCVELDCWEGPGG----EPVIYHGH-TLTSKI-LFRDVIQAVRQHAFTASPYPVILSL 95 (258)
T ss_pred HHHHHHHHcCCcEEEEEeecCCCC----CcEEeeCC-ccccce-EHHHHHHHHHHHhccCCCCCEEEEe
Confidence 3445677899999999 7554100 0110 001 111122 35799999998 3333369999987
No 191
>COG4193 LytD Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]
Probab=42.29 E-value=16 Score=30.47 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCeEE--E-ecchhhHHhhcCCCCCCCC
Q 036028 112 RLAARNAIEAGDSNSD--F-SNLNYMLIFSIKSDVEGRR 147 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVE--I-~ahGyLl~qFlSp~~N~Rt 147 (193)
...|+-|++.|||-|| | |+.-|+-+.|++. +|++|
T Consensus 158 ~~G~~YA~k~gWdtvdKAIiGGAkfI~~sYi~n-~~QnT 195 (245)
T COG4193 158 YYGAKYAKKQGWDTVDKAIIGGAKFIGSSYIDN-YNQNT 195 (245)
T ss_pred hhHHHHHHHcCCCChHHhhhhhhhHhhhhhhcc-ccccc
Confidence 3468899999999999 5 8888999999988 89999
No 192
>PLN02417 dihydrodipicolinate synthase
Probab=42.14 E-value=1.4e+02 Score=25.19 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=21.5
Q ss_pred HHhHHHHHHHHHhcCCeEEEcccCCccc
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQLWHVGRV 64 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL~h~G~~ 64 (193)
.++++++++.+-+.|+.-++=+.+.|-.
T Consensus 21 ~~~~~~~i~~l~~~Gv~Gi~~~GstGE~ 48 (280)
T PLN02417 21 LEAYDSLVNMQIENGAEGLIVGGTTGEG 48 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCcch
Confidence 4689999999988998877766666643
No 193
>TIGR03558 oxido_grp_1 luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296.
Probab=42.12 E-value=36 Score=29.22 Aligned_cols=28 Identities=14% Similarity=0.000 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEE-ecch
Q 036028 105 PQIVNDFRLAARNAIEAGDSNSDF-SNLN 132 (193)
Q Consensus 105 ~~ii~~f~~AA~~a~~AGfDgVEI-~ahG 132 (193)
.+..+...+-|+.|.++|||++-+ -.|+
T Consensus 16 ~~~~~~~~~~a~~AE~lGfd~~w~~Ehh~ 44 (323)
T TIGR03558 16 ADALRNTVELAQHAERLGYHRFWVAEHHN 44 (323)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEecccCC
Confidence 567888889999999999999999 5664
No 194
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=42.10 E-value=48 Score=28.54 Aligned_cols=54 Identities=7% Similarity=0.003 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhh-hhHHHHHHHHHHH
Q 036028 105 PQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQR-KRLRQDRVERLHQ 165 (193)
Q Consensus 105 ~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR-~Rf~~Eii~aIR~ 165 (193)
+.+.+...+-++...+||.|+|.+ -..+ -..+|||.. +++= ..+..+|+++|++
T Consensus 176 ~~i~~~~~~~~~~~~~aGad~I~i~d~~a--~~~~lsp~~-----f~ef~~p~~~~i~~~i~~ 231 (339)
T PRK06252 176 DFVTDFCIEYAKAQLEAGADVICIADPSA--SPELLGPKM-----FEEFVLPYLNKIIDEVKG 231 (339)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeCCCCc--cccccCHHH-----HHHHHHHHHHHHHHHhcc
Confidence 334445566677778999999999 4321 123455421 1110 2345666666665
No 195
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=41.95 E-value=19 Score=29.49 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCCeEEE-ecchhhH
Q 036028 112 RLAARNAIEAGDSNSDF-SNLNYML 135 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI-~ahGyLl 135 (193)
.+..+.++++||||||| . ++++.
T Consensus 18 ~~~l~~~~~~G~~gvEi~~-~~~~~ 41 (274)
T COG1082 18 EEILRKAAELGFDGVELSP-GDLFP 41 (274)
T ss_pred HHHHHHHHHhCCCeEecCC-cccCC
Confidence 45667788999999999 6 44433
No 196
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=41.89 E-value=88 Score=26.50 Aligned_cols=59 Identities=17% Similarity=0.088 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCCCeEEE-ec-chhhHHhh-cCCCCCCCC---ChhhhhhHHHHHHHHHHHhcC
Q 036028 110 DFRLAARNAIEAGDSNSDF-SN-LNYMLIFS-IKSDVEGRR---SYKQRKRLRQDRVERLHQWQE 168 (193)
Q Consensus 110 ~f~~AA~~a~~AGfDgVEI-~a-hGyLl~qF-lSp~~N~Rt---s~eNR~Rf~~Eii~aIR~~vg 168 (193)
+...-|+.+.++|.|+|.+ .. +|+.++.- -.|..+.++ |-..-..+.++.+..|++.++
T Consensus 170 ~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 234 (300)
T TIGR01037 170 DITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVD 234 (300)
T ss_pred hHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCC
Confidence 4566778889999999998 43 34422200 011111112 111112245788888998874
No 197
>PLN02998 beta-glucosidase
Probab=41.59 E-value=54 Score=30.45 Aligned_cols=82 Identities=16% Similarity=0.184 Sum_probs=56.2
Q ss_pred CCHHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 036028 32 WTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDF 111 (193)
Q Consensus 32 ~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f 111 (193)
.+++-++.++++++.+.++|...++=|.|-. .|.. +... ..| +.. +++++.|
T Consensus 116 vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~d---lP~~------------L~~~--yGG--W~n---------~~~v~~F 167 (497)
T PLN02998 116 INPKGLQYYNNLIDELITHGIQPHVTLHHFD---LPQA------------LEDE--YGG--WLS---------QEIVRDF 167 (497)
T ss_pred cCHHHHHHHHHHHHHHHHcCCceEEEecCCC---CCHH------------HHHh--hCC--cCC---------chHHHHH
Confidence 5889999999999999999999999999963 1111 0000 011 111 3688999
Q ss_pred HHHHHHHHHhCCCeE-------EE---ecchhhHHhhcCCC
Q 036028 112 RLAARNAIEAGDSNS-------DF---SNLNYMLIFSIKSD 142 (193)
Q Consensus 112 ~~AA~~a~~AGfDgV-------EI---~ahGyLl~qFlSp~ 142 (193)
++=|+.|.+.==|-| |. +..||+.+.+ -|.
T Consensus 168 ~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~gy~~G~~-~Pg 207 (497)
T PLN02998 168 TAYADTCFKEFGDRVSHWTTINEVNVFALGGYDQGIT-PPA 207 (497)
T ss_pred HHHHHHHHHHhcCcCCEEEEccCcchhhhcchhhccc-CCC
Confidence 999999988666655 44 3357776555 454
No 198
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=41.57 E-value=35 Score=21.63 Aligned_cols=41 Identities=7% Similarity=0.096 Sum_probs=28.9
Q ss_pred ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc----CcCC-CCCccc
Q 036028 148 SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL----PTEW-DSSISL 188 (193)
Q Consensus 148 s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri----~~e~-~~~~~~ 188 (193)
+.|.+.+|..+|.+++.+.+|...-.+.+-+ +++| .++.++
T Consensus 13 t~eqK~~l~~~it~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG~~~ 58 (63)
T TIGR00013 13 TDEQKRQLIEGVTEAMAETLGANLESIVVIIDEMPKNNYGIGGELV 58 (63)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECCEEh
Confidence 6788999999999999999874333444444 5666 445444
No 199
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=40.97 E-value=1.6e+02 Score=25.03 Aligned_cols=27 Identities=11% Similarity=-0.075 Sum_probs=20.1
Q ss_pred HHhHHHHHHHHHhcC-CeEEEcccCCcc
Q 036028 37 VEAWKPIVDAVHQKG-GTFFCQLWHVGR 63 (193)
Q Consensus 37 i~~~~~l~~~vh~~G-~~i~~QL~h~G~ 63 (193)
.++++++++..-++| +.-++=+.+.|-
T Consensus 20 ~~~~~~~i~~~i~~G~v~gi~~~GstGE 47 (290)
T TIGR00683 20 EKGLRQIIRHNIDKMKVDGLYVGGSTGE 47 (290)
T ss_pred HHHHHHHHHHHHhCCCcCEEEECCcccc
Confidence 468999999998898 766665555554
No 200
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=40.96 E-value=22 Score=31.84 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhCCCeEEE-ecc
Q 036028 111 FRLAARNAIEAGDSNSDF-SNL 131 (193)
Q Consensus 111 f~~AA~~a~~AGfDgVEI-~ah 131 (193)
..++.+++.++||||||+ ..+
T Consensus 34 ~~e~i~~la~~GfdgVE~~~~d 55 (382)
T TIGR02631 34 PVEAVHKLAELGAYGVTFHDDD 55 (382)
T ss_pred HHHHHHHHHHhCCCEEEecccc
Confidence 356667799999999999 644
No 201
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=40.72 E-value=1.4e+02 Score=25.06 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=19.1
Q ss_pred HHhHHHHHHHHHhcCCeEEEcccCCc
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQLWHVG 62 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL~h~G 62 (193)
.+.++++++..-++|..-++=+.+.|
T Consensus 21 ~~~~~~~i~~l~~~Gv~gl~~~GstG 46 (289)
T PF00701_consen 21 EDALKRLIDFLIEAGVDGLVVLGSTG 46 (289)
T ss_dssp HHHHHHHHHHHHHTTSSEEEESSTTT
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 57899999999889986555444444
No 202
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=40.42 E-value=45 Score=30.82 Aligned_cols=57 Identities=12% Similarity=0.077 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEE
Q 036028 100 RTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFS 177 (193)
Q Consensus 100 t~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~r 177 (193)
+.+....+-++.-+-++...++|.|.|-| .+|| |.+..++.++.||+..+ +.+|+..
T Consensus 215 ~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g-------------------~~~~~~~~i~~i~~~~~--~~~vi~g 272 (475)
T TIGR01303 215 RIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHG-------------------HQVKMISAIKAVRALDL--GVPIVAG 272 (475)
T ss_pred eehheeeeCccHHHHHHHHHHhCCCEEEEeCCCC-------------------CcHHHHHHHHHHHHHCC--CCeEEEe
Confidence 33444444455566677778899999999 9998 55789999999999874 3677776
No 203
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=40.07 E-value=1.1e+02 Score=27.11 Aligned_cols=32 Identities=13% Similarity=0.082 Sum_probs=25.5
Q ss_pred HHHHHHHHHHH------------HHHHHHHHHhCCCeEEE-ecch
Q 036028 101 TEEIPQIVNDF------------RLAARNAIEAGDSNSDF-SNLN 132 (193)
Q Consensus 101 ~~eI~~ii~~f------------~~AA~~a~~AGfDgVEI-~ahG 132 (193)
.+.|++|-+.| .+.|+.+.+||+|+|=+ -+-|
T Consensus 138 i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpG 182 (343)
T TIGR01305 138 VEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPG 182 (343)
T ss_pred HHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCC
Confidence 45677777777 57899999999999999 5645
No 204
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=40.02 E-value=1.2e+02 Score=26.58 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHhC-CCeEEE-ecchhhHHhhcCCCC-CCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc-C
Q 036028 108 VNDFRLAARNAIEAG-DSNSDF-SNLNYMLIFSIKSDV-EGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL-P 179 (193)
Q Consensus 108 i~~f~~AA~~a~~AG-fDgVEI-~ahGyLl~qFlSp~~-N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri-~ 179 (193)
.++|.+-+....++| +|.+|| -. ||.+ +.| +++.=--.+-+++++|++.+ ..||.++| +
T Consensus 108 ~~~~~d~~~~~~~~~~ad~ielNiS---------cPnt~g~~-~l~~~~e~l~~l~~~vk~~~---~~Pv~vKl~P 170 (310)
T COG0167 108 EEAWADYARLLEEAGDADAIELNIS---------CPNTPGGR-ALGQDPELLEKLLEAVKAAT---KVPVFVKLAP 170 (310)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEcc---------CCCCCChh-hhccCHHHHHHHHHHHHhcc---cCceEEEeCC
Confidence 355667777777888 999999 22 2321 011 33322348889999999987 38999999 5
No 205
>PF08838 DUF1811: Protein of unknown function (DUF1811); InterPro: IPR014938 This entry consists uncharacterised bacterial proteins. Some of the proteins are annotated as being transcriptional regulators (see Q4MQL7 from SWISSPROT, Q65MA2 from SWISSPROT). The structure of one of the proteins has revealed a beta-barrel like structure with helix-turn-helix like motif. ; PDB: 2YXY_A 1SF9_A.
Probab=39.88 E-value=47 Score=24.25 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCC
Q 036028 97 RPLRTEEIPQIVNDFRLAARNAIEAGD 123 (193)
Q Consensus 97 ~~mt~~eI~~ii~~f~~AA~~a~~AGf 123 (193)
.+||.+|+++-|...-.-|+.|.+-|.
T Consensus 5 SeMs~~EL~~Ei~~L~ekarKAEq~G~ 31 (102)
T PF08838_consen 5 SEMSEEELRQEIARLKEKARKAEQLGI 31 (102)
T ss_dssp HC--HHHHHHHHHHHHHHHHHHHHCT-
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 379999999999999999999999874
No 206
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=39.71 E-value=2.3e+02 Score=27.97 Aligned_cols=55 Identities=9% Similarity=-0.016 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhc
Q 036028 104 IPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQ 167 (193)
Q Consensus 104 I~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~v 167 (193)
-+++-+-|-.-=.-..++|+|||-+ .-+ ||..+. ...++|.++....-+|+...+
T Consensus 369 Pe~~~~FY~~~hsyL~s~GVDgVKVD~Q~------~le~l~---~g~ggrv~la~~y~~ALe~S~ 424 (758)
T PLN02355 369 PEKVFSFYNELHSYLASAGIDGVKVDVQN------ILETLG---AGHGGRVKLARKYHQALEASI 424 (758)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEchhh------hHHHhh---cCCCcHHHHHHHHHHHHHHHH
Confidence 3445555555566778899999999 743 222211 035678888888888877654
No 207
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=39.56 E-value=47 Score=28.57 Aligned_cols=55 Identities=5% Similarity=0.019 Sum_probs=36.8
Q ss_pred HHHH-HHhCCCeEEE--e--cchhhHHhhcCCCC----CCCCChhhhhhHHHHHHHHHHHhcCC
Q 036028 115 ARNA-IEAGDSNSDF--S--NLNYMLIFSIKSDV----EGRRSYKQRKRLRQDRVERLHQWQEP 169 (193)
Q Consensus 115 A~~a-~~AGfDgVEI--~--ahGyLl~qFlSp~~----N~Rts~eNR~Rf~~Eii~aIR~~vg~ 169 (193)
|..+ ...|+|+|.+ + ++-+|+.++-.-.. +...+++++.+++++-++...+..|+
T Consensus 207 a~~~l~~~gad~VmigR~~l~~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 270 (319)
T TIGR00737 207 AKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGE 270 (319)
T ss_pred HHHHHHhhCCCEEEEChhhhhCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 4444 4689999999 3 46678877632111 11227888889999888877776654
No 208
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=39.35 E-value=37 Score=29.45 Aligned_cols=58 Identities=16% Similarity=0.032 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCCeEEE--e--cchhhHHhhcCCCC-CCC--C-ChhhhhhHHHHHHHHHHHhcCC
Q 036028 112 RLAARNAIEAGDSNSDF--S--NLNYMLIFSIKSDV-EGR--R-SYKQRKRLRQDRVERLHQWQEP 169 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI--~--ahGyLl~qFlSp~~-N~R--t-s~eNR~Rf~~Eii~aIR~~vg~ 169 (193)
.++.+.....|.|||.| + ++-||+.++..-.. +.. . +++.+.+++++.++...+..|+
T Consensus 207 ~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (321)
T PRK10415 207 LKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGP 272 (321)
T ss_pred HHHHHHHhccCCCEEEEChHhhcCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHCh
Confidence 33333334589999999 4 47889988743221 222 2 6788889999988888776654
No 209
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=39.21 E-value=2e+02 Score=25.53 Aligned_cols=87 Identities=10% Similarity=0.081 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEE-e-cchhhHHh-hcCCCCCCCC-ChhhhhhHHHHHHHHHHHhcCCCCCcEEEE
Q 036028 102 EEIPQIVNDFRLAARNAIEAGDSNSDF-S-NLNYMLIF-SIKSDVEGRR-SYKQRKRLRQDRVERLHQWQEPPPPPFLFS 177 (193)
Q Consensus 102 ~eI~~ii~~f~~AA~~a~~AGfDgVEI-~-ahGyLl~q-FlSp~~N~Rt-s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~r 177 (193)
+-+.++.+.|.+..+...+||++.||| - +-.++++. +.+.. ..|. ..+.-+...++++..+-+.++. +..|.+=
T Consensus 163 ~~~~dlA~al~~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~n~~~~~~p~-d~~v~~H 240 (368)
T PRK06520 163 DYFDDLAKTWRDAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQI-RERGDDPDELARIYARVLNKALAGKPA-DLTIGLH 240 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEecCcchhhccChhhhhhh-hhccCCHHHHHHHHHHHHHHHHhCCCC-CcEEEEE
Confidence 456688888999999999999999999 5 44554431 11111 1122 3332234444666666665554 3445444
Q ss_pred c-CcCCCCCccccc
Q 036028 178 L-PTEWDSSISLTG 190 (193)
Q Consensus 178 i-~~e~~~~~~~~~ 190 (193)
+ --+|.+.--.+|
T Consensus 241 iC~Gn~~~~~~~~~ 254 (368)
T PRK06520 241 VCRGNFRSTWISEG 254 (368)
T ss_pred eecCCCCCcccccc
Confidence 4 244544333333
No 210
>PRK13695 putative NTPase; Provisional
Probab=39.18 E-value=65 Score=24.77 Aligned_cols=56 Identities=11% Similarity=0.033 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEEecchhhHHhhcCCCCCCCC------ChhhhhhHHHHHHHHHH
Q 036028 108 VNDFRLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRR------SYKQRKRLRQDRVERLH 164 (193)
Q Consensus 108 i~~f~~AA~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rt------s~eNR~Rf~~Eii~aIR 164 (193)
-..+.++...+.+.|- .|=+..|--.++.|......++. +.|||-.++-+|+++|+
T Consensus 112 ~~~~~~~l~~~~~~~~-~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~~~ 173 (174)
T PRK13695 112 SPKFVKAVEEVLDSEK-PVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNRLK 173 (174)
T ss_pred hHHHHHHHHHHHhCCC-eEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHHHh
Confidence 3456677777776653 33235565566677777776676 89999999999999886
No 211
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=38.97 E-value=74 Score=28.33 Aligned_cols=45 Identities=16% Similarity=0.061 Sum_probs=31.4
Q ss_pred HHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEE
Q 036028 112 RLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFS 177 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~r 177 (193)
.+-+....+||.|.+-| .+|||- ....+.++.||+..++ .+|+.+
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~s-------------------~~~~~~ik~ik~~~~~--~~viaG 155 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGHS-------------------EHVIDMIKKIKKKFPD--VPVIAG 155 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTTS-------------------HHHHHHHHHHHHHSTT--SEEEEE
T ss_pred HHHHHHHHHcCCCEEEccccCccH-------------------HHHHHHHHHHHHhCCC--ceEEec
Confidence 34455567799999999 999953 3567788999998873 566654
No 212
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=38.88 E-value=1.1e+02 Score=26.74 Aligned_cols=44 Identities=16% Similarity=0.192 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEE
Q 036028 111 FRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFL 175 (193)
Q Consensus 111 f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~ 175 (193)
+++.|+.+++.||..+-| .+.. + +--++.+++||+++|++ ..+.
T Consensus 142 ~~~~a~~~~~~Gf~~~Kikvg~~--------~------------~~d~~~v~~vRe~~G~~-~~l~ 186 (352)
T cd03328 142 LREQLSGWVAQGIPRVKMKIGRD--------P------------RRDPDRVAAARRAIGPD-AELF 186 (352)
T ss_pred HHHHHHHHHHCCCCEEEeecCCC--------H------------HHHHHHHHHHHHHcCCC-CeEE
Confidence 455666777789999999 6321 1 23578899999999973 4443
No 213
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=38.77 E-value=1.7e+02 Score=24.30 Aligned_cols=47 Identities=15% Similarity=0.078 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC-ChhhhhhHHHHHHHHHHHhc
Q 036028 112 RLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR-SYKQRKRLRQDRVERLHQWQ 167 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt-s~eNR~Rf~~Eii~aIR~~v 167 (193)
.+-|....++|+|.|+| +.-. .| |-.. |.+.-.+-+..+|++|++.+
T Consensus 27 ~~~a~~~~~~GAdiIDvG~~st-------~p--~~~~~~~~~E~~rl~~~v~~l~~~~ 75 (258)
T cd00423 27 LEHARRMVEEGADIIDIGGEST-------RP--GAEPVSVEEELERVIPVLRALAGEP 75 (258)
T ss_pred HHHHHHHHHCCCCEEEECCCcC-------CC--CCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 44566778899999999 5421 12 2222 55555555778888888765
No 214
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=38.77 E-value=1e+02 Score=27.90 Aligned_cols=46 Identities=11% Similarity=0.087 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 110 DFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 110 ~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
++++.|+.+.+.||..+-| .+. + ...-.+.|++||+++|++ +.+++
T Consensus 199 ~~~~~a~~~~~~Gf~~~KiKvg~----------------~----~~~d~~~v~avRe~vG~~---~~L~v 245 (415)
T cd03324 199 KLRRLCKEALAQGFTHFKLKVGA----------------D----LEDDIRRCRLAREVIGPD---NKLMI 245 (415)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCC----------------C----HHHHHHHHHHHHHhcCCC---CeEEE
Confidence 3456667777889999999 640 1 123578899999999973 44444
No 215
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=38.14 E-value=1.6e+02 Score=25.44 Aligned_cols=87 Identities=15% Similarity=0.184 Sum_probs=0.0
Q ss_pred hHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH----
Q 036028 36 QVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDF---- 111 (193)
Q Consensus 36 ~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f---- 111 (193)
..+.++.+.+++.+.++++++|.+..++.-.... ..-..-++.+.+.|
T Consensus 27 nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~----------------------------~~~~~~v~~~a~~~~vPV 78 (286)
T COG0191 27 NLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGA----------------------------DSLAHMVKALAEKYGVPV 78 (286)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEecccHHHHhchH----------------------------HHHHHHHHHHHHHCCCCE
Q ss_pred ---------HHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHH
Q 036028 112 ---------RLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQ 165 (193)
Q Consensus 112 ---------~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~ 165 (193)
.+.+++|.++||.-|.| +.|= ++|.-.++..|+++...+
T Consensus 79 ~lHlDHg~~~~~~~~ai~~GFsSvMiDgS~~---------------~~eENi~~tkevv~~ah~ 127 (286)
T COG0191 79 ALHLDHGASFEDCKQAIRAGFSSVMIDGSHL---------------PFEENIAITKEVVEFAHA 127 (286)
T ss_pred EEECCCCCCHHHHHHHHhcCCceEEecCCcC---------------CHHHHHHHHHHHHHHHHH
No 216
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=38.13 E-value=1.1e+02 Score=27.30 Aligned_cols=47 Identities=9% Similarity=-0.105 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHH-hCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEE
Q 036028 109 NDFRLAARNAIE-AGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLF 176 (193)
Q Consensus 109 ~~f~~AA~~a~~-AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ 176 (193)
++|....+.... +|.|.|-| .||||- ...++.|+.||+..++ ..|+.
T Consensus 108 ~d~er~~~L~~~~~g~D~iviD~AhGhs-------------------~~~i~~ik~ik~~~P~--~~vIa 156 (346)
T PRK05096 108 ADFEKTKQILALSPALNFICIDVANGYS-------------------EHFVQFVAKAREAWPD--KTICA 156 (346)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCcH-------------------HHHHHHHHHHHHhCCC--CcEEE
Confidence 445555555553 79999999 999952 3677888888887753 44443
No 217
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=37.97 E-value=1.4e+02 Score=24.78 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=19.8
Q ss_pred HHhHHhHHHHHHHHHhcCCeEEE
Q 036028 34 KEQVEAWKPIVDAVHQKGGTFFC 56 (193)
Q Consensus 34 ~~~i~~~~~l~~~vh~~G~~i~~ 56 (193)
.++++..+++.+.+|++|.++++
T Consensus 119 ~~~~~~~~~i~~~~~~~g~~liv 141 (258)
T TIGR01949 119 WEQIRDLGMIAEICDDWGVPLLA 141 (258)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEE
Confidence 36778899999999999998887
No 218
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=37.91 E-value=89 Score=26.15 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=32.7
Q ss_pred HHHHHHHhCCCeEEE-ecchhhHHhhcCCCC-CCCCChhhhhhHHHHHHHHHHHhc-CCCCCcEEEEc
Q 036028 114 AARNAIEAGDSNSDF-SNLNYMLIFSIKSDV-EGRRSYKQRKRLRQDRVERLHQWQ-EPPPPPFLFSL 178 (193)
Q Consensus 114 AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~-N~Rts~eNR~Rf~~Eii~aIR~~v-g~~~~~~~~ri 178 (193)
+=++|.+.|...||| +=.|-- --|.. .-.| +... --..+|+++||+.. -..++||++.+
T Consensus 34 ~y~~aL~~GcRcvElD~wdg~~----~ep~V~HG~t-~ts~-i~f~dv~~~Ik~~aF~~s~yPvILsl 95 (231)
T cd08598 34 GYIRALQRGCRCVEIDVWDGDD----GEPVVTHGYT-LTSS-VPFRDVCRAIKKYAFVTSPYPLILSL 95 (231)
T ss_pred HHHHHHHhCCcEEEEEeecCCC----CCcEEeeCCC-CcCc-eEHHHHHHHHHHHhccCCCCCEEEEE
Confidence 334567889999999 643310 00000 0001 1111 24679999999842 22369999987
No 219
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=37.87 E-value=1e+02 Score=26.03 Aligned_cols=47 Identities=17% Similarity=0.131 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEE
Q 036028 110 DFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFS 177 (193)
Q Consensus 110 ~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~r 177 (193)
...+-|+.+.++|-|+|.| |--| - ..+-+.+++++||+.. +.|+.+=
T Consensus 29 ~~~ei~~~~~~~GTDaImIGGS~g------------v------t~~~~~~~v~~ik~~~---~lPvilf 76 (240)
T COG1646 29 EADEIAEAAAEAGTDAIMIGGSDG------------V------TEENVDNVVEAIKERT---DLPVILF 76 (240)
T ss_pred ccHHHHHHHHHcCCCEEEECCccc------------c------cHHHHHHHHHHHHhhc---CCCEEEe
Confidence 3456677889999999999 6644 1 2346788999999754 3555553
No 220
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=37.69 E-value=55 Score=28.62 Aligned_cols=48 Identities=13% Similarity=-0.100 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 109 NDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
+++.+.|+.+.+.||..+-| .+. .++ .--++.+++||+++|++ +.+++
T Consensus 143 ~~~~~~a~~~~~~Gf~~~KiKvg~---------------~~~----~~d~~~v~air~~~g~~---~~l~v 191 (355)
T cd03321 143 KLATERAVTAAEEGFHAVKTKIGY---------------PTA----DEDLAVVRSIRQAVGDG---VGLMV 191 (355)
T ss_pred HHHHHHHHHHHHhhhHHHhhhcCC---------------CCh----HhHHHHHHHHHHhhCCC---CEEEE
Confidence 34566777778889999999 641 111 12367899999999973 44455
No 221
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=37.64 E-value=2.6e+02 Score=23.91 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=16.4
Q ss_pred HhHHHHHHHHHhcCCeEEEcc
Q 036028 38 EAWKPIVDAVHQKGGTFFCQL 58 (193)
Q Consensus 38 ~~~~~l~~~vh~~G~~i~~QL 58 (193)
..+++-+..+|+.|.|+++=|
T Consensus 60 ~~~~~~i~~~q~~G~KVllSi 80 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISI 80 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 456777778999999998755
No 222
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=37.60 E-value=86 Score=27.52 Aligned_cols=39 Identities=10% Similarity=0.012 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 110 DFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 110 ~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
...+.|+.+.+.||..+-| . .+.|++||+.+|++ +.+++
T Consensus 129 ~~~~~a~~~~~~Gf~~~KiKv---------------------------~~~v~avre~~G~~---~~l~v 168 (361)
T cd03322 129 ELLEAVERHLAQGYRAIRVQL---------------------------PKLFEAVREKFGFE---FHLLH 168 (361)
T ss_pred HHHHHHHHHHHcCCCeEeeCH---------------------------HHHHHHHHhccCCC---ceEEE
Confidence 3456667777889999988 5 67899999999873 44555
No 223
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=37.52 E-value=78 Score=26.92 Aligned_cols=63 Identities=11% Similarity=0.025 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCC-CCChhhhhhHHHHHHHHHHH-hcCCCCCcEEEEc
Q 036028 112 RLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEG-RRSYKQRKRLRQDRVERLHQ-WQEPPPPPFLFSL 178 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~-Rts~eNR~Rf~~Eii~aIR~-~vg~~~~~~~~ri 178 (193)
+++=.+|.+.|..-||| +=+|--.+ --|...+ +| +.... -..+|+++||+ +.-..++||++.+
T Consensus 32 ~e~y~~aL~~GcRcvElD~wdg~~~~--~eP~v~Hg~t-~t~~i-~f~dv~~~I~~~aF~~s~yPvIlsl 97 (258)
T cd08625 32 VEMYRQVLLTGCRCIELDCWKGRPPE--EEPFITHGFT-MTTEI-PFKDVIEAIAESAFKTSPYPVILSF 97 (258)
T ss_pred HHHHHHHHHcCCCEEEEEecCCCCCC--CCCEEeeCCc-cccCc-CHHHHHHHHHHHhccCCCCCEEEEe
Confidence 34445678899999999 86652100 0121111 11 11111 36799999998 3333369999998
No 224
>PF15496 DUF4646: Domain of unknown function (DUF4646)
Probab=37.39 E-value=39 Score=25.30 Aligned_cols=45 Identities=11% Similarity=-0.097 Sum_probs=35.9
Q ss_pred CCeEEE-ecchhhHHhhcC---C-CCCCCC-ChhhhhhHHHHHHHHHHHhc
Q 036028 123 DSNSDF-SNLNYMLIFSIK---S-DVEGRR-SYKQRKRLRQDRVERLHQWQ 167 (193)
Q Consensus 123 fDgVEI-~ahGyLl~qFlS---p-~~N~Rt-s~eNR~Rf~~Eii~aIR~~v 167 (193)
|+.++| .-+.+|.+.|-- | ..=.+. +.|.-.||+-+|.++.+-.-
T Consensus 17 f~p~~I~s~s~~l~~gFp~~~~P~~l~~~DVs~eDW~~F~~dl~~aa~ls~ 67 (123)
T PF15496_consen 17 FPPFQIPSRSDSLSSGFPYLYPPPPLASHDVSEEDWTRFLNDLSEAASLSP 67 (123)
T ss_pred CCCEEEeecCCccccCCCCcCCCchhhhcCCCHHHHHHHHHHHHHHHhcCc
Confidence 678999 999999999987 3 222344 99999999999999966543
No 225
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=37.35 E-value=1.6e+02 Score=25.58 Aligned_cols=62 Identities=15% Similarity=0.115 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhCCCeEEE-ecchhhHHhh-c-CCCCCCCC---ChhhhhhHHHHHHHHHHHhcCCCCCcEE
Q 036028 110 DFRLAARNAIEAGDSNSDF-SNLNYMLIFS-I-KSDVEGRR---SYKQRKRLRQDRVERLHQWQEPPPPPFL 175 (193)
Q Consensus 110 ~f~~AA~~a~~AGfDgVEI-~ahGyLl~qF-l-Sp~~N~Rt---s~eNR~Rf~~Eii~aIR~~vg~~~~~~~ 175 (193)
+....|+.+.++|.|+|-+ .-- .++- + .|..+..+ |-..-....++.+..+|+.++. +++|.
T Consensus 217 ~~~~ia~~l~~aGad~I~~~n~~---~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~-~ipIi 284 (327)
T cd04738 217 ELEDIADVALEHGVDGIIATNTT---ISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGG-KIPII 284 (327)
T ss_pred HHHHHHHHHHHcCCcEEEEECCc---ccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCC-CCcEE
Confidence 4566777889999999998 431 1110 0 01111111 2111222558889999999874 35544
No 226
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=37.31 E-value=1e+02 Score=26.72 Aligned_cols=64 Identities=16% Similarity=-0.016 Sum_probs=36.9
Q ss_pred HHHHHHHHHhCCCeEEEecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEcCcCCCC
Q 036028 112 RLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSLPTEWDS 184 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri~~e~~~ 184 (193)
.-+|+.++++||+++-+++.|.=. ..=.|-.|.=| + --.++.++.|-+++ ++||.+=+.+.|-+
T Consensus 28 ~~sA~la~~aGF~al~~sg~~vA~-slG~pD~~~~t-~----~e~~~~vrrI~~a~---~lPv~vD~dtGfG~ 91 (289)
T COG2513 28 AGSALLAERAGFKALYLSGAGVAA-SLGLPDLGITT-L----DEVLADARRITDAV---DLPVLVDIDTGFGE 91 (289)
T ss_pred HHHHHHHHHcCCeEEEeccHHHHH-hcCCCcccccc-H----HHHHHHHHHHHhhc---CCceEEeccCCCCc
Confidence 457999999999999994444322 22233332211 1 12334444444454 58888887555543
No 227
>KOG4013 consensus Predicted Cu2+ homeostasis protein CutC [Inorganic ion transport and metabolism]
Probab=37.29 E-value=8.6 Score=31.62 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=27.4
Q ss_pred CCCCHHHHH-HHHHHHHHHHHHHHHhCCCeEEE-ec
Q 036028 97 RPLRTEEIP-QIVNDFRLAARNAIEAGDSNSDF-SN 130 (193)
Q Consensus 97 ~~mt~~eI~-~ii~~f~~AA~~a~~AGfDgVEI-~a 130 (193)
++++..||+ ++--+-.++|.+|.+.|+|-||+ .|
T Consensus 3 r~~s~~~iKlEvCvDs~eSA~nAe~GGAdRiElCSa 38 (255)
T KOG4013|consen 3 RTESQKQIKLEVCVDSLESAENAEAGGADRIELCSA 38 (255)
T ss_pred ccccccceeeeeehhhHHHHHhHhhcCccHhHHhhh
Confidence 456666666 56667788999999999999999 66
No 228
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=37.20 E-value=28 Score=26.04 Aligned_cols=42 Identities=14% Similarity=0.028 Sum_probs=25.0
Q ss_pred HHHHHhCCCeEEE-ecc-hhhHHhhcCCCCCCCCChhhhhhHHHHHHHHH
Q 036028 116 RNAIEAGDSNSDF-SNL-NYMLIFSIKSDVEGRRSYKQRKRLRQDRVERL 163 (193)
Q Consensus 116 ~~a~~AGfDgVEI-~ah-GyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aI 163 (193)
.+|.+.|+|||-| ++| |- +.|..- |. -.+.|+..+.++++.+
T Consensus 46 l~Af~~GADGV~V~gC~~g~--Ch~~~G--n~--~a~~Rv~~~k~~L~~~ 89 (124)
T PF02662_consen 46 LRAFEKGADGVLVAGCHPGD--CHYREG--NY--RAEKRVERLKKLLEEL 89 (124)
T ss_pred HHHHHcCCCEEEEeCCCCCC--CCcchh--hH--HHHHHHHHHHHHHHHc
Confidence 3566789999999 987 32 111111 11 2356777777777644
No 229
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=36.68 E-value=2.9e+02 Score=24.15 Aligned_cols=51 Identities=20% Similarity=0.162 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEE
Q 036028 109 NDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFS 177 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~r 177 (193)
+.+.+-|+.+.++|.|.|-| =-.|++. | .=+.+++.++|+.+++ +.+|.+=
T Consensus 143 e~l~~~a~~~~~~Ga~~i~i~DT~G~~~-----P------------~~v~~~v~~l~~~l~~-~i~ig~H 194 (333)
T TIGR03217 143 EKLAEQAKLMESYGADCVYIVDSAGAML-----P------------DDVRDRVRALKAVLKP-ETQVGFH 194 (333)
T ss_pred HHHHHHHHHHHhcCCCEEEEccCCCCCC-----H------------HHHHHHHHHHHHhCCC-CceEEEE
Confidence 45677778888889999988 5556432 2 1356778888888765 3555543
No 230
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=36.37 E-value=88 Score=26.57 Aligned_cols=58 Identities=10% Similarity=0.035 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhh-hhHHHHHHHHHHHh
Q 036028 102 EEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQR-KRLRQDRVERLHQW 166 (193)
Q Consensus 102 ~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR-~Rf~~Eii~aIR~~ 166 (193)
+-++.+.+...+-++...++|.|+|.+ -..+. ..|+||.. ++.- ..+..+++++|++.
T Consensus 161 ~~l~~i~~~~~~~~~~~~~~G~d~i~i~d~~~~--~~~isp~~-----f~e~~~p~~k~i~~~i~~~ 220 (330)
T cd03465 161 KLLEKCTEFIIRYADALIEAGADGIYISDPWAS--SSILSPED-----FKEFSLPYLKKVFDAIKAL 220 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccc--cCCCCHHH-----HHHHhhHHHHHHHHHHHHc
Confidence 334455555667777778889999999 43321 23455531 1111 34667888888875
No 231
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=36.13 E-value=1.8e+02 Score=26.16 Aligned_cols=70 Identities=13% Similarity=0.027 Sum_probs=36.7
Q ss_pred HHHHHHHHHH-HHHhCCCeEEE-ec------------chhhHHhhcCCCCC--CC-C-ChhhhhhHHHHHHHHHHHhcCC
Q 036028 108 VNDFRLAARN-AIEAGDSNSDF-SN------------LNYMLIFSIKSDVE--GR-R-SYKQRKRLRQDRVERLHQWQEP 169 (193)
Q Consensus 108 i~~f~~AA~~-a~~AGfDgVEI-~a------------hGyLl~qFlSp~~N--~R-t-s~eNR~Rf~~Eii~aIR~~vg~ 169 (193)
.+.|++.+.. +++-|||||.| =- .|-+.+||-+-..+ .- . +.++|..|.. .|+++|++...
T Consensus 106 R~~Fi~siv~~l~~~~fDGidiDWEyP~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~nf~~-Ll~elr~~l~~ 184 (413)
T cd02873 106 RNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFTGDSVVDEKAAEHKEQFTA-LVRELKNALRP 184 (413)
T ss_pred HHHHHHHHHHHHHHcCCCCeEeeeeCCCCcccccccccchhhhhhhcccccccccCCCChhHHHHHHH-HHHHHHHHhcc
Confidence 4556555544 46789999998 32 12233443211111 11 1 3456666654 56777777754
Q ss_pred CCCcEEEEc
Q 036028 170 PPPPFLFSL 178 (193)
Q Consensus 170 ~~~~~~~ri 178 (193)
..+.+.+-+
T Consensus 185 ~~~~ls~av 193 (413)
T cd02873 185 DGLLLTLTV 193 (413)
T ss_pred cCcEEEEEe
Confidence 345555544
No 232
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=35.66 E-value=98 Score=28.65 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEE
Q 036028 99 LRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLF 176 (193)
Q Consensus 99 mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ 176 (193)
++.+....+-++..+-+....++|.|.|=| .+||+ .+.+.+.|+.||+..++ ..|..
T Consensus 216 l~V~aav~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~-------------------~~~~~~~i~~ik~~~p~--~~v~a 273 (479)
T PRK07807 216 LRVAAAVGINGDVAAKARALLEAGVDVLVVDTAHGH-------------------QEKMLEALRAVRALDPG--VPIVA 273 (479)
T ss_pred cchHhhhccChhHHHHHHHHHHhCCCEEEEeccCCc-------------------cHHHHHHHHHHHHHCCC--CeEEe
Confidence 344444445556667788888899999999 99996 24788999999998753 55555
No 233
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=35.65 E-value=1.4e+02 Score=23.26 Aligned_cols=49 Identities=6% Similarity=-0.183 Sum_probs=26.2
Q ss_pred HHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 117 NAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 117 ~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
.+++-|||||+| --+.....+ .+.+ -..+.++.+|++.++..+.+.+-+
T Consensus 99 ~v~~~~~DGidiD~E~~~~~~~---------~~~~----~~~~ll~~lr~~l~~~~~~ls~a~ 148 (210)
T cd00598 99 FLKTYGFDGVDIDWEYPGAADN---------SDRE----NFITLLRELRSALGAANYLLTIAV 148 (210)
T ss_pred HHHHcCCCceEEeeeCCCCcCc---------cHHH----HHHHHHHHHHHHhcccCcEEEEEe
Confidence 346689999999 543211100 1122 344556667777664234555544
No 234
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=35.49 E-value=1.5e+02 Score=24.67 Aligned_cols=56 Identities=9% Similarity=0.027 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCC-------C--ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 109 NDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGR-------R--SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~R-------t--s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
+...+.+++..++|++||-| ..- .++| . +.|.+.+-+..+.++.... + ++.|..|.
T Consensus 84 ~~~~~~v~~~~~~G~~gv~iED~~-----------~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~--~-~~~IiART 149 (243)
T cd00377 84 LNVARTVRELEEAGAAGIHIEDQV-----------GPKKCGHHGGKVLVPIEEFVAKIKAARDARDDL--P-DFVIIART 149 (243)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCC-----------CCccccCCCCCeecCHHHHHHHHHHHHHHHhcc--C-CeEEEEEc
Confidence 34566677888899999999 541 1222 2 6666655555554444443 3 59999996
No 235
>PLN02826 dihydroorotate dehydrogenase
Probab=35.38 E-value=1.6e+02 Score=26.74 Aligned_cols=63 Identities=14% Similarity=0.261 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCC-CCCCChhhhhhHHHHHHHHHHHhcC------CCCCcEEE
Q 036028 105 PQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDV-EGRRSYKQRKRLRQDRVERLHQWQE------PPPPPFLF 176 (193)
Q Consensus 105 ~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~-N~Rts~eNR~Rf~~Eii~aIR~~vg------~~~~~~~~ 176 (193)
++.+++|+..++.+.. ..|.+|| -. ||.+ +.|. +.+. ..+.+++++|+++.. ....||.+
T Consensus 200 ~~~~~Dy~~~~~~~~~-~aDylelNiS---------cPNtpglr~-lq~~-~~l~~ll~~V~~~~~~~~~~~~~~~Pv~v 267 (409)
T PLN02826 200 EDAAADYVQGVRALSQ-YADYLVINVS---------SPNTPGLRK-LQGR-KQLKDLLKKVLAARDEMQWGEEGPPPLLV 267 (409)
T ss_pred cccHHHHHHHHHHHhh-hCCEEEEECC---------CCCCCCccc-ccCh-HHHHHHHHHHHHHHHHhhhccccCCceEE
Confidence 4567889999888865 5999999 22 3432 2232 3332 355677777765421 01378999
Q ss_pred EcC
Q 036028 177 SLP 179 (193)
Q Consensus 177 ri~ 179 (193)
+++
T Consensus 268 Kla 270 (409)
T PLN02826 268 KIA 270 (409)
T ss_pred ecC
Confidence 993
No 236
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=35.32 E-value=1.1e+02 Score=25.08 Aligned_cols=60 Identities=22% Similarity=0.212 Sum_probs=39.5
Q ss_pred HHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 036028 34 KEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRL 113 (193)
Q Consensus 34 ~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~ 113 (193)
+..++.++++++.+|++|.++++...-.+... +.+. -.+.-..
T Consensus 108 ~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~----------------------------------~~~~---~~~~I~~ 150 (236)
T PF01791_consen 108 DEVIEEIAAVVEECHKYGLKVILEPYLRGEEV----------------------------------ADEK---KPDLIAR 150 (236)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEEEEECECHHHB----------------------------------SSTT---HHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEecCchhh----------------------------------cccc---cHHHHHH
Confidence 56789999999999999999998621111100 0000 1223467
Q ss_pred HHHHHHHhCCCeEEE-ec
Q 036028 114 AARNAIEAGDSNSDF-SN 130 (193)
Q Consensus 114 AA~~a~~AGfDgVEI-~a 130 (193)
+++.|.++|.|.|=. -.
T Consensus 151 a~ria~e~GaD~vKt~tg 168 (236)
T PF01791_consen 151 AARIAAELGADFVKTSTG 168 (236)
T ss_dssp HHHHHHHTT-SEEEEE-S
T ss_pred HHHHHHHhCCCEEEecCC
Confidence 888889999999999 54
No 237
>TIGR03841 F420_Rv3093c probable F420-dependent oxidoreductase, Rv3093c family. This model describes a small family of enzymes in the bacterial luciferase-like monooxygenase family, which includes F420-dependent enzymes such as N5,N10-methylenetetrahydromethanopterin reductase as well as FMN-dependent enzymes. All members of this family are from species that produce coenzyme F420; SIMBAL analysis suggests that members of this family bind F420 rather than FMN.
Probab=35.24 E-value=47 Score=28.31 Aligned_cols=36 Identities=17% Similarity=0.017 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhCCCeEEE-ecch---hhHHhhcCCCCC
Q 036028 109 NDFRLAARNAIEAGDSNSDF-SNLN---YMLIFSIKSDVE 144 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI-~ahG---yLl~qFlSp~~N 144 (193)
++..+.|+.|.++|||.|-+ -.|+ +.+--.++..|+
T Consensus 10 ~~~~~~a~~AE~~Gfd~~w~~e~~~~d~~~~laalA~~T~ 49 (301)
T TIGR03841 10 AEATRLARAADELGYTDVWSGEMAGYDAFALATLVAAWAP 49 (301)
T ss_pred HHHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHhCC
Confidence 55677899999999999999 6554 444445666554
No 238
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=35.15 E-value=1.3e+02 Score=26.77 Aligned_cols=45 Identities=11% Similarity=0.028 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEE
Q 036028 111 FRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFL 175 (193)
Q Consensus 111 f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~ 175 (193)
+++.|+.+++.||..+-| .+. .++ .--++.|++||+++|++ ..|.
T Consensus 164 ~~~~a~~~~~~Gf~~~Kikvg~---------------~~~----~~di~~v~avRe~~G~~-~~l~ 209 (385)
T cd03326 164 LRDEMRRYLDRGYTVVKIKIGG---------------APL----DEDLRRIEAALDVLGDG-ARLA 209 (385)
T ss_pred HHHHHHHHHHCCCCEEEEeCCC---------------CCH----HHHHHHHHHHHHhcCCC-CeEE
Confidence 455666777899999999 541 111 23478999999999973 4443
No 239
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=35.14 E-value=42 Score=30.68 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=23.7
Q ss_pred HHhHHHHHHHHHhcCCeEEEcc--cCCcc
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQL--WHVGR 63 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL--~h~G~ 63 (193)
.+.|++|++++|+.|.+|++-+ +|+|.
T Consensus 80 ~~dl~~Li~~~H~~Gi~vi~D~V~NH~~~ 108 (479)
T PRK09441 80 KEELLNAIDALHENGIKVYADVVLNHKAG 108 (479)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcccccC
Confidence 5679999999999999999886 78874
No 240
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=34.95 E-value=2.9e+02 Score=23.58 Aligned_cols=91 Identities=12% Similarity=0.054 Sum_probs=59.3
Q ss_pred CHHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 036028 33 TKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFR 112 (193)
Q Consensus 33 ~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~ 112 (193)
-++.++.+++.++.++++|..+.+-+..+- +.+. .+ ..+ .+.+.
T Consensus 115 ~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~--~~~~--------------------~~-------~~~-------~~~~~ 158 (287)
T PRK05692 115 IAESLERFEPVAEAAKQAGVRVRGYVSCVL--GCPY--------------------EG-------EVP-------PEAVA 158 (287)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEEEEEe--cCCC--------------------CC-------CCC-------HHHHH
Confidence 356788899999999999988766554320 0000 00 011 35567
Q ss_pred HHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 113 LAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
+.++.+.++|.|.|-| =--|++ +|. =..++++++|+++++ .+|.+-.
T Consensus 159 ~~~~~~~~~G~d~i~l~DT~G~~-----~P~------------~v~~lv~~l~~~~~~--~~i~~H~ 206 (287)
T PRK05692 159 DVAERLFALGCYEISLGDTIGVG-----TPG------------QVRAVLEAVLAEFPA--ERLAGHF 206 (287)
T ss_pred HHHHHHHHcCCcEEEeccccCcc-----CHH------------HHHHHHHHHHHhCCC--CeEEEEe
Confidence 7788888999999999 555664 332 256778888888763 5666544
No 241
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=34.67 E-value=93 Score=26.50 Aligned_cols=62 Identities=11% Similarity=0.098 Sum_probs=34.3
Q ss_pred HHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHh-cCCCCCcEEEEc
Q 036028 114 AARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQW-QEPPPPPFLFSL 178 (193)
Q Consensus 114 AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~-vg~~~~~~~~ri 178 (193)
+=.+|.+.|..-||| +=.|-.-. --|..-+--.+.... ...+|+++||+. .-..++||++.+
T Consensus 34 ~y~~aL~~GcRcvElD~wdG~~~~--~ePiV~HG~tlts~i-~f~dv~~~I~~~AF~~S~yPvIlSl 97 (258)
T cd08623 34 MYRQVLLSGCRCVELDCWKGRTAE--EEPVITHGFTMTTEI-SFKEVIEAIAECAFKTSPFPILLSF 97 (258)
T ss_pred HHHHHHHcCCCEEEEEeeCCCCCC--CCCEEeeCCCcccCc-CHHHHHHHHHHHhccCCCCCEEEEe
Confidence 444577899999999 76552100 001110000111112 357999999983 222369999988
No 242
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=34.67 E-value=25 Score=30.53 Aligned_cols=112 Identities=12% Similarity=0.143 Sum_probs=65.0
Q ss_pred HhHHHHHHHHHhcCCeEEEcccCCccccCCCCCC-CCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 036028 38 EAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQP-NGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAAR 116 (193)
Q Consensus 38 ~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~-~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA~ 116 (193)
+.=+++++.+.+.| +++-+.|.+..+..+..+ ...|.++..... . . ..+.+|.||.++|+.|.+.
T Consensus 154 ~~G~~vv~~mn~lG--miiDvSH~s~~~~~dv~~~s~~PviaSHsn~-r----a-l~~h~RNltD~~i~~ia~~------ 219 (309)
T cd01301 154 PFGKELVREMNRLG--IIIDLSHLSERTFWDVLDISNAPVIASHSNA-R----A-LCDHPRNLTDAQLKAIAET------ 219 (309)
T ss_pred HHHHHHHHHHHHcC--CEEEcCCCCHHHHHHHHHhcCCCEEEeccCh-H----H-hcCCCCCCCHHHHHHHHHc------
Confidence 35567888888877 788999998765543221 122333332211 1 0 1357899999999976533
Q ss_pred HHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEcCcCCCC
Q 036028 117 NAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSLPTEWDS 184 (193)
Q Consensus 117 ~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri~~e~~~ 184 (193)
-| -|.| .. ..|+++ ..+.+++ -+.+-|+-|.+.+|.+ .|.++ +||.+
T Consensus 220 ----GG--vigi~~~-----~~fl~~--~~~~~~~----~~~~hi~~i~~l~G~d--hVgiG--sDfdg 267 (309)
T cd01301 220 ----GG--VIGVNFY-----PAFLSP--GADATLD----DVVRHIDYIVDLIGID--HVGLG--SDFDG 267 (309)
T ss_pred ----CC--EEEEeee-----HHHhCC--CCCCCHH----HHHHHHHHHHHhcCCC--eEEEC--cccCC
Confidence 33 3444 32 445532 1122544 3678888888888864 45554 56544
No 243
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=34.35 E-value=57 Score=28.77 Aligned_cols=35 Identities=29% Similarity=0.197 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHH-----------HHHHHHHHHhCCCeEEEecch
Q 036028 98 PLRTEEIPQIVNDF-----------RLAARNAIEAGDSNSDFSNLN 132 (193)
Q Consensus 98 ~mt~~eI~~ii~~f-----------~~AA~~a~~AGfDgVEI~ahG 132 (193)
-++=+||+.+..-. ++-|+.|.++|.+||=+.-||
T Consensus 209 Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~Ave~G~~GIIVSNHG 254 (363)
T KOG0538|consen 209 SLSWKDIKWLRSITKLPIVVKGVLTGEDARKAVEAGVAGIIVSNHG 254 (363)
T ss_pred CCChhhhHHHHhcCcCCeEEEeecccHHHHHHHHhCCceEEEeCCC
Confidence 35556666654432 567999999999999886666
No 244
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=34.21 E-value=43 Score=23.75 Aligned_cols=67 Identities=12% Similarity=0.174 Sum_probs=43.1
Q ss_pred HHHHHHHHHh-CCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc--CcCCCCCcc
Q 036028 112 RLAARNAIEA-GDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL--PTEWDSSIS 187 (193)
Q Consensus 112 ~~AA~~a~~A-GfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri--~~e~~~~~~ 187 (193)
.+|++.|.+. =.| +++ .|.|.|++=.-+|-. .+.=..++++.|++.+++ +-.|.++. .++..+.++
T Consensus 17 ~~Av~~Al~spLl~-~~i~~A~~vLvni~~~~d~--------~l~ev~~~~~~i~~~~~~-~a~ii~G~~id~~l~d~i~ 86 (95)
T PF12327_consen 17 EEAVEQALNSPLLD-VDIKGAKGVLVNITGGPDL--------SLSEVNEAMEIIREKADP-DANIIWGASIDEELEDEIR 86 (95)
T ss_dssp HHHHHHHHTSTTST-S-GGG-SEEEEEEEE-TTS---------HHHHHHHHHHHHHHSST-TSEEEEEEEE-TTGTTEEE
T ss_pred HHHHHHHHhCcccc-CChHHhceEEEEEEcCCCC--------CHHHHHHHHHHHHHHhhc-CceEEEEEEECCCCCCeEE
Confidence 4667777764 345 888 888877776665543 456788999999999987 46666665 666666554
Q ss_pred c
Q 036028 188 L 188 (193)
Q Consensus 188 ~ 188 (193)
+
T Consensus 87 V 87 (95)
T PF12327_consen 87 V 87 (95)
T ss_dssp E
T ss_pred E
Confidence 4
No 245
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=33.93 E-value=2.2e+02 Score=23.87 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=19.5
Q ss_pred HHhHHhHHHHHHHHHhcCCeEEE
Q 036028 34 KEQVEAWKPIVDAVHQKGGTFFC 56 (193)
Q Consensus 34 ~~~i~~~~~l~~~vh~~G~~i~~ 56 (193)
.+..+.++++.+.+|++|.++++
T Consensus 122 ~~~~~~~~~v~~~~~~~g~pl~v 144 (267)
T PRK07226 122 AEMLEDLGEVAEECEEWGMPLLA 144 (267)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEE
Confidence 45678899999999999988777
No 246
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=33.88 E-value=1.1e+02 Score=20.27 Aligned_cols=39 Identities=10% Similarity=-0.021 Sum_probs=30.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH-hCCCeEEE-ecchh
Q 036028 95 SPRPLRTEEIPQIVNDFRLAARNAIE-AGDSNSDF-SNLNY 133 (193)
Q Consensus 95 ~~~~mt~~eI~~ii~~f~~AA~~a~~-AGfDgVEI-~ahGy 133 (193)
...+|+.+++.++.....+.++..++ .|.|++-+ -..|-
T Consensus 31 ~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~ 71 (86)
T cd00468 31 TLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGA 71 (86)
T ss_pred ChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCc
Confidence 34578999999999988888877765 58888888 65553
No 247
>COG3246 Uncharacterized conserved protein [Function unknown]
Probab=33.60 E-value=2e+02 Score=25.08 Aligned_cols=53 Identities=19% Similarity=0.237 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCC
Q 036028 98 PLRTEEIPQIVNDFRLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEP 169 (193)
Q Consensus 98 ~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~ 169 (193)
+.|-+|| +.+|..|.+||+-.+-|..- |.+ -|.|. ....-++++++||+.+++
T Consensus 25 P~TP~qI-------A~~a~~aa~AGAai~HlHvR---------p~d-G~pt~--d~~~yr~~l~rIr~~~~D 77 (298)
T COG3246 25 PVTPDQI-------ASDAIAAAKAGAAILHLHVR---------PED-GRPTL--DPEAYREVLERIRAAVGD 77 (298)
T ss_pred CCCHHHH-------HHHHHHHHhcCcceEEEEec---------CCC-CCccc--CHHHHHHHHHHHHccCCC
Confidence 4555555 77899999999998888220 111 11121 234677999999999875
No 248
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.59 E-value=1.1e+02 Score=25.56 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhCCCeEEE-ec
Q 036028 110 DFRLAARNAIEAGDSNSDF-SN 130 (193)
Q Consensus 110 ~f~~AA~~a~~AGfDgVEI-~a 130 (193)
.+..+.++|.+.|+|+||| ..
T Consensus 12 ~~~~a~~~~~~~G~~~~qif~~ 33 (274)
T TIGR00587 12 GLQAAYNRAAEIGATAFMFFLK 33 (274)
T ss_pred CHHHHHHHHHHhCCCEEEEEec
Confidence 4577899999999999999 54
No 249
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=33.56 E-value=98 Score=26.40 Aligned_cols=62 Identities=13% Similarity=0.099 Sum_probs=34.3
Q ss_pred HHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHH-hcCCCCCcEEEEc
Q 036028 114 AARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQ-WQEPPPPPFLFSL 178 (193)
Q Consensus 114 AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~-~vg~~~~~~~~ri 178 (193)
+=.+|.+.|..-||| +=.|---+ --|..-+=-.+.... ...+|+++||+ +.-..++||++.+
T Consensus 34 ~y~~aL~~GcRcvElD~wdg~~~~--~ePvV~HG~tlts~i-~f~dv~~~I~~~AF~~s~yPvIlsl 97 (261)
T cd08624 34 MYRQVLLSGCRCVELDCWKGKPPD--EEPIITHGFTMTTEI-LFKDAIEAIAESAFKTSPYPVILSF 97 (261)
T ss_pred HHHHHHHcCCcEEEEEecCCCCCC--CCCEEeeCCCcccCc-CHHHHHHHHHHHhccCCCCCEEEEe
Confidence 334577899999999 76652100 001100000111111 46799999998 3322369999988
No 250
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=33.55 E-value=1.2e+02 Score=25.71 Aligned_cols=57 Identities=12% Similarity=0.069 Sum_probs=33.4
Q ss_pred HHHHHhCCCeEEE-ecchhhHHhhcCCCCC-CCCChhhhhhHHHHHHHHHHHhc-CCCCCcEEEEc
Q 036028 116 RNAIEAGDSNSDF-SNLNYMLIFSIKSDVE-GRRSYKQRKRLRQDRVERLHQWQ-EPPPPPFLFSL 178 (193)
Q Consensus 116 ~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N-~Rts~eNR~Rf~~Eii~aIR~~v-g~~~~~~~~ri 178 (193)
.+|.+.|..-||| +=.|-= --|..- -+ .+-.. -...+|+++||+.. -..++||++.+
T Consensus 36 ~~aL~~GcRcvElD~Wdg~~----~eP~V~HG~-t~ts~-i~f~dv~~~I~~~AF~~s~yPvIlsl 95 (254)
T cd08628 36 IRCLRMGCRCIELDCWDGPD----GKPIIYHGW-TRTTK-IKFDDVVQAIKDHAFVTSEYPVILSI 95 (254)
T ss_pred HHHHHcCCcEEEEEeecCCC----CCeEEeeCC-CccCC-cCHHHHHHHHHHHhccCCCCCEEEEE
Confidence 6778899999999 744310 001100 01 11111 24689999999842 22369999987
No 251
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=33.17 E-value=1e+02 Score=29.29 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhH-HhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcE
Q 036028 97 RPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYML-IFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPF 174 (193)
Q Consensus 97 ~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl-~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~ 174 (193)
..|+.+|.-.+++. ..++||+-||+ ++..|=. -.|+++. +.|.++.+|+.+....+..
T Consensus 16 ~~~~t~dkl~ia~~-------L~~~Gv~~IE~~GGatfd~~~~f~~e~-------------~~e~l~~l~~~~~~~~l~~ 75 (582)
T TIGR01108 16 TRMRTEDMLPIAEK-------LDDVGYWSLEVWGGATFDACIRFLNED-------------PWERLRELKKALPNTPLQM 75 (582)
T ss_pred ccCCHHHHHHHHHH-------HHHcCCCEEEecCCcccccccccCCCC-------------HHHHHHHHHHhCCCCEEEE
Confidence 46888887776554 45569999999 7655432 3666653 5677777777664323333
Q ss_pred EEE
Q 036028 175 LFS 177 (193)
Q Consensus 175 ~~r 177 (193)
.+|
T Consensus 76 L~R 78 (582)
T TIGR01108 76 LLR 78 (582)
T ss_pred EEc
Confidence 334
No 252
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=33.07 E-value=1.3e+02 Score=25.60 Aligned_cols=61 Identities=10% Similarity=-0.027 Sum_probs=35.0
Q ss_pred HHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHH-hcCCCCCcEEEEc
Q 036028 113 LAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQ-WQEPPPPPFLFSL 178 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~-~vg~~~~~~~~ri 178 (193)
++=++|...|..-||| +=.|-= --|..-+--.+-... -..+|+++||+ +.-..++||++.+
T Consensus 33 ~~y~~aL~~GcRcvElD~wdG~~----~eP~V~HG~tlts~i-~f~dv~~~I~~~AF~~S~yPvIlsl 95 (254)
T cd08596 33 ELYSQVLLTGCRCVELDCWDGDD----GMPIIYHGHTLTTKI-PFKDVVEAINRSAFITSDYPVILSI 95 (254)
T ss_pred HHHHHHHHcCCcEEEEEeecCCC----CCcEEeeCCCcccCc-CHHHHHHHHHHHhccCCCCCEEEEe
Confidence 4445677899999999 755410 001111110111111 45799999997 3332369999987
No 253
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=32.52 E-value=61 Score=29.60 Aligned_cols=60 Identities=12% Similarity=0.047 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 109 NDFRLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
+.|++.+..+...|.|.|== -|+ |-+|-++| ++.|.++..|.+++..++.|. .....+-+
T Consensus 176 ~~~a~~~y~~~~GGvD~IKD-DE~-l~~q~f~p-------~~eRv~~~~~ai~~a~~eTG~-~~~ya~Ni 235 (424)
T cd08208 176 GEFAELGYQSWLGGLDIAKD-DEM-LADVDWCP-------LEERAALLGKARRRAEAETGV-PKIYLANI 235 (424)
T ss_pred HHHHHHHHHHHcCCcccccc-ccc-ccCCCCCC-------HHHHHHHHHHHHHHHHHhhCC-cceEEEEc
Confidence 34566666666778776621 111 44555555 589999999999999999997 34455555
No 254
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=31.69 E-value=2e+02 Score=24.90 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCC-C-ChhhhhhHHHHHHHHHHHhcCCCCCcEEE
Q 036028 110 DFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGR-R-SYKQRKRLRQDRVERLHQWQEPPPPPFLF 176 (193)
Q Consensus 110 ~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~R-t-s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ 176 (193)
+..+-++...++|.|.||+ +.. | -.|....+ . +..++--+..+..+.||++++ .||..
T Consensus 237 ea~~ia~~Le~~Gvd~iev~~g~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~---iPVi~ 297 (338)
T cd04733 237 DALEVVEALEEAGVDLVELSGGT-Y-----ESPAMAGAKKESTIAREAYFLEFAEKIRKVTK---TPLMV 297 (338)
T ss_pred HHHHHHHHHHHcCCCEEEecCCC-C-----CCccccccccCCccccchhhHHHHHHHHHHcC---CCEEE
Confidence 4567777888899999999 652 1 12222111 1 222333345788889999884 45544
No 255
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=31.59 E-value=2.5e+02 Score=23.49 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCCCeEEEecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhc
Q 036028 112 RLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQ 167 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~v 167 (193)
.+.|+...++|+|.|.|++.+ ..|..+.. +.|.=++-+..+|+++++.+
T Consensus 26 ~~~a~~~~~~GA~iIDIG~~s------t~p~~~~i-~~~~E~~rl~~~v~~~~~~~ 74 (257)
T TIGR01496 26 VAHAERMLEEGADIIDVGGES------TRPGADRV-SPEEELNRVVPVIKALRDQP 74 (257)
T ss_pred HHHHHHHHHCCCCEEEECCCC------CCCCCCCC-CHHHHHHHHHHHHHHHHhcC
Confidence 445667788999999994322 11222211 44444555677777787765
No 256
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=31.39 E-value=1e+02 Score=26.45 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC-ChhhhhhHHHHHHHHHHHh
Q 036028 113 LAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR-SYKQRKRLRQDRVERLHQW 166 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt-s~eNR~Rf~~Eii~aIR~~ 166 (193)
+..++|.++||+.|.+ +. . ++|.=.+..+++++-.+..
T Consensus 87 e~i~~ai~~GftSVM~DgS----------------~l~~eeNi~~T~~vv~~ah~~ 126 (287)
T PF01116_consen 87 EDIKRAIDAGFTSVMIDGS----------------ALPFEENIAITREVVEYAHAY 126 (287)
T ss_dssp HHHHHHHHHTSSEEEEE-T----------------TS-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccccccCC----------------cCCHHHHHHHHHHHHHhhhhh
No 257
>TIGR03560 F420_Rv1855c probable F420-dependent oxidoreductase, Rv1855c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by Rv1855c from Mycobacterium tuberculosis.
Probab=30.83 E-value=54 Score=26.78 Aligned_cols=25 Identities=24% Similarity=0.162 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhCCCeEEE-ecc
Q 036028 107 IVNDFRLAARNAIEAGDSNSDF-SNL 131 (193)
Q Consensus 107 ii~~f~~AA~~a~~AGfDgVEI-~ah 131 (193)
..+...+-|+.|.++|||+|-+ =.|
T Consensus 11 ~~~~~~~~a~~AE~~Gfd~vw~~eh~ 36 (227)
T TIGR03560 11 LYPDLLAVARAAEDAGFDALFRSDHF 36 (227)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEchhc
Confidence 4788889999999999999999 544
No 258
>cd00347 Flavin_utilizing_monoxygenases Flavin-utilizing monoxygenases
Probab=30.70 E-value=54 Score=21.07 Aligned_cols=25 Identities=16% Similarity=-0.069 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEE
Q 036028 104 IPQIVNDFRLAARNAIEAGDSNSDF 128 (193)
Q Consensus 104 I~~ii~~f~~AA~~a~~AGfDgVEI 128 (193)
-....+...+-|++|.+.|||++.+
T Consensus 17 ~~~~~~~~~~~a~~ae~~G~~~~~~ 41 (90)
T cd00347 17 AAEDLEYLVELARLAERLGFDAAWV 41 (90)
T ss_pred HHHHHHHHHHHHHHHHHcCchhhHH
Confidence 3456777888899999999999876
No 259
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=30.67 E-value=1.5e+02 Score=25.01 Aligned_cols=24 Identities=13% Similarity=-0.004 Sum_probs=18.4
Q ss_pred HHhHHhHHHHHHHHHhcCCeEEEc
Q 036028 34 KEQVEAWKPIVDAVHQKGGTFFCQ 57 (193)
Q Consensus 34 ~~~i~~~~~l~~~vh~~G~~i~~Q 57 (193)
......+.++.+...++|.++-.=
T Consensus 24 ~rv~~nt~riL~lL~~~gikATFF 47 (265)
T TIGR03006 24 CRVERNTDRILDLLDRHGVKATFF 47 (265)
T ss_pred chHHHhHHHHHHHHHHcCCcEEEE
Confidence 444568999999999999876543
No 260
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=30.63 E-value=71 Score=27.28 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhh
Q 036028 99 LRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYM 134 (193)
Q Consensus 99 mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyL 134 (193)
+-.+||-+=++.|+.||...++-|+=-|.+ +-||-|
T Consensus 251 imvddiiddvqsfvaaae~lkergaykiyv~athgll 287 (354)
T KOG1503|consen 251 IMVDDIIDDVQSFVAAAEVLKERGAYKIYVMATHGLL 287 (354)
T ss_pred EEehhhHHhHHHHHHHHHHHHhcCceEEEEEeecccc
Confidence 345777777899999999999999999999 999954
No 261
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=30.50 E-value=2.4e+02 Score=29.10 Aligned_cols=28 Identities=18% Similarity=0.521 Sum_probs=24.1
Q ss_pred HHhHHHHHHHHHhcCCeEEEcc--cCCccc
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQL--WHVGRV 64 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL--~h~G~~ 64 (193)
+..||+|++++|+.|.++++-+ +|.+..
T Consensus 554 i~EfK~LV~alH~~GI~VILDVVyNHt~~~ 583 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILDVVYNHTAKV 583 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEeccccccccc
Confidence 6789999999999999999986 676654
No 262
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=30.47 E-value=45 Score=26.78 Aligned_cols=16 Identities=38% Similarity=0.333 Sum_probs=12.5
Q ss_pred HHHHHHHHhCCCeEEE
Q 036028 113 LAARNAIEAGDSNSDF 128 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI 128 (193)
.|-+.|.++|+|+||+
T Consensus 17 ~af~~A~~~gad~iE~ 32 (229)
T cd08562 17 AAFRAAAELGVRWVEF 32 (229)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 3445567899999998
No 263
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=30.37 E-value=1.9e+02 Score=24.18 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 111 FRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 111 f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
..+.+++..+||.+||-| ... -..+.|+++|++. ++|.-|+
T Consensus 91 ~~~~~~~l~~aGa~gv~iED~~-----------------------~~~~~i~ai~~a~----i~ViaRt 132 (240)
T cd06556 91 AFELAKTFMRAGAAGVKIEGGE-----------------------WHIETLQMLTAAA----VPVIAHT 132 (240)
T ss_pred HHHHHHHHHHcCCcEEEEcCcH-----------------------HHHHHHHHHHHcC----CeEEEEe
Confidence 467788888899999999 752 1345567777652 7888887
No 264
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=30.30 E-value=1.3e+02 Score=28.23 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEE
Q 036028 106 QIVNDFRLAARNAIEAGDSNSDF 128 (193)
Q Consensus 106 ~ii~~f~~AA~~a~~AGfDgVEI 128 (193)
.-.+.+...+.++++.||||-.+
T Consensus 322 ~d~~gl~~dk~~~~~~GfdGkwv 344 (511)
T cd00480 322 AAMAKVRADKLREAKAGHDGTWV 344 (511)
T ss_pred hHHHHHHHHHHHHHhCCCCcccc
Confidence 35677889999999999999877
No 265
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=30.26 E-value=40 Score=28.36 Aligned_cols=17 Identities=41% Similarity=0.259 Sum_probs=15.0
Q ss_pred HHHHHHHHHhCCCeEEE
Q 036028 112 RLAARNAIEAGDSNSDF 128 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI 128 (193)
.++|..|.+||+|||=+
T Consensus 25 v~aA~~a~~aGAdgITv 41 (239)
T PF03740_consen 25 VEAARIAEEAGADGITV 41 (239)
T ss_dssp HHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHcCCCEEEe
Confidence 78999999999999987
No 266
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=30.10 E-value=46 Score=27.17 Aligned_cols=16 Identities=13% Similarity=-0.020 Sum_probs=12.7
Q ss_pred HHHHHHHHhCCCeEEE
Q 036028 113 LAARNAIEAGDSNSDF 128 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI 128 (193)
.|-..|.+.|+|+||+
T Consensus 19 ~Af~~A~~~G~d~iE~ 34 (237)
T cd08583 19 DAFEHNYKKGYRVFEV 34 (237)
T ss_pred HHHHHHHHhCCCEEEE
Confidence 4556677899999998
No 267
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=30.07 E-value=4e+02 Score=23.69 Aligned_cols=118 Identities=13% Similarity=0.066 Sum_probs=83.2
Q ss_pred hHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 036028 36 QVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAA 115 (193)
Q Consensus 36 ~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA 115 (193)
.+...-.+++.++..|-|+++-++.+--++.|..+ ..|.+ =..|+-|+.++-+-+|-.-.
T Consensus 102 D~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ------~kPka--------------W~~l~fe~lk~avy~yTk~~ 161 (403)
T COG3867 102 DLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQ------KKPKA--------------WENLNFEQLKKAVYSYTKYV 161 (403)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeccchhhccChhhc------CCcHH--------------hhhcCHHHHHHHHHHHHHHH
Confidence 46777889999999999999999877666655421 01100 13578888888888876655
Q ss_pred HH-HHHhCC--CeEEEecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 116 RN-AIEAGD--SNSDFSNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 116 ~~-a~~AGf--DgVEI~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
.. .++.|. |.|+++-. --+-||-|.-+.| .++.-++++-+-+.+||+ +.| +..|.+-+
T Consensus 162 l~~m~~eGi~pdmVQVGNE--tn~gflwp~Ge~~-~f~k~a~L~n~g~~avre-v~p-~ikv~lHl 222 (403)
T COG3867 162 LTTMKKEGILPDMVQVGNE--TNGGFLWPDGEGR-NFDKMAALLNAGIRAVRE-VSP-TIKVALHL 222 (403)
T ss_pred HHHHHHcCCCccceEeccc--cCCceeccCCCCc-ChHHHHHHHHHHhhhhhh-cCC-CceEEEEe
Confidence 44 477886 57777211 2234778877777 788888999999999999 555 47777776
No 268
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=30.06 E-value=77 Score=19.92 Aligned_cols=42 Identities=12% Similarity=0.231 Sum_probs=29.1
Q ss_pred ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc----CcCC-CCCcccc
Q 036028 148 SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL----PTEW-DSSISLT 189 (193)
Q Consensus 148 s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri----~~e~-~~~~~~~ 189 (193)
|-|.+.++..+|.+++.+.+|-..-.+.+-| +++| .++.++.
T Consensus 13 s~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e~~~~~w~~gG~~~~ 59 (62)
T PRK00745 13 TVEQKRKLVEEITRVTVETLGCPPESVDIIITDVKRENWATGGKLWS 59 (62)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCChhHEEEEEEEcChHHeeECCEEcC
Confidence 7788999999999999999883123344444 5666 4455544
No 269
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=30.03 E-value=1e+02 Score=18.94 Aligned_cols=35 Identities=14% Similarity=0.359 Sum_probs=24.7
Q ss_pred ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc----CcCC
Q 036028 148 SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL----PTEW 182 (193)
Q Consensus 148 s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri----~~e~ 182 (193)
+.|.+.++..+|.+++.+..|...-.+.+=+ +++|
T Consensus 12 t~eqk~~l~~~i~~~l~~~~g~~~~~v~V~i~e~~~~~~ 50 (58)
T cd00491 12 TDEQKRELIERVTEAVSEILGAPEATIVVIIDEMPKENW 50 (58)
T ss_pred CHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCchhc
Confidence 5788999999999999998764223344433 4555
No 270
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.90 E-value=1e+02 Score=25.12 Aligned_cols=51 Identities=12% Similarity=-0.012 Sum_probs=37.3
Q ss_pred HHHHHHHHhCCCeEEE--ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc-CcCC
Q 036028 113 LAARNAIEAGDSNSDF--SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL-PTEW 182 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI--~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri-~~e~ 182 (193)
+-|..|.+.|.|.|.+ -+.|.|-..|= + +|++||+.++. +..|..-+ ..-|
T Consensus 11 eEA~eAieGGAdIiDVKNP~EGSLGANFP--W----------------vIr~i~Ev~p~-d~~vSAT~GDvpY 64 (235)
T COG1891 11 EEAIEAIEGGADIIDVKNPAEGSLGANFP--W----------------VIREIREVVPE-DQEVSATVGDVPY 64 (235)
T ss_pred HHHHHHhhCCCceEeccCcccCcccCCCh--H----------------HHHHHHHhCcc-ceeeeeeecCCCC
Confidence 3477789999999999 57787777663 1 67788888876 46777666 4445
No 271
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=29.89 E-value=2.4e+02 Score=21.70 Aligned_cols=69 Identities=13% Similarity=0.042 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHh
Q 036028 97 RPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQW 166 (193)
Q Consensus 97 ~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~ 166 (193)
..++.+++.++++.|.+......+. ++|..+ ...+-++.-|-.|..+.-....+=.+.++++++++++.
T Consensus 52 ~~~~~~~~~~~l~~~~~~~~~~i~~-~gg~v~~~~Gd~~l~~F~~~~~~~~~~a~~a~~~al~l~~~~~~~ 121 (194)
T smart00044 52 SEATPEQVVTLLNDLYSRFDRIIDR-HGGYKVKTIGDAYMVVSGLPTEALVDHAELAADEALDMVESLKTV 121 (194)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHh-cCeEEEEEeCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999888877665 567777 44444677776665432112333457778888877653
No 272
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=29.70 E-value=1.7e+02 Score=24.41 Aligned_cols=58 Identities=10% Similarity=-0.012 Sum_probs=34.8
Q ss_pred HHHHHHhCCCeEEE-ecchhhHHhhcCCCCCC-CCChhhhhhHHHHHHHHHHHhc-CCCCCcEEEEc
Q 036028 115 ARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEG-RRSYKQRKRLRQDRVERLHQWQ-EPPPPPFLFSL 178 (193)
Q Consensus 115 A~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~-Rts~eNR~Rf~~Eii~aIR~~v-g~~~~~~~~ri 178 (193)
=++|.+.|...||| +=.|. .-.|...+ .| +-. ---+.+|+++||+.. -..++||++.+
T Consensus 35 y~~aL~~GcRcvElD~Wdg~----~~ep~V~HG~t-~ts-~i~f~dvl~~I~~~aF~~s~yPvILsl 95 (228)
T cd08599 35 IIEALLRGCRVIELDLWPGG----RGDICVLHGGT-LTK-PVKFEDCIKAIKENAFTASEYPVIITL 95 (228)
T ss_pred HHHHHHhCCCEEEEEeecCC----CCCeEEEeCCC-CcC-CcCHHHHHHHHHHHhccCCCCCEEEEE
Confidence 45677899999999 75541 11122211 11 111 124679999999853 32368999987
No 273
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=29.58 E-value=46 Score=27.47 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=13.8
Q ss_pred HHHHHHHHHhCCCeEEE
Q 036028 112 RLAARNAIEAGDSNSDF 128 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI 128 (193)
..|-+.|.++|+|+||+
T Consensus 25 ~~Af~~A~~~G~d~vE~ 41 (249)
T PRK09454 25 LAAIDVGARYGHRMIEF 41 (249)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 34556788999999998
No 274
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=29.22 E-value=84 Score=30.46 Aligned_cols=27 Identities=0% Similarity=0.090 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCe-EEEecchhhHHh
Q 036028 97 RPLRTEEIPQIVNDFRLAARNAIEAGDSN-SDFSNLNYMLIF 137 (193)
Q Consensus 97 ~~mt~~eI~~ii~~f~~AA~~a~~AGfDg-VEI~ahGyLl~q 137 (193)
.-||-++|+++.+. | ||||+|+|-.+.
T Consensus 163 ~~LtWeqIreM~~s--------------GlvEIGSHT~~sH~ 190 (671)
T PRK14582 163 YFATWQQVREVARS--------------RLVEIASHTWNSHY 190 (671)
T ss_pred cCCCHHHHHHHHhC--------------CCeEEEcCCchhcc
Confidence 46888898888763 7 899999986555
No 275
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=29.16 E-value=77 Score=25.65 Aligned_cols=51 Identities=10% Similarity=0.107 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 111 FRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 111 f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
....+..+...|.|.||+ .-. |-. . =...+.+.+..+|+.++- ++.|.+|-
T Consensus 12 ~~~~~~~~~~~~~D~vElRlD~--l~~----~----------~~~~~~~~l~~lr~~~~~-piI~T~R~ 63 (224)
T PF01487_consen 12 LLAELEEAESSGADAVELRLDY--LEN----D----------SAEDISEQLAELRRSLDL-PIIFTVRT 63 (224)
T ss_dssp HHHHHHHHHHTTTSEEEEEGGG--STT----T----------SHHHHHHHHHHHHHHCTS-EEEEE--B
T ss_pred HHHHHHHHHhcCCCEEEEEecc--ccc----c----------ChHHHHHHHHHHHHhCCC-CEEEEecc
Confidence 344455566669999999 541 111 0 113677888889998842 45556664
No 276
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=29.03 E-value=47 Score=27.65 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=12.7
Q ss_pred HHHHHHHHhCCCeEEE
Q 036028 113 LAARNAIEAGDSNSDF 128 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI 128 (193)
.|-+.|.++|+|+||+
T Consensus 24 ~Af~~A~~~Gad~iE~ 39 (265)
T cd08564 24 PSFRRALEIGVDGVEL 39 (265)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 4556667899999998
No 277
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=28.97 E-value=5.2e+02 Score=25.56 Aligned_cols=54 Identities=11% Similarity=0.034 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhc
Q 036028 105 PQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQ 167 (193)
Q Consensus 105 ~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~v 167 (193)
+++-+-|-.-=.-..++|+|||-+ .-+ +|.-. . ...+.|.++.....+|..+.+
T Consensus 361 ~~~~~FYd~~hsyL~s~GVDgVKVD~Q~--~le~l-~------~~~ggrv~l~~ay~~ALe~S~ 415 (750)
T PLN02684 361 KKVYKFYNELHSYLADAGIDGVKVDVQC--ILETL-G------AGLGGRVELTRQYHQALDASV 415 (750)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEChhh--hHHHh-h------cccCcHHHHHHHHHHHHHHHH
Confidence 344444555556678899999999 754 12111 1 034678888887777777543
No 278
>PRK12568 glycogen branching enzyme; Provisional
Probab=28.80 E-value=5.7e+02 Score=25.16 Aligned_cols=120 Identities=12% Similarity=0.038 Sum_probs=62.8
Q ss_pred HHhHHHHHHHHHhcCCeEEEcc--cCCccccCC--CCCCCCCCcc-c--cCCCCCCCCCCCCCCCC-CCCCCHHHHHHHH
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQL--WHVGRVSTF--GLQPNGKAPI-S--STNKGVTPGLDGQDWSS-PRPLRTEEIPQIV 108 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL--~h~G~~~~~--~~~~~~~~~~-~--pS~~~~~~~~~g~~~~~-~~~mt~~eI~~ii 108 (193)
.+.+|+|++++|+.|.++++.+ +|.+..... .+ ++...+ . |...... .+.. .-..+..++.
T Consensus 318 ~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~~l~~f--dg~~~Ye~~d~~~g~~~------~W~~~~~N~~~peVr--- 386 (730)
T PRK12568 318 PDGFAQFVDACHRAGIGVILDWVSAHFPDDAHGLAQF--DGAALYEHADPREGMHR------DWNTLIYNYGRPEVT--- 386 (730)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccccCCccccccccC--CCccccccCCCcCCccC------CCCCeecccCCHHHH---
Confidence 5789999999999999999987 566654321 11 111101 0 0000000 0100 0122333333
Q ss_pred HHHHHHHHHH-HHhCCCeEEE-ecchhhHHhh------cCC-CCCCCCChhhhhhHHHHHHHHHHHhcC
Q 036028 109 NDFRLAARNA-IEAGDSNSDF-SNLNYMLIFS------IKS-DVEGRRSYKQRKRLRQDRVERLHQWQE 168 (193)
Q Consensus 109 ~~f~~AA~~a-~~AGfDgVEI-~ahGyLl~qF------lSp-~~N~Rts~eNR~Rf~~Eii~aIR~~vg 168 (193)
+-+.++|+.= .+-|.||.=+ +...-|--.+ ..| ...-|.++| -..|+.++-+.|++..+
T Consensus 387 ~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~e-a~~Fl~~ln~~v~~~~P 454 (730)
T PRK12568 387 AYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLE-AVAFLRQLNREIASQFP 454 (730)
T ss_pred HHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChH-HHHHHHHHHHHHHHHCC
Confidence 3333444444 5689999999 7654332111 122 111122332 46799999999998864
No 279
>COG1659 Uncharacterized protein, linocin/CFP29 homolog [Function unknown]
Probab=28.76 E-value=50 Score=27.56 Aligned_cols=25 Identities=20% Similarity=0.086 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeE
Q 036028 102 EEIPQIVNDFRLAARNAIEAGDSNS 126 (193)
Q Consensus 102 ~eI~~ii~~f~~AA~~a~~AGfDgV 126 (193)
++..++.+.-++|-.+..++||||=
T Consensus 145 e~p~~~~~~iV~alS~l~~~G~~gp 169 (267)
T COG1659 145 EDPREIPDVIVQALSELRLAGVDGP 169 (267)
T ss_pred cccchHHHHHHHHHHHHHHcccCCc
Confidence 4556788899999999999999984
No 280
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=28.74 E-value=82 Score=25.10 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=24.9
Q ss_pred cEEEeCCceeCCCCCCCCCCccCCCHHhHHhHHHHHHHHHhcCCe
Q 036028 9 GFLIAEATGVFDTVQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGT 53 (193)
Q Consensus 9 GlIi~~~~~V~~~~~~~~~~~~i~~~~~i~~~~~l~~~vh~~G~~ 53 (193)
||||||+-. ..+...+-.+.+.++++.|..++++..
T Consensus 65 GlIITGApv---------e~~~fe~v~Yw~El~~i~dwa~~~v~s 100 (175)
T cd03131 65 GLIVTGAPV---------EHLPFEQVDYWEELTEILDWAKTHVTS 100 (175)
T ss_pred EEEEeCCCc---------ccCCccccchHHHHHHHHHHHHHhCcc
Confidence 999998742 223334445667789999999988753
No 281
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=28.56 E-value=42 Score=29.74 Aligned_cols=42 Identities=21% Similarity=0.217 Sum_probs=33.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE--ecchhhH-----HhhcCCCCCCCC
Q 036028 94 SSPRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF--SNLNYML-----IFSIKSDVEGRR 147 (193)
Q Consensus 94 ~~~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI--~ahGyLl-----~qFlSp~~N~Rt 147 (193)
..+++||.+||.+|++.=. | ||| ..||.|+ --|+|.+.|.|+
T Consensus 142 Vl~rEls~~ei~~i~~~~~-----------~-veiEvfVhGalcia~SgRC~ls~~~~~~~ 190 (347)
T COG0826 142 VLPRELSLEEIKEIKEQTP-----------D-VEIEVFVHGALCIAYSGRCLLSNYFTGRS 190 (347)
T ss_pred EeCccCCHHHHHHHHHhCC-----------C-ceEEEEEecchhhccCchhhhhhhccCCC
Confidence 3689999999999987533 4 777 7899876 458888999888
No 282
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=28.43 E-value=50 Score=27.45 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=11.8
Q ss_pred HHHHHHHhCCCeEEE
Q 036028 114 AARNAIEAGDSNSDF 128 (193)
Q Consensus 114 AA~~a~~AGfDgVEI 128 (193)
|-+.|.++|+|+||+
T Consensus 21 Af~~A~~~Gad~iE~ 35 (252)
T cd08574 21 SFEKALEHGVYGLET 35 (252)
T ss_pred HHHHHHHcCCCEEEE
Confidence 445567799999998
No 283
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=28.41 E-value=2.1e+02 Score=26.48 Aligned_cols=62 Identities=11% Similarity=0.118 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhH-HhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCc
Q 036028 96 PRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYML-IFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPP 173 (193)
Q Consensus 96 ~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl-~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~ 173 (193)
...|+.+|+..+.. ...++||+-||+ |+-.|=. -.|+.. + +-|-++++|+.+....+.
T Consensus 29 atr~~t~d~l~ia~-------~ld~~G~~siE~wGGAtfd~~~rfl~e------d-------pwerlr~~r~~~~nt~lq 88 (468)
T PRK12581 29 ATRLSIEDMLPVLT-------ILDKIGYYSLECWGGATFDACIRFLNE------D-------PWERLRTLKKGLPNTRLQ 88 (468)
T ss_pred ccCCCHHHHHHHHH-------HHHhcCCCEEEecCCcchhhhhcccCC------C-------HHHHHHHHHHhCCCCcee
Confidence 45688888877544 445569999999 7766643 334322 2 245556666666543333
Q ss_pred EEEE
Q 036028 174 FLFS 177 (193)
Q Consensus 174 ~~~r 177 (193)
..+|
T Consensus 89 mLlR 92 (468)
T PRK12581 89 MLLR 92 (468)
T ss_pred eeec
Confidence 3333
No 284
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=28.40 E-value=1.1e+02 Score=21.73 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=26.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Q 036028 95 SPRPLRTEEIPQIVNDFRLAARNAIEAGD 123 (193)
Q Consensus 95 ~~~~mt~~eI~~ii~~f~~AA~~a~~AGf 123 (193)
.|..|+.++.+++...-...|...+++|.
T Consensus 11 ~P~~~~~~~~~~~~a~E~~~a~eLq~~G~ 39 (91)
T PF02426_consen 11 VPPDMPPEEVDRLKAREKARAQELQRQGK 39 (91)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence 57889999999999999999999999884
No 285
>cd01209 SHC SHC phosphotyrosine-binding (PTB) domain. SHC phosphotyrosine-binding (PTB) domain. SHC is a substrate for receptor tyrosine kinases, which can interact with phosphoproteins at NPXY motifs. SHC contains an PTB domain followed by an SH2 domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=28.35 E-value=53 Score=25.97 Aligned_cols=24 Identities=8% Similarity=0.232 Sum_probs=21.3
Q ss_pred CC-ChhhhhhHHHHHHHHHHHhcCC
Q 036028 146 RR-SYKQRKRLRQDRVERLHQWQEP 169 (193)
Q Consensus 146 Rt-s~eNR~Rf~~Eii~aIR~~vg~ 169 (193)
|+ +++.|+...+|.|.+|++++|.
T Consensus 28 r~~~~~~Rtqv~rEaI~rV~ea~~~ 52 (160)
T cd01209 28 RALDFETRTQVTRECISLVCEAVGG 52 (160)
T ss_pred ccCCcchhHHHHHHHHHHHHhcccc
Confidence 66 8899999999999999998764
No 286
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=28.31 E-value=1.1e+02 Score=21.53 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhh
Q 036028 97 RPLRTEEIPQIVNDFRLAARNAIEAGDSNSDFSNLNYM 134 (193)
Q Consensus 97 ~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI~ahGyL 134 (193)
..+|..+++.+++.|.+....+...|-. |+|.+-|++
T Consensus 16 ~~~s~~~v~~vl~~~~~~i~~~L~~g~~-V~l~gfG~F 52 (99)
T PRK00285 16 VGLSKREAKELVELFFEEIRDALENGEQ-VKLSGFGNF 52 (99)
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHHcCCe-EEEcCCEEE
Confidence 3589999999999999999999999876 888666654
No 287
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=28.25 E-value=75 Score=25.85 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=27.5
Q ss_pred CCCHHhHHhHHHHHHHHHhcCCeEEEcccCC
Q 036028 31 IWTKEQVEAWKPIVDAVHQKGGTFFCQLWHV 61 (193)
Q Consensus 31 i~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~ 61 (193)
..++..+..++++++.++++|.++++-|++.
T Consensus 55 ~~~~~~~~~ld~~v~~a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 55 NYDETYLARLDRIVDAAQAYGIYVILDLHNA 85 (281)
T ss_dssp SBTHHHHHHHHHHHHHHHHTT-EEEEEEEES
T ss_pred cccHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 4678999999999999999999999999875
No 288
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=28.19 E-value=1.2e+02 Score=26.15 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc-CcCCCCCcc
Q 036028 111 FRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL-PTEWDSSIS 187 (193)
Q Consensus 111 f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri-~~e~~~~~~ 187 (193)
+.+-..+..++|.|||-+ |--|=. .+| |.|.|.+++ +.+++.++. ..+|+.++ +....+.+.
T Consensus 27 ~~~lv~~li~~Gv~gi~~~GttGE~--~~L--------s~eEr~~v~----~~~v~~~~g-rvpviaG~g~~~t~eai~ 90 (299)
T COG0329 27 LRRLVEFLIAAGVDGLVVLGTTGES--PTL--------TLEERKEVL----EAVVEAVGG-RVPVIAGVGSNSTAEAIE 90 (299)
T ss_pred HHHHHHHHHHcCCCEEEECCCCccc--hhc--------CHHHHHHHH----HHHHHHHCC-CCcEEEecCCCcHHHHHH
Confidence 344445667889999999 765511 011 678887764 444555544 36688887 444444443
No 289
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=28.08 E-value=3.4e+02 Score=23.30 Aligned_cols=47 Identities=19% Similarity=0.086 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCC-ChhhhhhHHHHHHHHHHHhc
Q 036028 112 RLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR-SYKQRKRLRQDRVERLHQWQ 167 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt-s~eNR~Rf~~Eii~aIR~~v 167 (193)
..-|....+.|+|.|+| +.-. .| +-.. |.|.=++=++.+|+++++.+
T Consensus 41 ~~~a~~~~~~GAdIIDIGgeST-------rP--g~~~v~~eeE~~Rv~pvI~~l~~~~ 89 (282)
T PRK11613 41 VKHANLMINAGATIIDVGGEST-------RP--GAAEVSVEEELDRVIPVVEAIAQRF 89 (282)
T ss_pred HHHHHHHHHCCCcEEEECCCCC-------CC--CCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 44466778899999999 5421 11 1122 66666666788888898765
No 290
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=27.92 E-value=52 Score=26.64 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=12.8
Q ss_pred HHHHHHHHhCCCeEEE
Q 036028 113 LAARNAIEAGDSNSDF 128 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI 128 (193)
.|-+.|.++|+|+||+
T Consensus 18 ~af~~A~~~Gad~iE~ 33 (226)
T cd08568 18 EAFKKAIEYGADGVEL 33 (226)
T ss_pred HHHHHHHHcCcCEEEE
Confidence 4556677899999997
No 291
>PRK12677 xylose isomerase; Provisional
Probab=27.90 E-value=47 Score=29.70 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=16.2
Q ss_pred HHHHHHHHHhCCCeEEE-ecc
Q 036028 112 RLAARNAIEAGDSNSDF-SNL 131 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI-~ah 131 (193)
.++..++.++|||+||+ ..+
T Consensus 34 ~E~v~~~a~~Gf~gVElh~~~ 54 (384)
T PRK12677 34 VEAVHKLAELGAYGVTFHDDD 54 (384)
T ss_pred HHHHHHHHHhCCCEEEecccc
Confidence 45668889999999999 643
No 292
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=27.81 E-value=55 Score=27.52 Aligned_cols=17 Identities=29% Similarity=0.094 Sum_probs=15.9
Q ss_pred HHHHHHHHHhCCCeEEE
Q 036028 112 RLAARNAIEAGDSNSDF 128 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI 128 (193)
..+|..|.+||+|||=+
T Consensus 24 v~aA~~a~~aGAdgITv 40 (237)
T TIGR00559 24 LRAALIAEQAGADGITV 40 (237)
T ss_pred HHHHHHHHHcCCCEEEe
Confidence 78999999999999976
No 293
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=27.78 E-value=2.9e+02 Score=27.86 Aligned_cols=30 Identities=13% Similarity=0.349 Sum_probs=25.5
Q ss_pred HhHHhHHHHHHHHHhcCCeEEEcc--cCCccc
Q 036028 35 EQVEAWKPIVDAVHQKGGTFFCQL--WHVGRV 64 (193)
Q Consensus 35 ~~i~~~~~l~~~vh~~G~~i~~QL--~h~G~~ 64 (193)
..|..+|+|++++|+.|.++++-. +|.+..
T Consensus 401 ~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~ 432 (898)
T TIGR02103 401 ARIKEFREMVQALNKTGLNVVMDVVYNHTNAS 432 (898)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeeccccccc
Confidence 457899999999999999999876 777754
No 294
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=27.68 E-value=98 Score=28.15 Aligned_cols=34 Identities=18% Similarity=0.398 Sum_probs=28.4
Q ss_pred ccCCCHHhHHhHHHHHHHHHhcCCeEEEcccCCc
Q 036028 29 PGIWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG 62 (193)
Q Consensus 29 ~~i~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G 62 (193)
.+-.+++.++.++++++.+.++|.+.++-|.|..
T Consensus 90 ~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~ 123 (455)
T PF00232_consen 90 EGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFD 123 (455)
T ss_dssp SSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS-
T ss_pred ccccCHhHhhhhHHHHHHHHhhccceeeeeeecc
Confidence 3457899999999999999999999999999963
No 295
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=27.61 E-value=56 Score=27.43 Aligned_cols=17 Identities=29% Similarity=0.073 Sum_probs=15.9
Q ss_pred HHHHHHHHHhCCCeEEE
Q 036028 112 RLAARNAIEAGDSNSDF 128 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI 128 (193)
..+|..|.+||+|||=+
T Consensus 24 v~aA~~a~~aGAdgITv 40 (234)
T cd00003 24 VEAALLAEKAGADGITV 40 (234)
T ss_pred HHHHHHHHHcCCCEEEe
Confidence 78999999999999977
No 296
>PRK04081 hypothetical protein; Provisional
Probab=27.41 E-value=1.1e+02 Score=25.16 Aligned_cols=94 Identities=20% Similarity=0.168 Sum_probs=56.6
Q ss_pred HHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-----HHH
Q 036028 42 PIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRL-----AAR 116 (193)
Q Consensus 42 ~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~-----AA~ 116 (193)
...++..+.|+.++++=.-.|.+-..+. .|-.++.+.... ++| .-|-|++|||+.||++=.. +..
T Consensus 39 ~~~~~s~kqGafviIeE~a~G~YKI~eE-----~Ps~~Trvilr~-~dG----~ER~LS~eE~dkLi~eE~~KId~gTS~ 108 (207)
T PRK04081 39 SSLQASQQQGAFVIIEEQADGSYKILEE-----YPSSETRVVLRD-LDG----TERVLSQEEIDKLIKEEEAKIDNGTSN 108 (207)
T ss_pred HHHHHHhhcCcEEEEEecCCCceEeeee-----cCCCcceEEEec-CCC----cccccCHHHHHHHHHHHHHhhccCCCc
Confidence 3467788999999998877776544332 122223322221 122 5688999999999987443 111
Q ss_pred HH--------HHhCCCeEEE-ecchhhHHhhc-CCCCCC
Q 036028 117 NA--------IEAGDSNSDF-SNLNYMLIFSI-KSDVEG 145 (193)
Q Consensus 117 ~a--------~~AGfDgVEI-~ahGyLl~qFl-Sp~~N~ 145 (193)
+- --.|.-++-| .|.|+||..++ +.++|-
T Consensus 109 Ltnpn~~~ss~G~gLg~~lLasaAGaiLGswIGnkLfNN 147 (207)
T PRK04081 109 LTNPNNSNSSGGMGLGGTILASAAGAILGSWIGNKLFNN 147 (207)
T ss_pred cCCCCcccccccccHHHHHHHHHHHHHHhhhhhHhhhcC
Confidence 11 1234445566 78899998877 445554
No 297
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=27.40 E-value=3.2e+02 Score=26.34 Aligned_cols=92 Identities=18% Similarity=0.079 Sum_probs=50.0
Q ss_pred HHhHHHHHHHHHhcCCeEEEcc--cCCccccCCCCCCCCCCccccCCCCCCCC-CCCC--CCC-CCCCCCHHHHHHHHHH
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQL--WHVGRVSTFGLQPNGKAPISSTNKGVTPG-LDGQ--DWS-SPRPLRTEEIPQIVND 110 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL--~h~G~~~~~~~~~~~~~~~~pS~~~~~~~-~~g~--~~~-~~~~mt~~eI~~ii~~ 110 (193)
-+.+|+++|++|+.|.-|++-. +|.|..++ +.....++....... ..|. .+. ..--....|++. -
T Consensus 213 Pedfk~fVD~aH~~GIgViLD~V~~HF~~d~~------~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~---F 283 (628)
T COG0296 213 PEDFKALVDAAHQAGIGVILDWVPNHFPPDGN------YLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRN---F 283 (628)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCCcCCCCcc------hhhhcCCccccccCCcccccCCCcccchhccCcHHHHH---H
Confidence 3589999999999999999887 45555432 122233333221100 0000 000 011111233332 2
Q ss_pred HH-HHHHHHHHhCCCeEEE-ecchhhHHh
Q 036028 111 FR-LAARNAIEAGDSNSDF-SNLNYMLIF 137 (193)
Q Consensus 111 f~-~AA~~a~~AGfDgVEI-~ahGyLl~q 137 (193)
+. .|.--..+-.+||+=+ +.+..|---
T Consensus 284 ll~nal~Wl~~yHiDGlRvDAV~smly~d 312 (628)
T COG0296 284 LLANALYWLEEYHIDGLRVDAVASMLYLD 312 (628)
T ss_pred HHHHHHHHHHHhCCcceeeehhhhhhccc
Confidence 22 3344568899999999 998876554
No 298
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=27.36 E-value=58 Score=28.44 Aligned_cols=21 Identities=24% Similarity=0.159 Sum_probs=17.3
Q ss_pred HHHHHHHHHhCCCeEEE-ecch
Q 036028 112 RLAARNAIEAGDSNSDF-SNLN 132 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI-~ahG 132 (193)
.+.|+++.++|.|+|.+ ++.|
T Consensus 193 ~~~a~~L~~aGvd~I~Vsg~gG 214 (333)
T TIGR02151 193 KEVAKLLADAGVSAIDVAGAGG 214 (333)
T ss_pred HHHHHHHHHcCCCEEEECCCCC
Confidence 56789999999999999 6433
No 299
>PRK15452 putative protease; Provisional
Probab=27.32 E-value=2.5e+02 Score=25.76 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=17.0
Q ss_pred HhHHHHHHHHHhcCCeEEEc
Q 036028 38 EAWKPIVDAVHQKGGTFFCQ 57 (193)
Q Consensus 38 ~~~~~l~~~vh~~G~~i~~Q 57 (193)
+.+++.++.+|++|.++.+=
T Consensus 46 edl~eav~~ah~~g~kvyvt 65 (443)
T PRK15452 46 ENLALGINEAHALGKKFYVV 65 (443)
T ss_pred HHHHHHHHHHHHcCCEEEEE
Confidence 46888999999999998873
No 300
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=27.29 E-value=3e+02 Score=23.93 Aligned_cols=84 Identities=17% Similarity=0.189 Sum_probs=47.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEec--------chhhH--Hhhc----CCCCCCCCChhhhhhHHHHHHH
Q 036028 96 PRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDFSN--------LNYML--IFSI----KSDVEGRRSYKQRKRLRQDRVE 161 (193)
Q Consensus 96 ~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI~a--------hGyLl--~qFl----Sp~~N~Rts~eNR~Rf~~Eii~ 161 (193)
-+.+|.+++-+-|++-.-+-+ +|||||==..+ |--|+ +-|+ -|++-.-+.-+.---|++|-++
T Consensus 146 r~~~tasql~~~I~~vrsav~---~agy~gpV~T~dsw~~~~~np~l~~~SDfia~N~~aYwd~~~~a~~~~~f~~~q~e 222 (305)
T COG5309 146 RNDLTASQLIEYIDDVRSAVK---EAGYDGPVTTVDSWNVVINNPELCQASDFIAANAHAYWDGQTVANAAGTFLLEQLE 222 (305)
T ss_pred cCCCCHHHHHHHHHHHHHHHH---hcCCCCceeecccceeeeCChHHhhhhhhhhcccchhccccchhhhhhHHHHHHHH
Confidence 357888888877777554433 89999831111 11111 1122 2333333311122247778899
Q ss_pred HHHHhcCCCCCcEEEEcCcCCCC
Q 036028 162 RLHQWQEPPPPPFLFSLPTEWDS 184 (193)
Q Consensus 162 aIR~~vg~~~~~~~~ri~~e~~~ 184 (193)
.|..+||.. .+|.+. -+.|..
T Consensus 223 ~vqsa~g~~-k~~~v~-EtGWPS 243 (305)
T COG5309 223 RVQSACGTK-KTVWVT-ETGWPS 243 (305)
T ss_pred HHHHhcCCC-ccEEEe-eccCCC
Confidence 999999973 666665 455654
No 301
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=27.25 E-value=74 Score=28.35 Aligned_cols=63 Identities=10% Similarity=0.036 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHH-----------HHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHH
Q 036028 98 PLRTEEIPQIVNDFR-----------LAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQ 165 (193)
Q Consensus 98 ~mt~~eI~~ii~~f~-----------~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~ 165 (193)
.++.|++..|-+.++ .-++.|...|||+||+ -+.| .|+ +...=..+.|-+|++
T Consensus 204 ~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a~~tg~~~I~vsnhgg----rql-----------D~g~st~~~L~ei~~ 268 (360)
T COG1304 204 VISKEDGAGISKEWAGPLVLKGILAPEDAAGAGGTGADGIEVSNHGG----RQL-----------DWGISTADSLPEIVE 268 (360)
T ss_pred cccHHHHhHHHHhcCCcHHHhCCCCHHHHHhhccCCceEEEEEcCCC----ccc-----------cCCCChHHHHHHHHH
Confidence 456666665544432 5578888999999999 4444 222 222345667777888
Q ss_pred hcCCCCCcEEE
Q 036028 166 WQEPPPPPFLF 176 (193)
Q Consensus 166 ~vg~~~~~~~~ 176 (193)
++++ ..+|.+
T Consensus 269 av~~-~~~vi~ 278 (360)
T COG1304 269 AVGD-RIEVIA 278 (360)
T ss_pred HhCC-CeEEEe
Confidence 8875 355554
No 302
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=27.08 E-value=73 Score=28.86 Aligned_cols=38 Identities=16% Similarity=0.147 Sum_probs=32.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEecch
Q 036028 95 SPRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDFSNLN 132 (193)
Q Consensus 95 ~~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI~ahG 132 (193)
+|-.+|++||+++++.+.++.....+-+||--+|.+.|
T Consensus 407 p~l~~t~~~id~~~~~l~~~l~~~~~~~~~~~~~~~~~ 444 (445)
T PRK08593 407 PPLVITYEQLDTALNTIEQAFTALEAGKLDQPDISGQG 444 (445)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHhccccCChhhccCC
Confidence 46678999999999999999999998999987774334
No 303
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=26.97 E-value=18 Score=31.45 Aligned_cols=114 Identities=17% Similarity=0.228 Sum_probs=60.1
Q ss_pred HhHHHHHHHHHhcCCeEEEcccCCccccCCCCCC-CCCCcccc-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 036028 38 EAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQP-NGKAPISS-TNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRLAA 115 (193)
Q Consensus 38 ~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~-~~~~~~~p-S~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~AA 115 (193)
+.=+++++.+-+.| +++-++|.+..+..+..+ ...|.++. |..... .+.||.+|.++|+.|.+.
T Consensus 160 ~~G~~vV~~mn~lG--m~vDvSH~s~~t~~Dv~~~s~~PviaSHSn~ral-------~~h~RNltDe~iraia~~----- 225 (320)
T PF01244_consen 160 PFGREVVREMNRLG--MLVDVSHLSEKTFWDVLEISKKPVIASHSNARAL-------CPHPRNLTDEQIRAIAER----- 225 (320)
T ss_dssp HHHHHHHHHHHHHT---EEE-TTB-HHHHHHHHHH-SSEEEECCEEBTTT-------S--TTSB-HHHHHHHHHT-----
T ss_pred hHHHHHHHHHHHcC--CeeeeccCCHHHHHHHHhhcCCCEEEeccChHhh-------CCCCCCCCHHHHHHHHHC-----
Confidence 34567777888888 899999998765433211 12233333 222211 357899999999988653
Q ss_pred HHHHHhCCCeEEEecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEcCcCCCC
Q 036028 116 RNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSLPTEWDS 184 (193)
Q Consensus 116 ~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri~~e~~~ 184 (193)
-|. |-|. +...||++....+.++ .=+++-|+-+.+.+|.+ .|.++ +||.+
T Consensus 226 -----GGv--iGi~----~~~~fl~~~~~~~~~~----~~~~~Hi~y~~~l~G~d--hVgiG--sDfdg 275 (320)
T PF01244_consen 226 -----GGV--IGIN----FYPAFLGDDWDPRASL----DDLVDHIDYIVDLVGID--HVGIG--SDFDG 275 (320)
T ss_dssp -----T-E--EEEE----SSHHHHSTTHSSG-BH----HHHHHHHHHHHHHH-GG--GEEEE----BTT
T ss_pred -----CcE--EEEE----cchhhhcccccccccH----HHHHHHHHHHHHhcCCC--eEEEC--cccCC
Confidence 121 1222 3456666642222233 45777788888889964 56665 56644
No 304
>PRK10785 maltodextrin glucosidase; Provisional
Probab=26.91 E-value=70 Score=30.30 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=24.3
Q ss_pred HHhHHHHHHHHHhcCCeEEEcc--cCCccc
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQL--WHVGRV 64 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL--~h~G~~ 64 (193)
.+.+++|++++|+.|.+|++-+ +|+|..
T Consensus 225 ~~df~~Lv~~aH~rGikVilD~V~NH~~~~ 254 (598)
T PRK10785 225 DAALLRLRHATQQRGMRLVLDGVFNHTGDS 254 (598)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCcCCCC
Confidence 4689999999999999999886 688764
No 305
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=26.90 E-value=2.3e+02 Score=23.64 Aligned_cols=51 Identities=10% Similarity=0.001 Sum_probs=29.9
Q ss_pred HHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 113 LAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
..++.+.+.|.|.||+ .- ++..+ . + ...+.+++..+|+.++.-++.|.+|-
T Consensus 32 ~~~~~~~~~~aD~vElRlD---~l~~~----~----~----~~~~~~~~~~l~~~~~~~PiI~T~R~ 83 (253)
T PRK02412 32 AEALAISKYDADIIEWRAD---FLEKI----S----D----VESVLAAAPAIREKFAGKPLLFTFRT 83 (253)
T ss_pred HHHHHHhhcCCCEEEEEec---hhhcc----C----C----HHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 4455666679999999 65 11111 1 0 12457777888887653234555564
No 306
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=26.79 E-value=1.3e+02 Score=19.87 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=14.6
Q ss_pred CCCCCHHHHHHHHHHH
Q 036028 96 PRPLRTEEIPQIVNDF 111 (193)
Q Consensus 96 ~~~mt~~eI~~ii~~f 111 (193)
..+||+++|+..+..|
T Consensus 13 vd~lsT~dI~~y~~~y 28 (62)
T PF10309_consen 13 VDELSTDDIKAYFSEY 28 (62)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 4689999999999999
No 307
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=26.73 E-value=2.5e+02 Score=24.34 Aligned_cols=59 Identities=14% Similarity=0.103 Sum_probs=30.5
Q ss_pred HHHHHHHHHH-HHHhCCCeEEE-ecchhhHHhhcCCCCCCCC-ChhhhhhHHHHHHHHHHHhcCCC--CCcEEEEc
Q 036028 108 VNDFRLAARN-AIEAGDSNSDF-SNLNYMLIFSIKSDVEGRR-SYKQRKRLRQDRVERLHQWQEPP--PPPFLFSL 178 (193)
Q Consensus 108 i~~f~~AA~~-a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rt-s~eNR~Rf~~Eii~aIR~~vg~~--~~~~~~ri 178 (193)
.+.|++.+.. +++-|||||.| --. |. .+. +.++|..| ...|+.+|++.... .+.+.+-+
T Consensus 97 r~~fi~~iv~~l~~~~~DGidiDwE~---------p~--~~~~~~~d~~~~-~~ll~~lr~~l~~~~~~~~ls~av 160 (362)
T cd02872 97 RKTFIKSAIAFLRKYGFDGLDLDWEY---------PG--QRGGPPEDKENF-VTLLKELREAFEPEAPRLLLTAAV 160 (362)
T ss_pred HHHHHHHHHHHHHHcCCCCeeeeeec---------cc--cCCCCHHHHHHH-HHHHHHHHHHHHhhCcCeEEEEEe
Confidence 3445554444 45689999999 431 11 111 33445444 33555566555432 35555555
No 308
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=26.69 E-value=59 Score=27.37 Aligned_cols=17 Identities=29% Similarity=0.098 Sum_probs=15.9
Q ss_pred HHHHHHHHHhCCCeEEE
Q 036028 112 RLAARNAIEAGDSNSDF 128 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI 128 (193)
.++|..|.+||+|||=+
T Consensus 27 v~aA~~a~~aGAdgITv 43 (239)
T PRK05265 27 VRAALIAEQAGADGITV 43 (239)
T ss_pred HHHHHHHHHcCCCEEEe
Confidence 78999999999999977
No 309
>PLN02433 uroporphyrinogen decarboxylase
Probab=26.63 E-value=2.6e+02 Score=24.26 Aligned_cols=52 Identities=10% Similarity=0.117 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhh-hhhHHHHHHHHHHHhc
Q 036028 107 IVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQ-RKRLRQDRVERLHQWQ 167 (193)
Q Consensus 107 ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eN-R~Rf~~Eii~aIR~~v 167 (193)
+.+.-.+-++...+||.|.|+| =.- +.+|||.. ++. =.-+..+|+++|++..
T Consensus 177 it~~~~~~~~~~ieaGa~~i~i~d~~----~~~lsp~~-----f~ef~~P~~k~i~~~i~~~~ 230 (345)
T PLN02433 177 LTDAVIEYVDYQIDAGAQVVQIFDSW----AGHLSPVD-----FEEFSKPYLEKIVDEVKARH 230 (345)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCc----cccCCHHH-----HHHHHHHHHHHHHHHHHHhC
Confidence 3333344555567899999999 332 22455531 100 0235688999998764
No 310
>PF01084 Ribosomal_S18: Ribosomal protein S18; InterPro: IPR001648 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Evidence suggests that, in prokaryotes, the peptidyl transferase reaction is performed by the large subunit 23S rRNA, whereas proteins probably have a greater role in eukaryotic ribosomes. Most of the proteins lie close to, or on the surface of, the 30S subunit, arranged peripherally around the rRNA []. The small subunit ribosomal proteins can be categorised as primary binding proteins, which bind directly and independently to 16S rRNA; secondary binding proteins, which display no specific affinity for 16S rRNA, but its assembly is contingent upon the presence of one or more primary binding proteins; and tertiary binding proteins, which require the presence of one or more secondary binding proteins and sometimes other tertiary binding proteins. The small ribosomal subunit protein S18 is known to be involved in binding the aminoacyl-tRNA complex in Escherichia coli [], and appears to be situated at the tRNA A-site. Experimental evidence has revealed that S18 is well exposed on the surface of the E. coli ribosome, and is a secondary rRNA binding protein []. S18 belongs to a family of ribosomal proteins [] that includes: eubacterial S18; metazoan mitochondrial S18, algal and plant chloroplast S18; and cyanelle S18.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2UXD_R 3I8G_U 3UZ7_U 1N33_R 2XSY_R 3V24_R 3OGY_R 2XUY_R 2XFZ_R 3UXT_R ....
Probab=26.62 E-value=81 Score=20.14 Aligned_cols=34 Identities=6% Similarity=-0.123 Sum_probs=18.9
Q ss_pred hhHHhhcCCCCCCCC--ChhhhhhHHHHHHHHHHHh
Q 036028 133 YMLIFSIKSDVEGRR--SYKQRKRLRQDRVERLHQW 166 (193)
Q Consensus 133 yLl~qFlSp~~N~Rt--s~eNR~Rf~~Eii~aIR~~ 166 (193)
-||.||+||.-+--. --....+.=+.+..||+.+
T Consensus 13 ~lL~~Fi~~~GkIl~rr~Tgl~~k~Qr~l~~aIkrA 48 (54)
T PF01084_consen 13 ELLSQFISPTGKILPRRITGLCAKQQRKLAKAIKRA 48 (54)
T ss_dssp HHHGCGBTTSSSBSTHHHHTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccceehhhhccccHHHHHHHHHHHHHH
Confidence 389999999433322 1122344555566666653
No 311
>PRK14706 glycogen branching enzyme; Provisional
Probab=26.25 E-value=75 Score=30.53 Aligned_cols=123 Identities=11% Similarity=-0.064 Sum_probs=62.3
Q ss_pred HHhHHHHHHHHHhcCCeEEEcc--cCCccccCCCCCCCCCCcc---ccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQL--WHVGRVSTFGLQPNGKAPI---SSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDF 111 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL--~h~G~~~~~~~~~~~~~~~---~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f 111 (193)
.+.+|+|++++|+.|.++++.+ +|.|+....-..-++.+.. .|....... .+ ...-.....+++ +-.
T Consensus 216 ~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~--w~---~~~~~~~~~eVr---~~l 287 (639)
T PRK14706 216 PEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHFDGGPLYEYADPRKGYHYD--WN---TYIFDYGRNEVV---MFL 287 (639)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhccCCCcceeccCCcCCcCCC--CC---CcccCCCCHHHH---HHH
Confidence 5789999999999999999886 5666542110000111111 010000000 00 000112333333 333
Q ss_pred HHHHHHH-HHhCCCeEEE-ecchhhHHhhc-----CCCCCCCCChhhhhhHHHHHHHHHHHhcC
Q 036028 112 RLAARNA-IEAGDSNSDF-SNLNYMLIFSI-----KSDVEGRRSYKQRKRLRQDRVERLHQWQE 168 (193)
Q Consensus 112 ~~AA~~a-~~AGfDgVEI-~ahGyLl~qFl-----Sp~~N~Rts~eNR~Rf~~Eii~aIR~~vg 168 (193)
..+|+.= .+.++||+=+ +.+.-|--.|- --.+.-|.++ .=..|+.++-+.||+..+
T Consensus 288 ~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~-~a~~fl~~ln~~v~~~~p 350 (639)
T PRK14706 288 IGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENL-EAIAFLKRLNEVTHHMAP 350 (639)
T ss_pred HHHHHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccH-HHHHHHHHHHHHHHHhCC
Confidence 4455444 5799999999 86543322221 1111111122 235699999999988653
No 312
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=26.20 E-value=59 Score=26.11 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=12.5
Q ss_pred HHHHHHHHhCCCeEEE
Q 036028 113 LAARNAIEAGDSNSDF 128 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI 128 (193)
.|-+.|.++|+|+||+
T Consensus 17 ~af~~A~~~Gad~vE~ 32 (220)
T cd08579 17 EALEAAIKAKPDYVEI 32 (220)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 3556677899999995
No 313
>KOG4233 consensus DNA-bridging protein BAF [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=26.18 E-value=19 Score=25.18 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=17.9
Q ss_pred HHHHHHhCCCeEEEecchhhHHhhcCCC
Q 036028 115 ARNAIEAGDSNSDFSNLNYMLIFSIKSD 142 (193)
Q Consensus 115 A~~a~~AGfDgVEI~ahGyLl~qFlSp~ 142 (193)
+.+.+.+|||--.+ |+.|||--.
T Consensus 32 g~~L~~~GfdkAYv-----llGQfLllk 54 (90)
T KOG4233|consen 32 GIKLVDAGFDKAYV-----LLGQFLLLK 54 (90)
T ss_pred hhhHHhccccHHHH-----HHHHHHHhc
Confidence 56788999998655 889998553
No 314
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=26.11 E-value=1.6e+02 Score=25.49 Aligned_cols=19 Identities=26% Similarity=0.141 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCCCeEEE-ec
Q 036028 112 RLAARNAIEAGDSNSDF-SN 130 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI-~a 130 (193)
++.|+.+.++|.|+|=+ +.
T Consensus 146 ~~~A~~a~~~G~D~iv~qG~ 165 (330)
T PF03060_consen 146 VREARKAAKAGADAIVAQGP 165 (330)
T ss_dssp HHHHHHHHHTT-SEEEEE-T
T ss_pred HHHHHHhhhcCCCEEEEecc
Confidence 56788999999999988 63
No 315
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=26.09 E-value=12 Score=32.85 Aligned_cols=48 Identities=15% Similarity=-0.020 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHH
Q 036028 112 RLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVE 161 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~ 161 (193)
-||-....--||+.-|| +..|+.++-++.|.+|. -+.+|-||+++|=.
T Consensus 278 YQADwLlrfYgF~~~Ei~~~g~~~ld~~lDPK~~w--Al~~~d~FPVdvn~ 326 (404)
T COG4277 278 YQADWLLRFYGFSADEILASGGDFLDPDLDPKTAW--ALKHMDRFPVDVNK 326 (404)
T ss_pred HHHHHHHHHhCCCHHHHHhcCCCccCCCCChhhHH--HHhccccccccccc
Confidence 35556667789999999 99999999999998765 44556666666543
No 316
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=26.08 E-value=1.4e+02 Score=25.71 Aligned_cols=56 Identities=13% Similarity=0.119 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhh-hhHHHHHHHHHHHh
Q 036028 104 IPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQR-KRLRQDRVERLHQW 166 (193)
Q Consensus 104 I~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR-~Rf~~Eii~aIR~~ 166 (193)
++.+.+...+-++...++|.|+|.+ -. +--..|+||.. ++.- .....+++++|++.
T Consensus 175 l~~i~~~~~~~~~~~~~~Gad~I~i~dp--~a~~~~lsp~~-----f~e~~~p~~k~i~~~i~~~ 232 (340)
T TIGR01463 175 LELALDFVIAYAKAMVEAGADVIAIADP--FASSDLISPET-----YKEFGLPYQKRLFAYIKEI 232 (340)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecCC--ccCccccCHHH-----HHHHHHHHHHHHHHHHHhc
Confidence 3334455566666677899999999 32 21223555521 2222 24567888888864
No 317
>TIGR03842 F420_CPS_4043 F420-dependent oxidoreductase, CPS_4043 family. This model represents a family of putative F420-dependent oxidoreductases, fairly closely related to 5,10-methylenetetrahydromethanopterin reductase (mer, TIGR03555), both within the bacterial luciferase-like monoxygenase (LLM) family. A fairly deep split (to about 40 % sequence identity) in the present family separates a strictly Actinobacterial clade from an alpha/beta/gamma-proteobacterial clade, in which the member is often the only apparent F420-dependent LLM family member. The specific function, and whether Actinobacterial and Proteobacterial clades differ in function, are unknown.
Probab=26.01 E-value=77 Score=27.36 Aligned_cols=25 Identities=16% Similarity=-0.112 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhCCCeEEE-ecch
Q 036028 108 VNDFRLAARNAIEAGDSNSDF-SNLN 132 (193)
Q Consensus 108 i~~f~~AA~~a~~AGfDgVEI-~ahG 132 (193)
.+...+.|+.|.++|||.|-+ -.|.
T Consensus 12 ~~~~~~~a~~AE~~Gfd~~w~~e~~~ 37 (330)
T TIGR03842 12 ASRVVELARQAERHGFDYVWTFDSHI 37 (330)
T ss_pred HHHHHHHHHHHHHcCCcEEEecCcCc
Confidence 356677799999999999999 6663
No 318
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=25.75 E-value=69 Score=25.87 Aligned_cols=37 Identities=14% Similarity=-0.050 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHh
Q 036028 101 TEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIF 137 (193)
Q Consensus 101 ~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~q 137 (193)
.+||=..-..+..||+..+++|+.-|.. +-||-|-+.
T Consensus 89 vDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~aTHgvfs~~ 126 (184)
T PF14572_consen 89 VDDIIDTGGTLIKAAELLKERGAKKVYACATHGVFSGD 126 (184)
T ss_dssp EEEEESSTHHHHHHHHHHHHTTESEEEEEEEEE---TT
T ss_pred ecccccchHHHHHHHHHHHHcCCCEEEEEEeCcccCch
Confidence 4555566678999999999999999999 999965443
No 319
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=25.55 E-value=3.1e+02 Score=23.06 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEE
Q 036028 112 RLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLF 176 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ 176 (193)
.+-|+...++|+|.|.| +. .+ .++-.+-+..+|++|++.++ .+|.+
T Consensus 28 ~~~A~~~~~~GAdiIDVg~~--------~~--------~~eE~~r~~~~v~~l~~~~~---~plsI 74 (261)
T PRK07535 28 QKLALKQAEAGADYLDVNAG--------TA--------VEEEPETMEWLVETVQEVVD---VPLCI 74 (261)
T ss_pred HHHHHHHHHCCCCEEEECCC--------CC--------chhHHHHHHHHHHHHHHhCC---CCEEE
Confidence 34466667899999999 55 11 12223346667777776652 45544
No 320
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=25.41 E-value=59 Score=21.09 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=11.7
Q ss_pred HHHHHHHhcCCCCCcEE
Q 036028 159 RVERLHQWQEPPPPPFL 175 (193)
Q Consensus 159 ii~aIR~~vg~~~~~~~ 175 (193)
.|++||+++|++ ..+.
T Consensus 1 ri~avr~~~g~~-~~l~ 16 (67)
T PF01188_consen 1 RIRAVREAVGPD-IDLM 16 (67)
T ss_dssp HHHHHHHHHSTT-SEEE
T ss_pred CHHHHHHhhCCC-CeEE
Confidence 478999999973 4443
No 321
>TIGR03854 F420_MSMEG_3544 probable F420-dependent oxidoreductase, MSMEG_3544 family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes a small family, closely related to other such families in the putative F420-binding region, exemplified by MSMEG_3544 in Mycobacterium smegmatis.
Probab=25.37 E-value=85 Score=26.73 Aligned_cols=24 Identities=4% Similarity=-0.060 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhCCCeEEE-ecc
Q 036028 108 VNDFRLAARNAIEAGDSNSDF-SNL 131 (193)
Q Consensus 108 i~~f~~AA~~a~~AGfDgVEI-~ah 131 (193)
.+...+-|+.|.++|||.+-+ -.|
T Consensus 12 ~~~~~~~a~~AE~~Gfd~~w~~eh~ 36 (290)
T TIGR03854 12 PAELPAIVDRLESTGVDSLWLSELV 36 (290)
T ss_pred HHHHHHHHHHHHHhCCCEEEecccc
Confidence 344566788999999999999 444
No 322
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=25.27 E-value=4.3e+02 Score=22.55 Aligned_cols=67 Identities=12% Similarity=0.021 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 102 EEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 102 ~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
+-++.+.+.+.+-++...++|.+.|+| -. .+..++++. ..+-=..++.++++++++. ++ +..+.+=+
T Consensus 148 el~~~la~~~~~e~~~l~~aG~~~iQiDEP---~l~~~~~~~-----~~~~~~~~~~~~~~~l~~~-~~-~~~v~lHi 215 (332)
T cd03311 148 ELAMDLALALREEIRDLYDAGCRYIQIDEP---ALAEGLPLE-----PDDLAADYLKWANEALADR-PD-DTQIHTHI 215 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEeecc---hhhccCCcc-----cHHHHHHHHHHHHHHHHhC-CC-CCEEEEEE
Confidence 445577777888888889999999999 54 333444443 1122245677777777763 22 24455544
No 323
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=25.26 E-value=72 Score=17.90 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=10.3
Q ss_pred HHHHHHHhCCCeEE
Q 036028 114 AARNAIEAGDSNSD 127 (193)
Q Consensus 114 AA~~a~~AGfDgVE 127 (193)
+-+.+..+|.|||-
T Consensus 12 ~~~~~l~~GVDgI~ 25 (30)
T PF13653_consen 12 SWRELLDLGVDGIM 25 (30)
T ss_dssp HHHHHHHHT-SEEE
T ss_pred HHHHHHHcCCCEee
Confidence 44778899999984
No 324
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=25.06 E-value=1.8e+02 Score=27.03 Aligned_cols=22 Identities=14% Similarity=0.069 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCCCeEEE-ecchh
Q 036028 112 RLAARNAIEAGDSNSDF-SNLNY 133 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI-~ahGy 133 (193)
.+-+..+.+||.|.|=| ++||.
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~g~ 272 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQGD 272 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC
Confidence 45567778899999999 99984
No 325
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=25.04 E-value=85 Score=29.24 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=23.8
Q ss_pred HHhHHHHHHHHHhcCCeEEEcc--cCCccc
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQL--WHVGRV 64 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL--~h~G~~ 64 (193)
.+.+++|++++|+.|.++++-+ +|.+..
T Consensus 75 ~~df~~Lv~~ah~~Gi~vilD~V~NH~s~~ 104 (539)
T TIGR02456 75 IDDFKDFVDEAHARGMRVIIDLVLNHTSDQ 104 (539)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccCcCCCC
Confidence 5789999999999999999875 676653
No 326
>cd01095 Nitrilotriacetate_monoxgenase nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin mononucleotide (FMNH2) and oxygen. The FMNH2 is provided by an NADH:flavin mononucleotide (FMN) oxidorductase that uses NADH to reduce FMN to FMNH2.
Probab=25.02 E-value=81 Score=27.85 Aligned_cols=21 Identities=19% Similarity=0.059 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhCCCeEEE
Q 036028 108 VNDFRLAARNAIEAGDSNSDF 128 (193)
Q Consensus 108 i~~f~~AA~~a~~AGfDgVEI 128 (193)
++.+.+.|+.|.++|||++-+
T Consensus 29 ~~~~~~~A~~AE~~GfD~~~~ 49 (358)
T cd01095 29 FDHYVRLARTAERAKFDAVFL 49 (358)
T ss_pred HHHHHHHHHHHHHcCCCEEEe
Confidence 577788899999999999998
No 327
>COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=25.02 E-value=61 Score=26.55 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEE
Q 036028 106 QIVNDFRLAARNAIEAGDSNSDF 128 (193)
Q Consensus 106 ~ii~~f~~AA~~a~~AGfDgVEI 128 (193)
..+..|.. |.++|+|+||+
T Consensus 21 NTl~Af~~----A~~~gad~iE~ 39 (257)
T COG0584 21 NTLAAFEL----AAEQGADYIEL 39 (257)
T ss_pred chHHHHHH----HHHcCCCEEEe
Confidence 34444544 44999999997
No 328
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=24.86 E-value=86 Score=19.64 Aligned_cols=41 Identities=20% Similarity=0.373 Sum_probs=28.4
Q ss_pred ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc----CcCC-CCCccc
Q 036028 148 SYKQRKRLRQDRVERLHQWQEPPPPPFLFSL----PTEW-DSSISL 188 (193)
Q Consensus 148 s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri----~~e~-~~~~~~ 188 (193)
|-|.+.+++.+|-+++.+..|...-.+.+-+ +++| .++-++
T Consensus 12 ~~e~K~~l~~~it~~~~~~lg~~~~~i~V~i~E~~~~~w~~gG~~~ 57 (60)
T PF01361_consen 12 TAEQKRELAEAITDAVVEVLGIPPERISVVIEEVPPENWGIGGKSL 57 (60)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTS-GGGEEEEEEEE-CCCEEETTEET
T ss_pred CHHHHHHHHHHHHHHHHHHhCcCCCeEEEEEEEEChhheEECCEEc
Confidence 6678899999999999999885334466666 5666 444443
No 329
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=24.85 E-value=1.7e+02 Score=27.53 Aligned_cols=67 Identities=21% Similarity=0.294 Sum_probs=46.7
Q ss_pred CCHHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 036028 32 WTKEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDF 111 (193)
Q Consensus 32 ~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f 111 (193)
-+++-|..++.|++.+.++|...++=|.|-.. |.. .... ..| +. -++||++|
T Consensus 127 VN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDl---Pq~------------LeDe--YgG--wL---------n~~ivedF 178 (524)
T KOG0626|consen 127 VNEAGIQFYNNLIDELLANGIEPFVTLFHWDL---PQA------------LEDE--YGG--WL---------NPEIVEDF 178 (524)
T ss_pred cCHHHHHHHHHHHHHHHHcCCeEEEEEecCCC---CHH------------HHHH--hcc--cc---------CHHHHHHH
Confidence 47888999999999999999999999999641 110 0000 011 11 14799999
Q ss_pred HHHHHHHHHhCCCeE
Q 036028 112 RLAARNAIEAGDSNS 126 (193)
Q Consensus 112 ~~AA~~a~~AGfDgV 126 (193)
.+=|..|.+-=-|-|
T Consensus 179 ~~yA~~CF~~fGDrV 193 (524)
T KOG0626|consen 179 RDYADLCFQEFGDRV 193 (524)
T ss_pred HHHHHHHHHHhcccc
Confidence 999999966433444
No 330
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=24.75 E-value=1e+02 Score=25.90 Aligned_cols=27 Identities=26% Similarity=0.198 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEE
Q 036028 102 EEIPQIVNDFRLAARNAIEAGDSNSDF 128 (193)
Q Consensus 102 ~eI~~ii~~f~~AA~~a~~AGfDgVEI 128 (193)
+-++.+.+...+-++...+||.|+|.|
T Consensus 137 ~ll~~i~~~~~~~~~~~~eaG~d~i~i 163 (306)
T cd00465 137 ELIEYLTEFILEYAKTLIEAGAKALQI 163 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 334555566666666778899999999
No 331
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=24.72 E-value=73 Score=30.17 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=22.8
Q ss_pred HHhHHHHHHHHHhcCCeEEEcc--cCCc
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQL--WHVG 62 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL--~h~G 62 (193)
++.+|+|++++|+.|.+|++-+ +|.+
T Consensus 228 ~~efk~lV~~~H~~Gi~VilDvV~NH~~ 255 (605)
T TIGR02104 228 IRELKQMIQALHENGIRVIMDVVYNHTY 255 (605)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEcCCcc
Confidence 5789999999999999999986 5665
No 332
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=24.52 E-value=65 Score=26.44 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=12.8
Q ss_pred HHHHHHHHhCCCeEEE
Q 036028 113 LAARNAIEAGDSNSDF 128 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI 128 (193)
.|-+.|.+.|+|+||+
T Consensus 17 ~af~~A~~~G~d~iE~ 32 (235)
T cd08565 17 EGFRKALELGVDAVEF 32 (235)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 3556678899999997
No 333
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=24.48 E-value=83 Score=26.31 Aligned_cols=17 Identities=41% Similarity=0.325 Sum_probs=15.3
Q ss_pred HHHHHHHHHhCCCeEEE
Q 036028 112 RLAARNAIEAGDSNSDF 128 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI 128 (193)
..|+..|.+||.|.|=-
T Consensus 143 ~~A~~i~~~aGAdFVKT 159 (228)
T COG0274 143 RKACEIAIEAGADFVKT 159 (228)
T ss_pred HHHHHHHHHhCCCEEEc
Confidence 57889999999999987
No 334
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=24.41 E-value=2e+02 Score=22.93 Aligned_cols=48 Identities=17% Similarity=0.157 Sum_probs=29.6
Q ss_pred HHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEE
Q 036028 113 LAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLF 176 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ 176 (193)
..++.|.+.|+|.|++ .--|++.+.. .....+-+.+|++.+.. .++.+
T Consensus 73 ~eve~A~~~GAdevdvv~~~g~~~~~~--------------~~~~~~ei~~v~~~~~g--~~lkv 121 (203)
T cd00959 73 AEAREAIADGADEIDMVINIGALKSGD--------------YEAVYEEIAAVVEACGG--APLKV 121 (203)
T ss_pred HHHHHHHHcCCCEEEEeecHHHHhCCC--------------HHHHHHHHHHHHHhcCC--CeEEE
Confidence 3456688999999999 7766544321 13344456667776652 45444
No 335
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=24.28 E-value=1.5e+02 Score=25.69 Aligned_cols=65 Identities=12% Similarity=0.065 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchh-hHHhhcCCCCCCCC----ChhhhhhHHHHHHHHHHHhcCCCCCcEE
Q 036028 102 EEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNY-MLIFSIKSDVEGRR----SYKQRKRLRQDRVERLHQWQEPPPPPFL 175 (193)
Q Consensus 102 ~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGy-Ll~qFlSp~~N~Rt----s~eNR~Rf~~Eii~aIR~~vg~~~~~~~ 175 (193)
.+=++|+..| -++..+-|||||-| --..| -.. .|.|. ......+|..+|-+.+|++-+ .|.|+
T Consensus 122 ~eWkdii~~~---l~rL~d~GfdGvyLD~VD~y~Y~~------~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~--~~~Vi 190 (300)
T COG2342 122 PEWKDIIRSY---LDRLIDQGFDGVYLDVVDAYWYVE------WNDRETGVNAAKKMVKFIAAIAEYARAANP--LFRVI 190 (300)
T ss_pred HHHHHHHHHH---HHHHHHccCceEEEeeechHHHHH------HhcccccccHHHHHHHHHHHHHHHHHhcCC--cEEEE
Confidence 4556677644 35778899999999 88877 222 23443 334566899999999998754 24444
Q ss_pred EE
Q 036028 176 FS 177 (193)
Q Consensus 176 ~r 177 (193)
.-
T Consensus 191 ~q 192 (300)
T COG2342 191 PQ 192 (300)
T ss_pred ec
Confidence 43
No 336
>COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases [Energy production and conversion]
Probab=24.26 E-value=67 Score=27.44 Aligned_cols=23 Identities=22% Similarity=0.030 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhCCCeEEE-ecch
Q 036028 110 DFRLAARNAIEAGDSNSDF-SNLN 132 (193)
Q Consensus 110 ~f~~AA~~a~~AGfDgVEI-~ahG 132 (193)
.+.+.|+.|.++|||.+-+ -.|+
T Consensus 17 ~~~~la~~AE~~Gfd~~~~~eh~~ 40 (336)
T COG2141 17 YLRDLAQAAERLGFDSVWVAEHHN 40 (336)
T ss_pred HHHHHHHHHHHcCCCEEEcccccc
Confidence 7889999999999999999 7776
No 337
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=24.14 E-value=88 Score=29.17 Aligned_cols=34 Identities=9% Similarity=0.240 Sum_probs=30.2
Q ss_pred HhHHhHHHHHHHHHhcCC-eEEEcccCCccccCCC
Q 036028 35 EQVEAWKPIVDAVHQKGG-TFFCQLWHVGRVSTFG 68 (193)
Q Consensus 35 ~~i~~~~~l~~~vh~~G~-~i~~QL~h~G~~~~~~ 68 (193)
+++..+..+.+.+.++|. ++++|..|.||...|.
T Consensus 124 Sh~~Hl~ali~~a~k~g~~kV~~H~f~DGRD~~P~ 158 (509)
T COG0696 124 SHIDHLLALIELAAKNGMKKVYLHAFLDGRDTAPR 158 (509)
T ss_pred chHHHHHHHHHHHHhcCCcEEEEEEecCCCCCCch
Confidence 568899999999999995 9999999999987765
No 338
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=24.08 E-value=3.9e+02 Score=21.63 Aligned_cols=85 Identities=14% Similarity=0.098 Sum_probs=53.2
Q ss_pred HHhHHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 036028 34 KEQVEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQIVNDFRL 113 (193)
Q Consensus 34 ~~~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~ 113 (193)
+..++...+.++.++++|..+.+.+....+. +.+. +.+.+
T Consensus 111 ~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~---------------------------------~~~~-------~~l~~ 150 (265)
T cd03174 111 EEDLENAEEAIEAAKEAGLEVEGSLEDAFGC---------------------------------KTDP-------EYVLE 150 (265)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEEEeecCC---------------------------------CCCH-------HHHHH
Confidence 4567888899999999998888877543221 1122 23455
Q ss_pred HHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEE
Q 036028 114 AARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFS 177 (193)
Q Consensus 114 AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~r 177 (193)
-++.+.++|.|.|.| ---|+ ++|. -..++++.+|+.+++ .++.+-
T Consensus 151 ~~~~~~~~g~~~i~l~Dt~G~-----~~P~------------~v~~li~~l~~~~~~--~~~~~H 196 (265)
T cd03174 151 VAKALEEAGADEISLKDTVGL-----ATPE------------EVAELVKALREALPD--VPLGLH 196 (265)
T ss_pred HHHHHHHcCCCEEEechhcCC-----cCHH------------HHHHHHHHHHHhCCC--CeEEEE
Confidence 566777888888888 44443 3331 355667777777652 445443
No 339
>PRK13378 protocatechuate 4,5-dioxygenase subunit alpha; Provisional
Probab=24.03 E-value=33 Score=25.69 Aligned_cols=25 Identities=20% Similarity=0.001 Sum_probs=18.4
Q ss_pred cchhhHHhhcCCCCCCCCChhhhhhHHHH
Q 036028 130 NLNYMLIFSIKSDVEGRRSYKQRKRLRQD 158 (193)
Q Consensus 130 ahGyLl~qFlSp~~N~Rts~eNR~Rf~~E 158 (193)
--||-|++|+-.+. +.+||.||.-+
T Consensus 22 rkgY~LN~fc~sl~----~~~nRe~F~ad 46 (117)
T PRK13378 22 RKGYALNKMCFSFN----DAANRAAFLAD 46 (117)
T ss_pred HHHHHHHHHHHHhC----CHHHHHHHHhC
Confidence 34899999997653 36888888753
No 340
>TIGR03857 F420_MSMEG_2249 probable F420-dependent oxidoreductase, MSMEG_2249 family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes a distinctive subfamily, found only in F420-biosynthesizing members of the Actinobacteria of the bacterial luciferase-like monooxygenase (LLM) superfamily.
Probab=24.02 E-value=89 Score=27.14 Aligned_cols=24 Identities=21% Similarity=0.036 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhCCCeEEE-ecch
Q 036028 109 NDFRLAARNAIEAGDSNSDF-SNLN 132 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI-~ahG 132 (193)
++..+.|+.|.++|||.|-+ -.|+
T Consensus 14 ~~~~~~a~~AE~~Gfd~vw~~E~~~ 38 (329)
T TIGR03857 14 AQAIDEARAAERLGFGTVYLSERWN 38 (329)
T ss_pred HHHHHHHHHHHHcCCCEEEecccCC
Confidence 44577799999999999999 6554
No 341
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=23.94 E-value=68 Score=26.20 Aligned_cols=35 Identities=14% Similarity=0.051 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCCeEEE-e---cchhhH---HhhcCCCCCCCC
Q 036028 113 LAARNAIEAGDSNSDF-S---NLNYML---IFSIKSDVEGRR 147 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI-~---ahGyLl---~qFlSp~~N~Rt 147 (193)
.|-+.|.+.|+|+||+ - ..|-++ +..|...+|...
T Consensus 17 ~Af~~A~~~gad~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~ 58 (229)
T cd08581 17 VGFRAAVDAGARFVEFDVQLSADGVPVVFHDDTLLRLTGVEG 58 (229)
T ss_pred HHHHHHHHcCCCEEEEeeeECCCCcEEEECCCccccccCCCc
Confidence 3445667789999998 3 456543 455666666544
No 342
>PRK09505 malS alpha-amylase; Reviewed
Probab=23.93 E-value=99 Score=30.01 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=24.1
Q ss_pred HHhHHHHHHHHHhcCCeEEEcc--cCCccc
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQL--WHVGRV 64 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL--~h~G~~ 64 (193)
.+.|++|++++|++|.++++-+ +|.|+.
T Consensus 291 ~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~ 320 (683)
T PRK09505 291 EADLRTLVDEAHQRGIRILFDVVMNHTGYA 320 (683)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcCCCccc
Confidence 5789999999999999998864 788853
No 343
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=23.80 E-value=1.8e+02 Score=20.34 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchh
Q 036028 97 RPLRTEEIPQIVNDFRLAARNAIEAGDSNSDFSNLNY 133 (193)
Q Consensus 97 ~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI~ahGy 133 (193)
..+|..+++.+++.+.+.-..+...|-. |+|..-|.
T Consensus 15 ~~~s~~~v~~vv~~~~~~i~~~L~~g~~-V~l~gfG~ 50 (96)
T TIGR00987 15 LGLSKREAKELVELFFEEIRRALENGEQ-VKLSGFGN 50 (96)
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHHcCCe-EEecCCEE
Confidence 3579999999999999999999999885 89844443
No 344
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=23.78 E-value=4.3e+02 Score=22.00 Aligned_cols=42 Identities=17% Similarity=0.029 Sum_probs=24.8
Q ss_pred HHHHHHH-HHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCC
Q 036028 110 DFRLAAR-NAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEP 169 (193)
Q Consensus 110 ~f~~AA~-~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~ 169 (193)
.|+.... ..++.|||||.| =-+. . +.+ =..+.++++|+..++
T Consensus 99 ~f~~s~~~~~~~~~~DGiDiDwE~p---------~-----~~~----~~~~ll~~Lr~~~~~ 142 (256)
T cd06546 99 RYYGQLRDMIRRRGLDGLDLDVEEP---------M-----SLD----GIIRLIDRLRSDFGP 142 (256)
T ss_pred HHHHHHHHHHHHhCCCceEEeeecC---------C-----CHh----HHHHHHHHHHHHhCC
Confidence 3444333 346799999999 5542 0 011 235667778887765
No 345
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=23.75 E-value=90 Score=27.16 Aligned_cols=60 Identities=10% Similarity=0.001 Sum_probs=35.8
Q ss_pred HHHHHHHHHHH----HHHHHHHHh-CCCeEEE-ecchhhHHhhcCCCCCCCCChhh-hhhHHHHHHHHHHHh
Q 036028 102 EEIPQIVNDFR----LAARNAIEA-GDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQ-RKRLRQDRVERLHQW 166 (193)
Q Consensus 102 ~eI~~ii~~f~----~AA~~a~~A-GfDgVEI-~ahGyLl~qFlSp~~N~Rts~eN-R~Rf~~Eii~aIR~~ 166 (193)
|.++++++... +-++...++ |.|+|.| =..+.-.+.||||.. +++ =.-..++|++.|++.
T Consensus 144 E~v~~lld~ltd~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~-----f~efv~P~~krIi~~ik~~ 210 (321)
T cd03309 144 EAAHELFDYLTDAKLKLYERRIKHLEPDLLVYHDDLGSQKGSFISPAT-----FREFILPRMQRIFDFLRSN 210 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCccccCCccCHHH-----HHHHHHHHHHHHHHHHHhc
Confidence 45555555544 444444556 9999999 544444446777742 111 023557899999875
No 346
>cd01097 Tetrahydromethanopterin_reductase N5,N10-methylenetetrahydromethanopterin reductase (Mer) catalyzes the reduction of N5,N10-methylenetetrahydromethanopterin with reduced coenzyme F420 to N5-methyltetrahydromethanopterin and oxidized coenzyme F420.
Probab=23.71 E-value=87 Score=24.58 Aligned_cols=18 Identities=33% Similarity=0.112 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhCCCeEEE
Q 036028 111 FRLAARNAIEAGDSNSDF 128 (193)
Q Consensus 111 f~~AA~~a~~AGfDgVEI 128 (193)
...-|+.|.++|||.+.+
T Consensus 17 ~~~~a~~ae~~Gf~~~w~ 34 (202)
T cd01097 17 LVELARAAEEAGFDSVWV 34 (202)
T ss_pred HHHHHHHHHHcCCchhHH
Confidence 345588888899998765
No 347
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=23.67 E-value=1.4e+02 Score=27.39 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=28.4
Q ss_pred CCHHhHHhHHHHHHHHHhcCCeEEEcccCC
Q 036028 32 WTKEQVEAWKPIVDAVHQKGGTFFCQLWHV 61 (193)
Q Consensus 32 ~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~ 61 (193)
.+++-++.+++|.+.+.++|...++=|.|-
T Consensus 87 ~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~ 116 (467)
T TIGR01233 87 VNEKGVEFYHKLFAECHKRHVEPFVTLHHF 116 (467)
T ss_pred cCHHHHHHHHHHHHHHHHcCCEEEEeccCC
Confidence 588999999999999999999999999995
No 348
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=23.60 E-value=1.1e+02 Score=27.69 Aligned_cols=60 Identities=12% Similarity=0.024 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 109 NDFRLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
+.|++.|..+..+|.|.|== -|+ |-+|=++ .++.|.+...|.+++..++.|. .....+-|
T Consensus 159 ~~~a~~~y~~~~GGvD~IKD-DE~-l~~q~~~-------p~~eRv~~~~~a~~~a~~eTG~-~~~y~~Ni 218 (406)
T cd08207 159 EETAALVRQLAAAGIDFIKD-DEL-LANPPYS-------PLDERVRAVMRVINDHAQRTGR-KVMYAFNI 218 (406)
T ss_pred HHHHHHHHHHHhCCCCcccc-ccc-CCCCCCC-------cHHHHHHHHHHHHHHHHHhhCC-cceEEEec
Confidence 34555566666777777621 111 3333333 4689999999999999999997 34555555
No 349
>PRK11702 hypothetical protein; Provisional
Probab=23.57 E-value=72 Score=23.55 Aligned_cols=30 Identities=17% Similarity=0.108 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhCCCe
Q 036028 96 PRPLRTEEIPQIVNDFRLAARNAIEAGDSN 125 (193)
Q Consensus 96 ~~~mt~~eI~~ii~~f~~AA~~a~~AGfDg 125 (193)
+..++.++++.++|+|.+-+..+...+|+|
T Consensus 30 ~~~~~~e~~D~~vD~fIde~Ie~ngL~f~G 59 (108)
T PRK11702 30 PEGTSEEQIDATVDAFIDEVIEPNGLAFDG 59 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCceecC
Confidence 445899999999999998665555455544
No 350
>cd01094 Alkanesulfonate_monoxygenase Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite. Alkanesulfonate monoxygenase (SsuD) has an absolute requirement for reduced flavin mononucleotide (FMNH2), which is provided by the NADPH-dependent FMN oxidoreductase (SsuE).
Probab=23.54 E-value=87 Score=25.64 Aligned_cols=24 Identities=21% Similarity=0.005 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhCCCeEEE-ecc
Q 036028 108 VNDFRLAARNAIEAGDSNSDF-SNL 131 (193)
Q Consensus 108 i~~f~~AA~~a~~AGfDgVEI-~ah 131 (193)
.+.+.+-|+.|.++|||+|-+ -.|
T Consensus 27 ~~~~~~~a~~Ae~~Gfd~~w~~e~~ 51 (244)
T cd01094 27 FEYNRQIAQAAEELGFDGALSPTGS 51 (244)
T ss_pred HHHHHHHHHHHHHCCCCEEEccCCC
Confidence 566777899999999999999 543
No 351
>PF00296 Bac_luciferase: Luciferase-like monooxygenase; InterPro: IPR011251 Bacterial luciferase is a flavin monooxygenase that catalyses the oxidation of long-chain aldehydes and releases energy in the form of visible light, and which uses flavin as a substrate rather than a cofactor []. Bacterial luciferase is an alpha/beta (LuxA/LuxB) heterodimer, where each individual subunit folds into a single TIM (beta/alpha)8-barrel domain. There are structural similarities between bacterial luciferase and nonfluorescent flavoproteins (LuxF, FP390), alkanesulphonate monooxygenase (SsuD), and coenzyme F420-dependent terahydromethanopterin reductase, which make up clearly related families with somewhat different folds [, , ]. More information about these proteins can be found at Protein of the Month: Luciferase [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0055114 oxidation-reduction process; PDB: 2I7G_B 1NFP_A 1TVL_A 1YW1_A 1M41_B 1NQK_A 2B81_A 3RAO_A 1LUC_B 3FGC_B ....
Probab=23.52 E-value=98 Score=25.85 Aligned_cols=27 Identities=19% Similarity=-0.002 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEE-ecch
Q 036028 106 QIVNDFRLAARNAIEAGDSNSDF-SNLN 132 (193)
Q Consensus 106 ~ii~~f~~AA~~a~~AGfDgVEI-~ahG 132 (193)
+..+...+-|+.|.++|||++-+ -.|.
T Consensus 20 ~~~~~~~~~a~~ae~~Gfd~~w~~eh~~ 47 (307)
T PF00296_consen 20 QPLDELVELAQLAEELGFDSVWVSEHHF 47 (307)
T ss_dssp SHHHHHHHHHHHHHHTT-SEEEEE-SSS
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccCC
Confidence 56788889999999999999999 5554
No 352
>PF15059 Speriolin_C: Speriolin C-terminus
Probab=23.39 E-value=3.6e+02 Score=20.96 Aligned_cols=45 Identities=4% Similarity=0.007 Sum_probs=37.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhh
Q 036028 94 SSPRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFS 138 (193)
Q Consensus 94 ~~~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qF 138 (193)
+....++++.-..+.+.|..--.+.+++|+|+=-= +=--||++.|
T Consensus 43 p~~~~~De~~r~~L~~ry~~im~rL~~lGY~~~~HP~lsE~lVN~y 88 (146)
T PF15059_consen 43 PLDGKVDEEKRQTLTQRYVSIMNRLQKLGYNRRVHPGLSEFLVNTY 88 (146)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHcCCCCccCchHHHHHHHHc
Confidence 34567889999999999999999999999998654 5556777777
No 353
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=23.30 E-value=83 Score=25.68 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=14.7
Q ss_pred HHHHHHHHHhCCCeEEEe
Q 036028 112 RLAARNAIEAGDSNSDFS 129 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI~ 129 (193)
.+.|..|.++|+|-|||+
T Consensus 10 ~~~a~~A~~~GAdRiELc 27 (201)
T PF03932_consen 10 LEDALAAEAGGADRIELC 27 (201)
T ss_dssp HHHHHHHHHTT-SEEEEE
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 467889999999999993
No 354
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=23.24 E-value=1.1e+02 Score=19.04 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=19.7
Q ss_pred ChhhhhhHHHHHHHHHHHhcCC
Q 036028 148 SYKQRKRLRQDRVERLHQWQEP 169 (193)
Q Consensus 148 s~eNR~Rf~~Eii~aIR~~vg~ 169 (193)
|.|.+.+|..+|.+++.+.+|-
T Consensus 13 s~eqk~~l~~~it~~l~~~~~~ 34 (61)
T PRK02220 13 TEEQLKALVKDVTAAVSKNTGA 34 (61)
T ss_pred CHHHHHHHHHHHHHHHHHHhCc
Confidence 7788999999999999998873
No 355
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=23.22 E-value=2.4e+02 Score=23.87 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=16.2
Q ss_pred HHHHHHHHHhCCCeEEE-ec
Q 036028 112 RLAARNAIEAGDSNSDF-SN 130 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI-~a 130 (193)
.+.|..|+++|+|-||| .+
T Consensus 11 ~~~a~~A~~~GAdRiELc~~ 30 (248)
T PRK11572 11 MECALTAQQAGADRIELCAA 30 (248)
T ss_pred HHHHHHHHHcCCCEEEEccC
Confidence 35789999999999999 54
No 356
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=23.20 E-value=71 Score=26.98 Aligned_cols=35 Identities=20% Similarity=0.122 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCeEEE-ec---chhhH---HhhcCCCCCCCC
Q 036028 113 LAARNAIEAGDSNSDF-SN---LNYML---IFSIKSDVEGRR 147 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI-~a---hGyLl---~qFlSp~~N~Rt 147 (193)
.|-..|.+.|+|+||+ -- .|-|+ +..|++.+|...
T Consensus 19 ~Af~~A~~~G~d~iE~DV~lTkDg~lVv~HD~~l~R~t~~~g 60 (263)
T cd08580 19 LAISKALANGADAIWLTVQLSKDGVPVLYRPSDLKSLTNGSG 60 (263)
T ss_pred HHHHHHHHcCCCEEEEEeEECCCCCEEEeCCCchhcccCCCC
Confidence 3556678899999997 42 45433 445556666544
No 357
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=23.19 E-value=1e+02 Score=27.30 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Q 036028 95 SPRPLRTEEIPQIVNDFRLAARNA 118 (193)
Q Consensus 95 ~~~~mt~~eI~~ii~~f~~AA~~a 118 (193)
.|.-++.|+++++++.+.++|+++
T Consensus 98 l~eg~~~e~l~~i~~si~e~a~~~ 121 (339)
T COG0309 98 LPEGLPIEDLERILKSIDEEAEEA 121 (339)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHc
Confidence 355689999999999999999886
No 358
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=23.13 E-value=96 Score=26.54 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=27.8
Q ss_pred CHHhHHhHHHHHHHHHhcCCeEEEcccCCc
Q 036028 33 TKEQVEAWKPIVDAVHQKGGTFFCQLWHVG 62 (193)
Q Consensus 33 ~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G 62 (193)
.++.++.-+++++.+|++|..+-+.+.|.|
T Consensus 110 ~~eni~~t~~v~~~a~~~gv~veaE~ghlG 139 (281)
T PRK06806 110 LEENIQKTKEIVELAKQYGATVEAEIGRVG 139 (281)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEeeeEC
Confidence 478899999999999999999999999987
No 359
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=23.11 E-value=1.9e+02 Score=25.88 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHHHHHHHHH-------------------HHHHHhCCCeEEE-ecchh
Q 036028 97 RPLRTEEIPQIVNDFRLAA-------------------RNAIEAGDSNSDF-SNLNY 133 (193)
Q Consensus 97 ~~mt~~eI~~ii~~f~~AA-------------------~~a~~AGfDgVEI-~ahGy 133 (193)
.--|.||+.++|++-.+.. ..+.+||+|.|-| ++.|-
T Consensus 183 di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GG 239 (368)
T PF01645_consen 183 DIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGG 239 (368)
T ss_dssp T-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT--
T ss_pred CcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCC
Confidence 3457888888888766554 3478999999999 88763
No 360
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=23.10 E-value=2e+02 Score=24.53 Aligned_cols=63 Identities=11% Similarity=0.025 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHh-cCCCCCcEEEEc
Q 036028 113 LAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQW-QEPPPPPFLFSL 178 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~-vg~~~~~~~~ri 178 (193)
++=++|.+.|..-||| +=.|-= .=--|...+--.+-... -..+|+++||+. .-..++||++.+
T Consensus 33 ~~y~~aL~~GcRcvElD~wdg~~--~~~eP~V~HG~tlts~i-~f~dv~~aI~~~AF~~s~yPvIlsl 97 (257)
T cd08626 33 EMYRQVLLAGCRCIELDCWDGKG--EDQEPIITHGKAMCTDI-LFKDVIQAIKDTAFVTSDYPVILSF 97 (257)
T ss_pred HHHHHHHHcCCcEEEEEecCCCC--CCCCCEEeeCCCCccCc-CHHHHHHHHHHHhcccCCCCEEEEE
Confidence 3445678899999999 754410 00001111100111122 357999999973 222369999987
No 361
>PLN02960 alpha-amylase
Probab=23.09 E-value=89 Score=31.31 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=24.5
Q ss_pred HHhHHHHHHHHHhcCCeEEEcc--cCCccc
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQL--WHVGRV 64 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL--~h~G~~ 64 (193)
.+.++.|++++|+.|.+|++-+ +|.|..
T Consensus 465 p~dfk~LVd~aH~~GI~VILDvV~NH~~~d 494 (897)
T PLN02960 465 PDDFKRLVDEAHGLGLLVFLDIVHSYAAAD 494 (897)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecccccCCc
Confidence 4689999999999999999998 677764
No 362
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=23.09 E-value=2.5e+02 Score=24.88 Aligned_cols=23 Identities=13% Similarity=0.047 Sum_probs=16.3
Q ss_pred HHHHHHHHHH-HHhCCCeEEE-ecc
Q 036028 109 NDFRLAARNA-IEAGDSNSDF-SNL 131 (193)
Q Consensus 109 ~~f~~AA~~a-~~AGfDgVEI-~ah 131 (193)
++..+.|.|. +++|.|+|=| ++.
T Consensus 113 e~av~nA~rl~~eaGa~aVKlEGg~ 137 (332)
T PLN02424 113 DQAVESAVRMLKEGGMDAVKLEGGS 137 (332)
T ss_pred HHHHHHHHHHHHHhCCcEEEECCCc
Confidence 3444455555 7899999999 873
No 363
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=23.06 E-value=1.8e+02 Score=25.76 Aligned_cols=56 Identities=14% Similarity=0.002 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhC-CCeEEE-ecch--hhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCC
Q 036028 97 RPLRTEEIPQIVNDFRLAARNAIEAG-DSNSDF-SNLN--YMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPP 172 (193)
Q Consensus 97 ~~mt~~eI~~ii~~f~~AA~~a~~AG-fDgVEI-~ahG--yLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~ 172 (193)
.-|+.++| .++|+.|+++| ...+-+ +++| |- +--+.+++++|++..|- ..
T Consensus 82 ~l~~~eeI-------le~Ak~ak~~Ga~r~c~~aagr~~~~~------------------~~~i~~~v~~Vk~~~~l-e~ 135 (335)
T COG0502 82 KLMEVEEI-------LEAAKKAKAAGATRFCMGAAGRGPGRD------------------MEEVVEAIKAVKEELGL-EV 135 (335)
T ss_pred hcCCHHHH-------HHHHHHHHHcCCceEEEEEeccCCCcc------------------HHHHHHHHHHHHHhcCc-HH
Confidence 34555555 67999999999 666666 6653 22 23467888888888763 23
Q ss_pred cEEEEc
Q 036028 173 PFLFSL 178 (193)
Q Consensus 173 ~~~~ri 178 (193)
.+.+++
T Consensus 136 c~slG~ 141 (335)
T COG0502 136 CASLGM 141 (335)
T ss_pred hhccCC
Confidence 344443
No 364
>cd07925 LigA_like_1 The A subunit of Uncharacterized proteins with similarity to Protocatechuate 4,5-dioxygenase (LigAB). The proteins of unknown function in this subfamily are similar to the A subunit of the Protocatechuate (PCA) 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds.
Probab=23.02 E-value=34 Score=25.17 Aligned_cols=24 Identities=21% Similarity=0.019 Sum_probs=17.7
Q ss_pred chhhHHhhcCCCCCCCCChhhhhhHHHH
Q 036028 131 LNYMLIFSIKSDVEGRRSYKQRKRLRQD 158 (193)
Q Consensus 131 hGyLl~qFlSp~~N~Rts~eNR~Rf~~E 158 (193)
-||-|++|+-.+. +.+||-||.-+
T Consensus 12 kgy~LN~fc~sl~----~~~nRe~F~aD 35 (106)
T cd07925 12 KGYALNKMCFSFN----DAANREAFLAD 35 (106)
T ss_pred HhhHHHHHHHHHC----CHHHHHHHHhC
Confidence 5899999996643 36888888753
No 365
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=22.96 E-value=1.3e+02 Score=19.68 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q 036028 103 EIPQIVNDFRLAARNAIEAG 122 (193)
Q Consensus 103 eI~~ii~~f~~AA~~a~~AG 122 (193)
-+++=.+.|..||..|+++|
T Consensus 3 ~L~~R~~~yk~Aa~~AK~~g 22 (59)
T smart00685 3 LLQQRQEQYKQAALQAKRAG 22 (59)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 45666788999999999887
No 366
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=22.91 E-value=1.4e+02 Score=27.38 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=28.7
Q ss_pred CCHHhHHhHHHHHHHHHhcCCeEEEcccCCc
Q 036028 32 WTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG 62 (193)
Q Consensus 32 ~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G 62 (193)
.+.+-++.+++|.+.+.++|...++=|.|-.
T Consensus 88 vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~d 118 (469)
T PRK13511 88 VNPKGVEYYHRLFAECHKRHVEPFVTLHHFD 118 (469)
T ss_pred cCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 5889999999999999999999999999963
No 367
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=22.90 E-value=89 Score=27.12 Aligned_cols=66 Identities=12% Similarity=0.194 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEecchhhHHhhcCCCCCCCC---ChhhhhhHHHHHHHHHHHhcCCCCCcEEEEcCcCC
Q 036028 106 QIVNDFRLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRR---SYKQRKRLRQDRVERLHQWQEPPPPPFLFSLPTEW 182 (193)
Q Consensus 106 ~ii~~f~~AA~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rt---s~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri~~e~ 182 (193)
++|-.|+. +|+.|| |||. |||..=|-.+|.-|. ++- =...++.++..||..+|+. ..|..+.||
T Consensus 5 rfILHYA~---La~~ag--gVda----F~IGSEl~gLT~iR~~~~~fP-aV~~l~~LAa~VR~ilG~~---~kitYAADW 71 (299)
T PF13547_consen 5 RFILHYAH---LAAAAG--GVDA----FCIGSELRGLTRIRDGAGSFP-AVEALRALAADVRAILGPG---TKITYAADW 71 (299)
T ss_pred HHHHHHHH---HHHhcC--CCcE----EEEchhhhhheeecCCCCCCc-HHHHHHHHHHHHHHHhCCC---ceEEEeccC
Confidence 45555544 443433 3444 334444444555554 211 1347889999999999973 444445666
Q ss_pred CC
Q 036028 183 DS 184 (193)
Q Consensus 183 ~~ 184 (193)
.+
T Consensus 72 sE 73 (299)
T PF13547_consen 72 SE 73 (299)
T ss_pred HH
Confidence 44
No 368
>TIGR03860 FMN_nitrolo FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents.
Probab=22.63 E-value=89 Score=28.18 Aligned_cols=25 Identities=20% Similarity=0.089 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhCCCeEEE-ecch
Q 036028 108 VNDFRLAARNAIEAGDSNSDF-SNLN 132 (193)
Q Consensus 108 i~~f~~AA~~a~~AGfDgVEI-~ahG 132 (193)
++.+.+.|+.|.++|||.|-+ -.|+
T Consensus 28 ~~~~~~~A~~AE~~Gfd~~~~~d~~~ 53 (422)
T TIGR03860 28 LDYWTELARTAERGKFDALFFADVLG 53 (422)
T ss_pred HHHHHHHHHHHHHcCCCEEeechhcc
Confidence 577888999999999999999 5443
No 369
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=22.60 E-value=2.4e+02 Score=23.04 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 107 IVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 107 ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
.+..|+.+|. ..|++-|-| .+.|+ ..+ .| .|++++||+.++ .++.++.
T Consensus 135 ~~~~~a~aa~---~~G~~~i~Le~~sGa-----~~~-v~------------~e~i~~Vk~~~~---~Pv~vGG 183 (205)
T TIGR01769 135 IAAAYCLAAK---YFGMKWVYLEAGSGA-----SYP-VN------------PETISLVKKASG---IPLIVGG 183 (205)
T ss_pred HHHHHHHHHH---HcCCCEEEEEcCCCC-----CCC-CC------------HHHHHHHHHhhC---CCEEEeC
Confidence 4677777777 999999999 87775 111 11 789999999884 3444443
No 370
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=22.59 E-value=2.1e+02 Score=24.35 Aligned_cols=61 Identities=11% Similarity=0.052 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHh-cCCCCCcEEEEc
Q 036028 113 LAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQW-QEPPPPPFLFSL 178 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~-vg~~~~~~~~ri 178 (193)
++=.+|.+.|..-||| +=.|-= --|...+=-.+-... ...+|+++||+- .-..++||++.+
T Consensus 33 e~y~~aL~~GcRcvElD~Wdg~~----~eP~V~HG~Tlts~i-~f~dv~~aI~~~AF~~S~yPvIlSl 95 (253)
T cd08632 33 DMYARVLQAGCRCVEVDCWDGPD----GEPVVHHGYTLTSKI-TFRDVIETINKYAFVKNEFPVILSI 95 (253)
T ss_pred HHHHHHHHcCCcEEEEEeecCCC----CCcEEeeCCCCccCc-CHHHHHHHHHHHhccCCCCCEEEEe
Confidence 3445678899999999 765510 001111100122222 457999999983 332369999987
No 371
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=22.54 E-value=1.4e+02 Score=26.96 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=23.8
Q ss_pred hHHhHHHHHHHHHhcCCeEEEcccCCcc
Q 036028 36 QVEAWKPIVDAVHQKGGTFFCQLWHVGR 63 (193)
Q Consensus 36 ~i~~~~~l~~~vh~~G~~i~~QL~h~G~ 63 (193)
.+..++++++.+|++|+.+++--.|+-.
T Consensus 177 ~~~pv~~I~~la~~~ga~v~VDaaq~~~ 204 (405)
T COG0520 177 TVNPVKEIAELAHEHGALVLVDAAQAAG 204 (405)
T ss_pred ccchHHHHHHHHHHcCCEEEEECccccC
Confidence 4567999999999999999998887643
No 372
>TIGR03559 F420_Rv3520c probable F420-dependent oxidoreductase, Rv3520c family. Members of this protein family are predicted to be oxidoreductases dependent on coenzyme F420. The family includes a single member in Mycobacterium tuberculosis (Rv3520c/MT3621) but four in Mycobacterium smegmatis. Prediction that this family is F420-dependent is based primarily on Partial Phylogenetic Profiling vs. F420 biosynthesis.
Probab=22.54 E-value=97 Score=26.76 Aligned_cols=25 Identities=12% Similarity=-0.105 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEE-ecch
Q 036028 108 VNDFRLAARNAIEAGDSNSDF-SNLN 132 (193)
Q Consensus 108 i~~f~~AA~~a~~AGfDgVEI-~ahG 132 (193)
+++..+-|+.|.++|||.|-+ -.++
T Consensus 12 ~~~~~~~a~~AE~~Gfd~~w~~eh~~ 37 (325)
T TIGR03559 12 PRNAVDLVAAAEKAGLDSVWVAEAYG 37 (325)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccccc
Confidence 466677899999999999999 5554
No 373
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=22.48 E-value=2.1e+02 Score=24.40 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCC-CCCChhhhhhHHHHHHHHHHHh-cCCCCCcEEEEc
Q 036028 113 LAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVE-GRRSYKQRKRLRQDRVERLHQW-QEPPPPPFLFSL 178 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N-~Rts~eNR~Rf~~Eii~aIR~~-vg~~~~~~~~ri 178 (193)
++=.+|...|..-||| +=.|-- + -|..- -+| +-... ...+|+++||+. .-..++||++.+
T Consensus 33 e~y~~aL~~GcRcvElD~wdg~~-~---eP~V~HG~t-lts~i-~f~~v~~~I~~~AF~~S~yPvIlsL 95 (258)
T cd08629 33 EAYIRALCKGCRCLELDCWDGPN-Q---EPIIYHGYT-FTSKI-LFCDVLRAIRDYAFKASPYPVILSL 95 (258)
T ss_pred HHHHHHHHhCCcEEEEEeecCCC-C---CcEEeeCCC-CccCc-CHHHHHHHHHHHhccCCCCCEEEEe
Confidence 3445667789999999 755410 0 01110 011 11111 457999999983 333369999987
No 374
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=22.47 E-value=2.3e+02 Score=26.46 Aligned_cols=54 Identities=13% Similarity=0.120 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 107 IVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 107 ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
-.+.|.+-|+.+.++|.|.|-| =--|.| .| .-..++++++|+++++ +.+|.+=.
T Consensus 153 t~e~~~~~a~~l~~~Gad~I~IkDtaGll-----~P------------~~~~~LV~~Lk~~~~~-~ipI~~H~ 207 (499)
T PRK12330 153 TVEGFVEQAKRLLDMGADSICIKDMAALL-----KP------------QPAYDIVKGIKEACGE-DTRINLHC 207 (499)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCccCC-----CH------------HHHHHHHHHHHHhCCC-CCeEEEEe
Confidence 5677888888899999999988 444532 33 2467889999999875 36776654
No 375
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=22.38 E-value=1.2e+02 Score=27.60 Aligned_cols=60 Identities=7% Similarity=0.082 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 109 NDFRLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
+.|++.|..+...|.|.|== -|+ |.+|=++ .+|.|.+...+.+++..++.|. .....+-+
T Consensus 148 ~~~a~~~y~~~~GGiD~IKD-DE~-l~~q~~~-------p~~eRv~~~~~a~~~a~~eTG~-~~~y~~Ni 207 (414)
T cd08206 148 KEYARVVYEALRGGLDFVKD-DEN-QNSQPFM-------RFEDRILFVAEAMDKAEAETGE-AKGHYLNI 207 (414)
T ss_pred HHHHHHHHHHHhcCCccccc-Ccc-CCCCCCC-------cHHHHHHHHHHHHHHHHHhhCC-cceEEecc
Confidence 34566666667778886622 121 3334333 4689999999999999999997 34555555
No 376
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=22.37 E-value=75 Score=26.04 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=12.1
Q ss_pred HHHHHHHHhCCCeEEE
Q 036028 113 LAARNAIEAGDSNSDF 128 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI 128 (193)
.|-..|.++|+|+||+
T Consensus 19 ~Af~~A~~~Gad~vE~ 34 (263)
T cd08567 19 PAFAKALDLGVDTLEL 34 (263)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 3445567799999997
No 377
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=22.31 E-value=1.5e+02 Score=24.12 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCCCeEEE-ecchhhHH
Q 036028 112 RLAARNAIEAGDSNSDF-SNLNYMLI 136 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI-~ahGyLl~ 136 (193)
...++.|.+.|.|.|.+ .-.|++.+
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~ 104 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGS 104 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHT
T ss_pred HHHHHHHHHcCCceeeeecccccccc
Confidence 77889999999999999 87777654
No 378
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=22.09 E-value=2.2e+02 Score=24.96 Aligned_cols=21 Identities=19% Similarity=0.147 Sum_probs=16.8
Q ss_pred HHHHHHHHHhCCCeEEE-ecch
Q 036028 112 RLAARNAIEAGDSNSDF-SNLN 132 (193)
Q Consensus 112 ~~AA~~a~~AGfDgVEI-~ahG 132 (193)
.+.|+.+.+||+|+|-+ ..-|
T Consensus 151 ~e~a~~l~~aGad~i~vg~~~G 172 (326)
T PRK05458 151 PEAVRELENAGADATKVGIGPG 172 (326)
T ss_pred HHHHHHHHHcCcCEEEECCCCC
Confidence 36788999999999988 4444
No 379
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=22.09 E-value=3.3e+02 Score=22.52 Aligned_cols=44 Identities=16% Similarity=0.128 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 113 LAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
+.++++.+.||..+-| .+ +.++ .--++.|++||+.+|++ +.+++
T Consensus 88 ~~~~~~~~~Gf~~~KiKvg---------------~~~~----~~d~~~v~~vr~~~g~~---~~l~v 132 (263)
T cd03320 88 GEAKAAYGGGYRTVKLKVG---------------ATSF----EEDLARLRALREALPAD---AKLRL 132 (263)
T ss_pred HHHHHHHhCCCCEEEEEEC---------------CCCh----HHHHHHHHHHHHHcCCC---CeEEE
Confidence 4456677889999999 65 1111 12367899999999863 45555
No 380
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=22.05 E-value=77 Score=26.60 Aligned_cols=31 Identities=13% Similarity=-0.082 Sum_probs=18.7
Q ss_pred HHHHHHHhCCCeEEE-e---cchhhH---HhhcCCCCC
Q 036028 114 AARNAIEAGDSNSDF-S---NLNYML---IFSIKSDVE 144 (193)
Q Consensus 114 AA~~a~~AGfDgVEI-~---ahGyLl---~qFlSp~~N 144 (193)
|-+.|.+.|+|+||+ - ..|-++ +..|...+|
T Consensus 30 Af~~A~~~Gad~vE~DV~lTkDg~~VV~HD~~l~r~~~ 67 (282)
T cd08605 30 SFIAASKFGADFVEFDVQVTRDGVPVIWHDDFIVVERG 67 (282)
T ss_pred HHHHHHHcCCCEEEEEEEECcCCeEEEECCCceecccC
Confidence 345567799999998 4 345432 334444555
No 381
>TIGR03858 LLM_2I7G probable oxidoreductase, LLM family. This model describes a highly conserved, somewhat broadly distributed family withing the luciferase-like monooxygenase (LLM) superfamily. Most members are from species incapable of synthesizing coenzyme F420, bound by some members of the LLM superfamily. Members, therefore, are more likely to use FMN as a cofactor.
Probab=21.97 E-value=1.2e+02 Score=26.23 Aligned_cols=27 Identities=7% Similarity=-0.064 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEE-ecc
Q 036028 105 PQIVNDFRLAARNAIEAGDSNSDF-SNL 131 (193)
Q Consensus 105 ~~ii~~f~~AA~~a~~AGfDgVEI-~ah 131 (193)
.+..++..+-|++|.++|||.|-+ -.|
T Consensus 22 ~~~~~~~~~~a~~AE~lGfd~~w~~ehh 49 (337)
T TIGR03858 22 AERLRQLVEEIELADQVGLDVFGVGEHH 49 (337)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEecccC
Confidence 577888888999999999999999 454
No 382
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=21.93 E-value=3e+02 Score=25.40 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q 036028 100 RTEEIPQIVNDFRLAARNAIEAGDSNSDF 128 (193)
Q Consensus 100 t~~eI~~ii~~f~~AA~~a~~AGfDgVEI 128 (193)
..++|++.|+.|++.-+.. |+|.-++
T Consensus 144 E~~qI~~~i~~fv~~l~~~---~~d~~~l 169 (451)
T PF04179_consen 144 EHAQIEARIPGFVESLKAL---GLDLESL 169 (451)
T ss_pred HHHHHHHHHHHHHHHHHHh---CCCHHHH
Confidence 3568888999999887766 8887665
No 383
>cd01096 Alkanal_monooxygenase Alkanal monooxygenase are flavin monoxygenases. Molecular oxygen is activated by reaction with reduced flavin mononucleotide (FMNH2) and reacts with an aldehyde to yield the carboxylic acid, oxidized flavin (FMN) and a blue-green light. Bacterial luciferases are heterodimers made of alpha and beta subunits which are homologous. The single activer center is on the alpha subunit. The alpha subunit has a stretch of 30 amino acid residues that is not present in the beta subunit. The beta subunit does not contain the active site and is required for the formation of the fully active heterodimer. The beta subunit does not contribute anything directly to the active site. Its role is probably to stabilize the high quantum yield conformation of the alpha subunit through interactionbs across the subunit interface.
Probab=21.93 E-value=1.2e+02 Score=25.79 Aligned_cols=27 Identities=0% Similarity=-0.125 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEE-ecc
Q 036028 105 PQIVNDFRLAARNAIEAGDSNSDF-SNL 131 (193)
Q Consensus 105 ~~ii~~f~~AA~~a~~AGfDgVEI-~ah 131 (193)
.+.++.-.+.|+.|.+.|||.+-+ -.|
T Consensus 18 ~~~~~~~~~~a~~Ae~lGfd~~w~~Ehh 45 (315)
T cd01096 18 EEVLDRMVDTGVLVDKLNFDTALVLEHH 45 (315)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEecccc
Confidence 467777888899999999999999 454
No 384
>PRK12569 hypothetical protein; Provisional
Probab=21.88 E-value=4.9e+02 Score=21.99 Aligned_cols=94 Identities=14% Similarity=0.086 Sum_probs=64.3
Q ss_pred HHhHHHHHHHHHhcCCeEEEcccCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHH
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQLWHVGRVSTFGLQPNGKAPISSTNKGVTPGLDGQDWSSPRPLRTEEIPQ-IVNDFRLAA 115 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~~~~mt~~eI~~-ii~~f~~AA 115 (193)
-..+++.++.++++|..|.+ |+|. |+. .|+ ....-+||.+|+.. ++.+...-.
T Consensus 46 p~~M~~tv~lA~~~~V~IGA---HPsy---PD~-------------------~gF-GRr~m~~s~~el~~~v~yQigaL~ 99 (245)
T PRK12569 46 PNIMRRTVELAKAHGVGIGA---HPGF---RDL-------------------VGF-GRRHINASPQELVNDVLYQLGALR 99 (245)
T ss_pred HHHHHHHHHHHHHcCCEecc---CCCC---CcC-------------------CCC-CCCCCCCCHHHHHHHHHHHHHHHH
Confidence 35788999999999999887 4331 111 111 12345789999985 556666667
Q ss_pred HHHHHhCCCeEEEecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhc
Q 036028 116 RNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQ 167 (193)
Q Consensus 116 ~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~v 167 (193)
..|+..|..---|--||=|-+.-.. --.+..-|+++|++.-
T Consensus 100 ~~~~~~g~~l~hVKPHGALYN~~~~-----------d~~la~av~~ai~~~~ 140 (245)
T PRK12569 100 EFARAHGVRLQHVKPHGALYMHAAR-----------DEALARLLVEALARLD 140 (245)
T ss_pred HHHHHcCCeeEEecCCHHHHHHHhc-----------CHHHHHHHHHHHHHhC
Confidence 7788888877777778877665442 2257788888888863
No 385
>cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function.
Probab=21.82 E-value=79 Score=25.97 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=12.9
Q ss_pred HHHHHHHHhCCCeEEE
Q 036028 113 LAARNAIEAGDSNSDF 128 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI 128 (193)
.|-+.|.+.|+|+||+
T Consensus 19 ~af~~A~~~g~d~iE~ 34 (240)
T cd08566 19 AAIEAAIDLGADIVEI 34 (240)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 4556678899999998
No 386
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=21.79 E-value=1.3e+02 Score=26.88 Aligned_cols=60 Identities=10% Similarity=-0.029 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 109 NDFRLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
+.|++.|..+...|.|.|== -|+ |-+|=++ -++.|.+...+.+++..++.|. .....+-|
T Consensus 143 ~~~a~~~y~~~~GG~D~IKD-DE~-l~~q~~~-------p~~eRv~~~~~a~~~a~~eTG~-~~~y~~Ni 202 (366)
T cd08148 143 KYTAEAAYAAALGGLDLIKD-DET-LTDQPFC-------PLRDRITEVAAALDRVQEETGE-KKLYAVNV 202 (366)
T ss_pred HHHHHHHHHHHhCCCCcccc-ccc-cCCCCCC-------cHHHHHHHHHHHHHHHHHhhCC-cceEEEEc
Confidence 35666666777788886622 121 3333333 4689999999999999999997 35555555
No 387
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=21.69 E-value=3.1e+02 Score=25.66 Aligned_cols=61 Identities=11% Similarity=0.158 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhH-HhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcE
Q 036028 97 RPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYML-IFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPF 174 (193)
Q Consensus 97 ~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl-~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~ 174 (193)
..|+.+|+-.|.+ ...++||+-||+ ++.-|=- -.|++.- +.|-++++|+.+....+..
T Consensus 22 tr~~t~d~l~ia~-------~ld~~G~~siE~~GGatfd~~~rfl~Ed-------------pwerlr~lr~~~~nt~lqm 81 (499)
T PRK12330 22 TRMAMEDMVGACE-------DIDNAGYWSVECWGGATFDACIRFLNED-------------PWERLRTFRKLMPNSRLQM 81 (499)
T ss_pred ccCCHHHHHHHHH-------HHHhcCCCEEEecCCcchhhhhcccCCC-------------HHHHHHHHHHhCCCCeEEE
Confidence 5678888776544 445599999999 7655432 3444331 3455666666665433444
Q ss_pred EEE
Q 036028 175 LFS 177 (193)
Q Consensus 175 ~~r 177 (193)
.+|
T Consensus 82 L~R 84 (499)
T PRK12330 82 LLR 84 (499)
T ss_pred EEc
Confidence 444
No 388
>PRK14847 hypothetical protein; Provisional
Probab=21.56 E-value=4.6e+02 Score=23.12 Aligned_cols=49 Identities=8% Similarity=0.077 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhCCC------eEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCC
Q 036028 105 PQIVNDFRLAARNAIEAGDS------NSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEP 169 (193)
Q Consensus 105 ~~ii~~f~~AA~~a~~AGfD------gVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~ 169 (193)
+++++.-.++.+.|++.|.| -|++ +-.. .|+++ -|+.|+++++.+..|.
T Consensus 147 ~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDa------------sRad~----dfL~~~~~~a~~~~ga 202 (333)
T PRK14847 147 AEIKEIALAGTRQIRALADANPGTQWIYEYSPETF------------SLAEL----DFAREVCDAVSAIWGP 202 (333)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCceEEEEeeecC------------CCCCH----HHHHHHHHHHHHHhCC
Confidence 34566667788888888774 3677 4332 25544 3888888888777664
No 389
>TIGR02368 dimeth_PyL dimethylamine:corrinoid methyltransferase. This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of M. acetivorans, M. barkeri, and M. Mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.
Probab=21.55 E-value=87 Score=26.94 Aligned_cols=48 Identities=13% Similarity=0.103 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHH-hCCCeEEE-ecc--hhhHHhhc-CCCCCCCC--ChhhhhhHH
Q 036028 109 NDFRLAARNAIE-AGDSNSDF-SNL--NYMLIFSI-KSDVEGRR--SYKQRKRLR 156 (193)
Q Consensus 109 ~~f~~AA~~a~~-AGfDgVEI-~ah--GyLl~qFl-Sp~~N~Rt--s~eNR~Rf~ 156 (193)
+.--+|.+-..+ ||.|||.| .+. |.-++..+ |..+.-|. ++-.|+.|-
T Consensus 337 davtraskamvevagvdgi~igvgdplgmpishimasgmtgiraagdlvarmqfs 391 (466)
T TIGR02368 337 DAVTRASKAMVEVAGVDGIOIGVGDPLGMPISHIMASGMTGIRAAGDLVARMQFS 391 (466)
T ss_pred HHHHHHhhhhheeccccceeeccCCccCCcHHHHHhcccccchhhhhHHHHhhhc
Confidence 333445555544 99999999 553 66666655 66677777 666666664
No 390
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=21.35 E-value=86 Score=23.89 Aligned_cols=54 Identities=22% Similarity=0.242 Sum_probs=34.0
Q ss_pred HHHHHHHHhCCCeEEE-ecc---h--------hhHHhhcCCCCCCCC-Chhhh-----hhHHHHHHHHHHHh
Q 036028 113 LAARNAIEAGDSNSDF-SNL---N--------YMLIFSIKSDVEGRR-SYKQR-----KRLRQDRVERLHQW 166 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI-~ah---G--------yLl~qFlSp~~N~Rt-s~eNR-----~Rf~~Eii~aIR~~ 166 (193)
.|-+.|.+.|+|+||+ -.- | ..|+++|.-.-+... .+|-. ..++..+++.+++.
T Consensus 17 ~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hdi~tL~e~l~~~~~~~~i~leiK~~~~~~~~~~~l~~~i~~~ 88 (189)
T cd08556 17 AAFRKALEAGADGVELDVQLTKDGVLVVIHDIPTLEEVLELVKGGVGLNIELKEPTRYPGLEAKVAELLREY 88 (189)
T ss_pred HHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCCCHHHHHHhcccCcEEEEEECCCCCchhHHHHHHHHHHHc
Confidence 3445677889999999 543 2 567888877655333 22221 24666777777765
No 391
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=21.34 E-value=1.2e+02 Score=26.02 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=27.9
Q ss_pred CHHhHHhHHHHHHHHHhcCCeEEEcccCCc
Q 036028 33 TKEQVEAWKPIVDAVHQKGGTFFCQLWHVG 62 (193)
Q Consensus 33 ~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G 62 (193)
-++.+..-|++++.+|.+|..+=+.|.|-|
T Consensus 110 ~eeNi~~T~~vv~~Ah~~gvsVEaElG~ig 139 (284)
T PRK12737 110 FEENIAIVKEVVEFCHRYDASVEAELGRLG 139 (284)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEEeecc
Confidence 378999999999999999999999999986
No 392
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=21.28 E-value=1.6e+02 Score=24.07 Aligned_cols=57 Identities=11% Similarity=0.106 Sum_probs=39.3
Q ss_pred EEE--ecchh---hHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc-CcCC
Q 036028 126 SDF--SNLNY---MLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL-PTEW 182 (193)
Q Consensus 126 VEI--~ahGy---Ll~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri-~~e~ 182 (193)
+++ +|||| +.-..|...++.=-+.|.-..+...++.+++++.--+...|.++| ..|.
T Consensus 125 ~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~El~kRlvin~~~f~v~IVdkdG 187 (200)
T KOG0177|consen 125 VSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLMKKCVLELKKRLVINLPGFIVKIVDKDG 187 (200)
T ss_pred ccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcccCCCCcEEEEEcCCC
Confidence 556 78987 333444444422118888899999999999998654456799999 5554
No 393
>TIGR03856 F420_MSMEG_2906 probable F420-dependent oxidoreductase, MSMEG_2906 family. This model describes a small family of enzymes in the bacterial luciferase-like monooxygenase family, which includes F420-dependent enzymes such as N5,N10-methylenetetrahydromethanopterin reductase as well as FMN-dependent enzymes. All members of this family are from species that produce coenzyme F420; SIMBAL analysis suggests that members of this family bind F420 rather than FMN.
Probab=21.27 E-value=1.2e+02 Score=25.34 Aligned_cols=20 Identities=25% Similarity=0.101 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhCCCeEEE
Q 036028 109 NDFRLAARNAIEAGDSNSDF 128 (193)
Q Consensus 109 ~~f~~AA~~a~~AGfDgVEI 128 (193)
+...+.|+.|.++|||.|-+
T Consensus 16 ~~~~~~a~~AE~~Gfd~vw~ 35 (249)
T TIGR03856 16 RTWRDAVRRAEDLGVDVIFN 35 (249)
T ss_pred HHHHHHHHHHHHcCCCEEEE
Confidence 34455788999999999999
No 394
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=21.09 E-value=2.3e+02 Score=23.64 Aligned_cols=61 Identities=13% Similarity=0.080 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHh-cCCCCCcEEEEc
Q 036028 113 LAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQW-QEPPPPPFLFSL 178 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~-vg~~~~~~~~ri 178 (193)
++=.+|...|...||| +=.|-= + -|...+=-++-... -..+|+++||+. .-..++||++.+
T Consensus 33 e~Y~~aL~~GcRcvElD~wdg~~-~---ePvV~HG~tlts~i-~f~dv~~aI~~~AF~~s~yPvIlSl 95 (227)
T cd08594 33 DMYARVLQAGCRCVEVDCWDGPD-G---EPVVHHGYTLTSKI-LFRDVIETINKYAFIKNEYPVILSI 95 (227)
T ss_pred HHHHHHHHhCCcEEEEEeecCCC-C---CcEEeeCCCcccCc-CHHHHHHHHHHhhccCCCCCEEEEe
Confidence 3445677889999999 755410 0 01111100111111 357999999983 322369999987
No 395
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=20.97 E-value=1.6e+02 Score=20.22 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=18.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q 036028 96 PRPLRTEEIPQIVNDFRLAARNA 118 (193)
Q Consensus 96 ~~~mt~~eI~~ii~~f~~AA~~a 118 (193)
+..++.++++++++.+.++++..
T Consensus 65 ~~~~~~~~l~~~~~Gi~~~~~~~ 87 (96)
T PF00586_consen 65 PNPESPEELKEIVKGIAEACREF 87 (96)
T ss_dssp STTSBHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHh
Confidence 34567889999999999988765
No 396
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=20.96 E-value=2.6e+02 Score=22.86 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=31.3
Q ss_pred HHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEE
Q 036028 114 AARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLF 176 (193)
Q Consensus 114 AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ 176 (193)
-++.|.++|+|-|++ .-.|+|.+ . ......+-+.+|++.++. .++-+
T Consensus 75 E~~~Av~~GAdEiDvv~n~g~l~~----g----------~~~~v~~ei~~i~~~~~g--~~lKv 122 (211)
T TIGR00126 75 ETKEAIKYGADEVDMVINIGALKD----G----------NEEVVYDDIRAVVEACAG--VLLKV 122 (211)
T ss_pred HHHHHHHcCCCEEEeecchHhhhC----C----------cHHHHHHHHHHHHHHcCC--CeEEE
Confidence 346689999999999 77676542 2 234556667778877752 45444
No 397
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=20.87 E-value=89 Score=24.77 Aligned_cols=15 Identities=40% Similarity=0.521 Sum_probs=11.7
Q ss_pred HHHHHHHhCCCeEEE
Q 036028 114 AARNAIEAGDSNSDF 128 (193)
Q Consensus 114 AA~~a~~AGfDgVEI 128 (193)
|=..|.+.|+|+||+
T Consensus 15 af~~A~~~G~~~iE~ 29 (256)
T PF03009_consen 15 AFRAAIELGADGIEL 29 (256)
T ss_dssp HHHHHHHTTSSEEEE
T ss_pred HHHHHHHhCCCeEcc
Confidence 334568899999997
No 398
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=20.86 E-value=4.5e+02 Score=22.91 Aligned_cols=65 Identities=15% Similarity=0.055 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhCCCeEEE-ec-chhhHHhhcCCCC-CCCC--ChhhhhhHHHHHHHHHHHhcCCCCCc-EEEE
Q 036028 110 DFRLAARNAIEAGDSNSDF-SN-LNYMLIFSIKSDV-EGRR--SYKQRKRLRQDRVERLHQWQEPPPPP-FLFS 177 (193)
Q Consensus 110 ~f~~AA~~a~~AGfDgVEI-~a-hGyLl~qFlSp~~-N~Rt--s~eNR~Rf~~Eii~aIR~~vg~~~~~-~~~r 177 (193)
+...-|+.|.++|+|||=+ -- -+.-+ +.+|.. |..- |=..-....++.+..+++.++.+ ++ +.++
T Consensus 225 ~i~~ia~~~~~~GadGi~l~NT~~~~~~--~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~-ipiig~G 295 (335)
T TIGR01036 225 DLEDIADSLVELGIDGVIATNTTVSRSL--VQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGR-LPIIGVG 295 (335)
T ss_pred HHHHHHHHHHHhCCcEEEEECCCCcccc--ccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCC-CCEEEEC
Confidence 4566777888999999977 21 11100 122221 1222 33333456788889998888642 44 4344
No 399
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=20.83 E-value=2.2e+02 Score=23.71 Aligned_cols=59 Identities=15% Similarity=0.163 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEE
Q 036028 98 PLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLF 176 (193)
Q Consensus 98 ~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ 176 (193)
+++.+.++++++... +.|.|||-+ |--| +|.+= |.|.|.+++..+++++. . ..+|.+
T Consensus 14 ~iD~~~~~~~i~~l~-------~~Gv~gi~~~GstG----E~~~l------s~~Er~~l~~~~~~~~~----~-~~~vi~ 71 (281)
T cd00408 14 EVDLDALRRLVEFLI-------EAGVDGLVVLGTTG----EAPTL------TDEERKEVIEAVVEAVA----G-RVPVIA 71 (281)
T ss_pred CcCHHHHHHHHHHHH-------HcCCCEEEECCCCc----ccccC------CHHHHHHHHHHHHHHhC----C-CCeEEE
Confidence 567777777766554 469999988 6544 11111 56788888777777653 3 367888
Q ss_pred Ec
Q 036028 177 SL 178 (193)
Q Consensus 177 ri 178 (193)
.+
T Consensus 72 gv 73 (281)
T cd00408 72 GV 73 (281)
T ss_pred ec
Confidence 87
No 400
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=20.78 E-value=87 Score=25.44 Aligned_cols=56 Identities=18% Similarity=0.141 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCCeEEE-ec---chhhH---HhhcCCCCCCC-C-----Chhh------------hhhHHHHHHHHHHHhc
Q 036028 113 LAARNAIEAGDSNSDF-SN---LNYML---IFSIKSDVEGR-R-----SYKQ------------RKRLRQDRVERLHQWQ 167 (193)
Q Consensus 113 ~AA~~a~~AGfDgVEI-~a---hGyLl---~qFlSp~~N~R-t-----s~eN------------R~Rf~~Eii~aIR~~v 167 (193)
.|-..|.++|+|+||+ -. .|-++ +.-|...+|.. . +++. +.=-+-|+++.++...
T Consensus 17 ~af~~a~~~g~d~vE~Dv~lTkDg~~vv~HD~~l~R~t~~~~~~v~~~t~~eL~~l~~~~~~~~~iptL~evl~~~~~~~ 96 (234)
T cd08570 17 LAFEKAVEAGADAIETDVHLTKDGVVVISHDPNLKRCFGKDGLIIDDSTWDELSHLRTIEEPHQPMPTLKDVLEWLVEHE 96 (234)
T ss_pred HHHHHHHHhCCCEEEEEeeEccCCcEEEeCCCccceeeCCCCCEeccCCHHHHhhcccccCCCccCCcHHHHHHHHHhcC
Confidence 3445667799999998 43 45432 33444555544 1 1211 2334578888777653
Q ss_pred C
Q 036028 168 E 168 (193)
Q Consensus 168 g 168 (193)
+
T Consensus 97 ~ 97 (234)
T cd08570 97 L 97 (234)
T ss_pred C
Confidence 3
No 401
>COG1850 RbcL Ribulose 1,5-bisphosphate carboxylase, large subunit [Carbohydrate transport and metabolism]
Probab=20.74 E-value=2.2e+02 Score=25.93 Aligned_cols=54 Identities=6% Similarity=-0.023 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCC
Q 036028 107 IVNDFRLAARNAIEAGDSNSDFSNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEP 169 (193)
Q Consensus 107 ii~~f~~AA~~a~~AGfDgVEI~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~ 169 (193)
-.+.|+..|-.+...|.|.|-= . ..|.||-+|+ +|.|..+..++++..-++.|.
T Consensus 169 ~~e~~a~~~yE~~~GGvD~iKD--D----Enl~s~~f~~---~e~R~~~~m~~i~~aeaeTGe 222 (429)
T COG1850 169 SPEEYAELAYELLSGGVDFIKD--D----ENLTSPPFNR---FEERVAKIMEAIDKAEAETGE 222 (429)
T ss_pred CHHHHHHHHHHHHhcCcceecc--h----hhccCccccc---HHHHHHHHHHHHHHHHHhhCc
Confidence 3456677777888888886632 1 2466777777 899999999999999998886
No 402
>TIGR03356 BGL beta-galactosidase.
Probab=20.71 E-value=1.6e+02 Score=26.71 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=29.2
Q ss_pred CCCHHhHHhHHHHHHHHHhcCCeEEEcccCCc
Q 036028 31 IWTKEQVEAWKPIVDAVHQKGGTFFCQLWHVG 62 (193)
Q Consensus 31 i~~~~~i~~~~~l~~~vh~~G~~i~~QL~h~G 62 (193)
-++++.+..+.++.+.++++|...++=|.|..
T Consensus 87 ~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd 118 (427)
T TIGR03356 87 PVNPKGLDFYDRLVDELLEAGIEPFVTLYHWD 118 (427)
T ss_pred CcCHHHHHHHHHHHHHHHHcCCeeEEeeccCC
Confidence 36888999999999999999999999999964
No 403
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=20.66 E-value=3.6e+02 Score=23.19 Aligned_cols=47 Identities=9% Similarity=0.001 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 110 DFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 110 ~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
+..+.|++.++.||..+-| .+.. ++ .--++.|++||+++|++ +.+|+
T Consensus 121 ~~~~~a~~~~~~G~~~~KvKvG~~---------------~~----~~d~~~v~air~~~g~~---~~l~v 168 (320)
T PRK02714 121 AALQQWQTLWQQGYRTFKWKIGVD---------------PL----EQELKIFEQLLERLPAG---AKLRL 168 (320)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCC---------------Ch----HHHHHHHHHHHHhcCCC---CEEEE
Confidence 3455667777889999999 6421 11 12367889999999873 55565
No 404
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=20.66 E-value=1.3e+02 Score=23.58 Aligned_cols=23 Identities=13% Similarity=0.007 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCCeEEE-ecch
Q 036028 110 DFRLAARNAIEAGDSNSDF-SNLN 132 (193)
Q Consensus 110 ~f~~AA~~a~~AGfDgVEI-~ahG 132 (193)
.|.++++.+.++|.|.|++ ...|
T Consensus 13 ~~~~~~~~~~~~G~~~i~l~~~d~ 36 (211)
T cd00429 13 NLGEELKRLEEAGADWIHIDVMDG 36 (211)
T ss_pred HHHHHHHHHHHcCCCEEEEecccC
Confidence 3667888999999999999 7665
No 405
>TIGR03555 F420_mer 5,10-methylenetetrahydromethanopterin reductase. Members of this protein family are 5,10-methylenetetrahydromethanopterin reductase, an F420-dependent enzyme of methanogenesis. It is restricted to the Archaea.
Probab=20.62 E-value=1.1e+02 Score=26.18 Aligned_cols=24 Identities=8% Similarity=0.054 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEE-ecc
Q 036028 108 VNDFRLAARNAIEAGDSNSDF-SNL 131 (193)
Q Consensus 108 i~~f~~AA~~a~~AGfDgVEI-~ah 131 (193)
+++..+.|+.|.++|||.|-+ -.|
T Consensus 11 ~~~~~~~a~~AE~~Gfd~~w~~eh~ 35 (325)
T TIGR03555 11 ITKIAYYVKLAEDNGFEYAWITDHY 35 (325)
T ss_pred HHHHHHHHHHHHHcCCCEEEecccc
Confidence 456677789999999999999 544
No 406
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=20.50 E-value=1.7e+02 Score=20.24 Aligned_cols=37 Identities=14% Similarity=0.298 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhh
Q 036028 97 RPLRTEEIPQIVNDFRLAARNAIEAGDSNSDFSNLNYM 134 (193)
Q Consensus 97 ~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI~ahGyL 134 (193)
..+|..+++.+++.|.+....+.+.|-. |+|..-|.+
T Consensus 15 ~~~s~~~~~~vv~~~~~~i~~~L~~g~~-V~l~gfG~F 51 (94)
T PRK00199 15 PHLSAKDVENAVKEILEEMSDALARGDR-IEIRGFGSF 51 (94)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCe-EEEcCCEEE
Confidence 3689999999999999999999998864 888444443
No 407
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=20.43 E-value=1.2e+02 Score=27.83 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHH-HHhCCCeEEE
Q 036028 98 PLRTEEIPQIVNDFRLAARNA-IEAGDSNSDF 128 (193)
Q Consensus 98 ~mt~~eI~~ii~~f~~AA~~a-~~AGfDgVEI 128 (193)
.|+.+ +.-++.|+..|... ++-+||||.|
T Consensus 144 ~~aad--~a~re~Fa~saVe~~r~~~FDGVDI 173 (441)
T COG3325 144 DMAAD--DASRENFAKSAVEFMRTYGFDGVDI 173 (441)
T ss_pred hhhcC--HHHHHHHHHHHHHHHHhcCCCceee
Confidence 44444 67889999999887 5599999999
No 408
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=20.36 E-value=2.4e+02 Score=23.74 Aligned_cols=60 Identities=10% Similarity=0.099 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEE
Q 036028 97 RPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFL 175 (193)
Q Consensus 97 ~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~ 175 (193)
.+++.+.++++++.+. ++|.|||-+ |--|-. ..| |.|.|.+++..++++++. ..+|.
T Consensus 14 g~iD~~~~~~~i~~l~-------~~Gv~Gi~~~GstGE~--~~L--------s~~Er~~~~~~~~~~~~~-----~~~vi 71 (285)
T TIGR00674 14 GSVDFAALEKLIDFQI-------ENGTDAIVVVGTTGES--PTL--------SHEEHKKVIEFVVDLVNG-----RVPVI 71 (285)
T ss_pred CCcCHHHHHHHHHHHH-------HcCCCEEEECccCccc--ccC--------CHHHHHHHHHHHHHHhCC-----CCeEE
Confidence 3677777777776554 689999999 765521 111 567898888777776542 36777
Q ss_pred EEc
Q 036028 176 FSL 178 (193)
Q Consensus 176 ~ri 178 (193)
+.+
T Consensus 72 ~gv 74 (285)
T TIGR00674 72 AGT 74 (285)
T ss_pred EeC
Confidence 777
No 409
>PRK10508 hypothetical protein; Provisional
Probab=20.31 E-value=1.4e+02 Score=25.99 Aligned_cols=28 Identities=18% Similarity=-0.025 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEE-ecch
Q 036028 105 PQIVNDFRLAARNAIEAGDSNSDF-SNLN 132 (193)
Q Consensus 105 ~~ii~~f~~AA~~a~~AGfDgVEI-~ahG 132 (193)
.+.+++..+-|+.|.+.|||.+-+ -.|+
T Consensus 23 ~~a~~~~~~~a~~ae~lG~~~~w~~Ehh~ 51 (333)
T PRK10508 23 REAFSHSLDLARLAEKRGYHRYWLAEHHN 51 (333)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeeccCC
Confidence 578889999999999999999999 5553
No 410
>PLN03244 alpha-amylase; Provisional
Probab=20.30 E-value=1e+02 Score=30.66 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=23.3
Q ss_pred HHhHHHHHHHHHhcCCeEEEcccC--Cccc
Q 036028 37 VEAWKPIVDAVHQKGGTFFCQLWH--VGRV 64 (193)
Q Consensus 37 i~~~~~l~~~vh~~G~~i~~QL~h--~G~~ 64 (193)
.+.||+|+|++|+.|..+++.+.| .+..
T Consensus 440 PeDLK~LVD~aH~~GI~VILDvV~NH~~~d 469 (872)
T PLN03244 440 PDDFKRLVDEAHGLGLLVFLDIVHSYAAAD 469 (872)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCccCCCc
Confidence 457999999999999999999865 4543
No 411
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=20.30 E-value=81 Score=27.43 Aligned_cols=15 Identities=20% Similarity=0.259 Sum_probs=11.8
Q ss_pred HHHHHHHhCCCeEEE
Q 036028 114 AARNAIEAGDSNSDF 128 (193)
Q Consensus 114 AA~~a~~AGfDgVEI 128 (193)
|-+.|.++|+|+||+
T Consensus 46 AF~~Ai~~GaD~IE~ 60 (315)
T cd08609 46 SLRKSLECGVVVFET 60 (315)
T ss_pred HHHHHHHcCCCEEEE
Confidence 445677899999995
No 412
>TIGR03621 F420_MSMEG_2516 probable F420-dependent oxidoreductase, MSMEG_2516 family. Coenzyme F420 is produced by methanogenic archaea, a number of the Actinomycetes (including Mycobacterium tuberculosis), and rare members of other lineages. The resulting information-rich phylogenetic profile identifies candidate F420-dependent oxidoreductases within the family of luciferase-like enzymes (pfam00296), where the species range for the subfamily encompasses many F420-positive genomes without straying beyond. This family is uncharacterized, and named for member MSMEG_2516 from Mycobacterium smegmatis.
Probab=20.24 E-value=1.2e+02 Score=25.89 Aligned_cols=24 Identities=29% Similarity=0.227 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEE-ecc
Q 036028 108 VNDFRLAARNAIEAGDSNSDF-SNL 131 (193)
Q Consensus 108 i~~f~~AA~~a~~AGfDgVEI-~ah 131 (193)
.+...+.|+.|.++|||.|-+ -.|
T Consensus 13 ~~~~~~~a~~AE~~Gfd~~~~~eh~ 37 (295)
T TIGR03621 13 ARDLVDLARRAEDAGFDVLTVPDHL 37 (295)
T ss_pred HHHHHHHHHHHHHcCCCEEEecccC
Confidence 467788899999999999999 544
No 413
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=20.20 E-value=3.8e+02 Score=22.21 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=19.3
Q ss_pred hHHhHHHHHHHHHhcCCeEEEcccCC
Q 036028 36 QVEAWKPIVDAVHQKGGTFFCQLWHV 61 (193)
Q Consensus 36 ~i~~~~~l~~~vh~~G~~i~~QL~h~ 61 (193)
..+..++.++.+|+.|..+.+++..+
T Consensus 110 ~~~~~~~~i~~ak~~G~~v~~~~~~~ 135 (263)
T cd07943 110 EADVSEQHIGAARKLGMDVVGFLMMS 135 (263)
T ss_pred hHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 45567888888888888777777544
No 414
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=20.18 E-value=2.1e+02 Score=24.09 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhCCCeEEE
Q 036028 110 DFRLAARNAIEAGDSNSDF 128 (193)
Q Consensus 110 ~f~~AA~~a~~AGfDgVEI 128 (193)
.|+++..+|.++| ||+
T Consensus 193 ~fa~~l~~A~~~G---Vev 208 (235)
T COG1489 193 KFAELLREAIKAG---VEV 208 (235)
T ss_pred HHHHHHHHHHHcC---CEE
Confidence 5899999999999 555
No 415
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=20.18 E-value=2.4e+02 Score=26.30 Aligned_cols=43 Identities=16% Similarity=0.158 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHHHH-------------------HHHHHHhCCCeEEE-ecchhhHHhhc
Q 036028 97 RPLRTEEIPQIVNDFRLA-------------------ARNAIEAGDSNSDF-SNLNYMLIFSI 139 (193)
Q Consensus 97 ~~mt~~eI~~ii~~f~~A-------------------A~~a~~AGfDgVEI-~ahGyLl~qFl 139 (193)
.-.+.||+.++|.+-.++ |.-+.+||.|.|-| +..|---..++
T Consensus 283 DiysieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~ 345 (485)
T COG0069 283 DIYSIEDLAQLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPL 345 (485)
T ss_pred cccCHHHHHHHHHHHHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcH
Confidence 357899999999998877 44478999999999 88775444333
No 416
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=20.11 E-value=3e+02 Score=25.36 Aligned_cols=52 Identities=10% Similarity=0.050 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhCCCeEEE-ecchhhHHhhcCCCCCCCCChhhhhhHHHHHHHHHHHhcCCCCCcEEEEc
Q 036028 107 IVNDFRLAARNAIEAGDSNSDF-SNLNYMLIFSIKSDVEGRRSYKQRKRLRQDRVERLHQWQEPPPPPFLFSL 178 (193)
Q Consensus 107 ii~~f~~AA~~a~~AGfDgVEI-~ahGyLl~qFlSp~~N~Rts~eNR~Rf~~Eii~aIR~~vg~~~~~~~~ri 178 (193)
.++.|.+-|+...+.|.|-|-| -..| .|+|. -..|+|++||+.++ .+|.+-.
T Consensus 154 t~e~yv~~akel~~~g~DSIciKDmaG-----lltP~------------~ayelVk~iK~~~~---~pv~lHt 206 (472)
T COG5016 154 TLEYYVELAKELLEMGVDSICIKDMAG-----LLTPY------------EAYELVKAIKKELP---VPVELHT 206 (472)
T ss_pred cHHHHHHHHHHHHHcCCCEEEeecccc-----cCChH------------HHHHHHHHHHHhcC---CeeEEec
Confidence 5788999999999999999999 6666 45775 58899999999985 5666654
No 417
>PRK03705 glycogen debranching enzyme; Provisional
Probab=20.06 E-value=1e+02 Score=29.70 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=24.3
Q ss_pred hHHhHHHHHHHHHhcCCeEEEcc--cCCcc
Q 036028 36 QVEAWKPIVDAVHQKGGTFFCQL--WHVGR 63 (193)
Q Consensus 36 ~i~~~~~l~~~vh~~G~~i~~QL--~h~G~ 63 (193)
.+..+|+|++++|+.|.++++-+ +|.+.
T Consensus 240 ~~~efk~LV~~~H~~GI~VIlDvV~NHt~~ 269 (658)
T PRK03705 240 ALDEFRDAVKALHKAGIEVILDVVFNHSAE 269 (658)
T ss_pred hHHHHHHHHHHHHHCCCEEEEEEcccCccC
Confidence 46789999999999999999986 67764
No 418
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=20.03 E-value=88 Score=26.68 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=11.6
Q ss_pred HHHHHHHhCCCeEEE
Q 036028 114 AARNAIEAGDSNSDF 128 (193)
Q Consensus 114 AA~~a~~AGfDgVEI 128 (193)
|-..|.++|+|+||+
T Consensus 46 Af~~A~~~Gad~iE~ 60 (300)
T cd08612 46 AFEHAVKVGTDMLEL 60 (300)
T ss_pred HHHHHHHcCCCEEEE
Confidence 344567789999998
No 419
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=20.01 E-value=2.3e+02 Score=24.26 Aligned_cols=37 Identities=14% Similarity=0.026 Sum_probs=28.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE--ecchhhHHhh
Q 036028 96 PRPLRTEEIPQIVNDFRLAARNAIEAGDSNSDF--SNLNYMLIFS 138 (193)
Q Consensus 96 ~~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEI--~ahGyLl~qF 138 (193)
.+++|.+|+.++.+.+++-|+.- |++| +|....++++
T Consensus 172 ~~~~~~~~~~~l~~~l~~ia~~~------g~~l~tC~E~~~l~~~ 210 (266)
T PF08902_consen 172 IREPSEEEKRELAKRLAEIAKKY------GMTLYTCAEKIDLSQY 210 (266)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHc------CCEEEeCcCCcchhhc
Confidence 45789999999999999987763 6677 6666666655
Done!