BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036029
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AQU|A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|B Chain B, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|C Chain C, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|D Chain D, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
Length = 356
Score = 278 bits (712), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 149/344 (43%), Positives = 219/344 (63%), Gaps = 14/344 (4%)
Query: 24 QTLIRAGYWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVK 83
QT+++A YW EF ++D++S+LFTHL C FAD+NS + ++++S +++ +FS FT TV+
Sbjct: 2 QTVVKASYWFPASEFPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSANQPKFSTFTQTVQ 61
Query: 84 KKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWAN 143
++NPS+ TLLSIGGG + + Y+SMASNP+SRKSFIDSSI++AR YGF GLDL W + +
Sbjct: 62 RRNPSVKTLLSIGGGI-ADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYPS 120
Query: 144 TSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSP--YSTIGAYSIDSIRQYL 201
++ + N G L +EWR+AV EA ++S + +L+L A V YS YS + Y + ++ L
Sbjct: 121 SATEMTNFGTLLREWRSAVVAEA-SSSGKPRLLLAAAVFYSNNYYSVL--YPVSAVASSL 177
Query: 202 NWVHVITAEYSRPMWTNHTSAPAALVFNT------EYGITAWTDEGLSADKLVLGLPCYG 255
+WV+++ ++ P W+ T PAAL + + G +W GL A K VLG P YG
Sbjct: 178 DWVNLMAYDFYGPGWSRVTGPPAALFDPSNAGPSGDAGTRSWIQAGLPAKKAVLGFPYYG 237
Query: 256 YAWTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIG 315
YAW L + A TG A+S G + Y +I+ +I G +YNST V +YC G
Sbjct: 238 YAWRLTNANSHSYYAPTTGAAISPDGSIGYGQIRKFIVDNGAT--TVYNSTVVGDYCYAG 295
Query: 316 KIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYDHDWMLSQAA 359
W G+DD +++ KV YAK++ L GYF W V D + LS+AA
Sbjct: 296 TNWIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNSGLSRAA 339
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana
Tobaccum
Length = 353
Score = 264 bits (674), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 141/342 (41%), Positives = 201/342 (58%), Gaps = 13/342 (3%)
Query: 27 IRAGYWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKN 86
++ GYW +++++S LFTHL C FAD+N +L +SP ++ F FT TV++KN
Sbjct: 4 VKGGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSFRQFTSTVQRKN 63
Query: 87 PSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSW 146
PS+ T LSI GG+ N + Y MA P+SRKSFIDSSI++AR GF GLDL W + ++
Sbjct: 64 PSVKTFLSIAGGR-ANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYPLSAA 122
Query: 147 DNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHV 206
D N+G L EWR A+ EAR NS ++ L+LTA V+ SP Y ++S+ + L+W+++
Sbjct: 123 DMTNLGTLLNEWRTAINTEAR-NSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINL 181
Query: 207 ITAEYSRPMWTNHTSAPAALVFNT------EYGITAWTDEGLSADKLVLGLPCYGYAWTL 260
+ ++ P W+ + A +F+ GI AW G+ KLVLG+P YGYAW L
Sbjct: 182 MAYDFYGPNWSPSQTNSHAQLFDPVNHVSGSDGINAWIQAGVPTKKLVLGIPFYGYAWRL 241
Query: 261 VKPEDNGIGAAATGPA---LSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGKI 317
V +G+ A A G + D G +TY I++YI +YN+T V +YC G
Sbjct: 242 VNANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVE--SRATTVYNATIVGDYCYSGSN 299
Query: 318 WFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYDHDWMLSQAA 359
W +DD + VR KV Y K + L GYF W VA D +W LS+ A
Sbjct: 300 WISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLSRTA 341
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From
Nicotiana Tobaccum In Complex With Nag4
Length = 353
Score = 263 bits (673), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 141/342 (41%), Positives = 201/342 (58%), Gaps = 13/342 (3%)
Query: 27 IRAGYWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKN 86
++ GYW +++++S LFTHL C FAD+N +L +SP ++ F FT TV++KN
Sbjct: 4 VKGGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSFRQFTSTVQRKN 63
Query: 87 PSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSW 146
PS+ T LSI GG+ N + Y MA P+SRKSFIDSSI++AR GF GLDL W + ++
Sbjct: 64 PSVKTFLSIAGGR-ANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWQYPLSAA 122
Query: 147 DNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHV 206
D N+G L EWR A+ EAR NS ++ L+LTA V+ SP Y ++S+ + L+W+++
Sbjct: 123 DMTNLGTLLNEWRTAINTEAR-NSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINL 181
Query: 207 ITAEYSRPMWTNHTSAPAALVFNT------EYGITAWTDEGLSADKLVLGLPCYGYAWTL 260
+ ++ P W+ + A +F+ GI AW G+ KLVLG+P YGYAW L
Sbjct: 182 MAYDFYGPNWSPSQTNSHAQLFDPVNHVSGSDGINAWIQAGVPTKKLVLGIPFYGYAWRL 241
Query: 261 VKPEDNGIGAAATGPA---LSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGKI 317
V +G+ A A G + D G +TY I++YI +YN+T V +YC G
Sbjct: 242 VNANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVE--SRATTVYNATIVGDYCYSGSN 299
Query: 318 WFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYDHDWMLSQAA 359
W +DD + VR KV Y K + L GYF W VA D +W LS+ A
Sbjct: 300 WISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLSRTA 341
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 147 bits (372), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 103/349 (29%), Positives = 170/349 (48%), Gaps = 44/349 (12%)
Query: 29 AGYWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSP-SDEKQFSNFTDTVKKKNP 87
A Y F D++ +L THL+ FA + T+++LS + +DE + F + +KK NP
Sbjct: 11 AQYRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEF-NGLKKMNP 67
Query: 88 SITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSW- 146
+ TLL+IGG N ++ M + ++R++F++S+I+ R Y F GLDL W + +
Sbjct: 68 KLKTLLAIGGW-NFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGS 126
Query: 147 ---DNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNW 203
D L ++ A EA+ S + +L+L+A V Y +D I Q L++
Sbjct: 127 PAVDKERFTTLVQDLANAFQQEAQT-SGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDF 185
Query: 204 VHVITAEY----------SRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPC 253
V+++ ++ + P++ + AA N + + W ++G A KL+LG+P
Sbjct: 186 VNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLEKGTPASKLILGMPT 245
Query: 254 YGYAWTLVKPEDNGIGAAAT-----GPALSDIGFVTYKEI-------KNYIKSYGPNVPV 301
YG ++TL D +GA AT GP + G + Y E+ K I+ VP
Sbjct: 246 YGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRIQD--QKVPY 303
Query: 302 MYNSTYVMNYCSIGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350
++ W GFDDVE+ + KV+Y K+K L G VW + D
Sbjct: 304 IFRDNQ----------WVGFDDVESFKTKVSYLKQKGLGGAMVWALDLD 342
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 147 bits (371), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 103/349 (29%), Positives = 169/349 (48%), Gaps = 44/349 (12%)
Query: 29 AGYWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSP-SDEKQFSNFTDTVKKKNP 87
A Y F D++ +L THL+ FA + T+++LS + +DE + F + +KK NP
Sbjct: 11 AQYRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEF-NGLKKMNP 67
Query: 88 SITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSW- 146
+ TLL+IGG N ++ M + ++R++F++S+I+ R Y F GLDL W + +
Sbjct: 68 KLKTLLAIGGW-NFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGS 126
Query: 147 ---DNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNW 203
D L ++ A EA+ S + +L+L+A V Y +D I Q L++
Sbjct: 127 PAVDKERFTTLVQDLANAFQQEAQT-SGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDF 185
Query: 204 VHVITAEY----------SRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPC 253
V+++ ++ + P++ + AA N + + W +G A KL+LG+P
Sbjct: 186 VNLMAYDFHGSWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTPASKLILGMPT 245
Query: 254 YGYAWTLVKPEDNGIGAAAT-----GPALSDIGFVTYKEI-------KNYIKSYGPNVPV 301
YG ++TL D +GA AT GP + G + Y E+ K I+ VP
Sbjct: 246 YGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRIQD--QKVPY 303
Query: 302 MYNSTYVMNYCSIGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350
++ W GFDDVE+ + KV+Y K+K L G VW + D
Sbjct: 304 IFRDNQ----------WVGFDDVESFKTKVSYLKQKGLGGAMVWALDLD 342
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 147 bits (371), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 103/349 (29%), Positives = 169/349 (48%), Gaps = 44/349 (12%)
Query: 29 AGYWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSP-SDEKQFSNFTDTVKKKNP 87
A Y F D++ +L THL+ FA + T+++LS + +DE + F + +KK NP
Sbjct: 11 AQYRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEF-NGLKKMNP 67
Query: 88 SITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSW- 146
+ TLL+IGG N ++ M + ++R++F++S+I+ R Y F GLDL W + +
Sbjct: 68 KLKTLLAIGGW-NFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGS 126
Query: 147 ---DNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNW 203
D L ++ A EA+ S + +L+L+A V Y +D I Q L++
Sbjct: 127 PAVDKERFTTLVQDLANAFQQEAQT-SGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDF 185
Query: 204 VHVITAEY----------SRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPC 253
V+++ ++ + P++ + AA N + + W +G A KL+LG+P
Sbjct: 186 VNLMAYDFHGSWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTPASKLILGMPT 245
Query: 254 YGYAWTLVKPEDNGIGAAAT-----GPALSDIGFVTYKEI-------KNYIKSYGPNVPV 301
YG ++TL D +GA AT GP + G + Y E+ K I+ VP
Sbjct: 246 YGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRIQD--QKVPY 303
Query: 302 MYNSTYVMNYCSIGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350
++ W GFDDVE+ + KV+Y K+K L G VW + D
Sbjct: 304 IFRDNQ----------WVGFDDVESFKTKVSYLKQKGLGGAMVWALDLD 342
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 103/349 (29%), Positives = 169/349 (48%), Gaps = 44/349 (12%)
Query: 29 AGYWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSP-SDEKQFSNFTDTVKKKNP 87
A Y F D++ +L THL+ FA + T+++LS + +DE + F + +KK NP
Sbjct: 11 AQYRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEF-NGLKKMNP 67
Query: 88 SITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSW- 146
+ TLL+IGG N ++ M + ++R++F++S+I+ R Y F GLDL W + +
Sbjct: 68 KLKTLLAIGGW-NFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGS 126
Query: 147 ---DNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNW 203
D L ++ A EA+ S + +L+L+A V Y +D I Q L++
Sbjct: 127 PAVDKERFTTLVQDLANAFQQEAQT-SGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDF 185
Query: 204 VHVITAEY----------SRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPC 253
V+++ ++ + P++ + AA N + + W +G A KL+LG+P
Sbjct: 186 VNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPT 245
Query: 254 YGYAWTLVKPEDNGIGAAAT-----GPALSDIGFVTYKEI-------KNYIKSYGPNVPV 301
YG ++TL D +GA AT GP + G + Y E+ K I+ VP
Sbjct: 246 YGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRIQD--QKVPY 303
Query: 302 MYNSTYVMNYCSIGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350
++ W GFDDVE+ + KV+Y K+K L G VW + D
Sbjct: 304 IFRDNQ----------WVGFDDVESFKTKVSYLKQKGLGGAMVWALDLD 342
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 162/333 (48%), Gaps = 26/333 (7%)
Query: 37 EFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIG 96
F D+N L THL+ FA + + E++ ++ + +K KN + TLL+IG
Sbjct: 19 RFMPDDINPCLCTHLIYAFAGMQNN--EITTIEWNDVTLYQAFNGLKNKNSQLKTLLAIG 76
Query: 97 GGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANT----SWDNYNIG 152
G N + +++M S P +R++FI S IK R Y F GLD W + + D +
Sbjct: 77 G-WNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFT 135
Query: 153 ILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEY- 211
+L +E R A EA+ ++ +L++TA VA + Y I + QYL+++HV+T +
Sbjct: 136 VLVQEMREAFEQEAKQ-INKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLH 194
Query: 212 ---------SRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWTLVK 262
+ P++ T + N +Y + W D G A+KL++G P YG+ + L
Sbjct: 195 GSWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSN 254
Query: 263 PEDNGIGAAAT-----GPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGKI 317
P + GIGA + GP + G Y EI ++K+ +++ + Y G +
Sbjct: 255 PSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFLKN---GATQGWDAPQEVPYAYQGNV 311
Query: 318 WFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350
W G+D+V++ +K + K K G VW + D
Sbjct: 312 WVGYDNVKSFDIKAQWLKHNKFGGAMVWAIDLD 344
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/349 (29%), Positives = 169/349 (48%), Gaps = 44/349 (12%)
Query: 29 AGYWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSP-SDEKQFSNFTDTVKKKNP 87
A Y F D++ +L THL+ FA + T+++LS + +DE + F + +KK NP
Sbjct: 11 AQYRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEF-NGLKKMNP 67
Query: 88 SITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSW- 146
+ TLL+IGG N ++ M + ++R++F++S+I+ R Y F GLDL W + +
Sbjct: 68 KLKTLLAIGGW-NFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGS 126
Query: 147 ---DNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNW 203
D L ++ A EA+ S + +L+L+A V Y +D I Q L++
Sbjct: 127 PAVDKERFTTLVQDLANAFQQEAQT-SGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDF 185
Query: 204 VHVITAEY----------SRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPC 253
V+++ ++ + P++ + AA N + + W +G A KL+LG+P
Sbjct: 186 VNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPT 245
Query: 254 YGYAWTLVKPEDNGIGAAAT-----GPALSDIGFVTYKEI-------KNYIKSYGPNVPV 301
YG ++TL D +GA AT GP + G + Y E+ K I+ VP
Sbjct: 246 YGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRIQDQ--KVPY 303
Query: 302 MYNSTYVMNYCSIGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350
++ W GFDDVE+ + KV+Y K+K L G VW + D
Sbjct: 304 IFRDNQ----------WVGFDDVESFKTKVSYLKQKGLGGAMVWALDLD 342
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
Length = 381
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 162/333 (48%), Gaps = 26/333 (7%)
Query: 37 EFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIG 96
F D+N L THL+ FA + + E++ ++ + +K KN + TLL+IG
Sbjct: 23 RFMPDDINPCLCTHLIYAFAGMQNN--EITTIEWNDVTLYQAFNGLKNKNSQLKTLLAIG 80
Query: 97 GGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANT----SWDNYNIG 152
G N + +++M S P +R++FI S IK R Y F GLD W + + D +
Sbjct: 81 G-WNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFT 139
Query: 153 ILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEY- 211
+L +E R A EA+ ++ +L++TA VA + Y I + QYL+++HV+T +
Sbjct: 140 VLVQEMREAFEQEAKQ-INKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLH 198
Query: 212 ---------SRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWTLVK 262
+ P++ T + N +Y + W D G A+KL++G P YG+ + L
Sbjct: 199 GSWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSN 258
Query: 263 PEDNGIGAAAT-----GPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGKI 317
P + GIGA + GP + G Y EI ++K+ +++ + Y G +
Sbjct: 259 PSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFLKN---GATQGWDAPQEVPYAYQGNV 315
Query: 318 WFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350
W G+D++++ +K + K K G VW + D
Sbjct: 316 WVGYDNIKSFDIKAQWLKHNKFGGAMVWAIDLD 348
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|C Chain C, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|D Chain D, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJW|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJW|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJX|A Chain A, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|B Chain B, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|C Chain C, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|D Chain D, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1NWR|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWS|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWT|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWU|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
Length = 362
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 167/335 (49%), Gaps = 26/335 (7%)
Query: 31 YWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSIT 90
Y + F ++ L TH++ FA++++ + ++ +T+K +NP++
Sbjct: 13 YREGDGSCFPDALDRFLCTHIIYSFANISND--HIDTWEWNDVTLYGMLNTLKNRNPNLK 70
Query: 91 TLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYN 150
TLLS+GG N +S +ASN SR++FI S R +GF GLDL+W + D +
Sbjct: 71 TLLSVGGW-NFGSQRFSKIASNTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRR-DKQH 128
Query: 151 IGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAE 210
L KE +A EA+ + QL+L+A ++ + +Y I I Q+L+++ ++T +
Sbjct: 129 FTTLIKEMKAEFIKEAQ--PGKKQLLLSAALSAGKVTIDSSYDIAKISQHLDFISIMTYD 186
Query: 211 Y----------SRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWTL 260
+ P++ A NT+Y + G A KLV+G+P +G ++TL
Sbjct: 187 FHGAWRGTTGHHSPLFRGQEDASPDRFSNTDYAVGYMLRLGAPASKLVMGIPTFGRSFTL 246
Query: 261 VKPEDNGIGAAATGPAL-----SDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIG 315
E G+GA +GP + + G + Y EI ++++ G V + + Y + G
Sbjct: 247 ASSE-TGVGAPISGPGIPGRFTKEAGTLAYYEICDFLR--GATVHRILGQQ--VPYATKG 301
Query: 316 KIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350
W G+DD E+V+ KV Y K+++L G VW + D
Sbjct: 302 NQWVGYDDQESVKSKVQYLKDRQLAGAMVWALDLD 336
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 127 bits (319), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 89/337 (26%), Positives = 165/337 (48%), Gaps = 39/337 (11%)
Query: 37 EFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIG 96
+F +++ L +HL+ FA + + ++ + E +++K KNP + LLSIG
Sbjct: 20 KFTPENIDPFLCSHLIYSFASIENN--KVIIKDKSEVMLYQTINSLKTKNPKLKILLSIG 77
Query: 97 G------GKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYN 150
G G +P M + +SR FI+S I R + F GLD+SW + + +N +
Sbjct: 78 GYLFGSKGFHP-------MVDSSTSRLEFINSIILFLRNHNFDGLDVSWIYPDQK-ENTH 129
Query: 151 IGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAE 210
+L E A + S++ +L+LTA V+ +Y ++ + + L+++++++ +
Sbjct: 130 FTVLIHELAEAFQKDF-TKSTKERLLLTAGVSAGRQMIDNSYQVEKLAKDLDFINLLSFD 188
Query: 211 Y----SRPMWTNHTS---------APAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYA 257
+ +P+ T H S P++ +N EY + W +G+ ++K+V+G+P YG++
Sbjct: 189 FHGSWEKPLITGHNSPLSKGWQDRGPSSY-YNVEYAVGYWIHKGMPSEKVVMGIPTYGHS 247
Query: 258 WTLVKPEDN----GIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCS 313
+TL E G A GP GF+ Y EI ++K G + + + + Y
Sbjct: 248 FTLASAETTVGAPASGPGAAGPITESSGFLAYYEICQFLK--GAKITRLQDQQ--VPYAV 303
Query: 314 IGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350
G W G+DDV+++ KV + K L G +W + D
Sbjct: 304 KGNQWVGYDDVKSMETKVQFLKNLNLGGAMIWSIDMD 340
>pdb|1SYT|A Chain A, Crystal Structure Of Signalling Protein From Goat Spg-40
In The Presense Of N,n',n''-triacetyl-chitotriose At
2.6a Resolution
Length = 361
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 168/335 (50%), Gaps = 27/335 (8%)
Query: 31 YWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSIT 90
Y + F ++ L TH++ FA++++ E+ ++ + +T+K +NP +
Sbjct: 13 YREGDGSCFPDAIDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPKLK 70
Query: 91 TLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYN 150
TLLS+GG N +S +AS SR++FI S R +GF GLDL+W + D +
Sbjct: 71 TLLSVGGW-NFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRR-DKRH 128
Query: 151 IGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAE 210
+ L KE +A A EA+ + +L+L+A V+ + Y I I ++L+++ ++T +
Sbjct: 129 LTALVKEMKAEFAREAQ--AGTERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYD 186
Query: 211 Y----------SRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWTL 260
+ P++ ++ A + N +Y ++ G A+KLV+G+P +G ++TL
Sbjct: 187 FHGAWRQTVGHHSPLFRGNSDASSRFS-NADYAVSYMLRLGAPANKLVMGIPTFGRSFTL 245
Query: 261 VKPEDNGIGAAATGPAL-----SDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIG 315
+ +G GA +GP + + G + Y EI +++ +G + + Y + G
Sbjct: 246 ASSKTDG-GAPISGPGIPGRFTKEKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKG 300
Query: 316 KIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350
W +DD E+V+ K Y K ++L G VW + D
Sbjct: 301 NQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLD 335
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/328 (27%), Positives = 164/328 (50%), Gaps = 29/328 (8%)
Query: 39 FISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIGGG 98
F ++ L TH++ FA++++ E+ ++ + +T+K +NP++ TLLS+GG
Sbjct: 21 FPDAIDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPNLKTLLSVGGW 78
Query: 99 KNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSW-DNYNIGILFKE 157
N +S +AS SR++FI S R +GF GLDL+W W W D ++ L KE
Sbjct: 79 -NYGSQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLWP--GWRDKRHLTTLVKE 135
Query: 158 WRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEY------ 211
+A EA+ + QL+L+A V + Y I I ++L+++ ++T ++
Sbjct: 136 MKAEFVREAQ--AGTEQLLLSAAVTAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQ 193
Query: 212 ----SRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNG 267
P++ + A + N +Y ++ G A+KLV+G+P +G ++TL + +
Sbjct: 194 TVGHHSPLFRGNEDASSRFS-NADYAVSYMLRLGAPANKLVMGIPTFGRSYTLASSKTD- 251
Query: 268 IGAAATGPALSDI-----GFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGKIWFGFD 322
+GA +GP + G + Y EI +++ +G + + Y + G W +D
Sbjct: 252 VGAPISGPGIPGRFTKWKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKGNQWVAYD 307
Query: 323 DVEAVRMKVAYAKEKKLRGYFVWKVAYD 350
D E+V+ K Y K ++L G VW + D
Sbjct: 308 DQESVKNKARYLKNRQLAGAMVWALDLD 335
>pdb|1LJY|A Chain A, Crystal Structure Of A Novel Regulatory 40 Kda Mammary
Gland Protein (Mgp-40) Secreted During Involution
Length = 361
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 169/334 (50%), Gaps = 25/334 (7%)
Query: 31 YWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSIT 90
Y + F ++ L TH++ FA++++ E+ ++ + +T+K +NP +
Sbjct: 13 YREGDGSCFPDAIDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPKLK 70
Query: 91 TLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYN 150
TLLS+GG N +S++AS SR++FI S R +GF GLDL+W + D +
Sbjct: 71 TLLSVGGW-NFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRR-DKRH 128
Query: 151 IGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAE 210
+ L KE +A A EA+ + +L+L+A V+ + Y I I ++L+++ ++T +
Sbjct: 129 LTALVKEMKAEFAREAQ--AGTERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYD 186
Query: 211 YS---RPMWTNHT------SAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWTLV 261
+ R +H+ S ++ N +Y ++ G A+KLV+G+P +G ++TL
Sbjct: 187 FHGAWRQTVGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLA 246
Query: 262 KPEDNGIGAAATGPAL-----SDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGK 316
+ +G GA +GP + + G + Y EI +++ +G + + Y + G
Sbjct: 247 SSKTDG-GAPISGPGIPGRFTKEKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKGN 301
Query: 317 IWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350
W +DD E+V+ K Y K ++L G VW + D
Sbjct: 302 QWVAYDDQESVKNKARYLKNRQLAGAMVWALDLD 335
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein (Spg-40)
Complexed With A Designed Peptide Trp-Pro-Trp At 3.2a
Resolution
pdb|1ZBW|A Chain A, Crystal Structure Of The Complex Formed Between Signalling
Protein From Goat Mammary Gland (Spg-40) And A
Tripeptide Trp-Pro-Trp At 2.8a Resolution
pdb|1ZU8|A Chain A, Crystal Structure Of The Goat Signalling Protein With A
Bound Trisaccharide Reveals That Trp78 Reduces The
Carbohydrate Binding Site To Half
pdb|2AOS|A Chain A, Protein-protein Interactions Of Protective Signalling
Factor: Crystal Structure Of Ternary Complex Involving
Signalling Protein From Goat (spg-40), Tetrasaccharide
And A Tripeptide Trp-pro-trp At 2.9 A Resolution
pdb|2B31|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 3.1 A
Resolution Reveals Large Scale Conformational Changes In
The Residues Of Tim Barrel
pdb|2DSZ|A Chain A, Three Dimensional Structure Of A Goat Signalling Protein
Secreted During Involution
pdb|2DT0|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With The Trimer Of N-acetylglucosamine At 2.45a
Resolution
pdb|2DT1|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With Tetrasaccharide At 2.09 A Resolution
pdb|2DT2|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 2.9a
Resolution
pdb|2DT3|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein And The Hexasaccharide At 2.28 A
Resolution
pdb|2O92|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Tetrasaccharide At 3.0a Resolution
pdb|2OLH|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Cellobiose At 2.78 A Resolution
Length = 361
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 168/335 (50%), Gaps = 27/335 (8%)
Query: 31 YWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSIT 90
Y + F ++ L TH++ FA++++ E+ ++ + +T+K +NP +
Sbjct: 13 YREGDGSCFPDAIDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPKLK 70
Query: 91 TLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYN 150
TLLS+GG N +S +AS SR++FI S R +GF GLDL+W + D +
Sbjct: 71 TLLSVGGW-NFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRR-DKRH 128
Query: 151 IGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAE 210
+ L KE +A A EA+ + +L+L+A V+ + Y I I ++L+++ ++T +
Sbjct: 129 LTALVKEMKAEFAREAQ--AGTERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYD 186
Query: 211 Y----------SRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWTL 260
+ P++ ++ A + N +Y ++ G A+KLV+G+P +G ++TL
Sbjct: 187 FHGAWRQTVGHHSPLFRGNSDASSRFS-NADYAVSYMLRLGAPANKLVMGIPTFGRSFTL 245
Query: 261 VKPEDNGIGAAATGPAL-----SDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIG 315
+ + +GA +GP + + G + Y EI +++ +G + + Y + G
Sbjct: 246 ASSKTD-VGAPISGPGIPGRFTKEKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKG 300
Query: 316 KIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350
W +DD E+V+ K Y K ++L G VW + D
Sbjct: 301 NQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLD 335
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40)
At 3.0a Resolution Using Crystal Grown In The Presence
Of Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein
From Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide
(Nag6) And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 167/335 (49%), Gaps = 27/335 (8%)
Query: 31 YWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSIT 90
Y + F ++ L TH++ FA++++ E+ ++ + +T+K +NP +
Sbjct: 13 YREGDGSCFPDAIDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPKLK 70
Query: 91 TLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYN 150
TLLS+GG N +S++AS SR++FI S R +GF GLDL+W + D +
Sbjct: 71 TLLSVGGW-NFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRR-DKRH 128
Query: 151 IGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAE 210
+ L KE +A EA+ + QL+L+A V+ + Y I I ++L+++ ++T +
Sbjct: 129 LTTLVKEMKAEFIREAQ--AGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYD 186
Query: 211 Y----------SRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWTL 260
+ P++ + A + N +Y ++ G A+KLV+G+P +G ++TL
Sbjct: 187 FHGAWRQTVGHHSPLFAGNEDASSRFS-NADYAVSYMLRLGAPANKLVMGIPTFGRSFTL 245
Query: 261 VKPEDNGIGAAATGPAL-----SDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIG 315
+ + +GA +GP + + G + Y EI +++ +G + + Y + G
Sbjct: 246 ASSKTD-VGAPVSGPGVPGRFTKEKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKG 300
Query: 316 KIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350
W +DD E+V+ K Y K ++L G VW + D
Sbjct: 301 NQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLD 335
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling
Protein From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein
Liganded With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A
Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
Porcine Mammary Gland (Spp-40): Crystal Structure Of The
Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
Resolution
Length = 361
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 166/335 (49%), Gaps = 27/335 (8%)
Query: 31 YWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSIT 90
Y + F ++ L TH++ FA++++ E+ ++ + +T+K +NP++
Sbjct: 13 YREGDGSCFPDAIDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPNLK 70
Query: 91 TLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYN 150
TLLS+GG N +S +AS SR++FI S R +GF GLDL+W + D +
Sbjct: 71 TLLSVGGW-NFGPQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRR-DKRH 128
Query: 151 IGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAE 210
+ L KE +A EA+ + QL+L+A V+ + Y I I ++L+++ ++T +
Sbjct: 129 LTTLVKEMKAEFIREAQ--AGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYD 186
Query: 211 Y----------SRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWTL 260
+ P++ A + N +Y ++ G A+KLV+G+P +G ++TL
Sbjct: 187 FHGAWRQTVGHHSPLFRGQEDASSRFS-NADYAVSYMLRLGAPANKLVMGIPTFGKSFTL 245
Query: 261 VKPEDNGIGAAATGPAL-----SDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIG 315
+ + +GA +GP + + G + Y EI ++++ G + + Y + G
Sbjct: 246 ASSKTD-VGAPVSGPGIPGQFTKEKGILAYYEICDFLQ--GATTHRFRDQQ--VPYATKG 300
Query: 316 KIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350
W +DD E+V+ K Y K ++L G VW + D
Sbjct: 301 NQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLD 335
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein
(Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a
Resolution Reveals Specific Binding Characteristics Of
Sps-40
Length = 361
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 166/335 (49%), Gaps = 27/335 (8%)
Query: 31 YWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSIT 90
Y + F ++ L TH++ FA++++ E+ ++ + +T+K +NP +
Sbjct: 13 YREGDGSCFPDAIDPFLCTHVIYTFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPKLK 70
Query: 91 TLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYN 150
TLLS+GG N +S +AS SR++FI S R +GF GLDL+W + D +
Sbjct: 71 TLLSVGGW-NFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRR-DKRH 128
Query: 151 IGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAE 210
+ L KE +A EA+ + QL+L+A V+ + Y I I ++L+++ ++T +
Sbjct: 129 LTTLVKEMKAEFIREAQ--AGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYD 186
Query: 211 Y----------SRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWTL 260
+ P++ + A + N +Y ++ G A+KLV+G+P +G ++TL
Sbjct: 187 FHGAWRQTVGHHSPLFRGNEDASSRFS-NADYAVSYMLRLGAPANKLVMGIPTFGRSFTL 245
Query: 261 VKPEDNGIGAAATGPAL-----SDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIG 315
+ + +GA +GP + + G + Y EI +++ +G + + Y + G
Sbjct: 246 ASSKTD-VGAPVSGPGIPGRFTKEKGILAYYEICDFL--HGATTHRFRDQQ--VPYATKG 300
Query: 316 KIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350
W +DD E+V+ K Y K ++L G VW + D
Sbjct: 301 NQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLD 335
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1
Suggests A Saccharide Binding Site
pdb|1VF8|A Chain A, The Crystal Structure Of Ym1 At 1.31 A Resolution
Length = 377
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 158/333 (47%), Gaps = 28/333 (8%)
Query: 38 FFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIGG 97
F +++ L THL+ FA + + E++ + + + + +K KN + TLL+IGG
Sbjct: 20 FKPGNIDPCLCTHLIYAFAGMQNN--EITYTHEQDLRDYEALNGLKDKNTELKTLLAIGG 77
Query: 98 GK-NPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSW----DNYNIG 152
K P + +S+M S P +R+ FI S I+ R Y F GL+L W + + D +
Sbjct: 78 WKFGP--APFSAMVSTPQNRQIFIQSVIRFLRQYNFDGLNLDWQYPGSRGSPPKDKHLFS 135
Query: 153 ILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEY- 211
+L KE R A E+ +L+LT+ A Y I + Q L+++ V+T +
Sbjct: 136 VLVKEMRKAFEEESVEKDI-PRLLLTSTGAGIIDVIKSGYKIPELSQSLDYIQVMTYDLH 194
Query: 212 ---------SRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWTLVK 262
+ P++ + + N + I+ W D G +++KL++G P YG+ + L
Sbjct: 195 DPKDGYTGENSPLYKSPYDIGKSADLNVDSIISYWKDHGAASEKLIVGFPAYGHTFILSD 254
Query: 263 PEDNGIGAA--ATGPA---LSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGKI 317
P GIGA +TGP + G + Y E+ ++ V +++ + Y G
Sbjct: 255 PSKTGIGAPTISTGPPGKYTDESGLLAYYEVCTFLNEGATEV---WDAPQEVPYAYQGNE 311
Query: 318 WFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350
W G+D+V + ++K + K+ L G VW + D
Sbjct: 312 WVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDMD 344
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein (Spc-40)
Secreted During Involution
Length = 361
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 167/336 (49%), Gaps = 29/336 (8%)
Query: 31 YWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSIT 90
Y + F ++ L TH++ FA++++ E+ ++ + +T+K +NP++
Sbjct: 13 YREGDGSCFPDAIDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPNLK 70
Query: 91 TLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSW-DNY 149
TLLS+GG N +S +AS SR++FI S R +GF GLDL+W + W D
Sbjct: 71 TLLSVGGW-NFGSERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYP--GWRDKR 127
Query: 150 NIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITA 209
++ L KE +A EA+ + QL+L+A V + Y I I ++L+++ ++T
Sbjct: 128 HLTTLVKEMKAEFVREAQ--AGTEQLLLSAAVPAGKIAIDRGYDIAQISRHLDFISLLTY 185
Query: 210 EY----------SRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWT 259
++ P++ ++ + N +Y ++ G A+KLV+G+P +G ++T
Sbjct: 186 DFHGGWRGTVGHHSPLFRGNSDGSSRFS-NADYAVSYMLRLGAPANKLVMGIPTFGRSYT 244
Query: 260 LVKPEDNGIGAAATGPAL-----SDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSI 314
L + + +GA +GP + + G + Y EI +++ +G + + Y +
Sbjct: 245 LASSKTD-VGAPISGPGIPGQFTKEKGTLAYYEICDFL--HGATTHRFRDQQ--VPYATK 299
Query: 315 GKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350
G W +DD E+V+ K Y K ++L G VW + D
Sbjct: 300 GNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLD 335
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling
Protein From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 165/336 (49%), Gaps = 29/336 (8%)
Query: 31 YWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSIT 90
Y + F ++ L TH++ FA++++ E+ ++ + +T+K +NP++
Sbjct: 13 YREGDGSCFPDAIDPFLCTHVIYSFANISNN--EIDTWEWNDVTLYDTLNTLKNRNPNLK 70
Query: 91 TLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSW-DNY 149
TLLS+GG N +S +AS SR++FI S R +GF GLDL+W + W D
Sbjct: 71 TLLSVGGW-NFGSERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYP--GWRDKR 127
Query: 150 NIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITA 209
++ L KE +A EA+ + QL+L+A V + Y I I ++L+++ ++T
Sbjct: 128 HLTTLVKEMKAEFVREAQ--AGTEQLLLSAAVTAGKIAIDRGYDIAQISRHLDFISLLTY 185
Query: 210 EY----------SRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWT 259
++ P++ ++ + N +Y ++ G A+KLV+G+P +G ++T
Sbjct: 186 DFHGGWRGTVGHHSPLFRGNSDGSSRFS-NADYAVSYMLRLGAPANKLVMGIPTFGRSYT 244
Query: 260 LVKPEDNGIGAAATGPAL-----SDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSI 314
L +GA +GP + + G + Y EI +++ +G + + Y +
Sbjct: 245 LASSSTR-VGAPISGPGIPGQFTKEKGILAYYEICDFL--HGATTHRFRDQQ--VPYATK 299
Query: 315 GKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350
G W +DD E+V+ K Y K ++L G VW + D
Sbjct: 300 GNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLD 335
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans
Wl-12
Length = 419
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 139/321 (43%), Gaps = 58/321 (18%)
Query: 77 NFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLD 136
N + +K+ NP++ T++S+GG N +S +A+ ++R+ F +S++ R Y F G+D
Sbjct: 111 NQLNKLKQTNPNLKTIISVGGWTWSN--RFSDVAATAATREVFANSAVDFLRKYNFDGVD 168
Query: 137 LSWSW---------ANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYS 187
L W + + D N +L + R L+A + +LT +A +
Sbjct: 169 LDWEYPVSGGLDGNSKRPEDKQNYTLLLSKIREK--LDAAGAVDGKKYLLT--IASGASA 224
Query: 188 TIGAYS-IDSIRQYLNWVHVITAEYS----------RPMWTNHTSA------PAALVFNT 230
T A + + I ++W++++T +++ P+ N+ A P A FN
Sbjct: 225 TYAANTELAKIAAIVDWINIMTYDFNGAWQKISAHNAPL--NYDPAASAAGVPDANTFNV 282
Query: 231 EYGITAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNGIGAAATGPALSDIG------FVT 284
G D G+ A KLVLG+P YG W NG TG S +G F
Sbjct: 283 AAGAQGHLDAGVPAAKLVLGVPFYGRGWDGCAQAGNGQYQTCTGG--SSVGTWEAGSFDF 340
Query: 285 YKEIKNYIKSYG--------PNVPVMYNSTYVMNYCSIGKIWFGFDDVEAVRMKVAYAKE 336
Y NYI G VP +YN++ K + +DD E+V K AY K
Sbjct: 341 YDLEANYINKNGYTRYWNDTAKVPYLYNAS--------NKRFISYDDAESVGYKTAYIKS 392
Query: 337 KKLRGYFVWKVAYDHDWMLSQ 357
K L G W+++ D + L
Sbjct: 393 KGLGGAMFWELSGDRNKTLQN 413
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 151/341 (44%), Gaps = 46/341 (13%)
Query: 42 DVNSALFTHLMCGFADVNSTSYELSLSPS---DEKQF--SNFTDT-------------VK 83
D+ TH++ FA+V + E+ ++ S EK + +++DT +K
Sbjct: 63 DLPVERLTHVLYAFANVRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGCIKQLYLLK 122
Query: 84 KKNPSITTLLSIGG-GKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWA 142
K+N ++ LLSIGG +PN++ AS + RK+F +++K+ + GF GLD+ W +
Sbjct: 123 KQNRNLKVLLSIGGWTYSPNFA---PAASTDAGRKNFAKTAVKLLQDLGFDGLDIDWEYP 179
Query: 143 NTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLN 202
+ +L KE R A+ + N+ +LT P I + + Q L+
Sbjct: 180 ENDQQANDFVLLLKEVRTALDSYSAANAGGQHFLLTVASPAGP-DKIKVLHLKDMDQQLD 238
Query: 203 WVHVITAEYSRPMWT---------NHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPC 253
+ +++ +Y+ + N TS P + FNT+ + + G+ A+K+VLG+P
Sbjct: 239 FWNLMAYDYAGSFSSLSGHQANVYNDTSNPLSTPFNTQTALDLYRAGGVPANKIVLGMPL 298
Query: 254 YGYAWTLV----KPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVM 309
YG ++ KP NG+G + + G YK + G V+ +
Sbjct: 299 YGRSFANTDGPGKPY-NGVGQGSW-----ENGVWDYKA----LPQAGATEHVLPDIMASY 348
Query: 310 NYCSIGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350
+Y + K +D+ + +K Y K L G W + D
Sbjct: 349 SYDATNKFLISYDNPQVANLKSGYIKSLGLGGAMWWDSSSD 389
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 151/342 (44%), Gaps = 46/342 (13%)
Query: 41 SDVNSALFTHLMCGFADVNSTSYELSLSPS---DEKQF--SNFTDT-------------V 82
D+ TH++ FA+V + E+ ++ S EK + +++DT +
Sbjct: 24 QDLPVERLTHVLYAFANVRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGCIKQLYLL 83
Query: 83 KKKNPSITTLLSIGG-GKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSW 141
KK+N ++ LLSIGG +PN++ AS + RK+F +++K+ + GF GLD+ W +
Sbjct: 84 KKQNRNLKVLLSIGGWTYSPNFA---PAASTDAGRKNFAKTAVKLLQDLGFDGLDIDWEY 140
Query: 142 ANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYL 201
+ +L +E R A+ + N+ +LT P I + + Q L
Sbjct: 141 PENDQQANDFVLLLREVRTALDSYSAANAGGQHFLLTVASPAGP-DKIKVLHLKDMDQQL 199
Query: 202 NWVHVITAEYSRPMWT---------NHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLP 252
++ +++ +Y+ + N TS P + FNT+ + + G+ A+K+VLG+P
Sbjct: 200 DFWNLMAYDYAGSFSSLSGHQANVYNDTSNPLSTPFNTQTALDLYRAGGVPANKIVLGMP 259
Query: 253 CYGYAWTLV----KPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYV 308
YG ++ KP NG+G + + G YK + G V+ +
Sbjct: 260 LYGRSFANTDGPGKPY-NGVGQGSW-----ENGVWDYKA----LPQAGATEHVLPDIMAS 309
Query: 309 MNYCSIGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350
+Y + K +D+ + +K Y K L G W + D
Sbjct: 310 YSYDATNKFLISYDNPQVANLKSGYIKSLGLGGAMWWDSSSD 351
>pdb|3G6L|A Chain A, The Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea
pdb|3G6M|A Chain A, Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea In Complex With
A Potent Inhibitor Caffeine
Length = 406
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 93/373 (24%), Positives = 168/373 (45%), Gaps = 51/373 (13%)
Query: 14 IFSESLPTRAQTLIRAGYWDS----GDEFFISDVNSALFTHLMCGFAD--VNSTSYELSL 67
+ S L TRA I A Y+ + G F +D+ ++ H++ F + V+ T Y
Sbjct: 9 LASTDLSTRATGSINAVYFTNWGIYGRNFQPADLQASKILHVLYSFMNLRVDGTVYSGDT 68
Query: 68 SPSDEKQFSN--FTD-------------TVKKKNPSITTLLSIGGGKNPNYST-YSSMAS 111
EK +S+ + D +KK N S+ +LSIGG +ST + + AS
Sbjct: 69 YADLEKHYSDDSWNDIGTNAYGCVKQLYKLKKANRSLKIMLSIGGW---TWSTNFPAAAS 125
Query: 112 NPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARN--N 169
++R +F ++++ + +GF G+D+ W + + D N+ +L + R + + N
Sbjct: 126 TEATRATFAKTAVEFMKDWGFDGIDVDWEYPASETDANNMVLLLQRVRQELDSYSATYAN 185
Query: 170 SSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYS------RPMWTN---HT 220
QL + A S Y+ + + S+ L+ ++++ +Y+ TN T
Sbjct: 186 GYHFQLSIAAPAGPSHYNVLKLAQLGSV---LDNINLMAYDYAGSWDSVSGHQTNLYPST 242
Query: 221 SAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNGIGAAATGPALSDI 280
S P++ F+T+ + A+ G+ A K++LG+P YG A+ +G G S I
Sbjct: 243 SNPSSTPFSTKAAVDAYIAAGVPASKIILGMPIYGRAF---------VGTDGPGKPYSTI 293
Query: 281 GFVTYKE-IKNY--IKSYGPNVPVMYNSTYVMNYCSIGKIWFGFDDVEAVRMKVAYAKEK 337
G +++ I +Y + G V + +Y S + +D + VR KV+YAK
Sbjct: 294 GEGSWESGIWDYKVLPKAGATVITDSAAGATYSYDSSSRTMISYDTPDMVRTKVSYAKGL 353
Query: 338 KLRGYFVWKVAYD 350
L G W+ + D
Sbjct: 354 GLGGSMFWEASAD 366
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/370 (23%), Positives = 159/370 (42%), Gaps = 72/370 (19%)
Query: 49 THLMCGFADV---NSTSYELSLSPSDEK-QFSNFTDTVKKKNPSITTLLSIGGGKN--PN 102
+HL+ G+A + N +Y ++ + K QFS T ++K+K P + LLS+GG + P+
Sbjct: 34 SHLVYGYAGLRGENLQAYSMNENLDIYKHQFSEVT-SLKRKYPHLKVLLSVGGDHDIDPD 92
Query: 103 Y-STYSSMASNPSSRK-SFIDSSIKIARLYGFQGLDLSWSWANTSWDNY--NIGI----- 153
+ + Y + R+ FI S+ ++ + YGF GLDL++ + ++G+
Sbjct: 93 HPNKYIDLLEGEKVRQIGFIRSAYELVKTYGFDGLDLAYQFPKNKPRKVHGDLGLAWKSI 152
Query: 154 ---------------LFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIR 198
L KE A+ + +++ +L+ V + ST + I ++
Sbjct: 153 KKLFTGDFIVDPHAALHKEQFTALVRDVKDSLRADGFLLSLTVLPNVNSTW-YFDIPALN 211
Query: 199 QYLNWVHVIT------------AEYSRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADK 246
+++V++ T A+YS P++ S N ++ + W +G ++K
Sbjct: 212 GLVDFVNLATFDFLTPARNPEEADYSAPIYHPDGSKDRLAHLNADFQVEYWLSQGFPSNK 271
Query: 247 LVLGLPCYGYAWTLVKPEDNGI----------GAAATGPALSDIGFVTYKEIKNYIKS-- 294
+ LG+ YG AW L K D+G+ G A G G ++Y EI + +
Sbjct: 272 INLGVATYGNAWKLTK--DSGLEGVPVVPETSGPAPEGFQSQKPGLLSYAEICGKLSNPQ 329
Query: 295 ----YGPNVPVMYNSTYVMNYCSIG----------KIWFGFDDVEAVRMKVAYAKEKKLR 340
G P+ S + I IW +DD ++ K AYA+ K L
Sbjct: 330 NQFLKGNESPLRRVSDPTKRFGGIAYRPVDGQITEGIWVSYDDPDSASNKAAYARVKNLG 389
Query: 341 GYFVWKVAYD 350
G ++ ++YD
Sbjct: 390 GVALFDLSYD 399
>pdb|1LL6|A Chain A, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|B Chain B, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|C Chain C, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|D Chain D, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 150/341 (43%), Gaps = 45/341 (13%)
Query: 41 SDVNSALFTHLMCGFADVNSTSYELSLS----------PSD--EKQFSNFTDTVK----- 83
D+ + FTH++ FA++ + E+ LS P D ++ +N +K
Sbjct: 22 QDLKADQFTHILYAFANIRPSG-EVYLSDTWADTDKHYPGDKWDEPGNNVYGCIKQMYLL 80
Query: 84 -KKNPSITTLLSIGG-GKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSW 141
K N ++ TLLSIGG +PN+ T AS RK F D+S+K+ + GF G+D++W +
Sbjct: 81 KKNNRNLKTLLSIGGWTYSPNFKT---PASTEEGRKKFADTSLKLMKDLGFDGIDINWEY 137
Query: 142 ANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYL 201
+ +L K R A+ + + + + +LT P + + +YL
Sbjct: 138 PEDEKQANDFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGP-QNYNKLKLAEMDKYL 196
Query: 202 NWVHVITAEYSRPMW---TNH-------TSAPAALVFNTEYGITAWTDEGLSADKLVLGL 251
++ +++ ++S W + H T+ P + F+++ + + G+ A+K+VLG+
Sbjct: 197 DFWNLMAYDFSG-SWDKVSGHMSNVFPSTTKPESTPFSSDKAVKDYIKAGVPANKIVLGM 255
Query: 252 PCYGYAWTLVKPEDNGIGAAATGPALS--DIGFVTYKEIKNYIKSYGPNVPVMYNSTYVM 309
P YG A+ +GIG + G + G YK+ + G V + +
Sbjct: 256 PLYGRAFAST----DGIGTSFNGVGGGSWENGVWDYKD----MPQQGAQVTELEDIAASY 307
Query: 310 NYCSIGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350
+Y + +D V+ K Y + + G W+ + D
Sbjct: 308 SYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSD 348
>pdb|1D2K|A Chain A, C. Immitis Chitinase 1 At 2.2 Angstroms Resolution
pdb|1LL4|A Chain A, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|B Chain B, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|C Chain C, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|D Chain D, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
Length = 392
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 149/341 (43%), Gaps = 45/341 (13%)
Query: 41 SDVNSALFTHLMCGFADVNSTSYELSLS----------PSD--EKQFSNFTDTVK----- 83
D+ + FTH++ FA++ + E+ LS P D ++ +N +K
Sbjct: 22 QDLKADQFTHILYAFANIRPSG-EVYLSDTWADTDKHYPGDKWDEPGNNVYGCIKQMYLL 80
Query: 84 -KKNPSITTLLSIGG-GKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSW 141
K N ++ TLLSIGG +PN+ T AS RK F D+S+K+ + GF G+D+ W +
Sbjct: 81 KKNNRNLKTLLSIGGWTYSPNFKT---PASTEEGRKKFADTSLKLMKDLGFDGIDIDWEY 137
Query: 142 ANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYL 201
+ +L K R A+ + + + + +LT P + + +YL
Sbjct: 138 PEDEKQANDFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGP-QNYNKLKLAEMDKYL 196
Query: 202 NWVHVITAEYSRPMW---TNH-------TSAPAALVFNTEYGITAWTDEGLSADKLVLGL 251
++ +++ ++S W + H T+ P + F+++ + + G+ A+K+VLG+
Sbjct: 197 DFWNLMAYDFSG-SWDKVSGHMSNVFPSTTKPESTPFSSDKAVKDYIKAGVPANKIVLGM 255
Query: 252 PCYGYAWTLVKPEDNGIGAAATGPALS--DIGFVTYKEIKNYIKSYGPNVPVMYNSTYVM 309
P YG A+ +GIG + G + G YK+ + G V + +
Sbjct: 256 PLYGRAFAST----DGIGTSFNGVGGGSWENGVWDYKD----MPQQGAQVTELEDIAASY 307
Query: 310 NYCSIGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350
+Y + +D V+ K Y + + G W+ + D
Sbjct: 308 SYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSD 348
>pdb|1LL7|A Chain A, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
pdb|1LL7|B Chain B, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 149/341 (43%), Gaps = 45/341 (13%)
Query: 41 SDVNSALFTHLMCGFADVNSTSYELSLS----------PSD--EKQFSNFTDTVK----- 83
D+ + FTH++ FA++ + E+ LS P D ++ +N +K
Sbjct: 22 QDLKADQFTHILYAFANIRPSG-EVYLSDTWADTDKHYPGDKWDEPGNNVYGCIKQMYLL 80
Query: 84 -KKNPSITTLLSIGG-GKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSW 141
K N ++ TLLSIGG +PN+ T AS RK F D+S+K+ + GF G+D+ W +
Sbjct: 81 KKNNRNLKTLLSIGGWTYSPNFKT---PASTEEGRKKFADTSLKLMKDLGFDGIDIDWQY 137
Query: 142 ANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYL 201
+ +L K R A+ + + + + +LT P + + +YL
Sbjct: 138 PEDEKQANDFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGP-QNYNKLKLAEMDKYL 196
Query: 202 NWVHVITAEYSRPMW---TNH-------TSAPAALVFNTEYGITAWTDEGLSADKLVLGL 251
++ +++ ++S W + H T+ P + F+++ + + G+ A+K+VLG+
Sbjct: 197 DFWNLMAYDFSG-SWDKVSGHMSNVFPSTTKPESTPFSSDKAVKDYIKAGVPANKIVLGM 255
Query: 252 PCYGYAWTLVKPEDNGIGAAATGPALS--DIGFVTYKEIKNYIKSYGPNVPVMYNSTYVM 309
P YG A+ +GIG + G + G YK+ + G V + +
Sbjct: 256 PLYGRAFAST----DGIGTSFNGVGGGSWENGVWDYKD----MPQQGAQVTELEDIAASY 307
Query: 310 NYCSIGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350
+Y + +D V+ K Y + + G W+ + D
Sbjct: 308 SYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSD 348
>pdb|1UR9|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR9|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
Length = 499
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/385 (21%), Positives = 157/385 (40%), Gaps = 84/385 (21%)
Query: 40 ISDVNSALFTHLMCGFADVNST---SYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIG 96
I+ + TH+ F D+NS +++ + + + + N +K NPS+ + SIG
Sbjct: 36 ITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIG 95
Query: 97 GGKNPN-----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNI 151
G N ++ Y + P+SR F S ++I + YGF G+D++W + + + I
Sbjct: 96 GWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEYPQAAEVDGFI 155
Query: 152 GILFKEWRAAVALEARNNSSQS-QLILTARVAYSPYSTIGAYS-IDSIRQYLNWVHVITA 209
L +E R + + + Q+ LT A + YS + I L++++++T
Sbjct: 156 AAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTY 214
Query: 210 EYSRPMWTNHTSAPAALVFNTEYGIT------------AWTD------------------ 239
+ + P W T+ AAL F G T +W +
Sbjct: 215 DLAGP-WEKVTNHQAAL-FGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQ 272
Query: 240 -----EGLSADKLVLGLPCYGYAWTLVKPEDNGIGAAATGPAL----------------- 277
EG+ + K+V+G+P YG A+ V + G ++ + P
Sbjct: 273 QHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECV 332
Query: 278 --SDIGFVTYKEIKNYIK-SYG--------PNVPVMYNSTYVMNYCSIGKIWFGFDDVEA 326
D +Y++++ ++ +YG P +Y++ ++ +DD E+
Sbjct: 333 RDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQ--------NGLFVTYDDAES 384
Query: 327 VRMKVAYAKEKKLRGYFVWKVAYDH 351
+ K Y K+++L G W + D+
Sbjct: 385 FKYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1OGB|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGB|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGG|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
pdb|1OGG|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
Length = 499
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/385 (21%), Positives = 157/385 (40%), Gaps = 84/385 (21%)
Query: 40 ISDVNSALFTHLMCGFADVNST---SYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIG 96
I+ + TH+ F D+NS +++ + + + + N +K NPS+ + SIG
Sbjct: 36 ITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIG 95
Query: 97 GGKNPN-----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNI 151
G N ++ Y + P+SR F S ++I + YGF G+D++W + + + I
Sbjct: 96 GWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEYPQAAEVDGFI 155
Query: 152 GILFKEWRAAVALEARNNSSQS-QLILTARVAYSPYSTIGAYS-IDSIRQYLNWVHVITA 209
L +E R + + + Q+ LT A + YS + I L++++++T
Sbjct: 156 AAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTY 214
Query: 210 EYSRPMWTNHTSAPAALVFNTEYGIT------------AWTD------------------ 239
+ + P W T+ AAL F G T +W +
Sbjct: 215 DLAGP-WEKVTNHQAAL-FGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQ 272
Query: 240 -----EGLSADKLVLGLPCYGYAWTLVKPEDNGIGAAATGPAL----------------- 277
EG+ + K+V+G+P YG A+ V + G ++ + P
Sbjct: 273 QHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECV 332
Query: 278 --SDIGFVTYKEIKNYIK-SYG--------PNVPVMYNSTYVMNYCSIGKIWFGFDDVEA 326
D +Y++++ ++ +YG P +Y++ ++ +DD E+
Sbjct: 333 RDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQ--------NGLFVTYDDAES 384
Query: 327 VRMKVAYAKEKKLRGYFVWKVAYDH 351
+ K Y K+++L G W + D+
Sbjct: 385 FKYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/385 (21%), Positives = 156/385 (40%), Gaps = 84/385 (21%)
Query: 40 ISDVNSALFTHLMCGFADVNST---SYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIG 96
I+ + TH+ F D+NS +++ + + + + N +K NPS+ + SIG
Sbjct: 35 ITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIG 94
Query: 97 GGKNPN-----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNI 151
G N ++ Y + P+SR F S ++I + YGF G+D+ W + + + I
Sbjct: 95 GWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYPQAAEVDGFI 154
Query: 152 GILFKEWRAAVALEARNNSSQS-QLILTARVAYSPYSTIGAYS-IDSIRQYLNWVHVITA 209
L +E R + + + Q+ LT A + YS + I L++++++T
Sbjct: 155 AAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTY 213
Query: 210 EYSRPMWTNHTSAPAALVFNTEYGIT------------AWTD------------------ 239
+ + P W T+ AAL F G T +W +
Sbjct: 214 DLAGP-WEKVTNHQAAL-FGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQ 271
Query: 240 -----EGLSADKLVLGLPCYGYAWTLVKPEDNGIGAAATGPAL----------------- 277
EG+ + K+V+G+P YG A+ V + G ++ + P
Sbjct: 272 QHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECV 331
Query: 278 --SDIGFVTYKEIKNYIK-SYG--------PNVPVMYNSTYVMNYCSIGKIWFGFDDVEA 326
D +Y++++ ++ +YG P +Y++ ++ +DD E+
Sbjct: 332 RDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQ--------NGLFVTYDDAES 383
Query: 327 VRMKVAYAKEKKLRGYFVWKVAYDH 351
+ K Y K+++L G W + D+
Sbjct: 384 FKYKAKYIKQQQLGGVMFWHLGQDN 408
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
Length = 499
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/385 (21%), Positives = 156/385 (40%), Gaps = 84/385 (21%)
Query: 40 ISDVNSALFTHLMCGFADVNST---SYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIG 96
I+ + TH+ F D+NS +++ + + + + N +K NPS+ + SIG
Sbjct: 36 ITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIG 95
Query: 97 GGKNPN-----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNI 151
G N ++ Y + P+SR F S ++I + YGF G+D+ W + + + I
Sbjct: 96 GWYYSNDLGVSHANYVNAVKTPASRTKFAQSCVRIMKDYGFDGVDIDWEYPQAAEVDGFI 155
Query: 152 GILFKEWRAAVALEARNNSSQS-QLILTARVAYSPYSTIGAYS-IDSIRQYLNWVHVITA 209
L +E R + + + Q+ LT A + YS + I L++++++T
Sbjct: 156 AAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTY 214
Query: 210 EYSRPMWTNHTSAPAALVFNTEYGIT------------AWTD------------------ 239
+ + P W T+ AAL F G T +W +
Sbjct: 215 DLAGP-WEKVTNHQAAL-FGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQ 272
Query: 240 -----EGLSADKLVLGLPCYGYAWTLVKPEDNGIGAAATGPAL----------------- 277
EG+ + K+V+G+P YG A+ V + G ++ + P
Sbjct: 273 QHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECV 332
Query: 278 --SDIGFVTYKEIKNYIK-SYG--------PNVPVMYNSTYVMNYCSIGKIWFGFDDVEA 326
D +Y++++ ++ +YG P +Y++ ++ +DD E+
Sbjct: 333 RDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQ--------NGLFVTYDDAES 384
Query: 327 VRMKVAYAKEKKLRGYFVWKVAYDH 351
+ K Y K+++L G W + D+
Sbjct: 385 FKYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1UR8|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR8|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1W1P|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1P|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1T|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1T|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1V|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1V|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1Y|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1W1Y|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1O6I|A Chain A, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4.
pdb|1O6I|B Chain B, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4
Length = 499
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/385 (21%), Positives = 156/385 (40%), Gaps = 84/385 (21%)
Query: 40 ISDVNSALFTHLMCGFADVNST---SYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIG 96
I+ + TH+ F D+NS +++ + + + + N +K NPS+ + SIG
Sbjct: 36 ITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIG 95
Query: 97 GGKNPN-----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNI 151
G N ++ Y + P+SR F S ++I + YGF G+D+ W + + + I
Sbjct: 96 GWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYPQAAEVDGFI 155
Query: 152 GILFKEWRAAVALEARNNSSQS-QLILTARVAYSPYSTIGAYS-IDSIRQYLNWVHVITA 209
L +E R + + + Q+ LT A + YS + I L++++++T
Sbjct: 156 AAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTY 214
Query: 210 EYSRPMWTNHTSAPAALVFNTEYGIT------------AWTD------------------ 239
+ + P W T+ AAL F G T +W +
Sbjct: 215 DLAGP-WEKVTNHQAAL-FGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQ 272
Query: 240 -----EGLSADKLVLGLPCYGYAWTLVKPEDNGIGAAATGPAL----------------- 277
EG+ + K+V+G+P YG A+ V + G ++ + P
Sbjct: 273 QHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECV 332
Query: 278 --SDIGFVTYKEIKNYIK-SYG--------PNVPVMYNSTYVMNYCSIGKIWFGFDDVEA 326
D +Y++++ ++ +YG P +Y++ ++ +DD E+
Sbjct: 333 RDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQ--------NGLFVTYDDAES 384
Query: 327 VRMKVAYAKEKKLRGYFVWKVAYDH 351
+ K Y K+++L G W + D+
Sbjct: 385 FKYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/385 (21%), Positives = 156/385 (40%), Gaps = 84/385 (21%)
Query: 40 ISDVNSALFTHLMCGFADVNST---SYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIG 96
I+ + TH+ F D+NS +++ + + + + N +K NPS+ + SIG
Sbjct: 36 ITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIG 95
Query: 97 GGKNPN-----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNI 151
G N ++ Y + P+SR F S ++I + YGF G+D+ W + + + I
Sbjct: 96 GWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWQYPQAAEVDGFI 155
Query: 152 GILFKEWRAAVALEARNNSSQS-QLILTARVAYSPYSTIGAYS-IDSIRQYLNWVHVITA 209
L +E R + + + Q+ LT A + YS + I L++++++T
Sbjct: 156 AAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTY 214
Query: 210 EYSRPMWTNHTSAPAALVFNTEYGIT------------AWTD------------------ 239
+ + P W T+ AAL F G T +W +
Sbjct: 215 DLAGP-WEKVTNHQAAL-FGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQ 272
Query: 240 -----EGLSADKLVLGLPCYGYAWTLVKPEDNGIGAAATGPAL----------------- 277
EG+ + K+V+G+P YG A+ V + G ++ + P
Sbjct: 273 QHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECV 332
Query: 278 --SDIGFVTYKEIKNYIK-SYG--------PNVPVMYNSTYVMNYCSIGKIWFGFDDVEA 326
D +Y++++ ++ +YG P +Y++ ++ +DD E+
Sbjct: 333 RDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQ--------NGLFVTYDDAES 384
Query: 327 VRMKVAYAKEKKLRGYFVWKVAYDH 351
+ K Y K+++L G W + D+
Sbjct: 385 FKYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
Length = 499
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 80/385 (20%), Positives = 156/385 (40%), Gaps = 84/385 (21%)
Query: 40 ISDVNSALFTHLMCGFADVNST---SYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIG 96
I+ + TH+ F D+NS +++ + + + + N +K NPS+ + SIG
Sbjct: 36 ITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIG 95
Query: 97 GGKNPN-----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNI 151
G N ++ Y + P+SR F S ++I + YGF G+++ W + + + I
Sbjct: 96 GWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVNIDWEYPQAAEVDGFI 155
Query: 152 GILFKEWRAAVALEARNNSSQS-QLILTARVAYSPYSTIGAYS-IDSIRQYLNWVHVITA 209
L +E R + + + Q+ LT A + YS + I L++++++T
Sbjct: 156 AAL-QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTY 214
Query: 210 EYSRPMWTNHTSAPAALVFNTEYGIT------------AWTD------------------ 239
+ + P W T+ AAL F G T +W +
Sbjct: 215 DLAGP-WEKVTNHQAAL-FGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQ 272
Query: 240 -----EGLSADKLVLGLPCYGYAWTLVKPEDNGIGAAATGPAL----------------- 277
EG+ + K+V+G+P YG A+ V + G ++ + P
Sbjct: 273 QHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECV 332
Query: 278 --SDIGFVTYKEIKNYIK-SYG--------PNVPVMYNSTYVMNYCSIGKIWFGFDDVEA 326
D +Y++++ ++ +YG P +Y++ ++ +DD E+
Sbjct: 333 RDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQ--------NGLFVTYDDAES 384
Query: 327 VRMKVAYAKEKKLRGYFVWKVAYDH 351
+ K Y K+++L G W + D+
Sbjct: 385 FKYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|3QOK|A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella
Pneumoniae
Length = 420
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 91/408 (22%), Positives = 152/408 (37%), Gaps = 93/408 (22%)
Query: 23 AQTLIRAGYWDSGDEFF------ISDVNSALFTHLMCGFA-----DVNSTS--------- 62
AQ L GY++ G + I ++ THL F + + T+
Sbjct: 23 AQPLXSVGYFNGGGDVTAGPGGDIDKLDVRQITHLNYSFGLIYNDEKDETNAALKDPAHL 82
Query: 63 YELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDS 122
+E+ LSP + ++K+NP + LLS+GG +S A+ SR FI S
Sbjct: 83 HEIWLSPKVQADLQKLP-ALRKQNPDLKVLLSVGGW---GARGFSGAAATAESRAVFIRS 138
Query: 123 SIKIARLYGFQGLDLSWSW-ANTSW--------DNYNIGILFKEWRAAVALEARNNSSQS 173
+ KI + YG G+DL W + N +W D N L K R AV
Sbjct: 139 AQKIIQQYGLDGIDLDWEFPVNGAWGLVASQPADRDNFTALLKSLREAVG---------E 189
Query: 174 QLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAE------------YSRPMWTNHTS 221
Q ++T V + S + ++ LN++++ T + Y W +
Sbjct: 190 QKLVTIAVGANAESPKSWVDVKAVAPVLNYINLXTYDXAYGTQYFNSNLYDSSHW---PT 246
Query: 222 APAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYA----------WTLVKPEDNGIGAA 271
AA ++ ++ + + GL + LG+ YG WT ++N +
Sbjct: 247 VAAADKYSADFVVNNYLAAGLKPSQXNLGIGFYGRVPKRAVEPGIDWTKADAQNNPVTQP 306
Query: 272 ATGPA-----------LSDIGFVTYKEI---------KNYIKSYGPNVPVMYNSTYVMNY 311
GP LS +V Y +I K + + + V + S
Sbjct: 307 YFGPQQIALFASLGYDLSKDTYVKYNDIVGKLLNDPQKRFTEHWDDEAKVPWLSV----Q 362
Query: 312 CSIGKIWFG--FDDVEAVRMKVAYAKEKKLRGYFVWKVAYDHDWMLSQ 357
+ GK F +++ +V +K Y K K L G W+ D L++
Sbjct: 363 SAEGKPLFALSYENPRSVAIKADYIKAKGLAGAXFWEYGADDQNQLAR 410
>pdb|3ARS|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure Of Mutant
W275g
pdb|3ART|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Dequalinium
pdb|3ARU|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Pentoxifylline
pdb|3AS0|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Sanguinarine
pdb|3AS1|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Chelerythrine
pdb|3AS2|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Propentofylline
pdb|3AS3|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With 2-(Imidazolin-
2-Yl)-5-Isothiocyanatobenzofuran
Length = 584
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 126/332 (37%), Gaps = 66/332 (19%)
Query: 82 VKKKNPSITTLLSIGGG--KNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGF-QGLDLS 138
+K++NP + + SIGGG +P Y +R +F+ S K + + F G+D+
Sbjct: 238 LKQRNPDLKIIPSIGGGTLSDPFYDFVDK-----KNRDTFVASVKKFLKTWKFYDGVDID 292
Query: 139 WSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIR 198
W + + G + A +AL +L Y S IG D I
Sbjct: 293 WEFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIGV-GYDKIE 351
Query: 199 --------QYLNWVHVITAEYSRPMWTNHTSAPAAL------------------------ 226
QY++++ +T ++ W N AL
Sbjct: 352 DVDYADAVQYMDYIFAMTYDFYG-GWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYK 410
Query: 227 --VFNTEYGITAWTDEGLSADKLVLGLPCYGYAW------TLVKPEDNGIGAA------A 272
+ + GI +G+ A+KLVLG YG W TL P D G A +
Sbjct: 411 GPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGS 470
Query: 273 TGPALSDIGFVTYKEIKNY--------IKSYGPNVPVMYNSTYVMNYCSIGKIWFGFDDV 324
T + + G + YK IK++ I + + +V N S G++ FDD
Sbjct: 471 TAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNR-STGEL-ITFDDH 528
Query: 325 EAVRMKVAYAKEKKLRGYFVWKVAYDHDWMLS 356
+V K YAK L G F W++ D+ +L+
Sbjct: 529 RSVLAKGNYAKSLGLAGLFSWEIDADNGDILN 560
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6L|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6N|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a In Complex With Allosamidin
Length = 563
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 127/314 (40%), Gaps = 61/314 (19%)
Query: 82 VKKKNPSITTLLSIGG--GKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGF-QGLDLS 138
+K+ +P + L SIGG +P + + R F+ S + + + F G+D+
Sbjct: 259 LKQAHPDLKILPSIGGWTLSDPFF-----FMGDKVKRDRFVGSVKEFLQTWKFFDGVDID 313
Query: 139 WSWANTSWDNYNIG---------ILFKEWRAAVALEARNNSSQSQLI--LTA------RV 181
W + N N+G +L KE RA + + + +L ++A +V
Sbjct: 314 WEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELTSAISAGKDKIDKV 373
Query: 182 AYS------------PYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFN 229
AY+ Y GA+ + ++ + P W T+ +
Sbjct: 374 AYNVAQNSMDHIFLMSYDFYGAFDLKNLGH--------QTALNAPAWKPDTA------YT 419
Query: 230 TEYGITAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNGI--GAAATGPALS--DIGFVTY 285
T G+ A +G+ K+V+G YG WT V N I ATGP + G V Y
Sbjct: 420 TVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDY 479
Query: 286 KEIKNYIKSYGPNVPVMYNSTYVMNYC---SIGKIWFGFDDVEAVRMKVAYAKEKKLRGY 342
++I + S Y++T Y S G + FDD +V+ K Y +K+L G
Sbjct: 480 RQIASQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGL 536
Query: 343 FVWKVAYDHDWMLS 356
F W++ D+ +L+
Sbjct: 537 FSWEIDADNGDILN 550
>pdb|2WLY|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline.
pdb|2WLZ|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline.
pdb|2WM0|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline Thioamide
Length = 548
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 127/314 (40%), Gaps = 61/314 (19%)
Query: 82 VKKKNPSITTLLSIGG--GKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGF-QGLDLS 138
+K+ +P + L SIGG +P + + R F+ S + + + F G+D+
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFF-----FMGDKVKRDRFVGSVKEFLQTWKFFDGVDID 290
Query: 139 WSWANTSWDNYNIG---------ILFKEWRAAVALEARNNSSQSQLI--LTA------RV 181
W + N N+G +L KE RA + + + +L ++A +V
Sbjct: 291 WEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELTSAISAGKDKIDKV 350
Query: 182 AYS------------PYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFN 229
AY+ Y GA+ + ++ + P W T+ +
Sbjct: 351 AYNVAQNSMDHIFLMSYDFYGAFDLKNLGH--------QTALNAPAWKPDTA------YT 396
Query: 230 TEYGITAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNGI--GAAATGPALS--DIGFVTY 285
T G+ A +G+ K+V+G YG WT V N I ATGP + G V Y
Sbjct: 397 TVNGVNALLTQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDY 456
Query: 286 KEIKNYIKSYGPNVPVMYNSTYVMNYC---SIGKIWFGFDDVEAVRMKVAYAKEKKLRGY 342
++I + S Y++T Y S G + FDD +V+ K Y +K+L G
Sbjct: 457 RQIASQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGL 513
Query: 343 FVWKVAYDHDWMLS 356
F W++ D+ +L+
Sbjct: 514 FSWEIDADNGDILN 527
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 127/316 (40%), Gaps = 65/316 (20%)
Query: 82 VKKKNPSITTLLSIGG--GKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGF-QGLDLS 138
+K+ +P + L SIGG +P + + R F+ S + + + F G+D++
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFF-----FMGDKVKRDRFVGSVKEFLQTWKFFDGVDIA 290
Query: 139 WSWANTSWDNYNIG---------ILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTI 189
W + N N+G +L KE RA + QL + Y S I
Sbjct: 291 WEFPGGKGANPNLGSPQDGETYVLLMKELRAML----------DQLSVETGRKYELTSAI 340
Query: 190 --GAYSIDSI-----RQYLNWVHVITAEY---------------SRPMWTNHTSAPAALV 227
G ID + + ++ + +++ ++ + P W T+
Sbjct: 341 SAGKDKIDKVAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTA------ 394
Query: 228 FNTEYGITAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNGI--GAAATGPALS--DIGFV 283
+ T G+ A +G+ K+V+G YG WT V N I ATGP + G V
Sbjct: 395 YTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIV 454
Query: 284 TYKEIKNYIKSYGPNVPVMYNSTYVMNYC---SIGKIWFGFDDVEAVRMKVAYAKEKKLR 340
Y++I S Y++T Y S G + FDD +V+ K Y +K+L
Sbjct: 455 DYRQIAGQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLG 511
Query: 341 GYFVWKVAYDHDWMLS 356
G F W++ D+ +L+
Sbjct: 512 GLFSWEIDADNGDILN 527
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3
Angstroms Resolution
Length = 540
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 129/309 (41%), Gaps = 51/309 (16%)
Query: 82 VKKKNPSITTLLSIGG--GKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGF-QGLDLS 138
+K+ +P + L SIGG +P + + R F+ S + + + F G+D+
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFF-----FMGDKVKRDRFVGSVKEFLQTWKFFDGVDID 290
Query: 139 WSWANTSWDNYNIG---------ILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTI 189
W + N N+G +L KE RA L+ + + + LT+ ++ + I
Sbjct: 291 WEFPGGKGANPNLGSPQDGETYVLLMKELRAM--LDQLSTETGRKYELTSAIS-AGKDKI 347
Query: 190 GAYSIDSIRQYLNWVHVITAEY---------------SRPMWTNHTSAPAALVFNTEYGI 234
+ + + ++ + +++ ++ + P W T+ + T G+
Sbjct: 348 DKVAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTA------YTTVNGV 401
Query: 235 TAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNGI--GAAATGPALS--DIGFVTYKEIKN 290
A +G+ K+V+G YG WT V N I ATGP + G V Y++I
Sbjct: 402 NALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAG 461
Query: 291 YIKSYGPNVPVMYNSTYVMNYC---SIGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKV 347
S Y++T Y S G + FDD +V+ K Y +K+L G F W++
Sbjct: 462 QFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWEI 518
Query: 348 AYDHDWMLS 356
D+ +L+
Sbjct: 519 DADNGDILN 527
>pdb|2WK2|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline Dithioamide
Length = 540
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 127/314 (40%), Gaps = 61/314 (19%)
Query: 82 VKKKNPSITTLLSIGG--GKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGF-QGLDLS 138
+K+ +P + L SIGG +P + + R F+ S + + + F G+D+
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFF-----FMGDKVKRDRFVGSVKEFLQTWKFFDGVDID 290
Query: 139 WSWANTSWDNYNIG---------ILFKEWRAAVALEARNNSSQSQLI--LTA------RV 181
W + N N+G +L KE RA + + + +L ++A +V
Sbjct: 291 WEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELTSAISAGKDKIDKV 350
Query: 182 AYS------------PYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFN 229
AY+ Y GA+ + ++ + P W T+ +
Sbjct: 351 AYNVAQNSMDHIFLMSYDFYGAFDLKNLGH--------QTALNAPAWKPDTA------YT 396
Query: 230 TEYGITAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNGI--GAAATGPALS--DIGFVTY 285
T G+ A +G+ K+V+G YG WT V N I ATGP + G V Y
Sbjct: 397 TVNGVNALLTQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDY 456
Query: 286 KEIKNYIKSYGPNVPVMYNSTYVMNYC---SIGKIWFGFDDVEAVRMKVAYAKEKKLRGY 342
++I + S Y++T Y S G + FDD +V+ K Y +K+L G
Sbjct: 457 RQIASQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGL 513
Query: 343 FVWKVAYDHDWMLS 356
F W++ D+ +L+
Sbjct: 514 FSWEIDADNGDILN 527
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed
With Hexa-n- Acetylchitohexaose (nag)6
Length = 540
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 126/316 (39%), Gaps = 65/316 (20%)
Query: 82 VKKKNPSITTLLSIGG--GKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGF-QGLDLS 138
+K+ +P + L SIGG +P + + R F+ S + + + F G+D+
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFF-----FMGDKVKRDRFVGSVKEFLQTWKFFDGVDID 290
Query: 139 WSWANTSWDNYNIG---------ILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTI 189
W + N N+G +L KE RA + QL + Y S I
Sbjct: 291 WEFPGGKGANPNLGSPQDGETYVLLMKELRAML----------DQLSVETGRKYELTSAI 340
Query: 190 --GAYSIDSI-----RQYLNWVHVITAEY---------------SRPMWTNHTSAPAALV 227
G ID + + ++ + +++ ++ + P W T+
Sbjct: 341 SAGKDKIDKVAYNVAQNSMDHIFLMSFDFYGAFDLKNLGHQTALNAPAWKPDTA------ 394
Query: 228 FNTEYGITAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNGI--GAAATGPALS--DIGFV 283
+ T G+ A +G+ K+V+G YG WT V N I ATGP + G V
Sbjct: 395 YTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIV 454
Query: 284 TYKEIKNYIKSYGPNVPVMYNSTYVMNYC---SIGKIWFGFDDVEAVRMKVAYAKEKKLR 340
Y++I S Y++T Y S G + FDD +V+ K Y +K+L
Sbjct: 455 DYRQIAGQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLG 511
Query: 341 GYFVWKVAYDHDWMLS 356
G F W++ D+ +L+
Sbjct: 512 GLFSWEIDADNGDILN 527
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 126/316 (39%), Gaps = 65/316 (20%)
Query: 82 VKKKNPSITTLLSIGG--GKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGF-QGLDLS 138
+K+ +P + L SIGG +P + + R F+ S + + + F G+D+
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFF-----FMGDKVKRDRFVGSVKEFLQTWKFFDGVDID 290
Query: 139 WSWANTSWDNYNIG---------ILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTI 189
W + N N+G +L KE RA + QL + Y S I
Sbjct: 291 WQFPGGKGANPNLGSPQDGETYVLLMKELRAML----------DQLSVETGRKYELTSAI 340
Query: 190 --GAYSIDSI-----RQYLNWVHVITAEY---------------SRPMWTNHTSAPAALV 227
G ID + + ++ + +++ ++ + P W T+
Sbjct: 341 SAGKDKIDKVAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTA------ 394
Query: 228 FNTEYGITAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNGI--GAAATGPALS--DIGFV 283
+ T G+ A +G+ K+V+G YG WT V N I ATGP + G V
Sbjct: 395 YTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIV 454
Query: 284 TYKEIKNYIKSYGPNVPVMYNSTYVMNYC---SIGKIWFGFDDVEAVRMKVAYAKEKKLR 340
Y++I S Y++T Y S G + FDD +V+ K Y +K+L
Sbjct: 455 DYRQIAGQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLG 511
Query: 341 GYFVWKVAYDHDWMLS 356
G F W++ D+ +L+
Sbjct: 512 GLFSWEIDADNGDILN 527
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At
1.55 Angstroms
pdb|1FFQ|A Chain A, Crystal Structure Of Chitinase A Complexed With
Allosamidin
Length = 540
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 126/316 (39%), Gaps = 65/316 (20%)
Query: 82 VKKKNPSITTLLSIGG--GKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGF-QGLDLS 138
+K+ +P + L SIGG +P + + R F+ S + + + F G+D+
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFF-----FMGDKVKRDRFVGSVKEFLQTWKFFDGVDID 290
Query: 139 WSWANTSWDNYNIG---------ILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTI 189
W + N N+G +L KE RA + QL + Y S I
Sbjct: 291 WEFPGGKGANPNLGSPQDGETYVLLMKELRAML----------DQLSVETGRKYELTSAI 340
Query: 190 --GAYSIDSI-----RQYLNWVHVITAEY---------------SRPMWTNHTSAPAALV 227
G ID + + ++ + +++ ++ + P W T+
Sbjct: 341 SAGKDKIDKVAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTA------ 394
Query: 228 FNTEYGITAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNGI--GAAATGPALS--DIGFV 283
+ T G+ A +G+ K+V+G YG WT V N I ATGP + G V
Sbjct: 395 YTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIV 454
Query: 284 TYKEIKNYIKSYGPNVPVMYNSTYVMNYC---SIGKIWFGFDDVEAVRMKVAYAKEKKLR 340
Y++I S Y++T Y S G + FDD +V+ K Y +K+L
Sbjct: 455 DYRQIAGQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLG 511
Query: 341 GYFVWKVAYDHDWMLS 356
G F W++ D+ +L+
Sbjct: 512 GLFSWEIDADNGDILN 527
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose
Length = 540
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 127/314 (40%), Gaps = 61/314 (19%)
Query: 82 VKKKNPSITTLLSIGG--GKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGF-QGLDLS 138
+K+ +P + L SIGG +P + + R F+ S + + + F G+D+
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFF-----FMGDKVKRDRFVGSVKEFLQTWKFFDGVDID 290
Query: 139 WSWANTSWDNYNIG---------ILFKEWRAAVALEARNNSSQSQLI--LTA------RV 181
W + N N+G +L KE RA + + + +L ++A +V
Sbjct: 291 WEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKV 350
Query: 182 AYS------------PYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFN 229
AY+ Y+ GA+ + ++ + P W T+ +
Sbjct: 351 AYNVAQNSMDHIFLMSYAFYGAFDLKNLGH--------QTALNAPAWKPDTA------YT 396
Query: 230 TEYGITAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNGI--GAAATGPALS--DIGFVTY 285
T G+ A +G+ K+V+G YG WT V N I ATGP + G V Y
Sbjct: 397 TVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDY 456
Query: 286 KEIKNYIKSYGPNVPVMYNSTYVMNYC---SIGKIWFGFDDVEAVRMKVAYAKEKKLRGY 342
++I S Y++T Y S G + FDD +V+ K Y +K+L G
Sbjct: 457 RQIAGQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGL 513
Query: 343 FVWKVAYDHDWMLS 356
F W++ D+ +L+
Sbjct: 514 FSWEIDADNGDILN 527
>pdb|1NH6|A Chain A, Structure Of S. Marcescens Chitinase A, E315l, Complex
With Hexasaccharide
Length = 540
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 127/316 (40%), Gaps = 65/316 (20%)
Query: 82 VKKKNPSITTLLSIGG--GKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGF-QGLDLS 138
+K+ +P + L SIGG +P + + R F+ S + + + F G+D+
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFF-----FMGDKVKRDRFVGSVKEFLQTWKFFDGVDID 290
Query: 139 WSWANTSWDNYNIG---------ILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTI 189
W + N N+G +L KE RA + QL + Y S I
Sbjct: 291 WLFPGGKGANPNLGSPQDGETYVLLMKELRAML----------DQLSVETGRKYELTSAI 340
Query: 190 --GAYSIDSI-----RQYLNWVHVITAEY---------------SRPMWTNHTSAPAALV 227
G ID + + ++ + +++ ++ + P W T+
Sbjct: 341 SAGKDKIDKVAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTA------ 394
Query: 228 FNTEYGITAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNGI--GAAATGPALS--DIGFV 283
+ T G+ A +G+ K+V+G YG WT V N I ATGP + G V
Sbjct: 395 YTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIV 454
Query: 284 TYKEIKNYIKSYGPNVPVMYNSTYVMNYC---SIGKIWFGFDDVEAVRMKVAYAKEKKLR 340
Y++I + S Y++T Y S G + FDD +V+ K Y +K+L
Sbjct: 455 DYRQIASQFMS--GEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLG 511
Query: 341 GYFVWKVAYDHDWMLS 356
G F W++ D+ +L+
Sbjct: 512 GLFSWEIDADNGDILN 527
>pdb|3B8S|A Chain A, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3B8S|B Chain B, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3ARO|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure
pdb|3ARP|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Dequalinium
pdb|3ARQ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Idarubicin
pdb|3ARR|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Pentoxifylline
pdb|3ARV|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Sanguinarine
pdb|3ARW|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Chelerythrine
pdb|3ARX|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Propentofylline
pdb|3ARY|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
pdb|3ARZ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
Length = 584
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 125/332 (37%), Gaps = 66/332 (19%)
Query: 82 VKKKNPSITTLLSIGG--GKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGF-QGLDLS 138
+K++NP + + SIGG +P Y +R +F+ S K + + F G+D+
Sbjct: 238 LKQRNPDLKIIPSIGGWTLSDPFYDFVDK-----KNRDTFVASVKKFLKTWKFYDGVDID 292
Query: 139 WSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIR 198
W + + G + A +AL +L Y S IG D I
Sbjct: 293 WEFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIGV-GYDKIE 351
Query: 199 --------QYLNWVHVITAEYSRPMWTNHTSAPAAL------------------------ 226
QY++++ +T ++ W N AL
Sbjct: 352 DVDYADAVQYMDYIFAMTYDFYG-GWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYK 410
Query: 227 --VFNTEYGITAWTDEGLSADKLVLGLPCYGYAW------TLVKPEDNGIGAA------A 272
+ + GI +G+ A+KLVLG YG W TL P D G A +
Sbjct: 411 GPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGS 470
Query: 273 TGPALSDIGFVTYKEIKNY--------IKSYGPNVPVMYNSTYVMNYCSIGKIWFGFDDV 324
T + + G + YK IK++ I + + +V N S G++ FDD
Sbjct: 471 TAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNR-STGEL-ITFDDH 528
Query: 325 EAVRMKVAYAKEKKLRGYFVWKVAYDHDWMLS 356
+V K YAK L G F W++ D+ +L+
Sbjct: 529 RSVLAKGNYAKSLGLAGLFSWEIDADNGDILN 560
>pdb|3B9A|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Hexasaccharide
pdb|3B9D|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Pentasaccharide
pdb|3B9E|A Chain A, Crystal Structure Of Inactive Mutant E315m Chitinase A
From Vibrio Harveyi
Length = 584
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 125/332 (37%), Gaps = 66/332 (19%)
Query: 82 VKKKNPSITTLLSIGG--GKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGF-QGLDLS 138
+K++NP + + SIGG +P Y +R +F+ S K + + F G+D+
Sbjct: 238 LKQRNPDLKIIPSIGGWTLSDPFYDFVDK-----KNRDTFVASVKKFLKTWKFYDGVDID 292
Query: 139 WSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIR 198
W + + G + A +AL +L Y S IG D I
Sbjct: 293 WMFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIGV-GYDKIE 351
Query: 199 --------QYLNWVHVITAEYSRPMWTNHTSAPAAL------------------------ 226
QY++++ +T ++ W N AL
Sbjct: 352 DVDYADAVQYMDYIFAMTYDFYG-GWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYK 410
Query: 227 --VFNTEYGITAWTDEGLSADKLVLGLPCYGYAW------TLVKPEDNGIGAA------A 272
+ + GI +G+ A+KLVLG YG W TL P D G A +
Sbjct: 411 GPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGS 470
Query: 273 TGPALSDIGFVTYKEIKNY--------IKSYGPNVPVMYNSTYVMNYCSIGKIWFGFDDV 324
T + + G + YK IK++ I + + +V N S G++ FDD
Sbjct: 471 TAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNR-STGEL-ITFDDH 528
Query: 325 EAVRMKVAYAKEKKLRGYFVWKVAYDHDWMLS 356
+V K YAK L G F W++ D+ +L+
Sbjct: 529 RSVLAKGNYAKSLGLAGLFSWEIDADNGDILN 560
>pdb|1KFW|A Chain A, Structure Of Catalytic Domain Of Psychrophilic Chitinase B
From Arthrobacter Tad20
Length = 435
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 71/326 (21%), Positives = 125/326 (38%), Gaps = 69/326 (21%)
Query: 82 VKKKNPSITTLLSIGG---GKNPNYSTYSSMASNPSSRKSFIDSSI------KIARLYG- 131
+K KNP + ++S+GG KN +S A+ +SR+ + S I + G
Sbjct: 111 LKAKNPKLKVMISLGGWTWSKN-----FSKAAATEASRQKLVSSCIDLYIKGNLPNFEGR 165
Query: 132 ---------FQGLDLSWSWANTSW-----------DNYNIGILFKEWRAAVALEARNNSS 171
F G+D+ W W T+ D N L E+R L+A +++
Sbjct: 166 GGAGAAAGIFDGIDIDWEWPGTNSGLAGNGVDTVNDRANFKALLAEFRKQ--LDAYGSTN 223
Query: 172 QSQLILTARVAYSP-------------YSTIGAYSIDSIRQYLNWVHVITAE----YSRP 214
+ +L+A + +P + ++ SI + W +T Y P
Sbjct: 224 NKKYVLSAFLPANPADIDAGGWDDPANFKSLDFGSIQGYDLHGAWNPTLTGHQANLYDDP 283
Query: 215 MWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNGIGAAATG 274
AP+ F+ + + + G+ +L LGL YG WT K + G
Sbjct: 284 A---DPRAPSK-KFSADKAVKKYLAAGIDPKQLGLGLAAYGRGWTGAK------NVSPWG 333
Query: 275 PALSDIG--FVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGKIWFGFDDVEAVRMKVA 332
PA + T E + +K+ G + Y++ + G W+ +D++ + K
Sbjct: 334 PATDGAPGTYETANEDYDKLKTLGTD---HYDAATGSAWRYDGTQWWSYDNIATTKQKTD 390
Query: 333 YAKEKKLRGYFVWKVAYDHDWMLSQA 358
Y K L G W+++ D + L A
Sbjct: 391 YIVSKGLGGGMWWELSGDRNGELVGA 416
>pdb|3CO4|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
pdb|3FND|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
Length = 312
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 89/215 (41%), Gaps = 30/215 (13%)
Query: 48 FTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYS 107
TH+ FA V + L+++P K+ + +T K N I L+S+ ++T
Sbjct: 29 LTHINASFARVKADG-TLNINPV-RKRIESVRETAHKHNVKI--LISLAKNSPGEFTT-- 82
Query: 108 SMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEAR 167
++P +RK I I + Y G D+ + + +WD N L R + +
Sbjct: 83 -AINDPKARKELIQQIIAFTKEYKLDGFDIDYEEYD-NWDK-NFPSLLVFARGLYLAKEK 139
Query: 168 NNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAA-- 225
N L S + G QY +++++ + Y R +T+ A+
Sbjct: 140 N-------XLXTCAVNSRWLNYGT----EWEQYFDYINLXS--YDRGAFTDKPVQHASYD 186
Query: 226 -LVFNTEYGITAWTDE-GLSADKLVLGLPCYGYAW 258
V + +Y W ++ S K+V GLP YGY+W
Sbjct: 187 DFVKDLKY----WNEQCRASKSKIVGGLPFYGYSW 217
>pdb|4ANV|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 168 NNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALV 227
N SQL + RV Y P GA +I+ + + A +P+W A +
Sbjct: 634 ENLQNSQLPESFRVPYDPGLKAGALAIEKCK--------VMASKKKPLWLEFKCADPTAL 685
Query: 228 FNTEYGITAWTDEGLSADKLVLGL 251
N GI + L D L+L +
Sbjct: 686 SNETIGIIFKHGDDLRQDMLILQI 709
>pdb|4ANX|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 168 NNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALV 227
N SQL + RV Y P GA +I+ + + A +P+W A +
Sbjct: 634 ENLQNSQLPESFRVPYDPGLKAGALAIEKCK--------VMASKKKPLWLEFKCADPTAL 685
Query: 228 FNTEYGITAWTDEGLSADKLVLGL 251
N GI + L D L+L +
Sbjct: 686 SNETIGIIFKHGDDLRQDMLILQI 709
>pdb|4ANU|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors.
pdb|4ANW|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 168 NNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALV 227
N SQL + RV Y P GA +I+ + + A +P+W A +
Sbjct: 634 ENLQNSQLPESFRVPYDPGLKAGALAIEKCK--------VMASKKKPLWLEFKCADPTAL 685
Query: 228 FNTEYGITAWTDEGLSADKLVLGL 251
N GI + L D L+L +
Sbjct: 686 SNETIGIIFKHGDDLRQDMLILQI 709
>pdb|3APC|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5132799
pdb|3APD|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5108134
pdb|3APF|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5039699
Length = 966
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 168 NNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALV 227
N SQL + RV Y P GA +I+ + + A +P+W A +
Sbjct: 636 ENLQNSQLPESFRVPYDPGLKAGALAIEKCK--------VMASKKKPLWLEFKCADPTAL 687
Query: 228 FNTEYGITAWTDEGLSADKLVLGL 251
N GI + L D L+L +
Sbjct: 688 SNETIGIIFKHGDDLRQDMLILQI 711
>pdb|3NZS|A Chain A, Structure-Based Optimization Of Pyrazolo -Pyrimidine And
-Pyridine Inhibitors Of Pi3-Kinase
pdb|3NZU|A Chain A, Structure-Based Optimization Of Pyrazolo -Pyrimidine And
-Pyridine Inhibitors Of Pi3-Kinase
Length = 954
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 168 NNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALV 227
N SQL + RV Y P GA +I+ + + A +P+W A +
Sbjct: 626 ENLQNSQLPESFRVPYDPGLKAGALAIEKCK--------VMASKKKPLWLEFKCADPTAL 677
Query: 228 FNTEYGITAWTDEGLSADKLVLGL 251
N GI + L D L+L +
Sbjct: 678 SNETIGIIFKHGDDLRQDMLILQI 701
>pdb|4DK5|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With A
Pyridyl- Triazine Inhibitor
Length = 959
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 168 NNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALV 227
N SQL + RV Y P GA +I+ + + A +P+W A +
Sbjct: 629 ENLQNSQLPESFRVPYDPGLKAGALAIEKCK--------VMASKKKPLWLEFKCADPTAL 680
Query: 228 FNTEYGITAWTDEGLSADKLVLGL 251
N GI + L D L+L +
Sbjct: 681 SNETIGIIFKHGDDLRQDMLILQI 704
>pdb|3DBS|A Chain A, Structure Of Pi3k Gamma In Complex With Gdc0941
pdb|3L13|A Chain A, Crystal Structures Of Pan-Pi3-Kinase And Dual
Pan-Pi3-KinaseMTOR Inhibitors
pdb|4AOF|A Chain A, Selective Small Molecule Inhibitor Discovered By
Chemoproteomic Assay Platform Reveals Regulation Of Th17
Cell Differentiation By Pi3kgamma
Length = 960
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 168 NNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALV 227
N SQL + RV Y P GA +I+ + + A +P+W A +
Sbjct: 630 ENLQNSQLPESFRVPYDPGLKAGALAIEKCK--------VMASKKKPLWLEFKCADPTAL 681
Query: 228 FNTEYGITAWTDEGLSADKLVLGL 251
N GI + L D L+L +
Sbjct: 682 SNETIGIIFKHGDDLRQDMLILQI 705
>pdb|3CST|A Chain A, Crystal Structure Of Pi3k P110gamma Catalytical Domain In
Complex With Organoruthenium Inhibitor E5e2
pdb|3CSF|A Chain A, Crystal Structure Of Pi3k P110gamma Catalytical Domain In
Complex With Organoruthenium Inhibitor Dw2
pdb|3L16|A Chain A, Discovery Of (Thienopyrimidin-2-Yl)aminopyrimidines As
Potent, Selective, And Orally Available Pan-Pi3-Kinase
And Dual Pan-Pi3- KinaseMTOR INHIBITORS FOR THE
TREATMENT OF CANCER
pdb|3L17|A Chain A, Discovery Of (Thienopyrimidin-2-Yl)aminopyrimidines As
Potent, Selective, And Orally Available Pan-Pi3-Kinase
And Dual Pan-Pi3- KinaseMTOR INHIBITORS FOR THE
TREATMENT OF CANCER
pdb|3L08|A Chain A, Structure Of Pi3k Gamma With A Potent Inhibitor:
Gsk2126458
pdb|3OAW|A Chain A, 4-Methylpteridineones As Orally Active And Selective
Pi3kMTOR DUAL Inhibitors
pdb|3PRE|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding
Scaffold (Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3PRZ|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding
Scaffold (Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3PS6|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding
Scaffold (Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3R7Q|A Chain A, Structure-Based Design Of Thienobenzoxepin Inhibitors Of
Pi3- Kinase
pdb|3R7R|A Chain A, Structure-Based Design Of Thienobenzoxepin Inhibitors Of
Pi3-Kinase
pdb|3ZVV|A Chain A, Fragment Bound To Pi3kinase Gamma
pdb|3ZW3|A Chain A, Fragment Based Discovery Of A Novel And Selective Pi3
Kinase Inhibitor
pdb|3TL5|A Chain A, Discovery Of Gdc-0980: A Potent, Selective, And Orally
Available Class I Phosphatidylinositol 3-Kinase
(Pi3k)MAMMALIAN TARGET OF RAPAMYCIN (Mtor) Kinase
Inhibitor For The Treatment Of Cancer
pdb|3T8M|A Chain A, Rational Design Of Pi3k-Alpha Inhibitors That Exhibit
Selectivity Over The Pi3k-Beta Isoform
pdb|4GB9|A Chain A, Potent And Highly Selective Benzimidazole Inhibitors Of
Pi3k-Delta
pdb|4G11|A Chain A, X-Ray Structure Of Pi3k-Gamma Bound To A
4-(Morpholin-4-Yl)- (6-Oxo-1,
6-Dihydropyrimidin-2-Yl)amide Inhibitor
pdb|4HLE|A Chain A, Compound 21 (1-alkyl-substituted 1,2,4-triazoles)
Length = 966
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 168 NNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALV 227
N SQL + RV Y P GA +I+ + + A +P+W A +
Sbjct: 630 ENLQNSQLPESFRVPYDPGLKAGALAIEKCK--------VMASKKKPLWLEFKCADPTAL 681
Query: 228 FNTEYGITAWTDEGLSADKLVLGL 251
N GI + L D L+L +
Sbjct: 682 SNETIGIIFKHGDDLRQDMLILQI 705
>pdb|1E8Y|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E8Z|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|2A4Z|A Chain A, Crystal Structure Of Human Pi3kgamma Complexed With
As604850
pdb|2A5U|A Chain A, Crystal Structure Of Human Pi3kgamma Complexed With
As605240
pdb|2CHW|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role
For P110 Alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-39
pdb|2CHX|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role
For P110alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-90
pdb|2CHZ|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role
For P110alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-93
pdb|3DPD|A Chain A, Achieving Multi-Isoform Pi3k Inhibition In A Series Of
Substituted 3,4-Dihydro-2h-Benzo[1,4]oxazines
pdb|2V4L|A Chain A, Complex Of Human Phosphoinositide 3-kinase Catalytic
Subunit Gamma (p110 Gamma) With Pik-284
pdb|3IBE|A Chain A, Crystal Structure Of A Pyrazolopyrimidine Inhibitor Bound
To Pi3 Kinase Gamma
pdb|3LJ3|A Chain A, Pi3-Kinase-Gamma With A Pyrrolopyridine-Benzofuran
Inhibitor
pdb|3ML8|A Chain A, Discovery Of The Highly Potent Pi3kMTOR DUAL INHIBITOR
PF-0 Through Structure Based Drug Design
pdb|3ML9|A Chain A, Discovery Of The Highly Potent Pi3kMTOR DUAL INHIBITOR
PF-0 Through Structure Based Drug Design
pdb|3MJW|A Chain A, Pi3 Kinase Gamma With A Benzofuranone Inhibitor
pdb|3P2B|A Chain A, Crystal Structure Of Pi3k Gamma With
3-(2-Morpholino-6-(Pyridin-3-
Ylamino)pyrimidin-4-Yl)phenol
pdb|3SD5|A Chain A, Crystal Structure Of Pi3k Gamma With
5-(2,4-Dimorpholinopyrimidin-6-
Yl)-4-(Trifluoromethyl)pyridin-2-Amine
pdb|3TJP|A Chain A, Crystal Structure Of Pi3k Gamma With
N6-(3,4-Dimethoxyphenyl)-2-
Morpholino-[4,5'-Bipyrimidine]-2',6-Diamine
pdb|4FUL|A Chain A, Pi3 Kinase Gamma Bound To A Pyrmidine Inhibitor
Length = 966
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 168 NNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALV 227
N SQL + RV Y P GA +I+ + + A +P+W A +
Sbjct: 630 ENLQNSQLPESFRVPYDPGLKAGALAIEKCK--------VMASKKKPLWLEFKCADPTAL 681
Query: 228 FNTEYGITAWTDEGLSADKLVLGL 251
N GI + L D L+L +
Sbjct: 682 SNETIGIIFKHGDDLRQDMLILQI 705
>pdb|1HE8|A Chain A, Ras G12v-Pi 3-Kinase Gamma Complex
Length = 965
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 168 NNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALV 227
N SQL + RV Y P GA +I+ + + A +P+W A +
Sbjct: 629 ENLQNSQLPESFRVPYDPGLKAGALAIEKCK--------VMASKKKPLWLEFKCADPTAL 680
Query: 228 FNTEYGITAWTDEGLSADKLVLGL 251
N GI + L D L+L +
Sbjct: 681 SNETIGIIFKHGDDLRQDMLILQI 704
>pdb|3QAQ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Triazine-Benzimidazole 1
pdb|3QAR|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Triazine-Benzimidazole 32
pdb|3QJZ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Benzothiazole 1
pdb|3QK0|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Benzothiazole 82
pdb|3S2A|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With A
Quinoline Inhibitor
pdb|4FHJ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Imidazopyridine 2
pdb|4F1S|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With A
Pyridyl- Triazine-Sulfonamide Inhibitor
pdb|4FLH|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Amg511
pdb|4FJY|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Quinoline-Indoline Inhibitor 24f
pdb|4FJZ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Pyrrolo-Pyridine Inhibitor 63
Length = 960
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 168 NNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALV 227
N SQL + RV Y P GA +I+ + + A +P+W A +
Sbjct: 630 ENLQNSQLPESFRVPYDPGLKAGALAIEKCK--------VMASKKKPLWLEFKCADPTAL 681
Query: 228 FNTEYGITAWTDEGLSADKLVLGL 251
N GI + L D L+L +
Sbjct: 682 SNETIGIIFKHGDDLRQDMLILQI 705
>pdb|3ENE|A Chain A, Complex Of Pi3k Gamma With An Inhibitor
Length = 959
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 168 NNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALV 227
N SQL + RV Y P GA +I+ + + A +P+W A +
Sbjct: 629 ENLQNSQLPESFRVPYDPGLKAGALAIEKCK--------VMASKKKPLWLEFKCADPTAL 680
Query: 228 FNTEYGITAWTDEGLSADKLVLGL 251
N GI + L D L+L +
Sbjct: 681 SNETIGIIFKHGDDLRQDMLILQI 704
>pdb|3CZ8|A Chain A, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
pdb|3CZ8|B Chain B, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
Length = 319
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 50/265 (18%), Positives = 104/265 (39%), Gaps = 29/265 (10%)
Query: 89 ITTLLSIGGGKNPNYST--YSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSW 146
+T L +I + +ST + +NP++R + +++ + G+ G+ + + + +
Sbjct: 67 VTPLATITNLTSGGFSTEIVHQVLNNPTARTNLVNNIYDLVSTRGYGGVTIDFEQVSAAD 126
Query: 147 DNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIG---AYSIDSIRQYLNW 203
+ G L + R+ +LT V I Y I +N+
Sbjct: 127 RDLFTGFL---------RQLRDRLQAGGYVLTIAVPAKTSDNIPWLRGYDYGGIGAVVNY 177
Query: 204 VHVITAEYSRPMWTNHTSAPAALVFNTEYGIT-AWTDEGLSADKLVLGLPCYGYAWTLVK 262
+ ++ + W + S P + TE T +T + + K+++G+P YGY W +
Sbjct: 178 MFIMAYD-----WHHAGSEPGPVAPITEIRRTIEFTIAQVPSRKIIIGVPLYGYDWII-- 230
Query: 263 PEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGKIWFGFD 322
P G A+A + + Y+ Y Y P Y ++W F+
Sbjct: 231 PYQPGTVASAISNQNAIERAMRYQAPIQYSAEY--QSPFF---RYSDQQGRTHEVW--FE 283
Query: 323 DVEAVRMKVAYAKEKKLRGYFVWKV 347
V ++ K+ +E +L+ W++
Sbjct: 284 GVRSMSRKMQIVREYRLQAIGAWQL 308
>pdb|4A5Q|A Chain A, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|B Chain B, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|C Chain C, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|D Chain D, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|E Chain E, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
Length = 546
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 311 YCSIGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYDHDWMLSQAA 359
Y K++ D +VR K Y K+K L G F+W D+ +L+ AA
Sbjct: 456 YSEATKVFISLDTPRSVRDKGRYVKDKGLGGLFIWSGDQDN-GILTNAA 503
>pdb|3OA5|A Chain A, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
pdb|3OA5|B Chain B, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
Length = 574
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 311 YCSIGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYDHDWMLSQAA 359
Y K++ D +VR K Y K+K L G F+W D+ +L+ AA
Sbjct: 484 YSEATKVFISLDTPRSVRDKGRYVKDKGLGGLFIWSGDQDN-GILTNAA 531
>pdb|3EBV|A Chain A, Crystal Structure Of Putative Chitinase A From
Streptomyces Coelicolor
Length = 302
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
Query: 40 ISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFT------DTVKKKNPSITTLL 93
ISDV SA + + FAD +T ++ + D +T D K+ ++
Sbjct: 23 ISDVPSA-YDIIAVAFADATTTPGAVTFN-LDSAGLGGYTVDQFKADVRAKQAAGKKVII 80
Query: 94 SIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDL 137
S+GG K S+ A+N F +S + R YGF G+D+
Sbjct: 81 SVGGEKGTVSVNSSASATN------FANSVYSVXREYGFDGVDI 118
>pdb|3TLY|A Chain A, Microcin C7 Self Immunity Protein Mccf Active Site Mutant
S118aN220AK247A IN THE APO STATE
pdb|3TLY|B Chain B, Microcin C7 Self Immunity Protein Mccf Active Site Mutant
S118aN220AK247A IN THE APO STATE
Length = 371
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 86 NPSITTLLSIGGGKNPN----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGL 135
NP IT ++S GG N N + Y ++ +NP + D++ +A +Y GL
Sbjct: 107 NPDITCIMSTIGGDNSNSLLPFLDYDAIIANPKIIIGYADTTALLAGIYAKTGL 160
>pdb|3OB8|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OBA|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
Length = 1032
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 145 SWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVA----YSPYSTIGAYSIDSIRQY 200
+W YNI ++ K+ V++E +N S + + + +R++ Y + T+ Y+I + +
Sbjct: 810 NWKKYNIDLM-KQNIHGVSVEKGSNGSLAVVTVNSRISPVVFYYGFETVQKYTIFANKIN 868
Query: 201 LNWVHVITAEYSRP 214
LN +T EY P
Sbjct: 869 LNTSMKLTGEYQPP 882
>pdb|3TLC|A Chain A, Microcin C7 Self Immunity Protein Mccf In Complex With
Microcin C7 Antibiotic
pdb|3TLC|B Chain B, Microcin C7 Self Immunity Protein Mccf In Complex With
Microcin C7 Antibiotic
Length = 371
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 86 NPSITTLLSIGGGKNPN----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGL 135
NP IT ++S GG N N + Y ++ +NP + D++ +A +Y GL
Sbjct: 107 NPDITCIMSTIGGDNSNSLLPFLDYDAIIANPKIIIGYADTTALLAGIYAKTGL 160
>pdb|3TLB|A Chain A, Microcin C7 Self Immunity Protein Mccf In Complex Aspartyl
Sulfamoyl Adenosine
pdb|3TLB|B Chain B, Microcin C7 Self Immunity Protein Mccf In Complex Aspartyl
Sulfamoyl Adenosine
Length = 371
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 86 NPSITTLLSIGGGKNPN----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGL 135
NP IT ++S GG N N + Y ++ +NP + D++ +A +Y GL
Sbjct: 107 NPDITCIMSTIGGDNSNSLLPFLDYDAIIANPKIIIGYSDTTALLAGIYAKTGL 160
>pdb|3TLA|A Chain A, Microcin C7 Self Immunity Protein Mccf In The Wild Type
Apo State
pdb|3TLA|B Chain B, Microcin C7 Self Immunity Protein Mccf In The Wild Type
Apo State
pdb|3TLE|A Chain A, Microcin C7 Self Immunity Protein Mccf In Complex With
Glutamyl Sulfamoyl Adenylate
pdb|3TLE|B Chain B, Microcin C7 Self Immunity Protein Mccf In Complex With
Glutamyl Sulfamoyl Adenylate
Length = 371
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 86 NPSITTLLSIGGGKNPN----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGL 135
NP IT ++S GG N N + Y ++ +NP + D++ +A +Y GL
Sbjct: 107 NPDITCIMSTIGGDNSNSLLPFLDYDAIIANPKIIIGYSDTTALLAGIYAKTGL 160
>pdb|3TLZ|A Chain A, Microcin C7 Self Immunity Protein Mccf Mutant W186f In
Complex With Adenosine Monophosphate
pdb|3TLZ|B Chain B, Microcin C7 Self Immunity Protein Mccf Mutant W186f In
Complex With Adenosine Monophosphate
Length = 371
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 86 NPSITTLLSIGGGKNPN----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGL 135
NP IT ++S GG N N + Y ++ +NP + D++ +A +Y GL
Sbjct: 107 NPDITCIMSTIGGDNSNSLLPFLDYDAIIANPKIIIGYSDTTALLAGIYAKTGL 160
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 248 VLGLPCYGYAWTLVKPEDNGIGAA-ATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNST 306
++G G A+ + P NG GAA A A+ D G K +YI ++G + P YN
Sbjct: 257 IVGYGATGDAYHITAPAPNGEGAARAXKXAIDDAGLTPDK--VDYINAHGTSTP--YNDE 312
Query: 307 Y 307
Y
Sbjct: 313 Y 313
>pdb|1PKP|A Chain A, The Structure Of Ribosomal Protein S5 Reveals Sites Of
Interaction With 16s Rrna
Length = 150
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 254 YGYAWTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPV-MYNSTY 307
+G ++KP G G A GPA + + +I + KS G N P+ M +T+
Sbjct: 89 FGAGEIILKPASEGTGVIAGGPARAVLELAGISDILS--KSIGSNTPINMVRATF 141
>pdb|1EG0|B Chain B, Fitting Of Components With Known Structure Into An 11.5 A
Cryo-Em Map Of The E.Coli 70s Ribosome
Length = 148
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 254 YGYAWTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPV-MYNSTY 307
+G ++KP G G A GPA + + +I + KS G N P+ M +T+
Sbjct: 89 FGAGEIILKPASEGTGVIAGGPARAVLELAGISDILS--KSIGSNTPINMVRATF 141
>pdb|1QD7|D Chain D, Partial Model For 30s Ribosomal Subunit
pdb|1DV4|E Chain E, Partial Structure Of 16s Rna Of The Small Ribosomal
Subunit From Thermus Thermophilus
Length = 145
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 254 YGYAWTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPV-MYNSTY 307
+G ++KP G G A GPA + + +I + KS G N P+ M +T+
Sbjct: 86 FGAGEIILKPASEGTGVIAGGPARAVLELAGISDILS--KSIGSNTPINMVRATF 138
>pdb|3TLG|A Chain A, Microcin C7 Self Immunity Protein Mccf In The Inactive
Mutant Apo State
Length = 371
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 86 NPSITTLLSIGGGKNPN----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGL 135
NP IT + S GG N N + Y ++ +NP + D++ +A +Y GL
Sbjct: 107 NPDITCIXSTIGGDNSNSLLPFLDYDAIIANPKIIIGYSDTTALLAGIYAKTGL 160
>pdb|3TLG|B Chain B, Microcin C7 Self Immunity Protein Mccf In The Inactive
Mutant Apo State
Length = 371
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 86 NPSITTLLSIGGGKNPN----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGL 135
NP IT + S GG N N + Y ++ +NP + D++ +A +Y GL
Sbjct: 107 NPDITCIXSTIGGDNSNSLLPFLDYDAIIANPKIIIGYSDTTALLAGIYAKTGL 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,299,335
Number of Sequences: 62578
Number of extensions: 480487
Number of successful extensions: 1189
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 961
Number of HSP's gapped (non-prelim): 113
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)