Query 036029
Match_columns 359
No_of_seqs 134 out of 1410
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 08:43:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036029.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036029hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02879 GH18_plant_chitinase_c 100.0 6.7E-66 1.5E-70 475.1 30.6 286 26-355 3-298 (299)
2 cd02872 GH18_chitolectin_chito 100.0 2.9E-65 6.3E-70 485.3 32.5 319 28-358 1-357 (362)
3 cd02873 GH18_IDGF The IDGF's ( 100.0 2.3E-63 4.9E-68 476.3 32.4 322 27-358 1-408 (413)
4 smart00636 Glyco_18 Glycosyl h 100.0 6.9E-62 1.5E-66 457.7 30.6 311 27-350 1-334 (334)
5 KOG2806 Chitinase [Carbohydrat 100.0 4.4E-61 9.6E-66 461.6 32.9 329 24-358 56-406 (432)
6 cd02878 GH18_zymocin_alpha Zym 100.0 1.7E-61 3.6E-66 454.5 28.9 302 27-350 1-345 (345)
7 COG3325 ChiA Chitinase [Carboh 100.0 1E-61 2.2E-66 443.4 25.3 327 23-358 35-431 (441)
8 cd06548 GH18_chitinase The GH1 100.0 6E-60 1.3E-64 441.0 28.2 278 28-350 1-322 (322)
9 PF00704 Glyco_hydro_18: Glyco 100.0 6.8E-56 1.5E-60 418.7 28.6 315 26-350 1-343 (343)
10 cd02876 GH18_SI-CLP Stabilin-1 100.0 4.5E-55 9.7E-60 407.7 25.4 291 27-352 4-312 (318)
11 cd02875 GH18_chitobiase Chitob 100.0 1.9E-52 4.2E-57 393.7 31.5 292 25-354 35-343 (358)
12 cd02874 GH18_CFLE_spore_hydrol 100.0 2.5E-51 5.4E-56 382.2 26.1 294 27-355 3-312 (313)
13 cd06545 GH18_3CO4_chitinase Th 100.0 8.4E-48 1.8E-52 347.5 26.0 247 28-358 1-252 (253)
14 cd06549 GH18_trifunctional GH1 100.0 1.9E-46 4.1E-51 345.8 24.7 288 28-353 2-296 (298)
15 cd00598 GH18_chitinase-like Th 100.0 5.9E-37 1.3E-41 269.7 21.4 204 28-350 1-210 (210)
16 cd06546 GH18_CTS3_chitinase GH 100.0 2.8E-33 6E-38 251.7 24.5 198 27-253 1-217 (256)
17 COG3858 Predicted glycosyl hyd 100.0 5.9E-34 1.3E-38 260.5 17.8 244 88-357 160-419 (423)
18 cd06544 GH18_narbonin Narbonin 100.0 8.1E-33 1.7E-37 247.2 21.3 203 36-258 11-221 (253)
19 cd02871 GH18_chitinase_D-like 100.0 7.4E-31 1.6E-35 243.5 24.6 209 26-254 1-248 (312)
20 KOG2091 Predicted member of gl 99.9 7.8E-26 1.7E-30 198.2 16.7 290 26-351 79-385 (392)
21 cd06542 GH18_EndoS-like Endo-b 99.9 7.3E-25 1.6E-29 198.4 17.7 195 26-255 1-207 (255)
22 cd02877 GH18_hevamine_XipI_cla 99.9 3.6E-23 7.8E-28 187.6 20.4 201 27-254 2-229 (280)
23 cd06543 GH18_PF-ChiA-like PF-C 99.9 6.3E-21 1.4E-25 174.2 16.4 150 45-214 23-184 (294)
24 COG3469 Chitinase [Carbohydrat 99.8 1.1E-18 2.4E-23 149.2 15.6 215 22-253 22-266 (332)
25 KOG4701 Chitinase [Cell wall/m 99.5 9.6E-13 2.1E-17 119.0 19.1 205 20-254 21-257 (568)
26 cd06547 GH85_ENGase Endo-beta- 98.5 3.3E-07 7.1E-12 85.7 8.4 157 78-259 51-216 (339)
27 PF03644 Glyco_hydro_85: Glyco 98.0 2.4E-05 5.1E-10 72.5 9.1 155 78-257 47-209 (311)
28 PF02638 DUF187: Glycosyl hydr 98.0 0.0001 2.2E-09 68.5 12.0 128 112-255 135-298 (311)
29 PF13200 DUF4015: Putative gly 97.7 0.021 4.6E-07 52.8 22.8 86 117-210 123-227 (316)
30 PF11340 DUF3142: Protein of u 97.6 0.00064 1.4E-08 57.0 10.0 115 113-255 23-138 (181)
31 COG3867 Arabinogalactan endo-1 95.0 2.7 5.9E-05 38.3 16.6 90 71-165 102-212 (403)
32 KOG2331 Predicted glycosylhydr 94.4 0.38 8.2E-06 45.6 9.8 152 80-257 118-274 (526)
33 cd02930 DCR_FMN 2,4-dienoyl-Co 89.4 4.9 0.00011 38.1 11.3 88 48-139 47-158 (353)
34 cd04734 OYE_like_3_FMN Old yel 88.1 7.3 0.00016 36.8 11.4 89 48-140 47-163 (343)
35 TIGR02104 pulA_typeI pullulana 87.7 5.8 0.00013 40.6 11.2 85 73-166 229-340 (605)
36 cd02810 DHOD_DHPD_FMN Dihydroo 87.3 5.8 0.00013 36.3 10.1 73 73-162 83-161 (289)
37 TIGR02402 trehalose_TreZ malto 87.2 4.7 0.0001 40.6 10.0 92 71-167 158-270 (542)
38 TIGR02103 pullul_strch alpha-1 87.0 6 0.00013 42.2 10.9 85 73-166 404-517 (898)
39 PRK12313 glycogen branching en 86.6 6.8 0.00015 40.3 11.0 94 71-167 218-354 (633)
40 cd04735 OYE_like_4_FMN Old yel 85.6 14 0.00029 35.1 11.8 151 50-210 50-258 (353)
41 PF14871 GHL6: Hypothetical gl 85.4 4.4 9.5E-05 32.6 7.1 65 72-139 43-132 (132)
42 PRK12568 glycogen branching en 85.2 9.9 0.00021 39.6 11.2 95 71-167 317-454 (730)
43 TIGR01370 cysRS possible cyste 85.1 5.2 0.00011 37.2 8.4 55 112-167 142-205 (315)
44 TIGR01515 branching_enzym alph 84.8 11 0.00024 38.7 11.4 95 71-167 204-341 (613)
45 cd02932 OYE_YqiM_FMN Old yello 84.7 14 0.00031 34.6 11.5 47 47-95 46-97 (336)
46 cd04733 OYE_like_2_FMN Old yel 83.8 15 0.00032 34.6 11.2 70 68-141 77-172 (338)
47 PLN02960 alpha-amylase 82.8 15 0.00032 39.0 11.3 94 71-167 464-603 (897)
48 PRK10785 maltodextrin glucosid 81.0 12 0.00025 38.4 9.8 118 48-167 193-365 (598)
49 PRK14706 glycogen branching en 80.0 25 0.00055 36.2 11.9 95 71-167 215-350 (639)
50 PRK05402 glycogen branching en 79.9 22 0.00048 37.3 11.7 95 71-167 313-450 (726)
51 COG1649 Uncharacterized protei 79.7 4.5 9.8E-05 39.0 6.0 125 113-255 181-343 (418)
52 PLN02447 1,4-alpha-glucan-bran 78.7 22 0.00047 37.3 10.9 94 71-167 298-438 (758)
53 PF07745 Glyco_hydro_53: Glyco 78.2 26 0.00055 33.0 10.4 89 73-166 58-167 (332)
54 PLN03244 alpha-amylase; Provis 76.8 32 0.00069 36.1 11.2 66 71-138 439-531 (872)
55 PF14883 GHL13: Hypothetical g 75.8 64 0.0014 29.5 14.8 124 117-254 121-263 (294)
56 PF14587 Glyco_hydr_30_2: O-Gl 74.4 37 0.0008 32.5 10.3 90 72-167 103-218 (384)
57 PF07172 GRP: Glycine rich pro 73.7 1.8 3.9E-05 32.6 1.2 12 1-12 1-12 (95)
58 PF13199 Glyco_hydro_66: Glyco 73.6 5.6 0.00012 40.1 5.0 53 112-164 239-301 (559)
59 TIGR02100 glgX_debranch glycog 73.4 25 0.00054 36.6 9.8 87 72-160 244-365 (688)
60 PF00724 Oxidored_FMN: NADH:fl 73.2 44 0.00095 31.5 10.8 127 47-185 49-227 (341)
61 TIGR02102 pullulan_Gpos pullul 73.0 33 0.00072 37.7 10.9 84 73-165 555-662 (1111)
62 PLN02877 alpha-amylase/limit d 72.7 23 0.0005 38.1 9.4 69 74-144 467-565 (970)
63 PF02057 Glyco_hydro_59: Glyco 72.1 11 0.00023 38.6 6.6 85 77-167 116-202 (669)
64 COG1306 Uncharacterized conser 71.0 9.7 0.00021 34.8 5.4 85 117-212 195-299 (400)
65 cd02803 OYE_like_FMN_family Ol 69.8 10 0.00022 35.4 5.7 89 48-140 47-163 (327)
66 TIGR00737 nifR3_yhdG putative 68.7 34 0.00074 31.8 8.9 42 85-143 59-100 (319)
67 PF07364 DUF1485: Protein of u 68.4 29 0.00064 31.9 8.2 148 74-255 46-198 (292)
68 cd02931 ER_like_FMN Enoate red 68.3 12 0.00027 35.8 6.0 64 72-139 82-171 (382)
69 PRK14705 glycogen branching en 68.0 52 0.0011 36.6 11.1 94 71-166 813-949 (1224)
70 cd04747 OYE_like_5_FMN Old yel 67.9 19 0.00041 34.3 7.1 90 48-141 47-167 (361)
71 cd02933 OYE_like_FMN Old yello 67.7 65 0.0014 30.4 10.6 44 51-96 50-98 (338)
72 PF14885 GHL15: Hypothetical g 67.5 11 0.00023 27.3 4.1 35 105-139 40-75 (79)
73 cd04740 DHOD_1B_like Dihydroor 67.0 42 0.0009 30.8 9.1 59 87-162 88-153 (296)
74 PLN02495 oxidoreductase, actin 66.1 53 0.0012 31.6 9.7 56 73-144 98-153 (385)
75 cd02801 DUS_like_FMN Dihydrour 65.4 36 0.00079 29.7 8.1 63 84-163 50-123 (231)
76 PRK07259 dihydroorotate dehydr 65.0 44 0.00095 30.8 8.8 58 88-162 91-156 (301)
77 PF07476 MAAL_C: Methylasparta 64.8 50 0.0011 29.0 8.2 101 112-241 87-189 (248)
78 COG1902 NemA NADH:flavin oxido 64.3 77 0.0017 30.2 10.3 129 71-211 81-262 (363)
79 PRK13523 NADPH dehydrogenase N 64.2 1.3E+02 0.0028 28.3 13.4 90 47-140 50-164 (337)
80 PRK03705 glycogen debranching 63.6 32 0.0007 35.6 8.2 67 73-141 242-339 (658)
81 PRK03995 hypothetical protein; 63.4 18 0.0004 32.8 5.7 68 87-158 179-260 (267)
82 cd02940 DHPD_FMN Dihydropyrimi 63.3 77 0.0017 29.2 10.1 66 81-162 92-167 (299)
83 PRK10550 tRNA-dihydrouridine s 63.1 31 0.00067 32.1 7.4 59 88-163 62-131 (312)
84 PF10566 Glyco_hydro_97: Glyco 62.9 35 0.00076 31.1 7.4 79 71-165 71-149 (273)
85 cd02929 TMADH_HD_FMN Trimethyl 62.8 26 0.00056 33.5 7.0 91 48-141 52-173 (370)
86 cd06592 GH31_glucosidase_KIAA1 61.6 32 0.00069 31.8 7.2 33 110-142 134-166 (303)
87 PRK08318 dihydropyrimidine deh 60.5 72 0.0016 31.0 9.8 66 81-162 92-167 (420)
88 COG1891 Uncharacterized protei 60.0 82 0.0018 26.6 8.3 156 130-340 19-182 (235)
89 PF04468 PSP1: PSP1 C-terminal 60.0 22 0.00048 26.3 4.7 60 106-165 14-82 (88)
90 cd06591 GH31_xylosidase_XylS X 57.8 50 0.0011 30.8 7.8 76 64-142 57-160 (319)
91 COG4724 Endo-beta-N-acetylgluc 57.7 21 0.00046 33.9 5.1 81 77-160 131-217 (553)
92 KOG1552 Predicted alpha/beta h 57.6 16 0.00036 32.7 4.2 44 203-249 88-134 (258)
93 PRK07565 dihydroorotate dehydr 57.4 70 0.0015 30.0 8.8 75 70-162 84-164 (334)
94 PRK02506 dihydroorotate dehydr 57.3 81 0.0017 29.3 9.1 73 73-162 77-156 (310)
95 COG1908 FrhD Coenzyme F420-red 56.2 36 0.00078 26.7 5.3 74 88-167 53-126 (132)
96 PRK14581 hmsF outer membrane N 55.9 2.6E+02 0.0056 29.1 13.0 125 117-253 443-610 (672)
97 PRK11815 tRNA-dihydrouridine s 54.5 35 0.00077 32.0 6.3 40 87-143 63-102 (333)
98 TIGR00742 yjbN tRNA dihydrouri 53.5 44 0.00096 31.2 6.7 59 87-162 53-122 (318)
99 COG0296 GlgB 1,4-alpha-glucan 52.8 54 0.0012 33.6 7.5 94 71-166 212-348 (628)
100 PRK01060 endonuclease IV; Prov 52.8 27 0.00058 31.6 5.1 47 120-166 14-60 (281)
101 PRK14866 hypothetical protein; 52.3 36 0.00078 33.3 6.0 68 87-158 183-263 (451)
102 PRK14582 pgaB outer membrane N 50.9 78 0.0017 32.8 8.4 129 113-253 440-610 (671)
103 COG2342 Predicted extracellula 49.6 2.1E+02 0.0045 26.2 10.2 51 117-167 125-185 (300)
104 cd06589 GH31 The enzymes of gl 48.5 65 0.0014 29.1 6.9 59 67-143 60-118 (265)
105 PF12138 Spherulin4: Spherulat 48.0 2.1E+02 0.0045 25.7 11.1 74 72-164 52-134 (253)
106 cd00019 AP2Ec AP endonuclease 47.2 41 0.00088 30.4 5.4 46 120-165 12-57 (279)
107 PF08869 XisI: XisI protein; 46.6 12 0.00026 29.0 1.4 17 235-251 81-97 (111)
108 PF07999 RHSP: Retrotransposon 46.4 1.4E+02 0.003 29.3 9.1 101 228-351 106-215 (439)
109 PF02055 Glyco_hydro_30: O-Gly 46.0 1.8E+02 0.0038 29.1 9.9 130 76-210 156-312 (496)
110 PF01207 Dus: Dihydrouridine s 45.6 53 0.0011 30.5 5.9 65 82-163 47-122 (309)
111 cd04741 DHOD_1A_like Dihydroor 45.6 1.6E+02 0.0034 27.1 9.0 59 87-162 90-156 (294)
112 PLN02411 12-oxophytodienoate r 44.6 52 0.0011 31.7 5.8 43 51-95 60-107 (391)
113 PLN02923 xylose isomerase 42.7 3.3E+02 0.0072 26.6 11.4 40 146-193 246-286 (478)
114 PRK05286 dihydroorotate dehydr 42.4 2.2E+02 0.0049 26.8 9.7 66 87-163 136-206 (344)
115 PF02065 Melibiase: Melibiase; 41.9 1.6E+02 0.0035 28.4 8.6 120 71-204 102-251 (394)
116 PF04914 DltD_C: DltD C-termin 41.4 89 0.0019 25.0 5.8 59 73-137 36-95 (130)
117 cd06599 GH31_glycosidase_Aec37 41.1 82 0.0018 29.3 6.5 70 71-142 71-169 (317)
118 COG0429 Predicted hydrolase of 40.9 1E+02 0.0022 28.9 6.7 49 117-165 90-148 (345)
119 PF14488 DUF4434: Domain of un 39.1 2.3E+02 0.0049 23.6 11.4 109 46-165 32-151 (166)
120 cd06602 GH31_MGAM_SI_GAA This 38.8 1.4E+02 0.003 28.1 7.6 34 110-143 134-167 (339)
121 PRK08255 salicylyl-CoA 5-hydro 38.2 61 0.0013 34.3 5.6 46 48-95 445-496 (765)
122 PRK09936 hypothetical protein; 37.8 3.3E+02 0.0071 25.1 11.4 107 46-163 50-170 (296)
123 PF12876 Cellulase-like: Sugar 37.6 67 0.0014 23.4 4.3 73 126-209 1-88 (88)
124 TIGR01037 pyrD_sub1_fam dihydr 37.3 2.4E+02 0.0052 25.8 8.9 58 88-162 90-156 (300)
125 PRK14510 putative bifunctional 37.1 1.8E+02 0.0038 32.7 9.1 87 72-165 246-365 (1221)
126 PRK13575 3-dehydroquinate dehy 36.4 3.1E+02 0.0067 24.4 12.8 60 74-141 48-107 (238)
127 cd06598 GH31_transferase_CtsZ 35.6 1.1E+02 0.0023 28.6 6.3 31 111-142 135-165 (317)
128 PRK02412 aroD 3-dehydroquinate 35.5 3.3E+02 0.0071 24.4 12.2 57 76-141 62-119 (253)
129 cd06595 GH31_xylosidase_XylS-l 34.8 1.8E+02 0.0039 26.7 7.6 75 66-142 67-160 (292)
130 PF08885 GSCFA: GSCFA family; 34.2 1.1E+02 0.0023 27.6 5.7 25 73-97 152-176 (251)
131 PF07582 AP_endonuc_2_N: AP en 34.1 72 0.0016 21.3 3.5 41 121-162 3-44 (55)
132 KOG3035 Isoamyl acetate-hydrol 33.8 2.3E+02 0.005 25.0 7.3 65 71-137 98-171 (245)
133 TIGR00542 hxl6Piso_put hexulos 33.7 77 0.0017 28.6 5.0 47 121-167 19-66 (279)
134 cd04739 DHOD_like Dihydroorota 33.7 2.9E+02 0.0063 25.8 8.9 58 88-162 99-162 (325)
135 COG0042 tRNA-dihydrouridine sy 33.3 1.4E+02 0.003 27.9 6.6 46 118-163 79-135 (323)
136 COG1453 Predicted oxidoreducta 32.6 3.9E+02 0.0085 25.6 9.2 28 117-144 33-60 (391)
137 PLN03231 putative alpha-galact 32.4 4.5E+02 0.0097 25.0 10.2 57 115-181 160-216 (357)
138 TIGR01036 pyrD_sub2 dihydrooro 32.3 4.2E+02 0.0092 24.8 9.7 78 75-163 121-203 (335)
139 PLN02161 beta-amylase 32.0 94 0.002 30.9 5.3 44 117-161 117-166 (531)
140 PLN00197 beta-amylase; Provisi 31.8 89 0.0019 31.3 5.1 44 117-161 127-176 (573)
141 PF01261 AP_endonuc_2: Xylose 31.8 63 0.0014 27.2 3.9 41 124-167 1-41 (213)
142 PF05691 Raffinose_syn: Raffin 31.7 2.1E+02 0.0046 30.1 8.0 71 72-142 287-392 (747)
143 cd06593 GH31_xylosidase_YicI Y 31.6 1.6E+02 0.0035 27.1 6.8 30 111-141 130-159 (308)
144 COG3410 Uncharacterized conser 31.6 98 0.0021 25.8 4.5 44 112-158 146-189 (191)
145 TIGR01631 Trypano_RHS trypanos 31.5 5.4E+02 0.012 27.1 10.7 101 228-351 261-370 (760)
146 PF07745 Glyco_hydro_53: Glyco 31.4 4.5E+02 0.0097 24.7 10.7 68 80-164 161-230 (332)
147 PLN02711 Probable galactinol-- 31.3 2.5E+02 0.0055 29.5 8.4 69 73-141 305-408 (777)
148 PLN02803 beta-amylase 30.8 1E+02 0.0022 30.8 5.4 44 117-161 107-156 (548)
149 PF00834 Ribul_P_3_epim: Ribul 30.4 2.3E+02 0.005 24.5 7.0 76 106-210 62-137 (201)
150 cd01841 NnaC_like NnaC (CMP-Ne 30.2 2.3E+02 0.005 23.0 7.0 64 71-138 73-137 (174)
151 TIGR01093 aroD 3-dehydroquinat 30.0 3.8E+02 0.0082 23.4 13.3 48 87-142 56-103 (228)
152 TIGR03234 OH-pyruv-isom hydrox 29.7 78 0.0017 28.1 4.2 37 120-166 16-52 (254)
153 PRK09441 cytoplasmic alpha-amy 29.7 1.2E+02 0.0026 30.0 5.9 46 112-164 207-252 (479)
154 PRK10605 N-ethylmaleimide redu 29.1 2.1E+02 0.0045 27.2 7.2 47 48-96 49-100 (362)
155 cd04738 DHOD_2_like Dihydrooro 29.1 2.7E+02 0.0058 26.0 7.8 66 87-163 127-197 (327)
156 cd01828 sialate_O-acetylestera 29.1 3.1E+02 0.0067 22.2 7.5 60 72-137 71-130 (169)
157 CHL00200 trpA tryptophan synth 29.0 4.4E+02 0.0095 23.8 9.1 97 124-251 112-209 (263)
158 smart00633 Glyco_10 Glycosyl h 28.9 4.1E+02 0.009 23.6 9.4 72 77-159 107-179 (254)
159 smart00812 Alpha_L_fucos Alpha 28.9 2.7E+02 0.0058 26.8 7.9 71 71-144 126-206 (384)
160 PRK07535 methyltetrahydrofolat 28.8 1.6E+02 0.0036 26.5 6.1 43 119-162 26-68 (261)
161 PF00128 Alpha-amylase: Alpha 28.7 98 0.0021 27.9 4.8 46 112-165 143-188 (316)
162 PF01120 Alpha_L_fucos: Alpha- 28.3 4.3E+02 0.0094 24.9 9.1 87 71-161 136-235 (346)
163 PRK13210 putative L-xylulose 5 27.9 1.1E+02 0.0024 27.5 5.0 47 121-167 19-66 (284)
164 PF14606 Lipase_GDSL_3: GDSL-l 27.7 3.4E+02 0.0073 23.0 7.3 65 71-137 76-141 (178)
165 PLN02801 beta-amylase 27.6 1.2E+02 0.0027 30.0 5.2 42 120-161 39-86 (517)
166 cd04724 Tryptophan_synthase_al 27.4 4.4E+02 0.0095 23.3 9.5 67 122-210 95-162 (242)
167 PRK09505 malS alpha-amylase; R 26.5 1.4E+02 0.003 31.2 5.8 29 112-140 435-463 (683)
168 PLN02705 beta-amylase 26.5 1.3E+02 0.0028 30.7 5.2 44 117-161 268-317 (681)
169 PF10731 Anophelin: Thrombin i 26.4 57 0.0012 22.0 1.9 17 1-17 1-17 (65)
170 PRK10415 tRNA-dihydrouridine s 26.4 2.5E+02 0.0054 26.2 7.1 44 118-162 78-132 (321)
171 cd06594 GH31_glucosidase_YihQ 26.3 2.4E+02 0.0052 26.2 6.9 67 73-141 71-166 (317)
172 PF01487 DHquinase_I: Type I 3 26.0 1.6E+02 0.0035 25.6 5.5 58 73-140 40-97 (224)
173 PRK13209 L-xylulose 5-phosphat 25.6 1.4E+02 0.0031 26.8 5.3 47 120-166 23-70 (283)
174 PRK12677 xylose isomerase; Pro 25.1 1.9E+02 0.0041 27.8 6.2 47 120-166 33-80 (384)
175 COG2247 LytB Putative cell wal 24.8 2.7E+02 0.0058 26.0 6.6 123 1-139 1-137 (337)
176 PF05763 DUF835: Protein of un 24.8 1.4E+02 0.0031 24.0 4.5 55 112-166 56-111 (136)
177 PF04414 tRNA_deacylase: D-ami 24.5 93 0.002 27.2 3.5 66 90-158 131-207 (213)
178 cd06415 GH25_Cpl1-like Cpl-1 l 24.5 3.6E+02 0.0078 22.9 7.3 46 120-166 73-121 (196)
179 cd00423 Pterin_binding Pterin 23.8 3.2E+02 0.0069 24.5 7.1 23 228-250 150-172 (258)
180 PLN02905 beta-amylase 23.7 1.5E+02 0.0033 30.3 5.2 44 117-161 286-335 (702)
181 smart00518 AP2Ec AP endonuclea 23.2 1.6E+02 0.0035 26.3 5.1 45 122-166 14-58 (273)
182 PRK10558 alpha-dehydro-beta-de 23.2 1.3E+02 0.0028 27.1 4.4 35 122-158 31-65 (256)
183 PLN02899 alpha-galactosidase 23.2 4.3E+02 0.0093 27.2 8.2 55 116-181 193-247 (633)
184 PRK10128 2-keto-3-deoxy-L-rham 23.1 1.4E+02 0.0029 27.2 4.5 35 123-159 31-65 (267)
185 KOG3111 D-ribulose-5-phosphate 23.0 4.9E+02 0.011 22.5 7.3 65 124-210 80-144 (224)
186 PRK09989 hypothetical protein; 22.7 1.6E+02 0.0035 26.2 4.9 36 121-166 18-53 (258)
187 cd01827 sialate_O-acetylestera 22.2 4.4E+02 0.0096 21.6 7.5 63 72-137 92-154 (188)
188 TIGR02456 treS_nterm trehalose 22.1 2.1E+02 0.0046 28.8 6.1 53 112-165 172-230 (539)
189 TIGR02631 xylA_Arthro xylose i 21.7 2.3E+02 0.0051 27.2 6.0 60 103-167 21-82 (382)
190 PRK13347 coproporphyrinogen II 21.4 5.5E+02 0.012 25.2 8.7 39 120-158 190-228 (453)
191 PF02662 FlpD: Methyl-viologen 21.4 2.5E+02 0.0055 22.1 5.2 71 88-164 52-122 (124)
192 cd07321 Extradiol_Dioxygenase_ 21.3 80 0.0017 22.6 2.1 28 106-133 9-36 (77)
193 COG5309 Exo-beta-1,3-glucanase 21.3 4.4E+02 0.0096 24.1 7.1 57 80-137 222-279 (305)
194 PRK00865 glutamate racemase; P 21.1 3.4E+02 0.0074 24.4 6.7 66 68-140 11-76 (261)
195 PRK08005 epimerase; Validated 21.1 4.1E+02 0.009 23.1 6.9 76 106-210 63-138 (210)
196 TIGR02810 agaZ_gatZ D-tagatose 21.1 7.8E+02 0.017 24.0 11.0 235 71-335 59-368 (420)
197 TIGR00262 trpA tryptophan synt 20.7 6.2E+02 0.013 22.7 9.8 98 123-251 107-205 (256)
198 TIGR03239 GarL 2-dehydro-3-deo 20.6 1.7E+02 0.0036 26.3 4.5 33 123-157 25-57 (249)
199 PF03328 HpcH_HpaI: HpcH/HpaI 20.6 3.6E+02 0.0078 23.3 6.6 78 123-206 13-90 (221)
200 PF02896 PEP-utilizers_C: PEP- 20.6 2.7E+02 0.0058 25.7 5.9 88 116-211 119-208 (293)
201 cd02911 arch_FMN Archeal FMN-b 20.5 5.9E+02 0.013 22.4 8.1 55 88-160 72-137 (233)
202 cd06522 GH25_AtlA-like AtlA is 20.5 3.2E+02 0.0069 23.2 6.1 41 121-164 77-120 (192)
203 PF09839 DUF2066: Uncharacteri 20.1 3.8E+02 0.0083 23.6 6.7 77 52-136 103-180 (234)
204 PF05219 DREV: DREV methyltran 20.0 94 0.002 28.1 2.7 93 88-188 94-197 (265)
205 cd01838 Isoamyl_acetate_hydrol 20.0 3.8E+02 0.0082 22.0 6.6 64 72-137 91-162 (199)
No 1
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=6.7e-66 Score=475.09 Aligned_cols=286 Identities=50% Similarity=0.908 Sum_probs=257.4
Q ss_pred cEEEEEecCCC-CcCCCCCCCCCCcEEEEEeEEEeCCCcEEecCccchHHHHHHHHHHHhcCCCceEEEEEcCCCCCCCc
Q 036029 26 LIRAGYWDSGD-EFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYS 104 (359)
Q Consensus 26 ~~~~~y~~~~~-~~~~~~i~~~~~Thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~ 104 (359)
-+++|||++|. .+.+++||.++||||+|+|+.++++++.+...+.+...+..+.+.+|+++|++|+++|||||+. +++
T Consensus 3 ~~~~~Y~~~w~~~~~~~~i~~~~~THi~yaf~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~lkvlisiGG~~~-~s~ 81 (299)
T cd02879 3 IVKGGYWPAWSEEFPPSNIDSSLFTHLFYAFADLDPSTYEVVISPSDESEFSTFTETVKRKNPSVKTLLSIGGGGS-DSS 81 (299)
T ss_pred eEEEEEECCCCCCCChhHCCcccCCEEEEEEEEecCCCCEEeeccccHHHHHHHHHHHHHhCCCCeEEEEEeCCCC-CCc
Confidence 36899999976 8999999999999999999999998888877766667788888889999999999999999986 567
Q ss_pred ccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeecC
Q 036029 105 TYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYS 184 (359)
Q Consensus 105 ~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~ 184 (359)
.|+.++++++.|++|++++++++++|||||||||||+|..++|+++|+.||++||++|+...+ ++++.+++||+++|+.
T Consensus 82 ~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~~~~-~~~~~~~~ls~av~~~ 160 (299)
T cd02879 82 AFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKDEAR-SSGRPPLLLTAAVYFS 160 (299)
T ss_pred hhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHHHhh-ccCCCcEEEEeecccc
Confidence 999999999999999999999999999999999999998778999999999999999987543 3444468999999876
Q ss_pred CCc----cccccCHhHHhccccEEEeecccccCCCCCCCCCCCCccc-----ccHHHHHHHHHHCCCCCCceeeecccce
Q 036029 185 PYS----TIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALV-----FNTEYGITAWTDEGLSADKLVLGLPCYG 255 (359)
Q Consensus 185 ~~~----~~~~~~~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl~-----~~~~~~~~~~~~~g~~~~Kl~lGlp~yG 255 (359)
+.. ....|++++|.++||+|+||+||++++|.+..+++++||+ .+++.+++.|++.|+|++||+||+||||
T Consensus 161 ~~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~~~~~~~~~v~~~~~~g~p~~KlvlGvp~YG 240 (299)
T cd02879 161 PILFLSDDSVSYPIEAINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPNSNVSTDYGIKSWIKAGVPAKKLVLGLPLYG 240 (299)
T ss_pred hhhccccccccCCHHHHHhhCCEEEEEeecccCCCCCCCCCCCCcCCCCCCCCCHHHHHHHHHHcCCCHHHEEEEecccc
Confidence 654 3446899999999999999999999999776788999987 4789999999999999999999999999
Q ss_pred eeeeecCCCCCCCCcccCCCCCCCCccccHHHHHHhhhhCCCCccEEEeCCeeeeEEEeCCEEEEEcCHHHHHHHHHHHH
Q 036029 256 YAWTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGKIWFGFDDVEAVRMKVAYAK 335 (359)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~ydd~~S~~~K~~~~~ 335 (359)
|.|++ ||+.+.++|.+.+++||+|||++|++.|++|++
T Consensus 241 r~~~~------------------------------------------~D~~~~~~y~~~~~~wi~ydd~~Si~~K~~~a~ 278 (299)
T cd02879 241 RAWTL------------------------------------------YDTTTVSSYVYAGTTWIGYDDVQSIAVKVKYAK 278 (299)
T ss_pred ccccc------------------------------------------cCCCcceEEEEECCEEEEeCCHHHHHHHHHHHH
Confidence 99952 677778999999999999999999999999999
Q ss_pred HCCCcEEEEEEccCCCchhh
Q 036029 336 EKKLRGYFVWKVAYDHDWML 355 (359)
Q Consensus 336 ~~gl~Gv~iW~l~~Dd~~~l 355 (359)
++||||+|+|++++||...|
T Consensus 279 ~~~lgGv~~W~l~~Dd~~~~ 298 (299)
T cd02879 279 QKGLLGYFAWAVGYDDNNWL 298 (299)
T ss_pred hCCCCeEEEEEeecCCcccc
Confidence 99999999999999997665
No 2
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=2.9e-65 Score=485.30 Aligned_cols=319 Identities=35% Similarity=0.650 Sum_probs=279.5
Q ss_pred EEEEecCCC-------CcCCCCCCCCCCcEEEEEeEEEeCCCcEEecCcc---chHHHHHHHHHHHhcCCCceEEEEEcC
Q 036029 28 RAGYWDSGD-------EFFISDVNSALFTHLMCGFADVNSTSYELSLSPS---DEKQFSNFTDTVKKKNPSITTLLSIGG 97 (359)
Q Consensus 28 ~~~y~~~~~-------~~~~~~i~~~~~Thii~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~lk~~~~~~kvllsigg 97 (359)
++|||+.|. .|.++++|.++||||+|+|+.+++++......+. ....+..+. .+|+++|++||++||||
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g~~~~~~~~~d~~~~~~~~~~-~lk~~~p~lkvlisiGG 79 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDGNIIILDEWNDIDLGLYERFN-ALKEKNPNLKTLLAIGG 79 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCCCEEecCchhhhhhhHHHHHH-HHHhhCCCceEEEEEcC
Confidence 589999843 5778999999999999999999998644433322 345566665 68999999999999999
Q ss_pred CCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCC----CcchhhHHHHHHHHHHHHHHHhhcCCCCc
Q 036029 98 GKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANT----SWDNYNIGILFKEWRAAVALEARNNSSQS 173 (359)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~----~~~~~~~~~ll~~l~~~l~~~~~~~~~~~ 173 (359)
|.. +++.|+.++.+++.|++|+++++++|++|+|||||||||+|.. ++++++|+.||++||++|+..++
T Consensus 80 ~~~-~~~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~~~~~------ 152 (362)
T cd02872 80 WNF-GSAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFEPEAP------ 152 (362)
T ss_pred CCC-CcchhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHHhhCc------
Confidence 986 4568999999999999999999999999999999999999974 47899999999999999998722
Q ss_pred eEEEEEEeecCCCccccccCHhHHhccccEEEeecccccCCCCCCCCCCCCccc-----------ccHHHHHHHHHHCCC
Q 036029 174 QLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALV-----------FNTEYGITAWTDEGL 242 (359)
Q Consensus 174 ~~~ls~~~~~~~~~~~~~~~~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl~-----------~~~~~~~~~~~~~g~ 242 (359)
+++||+++|+.+......||++.|.+++|+|+||+||++++| +..+++++||+ .+++.+++.|++.|+
T Consensus 153 ~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~-~~~~g~~spl~~~~~~~~~~~~~~v~~~v~~~~~~gv 231 (362)
T cd02872 153 RLLLTAAVSAGKETIDAAYDIPEISKYLDFINVMTYDFHGSW-EGVTGHNSPLYAGSADTGDQKYLNVDYAIKYWLSKGA 231 (362)
T ss_pred CeEEEEEecCChHHHhhcCCHHHHhhhcceEEEecccCCCCC-CCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCC
Confidence 379999999876554556899999999999999999999997 45789999987 259999999999999
Q ss_pred CCCceeeecccceeeeeecCCCCCCCCcccCCCCC-----CCCccccHHHHHHhhhhCCCCccEEEeCCeeeeEEEeCCE
Q 036029 243 SADKLVLGLPCYGYAWTLVKPEDNGIGAAATGPAL-----SDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGKI 317 (359)
Q Consensus 243 ~~~Kl~lGlp~yG~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~~~ 317 (359)
|++||+||||+||+.|++.++.++++|+|+.+++. ...|.++|.|||+++ ..+ ++..||+.+.+||++.+++
T Consensus 232 p~~KlvlGlp~YG~~~~~~~~~~~~~g~~~~g~~~~g~~~~~~g~~~y~ei~~~~-~~~--~~~~~D~~~~~~y~~~~~~ 308 (362)
T cd02872 232 PPEKLVLGIPTYGRSFTLASPSNTGVGAPASGPGTAGPYTREAGFLAYYEICEFL-KSG--WTVVWDDEQKVPYAYKGNQ 308 (362)
T ss_pred CHHHeEeccccccceeeecCCccCCCCCccCCCCCCCCCcCCCccchHHHHHHhh-cCC--cEEEEeCCcceeEEEECCE
Confidence 99999999999999999998888888988876542 567899999999988 677 9999999999999999999
Q ss_pred EEEEcCHHHHHHHHHHHHHCCCcEEEEEEccCCC--------chhhhhc
Q 036029 318 WFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYDH--------DWMLSQA 358 (359)
Q Consensus 318 ~i~ydd~~S~~~K~~~~~~~gl~Gv~iW~l~~Dd--------~~~l~~a 358 (359)
||+|||++|++.|+++++++||||+++|++++|| .++|++|
T Consensus 309 ~v~ydd~~Si~~K~~~~~~~~lgGv~iW~l~~DD~~g~cg~~~~pLl~~ 357 (362)
T cd02872 309 WVGYDDEESIALKVQYLKSKGLGGAMVWSIDLDDFRGTCGQGKYPLLNA 357 (362)
T ss_pred EEEeCCHHHHHHHHHHHHhCCCceEEEEeeecCcCCCccCCCCCcHHHH
Confidence 9999999999999999999999999999999999 3667775
No 3
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=2.3e-63 Score=476.30 Aligned_cols=322 Identities=26% Similarity=0.508 Sum_probs=264.2
Q ss_pred EEEEEecCC-------CCcCCCCCCCCC--CcEEEEEeEEEeCCCcEEecCcc----chHHHHHHHHHHHhcCCCceEEE
Q 036029 27 IRAGYWDSG-------DEFFISDVNSAL--FTHLMCGFADVNSTSYELSLSPS----DEKQFSNFTDTVKKKNPSITTLL 93 (359)
Q Consensus 27 ~~~~y~~~~-------~~~~~~~i~~~~--~Thii~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~lk~~~~~~kvll 93 (359)
+++|||+.| ..+.+++||... ||||+|+|+.++++++.+...+. ....+..+. .+|+++|++|+|+
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~lk~~~p~lKvll 79 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLNEDLDLDKSHYRAIT-SLKRKYPHLKVLL 79 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCCEEEecCcccchhhhHHHHHH-HHHhhCCCCeEEE
Confidence 478999883 256789999865 99999999999998877765443 235567776 6899999999999
Q ss_pred EEcCCCCCC----CcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCC-------------------------
Q 036029 94 SIGGGKNPN----YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANT------------------------- 144 (359)
Q Consensus 94 sigg~~~~~----~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~------------------------- 144 (359)
|||||...+ ++.|+.++++++.|++||++++++|++|+|||||||||+|..
T Consensus 80 SiGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~~l~~~~fDGidiDWEyP~~~~~~~~g~~~~~~~~~~~~~~g~~~ 159 (413)
T cd02873 80 SVGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFTGDSV 159 (413)
T ss_pred eecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeEeeeeCCCCcccccccccchhhhhhhcccccccc
Confidence 999997511 457999999999999999999999999999999999999852
Q ss_pred -----CcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeecCCCccccccCHhHHhccccEEEeecccccCCCCCC-
Q 036029 145 -----SWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTN- 218 (359)
Q Consensus 145 -----~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~~vD~i~vm~yd~~~~~~~~- 218 (359)
++|+++|+.||++||++|+..+ ++|++++++.... ...||+++|.++||+||||+||+|++|..+
T Consensus 160 ~~~~~~~d~~nf~~Ll~elr~~l~~~~--------~~ls~av~~~~~~-~~~~d~~~l~~~vD~inlMtYD~~g~~~~~~ 230 (413)
T cd02873 160 VDEKAAEHKEQFTALVRELKNALRPDG--------LLLTLTVLPHVNS-TWYFDVPAIANNVDFVNLATFDFLTPERNPE 230 (413)
T ss_pred cCCCChhHHHHHHHHHHHHHHHhcccC--------cEEEEEecCCchh-ccccCHHHHhhcCCEEEEEEecccCCCCCCC
Confidence 3578999999999999998764 5888887643221 224899999999999999999999998654
Q ss_pred CCCCCCccc--------ccHHHHHHHHHHCCCCCCceeeecccceeeeeecCCCC-CCCC--cccC-----CCCCCCCcc
Q 036029 219 HTSAPAALV--------FNTEYGITAWTDEGLSADKLVLGLPCYGYAWTLVKPED-NGIG--AAAT-----GPALSDIGF 282 (359)
Q Consensus 219 ~~~~~spl~--------~~~~~~~~~~~~~g~~~~Kl~lGlp~yG~~~~~~~~~~-~~~~--~~~~-----~~~~~~~g~ 282 (359)
.+++++||+ .+++.+++.|++.|+|++||+||||||||.|+++++.. .+.+ +++. |+.++++|.
T Consensus 231 ~~~~~apL~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~w~l~~~~~~~g~~~~~~~~g~~~~G~~~~~~g~ 310 (413)
T cd02873 231 EADYTAPIYELYERNPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWKLTKDSGITGVPPVLETDGPGPAGPQTKTPGL 310 (413)
T ss_pred ccCcCCccCCCccccccccHHHHHHHHHHcCCCHHHeEEEEecceeeeEccCCCCCcCCCCCccCCCCCCCCCCcCCCcc
Confidence 689999997 37899999999999999999999999999999876532 2211 2232 344467899
Q ss_pred ccHHHHHHhhhhCC------CCccEEEeCCee-eeEEEe-------CCEEEEEcCHHHHHHHHHHHHHCCCcEEEEEEcc
Q 036029 283 VTYKEIKNYIKSYG------PNVPVMYNSTYV-MNYCSI-------GKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVA 348 (359)
Q Consensus 283 ~~y~~i~~~~~~~~------~~~~~~~d~~~~-~~y~~~-------~~~~i~ydd~~S~~~K~~~~~~~gl~Gv~iW~l~ 348 (359)
++|.|||+.+...+ ..++..||++.+ ++|.|. +++||+|||++|++.|++|++++||||+|+|+++
T Consensus 311 l~y~ei~~~~~~~~~~~g~~~~~~~~~d~~~~~~~y~y~~~d~~~~~~~wvsydd~~Si~~K~~y~~~~gLgGv~~W~l~ 390 (413)
T cd02873 311 LSWPEICSKLPNPANLKGADAPLRKVGDPTKRFGSYAYRPADENGEHGIWVSYEDPDTAANKAGYAKAKGLGGVALFDLS 390 (413)
T ss_pred ccHHHHHHhhccCccccccccceeEeecccccccceEEeccccCCCCCeEEEeCCHHHHHHHHHHHHhCCCceEEEEeee
Confidence 99999999875421 015577898876 588872 2579999999999999999999999999999999
Q ss_pred CCC--------chhhhhc
Q 036029 349 YDH--------DWMLSQA 358 (359)
Q Consensus 349 ~Dd--------~~~l~~a 358 (359)
+|| .++|++|
T Consensus 391 ~DD~~g~c~~~~~pll~~ 408 (413)
T cd02873 391 LDDFRGQCTGDKFPILRS 408 (413)
T ss_pred cCcCCCCcCCCCChHHHH
Confidence 998 3678776
No 4
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=6.9e-62 Score=457.70 Aligned_cols=311 Identities=33% Similarity=0.618 Sum_probs=271.1
Q ss_pred EEEEEecCCC----CcCCCCCCCCCCcEEEEEeEEEeCCCcEEecCccch--HHHHHHHHHHHhcCCCceEEEEEcCCCC
Q 036029 27 IRAGYWDSGD----EFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDE--KQFSNFTDTVKKKNPSITTLLSIGGGKN 100 (359)
Q Consensus 27 ~~~~y~~~~~----~~~~~~i~~~~~Thii~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~lk~~~~~~kvllsigg~~~ 100 (359)
+++|||++|. .|.+++++.++||||+|+|+.+++++ ++.+.++.. ..+..+. .+|+++|++|++++||||..
T Consensus 1 ~~~~Y~~~w~~~~~~~~~~~~~~~~~thv~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~-~l~~~~~~~kvl~svgg~~~ 78 (334)
T smart00636 1 RVVGYFTNWGVYGRNFPVDDIPASKLTHIIYAFANIDPDG-TVTIGDEWADIGNFGQLK-ALKKKNPGLKVLLSIGGWTE 78 (334)
T ss_pred CEEEEECchhccCCCCChhHCCcccCcEEEEeeeeeCCCC-CEeeCCcchhhhhHHHHH-HHHHhCCCCEEEEEEeCCCC
Confidence 4799999965 37899999999999999999999955 666554432 3566665 68888899999999999986
Q ss_pred CCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCC-cchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEE
Q 036029 101 PNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTS-WDNYNIGILFKEWRAAVALEARNNSSQSQLILTA 179 (359)
Q Consensus 101 ~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~-~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~ 179 (359)
++.|+.++.+++.|++|++++++++++|+|||||||||+|... .++++|+.||++||.+|++... + +.+++||+
T Consensus 79 --s~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~~~~~--~-~~~~~lsi 153 (334)
T smart00636 79 --SDNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALDKEGA--E-GKGYLLTI 153 (334)
T ss_pred --CcchhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHHHhcc--c-CCceEEEE
Confidence 7889999999999999999999999999999999999999753 6889999999999999987521 1 22489999
Q ss_pred EeecCCCccccccC-HhHHhccccEEEeecccccCCCCCCCCCCCCcccc--------cHHHHHHHHHHCCCCCCceeee
Q 036029 180 RVAYSPYSTIGAYS-IDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVF--------NTEYGITAWTDEGLSADKLVLG 250 (359)
Q Consensus 180 ~~~~~~~~~~~~~~-~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl~~--------~~~~~~~~~~~~g~~~~Kl~lG 250 (359)
++|+.+......|+ ++++.+++|+|+||+||++++|. ..++++||++. +++.+++.|++.|+|++||+||
T Consensus 154 ~v~~~~~~~~~~~~~~~~l~~~vD~v~vm~YD~~~~~~-~~~g~~spl~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlG 232 (334)
T smart00636 154 AVPAGPDKIDKGYGDLPAIAKYLDFINLMTYDFHGAWS-NPTGHNAPLYAGPGDPEKYNVDYAVKYYLCKGVPPSKLVLG 232 (334)
T ss_pred EecCChHHHHhhhhhHHHHHhhCcEEEEeeeccCCCCC-CCCCCCCcCCCCCCCCCCccHHHHHHHHHHcCCCHHHeEEe
Confidence 99977655444578 69999999999999999999874 47899999972 6999999999999999999999
Q ss_pred cccceeeeeecCCCCCCCCcccCCCCC-----CCCccccHHHHHHhhhhCCCCccEEEeCCeeeeEEEe-C-CEEEEEcC
Q 036029 251 LPCYGYAWTLVKPEDNGIGAAATGPAL-----SDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSI-G-KIWFGFDD 323 (359)
Q Consensus 251 lp~yG~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~-~-~~~i~ydd 323 (359)
|||||+.|++.++.++++++|+.+++. ..+|.++|.|||+.+ + +...||+.+.++|.|. + ++||+|||
T Consensus 233 ip~YG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~y~ei~~~~---~--~~~~~d~~~~~~y~~~~~~~~~v~ydd 307 (334)
T smart00636 233 IPFYGRGWTLVDGSNNGPGAPFTGPATGGPGTWEGGVVDYREICKLL---G--ATVVWDDTAKAPYAYNPGTGQWVSYDD 307 (334)
T ss_pred eccccCccccCCCCcCCCCCcccCCCCCCCCCCcccchhHHHHHhhc---C--cEEEEcCCCceeEEEECCCCEEEEcCC
Confidence 999999999999888888888877543 467899999999965 6 8999999999999995 4 59999999
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEEccCC
Q 036029 324 VEAVRMKVAYAKEKKLRGYFVWKVAYD 350 (359)
Q Consensus 324 ~~S~~~K~~~~~~~gl~Gv~iW~l~~D 350 (359)
++|++.|+++++++||||+++|++++|
T Consensus 308 ~~Si~~K~~~~~~~~lgGv~iW~l~~D 334 (334)
T smart00636 308 PRSIKAKADYVKDKGLGGVMIWELDAD 334 (334)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeecCC
Confidence 999999999999999999999999998
No 5
>KOG2806 consensus Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.4e-61 Score=461.65 Aligned_cols=329 Identities=27% Similarity=0.499 Sum_probs=283.0
Q ss_pred CCcEEEEEecCCC-CcCCCCCCCCCCcEEEEEeEEEeCCCcEEecCccchHHHHHHHHHHHhcCCCceEEEEEcCCCCCC
Q 036029 24 QTLIRAGYWDSGD-EFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIGGGKNPN 102 (359)
Q Consensus 24 ~~~~~~~y~~~~~-~~~~~~i~~~~~Thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~ 102 (359)
+..+.+||+..+. ...+++++..+|||++|+|+.++.++..+...+.....+..+.+.+|.++|++|+|+|||||.+ +
T Consensus 56 c~~~~~~~~~~~~~~~~~~~~~~~~~TH~vfafa~~~~~~~~~~~~~~~~~~f~~~~~~~k~~n~~vK~llSIGG~~~-n 134 (432)
T KOG2806|consen 56 CEKSIVGYYPSRIGPETLEDQDPLKCTHLVYAFAKMKRVGYVVFCGARTMNRFSSYNQTAKSSNPTVKVMISIGGSHG-N 134 (432)
T ss_pred ccceeEEEeCCCCCCCCccccChhhcCcceEEEeeecccccEEeccchhhhhhHHHHHHHHhhCCCceEEEEecCCCC-C
Confidence 5577899998877 8899999999999999999999999877766666667788888899999999999999999943 5
Q ss_pred CcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecC-CCcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEe
Q 036029 103 YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWAN-TSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARV 181 (359)
Q Consensus 103 ~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~-~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~ 181 (359)
+..|+.+++|++.|+.||++++++|++|+|||||||||+|. .+.|+.+|..|++|||++|.++.+ .+.+...+|+.++
T Consensus 135 s~~fs~~~s~~~~r~~FI~Sii~fl~~~~fDGvDL~We~P~~~~~d~~~~~~~i~elr~~~~~~~~-~~~~~~~~l~~~v 213 (432)
T KOG2806|consen 135 SGLFSLVLSDRMIRAKFIESVVSFIKDYGFDGVDLAWEWPLFTPSDQLEFSRFIQELRSAFARETL-KSPDTAKVLEAVV 213 (432)
T ss_pred ccchhhhhcChHHHHHHHHHHHHHHHHcCCCceeeeeECCCCchhhHHHHHHHHHHHHHHHHHHhh-ccCCccceeeecc
Confidence 88999999999999999999999999999999999999995 458999999999999999998876 3333333455555
Q ss_pred ecCCC-ccccccCHhHHhccccEEEeecccccCCCCCC-CCCCCCccc---------ccHHHHHHHHHHCCCCCCceeee
Q 036029 182 AYSPY-STIGAYSIDSIRQYLNWVHVITAEYSRPMWTN-HTSAPAALV---------FNTEYGITAWTDEGLSADKLVLG 250 (359)
Q Consensus 182 ~~~~~-~~~~~~~~~~l~~~vD~i~vm~yd~~~~~~~~-~~~~~spl~---------~~~~~~~~~~~~~g~~~~Kl~lG 250 (359)
..++. .....||+++|.+++||||||+||++|+|..+ .++++||++ .+++.++++|+..|.||+||+||
T Consensus 214 ~~~~~~~~~~~ydi~~i~~~~DfiNi~syDf~gpw~~~~~tGp~aPl~~~~~~~~~~~Nvd~~~ky~~~~~~~~~Kl~~g 293 (432)
T KOG2806|consen 214 ADSKQSAYSDGYDYENLSKYVDFINIMSYDYYGPWSLPCFTGPPSPLYKGPSMTNPKMNVDSLLKYWTEKGLPPSKLVLA 293 (432)
T ss_pred ccCccchhhccCCHHHHHhhCCeEEEecccccCCCcCCCcCCCCcccCCCCcccccCcchhhhHHHHhhcCCCchheEEE
Confidence 54433 56667999999999999999999999999764 799999998 27999999999999999999999
Q ss_pred cccceeeeeecCCCCCCCCcccCCCC------CCCCccccHHHHHHhhhhCCCCccEEEeCCeeeeEEEe--CCEEEEEc
Q 036029 251 LPCYGYAWTLVKPEDNGIGAAATGPA------LSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSI--GKIWFGFD 322 (359)
Q Consensus 251 lp~yG~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~--~~~~i~yd 322 (359)
+||||+.|++++...+ ++.+..+++ ....|.++|.|||+.....+ ...||+.++++|+|+ +++||+||
T Consensus 294 ip~yg~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~ls~~ei~~~~~~~~---~~~~d~~~~~~Y~~~~~~~~wvtye 369 (432)
T KOG2806|consen 294 LPFYGRSWQLLEDSRS-SAAPPFGQAAPVSMRSKGGGYMSYPEICERKINTG---VTHWDEETQTPYLYNIPYDQWVTYE 369 (432)
T ss_pred EecceehhhhcCCcCC-CCCccCCCcccCccccccCceeeHHHHHHHhcccC---CceecCCceeeeEEecCCCeEEecC
Confidence 9999999999887554 443333322 24678999999999554433 689999999999998 99999999
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEEEccCCC-chhhhhc
Q 036029 323 DVEAVRMKVAYAKEKKLRGYFVWKVAYDH-DWMLSQA 358 (359)
Q Consensus 323 d~~S~~~K~~~~~~~gl~Gv~iW~l~~Dd-~~~l~~a 358 (359)
|++|++.|++||++++|||+++|++++|| .++++++
T Consensus 370 n~~Si~~K~~Yvk~~~lGGv~iW~vd~DD~~~~~~~~ 406 (432)
T KOG2806|consen 370 NERSIHIKADYAKDEGLGGVAIWNIDQDDESGSLLNA 406 (432)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEeccCCCCCCccccc
Confidence 99999999999999999999999999999 4655553
No 6
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=1.7e-61 Score=454.49 Aligned_cols=302 Identities=18% Similarity=0.364 Sum_probs=249.7
Q ss_pred EEEEEecCCC------CcCCCCCCCCCCcEEEEEeEEEeCCCcEEecCccchHHHHHHHHHHHhcCCCceEEEEEcCCCC
Q 036029 27 IRAGYWDSGD------EFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIGGGKN 100 (359)
Q Consensus 27 ~~~~y~~~~~------~~~~~~i~~~~~Thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~ 100 (359)
+++|||+.|. .+.+++||.++||||+|+|+.+++++ ++...+ ....+..+. .+ + ++|+++|||||..
T Consensus 1 ~~v~Y~~~w~~~r~~~~~~~~~i~~~~~THi~yaf~~~~~~g-~l~~~~-~~~~~~~~~-~~--k--~lkvllsiGG~~~ 73 (345)
T cd02878 1 KNIAYFEAYNLDRPCLNMDVTQIDTSKYTHIHFAFANITSDF-SVDVSS-VQEQFSDFK-KL--K--GVKKILSFGGWDF 73 (345)
T ss_pred CEEEEEChhhcCCCCCCCCHhHCCcccCCEEEEEeEeecCCC-eEeecc-cHHHHHHHH-hh--c--CcEEEEEEeCCCC
Confidence 4799999963 57799999999999999999999875 665543 234444443 23 2 3999999999986
Q ss_pred CCC-----cccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCC----------CcchhhHHHHHHHHHHHHHHH
Q 036029 101 PNY-----STYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANT----------SWDNYNIGILFKEWRAAVALE 165 (359)
Q Consensus 101 ~~~-----~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~----------~~~~~~~~~ll~~l~~~l~~~ 165 (359)
+. ..|+.++ ++++|++|++++++++++|+|||||||||+|.. ++|+++|+.||++||++|+.
T Consensus 74 -s~~~~~~~~f~~~~-~~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~l~~- 150 (345)
T cd02878 74 -STSPSTYQIFRDAV-KPANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKLPS- 150 (345)
T ss_pred -CCCCccchhhHhhc-CHHHHHHHHHHHHHHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCc-
Confidence 22 1478888 999999999999999999999999999999863 35899999999999999975
Q ss_pred hhcCCCCceEEEEEEeecCCCccccccCHhHHhccccEEEeecccccCCCCCCCCCCCCc-------cc-----ccHHHH
Q 036029 166 ARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAA-------LV-----FNTEYG 233 (359)
Q Consensus 166 ~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~sp-------l~-----~~~~~~ 233 (359)
+ ++||+++|+.+... ..|+++++.+++|+||||+||+|++|... +.+++| +. .+++.+
T Consensus 151 ~--------~~ls~a~~~~~~~~-~~yd~~~l~~~vD~i~vMtYD~~g~w~~~-~~~~~p~~p~~~~~~~~~~~~~~~~~ 220 (345)
T cd02878 151 G--------KSLSIAAPASYWYL-KGFPIKDMAKYVDYIVYMTYDLHGQWDYG-NKWASPGCPAGNCLRSHVNKTETLDA 220 (345)
T ss_pred C--------cEEEEEcCCChhhh-cCCcHHHHHhhCcEEEEEeecccCCcCcc-CCcCCCCCCcccccccCCCchhHHHH
Confidence 2 68999998765432 35899999999999999999999998632 222222 11 257889
Q ss_pred HHHHHHCCCCCCceeeecccceeeeeecCCCCCCCCcccCCCCC--------CCCccccHHHHHHhh-hhCCCCccEEEe
Q 036029 234 ITAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNGIGAAATGPAL--------SDIGFVTYKEIKNYI-KSYGPNVPVMYN 304 (359)
Q Consensus 234 ~~~~~~~g~~~~Kl~lGlp~yG~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~y~~i~~~~-~~~~~~~~~~~d 304 (359)
++.|++.|+|++||+||+|||||.|+++++.++++++|+.|++. +..|.+.|.|+|..+ ...+ ++..||
T Consensus 221 v~~~~~~Gvp~~KlvlGip~YGr~~~l~~~~~~~~~~p~~g~~~~~~~g~~~~~~g~~~~~e~~~~~~~~~~--~~~~~d 298 (345)
T cd02878 221 LSMITKAGVPSNKVVVGVASYGRSFKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGAISEIEIIDISKSK--NKRWYD 298 (345)
T ss_pred HHHHHHcCCCHHHeEEeeccccceeeccCCCCCCCCCcccCCCCCCCCCCCCCchhhhhHHHHHHHHhccCC--CcEEEe
Confidence 99999999999999999999999999999999999999987642 344556669999855 4456 899999
Q ss_pred CCeeeeEE-EeCCEEEEEcCHHHHHHHHHHHHHCCCcEEEEEEccCC
Q 036029 305 STYVMNYC-SIGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350 (359)
Q Consensus 305 ~~~~~~y~-~~~~~~i~ydd~~S~~~K~~~~~~~gl~Gv~iW~l~~D 350 (359)
+.+.+||+ +.+++||+|||++|++.|++|++++||||+|+|++++|
T Consensus 299 ~~~~~~y~~~~~~~wv~ydd~~Si~~K~~y~~~~~LgGv~~W~ld~~ 345 (345)
T cd02878 299 TDSDSDILVYDDDQWVAYMSPATKAARIEWYKGLNFGGTSDWAVDLQ 345 (345)
T ss_pred cCCCccEEEEcCCEEEEcCCHHHHHHHHHHHHhCCCceEEEeeccCC
Confidence 99999998 56779999999999999999999999999999999987
No 7
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-61 Score=443.37 Aligned_cols=327 Identities=23% Similarity=0.411 Sum_probs=263.5
Q ss_pred CCCcEEEEEecCCC-----CcCCCCCCCCCCcEEEEEeEEEeCCCcEEe----c----------------C--ccchHHH
Q 036029 23 AQTLIRAGYWDSGD-----EFFISDVNSALFTHLMCGFADVNSTSYELS----L----------------S--PSDEKQF 75 (359)
Q Consensus 23 ~~~~~~~~y~~~~~-----~~~~~~i~~~~~Thii~~~~~~~~~~~~~~----~----------------~--~~~~~~~ 75 (359)
..+.++++||++|+ .|.+.+||.+++|||+|+|+.+++++..+. . + ++....+
T Consensus 35 d~~~rvvgYY~sWs~~d~~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~~~G~~ 114 (441)
T COG3325 35 DDQFKVVGYYTSWSQYDRQDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPLKGHF 114 (441)
T ss_pred CCCceEEEEecccccCCCcccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeeccccccccchH
Confidence 35678999999954 567899999999999999999999884211 0 0 0022334
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCC---------Cc
Q 036029 76 SNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANT---------SW 146 (359)
Q Consensus 76 ~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~---------~~ 146 (359)
..+. .+|++.|++|+++|||||+. |..|+.++.+.++|++|+.+++++|++|+|||||||||||++ +.
T Consensus 115 ~~L~-~lk~~~~d~k~l~SIGGWs~--S~~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~~~ 191 (441)
T COG3325 115 GALF-DLKATYPDLKTLISIGGWSD--SGGFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPK 191 (441)
T ss_pred HHHH-HHhhhCCCceEEEeeccccc--CCCcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCCcc
Confidence 5554 69999999999999999997 999999999999999999999999999999999999999984 46
Q ss_pred chhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeecCCCccccccCHhHHhccccEEEeecccccCCCCCCCCCCCCcc
Q 036029 147 DNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAAL 226 (359)
Q Consensus 147 ~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl 226 (359)
++++|+.||++||++|...+. +++++ |+||+|.|+++.... ..+..++.++|||||+|||||||.| ...++||+||
T Consensus 192 d~~ny~~Ll~eLR~~LD~a~~-edgr~-Y~LTiA~~as~~~l~-~~~~~~~~~~vDyiNiMTYDf~G~W-n~~~Gh~a~L 267 (441)
T COG3325 192 DKANYVLLLQELRKKLDKAGV-EDGRH-YQLTIAAPASKDKLE-GLNHAEIAQYVDYINIMTYDFHGAW-NETLGHHAAL 267 (441)
T ss_pred cHHHHHHHHHHHHHHHhhccc-ccCce-EEEEEecCCchhhhh-cccHHHHHHHHhhhheeeeeccccc-cccccccccc
Confidence 889999999999999998875 66664 999999999887666 6788999999999999999999997 6789999999
Q ss_pred c----------------ccHH--HHHHHHHHCCCCCCceeeecccceeeeeecCCCCCC----CCcccCC--CC--CCCC
Q 036029 227 V----------------FNTE--YGITAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNG----IGAAATG--PA--LSDI 280 (359)
Q Consensus 227 ~----------------~~~~--~~~~~~~~~g~~~~Kl~lGlp~yG~~~~~~~~~~~~----~~~~~~~--~~--~~~~ 280 (359)
| ..++ .-++...+.++||+||+||+|||||.|..+++...+ ..+...+ +. ++..
T Consensus 268 y~~~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~YgRgw~~v~~~~~~~~~~~~q~~~n~g~~~Gtw~a 347 (441)
T COG3325 268 YGTPKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVDGGSLGTCPGLYQGLDNSGIPKGTWEA 347 (441)
T ss_pred ccCCCCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeeccccccccccccCcccCCCCCcccccCCCCCCCCcccc
Confidence 9 1111 234444567899999999999999999988875532 2222221 11 1111
Q ss_pred c--cccHH---HHHH-hhhhCCCCccEEEeCCeeeeEEE--eCCEEEEEcCHHHHHHHHHHHHHCCCcEEEEEEccCCCc
Q 036029 281 G--FVTYK---EIKN-YIKSYGPNVPVMYNSTYVMNYCS--IGKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYDHD 352 (359)
Q Consensus 281 g--~~~y~---~i~~-~~~~~~~~~~~~~d~~~~~~y~~--~~~~~i~ydd~~S~~~K~~~~~~~gl~Gv~iW~l~~Dd~ 352 (359)
+ ...|. .+-. .....+ +.+.||+..++||+| ..+++|||||++||+.|++||++++|||+|+|++++|-+
T Consensus 348 ~n~~~~~~~~~~l~~n~~~~~g--~~~~~d~~a~apyL~n~~~~vFiSyDd~rSvkaK~eYv~~n~LGG~m~We~sgD~n 425 (441)
T COG3325 348 GNGDKDYGKAYDLDANNAGKNG--YERYWDDVAKAPYLYNPEKGVFISYDDPRSVKAKAEYVADNNLGGMMFWEISGDEN 425 (441)
T ss_pred cccCccchhhccccccccCCCC--eeEecccccccceeecCCCCeEEEccCCcchhhHHHHHhhcCccceEEEEecCCcc
Confidence 1 11221 2222 223345 999999999999999 678999999999999999999999999999999999999
Q ss_pred hhhhhc
Q 036029 353 WMLSQA 358 (359)
Q Consensus 353 ~~l~~a 358 (359)
+.|++|
T Consensus 426 ~~llna 431 (441)
T COG3325 426 GVLLNA 431 (441)
T ss_pred hhHHHH
Confidence 999986
No 8
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=6e-60 Score=440.99 Aligned_cols=278 Identities=26% Similarity=0.504 Sum_probs=241.4
Q ss_pred EEEEecCCCCcCC----C-CCCCCCCcEEEEEeEEEeCCCcEEecC-------------------ccchHHHHHHHHHHH
Q 036029 28 RAGYWDSGDEFFI----S-DVNSALFTHLMCGFADVNSTSYELSLS-------------------PSDEKQFSNFTDTVK 83 (359)
Q Consensus 28 ~~~y~~~~~~~~~----~-~i~~~~~Thii~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~lk 83 (359)
++|||++|..+.. . +||.++||||+|+|+.+++++..+... +.....+..+. .+|
T Consensus 1 v~~Y~~~W~~~~~~~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lk 79 (322)
T cd06548 1 VVGYFTNWGIYGRNYFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLR-KLK 79 (322)
T ss_pred CEEEeCCCcccCCCCCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHHH-HHH
Confidence 5899999765543 3 588999999999999999988665432 12345566776 689
Q ss_pred hcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCC---------CcchhhHHHH
Q 036029 84 KKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANT---------SWDNYNIGIL 154 (359)
Q Consensus 84 ~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~---------~~~~~~~~~l 154 (359)
+++|++||+++||||+. ++.|+.++++++.|++|+++++++|++|+|||||||||+|.. ++++++|+.|
T Consensus 80 ~~~p~lkvl~siGG~~~--s~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~l 157 (322)
T cd06548 80 QKNPHLKILLSIGGWTW--SGGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLL 157 (322)
T ss_pred HhCCCCEEEEEEeCCCC--CCCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHHHH
Confidence 99999999999999986 789999999999999999999999999999999999999975 4789999999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEEEeecCCCccccccCHhHHhccccEEEeecccccCCCCCCCCCCCCccc-------
Q 036029 155 FKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALV------- 227 (359)
Q Consensus 155 l~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl~------- 227 (359)
|++||++|+..+. .+++ +++||+++|+.+.... .++++++.++||+|+||+||++++|. ..++++|||+
T Consensus 158 l~~Lr~~l~~~~~-~~~~-~~~Ls~av~~~~~~~~-~~~~~~l~~~vD~vnlMtYD~~g~w~-~~~g~~spL~~~~~~~~ 233 (322)
T cd06548 158 LKELREALDALGA-ETGR-KYLLTIAAPAGPDKLD-KLEVAEIAKYLDFINLMTYDFHGAWS-NTTGHHSNLYASPADPP 233 (322)
T ss_pred HHHHHHHHHHhhh-ccCC-ceEEEEEccCCHHHHh-cCCHHHHhhcCCEEEEEEeeccCCCC-CCCCCCCCCCCCCCCCC
Confidence 9999999998642 2222 3899999997654332 47899999999999999999999985 6789999986
Q ss_pred --ccHHHHHHHHHHCCCCCCceeeecccceeeeeecCCCCCCCCcccCCCCCCCCccccHHHHHHhhhhCCCCccEEEeC
Q 036029 228 --FNTEYGITAWTDEGLSADKLVLGLPCYGYAWTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNS 305 (359)
Q Consensus 228 --~~~~~~~~~~~~~g~~~~Kl~lGlp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~ 305 (359)
.+++.+++.|++.|+|++||+||||+|||.|++ ++..||+
T Consensus 234 ~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~~~~--------------------------------------~~~~~D~ 275 (322)
T cd06548 234 GGYSVDAAVNYYLSAGVPPEKLVLGVPFYGRGWTG--------------------------------------YTRYWDE 275 (322)
T ss_pred CCccHHHHHHHHHHcCCCHHHeEEEecccccccCC--------------------------------------cEEEEcC
Confidence 368999999999999999999999999999963 4579999
Q ss_pred CeeeeEEEeC--CEEEEEcCHHHHHHHHHHHHHCCCcEEEEEEccCC
Q 036029 306 TYVMNYCSIG--KIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350 (359)
Q Consensus 306 ~~~~~y~~~~--~~~i~ydd~~S~~~K~~~~~~~gl~Gv~iW~l~~D 350 (359)
.+.+||.+++ ++||+|||++|++.|++|++++||||+|+|++++|
T Consensus 276 ~~~~~y~~~~~~~~~v~ydd~~Si~~K~~~a~~~~LgGv~~W~l~~D 322 (322)
T cd06548 276 VAKAPYLYNPSTKTFISYDDPRSIKAKADYVKDKGLGGVMFWELSGD 322 (322)
T ss_pred CcceeEEEeCCCCeEEEeCCHHHHHHHHHHHHhcCCccEEEEeccCC
Confidence 9999999966 89999999999999999999999999999999998
No 9
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=100.00 E-value=6.8e-56 Score=418.66 Aligned_cols=315 Identities=31% Similarity=0.565 Sum_probs=265.3
Q ss_pred cEEEEEecCCCC-----cCCCCCCCCCCcEEEEEeEEEeCCCcEEe------cCccchHHHHHHHHHHHhcCCCceEEEE
Q 036029 26 LIRAGYWDSGDE-----FFISDVNSALFTHLMCGFADVNSTSYELS------LSPSDEKQFSNFTDTVKKKNPSITTLLS 94 (359)
Q Consensus 26 ~~~~~y~~~~~~-----~~~~~i~~~~~Thii~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~lk~~~~~~kvlls 94 (359)
++++|||+.|.. +.+++++.+.||||+|+|+.+++++.... ........+..+ ..+|+++|++||+++
T Consensus 1 ~~vv~Y~~~~~~~~~~~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kvlls 79 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPGSYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPWNFDDDNDGDSSGFKNL-KELKAKNPGVKVLLS 79 (343)
T ss_dssp BEEEEEEEGGGGSSTGCSHGGGSHTTTESEEEEEEEEEETTTTEEEGTTTECSSTTHHHHHHHH-HHHHHHHTT-EEEEE
T ss_pred CEEEEEECCcCCCCCCCCCHHHCCcccCCEEEEEeeeecCCCceecccccccccCccccchhHH-HHHHhhccCceEEEE
Confidence 579999999643 66889999999999999999999886642 233344455555 468888899999999
Q ss_pred EcCCCCCCCc-ccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCC---cchhhHHHHHHHHHHHHHHHhhcCC
Q 036029 95 IGGGKNPNYS-TYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTS---WDNYNIGILFKEWRAAVALEARNNS 170 (359)
Q Consensus 95 igg~~~~~~~-~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~---~~~~~~~~ll~~l~~~l~~~~~~~~ 170 (359)
|||+.. +. .|..++.+++.|++|+++++++|++|+|||||||||++... +++.+|..||++||.+|++..+..
T Consensus 80 igg~~~--~~~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~- 156 (343)
T PF00704_consen 80 IGGWGM--SSDGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKALKRANRSG- 156 (343)
T ss_dssp EEETTS--SHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred eccccc--cccccccccccHHHHHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhhccccccc-
Confidence 999986 65 89999999999999999999999999999999999999763 599999999999999999863100
Q ss_pred CCceEEEEEEeecCCCccccccCHhHHhccccEEEeecccccCCCCCCCCCCCCccc--------ccHHHHHHHHHHCCC
Q 036029 171 SQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALV--------FNTEYGITAWTDEGL 242 (359)
Q Consensus 171 ~~~~~~ls~~~~~~~~~~~~~~~~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl~--------~~~~~~~~~~~~~g~ 242 (359)
.+++||+++|+.+.... .++++++.++||+|++|+||++++|.+ .+++++|++ .+++.+++.|+..|+
T Consensus 157 --~~~~ls~a~p~~~~~~~-~~~~~~l~~~vD~v~~m~yD~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~g~ 232 (343)
T PF00704_consen 157 --KGYILSVAVPPSPDYYD-KYDYKELAQYVDYVNLMTYDYHGPWSD-VTGPNAPLYDSSWDSNYYSVDSAVQYWIKAGV 232 (343)
T ss_dssp --STSEEEEEEECSHHHHT-THHHHHHHTTSSEEEEETTSSSSTTSS-BETTSSSSSHTTTSGTSSSHHHHHHHHHHTTS
T ss_pred --ceeEEeecccccccccc-ccccccccccccccccccccCCCCccc-ccccccccccCCccCCCceeeeehhhhccccC
Confidence 02799999997765333 348899999999999999999998755 888999987 258899999999999
Q ss_pred CCCceeeecccceeeeeecCCCCCCCCccc---CCCCCCCCccccHHHHHHhhhhCCCCccEEEeCCeeeeEEEeC--CE
Q 036029 243 SADKLVLGLPCYGYAWTLVKPEDNGIGAAA---TGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIG--KI 317 (359)
Q Consensus 243 ~~~Kl~lGlp~yG~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~--~~ 317 (359)
|++||+||+|+||+.|++.+...+...++. .+..+...+.++|.++|..+...+ +...||+.+.++|.+.. ++
T Consensus 233 p~~Kl~lglp~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~y~~~~~~~~ 310 (343)
T PF00704_consen 233 PPSKLVLGLPFYGRSWTLVNGSPNGPWGPAYWSPGKGTKNAGILSYYELCALLKSNG--YTVQWDDTAQAPYAYNDDKKH 310 (343)
T ss_dssp TGGGEEEEEESEEEEEESSSSTTSTTTBBEESEETTTTSBTTEEEHHHHHHHTHHTT--EEEEEETTTTEEEEEETTTTE
T ss_pred ChhheeecCCcccccceecCCcCCCCCCcccccccccccCCCccccccchhhcccCC--cceEEeecccceEEEecCCCe
Confidence 999999999999999999888776665544 344557779999999999988788 99999999999999966 79
Q ss_pred EEEEcCHHHHHHHHHHHHHCCCcEEEEEEccCC
Q 036029 318 WFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYD 350 (359)
Q Consensus 318 ~i~ydd~~S~~~K~~~~~~~gl~Gv~iW~l~~D 350 (359)
||+|||++|++.|++|++++||||+++|+|++|
T Consensus 311 ~i~~e~~~Si~~K~~~v~~~glgGv~~W~l~~D 343 (343)
T PF00704_consen 311 WISYEDPRSIKAKMDYVKEKGLGGVAIWSLDQD 343 (343)
T ss_dssp EEEE--HHHHHHHHHHHHHTT-SEEEEETGGGS
T ss_pred EEEeCCHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 999999999999999999999999999999998
No 10
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=100.00 E-value=4.5e-55 Score=407.70 Aligned_cols=291 Identities=18% Similarity=0.254 Sum_probs=240.4
Q ss_pred EEEEEecCCC--CcCCCCCCCCCCcEEEEEeEEEeCCCcEEecCccchHHHHHHHHHHHhcCCCceEE--EEEcCCCCCC
Q 036029 27 IRAGYWDSGD--EFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTL--LSIGGGKNPN 102 (359)
Q Consensus 27 ~~~~y~~~~~--~~~~~~i~~~~~Thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvl--lsigg~~~~~ 102 (359)
.++|||++|. .+.+.+++.++||||+++|+.++++++.+...+..... ...+..+|+++|++||+ +++|||+.
T Consensus 4 ~~~~y~~~W~~~~~~~~~~~~~~lthv~~~f~~i~~~g~~~~~~~~~~~~-~~~~~~lk~~~~~lkvlp~i~~gg~~~-- 80 (318)
T cd02876 4 PVLGYVTPWNSHGYDVAKKFAAKFTHVSPVWLQIKRKGNKFVIEGTHDID-KGWIEEVRKANKNIKILPRVLFEGWSY-- 80 (318)
T ss_pred ceEEEEcCcCccchHHHHHHhccCCEecceEEEEecCCCeeeeecCcchh-hHHHHHHHhhCCCcEEEeEEEECCCCH--
Confidence 4789999865 45677888999999999999999988665554321111 12345788888999999 77799873
Q ss_pred CcccccccCChhhHHHHHHHHHHHHHHcCcceEEEE-eeecCC---CcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEE
Q 036029 103 YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLS-WSWANT---SWDNYNIGILFKEWRAAVALEARNNSSQSQLILT 178 (359)
Q Consensus 103 ~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD-~E~~~~---~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls 178 (359)
+.|+.+++|++.|++|++++++++++||||||||| ||+|.. ++++++|+.||++||++|++.+ +.|+
T Consensus 81 -~~f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~~l~~~~--------~~l~ 151 (318)
T cd02876 81 -QDLQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLHSAN--------LKLI 151 (318)
T ss_pred -HHHHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHHHHhhcC--------CEEE
Confidence 46999999999999999999999999999999999 999864 3589999999999999999765 4777
Q ss_pred EEeecCCCc-----cccccCHhHHhccccEEEeecccccCCCCCCCCCCCCcccccHHHHHHHHHHCC-CCCCceeeecc
Q 036029 179 ARVAYSPYS-----TIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAWTDEG-LSADKLVLGLP 252 (359)
Q Consensus 179 ~~~~~~~~~-----~~~~~~~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~~~~g-~~~~Kl~lGlp 252 (359)
+++|+.... ....||+++|.+++|+|+||+||+|++ +.++++||++ +++.+++.+++.| +|++||+||||
T Consensus 152 ~~v~~~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~---~~~g~~apl~-~v~~~v~~~~~~~~vp~~KlvlGip 227 (318)
T cd02876 152 LVIPPPREKGNQNGLFTRKDFEKLAPHVDGFSLMTYDYSSP---QRPGPNAPLS-WVRSCLELLLPESGKKRAKILLGLN 227 (318)
T ss_pred EEEcCccccccccccccccCHHHHHhhccEEEEEeeccCCC---CCCCCCCCcH-HHHHHHHHHHhcCCCCHHHeEEecc
Confidence 777754321 223579999999999999999999985 5789999998 9999999999987 99999999999
Q ss_pred cceeeeeecCCCCCCCCcccCCCCCCCCccccHHHHHHhhhhCCCCccEEEeCCeeee-EEEeC---CEEEEEcCHHHHH
Q 036029 253 CYGYAWTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMN-YCSIG---KIWFGFDDVEAVR 328 (359)
Q Consensus 253 ~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~-y~~~~---~~~i~ydd~~S~~ 328 (359)
||||.|++.+ .+ +.+++.+.++++...+ ++..||+.+..+ |.|.+ ++||+|||++|++
T Consensus 228 ~YG~~w~~~~-----~~-----------~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~y~~~~~~~~v~ydd~~Si~ 289 (318)
T cd02876 228 FYGNDYTLPG-----GG-----------GAITGSEYLKLLKSNK--PKLQWDEKSAEHFFEYKNKGGKHAVFYPTLKSIQ 289 (318)
T ss_pred ccccccccCC-----CC-----------ceeehHHHHHHHHhcC--CCceeccCCCcceEEEecCCCcEEEEeCCHHHHH
Confidence 9999998643 11 2334455556565667 889999996555 66744 7999999999999
Q ss_pred HHHHHHHHCCCcEEEEEEccCCCc
Q 036029 329 MKVAYAKEKKLRGYFVWKVAYDHD 352 (359)
Q Consensus 329 ~K~~~~~~~gl~Gv~iW~l~~Dd~ 352 (359)
.|+++++++|+ |+|+|+++++++
T Consensus 290 ~K~~~a~~~~l-Gv~~W~lg~~~~ 312 (318)
T cd02876 290 LRLDLAKELGT-GISIWELGQGLD 312 (318)
T ss_pred HHHHHHHHcCC-cEEEEcccCCch
Confidence 99999999999 999999999974
No 11
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=100.00 E-value=1.9e-52 Score=393.71 Aligned_cols=292 Identities=20% Similarity=0.217 Sum_probs=234.8
Q ss_pred CcEEEEEecCCCCcCCCCCCCCCCcEEEEEeEEEeCCCcEEecCccchHHHHHHHHHHHhcCCCceEEEEEcCCCCCCCc
Q 036029 25 TLIRAGYWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYS 104 (359)
Q Consensus 25 ~~~~~~y~~~~~~~~~~~i~~~~~Thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~ 104 (359)
.+.++||.... ......+++.+|||..+- +.+ ..++..+|++ ++||+++ ++..
T Consensus 35 ~~~~~~~~~~~--~~~~~~~~~~~tti~~~~-------------~~~----~~~~~~A~~~--~v~v~~~-~~~~----- 87 (358)
T cd02875 35 RFEFLVFSVNS--TNYPNYDWSKVTTIAIFG-------------DID----DELLCYAHSK--GVRLVLK-GDVP----- 87 (358)
T ss_pred ceEEEEEEeCC--CcCcccccccceEEEecC-------------CCC----HHHHHHHHHc--CCEEEEE-CccC-----
Confidence 46789998753 455678899999998771 111 1355445554 8999987 2221
Q ss_pred ccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCC--CcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEee
Q 036029 105 TYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANT--SWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVA 182 (359)
Q Consensus 105 ~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~ 182 (359)
...+.|+++|++|++++++++++|||||||||||+|.. +.++++|+.||++||++|+++++ +++||++++
T Consensus 88 --~~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~~~~~------~~~Lsvav~ 159 (358)
T cd02875 88 --LEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFKKENP------GYQISFDVA 159 (358)
T ss_pred --HHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHhhcCC------CcEEEEEEe
Confidence 23577999999999999999999999999999999974 46899999999999999997643 378999998
Q ss_pred cCCCcccc-ccCHhHHhccccEEEeecccccCC-CC-CCCCCCCCcccccHHHHHHHHHHCCCCCCceeeecccceeeee
Q 036029 183 YSPYSTIG-AYSIDSIRQYLNWVHVITAEYSRP-MW-TNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWT 259 (359)
Q Consensus 183 ~~~~~~~~-~~~~~~l~~~vD~i~vm~yd~~~~-~~-~~~~~~~spl~~~~~~~~~~~~~~g~~~~Kl~lGlp~yG~~~~ 259 (359)
+.+..... .||+++|.++||+|+||+||+|++ |. ...+++++|+. +++.+++.|++.|+|++||+||+|+|||+|+
T Consensus 160 ~~p~~~~~~~yd~~~l~~~vD~v~lMtYD~h~~~w~~~~~~g~~ap~~-~v~~~v~~~~~~gvp~~KLvLGip~YGr~w~ 238 (358)
T cd02875 160 WSPSCIDKRCYDYTGIADASDFLVVMDYDEQSQIWGKECIAGANSPYS-QTLSGYNNFTKLGIDPKKLVMGLPWYGYDYP 238 (358)
T ss_pred cCcccccccccCHHHHHhhCCEeeEEeecccCCCCCCCCCCCCCCCch-hHHHHHHHHHHcCCCHHHeEEEeCCCCCcee
Confidence 76654443 399999999999999999999975 54 34688999997 8999999999999999999999999999998
Q ss_pred ecCCC-----CCCCCcccCCCCC--CCCccccHHHHHHhhhhCCCCccEEEeCCeeeeEEE-e---C-CEEEEEcCHHHH
Q 036029 260 LVKPE-----DNGIGAAATGPAL--SDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCS-I---G-KIWFGFDDVEAV 327 (359)
Q Consensus 260 ~~~~~-----~~~~~~~~~~~~~--~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~-~---~-~~~i~ydd~~S~ 327 (359)
+.++. |..++.|..|+.. ..++.++|.|||+.+++.+ +...||+.+++||++ . + .+||+|||++|+
T Consensus 239 ~~~~~~~~~~~~~~~~p~~g~~~~~~~g~~i~Y~ei~~~~~~~~--~~~~wD~~~~~py~~y~d~~g~~~~V~ydD~~Si 316 (358)
T cd02875 239 CLNGNLEDVVCTIPKVPFRGANCSDAAGRQIPYSEIMKQINSSI--GGRLWDSEQKSPFYNYKDKQGNLHQVWYDNPQSL 316 (358)
T ss_pred CCCCcccCcccCCCCCCcCCCCCcCCCCCccCHHHHHHHHhcCC--CceeeccccccceEEEecCCCcEEEEEeCCHHHH
Confidence 76554 2223334443321 2345799999999887777 789999999999984 2 2 269999999999
Q ss_pred HHHHHHHHHCCCcEEEEEEccCCCchh
Q 036029 328 RMKVAYAKEKKLRGYFVWKVAYDHDWM 354 (359)
Q Consensus 328 ~~K~~~~~~~gl~Gv~iW~l~~Dd~~~ 354 (359)
+.|++|++++||||+++|++++||...
T Consensus 317 ~~K~~~a~~~gL~Gv~iW~ld~dD~~g 343 (358)
T cd02875 317 SIKVAYAKNLGLKGIGMWNGDLLDYSG 343 (358)
T ss_pred HHHHHHHHhCCCCeEEEEeccccccCC
Confidence 999999999999999999999998433
No 12
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=100.00 E-value=2.5e-51 Score=382.17 Aligned_cols=294 Identities=20% Similarity=0.347 Sum_probs=241.8
Q ss_pred EEEEEecCCCCc--CCCCCCCCCCcEEEEEeEEEeCCCcEEecCccchHHHHHHHHHHHhcCCCceEEEEEcCCCC--CC
Q 036029 27 IRAGYWDSGDEF--FISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIGGGKN--PN 102 (359)
Q Consensus 27 ~~~~y~~~~~~~--~~~~i~~~~~Thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~--~~ 102 (359)
.++||+.++... ...+-..+++|||++.++.+.++|. +.. ... .+++..+|++ ++|++++|||+.. .+
T Consensus 3 ~~~g~~~~~~~~~~~~~~~~~~~lt~v~p~w~~~~~~g~-~~~--~~~---~~~~~~a~~~--~~kv~~~i~~~~~~~~~ 74 (313)
T cd02874 3 EVLGYYTPRNGSDYESLRANAPYLTYIAPFWYGVDADGT-LTG--LPD---ERLIEAAKRR--GVKPLLVITNLTNGNFD 74 (313)
T ss_pred eEEEEEecCCCchHHHHHHhcCCCCEEEEEEEEEcCCCC-CCC--CCC---HHHHHHHHHC--CCeEEEEEecCCCCCCC
Confidence 478999885543 3444466899999999999999773 322 211 3466556665 8999999999861 13
Q ss_pred CcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEee
Q 036029 103 YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVA 182 (359)
Q Consensus 103 ~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~ 182 (359)
++.++.++.|++.|++|++++++++++|||||||||||++.. +++++|+.||++||.+|++.+ ++|+++++
T Consensus 75 ~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~-~d~~~~~~fl~~lr~~l~~~~--------~~lsv~~~ 145 (313)
T cd02874 75 SELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVPP-EDREAYTQFLRELSDRLHPAG--------YTLSTAVV 145 (313)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCH-HHHHHHHHHHHHHHHHhhhcC--------cEEEEEec
Confidence 567899999999999999999999999999999999999874 889999999999999998765 57888776
Q ss_pred cCCCc-----cccccCHhHHhccccEEEeecccccCCCCCCCCCCCCcccccHHHHHHHHHHCCCCCCceeeecccceee
Q 036029 183 YSPYS-----TIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYA 257 (359)
Q Consensus 183 ~~~~~-----~~~~~~~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~~~~g~~~~Kl~lGlp~yG~~ 257 (359)
+.... ....|+++++.+++|+|+||+||++++| +.++|++|+. .++..++.+. .|+|++||+||||+||+.
T Consensus 146 p~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~YD~~~~~--~~~gp~a~~~-~~~~~~~~~~-~gvp~~KlvlGip~YG~~ 221 (313)
T cd02874 146 PKTSADQFGNWSGAYDYAAIGKIVDFVVLMTYDWHWRG--GPPGPVAPIG-WVERVLQYAV-TQIPREKILLGIPLYGYD 221 (313)
T ss_pred CccccccccccccccCHHHHHhhCCEEEEEEeccCCCC--CCCCccCChH-HHHHHHHHHH-hcCCHHHEEEeecccccc
Confidence 54321 2245899999999999999999999985 4679999997 7888887665 789999999999999999
Q ss_pred eeecCCCCCCCCcccCCCCCCCCccccHHHHHHhhhhCCCCccEEEeCCeeeeEEE-e----CCEEEEEcCHHHHHHHHH
Q 036029 258 WTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCS-I----GKIWFGFDDVEAVRMKVA 332 (359)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~-~----~~~~i~ydd~~S~~~K~~ 332 (359)
|++.++. ....+.++|.++++++.+.+ +...||+.+++||.. . ..+||+|||++|++.|++
T Consensus 222 w~~~~~~------------~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~y~~~~g~~~~v~y~d~~Si~~K~~ 287 (313)
T cd02874 222 WTLPYKK------------GGKASTISPQQAINLAKRYG--AEIQYDEEAQSPFFRYVDEQGRRHEVWFEDARSLQAKFE 287 (313)
T ss_pred cccCCCC------------CcCccccCHHHHHHHHHHcC--CCeEECcccCCCcEEEEeCCCCEEEEEeCcHHHHHHHHH
Confidence 9865421 11236788999999998888 999999999999874 2 257999999999999999
Q ss_pred HHHHCCCcEEEEEEccCCCc--hhh
Q 036029 333 YAKEKKLRGYFVWKVAYDHD--WML 355 (359)
Q Consensus 333 ~~~~~gl~Gv~iW~l~~Dd~--~~l 355 (359)
+++++||||+++|++++||+ |.+
T Consensus 288 ~~~~~~lgGv~iW~lg~dD~~~w~~ 312 (313)
T cd02874 288 LAKEYGLRGVSYWRLGLEDPQNWLL 312 (313)
T ss_pred HHHHcCCCeEEEEECCCCCcccccc
Confidence 99999999999999999994 544
No 13
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=8.4e-48 Score=347.48 Aligned_cols=247 Identities=24% Similarity=0.493 Sum_probs=209.9
Q ss_pred EEEEecCCCCcC--CCCCCCCCCcEEEEEeEEEeCCCcEEecCccchHHHHHHHHHHHhcCCCceEEEEEcCCCCCCCcc
Q 036029 28 RAGYWDSGDEFF--ISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYST 105 (359)
Q Consensus 28 ~~~y~~~~~~~~--~~~i~~~~~Thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~ 105 (359)
++|||++|+.+. +++++..+||||+++|+.++++| ++...+. ...+..+++.+|+ +++||+++|||+.. +.
T Consensus 1 vigyy~~w~~~~~~~~~~~~~~lThv~~~f~~i~~~G-~l~~~~~-~~~~~~~~~~~~~--~~~kvl~sigg~~~---~~ 73 (253)
T cd06545 1 VVGYLPNYDDLNALSPTIDFSKLTHINLAFANPDANG-TLNANPV-RSELNSVVNAAHA--HNVKILISLAGGSP---PE 73 (253)
T ss_pred CEEEeCCcccccCCcccCChhhCCeEEEEEEEECCCC-eEEecCc-HHHHHHHHHHHHh--CCCEEEEEEcCCCC---Cc
Confidence 589999987665 78999999999999999999877 5555432 2345566655655 48999999999874 34
Q ss_pred cccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeecCC
Q 036029 106 YSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSP 185 (359)
Q Consensus 106 ~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~ 185 (359)
+..++.+++.|++|++++++++++|+|||||||||+|.. . +++|..|+++||++++..+ +.|++++++..
T Consensus 74 ~~~~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~-~-~~~~~~fv~~Lr~~l~~~~--------~~lt~av~~~~ 143 (253)
T cd06545 74 FTAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDV-T-FGDYLVFIRALYAALKKEG--------KLLTAAVSSWN 143 (253)
T ss_pred chhhhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCc-c-HhHHHHHHHHHHHHHhhcC--------cEEEEEccCcc
Confidence 677899999999999999999999999999999999975 2 7899999999999998764 58999887542
Q ss_pred CccccccCHhHHhccccEEEeecccccCCCCCCCCCCCCcccccHHHHHHHHHHCCC-CCCceeeecccceeeeeecCCC
Q 036029 186 YSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAWTDEGL-SADKLVLGLPCYGYAWTLVKPE 264 (359)
Q Consensus 186 ~~~~~~~~~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~~~~g~-~~~Kl~lGlp~yG~~~~~~~~~ 264 (359)
.. .+ ..++.+++|+|+||+||++++|....+++++|+. +++++++.|+..|+ |++||+||+|+||+.|.
T Consensus 144 ~~---~~-~~~~~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~-~~~~~v~~~~~~g~ip~~KlvlGlp~YG~~w~----- 213 (253)
T cd06545 144 GG---AV-SDSTLAYFDFINIMSYDATGPWWGDNPGQHSSYD-DAVNDLNYWNERGLASKDKLVLGLPFYGYGFY----- 213 (253)
T ss_pred cc---cc-cHHHHhhCCEEEEEcCcCCCCCCCCCCCCCCchH-hHHHHHHHHHHcCCCCHHHEEEEeCCcccccc-----
Confidence 21 13 3677899999999999999998777789999987 89999999999998 99999999999998772
Q ss_pred CCCCCcccCCCCCCCCccccHHHHHHhhhhCCCCccEEEeCCeeeeEEEeCCEEEEEcCHHHHHHHHHHHHHCCCcEEEE
Q 036029 265 DNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGKIWFGFDDVEAVRMKVAYAKEKKLRGYFV 344 (359)
Q Consensus 265 ~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~ydd~~S~~~K~~~~~~~gl~Gv~i 344 (359)
|+++.++..|+++++++ +||+|+
T Consensus 214 --------------------------------------------------------~~~~~~~~~~~~~~~~~-~gG~~~ 236 (253)
T cd06545 214 --------------------------------------------------------YNGIPTIRNKVAFAKQN-YGGVMI 236 (253)
T ss_pred --------------------------------------------------------CCCHHHHHHHHHHHHHh-cCeEEE
Confidence 77788999999999999 999999
Q ss_pred EEccCCC--chhhhhc
Q 036029 345 WKVAYDH--DWMLSQA 358 (359)
Q Consensus 345 W~l~~Dd--~~~l~~a 358 (359)
|++++|. +.+|+.|
T Consensus 237 w~~~~d~~~~~~l~~~ 252 (253)
T cd06545 237 WELSQDASGENSLLNA 252 (253)
T ss_pred EeccCCCCCCcchhhc
Confidence 9999997 5788876
No 14
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=100.00 E-value=1.9e-46 Score=345.80 Aligned_cols=288 Identities=13% Similarity=0.136 Sum_probs=226.7
Q ss_pred EEEEecCCCCcCCC--CCCCCCCcEEEEEeEEEeCCCcEEecCccchHHHHHHHHHHHhcCCCceEEEEEcCCCCCCCcc
Q 036029 28 RAGYWDSGDEFFIS--DVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYST 105 (359)
Q Consensus 28 ~~~y~~~~~~~~~~--~i~~~~~Thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~ 105 (359)
++||+.+|.....+ ......+|||+..++.+...++.+.... +. ....++..+|++.|.++++.+++|+.. +++.
T Consensus 2 ~l~~~~~w~~~s~~sl~~~~~~l~~vsP~W~~~~~~~g~l~~~~-d~-~~~~~~~~~k~~~~~l~~~~~~~~~~~-~~~~ 78 (298)
T cd06549 2 ALAFYTPWDDASFASLKRHAPRLDWLVPEWLNLTGPEGRIDVFV-DP-QGVAIIAAAKAHPKVLPLVQNISGGAW-DGKN 78 (298)
T ss_pred eeEEEecCChhhHHHHHHhhccCCEEeceeEEEecCCCceeccC-Ch-HHHHHHHHHHcCCceeEEEEecCCCCC-CHHH
Confidence 68899886443333 2345789999999999985555665432 22 222344567777788999999987765 4567
Q ss_pred cccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeecCC
Q 036029 106 YSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSP 185 (359)
Q Consensus 106 ~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~ 185 (359)
|+.++.+++.|++|++++++++++|+|||||||||++.. +++++|+.||++||.+|+..+ +.|++++|+.+
T Consensus 79 ~~~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~~-~d~~~~~~fl~eL~~~l~~~~--------~~lsv~v~~~~ 149 (298)
T cd06549 79 IARLLADPSARAKFIANIAAYLERNQADGIVLDFEELPA-DDLPKYVAFLSELRRRLPAQG--------KQLTVTVPADE 149 (298)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCh-hHHHHHHHHHHHHHHHhhhcC--------cEEEEEecCCC
Confidence 999999999999999999999999999999999999864 899999999999999999865 58999998653
Q ss_pred CccccccCHhHHhccccEEEeecccccCCCCCCCCCCCCcccccHHHHHHHHHHCCCCCCceeeecccceeeeeecCCCC
Q 036029 186 YSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWTLVKPED 265 (359)
Q Consensus 186 ~~~~~~~~~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~~~~g~~~~Kl~lGlp~yG~~~~~~~~~~ 265 (359)
..||++.+.+++|+|+||+||+|+++ ..++|.+|.. .++..++.. ..|+|++||+||||+||+.|++....
T Consensus 150 ----~~~d~~~l~~~~D~v~lMtYD~~~~~--~~~gp~a~~~-~~~~~~~~~-~~~vp~~KlvlGip~YG~~w~~~~~~- 220 (298)
T cd06549 150 ----ADWNLKALARNADKLILMAYDEHYQG--GAPGPIASQD-WFESNLAQA-VKKLPPEKLIVALGSYGYDWTKGGNT- 220 (298)
T ss_pred ----CCCCHHHHHHhCCEEEEEEeccCCCC--CCCCCCCChh-hHHHHHHHH-HhCCCHHHEEEEecccCccccCCCCC-
Confidence 34889999999999999999999874 3567777765 666666654 46799999999999999999763211
Q ss_pred CCCCcccCCCCCCCCccccHHHHHHhhhhCCCCccEEEeCCeeee-EEE-e---CCEEEEEcCHHHHHHHHHHHHHCCCc
Q 036029 266 NGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMN-YCS-I---GKIWFGFDDVEAVRMKVAYAKEKKLR 340 (359)
Q Consensus 266 ~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~-y~~-~---~~~~i~ydd~~S~~~K~~~~~~~gl~ 340 (359)
..++..+...++.+.+ ....||+....+ |.+ + ..++|+|+|++|++.|+++++++||+
T Consensus 221 ---------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~h~Vw~~d~~Sl~~K~~~a~~~~l~ 283 (298)
T cd06549 221 ---------------KAISSEAAWLLAAHAS--AAVKFDDKASNATYFFYDDEGVSHEVWMLDAVTLFNQLKAVQRLGPA 283 (298)
T ss_pred ---------------cccCHHHHHHHHHHcC--CcceecccccCCceEEEcCCCcEEEEEeccHHHHHHHHHHHHHcCCC
Confidence 2334455555565666 677888766666 444 2 23799999999999999999999999
Q ss_pred EEEEEEccCCCch
Q 036029 341 GYFVWKVAYDHDW 353 (359)
Q Consensus 341 Gv~iW~l~~Dd~~ 353 (359)
|+++|++++||..
T Consensus 284 Gva~W~lg~ed~~ 296 (298)
T cd06549 284 GVALWRLGSEDPG 296 (298)
T ss_pred cEEEEeccCCCCC
Confidence 9999999999853
No 15
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=100.00 E-value=5.9e-37 Score=269.65 Aligned_cols=204 Identities=31% Similarity=0.560 Sum_probs=170.8
Q ss_pred EEEEecCCCCcCC---CCCCCCCCcEEEEEeEEEeCCCcEEecC-ccchHHHHHHHHHHHhcCCCceEEEEEcCCCCCCC
Q 036029 28 RAGYWDSGDEFFI---SDVNSALFTHLMCGFADVNSTSYELSLS-PSDEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNY 103 (359)
Q Consensus 28 ~~~y~~~~~~~~~---~~i~~~~~Thii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~ 103 (359)
++|||+.|..... ..++.++||||+++|+.+++++...... .........+ ..+++++|++||+++|||+.. .
T Consensus 1 vv~y~~~w~~~~~~~~~~~~~~~~thvi~~f~~v~~~~~~~~~~~~~~~~~~~~i-~~l~~~~~g~kv~~sigg~~~--~ 77 (210)
T cd00598 1 VICYYDGWSSGRGPDPTDIPLSLCTHIIYAFAEISSDGSLNLFGDKSEEPLKGAL-EELASKKPGLKVLISIGGWTD--S 77 (210)
T ss_pred CEEEEccccccCCCChhhCCcccCCEEEEeeEEECCCCCEecccCcccHHHHHHH-HHHHHhCCCCEEEEEEcCCCC--C
Confidence 4899999665544 7889999999999999999988554322 2223333334 467777799999999999885 4
Q ss_pred cccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCCc--chhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEe
Q 036029 104 STYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSW--DNYNIGILFKEWRAAVALEARNNSSQSQLILTARV 181 (359)
Q Consensus 104 ~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~~--~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~ 181 (359)
..+ .++.+++.|++|++++++++++|+|||||||||++.... ++++|+.||++||+++++++ ++||+++
T Consensus 78 ~~~-~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~~--------~~ls~a~ 148 (210)
T cd00598 78 SPF-TLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAAN--------YLLTIAV 148 (210)
T ss_pred CCc-hhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcccC--------cEEEEEe
Confidence 444 889999999999999999999999999999999998633 58999999999999998754 6999999
Q ss_pred ecCCCccccccCHhHHhccccEEEeecccccCCCCCCCCCCCCcccccHHHHHHHHHHCCCCCCceeeecccceeeeeec
Q 036029 182 AYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAWTLV 261 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~~~~g~~~~Kl~lGlp~yG~~~~~~ 261 (359)
|+.+......|++.++.+++|++++|+|| |++|+|+|
T Consensus 149 ~~~~~~~~~~~~~~~l~~~vD~v~vm~Yd------------------------------------l~~g~~~~------- 185 (210)
T cd00598 149 PASYFDLGYAYDVPAIGDYVDFVNVMTYD------------------------------------LVLGVPFY------- 185 (210)
T ss_pred cCChHHhhccCCHHHHHhhCCEEEEeeec------------------------------------ccccchhh-------
Confidence 97765444348899999999999999997 88888885
Q ss_pred CCCCCCCCcccCCCCCCCCccccHHHHHHhhhhCCCCccEEEeCCeeeeEEEeCCEEEEEcCHHHHHHHHHHHHHCCCcE
Q 036029 262 KPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCSIGKIWFGFDDVEAVRMKVAYAKEKKLRG 341 (359)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~ydd~~S~~~K~~~~~~~gl~G 341 (359)
|++.|+++++++++||
T Consensus 186 ----------------------------------------------------------------s~~~k~~~~~~~~~gG 201 (210)
T cd00598 186 ----------------------------------------------------------------SLGAKAKYAKQKGLGG 201 (210)
T ss_pred ----------------------------------------------------------------hHHHHHHHHHHcCCce
Confidence 7899999999999999
Q ss_pred EEEEEccCC
Q 036029 342 YFVWKVAYD 350 (359)
Q Consensus 342 v~iW~l~~D 350 (359)
+++|++++|
T Consensus 202 v~~w~~~~d 210 (210)
T cd00598 202 VMIWELDQD 210 (210)
T ss_pred EEEEeccCC
Confidence 999999987
No 16
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=100.00 E-value=2.8e-33 Score=251.71 Aligned_cols=198 Identities=15% Similarity=0.262 Sum_probs=144.5
Q ss_pred EEEEEecCCCC--------cCCCCCCCCCCcEEEEEeEEEeCCCcEEecCcc--chHHHHHHHHHHHh-cCCCceEEEEE
Q 036029 27 IRAGYWDSGDE--------FFISDVNSALFTHLMCGFADVNSTSYELSLSPS--DEKQFSNFTDTVKK-KNPSITTLLSI 95 (359)
Q Consensus 27 ~~~~y~~~~~~--------~~~~~i~~~~~Thii~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lk~-~~~~~kvllsi 95 (359)
++||||+.++. +++..++..+||||+|+|+.++++| ++.+.+. +...+..+...++. +++++||++||
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G-~l~~~d~~~~~~~~~~~~~~i~~~~~~g~KVllSi 79 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDG-NIHLNDHPPDHPRFTTLWTELAILQSSGVKVMGML 79 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCC-eEEECCCCCCcchhhHHHHHHHHHHhCCCEEEEEE
Confidence 57999998421 2223456789999999999999866 6665543 22222222222221 35799999999
Q ss_pred cCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHhhcCCCCceE
Q 036029 96 GGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQL 175 (359)
Q Consensus 96 gg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ 175 (359)
|||.. ..|+.++.+++.|++|++++++++++|+|||||||||+|.. ..+|..|+++||++++.. +
T Consensus 80 GG~~~---~~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~---~~~~~~ll~~Lr~~~~~~---------~ 144 (256)
T cd06546 80 GGAAP---GSFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPMS---LDGIIRLIDRLRSDFGPD---------F 144 (256)
T ss_pred CCCCC---CCcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCCC---HhHHHHHHHHHHHHhCCC---------c
Confidence 99974 34888888999999999999999999999999999999853 579999999999998532 7
Q ss_pred EEEEEeecCCC----ccccccCHhHHh----ccccEEEeecccccCCCCCCCCCCCCcccccHHHHHHHHHHCCCCCCce
Q 036029 176 ILTARVAYSPY----STIGAYSIDSIR----QYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKL 247 (359)
Q Consensus 176 ~ls~~~~~~~~----~~~~~~~~~~l~----~~vD~i~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~~~~g~~~~Kl 247 (359)
.||+++++..- .....+++.++. .++|++|+|.||.++... + ......|++.++|++||
T Consensus 145 ~lT~Ap~~~~~~~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~g~~~------------~-~~~~~~~~~~~~~~~Kv 211 (256)
T cd06546 145 IITLAPVASALTGGEANLSGFDYRELEQARGDKIDFYNAQFYNGFGSMS------------S-PSDYDAIVAQGWDPERI 211 (256)
T ss_pred EEEECCccccccCCcccccccCHHHHHHhhCCceeEEEEcCcCCCCCcc------------C-HHHHHHHHHcCCCcccE
Confidence 89998764321 122235666665 599999999999765410 1 12234566678999999
Q ss_pred eeeccc
Q 036029 248 VLGLPC 253 (359)
Q Consensus 248 ~lGlp~ 253 (359)
++|+|.
T Consensus 212 ~iGlpa 217 (256)
T cd06546 212 VIGLLT 217 (256)
T ss_pred EEEEec
Confidence 999986
No 17
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=100.00 E-value=5.9e-34 Score=260.52 Aligned_cols=244 Identities=19% Similarity=0.300 Sum_probs=197.3
Q ss_pred CceEEEEEcCCC--C--CCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHH
Q 036029 88 SITTLLSIGGGK--N--PNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVA 163 (359)
Q Consensus 88 ~~kvllsigg~~--~--~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~ 163 (359)
+++.++.+...+ . -+.+..+.++.|+..++++++++++.++++|+.|+.||+|.... .|++.|..|++++|.+|+
T Consensus 160 ~i~~~~~iSN~~~~~~~f~~ela~~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE~v~~-~DR~~yt~flR~~r~~l~ 238 (423)
T COG3858 160 KIKPVPGISNGTRPGANFGGELAQLLLNNETAKNRLINNIITLLDARGYRGVNIDFENVGP-GDRELYTDFLRQVRDALH 238 (423)
T ss_pred ccceeEEEecCCccccccchHHHHHHHhcHHHHHHHHHHHHHHHHhcCcccEEechhhCCH-HHHHHHHHHHHHHHHHhc
Confidence 466666664322 1 02344689999999999999999999999999999999998874 999999999999999999
Q ss_pred HHhhcCCCCceEEEEEEeecCCCc-----cccccCHhHHhccccEEEeecccccCCCCCCCCCCCCcccccHHHHHHHHH
Q 036029 164 LEARNNSSQSQLILTARVAYSPYS-----TIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAWT 238 (359)
Q Consensus 164 ~~~~~~~~~~~~~ls~~~~~~~~~-----~~~~~~~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~~ 238 (359)
+++ +.+++++++.+.. +...||+..+.+.+|+|.+|+||-|..| +.+++.||.- .++..++..+
T Consensus 239 ~~G--------~~~siAvaakt~~~~~G~W~~~~dy~a~Gkiad~v~lMtYd~h~~g--G~PG~vA~i~-~vr~~ieya~ 307 (423)
T COG3858 239 SGG--------YTVSIAVAAKTSDLQVGSWHGAYDYVALGKIADFVILMTYDWHYSG--GPPGPVASIG-WVRKVIEYAL 307 (423)
T ss_pred cCC--------eEEEEEecCCCCCCcCccccchhhhhhhceeeeEEEEEEeccCcCC--CCCCcccCch-hHhhhhhhhh
Confidence 886 7999999976532 3334899999999999999999999875 6778899886 7777777766
Q ss_pred HCCCCCCceeeecccceeeeeecCCCCCCCCcccCCCCCCCCccccHHHHHHhhhhCCCCccEEEeCCeeeeEEE----e
Q 036029 239 DEGLSADKLVLGLPCYGYAWTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCS----I 314 (359)
Q Consensus 239 ~~g~~~~Kl~lGlp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~----~ 314 (359)
.. +|++||+||+|+||++|.+..... |..+ ..+++++-..+....+ .++.||..+++||++ +
T Consensus 308 T~-iP~~Kv~mGip~YGYDW~~~y~~~---g~~~--------~a~~~~~~i~ia~~y~--A~Iq~D~~~qsp~F~y~D~e 373 (423)
T COG3858 308 TV-IPAEKVMMGIPLYGYDWTLPYDPL---GYLA--------RAISPDEAIDIANRYN--ATIQYDATSQSPFFYYVDKE 373 (423)
T ss_pred ee-cchHHeEEccccccccccCCCCCC---ccee--------eecCcchhhhhhcccC--CccCcCccccCceEEEEcCC
Confidence 64 999999999999999998644321 1000 1144455444445566 788999999999997 3
Q ss_pred C-CEEEEEcCHHHHHHHHHHHHHCCCcEEEEEEccCCC--chhhhh
Q 036029 315 G-KIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYDH--DWMLSQ 357 (359)
Q Consensus 315 ~-~~~i~ydd~~S~~~K~~~~~~~gl~Gv~iW~l~~Dd--~~~l~~ 357 (359)
+ .+++||||.+|+..|.+++|++||.||++|.|+++| +|+.|+
T Consensus 374 g~~h~VWfeD~~s~~~k~~lik~ygl~GVs~W~Lg~e~p~~w~~l~ 419 (423)
T COG3858 374 GRYHEVWFEDARSFQTKLDLIKEYGLRGVSYWVLGQEDPRNWTYLP 419 (423)
T ss_pred CceEEEEcCchHHHHHHHHHHHHcCCceEEEEEecCcchhHHhhcc
Confidence 4 689999999999999999999999999999999998 566654
No 18
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=100.00 E-value=8.1e-33 Score=247.16 Aligned_cols=203 Identities=12% Similarity=0.110 Sum_probs=143.1
Q ss_pred CCcCCCCCCCCC--CcEEEEEeEE-EeC----CCcEEecCcc-chHHHHHHHHHHHhcCCCceEEEEEcCCCCCCCcccc
Q 036029 36 DEFFISDVNSAL--FTHLMCGFAD-VNS----TSYELSLSPS-DEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYS 107 (359)
Q Consensus 36 ~~~~~~~i~~~~--~Thii~~~~~-~~~----~~~~~~~~~~-~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~ 107 (359)
....+++||.+. ||||+|+|+. .+. .++.....+. +...+..+. .+|+++|++|||+|||||+...+..+.
T Consensus 11 ~~~~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lK~~~p~lKvllSiGG~~~~~~~~~~ 89 (253)
T cd06544 11 NGVTFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFNPYWDTENLTPEAVK-SIKAQHPNVKVVISIGGRGVQNNPTPF 89 (253)
T ss_pred CCccccccCCCCCeeEEEEEEeeeecccccCCCCCccccccCccccCHHHHH-HHHHhCCCcEEEEEeCCCCCCCCcccc
Confidence 345789999888 9999999993 322 1333333322 223445554 799999999999999999861112222
Q ss_pred cccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeecCCCc
Q 036029 108 SMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYS 187 (359)
Q Consensus 108 ~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~~~ 187 (359)
...+....|++|+++++++|++|||||||||||+|. .++.+|+.||++||.+|+.++ .|++++.++...
T Consensus 90 ~~~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~--~d~~~f~~ll~~l~~~l~~~~---------~lt~a~vap~~~ 158 (253)
T cd06544 90 DPSNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFP--ADPDTFVECIGQLITELKNNG---------VIKVASIAPSED 158 (253)
T ss_pred CchhhhhHHHHHHHHHHHHHHHhCCCceeeecccCC--cCHHHHHHHHHHHHHHhhhcC---------CeEEEEecCCcc
Confidence 333334456677999999999999999999999984 679999999999999998764 344443222212
Q ss_pred cccccCHhHHhccccEEEeecccccCCCCCCCCCCCCcccccHHHHHHHHHHCCCCCCceeeecccceeee
Q 036029 188 TIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYGYAW 258 (359)
Q Consensus 188 ~~~~~~~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~~~~g~~~~Kl~lGlp~yG~~~ 258 (359)
....+.++.+.+++|+|++|+|++++.+.+ . ++ .......+.|. .++|++||++|+|.+++.|
T Consensus 159 ~~~~~y~~~~~~~~d~id~~~~qfy~~~~~---~--~~--~~~~~~~~~~~-~~~p~~Kv~lGl~a~~~~~ 221 (253)
T cd06544 159 AEQSHYLALYNAYGDYIDYVNYQFYNYGVP---T--TV--AKYVEFYDEVA-NNYPGKKVLASFSTDGEDG 221 (253)
T ss_pred ccccccHHHHHHhhCceeEEEhhhhCCCCC---C--CH--HHHHHHHHHHH-hCCCcccEEEEEecCCCcc
Confidence 203445788899999999999999886421 1 11 12334455564 4599999999999998766
No 19
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=99.98 E-value=7.4e-31 Score=243.50 Aligned_cols=209 Identities=24% Similarity=0.346 Sum_probs=146.4
Q ss_pred cEEEEEecCCCCcC------CCCCCCCCCcEEEEEeEEEeCCCc-EEe------cCccchHHHHHHHHHHHhcCCCceEE
Q 036029 26 LIRAGYWDSGDEFF------ISDVNSALFTHLMCGFADVNSTSY-ELS------LSPSDEKQFSNFTDTVKKKNPSITTL 92 (359)
Q Consensus 26 ~~~~~y~~~~~~~~------~~~i~~~~~Thii~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~lk~~~~~~kvl 92 (359)
++++|||+.|.... ++.+ .+.||||+++|+.+.+++. .+. ........+.+.++.+|++ ++|||
T Consensus 1 k~~vgY~~~w~~~~~~~~~~~~~~-~~~yt~i~~AF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~q~~--G~KVl 77 (312)
T cd02871 1 KVLVGYWHNWDNGAGSGRQDLDDV-PSKYNVINVAFAEPTSDGGGEVTFNNGSSPGGYSPAEFKADIKALQAK--GKKVL 77 (312)
T ss_pred CeEEEecCcccCCCCCCCCCcccC-CCCCCEEEEcceeecCCCceeEeecccCCcccCChHHHHHHHHHHHHC--CCEEE
Confidence 57899999864432 3333 4889999999999987652 222 1122334555555567665 79999
Q ss_pred EEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCC----cchhhHHHHHHHHHHHHHHHhhc
Q 036029 93 LSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTS----WDNYNIGILFKEWRAAVALEARN 168 (359)
Q Consensus 93 lsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~----~~~~~~~~ll~~l~~~l~~~~~~ 168 (359)
+||||+.. +. .+.+++.|++|++++++++++|+|||||||||++... +++++|+.||++||++++..
T Consensus 78 lSiGG~~~--~~----~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~~~--- 148 (312)
T cd02871 78 ISIGGANG--HV----DLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDHYGPN--- 148 (312)
T ss_pred EEEeCCCC--cc----ccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcCCC---
Confidence 99999874 22 3678899999999999999999999999999998643 37799999999999998642
Q ss_pred CCCCceEEEEEEeecCCCcc---------cccc--CHhHHhccccEEEeecccccCCCCCCCCCCCCcccccHHHHHHHH
Q 036029 169 NSSQSQLILTARVAYSPYST---------IGAY--SIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAW 237 (359)
Q Consensus 169 ~~~~~~~~ls~~~~~~~~~~---------~~~~--~~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~ 237 (359)
++||+++.++ ... ...| .+..+.+++|+|+||.||.++.+. .......+-..+...++..+
T Consensus 149 ------~~lT~AP~~~-~~~~~~~~~~~~~~~y~~~~~~~~~~~D~invqfYn~~~~~~-~~~~~~~~~~~~~~~~~~~~ 220 (312)
T cd02871 149 ------FILTMAPETP-YVQGGYAAYGGIWGAYLPLIDNLRDDLTWLNVQYYNSGGMGG-CDGQSYSQGTADFLVALADM 220 (312)
T ss_pred ------eEEEECCCcc-cccCcccccccCCcchhHHHHHhhhheeEEEEeeccCCCccc-ccccCCccchhHHHHHHHHH
Confidence 8999996543 221 1123 367788899999999999876431 11111111112333333334
Q ss_pred HHCC-----------CCCCceeeecccc
Q 036029 238 TDEG-----------LSADKLVLGLPCY 254 (359)
Q Consensus 238 ~~~g-----------~~~~Kl~lGlp~y 254 (359)
+..| +|++||++|+|..
T Consensus 221 ~~~~~~~~~~~~~~~~p~~Kv~iG~pa~ 248 (312)
T cd02871 221 LLTGFPIAGNDRFPPLPADKVVIGLPAS 248 (312)
T ss_pred HHcCCCccCCcccccCChhhEEEeccCC
Confidence 4444 8999999999974
No 20
>KOG2091 consensus Predicted member of glycosyl hydrolase family 18 [Carbohydrate transport and metabolism]
Probab=99.94 E-value=7.8e-26 Score=198.23 Aligned_cols=290 Identities=13% Similarity=0.127 Sum_probs=221.8
Q ss_pred cEEEEEecCC--CCcCCCCCCCCCCcEEEEEeEEEeCCCcEEecCccchHHHHHHHHHHHhcCCCceEEEEE--cCCCCC
Q 036029 26 LIRAGYWDSG--DEFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSI--GGGKNP 101 (359)
Q Consensus 26 ~~~~~y~~~~--~~~~~~~i~~~~~Thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsi--gg~~~~ 101 (359)
..+.+|.++| .+|....+-.+++|||..-|+.+...|..+.....++-.- .+++.+|++++.++++.-+ ..+.
T Consensus 79 ~~vLayVTPWNs~Gydvakifaskft~iSPVW~ql~~qgs~~~v~G~hdid~-gwiralRk~~~~l~ivPR~~fd~~~-- 155 (392)
T KOG2091|consen 79 GTVLAYVTPWNSHGYDVAKIFASKFTYISPVWLQLKDQGSDVGVYGKHDIDP-GWIRALRKSGKDLHIVPRFYFDEFT-- 155 (392)
T ss_pred CceEEEecCcCccchhHHHHHhcccceecchheeehhcCcceEEeecccCCh-HHHHHHHHhCCCceeeceehhhhcc--
Confidence 3479999995 5888899988999999999999998774444433322222 3445788988899987443 3443
Q ss_pred CCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeee--cCCCcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEE
Q 036029 102 NYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSW--ANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTA 179 (359)
Q Consensus 102 ~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~--~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~ 179 (359)
+..+..++.+++.|++..+.++++++++||||+.|+--. ..--.+ .....|++.|-++++.+. +++-.
T Consensus 156 -~~d~ke~l~ke~l~ekv~~tlv~~ck~~~fdGlVlevwsq~a~~i~d-~~al~~v~hl~k~Lhkq~--------l~~iL 225 (392)
T KOG2091|consen 156 -SADLKEFLVKEALREKVGQTLVNFCKKHGFDGLVLEVWSQLADVIAD-KDALELVEHLGKALHKQE--------LQAIL 225 (392)
T ss_pred -chHHHHHhhhHHHHHHHHHHHHHHHHHcCCCeeeHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhh--------eEEEE
Confidence 567889999999999999999999999999999998531 111122 345578888888998765 45555
Q ss_pred EeecCCC--ccccc----cCHhHHhccccEEEeecccccCCCCCCCCCCCCcccccHHHHHHHHHHCCCCCCceeeeccc
Q 036029 180 RVAYSPY--STIGA----YSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPC 253 (359)
Q Consensus 180 ~~~~~~~--~~~~~----~~~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~~~~g~~~~Kl~lGlp~ 253 (359)
++|+... ..+.. -++..|.+.+|.+.+||||+.+. ..+++++|+. .++.++....-..--+.||++|+.|
T Consensus 226 vvPp~~~~e~~~~~~ft~ee~~~L~~~~d~fsLmTYd~s~~---~~pg~nap~~-wi~~~l~~l~~~s~~r~KiLlGlNF 301 (392)
T KOG2091|consen 226 VVPPVIEEENGQLKFFTPEEFSKLVAVYDGFSLMTYDYSLV---QGPGPNAPLE-WIRHCLHHLGGSSAKRPKILLGLNF 301 (392)
T ss_pred EeCCCCcCCCCCcCcCCHHHHHHHHHhhhheeEEEeecccc---cCCCCCCCHH-HHHHHHHHhCCccccccceeEeeec
Confidence 5665322 11111 25788999999999999999874 4689999998 8999988753222335799999999
Q ss_pred ceeeeeecCCCCCCCCcccCCCCCCCCccccHHHHHHhhhhCCCCccEEEeCCeeeeEEE-----eCCEEEEEcCHHHHH
Q 036029 254 YGYAWTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYNSTYVMNYCS-----IGKIWFGFDDVEAVR 328 (359)
Q Consensus 254 yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~-----~~~~~i~ydd~~S~~ 328 (359)
||++|...++ .+.++-.+-.++++... ....||+++...++- ++++.|.|++..|+.
T Consensus 302 YG~d~~~gdg----------------~~~IT~~rYL~lLk~~k--~~~~~Dees~EH~f~~k~n~~gkhivfyPTL~Sl~ 363 (392)
T KOG2091|consen 302 YGNDFNLGDG----------------GEAITAKRYLQLLKGEK--SVFKFDEESKEHFFEYKRNDDGKHIVFYPTLTSLE 363 (392)
T ss_pred cccccccCCC----------------CCceeHHHHHHHHhccC--cceeeccccchhheeeeccCCCceEEEecchHhHH
Confidence 9999975221 26777788888888777 789999999888874 358899999999999
Q ss_pred HHHHHHHHCCCcEEEEEEccCCC
Q 036029 329 MKVAYAKEKKLRGYFVWKVAYDH 351 (359)
Q Consensus 329 ~K~~~~~~~gl~Gv~iW~l~~Dd 351 (359)
.+++++++.|. ||+||++++--
T Consensus 364 ~Ri~lA~~~gv-gISIWe~GqGL 385 (392)
T KOG2091|consen 364 LRIELARELGV-GISIWEYGQGL 385 (392)
T ss_pred HHHHHHHHhCC-ceEeeeccCch
Confidence 99999999998 99999999864
No 21
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.93 E-value=7.3e-25 Score=198.38 Aligned_cols=195 Identities=16% Similarity=0.139 Sum_probs=138.1
Q ss_pred cEEEEEecCCCC------cCCCCCCCCCCcEEEEEeEEEeCCCcEEecCccchHHHHHHHHHHHhcCCCceEEEEEcCCC
Q 036029 26 LIRAGYWDSGDE------FFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIGGGK 99 (359)
Q Consensus 26 ~~~~~y~~~~~~------~~~~~i~~~~~Thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~ 99 (359)
++.+|||..|.. ..+.++| +.+++|++....++.++... ...........+..+|++ ++||+++|||+.
T Consensus 1 ~~~~~y~~~~~~~~~~~~~~l~~~p-ds~D~v~lf~~~~~~~~~~~--~~~~~~~~~~~i~~l~~k--G~KVl~sigg~~ 75 (255)
T cd06542 1 PISFGYFEVWDDKGASLQESLLNLP-DSVDMVSLFAANINLDAATA--VQFLLTNKETYIRPLQAK--GTKVLLSILGNH 75 (255)
T ss_pred CeEEEEEEecCCcCcccccccccCC-CcceEEEEcccccCcccccc--hhhhhHHHHHHHHHHhhC--CCEEEEEECCCC
Confidence 357899988764 3455555 57888888555444332110 001122333444455554 899999999988
Q ss_pred CCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCC------CcchhhHHHHHHHHHHHHHHHhhcCCCCc
Q 036029 100 NPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANT------SWDNYNIGILFKEWRAAVALEARNNSSQS 173 (359)
Q Consensus 100 ~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~------~~~~~~~~~ll~~l~~~l~~~~~~~~~~~ 173 (359)
. ...| ....+++.|++|++++++++++|||||||||||++.. +.++++|..|+++||+.+++.+
T Consensus 76 ~--~~~~-~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~~~~~------- 145 (255)
T cd06542 76 L--GAGF-ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYMGPTD------- 145 (255)
T ss_pred C--CCCc-cccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHhCcCC-------
Confidence 5 4444 3456788999999999999999999999999999864 2478899999999999997633
Q ss_pred eEEEEEEeecCCCccccccCHhHHhccccEEEeecccccCCCCCCCCCCCCcccccHHHHHHHHHHCCCCCCceeeeccc
Q 036029 174 QLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPC 253 (359)
Q Consensus 174 ~~~ls~~~~~~~~~~~~~~~~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~~~~g~~~~Kl~lGlp~ 253 (359)
++|++++++..... +.+++.+++||+++|+|+.++.- ... + ......|+|++|+++|+++
T Consensus 146 -kllt~~~~~~~~~~----~~~~~~~~vDyv~~~~y~~~~~~----~~~----~-------~~~~~~g~~~~k~i~~~~~ 205 (255)
T cd06542 146 -KLLTIDGYGQALSN----DGEEVSPYVDYVIYQYYGSSSSS----TQR----N-------WNTNSPKIPPEKMVYTESF 205 (255)
T ss_pred -cEEEEEecCCchhc----CHHHHHHhCCEEEeeccCCCCcc----CCc----c-------cccccCCCCHHHceeeeee
Confidence 58999887543221 67899999999999999854331 000 0 1112468999999999998
Q ss_pred ce
Q 036029 254 YG 255 (359)
Q Consensus 254 yG 255 (359)
++
T Consensus 206 ~~ 207 (255)
T cd06542 206 EE 207 (255)
T ss_pred ec
Confidence 75
No 22
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=99.91 E-value=3.6e-23 Score=187.60 Aligned_cols=201 Identities=20% Similarity=0.205 Sum_probs=134.7
Q ss_pred EEEEEecCCC--CcCCCCCCCCCCcEEEEEeEEEeCCCcE--EecCccc-------hHHHHHHHHHHHhcCCCceEEEEE
Q 036029 27 IRAGYWDSGD--EFFISDVNSALFTHLMCGFADVNSTSYE--LSLSPSD-------EKQFSNFTDTVKKKNPSITTLLSI 95 (359)
Q Consensus 27 ~~~~y~~~~~--~~~~~~i~~~~~Thii~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~lk~~~~~~kvllsi 95 (359)
.++.||-... .-..+.++...++.|+++|+..-+.++. +.+...- -+.+...++.+++ +++||||||
T Consensus 2 ~v~vyWGq~~~~~~L~~~C~~~~~dii~i~Fl~~~~~~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~--~G~KVlLSI 79 (280)
T cd02877 2 NIAVYWGQNSDEGSLREYCDTGNYDIVNISFLNVFGSGGTPGLNFAGHCGGSTYPNCPQLGADIKHCQS--KGKKVLLSI 79 (280)
T ss_pred CeEEECCCCCCCCCHHHHhCCCCccEEEEEeEcccCCCCCcccCccccCcccccccchhHHHHHHHHHH--CCCEEEEEc
Confidence 4678996522 2222233456799999999998765332 2222221 1244444444555 489999999
Q ss_pred cCCCCCCCcccccccCChhhHHHHHHHHHHHH------------HHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHH
Q 036029 96 GGGKNPNYSTYSSMASNPSSRKSFIDSSIKIA------------RLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVA 163 (359)
Q Consensus 96 gg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l------------~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~ 163 (359)
||+.. +..+ .+++.|++|++++.++. .+++|||||||||++.. .+|..|+++||+.++
T Consensus 80 GG~~~--~~~~----~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~----~~~~~l~~~LR~~~~ 149 (280)
T cd02877 80 GGAGG--SYSL----SSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSP----ENYDALAKRLRSLFA 149 (280)
T ss_pred cCCCC--CcCC----CCHHHHHHHHHHHHHHhCCccccccccccccccccceEEecccCCc----cCHHHHHHHHHHHhh
Confidence 99985 4333 67899999999998775 25779999999999874 689999999999997
Q ss_pred HHhhcCCCCceEEEEEEeecCCCccccccCHhHHh-ccccEEEeecccccCCCCCCCCCCCCcccccHHHHHHHHHHCCC
Q 036029 164 LEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIR-QYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAWTDEGL 242 (359)
Q Consensus 164 ~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~-~~vD~i~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~~~~g~ 242 (359)
... + .++.||+++++. ....+....+. .++|+|+||.||..+- ....+.. .......+.|.+. +
T Consensus 150 ~~~----~-~~~~LTaAPq~~---~~d~~~~~~i~~~~~D~i~vqfYn~~~c--~~~~~~~----~~~~~~~~~w~~~-~ 214 (280)
T cd02877 150 SDP----S-KKYYLTAAPQCP---YPDASLGDAIATGLFDFIFVQFYNNPCC--SYASGNA----SGFNFNWDTWTSW-A 214 (280)
T ss_pred ccc----C-CceEEEeccccC---CcchhHHHHHccCccCEEEEEEecCccc--ccccccc----chhhhHHHHHHHh-c
Confidence 641 0 148999997763 12224445565 4999999999996532 1011111 1334556777765 5
Q ss_pred CC---Cceeeecccc
Q 036029 243 SA---DKLVLGLPCY 254 (359)
Q Consensus 243 ~~---~Kl~lGlp~y 254 (359)
+. .||++|+|..
T Consensus 215 ~~~~~~kv~lGlpas 229 (280)
T cd02877 215 KATSNAKVFLGLPAS 229 (280)
T ss_pred ccCCCceEEEecccC
Confidence 55 8999999874
No 23
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.86 E-value=6.3e-21 Score=174.17 Aligned_cols=150 Identities=13% Similarity=0.158 Sum_probs=113.4
Q ss_pred CCCCcEEEEEeEEEeCCCcEEecCcc---c-hHHHHHHHHHHHhcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHH
Q 036029 45 SALFTHLMCGFADVNSTSYELSLSPS---D-EKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFI 120 (359)
Q Consensus 45 ~~~~Thii~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~ 120 (359)
-..|+||+++|+....+ +++.+... + ...+...+..+|++ ++||++|+||+.. . . +..+..+|++|+
T Consensus 23 ~~g~~~v~lAFi~~~~~-~~~~w~g~~~~~~~~~~~~~i~~lk~~--G~kViiS~GG~~g--~-~---~~~~~~~~~~~~ 93 (294)
T cd06543 23 ATGVKAFTLAFIVASGG-CKPAWGGSYPLDQGGWIKSDIAALRAA--GGDVIVSFGGASG--T-P---LATSCTSADQLA 93 (294)
T ss_pred HcCCCEEEEEEEEcCCC-CcccCCCCCCcccchhHHHHHHHHHHc--CCeEEEEecCCCC--C-c---cccCcccHHHHH
Confidence 35899999999988743 35554432 1 23334444578877 5899999999985 2 2 333778999999
Q ss_pred HHHHHHHHHcCcceEEEEeeecCCCcch---hhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeecCCCccc-cccCHhH
Q 036029 121 DSSIKIARLYGFQGLDLSWSWANTSWDN---YNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTI-GAYSIDS 196 (359)
Q Consensus 121 ~~i~~~l~~~~~DGidiD~E~~~~~~~~---~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~~~~~-~~~~~~~ 196 (359)
+++.++|.+|+|||||||||++.. .++ +++..+|++|+++++ ++.|++++|..+.... ..+++.+
T Consensus 94 ~a~~~~i~~y~~dgiDfDiE~~~~-~d~~~~~~~~~al~~Lq~~~p----------~l~vs~Tlp~~p~gl~~~g~~~l~ 162 (294)
T cd06543 94 AAYQKVIDAYGLTHLDFDIEGGAL-TDTAAIDRRAQALALLQKEYP----------DLKISFTLPVLPTGLTPDGLNVLE 162 (294)
T ss_pred HHHHHHHHHhCCCeEEEeccCCcc-ccchhHHHHHHHHHHHHHHCC----------CcEEEEecCCCCCCCChhHHHHHH
Confidence 999999999999999999999874 554 778888888887663 2689999887665332 4466777
Q ss_pred Hhc----cccEEEeecccccCC
Q 036029 197 IRQ----YLNWVHVITAEYSRP 214 (359)
Q Consensus 197 l~~----~vD~i~vm~yd~~~~ 214 (359)
.+. .+|+||||+|||++.
T Consensus 163 ~a~~~Gv~~d~VNiMtmDyg~~ 184 (294)
T cd06543 163 AAAANGVDLDTVNIMTMDYGSS 184 (294)
T ss_pred HHHHcCCCcceeeeeeecCCCC
Confidence 777 899999999999864
No 24
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=99.81 E-value=1.1e-18 Score=149.19 Aligned_cols=215 Identities=17% Similarity=0.290 Sum_probs=134.2
Q ss_pred CCCCcEEEEEecCCCC--------cCCCCCCC----CCCcEEEEEeEEEeCCCcEEecCccchHHHHHHHHHHHhcCCCc
Q 036029 22 RAQTLIRAGYWDSGDE--------FFISDVNS----ALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSI 89 (359)
Q Consensus 22 ~~~~~~~~~y~~~~~~--------~~~~~i~~----~~~Thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~ 89 (359)
.+..++.+|||+.|.. -...+|.. ..+..+..+|+.-..+--+..+....+..|+.-+..|.++ +-
T Consensus 22 ~~~~KvLvGyWHnw~sgaaDgyq~gs~adial~d~~~~ynvv~V~Fmk~~g~iptf~P~~~~daeFr~~v~aLnae--Gk 99 (332)
T COG3469 22 DISNKVLVGYWHNWKSGAADGYQQGSSADIALADTPRNYNVVTVSFMKGAGDIPTFKPYNDPDAEFRAQVGALNAE--GK 99 (332)
T ss_pred ccccceEEEeeecccccccccccccceeeeEeccCCcccceEEEEEeecCCCCcccCcCCCCHHHHHHHHHHhhcc--Cc
Confidence 3556799999998421 11222222 2366666666553321111111122345666555555555 67
Q ss_pred eEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCC--CcchhhHHHHHHHHHHHHHHHhh
Q 036029 90 TTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANT--SWDNYNIGILFKEWRAAVALEAR 167 (359)
Q Consensus 90 kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~--~~~~~~~~~ll~~l~~~l~~~~~ 167 (359)
-|++|+||... ... .+...-+.|+++|++++++|||||+|||.|.... .+...-..+.+|.+|+..+..++
T Consensus 100 avllsLGGAdg----hIe---L~~~qE~~fv~eiirlietyGFDGLDiDLEq~ai~~~dnq~v~p~alk~vk~hyk~~Gk 172 (332)
T COG3469 100 AVLLSLGGADG----HIE---LKAGQEQAFVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKDHYKNQGK 172 (332)
T ss_pred EEEEEccCccc----eEE---eccchHHHHHHHHHHHHHHhCCCccccchhhhhhhhcCCeeehHHHHHHHHHHHHhcCC
Confidence 88999999764 222 2333468999999999999999999999997652 13444778999999999998877
Q ss_pred cCCCCceEEEEEEeecCCCccccc-c--CHhHHhccccEEEeecccccCCCCCCCCCCCCccc---ccHHHHHHHHH---
Q 036029 168 NNSSQSQLILTARVAYSPYSTIGA-Y--SIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALV---FNTEYGITAWT--- 238 (359)
Q Consensus 168 ~~~~~~~~~ls~~~~~~~~~~~~~-~--~~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl~---~~~~~~~~~~~--- 238 (359)
++.||+++.. |+....+ | -+.++..+.|+|+++-|+-.|.. ...+..+++.. ..+.+..-+++
T Consensus 173 ------~f~itMAPEf-PYl~~~gaY~pyin~l~~~yD~i~pQlYNqGGdg-~w~~~~nawi~q~nd~~kesfly~~~~s 244 (332)
T COG3469 173 ------NFFITMAPEF-PYLQGWGAYIPYINELRDYYDFIAPQLYNQGGDG-NWVTESNAWIAQNNDMVKESFLYYLTFS 244 (332)
T ss_pred ------ceEEEecCCC-ceecCCcccchHHHHHhhHHhhhhHHHhcCCCCC-CCcCccccccccccHHHHHhHHHHhhhh
Confidence 6999998663 3333222 3 36889999999999999987651 11122223322 11111111111
Q ss_pred -H------CCCCCCceeeeccc
Q 036029 239 -D------EGLSADKLVLGLPC 253 (359)
Q Consensus 239 -~------~g~~~~Kl~lGlp~ 253 (359)
. ..+|.+|+++|||.
T Consensus 245 lanGtr~f~~ipa~k~aiGLPs 266 (332)
T COG3469 245 LANGTRGFEKIPADKFAIGLPS 266 (332)
T ss_pred hhcCcccceecccceeEEecCC
Confidence 1 13789999999987
No 25
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=99.53 E-value=9.6e-13 Score=118.99 Aligned_cols=205 Identities=19% Similarity=0.197 Sum_probs=127.8
Q ss_pred cCCCCCcEEEEEecCC----CCcCCCCCCCCCCcEEEEEeEEEeCCCcEEecC--cc----c------hHHHHHHHHHHH
Q 036029 20 PTRAQTLIRAGYWDSG----DEFFISDVNSALFTHLMCGFADVNSTSYELSLS--PS----D------EKQFSNFTDTVK 83 (359)
Q Consensus 20 ~~~~~~~~~~~y~~~~----~~~~~~~i~~~~~Thii~~~~~~~~~~~~~~~~--~~----~------~~~~~~~~~~lk 83 (359)
..-+.+..+++||..+ ..-....+....+..|+++|+.--+.++.+.+. +. + =-++..-++.++
T Consensus 21 ~~~~~~t~IA~YWGQN~aG~q~~Ls~yC~~~~yd~~~lsFL~~F~~~~Tp~LNfAn~Csd~~~~~l~~CTqi~~di~~CQ 100 (568)
T KOG4701|consen 21 LNLTNQTAIAGYWGQNLAGDQKRLSSYCQNTTYDAIILSFLIDFNVDGTPVLNFANLCSDSDTFSLKKCTQIETDIQVCQ 100 (568)
T ss_pred cccccccceEEEeccccccchhhhhhhhccCccceeeeehhhhcCCCCCceeehhcccCccccccccccchhhhHHHHHH
Confidence 3445667789999763 111233345567888999988655544443221 11 1 122344444555
Q ss_pred hcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHH----------cCcceEEEEeeecCCCcchhhHHH
Q 036029 84 KKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARL----------YGFQGLDLSWSWANTSWDNYNIGI 153 (359)
Q Consensus 84 ~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~----------~~~DGidiD~E~~~~~~~~~~~~~ 153 (359)
.+ |+||||++||..+ + -.+.+.+..+.|++.+-+..-+ .-+||+|+|+|... ...|-+
T Consensus 101 S~--GiKVlLSLGG~~G--n----Ys~~~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfDF~IE~g~----~~~ysa 168 (568)
T KOG4701|consen 101 SN--GIKVLLSLGGYNG--N----YSLNNDDDATNFAFQLWNIFGSGEDSYRPFGKAVVDGFDFEIEKGT----NTAYSA 168 (568)
T ss_pred hc--CeEEEEeccCccc--c----eeeccchhHHHHHHHHHHHhcCCccccCcccchhccceeeeeecCC----cchHHH
Confidence 54 8999999999875 2 2345667778888888766533 23799999999543 478899
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEEEEeecCCCccccccCHhHH-hccccEEEeecccccCCCCCCCCCCCCcccccHHH
Q 036029 154 LFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSI-RQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEY 232 (359)
Q Consensus 154 ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l-~~~vD~i~vm~yd~~~~~~~~~~~~~spl~~~~~~ 232 (359)
|-+.||..|...++ ++.|+.++.|+ +++ +.--..| .+-.||+.++.|+-.. ...-+ .+.+.
T Consensus 169 LA~~L~~~Fa~~~r------~yYLsaAPQCP--~PD-~~~G~aL~~~~fDf~~IQFYNN~~------CS~Ss---G~~Q~ 230 (568)
T KOG4701|consen 169 LAKRLLEIFASDPR------RYYLSAAPQCP--VPD-HTLGKALSENSFDFLSIQFYNNST------CSGSS---GSRQS 230 (568)
T ss_pred HHHHHHHHHccCCc------eEEeccCCCCC--CCc-hhhhhhhhccccceEEEEeecCCC------ccccc---Ccccc
Confidence 99999999977654 58999988765 222 2112233 3568999999997421 11111 12233
Q ss_pred HHHHHHH--CCCCCCc---eeeecccc
Q 036029 233 GITAWTD--EGLSADK---LVLGLPCY 254 (359)
Q Consensus 233 ~~~~~~~--~g~~~~K---l~lGlp~y 254 (359)
..+.|++ ..+.++| +.||||..
T Consensus 231 ~fDsW~~ya~~~a~nKn~~lFLGLPg~ 257 (568)
T KOG4701|consen 231 TFDAWVEYAEDSAYNKNTSLFLGLPGH 257 (568)
T ss_pred cHHHHHHHHhhhcccccceEEeeccCC
Confidence 3344442 2366777 99999874
No 26
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=98.52 E-value=3.3e-07 Score=85.71 Aligned_cols=157 Identities=9% Similarity=0.052 Sum_probs=106.1
Q ss_pred HHHHHHhcCCCceEEEEEc-CCCCCCCcccccccCC-hhhHHHHHHHHHHHHHHcCcceEEEEeeecC-CCcchhhHHHH
Q 036029 78 FTDTVKKKNPSITTLLSIG-GGKNPNYSTYSSMASN-PSSRKSFIDSSIKIARLYGFQGLDLSWSWAN-TSWDNYNIGIL 154 (359)
Q Consensus 78 ~~~~lk~~~~~~kvllsig-g~~~~~~~~~~~~~~~-~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~-~~~~~~~~~~l 154 (359)
.++.+|++ ||||+-.|- -+.. ..+....++.+ ++.+..+|+.++++++.|||||+.||+|... ...+++.+..|
T Consensus 51 ~idaAHkn--GV~Vlgti~~e~~~-~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F 127 (339)
T cd06547 51 WINAAHRN--GVPVLGTFIFEWTG-QVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAF 127 (339)
T ss_pred HHHHHHhc--CCeEEEEEEecCCC-chHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHH
Confidence 45556665 899997774 1211 24567788888 9999999999999999999999999999887 56889999999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEEEeec--CCC-ccccc---cCHhHHhccccEEEeecccccCCCCCCCCCCCCcccc
Q 036029 155 FKEWRAAVALEARNNSSQSQLILTARVAY--SPY-STIGA---YSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVF 228 (359)
Q Consensus 155 l~~l~~~l~~~~~~~~~~~~~~ls~~~~~--~~~-~~~~~---~~~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl~~ 228 (359)
+++|+++++++.. +..|..-=.- ... .++.. .+.+.+ +.+|-+.+ .|. |. . .
T Consensus 128 ~~~L~~~~~~~~~------~~~v~WYDs~t~~G~l~wQn~Ln~~N~~ff-~~~D~~Fl-NY~----W~-~---------~ 185 (339)
T cd06547 128 LRYLKAKLHENVP------GSLVIWYDSMTEDGKLSWQNELNSKNKPFF-DVCDGIFL-NYW----WT-E---------E 185 (339)
T ss_pred HHHHHHHHhhcCC------CcEEEEEecCCCCCccchhhhhhHHHHHHH-hhhcceeE-ecC----CC-c---------c
Confidence 9999999997542 1333222111 000 11111 122222 55664432 342 21 1 2
Q ss_pred cHHHHHHHHHHCCCCCCceeeecccceeeee
Q 036029 229 NTEYGITAWTDEGLSADKLVLGLPCYGYAWT 259 (359)
Q Consensus 229 ~~~~~~~~~~~~g~~~~Kl~lGlp~yG~~~~ 259 (359)
.++.+++.....|..+.+|.+|+=..|+...
T Consensus 186 ~l~~s~~~a~~~g~~~~dvy~GiDv~grg~~ 216 (339)
T cd06547 186 SLERSVQLAEGLGRSPYDVYVGVDVWGRGTK 216 (339)
T ss_pred hHHHHHHHHHHcCCCHhHEEEEEEEEcCCcc
Confidence 4556666677788999999999998887753
No 27
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=98.03 E-value=2.4e-05 Score=72.50 Aligned_cols=155 Identities=13% Similarity=0.101 Sum_probs=94.4
Q ss_pred HHHHHHhcCCCceEEEEEc-CCCCCCCcccccccC-ChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCC-cchhhHHHH
Q 036029 78 FTDTVKKKNPSITTLLSIG-GGKNPNYSTYSSMAS-NPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTS-WDNYNIGIL 154 (359)
Q Consensus 78 ~~~~lk~~~~~~kvllsig-g~~~~~~~~~~~~~~-~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~-~~~~~~~~l 154 (359)
.++.+|++ |||||=+|- .|.. ..+....++. ++.....+++.++++++.|||||.-|++|.+... ...+.+..|
T Consensus 47 widaAHrn--GV~vLGTiife~~~-~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw~iN~E~~~~~~~~~~~l~~F 123 (311)
T PF03644_consen 47 WIDAAHRN--GVKVLGTIIFEWGG-GAEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGWLINIETPLSGPEDAENLIDF 123 (311)
T ss_dssp HHHHHHHT--T--EEEEEEEEEE---HHHHHHHT---TTS--HHHHHHHHHHHHHT--EEEEEEEESSTTGGGHHHHHHH
T ss_pred hHHHHHhc--CceEEEEEEecCCc-hHHHHHHHHcCCcccccHHHHHHHHHHHHcCCCceEEEecccCCchhHHHHHHHH
Confidence 45566665 899985552 2221 2456778888 8888899999999999999999999999988764 688999999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEEEeecCC---CccccccCH--hHHhccccEEEeecccccCCCCCCCCCCCCccccc
Q 036029 155 FKEWRAAVALEARNNSSQSQLILTARVAYSP---YSTIGAYSI--DSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFN 229 (359)
Q Consensus 155 l~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~---~~~~~~~~~--~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl~~~ 229 (359)
+++|++..+. .. +..|..--.-.. -.++...+- ....+.+|-|.+ .|. |.. ..
T Consensus 124 ~~~l~~~~~~-~~------~~~v~WYDs~t~~G~l~~qn~Ln~~N~~f~~~~d~iFl-NY~----W~~----------~~ 181 (311)
T PF03644_consen 124 LKYLRKEAHE-NP------GSEVIWYDSVTNSGRLSWQNELNDKNKPFFDVCDGIFL-NYN----WNP----------DS 181 (311)
T ss_dssp HHHHHHHHHH-T-------T-EEEEES-B-SSSSB---SSS-TTTGGGBES-SEEEE--S------SH----------HH
T ss_pred HHHHHHHhhc-CC------CcEEEEeecCCcCCccchHHHHHhhCcchhhhcceeeE-ecC----CCc----------cc
Confidence 9999999998 32 134444322111 111211110 112345565533 232 211 35
Q ss_pred HHHHHHHHHHCCCCCCceeeecccceee
Q 036029 230 TEYGITAWTDEGLSADKLVLGLPCYGYA 257 (359)
Q Consensus 230 ~~~~~~~~~~~g~~~~Kl~lGlp~yG~~ 257 (359)
++.+++...+.+.+|.+|.+|+=..|+.
T Consensus 182 l~~s~~~A~~~~~~~~~vy~GiDv~grg 209 (311)
T PF03644_consen 182 LESSVANAKSRGRDPYDVYAGIDVFGRG 209 (311)
T ss_dssp HHHHHHHHHHHTS-GGGEEEEEEHHHHT
T ss_pred HHHHHHHHHHcCCCHHHEEEEEEEEcCC
Confidence 7788888888899999999999999887
No 28
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.96 E-value=0.0001 Score=68.50 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=85.0
Q ss_pred ChhhHHHHHHHHHHHHHHcCcceEEEE-eeecC-----------------------CCcc-------hhhHHHHHHHHHH
Q 036029 112 NPSSRKSFIDSSIKIARLYGFQGLDLS-WSWAN-----------------------TSWD-------NYNIGILFKEWRA 160 (359)
Q Consensus 112 ~~~~r~~f~~~i~~~l~~~~~DGidiD-~E~~~-----------------------~~~~-------~~~~~~ll~~l~~ 160 (359)
.++.|+-.++-+.+++++|++|||.|| +-+|. .+.| +++...||++++.
T Consensus 135 ~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~ 214 (311)
T PF02638_consen 135 HPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYD 214 (311)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888999999999999 44432 1234 6688899999999
Q ss_pred HHHHHhhcCCCCceEEEEEEeecCCCccccc--cCHhHH--hccccEEEeecccccCCCCCCCCCCCCcccccHHHHHHH
Q 036029 161 AVALEARNNSSQSQLILTARVAYSPYSTIGA--YSIDSI--RQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGITA 236 (359)
Q Consensus 161 ~l~~~~~~~~~~~~~~ls~~~~~~~~~~~~~--~~~~~l--~~~vD~i~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~ 236 (359)
++++.++ ...+++++.+........ -|.... ..++|++..|.|-.. ..... ..++..+..
T Consensus 215 ~ik~~kP------~v~~sisp~g~~~~~y~~~~qD~~~W~~~G~iD~i~Pq~Y~~~------~~~~~----~~~~~~~~~ 278 (311)
T PF02638_consen 215 AIKAIKP------WVKFSISPFGIWNSAYDDYYQDWRNWLKEGYIDYIVPQIYWSD------FSHFT----APYEQLAKW 278 (311)
T ss_pred HHHHhCC------CCeEEEEeecchhhhhhheeccHHHHHhcCCccEEEeeecccc------cchhH----HHHHHHHHH
Confidence 9998764 467777654322111111 133433 368999999999421 11111 255677777
Q ss_pred HHHCCCC-CCceeeecccce
Q 036029 237 WTDEGLS-ADKLVLGLPCYG 255 (359)
Q Consensus 237 ~~~~g~~-~~Kl~lGlp~yG 255 (359)
|.+.-.+ .-+|.+|+.+|-
T Consensus 279 w~~~~~~~~v~ly~G~~~y~ 298 (311)
T PF02638_consen 279 WAKQVKPTNVHLYIGLALYK 298 (311)
T ss_pred HHHhhcCCCceEEEccCcCC
Confidence 7764343 359999998874
No 29
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.73 E-value=0.021 Score=52.84 Aligned_cols=86 Identities=12% Similarity=0.082 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHcCcceEEEEe-eecCC----------Cc----chhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEe
Q 036029 117 KSFIDSSIKIARLYGFQGLDLSW-SWANT----------SW----DNYNIGILFKEWRAAVALEARNNSSQSQLILTARV 181 (359)
Q Consensus 117 ~~f~~~i~~~l~~~~~DGidiD~-E~~~~----------~~----~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~ 181 (359)
.+..-.|+..+.+.|||.|.+|+ .+|.. .. -.+.+..||+..+++++..+ ..||+.+
T Consensus 123 w~Y~i~IA~Eaa~~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~--------v~vSaDV 194 (316)
T PF13200_consen 123 WDYNIDIAKEAAKLGFDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAREELHPYG--------VPVSADV 194 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHhHcC--------CCEEEEe
Confidence 45566788888899999999999 67761 11 23678899999999998875 4899998
Q ss_pred ecCCCcc----ccccCHhHHhccccEEEeeccc
Q 036029 182 AYSPYST----IGAYSIDSIRQYLNWVHVITAE 210 (359)
Q Consensus 182 ~~~~~~~----~~~~~~~~l~~~vD~i~vm~yd 210 (359)
.+..... ..+=++..++++||+|.-|.|-
T Consensus 195 fG~~~~~~~~~~iGQ~~~~~a~~vD~IsPMiYP 227 (316)
T PF13200_consen 195 FGYVAWSPDDMGIGQDFEKIAEYVDYISPMIYP 227 (316)
T ss_pred cccccccCCCCCcCCCHHHHhhhCCEEEecccc
Confidence 8654333 1123789999999999999994
No 30
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=97.61 E-value=0.00064 Score=56.98 Aligned_cols=115 Identities=10% Similarity=0.070 Sum_probs=74.5
Q ss_pred hhhHHHHHHHHHHHHHHc-CcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeecCCCccccc
Q 036029 113 PSSRKSFIDSSIKIARLY-GFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGA 191 (359)
Q Consensus 113 ~~~r~~f~~~i~~~l~~~-~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~~~~~~~ 191 (359)
++..++..+.+.++-..- ..-||.|||..+. .....|..||++||..+..+ +.||++.=+...... .
T Consensus 23 ~~~~~~i~~~l~~W~~~G~~v~giQIDfDa~t--~~L~~Y~~fL~~LR~~LP~~---------~~LSIT~L~dW~~~~-~ 90 (181)
T PF11340_consen 23 EQVLARILQLLQRWQAAGNNVAGIQIDFDAAT--SRLPAYAQFLQQLRQRLPPD---------YRLSITALPDWLSSP-D 90 (181)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEecCccc--cchHHHHHHHHHHHHhCCCC---------ceEeeEEehhhhcCc-h
Confidence 445555555555555443 5799999998764 67889999999999999875 556665432211111 1
Q ss_pred cCHhHHhccccEEEeecccccCCCCCCCCCCCCcccccHHHHHHHHHHCCCCCCceeeecccce
Q 036029 192 YSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCYG 255 (359)
Q Consensus 192 ~~~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~~~~g~~~~Kl~lGlp~yG 255 (359)
.++.+...||.+.+|+|. |. +..+ ....-+..+.. +. --.-+|+|.||
T Consensus 91 -~L~~L~~~VDE~VlQ~yq--Gl-------~d~~---~~~~yl~~l~~--l~-~PFriaLp~yG 138 (181)
T PF11340_consen 91 -WLNALPGVVDELVLQVYQ--GL-------FDPP---NYARYLPRLAR--LT-LPFRIALPQYG 138 (181)
T ss_pred -hhhhHhhcCCeeEEEeec--CC-------CCHH---HHHHHHHHHhc--CC-CCeEEecCcCC
Confidence 367899999999999992 22 1111 23333344433 33 45678999999
No 31
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.02 E-value=2.7 Score=38.26 Aligned_cols=90 Identities=13% Similarity=0.095 Sum_probs=45.4
Q ss_pred chHHHHHHHHHHHhcCCCceEEEEEc---CCCCC----CCcccccccCChhh--HHHHHHHHHHHHHHcCcceEEEEeee
Q 036029 71 DEKQFSNFTDTVKKKNPSITTLLSIG---GGKNP----NYSTYSSMASNPSS--RKSFIDSSIKIARLYGFQGLDLSWSW 141 (359)
Q Consensus 71 ~~~~~~~~~~~lk~~~~~~kvllsig---g~~~~----~~~~~~~~~~~~~~--r~~f~~~i~~~l~~~~~DGidiD~E~ 141 (359)
+-.....+.++ +++.++|||+-+= =|.++ .+..|..+--+... .-.+.+.+++.+++ .||++||-+
T Consensus 102 D~~k~ieiakR--Ak~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~---eGi~pdmVQ 176 (403)
T COG3867 102 DLKKAIEIAKR--AKNLGMKVLLDFHYSDFWADPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKK---EGILPDMVQ 176 (403)
T ss_pred hHHHHHHHHHH--HHhcCcEEEeeccchhhccChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHH---cCCCccceE
Confidence 33444444433 3455999999872 12221 11223322211111 12355667777776 578888865
Q ss_pred cCC-----------C-cchhhHHHHHHHHHHHHHHH
Q 036029 142 ANT-----------S-WDNYNIGILFKEWRAAVALE 165 (359)
Q Consensus 142 ~~~-----------~-~~~~~~~~ll~~l~~~l~~~ 165 (359)
.+. . .+.+.+..|+.+=..+++..
T Consensus 177 VGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev 212 (403)
T COG3867 177 VGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREV 212 (403)
T ss_pred eccccCCceeccCCCCcChHHHHHHHHHHhhhhhhc
Confidence 542 1 13445556666655555543
No 32
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=94.37 E-value=0.38 Score=45.59 Aligned_cols=152 Identities=10% Similarity=0.116 Sum_probs=98.7
Q ss_pred HHHHhcCCCceEEEEE-cCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHH
Q 036029 80 DTVKKKNPSITTLLSI-GGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEW 158 (359)
Q Consensus 80 ~~lk~~~~~~kvllsi-gg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l 158 (359)
+.+|++ |++|+-++ ..|.. ....-..++.++++.+..+.-++++.+-.||||=-|++|...+.....++..|++.|
T Consensus 118 n~AHrH--GV~vlGTFItEw~e-g~~~c~~~La~~es~~~~~e~L~~l~~~fgFdGWLiNiEn~i~~~~i~~l~~F~~~L 194 (526)
T KOG2331|consen 118 NTAHRH--GVKVLGTFITEWDE-GKATCKEFLATEESVEMTVERLVELARFFGFDGWLINIENKIDLAKIPNLIQFVSHL 194 (526)
T ss_pred chhhhc--CceeeeeEEEEecc-chhHHHHHHccchhHHHHHHHHHHHHHHhCCceEEEEeeeccChhhCccHHHHHHHH
Confidence 345555 89998553 45543 345567888999999999999999999999999999999877666778999999999
Q ss_pred HHHHHHHhhcCCCCceEEEEEEee-cCC-Ccccccc--CHhHHhccccEEEeecccccCCCCCCCCCCCCcccccHHHHH
Q 036029 159 RAAVALEARNNSSQSQLILTARVA-YSP-YSTIGAY--SIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGI 234 (359)
Q Consensus 159 ~~~l~~~~~~~~~~~~~~ls~~~~-~~~-~~~~~~~--~~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl~~~~~~~~ 234 (359)
.+.++...+ .+ +.+....- -.. ..++... .-+..-+.+|-+ .|.|+ |.+. ..+...
T Consensus 195 t~~~~~~~p--~~---~ViWYDSV~~~G~L~WQ~eLne~N~~Ffd~cdg~-~~NY~----Wke~----------~l~rsa 254 (526)
T KOG2331|consen 195 TKVLHSSVP--GG---LVIWYDSVTDDGQLHWQNELNEMNRKFFDACDGI-FMNYN----WKEK----------HLERSA 254 (526)
T ss_pred HHHHhhcCC--Cc---eEEEEeeeeecCeeehhhhhhhhcchhhhhccee-eeecc----cccc----------hHHHHH
Confidence 999987632 12 33333211 111 1111111 112334556665 56675 4222 112221
Q ss_pred HHHHHCCCCCCceeeecccceee
Q 036029 235 TAWTDEGLSADKLVLGLPCYGYA 257 (359)
Q Consensus 235 ~~~~~~g~~~~Kl~lGlp~yG~~ 257 (359)
+ .+|-.+..+.|||--+||+
T Consensus 255 ~---~~~~~r~~v~~GiDVf~Rg 274 (526)
T KOG2331|consen 255 E---QAGDRRHRVFMGIDVFGRG 274 (526)
T ss_pred H---hhhhhhhceEEEeEEEecc
Confidence 2 2455578999999999985
No 33
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=89.38 E-value=4.9 Score=38.09 Aligned_cols=88 Identities=19% Similarity=0.141 Sum_probs=47.8
Q ss_pred CcEEEEEeEEEeCCCcE----E-ecCccchHHHHHHHHHHHhcCCCceEEEEEc--CCCCCCC------cc--------c
Q 036029 48 FTHLMCGFADVNSTSYE----L-SLSPSDEKQFSNFTDTVKKKNPSITTLLSIG--GGKNPNY------ST--------Y 106 (359)
Q Consensus 48 ~Thii~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~lk~~~~~~kvllsig--g~~~~~~------~~--------~ 106 (359)
+-=|+.....+.+.+.. + ...+..-+.++++++.+|+. +.|+++-|. |... .. +. .
T Consensus 47 ~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~~~vh~~--g~~~~~QL~h~G~~~-~~~~~~~ps~~~~~~~~~~ 123 (353)
T cd02930 47 VGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITDAVHAE--GGKIALQILHAGRYA-YHPLCVAPSAIRAPINPFT 123 (353)
T ss_pred ceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHHHHHHHc--CCEEEeeccCCCCCC-CCCCCcCCCCCCCCCCCCC
Confidence 44455665556554311 1 12333557778888888876 788888773 2211 00 00 0
Q ss_pred ccccCC---hhhHHHHHHHHHHHHHHcCcceEEEEe
Q 036029 107 SSMASN---PSSRKSFIDSSIKIARLYGFQGLDLSW 139 (359)
Q Consensus 107 ~~~~~~---~~~r~~f~~~i~~~l~~~~~DGidiD~ 139 (359)
...++. .+..+.|++.+.. +++-|||||+|..
T Consensus 124 p~~mt~~eI~~i~~~f~~aA~~-a~~aGfDgVeih~ 158 (353)
T cd02930 124 PRELSEEEIEQTIEDFARCAAL-AREAGYDGVEIMG 158 (353)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH-HHHcCCCEEEEec
Confidence 011111 2244566665554 5557999999976
No 34
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=88.05 E-value=7.3 Score=36.80 Aligned_cols=89 Identities=12% Similarity=0.186 Sum_probs=50.0
Q ss_pred CcEEEEEeEEEeCCCc----EE-ecCccchHHHHHHHHHHHhcCCCceEEEEEc--CCCCCCCc--cc-----c------
Q 036029 48 FTHLMCGFADVNSTSY----EL-SLSPSDEKQFSNFTDTVKKKNPSITTLLSIG--GGKNPNYS--TY-----S------ 107 (359)
Q Consensus 48 ~Thii~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~lk~~~~~~kvllsig--g~~~~~~~--~~-----~------ 107 (359)
.--|+-....+++.+. .+ ...+..-+.++++++.+|++ +.|+++-|. |... ... .. +
T Consensus 47 ~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~--g~~~~~Ql~H~G~~~-~~~~~~~~~~~ps~~~~~~ 123 (343)
T cd04734 47 AGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAVHAH--GAVIMIQLTHLGRRG-DGDGSWLPPLAPSAVPEPR 123 (343)
T ss_pred CCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHHHHHhc--CCeEEEeccCCCcCc-CcccCCCcccCCCCCCCCC
Confidence 4445666666665531 11 12333457788898888887 678887774 3221 000 00 0
Q ss_pred -----cccCC---hhhHHHHHHHHHHHHHHcCcceEEEEee
Q 036029 108 -----SMASN---PSSRKSFIDSSIKIARLYGFQGLDLSWS 140 (359)
Q Consensus 108 -----~~~~~---~~~r~~f~~~i~~~l~~~~~DGidiD~E 140 (359)
+.++- .+..+.|++.+. ..++-|||||+|..-
T Consensus 124 ~~~~~~~mt~~eI~~ii~~f~~AA~-ra~~aGfDgVeih~a 163 (343)
T cd04734 124 HRAVPKAMEEEDIEEIIAAFADAAR-RCQAGGLDGVELQAA 163 (343)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHH-HHHHcCCCEEEEccc
Confidence 01111 234566776554 445679999999983
No 35
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=87.69 E-value=5.8 Score=40.62 Aligned_cols=85 Identities=14% Similarity=0.212 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEcCC-----CC-----CCCcccc-----------------cccCChhhHHHHHHHHHH
Q 036029 73 KQFSNFTDTVKKKNPSITTLLSIGGG-----KN-----PNYSTYS-----------------SMASNPSSRKSFIDSSIK 125 (359)
Q Consensus 73 ~~~~~~~~~lk~~~~~~kvllsigg~-----~~-----~~~~~~~-----------------~~~~~~~~r~~f~~~i~~ 125 (359)
..++.+++.+|++ +++|+|-+--. .. ..+..+. ....++..|+-+++++.-
T Consensus 229 ~efk~lV~~~H~~--Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~ 306 (605)
T TIGR02104 229 RELKQMIQALHEN--GIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLY 306 (605)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHH
Confidence 5688999888887 89999877210 00 0000010 011256778889999999
Q ss_pred HHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHh
Q 036029 126 IARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEA 166 (359)
Q Consensus 126 ~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~ 166 (359)
|++++++||+-+|.-... + ..|+++++.+++...
T Consensus 307 W~~e~~iDGfR~D~~~~~---~----~~~~~~~~~~~~~~~ 340 (605)
T TIGR02104 307 WVKEYNIDGFRFDLMGIH---D----IETMNEIRKALNKID 340 (605)
T ss_pred HHHHcCCCEEEEechhcC---C----HHHHHHHHHHHHhhC
Confidence 999999999999964222 1 347888888887654
No 36
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=87.30 E-value=5.8 Score=36.30 Aligned_cols=73 Identities=23% Similarity=0.311 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCC------c
Q 036029 73 KQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTS------W 146 (359)
Q Consensus 73 ~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~------~ 146 (359)
..+...+...++..++..++++|+|.. + +.++ .+++.+.++|+|+|+|++-.|... .
T Consensus 83 ~~~~~~i~~~~~~~~~~pvi~si~g~~-------------~---~~~~-~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~ 145 (289)
T cd02810 83 DVWLQDIAKAKKEFPGQPLIASVGGSS-------------K---EDYV-ELARKIERAGAKALELNLSCPNVGGGRQLGQ 145 (289)
T ss_pred HHHHHHHHHHHhccCCCeEEEEeccCC-------------H---HHHH-HHHHHHHHhCCCEEEEEcCCCCCCCCccccc
Confidence 334333333333325788999998843 1 2333 345566677999999999766432 1
Q ss_pred chhhHHHHHHHHHHHH
Q 036029 147 DNYNIGILFKEWRAAV 162 (359)
Q Consensus 147 ~~~~~~~ll~~l~~~l 162 (359)
+.+...++++++|+..
T Consensus 146 ~~~~~~eiv~~vr~~~ 161 (289)
T cd02810 146 DPEAVANLLKAVKAAV 161 (289)
T ss_pred CHHHHHHHHHHHHHcc
Confidence 3344556666666655
No 37
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=87.17 E-value=4.7 Score=40.62 Aligned_cols=92 Identities=17% Similarity=0.237 Sum_probs=61.3
Q ss_pred chHHHHHHHHHHHhcCCCceEEEEEcCC-CCCCC---------------ccccc--ccCCh---hhHHHHHHHHHHHHHH
Q 036029 71 DEKQFSNFTDTVKKKNPSITTLLSIGGG-KNPNY---------------STYSS--MASNP---SSRKSFIDSSIKIARL 129 (359)
Q Consensus 71 ~~~~~~~~~~~lk~~~~~~kvllsigg~-~~~~~---------------~~~~~--~~~~~---~~r~~f~~~i~~~l~~ 129 (359)
....++.+++.+|++ +++|+|-+--. ..++. ..|.. -..++ ..|+-+++++.-|+++
T Consensus 158 ~~~e~k~lV~~aH~~--Gi~VilD~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e 235 (542)
T TIGR02402 158 GPDDLKALVDAAHGL--GLGVILDVVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLRE 235 (542)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEEccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 456789999988888 89999887211 00000 01111 12234 7788899999999999
Q ss_pred cCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHhh
Q 036029 130 YGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEAR 167 (359)
Q Consensus 130 ~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~~ 167 (359)
+++||.-+|--...... .-..|++++++.++...+
T Consensus 236 ~~iDGfR~D~~~~~~~~---~~~~~l~~~~~~~~~~~p 270 (542)
T TIGR02402 236 YHFDGLRLDAVHAIADT---SAKHILEELAREVHELAA 270 (542)
T ss_pred hCCcEEEEeCHHHhccc---cHHHHHHHHHHHHHHHCC
Confidence 99999999953222111 125799999999987643
No 38
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=86.98 E-value=6 Score=42.19 Aligned_cols=85 Identities=15% Similarity=0.260 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCCCceEEEEE-------cCCCCCC------Ccccc----------------cccCChhhHHHHHHHH
Q 036029 73 KQFSNFTDTVKKKNPSITTLLSI-------GGGKNPN------YSTYS----------------SMASNPSSRKSFIDSS 123 (359)
Q Consensus 73 ~~~~~~~~~lk~~~~~~kvllsi-------gg~~~~~------~~~~~----------------~~~~~~~~r~~f~~~i 123 (359)
..++.+++.+|++ +++|+|-+ +|....+ +..+. ....++.-|+-+++++
T Consensus 404 ~Efk~mV~alH~~--Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl 481 (898)
T TIGR02103 404 KEFREMVQALNKT--GLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSL 481 (898)
T ss_pred HHHHHHHHHHHHC--CCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHH
Confidence 3678888888886 89999877 2211100 00010 1123466778899999
Q ss_pred HHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHh
Q 036029 124 IKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEA 166 (359)
Q Consensus 124 ~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~ 166 (359)
.-|+++|++||.-+|.-.-.. ..++++++.+++...
T Consensus 482 ~~W~~ey~VDGFRfDlm~~~~-------~~f~~~~~~~l~~i~ 517 (898)
T TIGR02103 482 VVWAKDYKVDGFRFDLMGHHP-------KAQMLAAREAIKALT 517 (898)
T ss_pred HHHHHHcCCCEEEEechhhCC-------HHHHHHHHHHHHHhC
Confidence 999999999999999753322 456777777776654
No 39
>PRK12313 glycogen branching enzyme; Provisional
Probab=86.61 E-value=6.8 Score=40.35 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=61.9
Q ss_pred chHHHHHHHHHHHhcCCCceEEEEEcCCCC-CC---------C-------------cccc---cccCChhhHHHHHHHHH
Q 036029 71 DEKQFSNFTDTVKKKNPSITTLLSIGGGKN-PN---------Y-------------STYS---SMASNPSSRKSFIDSSI 124 (359)
Q Consensus 71 ~~~~~~~~~~~lk~~~~~~kvllsigg~~~-~~---------~-------------~~~~---~~~~~~~~r~~f~~~i~ 124 (359)
....++.+++.+|++ +++|+|-+--... .+ + ..|. --..+++.|+-+++++.
T Consensus 218 t~~d~k~lv~~~H~~--Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~ 295 (633)
T PRK12313 218 TPEDFMYLVDALHQN--GIGVILDWVPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSAL 295 (633)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 456789999999888 8999988621100 00 0 0111 01236788899999999
Q ss_pred HHHHHcCcceEEEEee-ec----------------CCCcchhhHHHHHHHHHHHHHHHhh
Q 036029 125 KIARLYGFQGLDLSWS-WA----------------NTSWDNYNIGILFKEWRAAVALEAR 167 (359)
Q Consensus 125 ~~l~~~~~DGidiD~E-~~----------------~~~~~~~~~~~ll~~l~~~l~~~~~ 167 (359)
-|++++++||+-+|-- .. +...+. .=..|++++++.++...+
T Consensus 296 ~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~fl~~~~~~v~~~~p 354 (633)
T PRK12313 296 FWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENL-EAIYFLQKLNEVVYLEHP 354 (633)
T ss_pred HHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCc-HHHHHHHHHHHHHHHHCC
Confidence 9999999999999931 00 000111 236899999999987643
No 40
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=85.61 E-value=14 Score=35.14 Aligned_cols=151 Identities=15% Similarity=0.183 Sum_probs=77.0
Q ss_pred EEEEEeEEEeCCCcE-----EecCccchHHHHHHHHHHHhcCCCceEEEEEc--CCCCCCCc------cc----------
Q 036029 50 HLMCGFADVNSTSYE-----LSLSPSDEKQFSNFTDTVKKKNPSITTLLSIG--GGKNPNYS------TY---------- 106 (359)
Q Consensus 50 hii~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~lk~~~~~~kvllsig--g~~~~~~~------~~---------- 106 (359)
-|+-....+.+.+.. ....+..-+.++++++.+|++ +.|+++-|. |... ... .+
T Consensus 50 lIi~e~~~v~~~~~~~~~~~~~~~d~~i~~~~~l~~~vh~~--G~~i~~QL~h~G~~~-~~~~~~~~~~~~ps~~~~~~~ 126 (353)
T cd04735 50 MVITGATYVSPSGIGFEGGFSADDDSDIPGLRKLAQAIKSK--GAKAILQIFHAGRMA-NPALVPGGDVVSPSAIAAFRP 126 (353)
T ss_pred EEEECceEECcccCcCCCCceecChhhhHHHHHHHHHHHhC--CCeEEEEecCCCCCC-CccccCCCceecCCCCcccCC
Confidence 344454555544311 123455668889999888887 688887773 2211 000 00
Q ss_pred ----ccccCC---hhhHHHHHHHHHHHHHHcCcceEEEEeee---------cCC----------Ccchh-hHHHHHHHHH
Q 036029 107 ----SSMASN---PSSRKSFIDSSIKIARLYGFQGLDLSWSW---------ANT----------SWDNY-NIGILFKEWR 159 (359)
Q Consensus 107 ----~~~~~~---~~~r~~f~~~i~~~l~~~~~DGidiD~E~---------~~~----------~~~~~-~~~~ll~~l~ 159 (359)
.+.++. .+..+.|++.... +++.|||||+|..-+ |.. -+++. ...+.|+++|
T Consensus 127 ~~~~p~~mt~~eI~~ii~~f~~aA~~-a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr 205 (353)
T cd04735 127 GAHTPRELTHEEIEDIIDAFGEATRR-AIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQ 205 (353)
T ss_pred CCCCCccCCHHHHHHHHHHHHHHHHH-HHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHH
Confidence 011111 2344667766655 556799999999632 211 01121 2335666666
Q ss_pred HHHHHHhhcCCCCceEEEEEEeecCCCccccccC-------HhHHhc-cccEEEeeccc
Q 036029 160 AAVALEARNNSSQSQLILTARVAYSPYSTIGAYS-------IDSIRQ-YLNWVHVITAE 210 (359)
Q Consensus 160 ~~l~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~-------~~~l~~-~vD~i~vm~yd 210 (359)
++++..- ..++.|.+.+.+..... .+.+ .+.+.+ -+|+|.|....
T Consensus 206 ~~vg~~~-----~~~~~v~~R~s~~~~~~-~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~ 258 (353)
T cd04735 206 EVIDKHA-----DKDFILGYRFSPEEPEE-PGIRMEDTLALVDKLADKGLDYLHISLWD 258 (353)
T ss_pred HHhcccc-----CCCceEEEEECcccccC-CCCCHHHHHHHHHHHHHcCCCEEEeccCc
Confidence 6665110 00266777766432111 1111 233433 38999997643
No 41
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=85.42 E-value=4.4 Score=32.57 Aligned_cols=65 Identities=9% Similarity=0.189 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHhcCCCceEE--EEEcCCCCC-------------C-C---------cccccccCChhhHHHHHHHHHHH
Q 036029 72 EKQFSNFTDTVKKKNPSITTL--LSIGGGKNP-------------N-Y---------STYSSMASNPSSRKSFIDSSIKI 126 (359)
Q Consensus 72 ~~~~~~~~~~lk~~~~~~kvl--lsigg~~~~-------------~-~---------~~~~~~~~~~~~r~~f~~~i~~~ 126 (359)
...++.+++.+|++ ++||+ ++++ +... + . ..+...--|..-++.++..+.++
T Consensus 43 ~Dllge~v~a~h~~--Girv~ay~~~~-~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei 119 (132)
T PF14871_consen 43 RDLLGEQVEACHER--GIRVPAYFDFS-WDEDAAERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREI 119 (132)
T ss_pred cCHHHHHHHHHHHC--CCEEEEEEeee-cChHHHHhCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHH
Confidence 35677888888888 67777 4444 3220 0 0 12445666777888888889888
Q ss_pred HHHcCcceEEEEe
Q 036029 127 ARLYGFQGLDLSW 139 (359)
Q Consensus 127 l~~~~~DGidiD~ 139 (359)
+++|++|||-+||
T Consensus 120 ~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 120 LDRYDVDGIFFDI 132 (132)
T ss_pred HHcCCCCEEEecC
Confidence 8999999999986
No 42
>PRK12568 glycogen branching enzyme; Provisional
Probab=85.23 E-value=9.9 Score=39.58 Aligned_cols=95 Identities=14% Similarity=0.271 Sum_probs=63.2
Q ss_pred chHHHHHHHHHHHhcCCCceEEEEEcCCCC-CC---------C-------------ccccc---ccCChhhHHHHHHHHH
Q 036029 71 DEKQFSNFTDTVKKKNPSITTLLSIGGGKN-PN---------Y-------------STYSS---MASNPSSRKSFIDSSI 124 (359)
Q Consensus 71 ~~~~~~~~~~~lk~~~~~~kvllsigg~~~-~~---------~-------------~~~~~---~~~~~~~r~~f~~~i~ 124 (359)
....++.+++.+|++ +++|+|-+--... .+ + ..|.. -..+++.|+-+++++.
T Consensus 317 ~~~dfk~lV~~~H~~--Gi~VIlD~V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~ 394 (730)
T PRK12568 317 SPDGFAQFVDACHRA--GIGVILDWVSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSAL 394 (730)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHH
Confidence 456789999988887 8999988621100 00 0 01111 2346788899999999
Q ss_pred HHHHHcCcceEEEEe-e-------------ecCC-Ccchhh--HHHHHHHHHHHHHHHhh
Q 036029 125 KIARLYGFQGLDLSW-S-------------WANT-SWDNYN--IGILFKEWRAAVALEAR 167 (359)
Q Consensus 125 ~~l~~~~~DGidiD~-E-------------~~~~-~~~~~~--~~~ll~~l~~~l~~~~~ 167 (359)
-||+++++||+-+|- . +... ...+++ =..|+++|++.++...+
T Consensus 395 ~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P 454 (730)
T PRK12568 395 EWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFP 454 (730)
T ss_pred HHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHCC
Confidence 999999999999992 1 1110 011223 35799999999987754
No 43
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=85.09 E-value=5.2 Score=37.20 Aligned_cols=55 Identities=15% Similarity=0.048 Sum_probs=38.0
Q ss_pred ChhhHHHHHHHHHHHHHHcCcceEEEEeeecC----C-----CcchhhHHHHHHHHHHHHHHHhh
Q 036029 112 NPSSRKSFIDSSIKIARLYGFQGLDLSWSWAN----T-----SWDNYNIGILFKEWRAAVALEAR 167 (359)
Q Consensus 112 ~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~----~-----~~~~~~~~~ll~~l~~~l~~~~~ 167 (359)
+++-|+-+.+. ++.+.+.||||+.+|.--.. . +...+..++|+++|.+..+...+
T Consensus 142 ~~~W~~il~~r-l~~l~~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P 205 (315)
T TIGR01370 142 DPEWKAIAFSY-LDRVIAQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNP 205 (315)
T ss_pred cHHHHHHHHHH-HHHHHHcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCC
Confidence 44555555554 67778889999999962111 0 23346788999999888887754
No 44
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=84.84 E-value=11 Score=38.69 Aligned_cols=95 Identities=15% Similarity=0.184 Sum_probs=62.1
Q ss_pred chHHHHHHHHHHHhcCCCceEEEEEcCC-CCCC---------C-------------ccccc---ccCChhhHHHHHHHHH
Q 036029 71 DEKQFSNFTDTVKKKNPSITTLLSIGGG-KNPN---------Y-------------STYSS---MASNPSSRKSFIDSSI 124 (359)
Q Consensus 71 ~~~~~~~~~~~lk~~~~~~kvllsigg~-~~~~---------~-------------~~~~~---~~~~~~~r~~f~~~i~ 124 (359)
....++.+++.+|++ +++|+|-+--. ...+ . ..|.. -..+++.|+-+++++.
T Consensus 204 t~~dlk~lV~~~H~~--Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~ 281 (613)
T TIGR01515 204 TPDDFMYFVDACHQA--GIGVILDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANAL 281 (613)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHH
Confidence 456789999989888 89999876210 0000 0 00110 1246788999999999
Q ss_pred HHHHHcCcceEEEEee-ecC-------------CC-c--chhhHHHHHHHHHHHHHHHhh
Q 036029 125 KIARLYGFQGLDLSWS-WAN-------------TS-W--DNYNIGILFKEWRAAVALEAR 167 (359)
Q Consensus 125 ~~l~~~~~DGidiD~E-~~~-------------~~-~--~~~~~~~ll~~l~~~l~~~~~ 167 (359)
-|++++++||+-+|-- ... .. . ....=..|++++++.++...+
T Consensus 282 ~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p 341 (613)
T TIGR01515 282 YWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFP 341 (613)
T ss_pred HHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCC
Confidence 9999999999999952 110 00 0 011235799999999987643
No 45
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=84.67 E-value=14 Score=34.64 Aligned_cols=47 Identities=6% Similarity=0.036 Sum_probs=29.9
Q ss_pred CCcEEEEEeEEEeCCCcE----E-ecCccchHHHHHHHHHHHhcCCCceEEEEE
Q 036029 47 LFTHLMCGFADVNSTSYE----L-SLSPSDEKQFSNFTDTVKKKNPSITTLLSI 95 (359)
Q Consensus 47 ~~Thii~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~lk~~~~~~kvllsi 95 (359)
.+--|+.....+.+.+.. + ...+..-+.++++++.+|++ +.|+++-+
T Consensus 46 g~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~~vh~~--G~~~~~QL 97 (336)
T cd02932 46 GAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFIHSQ--GAKIGIQL 97 (336)
T ss_pred CCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHHHHHhc--CCcEEEEc
Confidence 355566666666655421 1 22344567788888888886 68888776
No 46
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=83.82 E-value=15 Score=34.58 Aligned_cols=70 Identities=14% Similarity=0.278 Sum_probs=40.8
Q ss_pred CccchHHHHHHHHHHHhcCCCceEEEEEc--CCCCCCC----ccc-----------------ccccCC---hhhHHHHHH
Q 036029 68 SPSDEKQFSNFTDTVKKKNPSITTLLSIG--GGKNPNY----STY-----------------SSMASN---PSSRKSFID 121 (359)
Q Consensus 68 ~~~~~~~~~~~~~~lk~~~~~~kvllsig--g~~~~~~----~~~-----------------~~~~~~---~~~r~~f~~ 121 (359)
.+..-+.++++++.+|++ +.|+++-|. |... .. ..+ ...++. .+..+.|++
T Consensus 77 ~d~~i~~~~~l~~~vh~~--G~~~~~Ql~h~G~~~-~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~ 153 (338)
T cd04733 77 SGEDLEAFREWAAAAKAN--GALIWAQLNHPGRQS-PAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAH 153 (338)
T ss_pred CHHHHHHHHHHHHHHHhc--CCEEEEEccCCCcCC-CccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHH
Confidence 344567788888888887 678887663 3221 00 000 011111 123456776
Q ss_pred HHHHHHHHcCcceEEEEeee
Q 036029 122 SSIKIARLYGFQGLDLSWSW 141 (359)
Q Consensus 122 ~i~~~l~~~~~DGidiD~E~ 141 (359)
.+ ..+++.|||||+|..-.
T Consensus 154 aA-~ra~~aGfDgVeih~a~ 172 (338)
T cd04733 154 AA-RLAQEAGFDGVQIHAAH 172 (338)
T ss_pred HH-HHHHHcCCCEEEEchhh
Confidence 55 45677899999998653
No 47
>PLN02960 alpha-amylase
Probab=82.81 E-value=15 Score=38.96 Aligned_cols=94 Identities=9% Similarity=0.084 Sum_probs=61.9
Q ss_pred chHHHHHHHHHHHhcCCCceEEEEEc----CCC-------CC-CC------------ccccc---ccCChhhHHHHHHHH
Q 036029 71 DEKQFSNFTDTVKKKNPSITTLLSIG----GGK-------NP-NY------------STYSS---MASNPSSRKSFIDSS 123 (359)
Q Consensus 71 ~~~~~~~~~~~lk~~~~~~kvllsig----g~~-------~~-~~------------~~~~~---~~~~~~~r~~f~~~i 123 (359)
....++.+++.+|++ +++|+|-+- +.. .. .. ..|.. -..+++.|+-+++++
T Consensus 464 tp~dfk~LVd~aH~~--GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna 541 (897)
T PLN02960 464 TPDDFKRLVDEAHGL--GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNL 541 (897)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHH
Confidence 456788999988887 899998871 000 00 00 01211 134678888899999
Q ss_pred HHHHHHcCcceEEEEee-------------------ecCCCcchhhHHHHHHHHHHHHHHHhh
Q 036029 124 IKIARLYGFQGLDLSWS-------------------WANTSWDNYNIGILFKEWRAAVALEAR 167 (359)
Q Consensus 124 ~~~l~~~~~DGidiD~E-------------------~~~~~~~~~~~~~ll~~l~~~l~~~~~ 167 (359)
.-||++|++||+-+|=- ++.. ..-..-..||++|.+.++...+
T Consensus 542 ~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~-~~d~~Ai~fL~~lN~~v~~~~P 603 (897)
T PLN02960 542 NWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQ-YVDRDALIYLILANEMLHQLHP 603 (897)
T ss_pred HHHHHHHCCCceeecccceeeeeccCccccCCcccccCCc-cCCchHHHHHHHHHHHHHhhCC
Confidence 99999999999999821 1111 1123456789999998886543
No 48
>PRK10785 maltodextrin glucosidase; Provisional
Probab=80.97 E-value=12 Score=38.38 Aligned_cols=118 Identities=10% Similarity=0.035 Sum_probs=69.2
Q ss_pred CcEEEEEeEEEeCCCcEEecC-----cc---chHHHHHHHHHHHhcCCCceEEEEEc----CCC----------------
Q 036029 48 FTHLMCGFADVNSTSYELSLS-----PS---DEKQFSNFTDTVKKKNPSITTLLSIG----GGK---------------- 99 (359)
Q Consensus 48 ~Thii~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~lk~~~~~~kvllsig----g~~---------------- 99 (359)
+|+|-+.-+.-.+..+..... ++ +...++.+++.+|++ ++||+|-+- |..
T Consensus 193 v~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~r--GikVilD~V~NH~~~~~~~f~~~~~~~~ga~~ 270 (598)
T PRK10785 193 VTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQR--GMRLVLDGVFNHTGDSHPWFDRHNRGTGGACH 270 (598)
T ss_pred CCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHC--CCEEEEEECCCcCCCCCHHHHHhhcccccccc
Confidence 777777665544432221111 11 457789999888888 899998772 100
Q ss_pred CCCCc--------------cccc-------ccCChhhHHHHHH---H-HHHHHHH-cCcceEEEEeeecCC-CcchhhHH
Q 036029 100 NPNYS--------------TYSS-------MASNPSSRKSFID---S-SIKIARL-YGFQGLDLSWSWANT-SWDNYNIG 152 (359)
Q Consensus 100 ~~~~~--------------~~~~-------~~~~~~~r~~f~~---~-i~~~l~~-~~~DGidiD~E~~~~-~~~~~~~~ 152 (359)
.+++. .|.. -..|++.|+.+++ + +..||++ +|.||.-||--.... ......-.
T Consensus 271 ~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~ 350 (598)
T PRK10785 271 HPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNL 350 (598)
T ss_pred CCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccH
Confidence 00000 0110 1236777888886 3 4558886 899999999632111 11122345
Q ss_pred HHHHHHHHHHHHHhh
Q 036029 153 ILFKEWRAAVALEAR 167 (359)
Q Consensus 153 ~ll~~l~~~l~~~~~ 167 (359)
.|+++++++++..++
T Consensus 351 ~f~~~~~~~vk~~~p 365 (598)
T PRK10785 351 QHVAGITQAAKEENP 365 (598)
T ss_pred HHHHHHHHHHHhhCC
Confidence 899999999987643
No 49
>PRK14706 glycogen branching enzyme; Provisional
Probab=79.97 E-value=25 Score=36.22 Aligned_cols=95 Identities=12% Similarity=0.089 Sum_probs=62.4
Q ss_pred chHHHHHHHHHHHhcCCCceEEEEEcC----CCC-----CC-Cc-------------cccc---ccCChhhHHHHHHHHH
Q 036029 71 DEKQFSNFTDTVKKKNPSITTLLSIGG----GKN-----PN-YS-------------TYSS---MASNPSSRKSFIDSSI 124 (359)
Q Consensus 71 ~~~~~~~~~~~lk~~~~~~kvllsigg----~~~-----~~-~~-------------~~~~---~~~~~~~r~~f~~~i~ 124 (359)
....++.+++.+|++ +++|+|-+-- ... -+ +. .|.. -..+++.|+-+++++.
T Consensus 215 ~~~~~~~lv~~~H~~--gi~VilD~v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~ 292 (639)
T PRK14706 215 TPEDFKYLVNHLHGL--GIGVILDWVPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSAL 292 (639)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccccCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 456788999988887 8999987621 100 00 00 1111 1236788899999999
Q ss_pred HHHHHcCcceEEEEe-eecC--C--C----------cchhhHHHHHHHHHHHHHHHhh
Q 036029 125 KIARLYGFQGLDLSW-SWAN--T--S----------WDNYNIGILFKEWRAAVALEAR 167 (359)
Q Consensus 125 ~~l~~~~~DGidiD~-E~~~--~--~----------~~~~~~~~ll~~l~~~l~~~~~ 167 (359)
-|++++++||+-+|- .... + . .....=..||++|++.++...+
T Consensus 293 ~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p 350 (639)
T PRK14706 293 KWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAP 350 (639)
T ss_pred HHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCC
Confidence 999999999999994 2210 0 0 0112346799999999987643
No 50
>PRK05402 glycogen branching enzyme; Provisional
Probab=79.89 E-value=22 Score=37.29 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=62.8
Q ss_pred chHHHHHHHHHHHhcCCCceEEEEEcCC-CCCC---------C-------------cccc---cccCChhhHHHHHHHHH
Q 036029 71 DEKQFSNFTDTVKKKNPSITTLLSIGGG-KNPN---------Y-------------STYS---SMASNPSSRKSFIDSSI 124 (359)
Q Consensus 71 ~~~~~~~~~~~lk~~~~~~kvllsigg~-~~~~---------~-------------~~~~---~~~~~~~~r~~f~~~i~ 124 (359)
....++.+++.+|++ +++|+|-+--. ...+ + ..|. --..+++.|+-+++++.
T Consensus 313 t~~dfk~lV~~~H~~--Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~ 390 (726)
T PRK05402 313 TPDDFRYFVDACHQA--GIGVILDWVPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANAL 390 (726)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHH
Confidence 456789999999887 89999886210 0000 0 0111 12346788889999999
Q ss_pred HHHHHcCcceEEEEe-eecC----C------------CcchhhHHHHHHHHHHHHHHHhh
Q 036029 125 KIARLYGFQGLDLSW-SWAN----T------------SWDNYNIGILFKEWRAAVALEAR 167 (359)
Q Consensus 125 ~~l~~~~~DGidiD~-E~~~----~------------~~~~~~~~~ll~~l~~~l~~~~~ 167 (359)
-||+++++||+-+|- .... + ..+...-..|++++++.++...+
T Consensus 391 ~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p 450 (726)
T PRK05402 391 YWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFP 450 (726)
T ss_pred HHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHHCC
Confidence 999999999999994 2110 0 00111346899999999987643
No 51
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.68 E-value=4.5 Score=38.98 Aligned_cols=125 Identities=12% Similarity=0.104 Sum_probs=75.0
Q ss_pred hhhHHHHHHHHHHHHHHcCcceEEEEeee--cCC----------------------Cc-----chhhHHHHHHHHHHHHH
Q 036029 113 PSSRKSFIDSSIKIARLYGFQGLDLSWSW--ANT----------------------SW-----DNYNIGILFKEWRAAVA 163 (359)
Q Consensus 113 ~~~r~~f~~~i~~~l~~~~~DGidiD~E~--~~~----------------------~~-----~~~~~~~ll~~l~~~l~ 163 (359)
++-|+-..+-+++.+++|..|||.+|--. +.. +. -+++...|++.+...++
T Consensus 181 Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VK 260 (418)
T COG1649 181 PEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVK 260 (418)
T ss_pred hHHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45566666778889999999999999632 110 01 14578899999999999
Q ss_pred HHhhcCCCCceEEEEEEe-ecCCCcccccc-----CHhHH--hccccEEEeecccccCCCCCCCCCCCCcccccHHHHHH
Q 036029 164 LEARNNSSQSQLILTARV-AYSPYSTIGAY-----SIDSI--RQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGIT 235 (359)
Q Consensus 164 ~~~~~~~~~~~~~ls~~~-~~~~~~~~~~~-----~~~~l--~~~vD~i~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~ 235 (359)
+.++ ...+++++ +. .....-.| |.... ..++|++..|.|=-+. ... ...+....
T Consensus 261 avKp------~v~~svsp~n~-~~~~~f~y~~~~qDw~~Wv~~G~iD~l~pqvYr~~~-------~~~----~~~~~~~~ 322 (418)
T COG1649 261 AVKP------NVKFSVSPFNP-LGSATFAYDYFLQDWRRWVRQGLIDELAPQVYRTLS-------TFV----AEYDTLAK 322 (418)
T ss_pred hhCC------CeEEEEccCCC-CCccceehhhhhhhHHHHHHcccHhhhhhhhhcccc-------cch----hhhhhHHH
Confidence 8765 57778776 31 11100122 21111 4579999999993211 111 12334445
Q ss_pred HHHHCCCC-CCceeeecccce
Q 036029 236 AWTDEGLS-ADKLVLGLPCYG 255 (359)
Q Consensus 236 ~~~~~g~~-~~Kl~lGlp~yG 255 (359)
.|.+.-+| +-.|..|+..|.
T Consensus 323 ~wa~~~~~~~i~i~~G~~~~~ 343 (418)
T COG1649 323 WWANTVIPTRIGIYIGLAAYK 343 (418)
T ss_pred Hhhhhhcccceeeecchhhcc
Confidence 56544333 346777776664
No 52
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=78.71 E-value=22 Score=37.32 Aligned_cols=94 Identities=10% Similarity=0.056 Sum_probs=59.7
Q ss_pred chHHHHHHHHHHHhcCCCceEEEEEcCCCC-C------------CCcc-----------ccc---ccCChhhHHHHHHHH
Q 036029 71 DEKQFSNFTDTVKKKNPSITTLLSIGGGKN-P------------NYST-----------YSS---MASNPSSRKSFIDSS 123 (359)
Q Consensus 71 ~~~~~~~~~~~lk~~~~~~kvllsigg~~~-~------------~~~~-----------~~~---~~~~~~~r~~f~~~i 123 (359)
....++.+++.+|++ +++|+|-+--... . .... |.. -..+++-|+-+++++
T Consensus 298 tp~dlk~LVd~aH~~--GI~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~ 375 (758)
T PLN02447 298 TPEDLKYLIDKAHSL--GLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNL 375 (758)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHH
Confidence 456789999989887 8999987621100 0 0001 110 112467788899999
Q ss_pred HHHHHHcCcceEEEEee-------------ec-------CCCcchhhHHHHHHHHHHHHHHHhh
Q 036029 124 IKIARLYGFQGLDLSWS-------------WA-------NTSWDNYNIGILFKEWRAAVALEAR 167 (359)
Q Consensus 124 ~~~l~~~~~DGidiD~E-------------~~-------~~~~~~~~~~~ll~~l~~~l~~~~~ 167 (359)
.-|+++|++||+-+|-- +. +...|. .=+.||+.+...++...+
T Consensus 376 ~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~-~a~~fL~~~N~~i~~~~p 438 (758)
T PLN02447 376 RWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDV-DAVVYLMLANDLLHGLYP 438 (758)
T ss_pred HHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccCh-HHHHHHHHHHHHHHHhCC
Confidence 99999999999999831 10 111222 235688888888877643
No 53
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=78.23 E-value=26 Score=32.97 Aligned_cols=89 Identities=10% Similarity=0.115 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEc---CCCCCC----CcccccccCC--hhhHHHHHHHHHHHHHHcCcceEEEEeeecC
Q 036029 73 KQFSNFTDTVKKKNPSITTLLSIG---GGKNPN----YSTYSSMASN--PSSRKSFIDSSIKIARLYGFQGLDLSWSWAN 143 (359)
Q Consensus 73 ~~~~~~~~~lk~~~~~~kvllsig---g~~~~~----~~~~~~~~~~--~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~ 143 (359)
.....+.+++|+. |+||||.+- =|.++. +..|..+--+ .+....+..++++.|+.. |+..||-+.+
T Consensus 58 ~~~~~~akrak~~--Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~---G~~pd~VQVG 132 (332)
T PF07745_consen 58 EDVIALAKRAKAA--GMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAA---GVTPDMVQVG 132 (332)
T ss_dssp HHHHHHHHHHHHT--T-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHT---T--ESEEEES
T ss_pred HHHHHHHHHHHHC--CCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHC---CCCccEEEeC
Confidence 3344454455554 899999983 222221 2233332111 233455677777777775 5778886655
Q ss_pred C------------CcchhhHHHHHHHHHHHHHHHh
Q 036029 144 T------------SWDNYNIGILFKEWRAAVALEA 166 (359)
Q Consensus 144 ~------------~~~~~~~~~ll~~l~~~l~~~~ 166 (359)
+ ..+.+++..||++-.++.++..
T Consensus 133 NEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~ 167 (332)
T PF07745_consen 133 NEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVD 167 (332)
T ss_dssp SSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHS
T ss_pred ccccccccCcCCCccCHHHHHHHHHHHHHHHHhcC
Confidence 3 3566778888877778887654
No 54
>PLN03244 alpha-amylase; Provisional
Probab=76.79 E-value=32 Score=36.13 Aligned_cols=66 Identities=11% Similarity=0.125 Sum_probs=45.9
Q ss_pred chHHHHHHHHHHHhcCCCceEEEEEcCCCC-CC-----------C-cc-----------cc---cccCChhhHHHHHHHH
Q 036029 71 DEKQFSNFTDTVKKKNPSITTLLSIGGGKN-PN-----------Y-ST-----------YS---SMASNPSSRKSFIDSS 123 (359)
Q Consensus 71 ~~~~~~~~~~~lk~~~~~~kvllsigg~~~-~~-----------~-~~-----------~~---~~~~~~~~r~~f~~~i 123 (359)
....++.|++.+|++ +++|+|-+--... ++ . .. |. --..+++.|+-+++++
T Consensus 439 TPeDLK~LVD~aH~~--GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna 516 (872)
T PLN03244 439 TPDDFKRLVDEAHGL--GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNL 516 (872)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHH
Confidence 456789999989887 8999988621100 00 0 01 11 1122467888899999
Q ss_pred HHHHHHcCcceEEEE
Q 036029 124 IKIARLYGFQGLDLS 138 (359)
Q Consensus 124 ~~~l~~~~~DGidiD 138 (359)
.-||++|++||+-+|
T Consensus 517 ~yWleEyhIDGFRfD 531 (872)
T PLN03244 517 NWWITEYQIDGFQFH 531 (872)
T ss_pred HHHHHHhCcCcceee
Confidence 999999999999998
No 55
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=75.83 E-value=64 Score=29.53 Aligned_cols=124 Identities=14% Similarity=0.079 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHc-CcceEEEEeeecCCC-------------cchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEee
Q 036029 117 KSFIDSSIKIARLY-GFQGLDLSWSWANTS-------------WDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVA 182 (359)
Q Consensus 117 ~~f~~~i~~~l~~~-~~DGidiD~E~~~~~-------------~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~ 182 (359)
.+.|.+|-+=|..| .||||-+.-....++ ...+.+..|..+|++..+...+ ++...--+.
T Consensus 121 r~~I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~~~~~~Kt~~Li~ft~eL~~~v~~~rp------~lkTARNiy 194 (294)
T PF14883_consen 121 RQIIKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQNPADRQKTRALIDFTMELAAAVRRYRP------DLKTARNIY 194 (294)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccChhhHHHHHHHHHHHHHHHHHHHHhCc------cchhhhccc
Confidence 35688888888888 799998843322111 1224778899999999887632 111111111
Q ss_pred cCCCc---ccccc--CHhHHhccccEEEeecccccCCCCCCCCCCCCcccccHHHHHHHHHHCCCCCCceeeecccc
Q 036029 183 YSPYS---TIGAY--SIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGLPCY 254 (359)
Q Consensus 183 ~~~~~---~~~~~--~~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~~~~g~~~~Kl~lGlp~y 254 (359)
+.+-. ....| ++....+.-|+.-+|+.-++.. .. .|. .++...++...+...+.+|+|+-|-..
T Consensus 195 a~pvl~P~se~WfAQnl~~fl~~YD~taimAMPymE~----~~---~~~-~WL~~Lv~~v~~~p~~l~KtvFELQa~ 263 (294)
T PF14883_consen 195 AEPVLNPESEAWFAQNLDDFLKAYDYTAIMAMPYMEQ----AE---DPE-QWLAQLVDAVAARPGGLDKTVFELQAV 263 (294)
T ss_pred ccccCCcchhhHHHHhHHHHHHhCCeeheeccchhcc----cc---CHH-HHHHHHHHHHHhcCCcccceEEEEecc
Confidence 11111 11112 4666777779999998866543 11 222 367777777777666679999988653
No 56
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=74.37 E-value=37 Score=32.45 Aligned_cols=90 Identities=11% Similarity=0.167 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHhcCCCceEEEEEcCCCCCCCcccc------------cccCChhhHHHHHHHHHHHHHHcCcceEEEEe
Q 036029 72 EKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYS------------SMASNPSSRKSFIDSSIKIARLYGFQGLDLSW 139 (359)
Q Consensus 72 ~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~------------~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~ 139 (359)
+...+.|.+.+|++ ++..++++.-. +..|. ..-..+...+.|+.=+++.++.+.=.||.|++
T Consensus 103 D~gQrwfL~~Ak~r--GV~~f~aFSNS----PP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~ 176 (384)
T PF14587_consen 103 DAGQRWFLKAAKER--GVNIFEAFSNS----PPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDY 176 (384)
T ss_dssp SHHHHHHHHHHHHT--T---EEEE-SS----S-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEE
T ss_pred CHHHHHHHHHHHHc--CCCeEEEeecC----CCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccce
Confidence 34556677767765 78888876320 11110 11123567888998888888888778999998
Q ss_pred eecCC--------------CcchhhHHHHHHHHHHHHHHHhh
Q 036029 140 SWANT--------------SWDNYNIGILFKEWRAAVALEAR 167 (359)
Q Consensus 140 E~~~~--------------~~~~~~~~~ll~~l~~~l~~~~~ 167 (359)
-.|.+ ..+.+....+++.|+.+|++++.
T Consensus 177 IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL 218 (384)
T PF14587_consen 177 ISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGL 218 (384)
T ss_dssp EE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-
T ss_pred eCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 65542 12456778999999999999875
No 57
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=73.70 E-value=1.8 Score=32.62 Aligned_cols=12 Identities=42% Similarity=0.456 Sum_probs=8.2
Q ss_pred CchhhHHHHHHH
Q 036029 1 MASKIIVLVLHI 12 (359)
Q Consensus 1 M~~~~~~~l~~~ 12 (359)
|+||++++|.++
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 998876655444
No 58
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=73.56 E-value=5.6 Score=40.06 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=37.6
Q ss_pred ChhhHHHHHHHHHHHHHHcCcceEEEEeeec--------CCC--cchhhHHHHHHHHHHHHHH
Q 036029 112 NPSSRKSFIDSSIKIARLYGFQGLDLSWSWA--------NTS--WDNYNIGILFKEWRAAVAL 164 (359)
Q Consensus 112 ~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~--------~~~--~~~~~~~~ll~~l~~~l~~ 164 (359)
|+.-|.-++++..+.++..||||+.||=-.. +.+ .-+..|..||+++++++..
T Consensus 239 N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~ 301 (559)
T PF13199_consen 239 NPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPD 301 (559)
T ss_dssp -HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCC
Confidence 5667888999999999999999999995221 111 2256899999999999953
No 59
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=73.43 E-value=25 Score=36.64 Aligned_cols=87 Identities=15% Similarity=0.195 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHhcCCCceEEEEEcC----CCC---C-------CCccc-----------------c--cccCChhhHHH
Q 036029 72 EKQFSNFTDTVKKKNPSITTLLSIGG----GKN---P-------NYSTY-----------------S--SMASNPSSRKS 118 (359)
Q Consensus 72 ~~~~~~~~~~lk~~~~~~kvllsigg----~~~---~-------~~~~~-----------------~--~~~~~~~~r~~ 118 (359)
...++.+++.+|++ +++|+|-+-= ... + ++..+ . --..++..|+-
T Consensus 244 ~~efk~LV~~~H~~--GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~ 321 (688)
T TIGR02100 244 VAEFKTMVRALHDA--GIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQM 321 (688)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHH
Confidence 35688899888887 8999987721 000 0 00000 0 01225677888
Q ss_pred HHHHHHHHHHHcCcceEEEEeeecCCC--cchhhHHHHHHHHHH
Q 036029 119 FIDSSIKIARLYGFQGLDLSWSWANTS--WDNYNIGILFKEWRA 160 (359)
Q Consensus 119 f~~~i~~~l~~~~~DGidiD~E~~~~~--~~~~~~~~ll~~l~~ 160 (359)
+++++.-|++++|+||.-+|.-..... ........|+++|+.
T Consensus 322 i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~ 365 (688)
T TIGR02100 322 VMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQ 365 (688)
T ss_pred HHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHh
Confidence 889999999999999999997432221 112234567777775
No 60
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=73.17 E-value=44 Score=31.50 Aligned_cols=127 Identities=9% Similarity=0.102 Sum_probs=68.8
Q ss_pred CCcEEEEEeEEEeCCCc----EEe-cCccchHHHHHHHHHHHhcCCCceEEEEEcCCCCCCCc---cc-----c------
Q 036029 47 LFTHLMCGFADVNSTSY----ELS-LSPSDEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYS---TY-----S------ 107 (359)
Q Consensus 47 ~~Thii~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~---~~-----~------ 107 (359)
.+--||.....+++.+. .+. .++..-+.++++++.+|++ +.|+++-|...+..... .. +
T Consensus 49 G~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~~vh~~--Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~ 126 (341)
T PF00724_consen 49 GAGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLKKLADAVHAH--GAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALP 126 (341)
T ss_dssp TTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHHHHHHHHHHT--TSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSS
T ss_pred CCceEEecccccccccccccccchhchhhHHHHHHHHHHHHHhc--CccceeeccccccccCcccCCCCccCcccccccC
Confidence 46667777777777542 122 2344567788888888887 78999877422110000 00 0
Q ss_pred ----------cccCC---hhhHHHHHHHHHHHHHHcCcceEEEEeeecC------C-------C------cchh-hHHHH
Q 036029 108 ----------SMASN---PSSRKSFIDSSIKIARLYGFQGLDLSWSWAN------T-------S------WDNY-NIGIL 154 (359)
Q Consensus 108 ----------~~~~~---~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~------~-------~------~~~~-~~~~l 154 (359)
+.++. .+..+.|++......+ -|||||+|.--+.. + + ++|- -..+.
T Consensus 127 ~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~~A~~-AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Ei 205 (341)
T PF00724_consen 127 SPIKFMGYPPREMTEEEIEEIIEDFAQAARRAKE-AGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEI 205 (341)
T ss_dssp TTTTETSCEEEE--HHHHHHHHHHHHHHHHHHHH-TT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHH
T ss_pred cccccCCCCCeeCCHHHHHHHHHHHHHHHHHHHH-hccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHH
Confidence 01111 1233556665555444 79999999975321 0 1 1222 22356
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEEEeecCC
Q 036029 155 FKEWRAAVALEARNNSSQSQLILTARVAYSP 185 (359)
Q Consensus 155 l~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~ 185 (359)
|+++|++++.. +.|.+.+++..
T Consensus 206 i~aIr~~vg~d---------~~v~~Rls~~~ 227 (341)
T PF00724_consen 206 IEAIREAVGPD---------FPVGVRLSPDD 227 (341)
T ss_dssp HHHHHHHHTGG---------GEEEEEEETTC
T ss_pred HHHHHHHhcCC---------ceEEEEEeeec
Confidence 66666666554 56888877554
No 61
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=72.98 E-value=33 Score=37.67 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEcCC-CC-------CCCcccc----------------cccCChhhHHHHHHHHHHHHH
Q 036029 73 KQFSNFTDTVKKKNPSITTLLSIGGG-KN-------PNYSTYS----------------SMASNPSSRKSFIDSSIKIAR 128 (359)
Q Consensus 73 ~~~~~~~~~lk~~~~~~kvllsigg~-~~-------~~~~~~~----------------~~~~~~~~r~~f~~~i~~~l~ 128 (359)
..++.+++.+|++ +++|+|-+==. .. ..+..+. ....++..|+-+++++.-|++
T Consensus 555 ~EfK~LV~alH~~--GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ 632 (1111)
T TIGR02102 555 AEFKNLINEIHKR--GMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVD 632 (1111)
T ss_pred HHHHHHHHHHHHC--CCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 5688899888887 89999876210 00 0000010 111246678889999999999
Q ss_pred HcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHH
Q 036029 129 LYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALE 165 (359)
Q Consensus 129 ~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~ 165 (359)
+|++||.-+|.-.. -+.. ++++++.+++..
T Consensus 633 ey~VDGFRfDl~g~---~d~~----~~~~~~~~l~~~ 662 (1111)
T TIGR02102 633 EFKVDGFRFDMMGD---HDAA----SIEIAYKEAKAI 662 (1111)
T ss_pred hcCCcEEEEecccc---CCHH----HHHHHHHHHHHh
Confidence 99999999997421 2333 455555555443
No 62
>PLN02877 alpha-amylase/limit dextrinase
Probab=72.67 E-value=23 Score=38.08 Aligned_cols=69 Identities=13% Similarity=0.213 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCCCceEEEEEc-------CCCCCC-------Cccccc----------------ccCChhhHHHHHHHH
Q 036029 74 QFSNFTDTVKKKNPSITTLLSIG-------GGKNPN-------YSTYSS----------------MASNPSSRKSFIDSS 123 (359)
Q Consensus 74 ~~~~~~~~lk~~~~~~kvllsig-------g~~~~~-------~~~~~~----------------~~~~~~~r~~f~~~i 123 (359)
.++.+++.+|++ +++|+|-+= |....+ +..+.+ ...++--|+-+++++
T Consensus 467 efk~mV~~lH~~--GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl 544 (970)
T PLN02877 467 EFRKMVQALNRI--GLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDL 544 (970)
T ss_pred HHHHHHHHHHHC--CCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHH
Confidence 478888888876 899998871 110000 001111 112244567789999
Q ss_pred HHHHHHcCcceEEEEeeecCC
Q 036029 124 IKIARLYGFQGLDLSWSWANT 144 (359)
Q Consensus 124 ~~~l~~~~~DGidiD~E~~~~ 144 (359)
.-|+++|+.||.-+|.-....
T Consensus 545 ~yW~~ey~VDGFRFDlmg~i~ 565 (970)
T PLN02877 545 LNWAVNYKVDGFRFDLMGHLM 565 (970)
T ss_pred HHHHHHhCCCEEEEEcccccc
Confidence 999999999999999865543
No 63
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=72.05 E-value=11 Score=38.55 Aligned_cols=85 Identities=14% Similarity=-0.068 Sum_probs=38.5
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCCCCcccccccCCh-hhHHHHHHHHHHHH-HHcCcceEEEEeeecCCCcchhhHHHH
Q 036029 77 NFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNP-SSRKSFIDSSIKIA-RLYGFQGLDLSWSWANTSWDNYNIGIL 154 (359)
Q Consensus 77 ~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~-~~r~~f~~~i~~~l-~~~~~DGidiD~E~~~~~~~~~~~~~l 154 (359)
.+++.+|++||++|+..-= |.. +.....-...+ ...+.-+.-+++|| -.+.-.|++||+-.+- .+|..=...
T Consensus 116 ~L~~eAKkrNP~ikl~~L~--W~~--PgW~~~g~~~~~~~~~~~a~Y~~~wl~ga~~~~gl~idYvg~~--NEr~~~~~~ 189 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLP--WGF--PGWVGNGWNWPYDNPQLTAYYVVSWLLGAKKTHGLDIDYVGIW--NERGFDVNY 189 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEE--S-B---GGGGTTSS-TTSSHHHHHHHHHHHHHHHHHHH-----EE-S---TTS---HHH
T ss_pred hhHHHHHhhCCCCeEEEec--cCC--CccccCCCCCcccchhhhhHHHHHHHHHHHHHhCCCceEechh--hccCCChhH
Confidence 5677899999999977432 432 22222111111 11122223345655 2233456778886542 334334578
Q ss_pred HHHHHHHHHHHhh
Q 036029 155 FKEWRAAVALEAR 167 (359)
Q Consensus 155 l~~l~~~l~~~~~ 167 (359)
+|.||..|+.++.
T Consensus 190 ik~lr~~l~~~gy 202 (669)
T PF02057_consen 190 IKWLRKALNSNGY 202 (669)
T ss_dssp HHHHHHHHHHTT-
T ss_pred HHHHHHHHhhccc
Confidence 9999999988764
No 64
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=71.01 E-value=9.7 Score=34.78 Aligned_cols=85 Identities=9% Similarity=0.154 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHcCcceEEEEe-eecCCC---------------cchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEE
Q 036029 117 KSFIDSSIKIARLYGFQGLDLSW-SWANTS---------------WDNYNIGILFKEWRAAVALEARNNSSQSQLILTAR 180 (359)
Q Consensus 117 ~~f~~~i~~~l~~~~~DGidiD~-E~~~~~---------------~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~ 180 (359)
-++--+|++...+.|||-|.+|+ .+|.+- +..+.+.+||.--|+.+.. -+|+.
T Consensus 195 WeYNvtIAKEa~~fGfdEiQFDYIRFP~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE~l~v-----------pIS~D 263 (400)
T COG1306 195 WEYNVTIAKEAAKFGFDEIQFDYIRFPADGGGLDKALNYRNTDNMTKSEALQSFLHYAREELEV-----------PISAD 263 (400)
T ss_pred hhhhHHHHHHHHHcCccceeeeEEEccCCCCchhhhhcccccccCChHHHHHHHHHHHHHhccc-----------ceEEE
Confidence 34445788889999999999999 666531 1234566677666666652 35555
Q ss_pred eecCC-Ccc---ccccCHhHHhccccEEEeeccccc
Q 036029 181 VAYSP-YST---IGAYSIDSIRQYLNWVHVITAEYS 212 (359)
Q Consensus 181 ~~~~~-~~~---~~~~~~~~l~~~vD~i~vm~yd~~ 212 (359)
+-... +.. ..+=++..|+.+||.|.-|.|--|
T Consensus 264 IYG~nGw~~t~~~~GQ~~e~ls~yVDvIsPMfYPSH 299 (400)
T COG1306 264 IYGQNGWSSTDMALGQFWEALSSYVDVISPMFYPSH 299 (400)
T ss_pred eecccCccCCcchhhhhHHHHHhhhhhccccccccc
Confidence 54221 111 122367899999999999999543
No 65
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=69.80 E-value=10 Score=35.39 Aligned_cols=89 Identities=11% Similarity=0.164 Sum_probs=48.0
Q ss_pred CcEEEEEeEEEeCCCcE-----EecCccchHHHHHHHHHHHhcCCCceEEEEEc--CCCCCCCc-----c----------
Q 036029 48 FTHLMCGFADVNSTSYE-----LSLSPSDEKQFSNFTDTVKKKNPSITTLLSIG--GGKNPNYS-----T---------- 105 (359)
Q Consensus 48 ~Thii~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~lk~~~~~~kvllsig--g~~~~~~~-----~---------- 105 (359)
+.-|+.....+.+.+.. ...++..-+.++++++.+|++ +.|+++-|. |... ... .
T Consensus 47 ~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~--g~~~~~Ql~h~G~~~-~~~~~~~~~~~~s~~~~~~ 123 (327)
T cd02803 47 VGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLTEAVHAH--GAKIFAQLAHAGRQA-QPNLTGGPPPAPSAIPSPG 123 (327)
T ss_pred CcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHHHHHHHHHhC--CCHhhHHhhCCCcCC-CCcCCCCCccCCCCCCCCC
Confidence 55566666666665421 123344667788888888887 667665552 3221 000 0
Q ss_pred ---cccccCC---hhhHHHHHHHHHHHHHHcCcceEEEEee
Q 036029 106 ---YSSMASN---PSSRKSFIDSSIKIARLYGFQGLDLSWS 140 (359)
Q Consensus 106 ---~~~~~~~---~~~r~~f~~~i~~~l~~~~~DGidiD~E 140 (359)
..+.++. .+..+.|++.+.. +++.|||||+|..-
T Consensus 124 ~~~~~~~mt~~ei~~~i~~~~~aA~~-a~~aGfDgveih~~ 163 (327)
T cd02803 124 GGEPPREMTKEEIEQIIEDFAAAARR-AKEAGFDGVEIHGA 163 (327)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHH-HHHcCCCEEEEcch
Confidence 0011111 1233455554444 45579999999974
No 66
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=68.71 E-value=34 Score=31.83 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=28.0
Q ss_pred cCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecC
Q 036029 85 KNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWAN 143 (359)
Q Consensus 85 ~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~ 143 (359)
...+..+.+.|+|.+ + +.|++ .+..+++.|+|||||+.-.|.
T Consensus 59 ~~~~~p~i~ql~g~~-------------~---~~~~~-aa~~~~~~G~d~IelN~gcP~ 100 (319)
T TIGR00737 59 AEDETPISVQLFGSD-------------P---DTMAE-AAKINEELGADIIDINMGCPV 100 (319)
T ss_pred CCccceEEEEEeCCC-------------H---HHHHH-HHHHHHhCCCCEEEEECCCCH
Confidence 334567788888844 2 23333 444667789999999986663
No 67
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=68.39 E-value=29 Score=31.94 Aligned_cols=148 Identities=12% Similarity=0.077 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcC-cceEEEEeeecCC-CcchhhH
Q 036029 74 QFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYG-FQGLDLSWSWANT-SWDNYNI 151 (359)
Q Consensus 74 ~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~-~DGidiD~E~~~~-~~~~~~~ 151 (359)
.+..+++.+++. +..++..+-.+.. +.. .-..+.-+.+...+++-|++.+ +|||-|+.-.... +...+.=
T Consensus 46 ~~~g~~~~a~~~--g~e~vp~~~a~A~--P~G----~v~~~aye~l~~eil~~l~~agp~Dgv~L~LHGAmv~e~~~D~E 117 (292)
T PF07364_consen 46 EIGGFLDAAEAQ--GWEVVPLLWAAAE--PGG----PVTREAYERLRDEILDRLRAAGPLDGVLLDLHGAMVAEGYDDGE 117 (292)
T ss_dssp HHHHHHHHHHHT--T-EEEEEEEEEE---SEE-----B-HHHHHHHHHHHHHHHHHS---SEEEEEE-S---BSS-SSHH
T ss_pred chHHHHHHHHHC--CCEEEeeEeeeec--CCC----cccHHHHHHHHHHHHHHHHhcCCcCEEEEeccCcEeecCCCCch
Confidence 345566556555 6788877744332 111 1235666788999999999986 9999999865442 1222334
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEEEEeecCCCccccccCHhHHhccccEEEeecccccCCCCCCCCCCCCcccccHH
Q 036029 152 GILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTE 231 (359)
Q Consensus 152 ~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl~~~~~ 231 (359)
..||+++|+.++.. .-|.+++-...+.. +.+.+.+|.+. +| .+.||...+..-.
T Consensus 118 G~Ll~rvR~~vGp~---------vpI~~tlDlHaNvs------~~mv~~ad~~~--~y---------rtyPH~D~~etg~ 171 (292)
T PF07364_consen 118 GDLLRRVRAIVGPD---------VPIAATLDLHANVS------PRMVEAADIIV--GY---------RTYPHIDMYETGE 171 (292)
T ss_dssp HHHHHHHHHHHTTT---------SEEEEEE-TT----------HHHHHH-SEEE--E------------SS---HHHHHH
T ss_pred HHHHHHHHHHhCCC---------CeEEEEeCCCCCcc------HHHHHhCCEEE--Ec---------CCCCccCHHHHHH
Confidence 67999999999876 34555544332222 57888888765 33 3345555542334
Q ss_pred HHHHHHH---HCCCCCCceeeecccce
Q 036029 232 YGITAWT---DEGLSADKLVLGLPCYG 255 (359)
Q Consensus 232 ~~~~~~~---~~g~~~~Kl~lGlp~yG 255 (359)
.+.+.+. +.++.|.+-..-+|+-.
T Consensus 172 ~aa~ll~~~l~g~~rp~~a~~~~P~l~ 198 (292)
T PF07364_consen 172 RAARLLLRALRGEIRPVMALRRLPMLL 198 (292)
T ss_dssp HHHHHHHHTTT-SS--EEEEEEE-B--
T ss_pred HHHHHHHHHHcCCCCceEEEecCCeEc
Confidence 4444443 34566777777776643
No 68
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=68.29 E-value=12 Score=35.83 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHhcCCCceEEEEEc---CCCCCCC-----------cc---------cccccCC---hhhHHHHHHHHHH
Q 036029 72 EKQFSNFTDTVKKKNPSITTLLSIG---GGKNPNY-----------ST---------YSSMASN---PSSRKSFIDSSIK 125 (359)
Q Consensus 72 ~~~~~~~~~~lk~~~~~~kvllsig---g~~~~~~-----------~~---------~~~~~~~---~~~r~~f~~~i~~ 125 (359)
-+.++++++.+|++ +.++++-|. |... .. +. ....++. .+..+.|++.. .
T Consensus 82 i~~~k~l~davh~~--G~~i~~QL~H~~Gr~~-~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA-~ 157 (382)
T cd02931 82 IRTAKEMTERVHAY--GTKIFLQLTAGFGRVC-IPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGESA-V 157 (382)
T ss_pred hHHHHHHHHHHHHc--CCEEEEEccCcCCCcc-CccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHHH-H
Confidence 46788888888877 788888872 3221 00 00 0011111 13456677655 4
Q ss_pred HHHHcCcceEEEEe
Q 036029 126 IARLYGFQGLDLSW 139 (359)
Q Consensus 126 ~l~~~~~DGidiD~ 139 (359)
..++.|||||+|..
T Consensus 158 ra~~AGfDgVEih~ 171 (382)
T cd02931 158 IAKEAGFDGVEIHA 171 (382)
T ss_pred HHHHcCCCEEEEec
Confidence 44557999999997
No 69
>PRK14705 glycogen branching enzyme; Provisional
Probab=68.05 E-value=52 Score=36.60 Aligned_cols=94 Identities=12% Similarity=0.107 Sum_probs=62.1
Q ss_pred chHHHHHHHHHHHhcCCCceEEEEEcCCCC-CC---------C-------------ccccc---ccCChhhHHHHHHHHH
Q 036029 71 DEKQFSNFTDTVKKKNPSITTLLSIGGGKN-PN---------Y-------------STYSS---MASNPSSRKSFIDSSI 124 (359)
Q Consensus 71 ~~~~~~~~~~~lk~~~~~~kvllsigg~~~-~~---------~-------------~~~~~---~~~~~~~r~~f~~~i~ 124 (359)
....++.+++.+|++ +++|+|-+=-... .+ . ..|.. -..+++-|+-+++++.
T Consensus 813 t~~dfk~lVd~~H~~--GI~VILD~V~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~ 890 (1224)
T PRK14705 813 HPDEFRFLVDSLHQA--GIGVLLDWVPAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANAL 890 (1224)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccCCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHH
Confidence 567789999999888 8999987621100 00 0 01111 1246788888999999
Q ss_pred HHHHHcCcceEEEEee-ecC----C--C--------cchh--hHHHHHHHHHHHHHHHh
Q 036029 125 KIARLYGFQGLDLSWS-WAN----T--S--------WDNY--NIGILFKEWRAAVALEA 166 (359)
Q Consensus 125 ~~l~~~~~DGidiD~E-~~~----~--~--------~~~~--~~~~ll~~l~~~l~~~~ 166 (359)
-|+++|++||+-+|-- ... + + ..++ .=+.|++++.+.++...
T Consensus 891 ~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~ 949 (1224)
T PRK14705 891 YWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTH 949 (1224)
T ss_pred HHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHC
Confidence 9999999999999962 110 0 0 0111 23689999999998764
No 70
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=67.91 E-value=19 Score=34.28 Aligned_cols=90 Identities=12% Similarity=0.120 Sum_probs=48.7
Q ss_pred CcEEEEEeEEEeCCCcE-----E-ecCccchHHHHHHHHHHHhcCCCceEEEEEc--CCCCCCCc--------c------
Q 036029 48 FTHLMCGFADVNSTSYE-----L-SLSPSDEKQFSNFTDTVKKKNPSITTLLSIG--GGKNPNYS--------T------ 105 (359)
Q Consensus 48 ~Thii~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~lk~~~~~~kvllsig--g~~~~~~~--------~------ 105 (359)
+--|+.....+...+.. . ...+..-+.++++++.+|++ +.|+++-|. |... ... .
T Consensus 47 ~GlIite~~~V~~~~~~~~~~~~~~~~d~~i~~~~~l~d~vh~~--Ga~i~~QL~H~Gr~~-~~~~~~~~~~~~~~ps~~ 123 (361)
T cd04747 47 VGLIITEGTAVDHPAASGDPNVPRFHGEDALAGWKKVVDEVHAA--GGKIAPQLWHVGAMR-KLGTPPFPDVPPLSPSGL 123 (361)
T ss_pred ccEEEecceEeccccccCCCCCCccCCHHHHHHHHHHHHHHHhc--CCEEEEeccCCCCCc-CcccCccCCCceeCCCCC
Confidence 44455555566433211 1 12334567778888888887 788888772 2211 000 0
Q ss_pred ------cccccCC---hhhHHHHHHHHHHHHHHcCcceEEEEeee
Q 036029 106 ------YSSMASN---PSSRKSFIDSSIKIARLYGFQGLDLSWSW 141 (359)
Q Consensus 106 ------~~~~~~~---~~~r~~f~~~i~~~l~~~~~DGidiD~E~ 141 (359)
..+.++. .+..+.|++.. ...++.|||||+|.--.
T Consensus 124 ~~~~~~~p~~mt~~eI~~ii~~f~~AA-~~a~~aGfDgVeih~ah 167 (361)
T cd04747 124 VGPGKPVGREMTEADIDDVIAAFARAA-ADARRLGFDGIELHGAH 167 (361)
T ss_pred CcCCCCCCccCCHHHHHHHHHHHHHHH-HHHHHcCCCEEEEeccc
Confidence 0011111 12345677655 44455799999999765
No 71
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=67.67 E-value=65 Score=30.36 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=26.8
Q ss_pred EEEEeEEEeCCCcE----E-ecCccchHHHHHHHHHHHhcCCCceEEEEEc
Q 036029 51 LMCGFADVNSTSYE----L-SLSPSDEKQFSNFTDTVKKKNPSITTLLSIG 96 (359)
Q Consensus 51 ii~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~lk~~~~~~kvllsig 96 (359)
|+.....+.+.+.. + ...+..-+.++++++.+|++ +.|+++-+.
T Consensus 50 Ii~~~~~v~~~g~~~~~~~~l~~d~~i~~lr~la~~vh~~--ga~~~~QL~ 98 (338)
T cd02933 50 IITEATQISPQGQGYPNTPGIYTDEQVEGWKKVTDAVHAK--GGKIFLQLW 98 (338)
T ss_pred EEeCceeeCccccCCCCCCccCCHHHHHHHHHHHHHHHhc--CCeEEEEcc
Confidence 44455555554311 1 12334557788888888887 788887773
No 72
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=67.52 E-value=11 Score=27.35 Aligned_cols=35 Identities=14% Similarity=0.254 Sum_probs=28.6
Q ss_pred ccccccCC-hhhHHHHHHHHHHHHHHcCcceEEEEe
Q 036029 105 TYSSMASN-PSSRKSFIDSSIKIARLYGFQGLDLSW 139 (359)
Q Consensus 105 ~~~~~~~~-~~~r~~f~~~i~~~l~~~~~DGidiD~ 139 (359)
.+.....+ +.-|..+++.+++.+..-.+|||.+|-
T Consensus 40 ~~~~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn 75 (79)
T PF14885_consen 40 HYQMYVWSCPDYRRYWVDAVVEELQNSPWDGVFADN 75 (79)
T ss_pred eeeeccCCcchHHHHHHHHHHHHHhcCccceeeeec
Confidence 34444444 899999999999999988899999984
No 73
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=67.03 E-value=42 Score=30.80 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=36.8
Q ss_pred CCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCC-------cchhhHHHHHHHHH
Q 036029 87 PSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTS-------WDNYNIGILFKEWR 159 (359)
Q Consensus 87 ~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~-------~~~~~~~~ll~~l~ 159 (359)
...+++++|+|.. .+.|++ ++..+++.|+|+|+|++-.|... .+.+...++++++|
T Consensus 88 ~~~p~ivsi~g~~----------------~~~~~~-~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr 150 (296)
T cd04740 88 FGTPVIASIAGST----------------VEEFVE-VAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVK 150 (296)
T ss_pred CCCcEEEEEecCC----------------HHHHHH-HHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHH
Confidence 3678999998732 234544 44566778999999998766431 22334445555555
Q ss_pred HHH
Q 036029 160 AAV 162 (359)
Q Consensus 160 ~~l 162 (359)
+..
T Consensus 151 ~~~ 153 (296)
T cd04740 151 KAT 153 (296)
T ss_pred hcc
Confidence 544
No 74
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=66.09 E-value=53 Score=31.56 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCC
Q 036029 73 KQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANT 144 (359)
Q Consensus 73 ~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~ 144 (359)
..+...+..+|++.|.+.++.||.|... .+.|. .+++.+++.|.|+++|++-.|..
T Consensus 98 ~~~l~~i~~~k~~~~~~pvIaSi~~~~s--~~~~~--------------~~a~~~e~~GaD~iELNiSCPn~ 153 (385)
T PLN02495 98 ETMLAEFKQLKEEYPDRILIASIMEEYN--KDAWE--------------EIIERVEETGVDALEINFSCPHG 153 (385)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEccCCCC--HHHHH--------------HHHHHHHhcCCCEEEEECCCCCC
Confidence 3343334457777778899999955221 23332 23345667899999999977654
No 75
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=65.37 E-value=36 Score=29.71 Aligned_cols=63 Identities=21% Similarity=0.376 Sum_probs=37.7
Q ss_pred hcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCC-----------CcchhhHH
Q 036029 84 KKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANT-----------SWDNYNIG 152 (359)
Q Consensus 84 ~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~-----------~~~~~~~~ 152 (359)
.......++++|+|.. + +.|++ .+..+++.|+|||+|+.-.|.. ..+.+...
T Consensus 50 ~~~~~~p~~~qi~g~~-------------~---~~~~~-aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~ 112 (231)
T cd02801 50 RNPEERPLIVQLGGSD-------------P---ETLAE-AAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVA 112 (231)
T ss_pred cCccCCCEEEEEcCCC-------------H---HHHHH-HHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHH
Confidence 3445788999998743 1 34443 3344556799999999755431 02333445
Q ss_pred HHHHHHHHHHH
Q 036029 153 ILFKEWRAAVA 163 (359)
Q Consensus 153 ~ll~~l~~~l~ 163 (359)
+.++++++..+
T Consensus 113 eii~~v~~~~~ 123 (231)
T cd02801 113 EIVRAVREAVP 123 (231)
T ss_pred HHHHHHHHhcC
Confidence 56666665543
No 76
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=64.99 E-value=44 Score=30.77 Aligned_cols=58 Identities=12% Similarity=0.133 Sum_probs=36.1
Q ss_pred CceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcC-cceEEEEeeecCCC-------cchhhHHHHHHHHH
Q 036029 88 SITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYG-FQGLDLSWSWANTS-------WDNYNIGILFKEWR 159 (359)
Q Consensus 88 ~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~-~DGidiD~E~~~~~-------~~~~~~~~ll~~l~ 159 (359)
+..++++|+|.. .+.|++ ++..+++.| +|||+|+.-.|..+ .+.+...++++++|
T Consensus 91 ~~p~i~si~g~~----------------~~~~~~-~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr 153 (301)
T PRK07259 91 DTPIIANVAGST----------------EEEYAE-VAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVK 153 (301)
T ss_pred CCcEEEEeccCC----------------HHHHHH-HHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHH
Confidence 578999998732 145554 444567888 99999988544321 23344555566665
Q ss_pred HHH
Q 036029 160 AAV 162 (359)
Q Consensus 160 ~~l 162 (359)
+..
T Consensus 154 ~~~ 156 (301)
T PRK07259 154 EVV 156 (301)
T ss_pred Hhc
Confidence 554
No 77
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=64.78 E-value=50 Score=29.01 Aligned_cols=101 Identities=11% Similarity=0.060 Sum_probs=61.4
Q ss_pred ChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeecCCCccccc
Q 036029 112 NPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGA 191 (359)
Q Consensus 112 ~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~~~~~~~ 191 (359)
|.+....|+..+.+... ...|-+|.|....+++.-.+.+++||+.|++.+. .+-+.. ..|-.. -
T Consensus 87 d~~~~adYl~~l~~aA~-----P~~L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~--------~v~iVA--DEWCNT-~ 150 (248)
T PF07476_consen 87 DPDRMADYLAELEEAAA-----PFKLRIEGPMDAGSREAQIEALAELREELDRRGI--------NVEIVA--DEWCNT-L 150 (248)
T ss_dssp -HHHHHHHHHHHHHHHT-----TS-EEEE-SB--SSHHHHHHHHHHHHHHHHHCT----------EEEEE---TT--S-H
T ss_pred CHHHHHHHHHHHHHhcC-----CCeeeeeCCcCCCChHHHHHHHHHHHHHHHhcCC--------CCeEEe--ehhcCC-H
Confidence 55555666666665544 4568899999888999999999999999998863 333332 222111 1
Q ss_pred cCHhHH--hccccEEEeecccccCCCCCCCCCCCCcccccHHHHHHHHHHCC
Q 036029 192 YSIDSI--RQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAWTDEG 241 (359)
Q Consensus 192 ~~~~~l--~~~vD~i~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~~~~g 241 (359)
-|+... ++.+|.|-+.|=|+.|- .++-+++-+-.+.|
T Consensus 151 eDI~~F~da~A~dmVQIKtPDLGgi-------------~ntieAvlyCk~~g 189 (248)
T PF07476_consen 151 EDIREFADAKAADMVQIKTPDLGGI-------------NNTIEAVLYCKEHG 189 (248)
T ss_dssp HHHHHHHHTT-SSEEEE-GGGGSST-------------HHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCcCEEEecCCCccch-------------hhHHHHHHHHHhcC
Confidence 133433 46799999999999875 46666666655554
No 78
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=64.27 E-value=77 Score=30.24 Aligned_cols=129 Identities=12% Similarity=0.210 Sum_probs=68.2
Q ss_pred chHHHHHHHHHHHhcCCCceEEEEEcCCCCC----CC-----------------cccccccCCh---hhHHHHHHHHHHH
Q 036029 71 DEKQFSNFTDTVKKKNPSITTLLSIGGGKNP----NY-----------------STYSSMASNP---SSRKSFIDSSIKI 126 (359)
Q Consensus 71 ~~~~~~~~~~~lk~~~~~~kvllsigg~~~~----~~-----------------~~~~~~~~~~---~~r~~f~~~i~~~ 126 (359)
+-+.++++.+.+|++ +.|+++-|...+.. .. ....+.++.+ +..+.|++....-
T Consensus 81 ~i~~~~~vt~avH~~--G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA 158 (363)
T COG1902 81 QIPGLKRLTEAVHAH--GAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRA 158 (363)
T ss_pred HhHHHHHHHHHHHhc--CCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHH
Confidence 467788888888887 67888887432210 00 0011222222 2345666665555
Q ss_pred HHHcCcceEEEEeeecC---------C----Cc---chhhHHH----HHHHHHHHHHHHhhcCCCCceEEEEEEeecCCC
Q 036029 127 ARLYGFQGLDLSWSWAN---------T----SW---DNYNIGI----LFKEWRAAVALEARNNSSQSQLILTARVAYSPY 186 (359)
Q Consensus 127 l~~~~~DGidiD~E~~~---------~----~~---~~~~~~~----ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~~ 186 (359)
.+ -|||||+|.=-+.. + ++ .-+|=.+ .|+++|++.+.. +.|.+.+.+...
T Consensus 159 ~~-AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~---------~~vg~Rls~~d~ 228 (363)
T COG1902 159 KE-AGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGAD---------FPVGVRLSPDDF 228 (363)
T ss_pred HH-cCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCC---------ceEEEEECcccc
Confidence 55 79999999864311 0 11 1123334 445555555443 457777765433
Q ss_pred ccccccC-------HhHHhcc--ccEEEeecccc
Q 036029 187 STIGAYS-------IDSIRQY--LNWVHVITAEY 211 (359)
Q Consensus 187 ~~~~~~~-------~~~l~~~--vD~i~vm~yd~ 211 (359)
.....++ .+.|.+. +|++++..-+.
T Consensus 229 ~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~ 262 (363)
T COG1902 229 FDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGY 262 (363)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCccEEEeecccc
Confidence 1211232 3344443 69998877544
No 79
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=64.16 E-value=1.3e+02 Score=28.33 Aligned_cols=90 Identities=10% Similarity=0.146 Sum_probs=50.9
Q ss_pred CCcEEEEEeEEEeCCCc----EE-ecCccchHHHHHHHHHHHhcCCCceEEEEEc--CCCCCCC-------cc-------
Q 036029 47 LFTHLMCGFADVNSTSY----EL-SLSPSDEKQFSNFTDTVKKKNPSITTLLSIG--GGKNPNY-------ST------- 105 (359)
Q Consensus 47 ~~Thii~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~lk~~~~~~kvllsig--g~~~~~~-------~~------- 105 (359)
.+.-|+.....+.+.+. .+ ...+..-+.++++++.+|++ +.++++-|. |... .. +.
T Consensus 50 G~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d~vh~~--G~~i~~QL~H~G~~~-~~~~~~~~ps~~~~~~~~ 126 (337)
T PRK13523 50 QVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVTFIHDH--GAKAAIQLAHAGRKA-ELEGDIVAPSAIPFDEKS 126 (337)
T ss_pred CCeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHHHHHhc--CCEEEEEccCCCCCC-CCCCCccCCCCCCCCCCC
Confidence 35556666666655431 11 22344567788888888886 788887773 2211 00 00
Q ss_pred -cccccCC---hhhHHHHHHHHHHHHHHcCcceEEEEee
Q 036029 106 -YSSMASN---PSSRKSFIDSSIKIARLYGFQGLDLSWS 140 (359)
Q Consensus 106 -~~~~~~~---~~~r~~f~~~i~~~l~~~~~DGidiD~E 140 (359)
....++. .+..+.|++.. ..+++.|||||+|.--
T Consensus 127 ~~p~~mt~eeI~~ii~~f~~aA-~~a~~aGfDgVeih~a 164 (337)
T PRK13523 127 KTPVEMTKEQIKETVLAFKQAA-VRAKEAGFDVIEIHGA 164 (337)
T ss_pred CCCCcCCHHHHHHHHHHHHHHH-HHHHHcCCCEEEEccc
Confidence 0011111 13446677655 4556679999999976
No 80
>PRK03705 glycogen debranching enzyme; Provisional
Probab=63.57 E-value=32 Score=35.58 Aligned_cols=67 Identities=15% Similarity=0.204 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEcC----C---CCC-------CCc------------ccc-----cccCChhhHHHHHH
Q 036029 73 KQFSNFTDTVKKKNPSITTLLSIGG----G---KNP-------NYS------------TYS-----SMASNPSSRKSFID 121 (359)
Q Consensus 73 ~~~~~~~~~lk~~~~~~kvllsigg----~---~~~-------~~~------------~~~-----~~~~~~~~r~~f~~ 121 (359)
..++.+++.+|++ ++||+|-+== . ..+ ++. .|. --..++..|+-+++
T Consensus 242 ~efk~LV~~~H~~--GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid 319 (658)
T PRK03705 242 DEFRDAVKALHKA--GIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAID 319 (658)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHH
Confidence 4688899888887 8999987721 0 000 000 000 11236778889999
Q ss_pred HHHHHHHHcCcceEEEEeee
Q 036029 122 SSIKIARLYGFQGLDLSWSW 141 (359)
Q Consensus 122 ~i~~~l~~~~~DGidiD~E~ 141 (359)
++.-|+++++.||.-+|.-.
T Consensus 320 ~l~~W~~e~gVDGFRfD~a~ 339 (658)
T PRK03705 320 CLRYWVETCHVDGFRFDLAT 339 (658)
T ss_pred HHHHHHHHhCCCEEEEEcHh
Confidence 99999999999999999743
No 81
>PRK03995 hypothetical protein; Provisional
Probab=63.39 E-value=18 Score=32.77 Aligned_cols=68 Identities=15% Similarity=0.265 Sum_probs=42.0
Q ss_pred CCceEEEEEcCCCCCCCcccccccCCh-----------hhHHHHH-HHHHHHHHHc--CcceEEEEeeecCCCcchhhHH
Q 036029 87 PSITTLLSIGGGKNPNYSTYSSMASNP-----------SSRKSFI-DSSIKIARLY--GFQGLDLSWSWANTSWDNYNIG 152 (359)
Q Consensus 87 ~~~kvllsigg~~~~~~~~~~~~~~~~-----------~~r~~f~-~~i~~~l~~~--~~DGidiD~E~~~~~~~~~~~~ 152 (359)
...++++.|||... ...|..++... .. ..+- ..+.+.+++. ++|.+-|||....+ .+|+.+.
T Consensus 179 ~~~~~~iGiGGgHY--apr~T~~~l~~~~~~GHi~pky~l-~~~~~~~i~~a~~ks~~~~~~~~id~K~~k~-~~r~~i~ 254 (267)
T PRK03995 179 EKFKPAIGIGGGHY--APKFTKLALESEYCFGHIIPKYAL-DHLSEEVLIQAIEKSTPEIDRIVIDWKGVKS-EDRERII 254 (267)
T ss_pred cCCCEEEEECCCCc--cHHHHHHHhhCCeeEEeEccccch-hcCCHHHHHHHHHhccCCCCEEEEecCCCCH-HHHHHHH
Confidence 47899999999876 33333222211 10 0011 1244455553 68999999987765 7888888
Q ss_pred HHHHHH
Q 036029 153 ILFKEW 158 (359)
Q Consensus 153 ~ll~~l 158 (359)
.+++++
T Consensus 255 ~~le~~ 260 (267)
T PRK03995 255 EFLEEL 260 (267)
T ss_pred HHHHHC
Confidence 888765
No 82
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=63.31 E-value=77 Score=29.18 Aligned_cols=66 Identities=23% Similarity=0.217 Sum_probs=40.8
Q ss_pred HHHhcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCC----------cchhh
Q 036029 81 TVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTS----------WDNYN 150 (359)
Q Consensus 81 ~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~----------~~~~~ 150 (359)
.+++..+...+++++.|... + +.|++ +++.+++.+.|+|+|++-.|... .+.+.
T Consensus 92 ~~~~~~~~~p~i~si~G~~~------------~---~~~~~-~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~ 155 (299)
T cd02940 92 ELKKDFPDKILIASIMCEYN------------K---EDWTE-LAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPEL 155 (299)
T ss_pred HHHhhCCCCeEEEEecCCCC------------H---HHHHH-HHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHH
Confidence 44444445678899877411 1 34443 44556777999999999877531 34455
Q ss_pred HHHHHHHHHHHH
Q 036029 151 IGILFKEWRAAV 162 (359)
Q Consensus 151 ~~~ll~~l~~~l 162 (359)
+.++++.+++..
T Consensus 156 ~~~iv~~v~~~~ 167 (299)
T cd02940 156 VEEICRWVREAV 167 (299)
T ss_pred HHHHHHHHHHhc
Confidence 666666666544
No 83
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=63.09 E-value=31 Score=32.13 Aligned_cols=59 Identities=22% Similarity=0.132 Sum_probs=36.5
Q ss_pred CceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCC-----------CcchhhHHHHHH
Q 036029 88 SITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANT-----------SWDNYNIGILFK 156 (359)
Q Consensus 88 ~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~-----------~~~~~~~~~ll~ 156 (359)
...+.+.|+|.+ + +.|++.+. .+.+.|+|||||+.-.|.. -.+.+...++++
T Consensus 62 e~p~~vQl~g~~-------------p---~~~~~aA~-~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~ 124 (312)
T PRK10550 62 GTLVRIQLLGQY-------------P---QWLAENAA-RAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 (312)
T ss_pred CCcEEEEeccCC-------------H---HHHHHHHH-HHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHH
Confidence 356778887733 2 34555443 4566799999999977652 133445556666
Q ss_pred HHHHHHH
Q 036029 157 EWRAAVA 163 (359)
Q Consensus 157 ~l~~~l~ 163 (359)
++++++.
T Consensus 125 avr~~~~ 131 (312)
T PRK10550 125 AMREAVP 131 (312)
T ss_pred HHHHhcC
Confidence 6666553
No 84
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=62.86 E-value=35 Score=31.08 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=47.4
Q ss_pred chHHHHHHHHHHHhcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCCcchhh
Q 036029 71 DEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYN 150 (359)
Q Consensus 71 ~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~ 150 (359)
....+.++++..|++ +|+|+|-.--... ..... ..++ .+.+.+.+++.|..||-|||-. .+.+.
T Consensus 71 ~~~dl~elv~Ya~~K--gVgi~lw~~~~~~---~~~~~------~~~~-~~~~f~~~~~~Gv~GvKidF~~----~d~Q~ 134 (273)
T PF10566_consen 71 PDFDLPELVDYAKEK--GVGIWLWYHSETG---GNVAN------LEKQ-LDEAFKLYAKWGVKGVKIDFMD----RDDQE 134 (273)
T ss_dssp TT--HHHHHHHHHHT--T-EEEEEEECCHT---TBHHH------HHCC-HHHHHHHHHHCTEEEEEEE--S----STSHH
T ss_pred CccCHHHHHHHHHHc--CCCEEEEEeCCcc---hhhHh------HHHH-HHHHHHHHHHcCCCEEeeCcCC----CCCHH
Confidence 345678899888888 6888887632110 00111 2223 3888899999999999999963 34566
Q ss_pred HHHHHHHHHHHHHHH
Q 036029 151 IGILFKEWRAAVALE 165 (359)
Q Consensus 151 ~~~ll~~l~~~l~~~ 165 (359)
.+++.+++-+.-.+.
T Consensus 135 ~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 135 MVNWYEDILEDAAEY 149 (273)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 666666655555433
No 85
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=62.82 E-value=26 Score=33.47 Aligned_cols=91 Identities=18% Similarity=0.240 Sum_probs=51.2
Q ss_pred CcEEEEEeEEEeCCCcE-----E-ecCccchHHHHHHHHHHHhcCCCceEEEEEc--CCCCCC---------Cccc----
Q 036029 48 FTHLMCGFADVNSTSYE-----L-SLSPSDEKQFSNFTDTVKKKNPSITTLLSIG--GGKNPN---------YSTY---- 106 (359)
Q Consensus 48 ~Thii~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~lk~~~~~~kvllsig--g~~~~~---------~~~~---- 106 (359)
+.=|+.....+.+++.. + ...+..-+.++++++.+|++ +.|+++-|. |..... ++..
T Consensus 52 ~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~--G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~ 129 (370)
T cd02929 52 WGVVNTEQCSIHPSSDDTPRISARLWDDGDIRNLAAMTDAVHKH--GALAGIELWHGGAHAPNRESRETPLGPSQLPSEF 129 (370)
T ss_pred ceEEEEeeeEEccccccCcccCcCcCCHHHHHHHHHHHHHHHHC--CCeEEEecccCCCCCCccCCCCCccCCCCCCCCc
Confidence 45566666666655421 1 22444667788888888887 788887772 321100 0000
Q ss_pred -------ccccCC---hhhHHHHHHHHHHHHHHcCcceEEEEeee
Q 036029 107 -------SSMASN---PSSRKSFIDSSIKIARLYGFQGLDLSWSW 141 (359)
Q Consensus 107 -------~~~~~~---~~~r~~f~~~i~~~l~~~~~DGidiD~E~ 141 (359)
.+.++. .+..+.|++... .+++-|||||+|.--.
T Consensus 130 ~~~~~~~p~~mt~~eI~~ii~~f~~AA~-ra~~aGfDgVEih~ah 173 (370)
T cd02929 130 PTGGPVQAREMDKDDIKRVRRWYVDAAL-RARDAGFDIVYVYAAH 173 (370)
T ss_pred cccCCCCCccCCHHHHHHHHHHHHHHHH-HHHHcCCCEEEEcccc
Confidence 011111 124567776554 5566799999998764
No 86
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=61.61 E-value=32 Score=31.82 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=27.9
Q ss_pred cCChhhHHHHHHHHHHHHHHcCcceEEEEeeec
Q 036029 110 ASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWA 142 (359)
Q Consensus 110 ~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~ 142 (359)
..|++.|+=+.+.+.+++.+.|+||+=+|+-++
T Consensus 134 ftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 134 FTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCc
Confidence 457888888888888888899999999999554
No 87
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=60.52 E-value=72 Score=30.97 Aligned_cols=66 Identities=14% Similarity=0.125 Sum_probs=41.3
Q ss_pred HHHhcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCC----------cchhh
Q 036029 81 TVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTS----------WDNYN 150 (359)
Q Consensus 81 ~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~----------~~~~~ 150 (359)
.+++..+...++++|.|... + +.++ ..+..+++.|.|+|+|++-.|... .+.+.
T Consensus 92 ~~~~~~~~~p~i~si~g~~~------------~---~~~~-~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~ 155 (420)
T PRK08318 92 RVKRDYPDRALIASIMVECN------------E---EEWK-EIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPEL 155 (420)
T ss_pred HHHhhCCCceEEEEeccCCC------------H---HHHH-HHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHH
Confidence 44444445668899987421 1 2233 455566777899999999877521 35556
Q ss_pred HHHHHHHHHHHH
Q 036029 151 IGILFKEWRAAV 162 (359)
Q Consensus 151 ~~~ll~~l~~~l 162 (359)
+.++++++++..
T Consensus 156 ~~~i~~~v~~~~ 167 (420)
T PRK08318 156 VEMYTRWVKRGS 167 (420)
T ss_pred HHHHHHHHHhcc
Confidence 666777776654
No 88
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=59.99 E-value=82 Score=26.60 Aligned_cols=156 Identities=21% Similarity=0.181 Sum_probs=90.5
Q ss_pred cCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeecCCCccccc--cCHhHHhccccEEEee
Q 036029 130 YGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGA--YSIDSIRQYLNWVHVI 207 (359)
Q Consensus 130 ~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~~~~~~~--~~~~~l~~~vD~i~vm 207 (359)
-|.|=|| ...|..-+=..||.=.++++++..+.. ..+|..+.--|+..... --+.....-+||+-|-
T Consensus 19 GGAdIiD--VKNP~EGSLGANFPWvIr~i~Ev~p~d---------~~vSAT~GDvpYKPGT~slAalGaav~GaDYiKVG 87 (235)
T COG1891 19 GGADIID--VKNPAEGSLGANFPWVIREIREVVPED---------QEVSATVGDVPYKPGTASLAALGAAVAGADYIKVG 87 (235)
T ss_pred CCCceEe--ccCcccCcccCCChHHHHHHHHhCccc---------eeeeeeecCCCCCCchHHHHHHHhHhhCCceEEEe
Confidence 3566544 445554345679999999999988765 47888877554433211 1123344568999998
Q ss_pred cccccCCCCCCCCCCCCcccccHHHHHHHHHH-----CCCCCCceeeecccceeeeeecCCCCCCCCcccCCCCCCCCcc
Q 036029 208 TAEYSRPMWTNHTSAPAALVFNTEYGITAWTD-----EGLSADKLVLGLPCYGYAWTLVKPEDNGIGAAATGPALSDIGF 282 (359)
Q Consensus 208 ~yd~~~~~~~~~~~~~spl~~~~~~~~~~~~~-----~g~~~~Kl~lGlp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~ 282 (359)
-|+-. +.+++++.+.+ .-+.++|+++.- -|+-.++. |.
T Consensus 88 LYg~k----------------n~~eA~e~m~~vvrAVkd~d~~k~VVAa-GYaDa~Rv--------------------gs 130 (235)
T COG1891 88 LYGTK----------------NEEEALEVMKNVVRAVKDFDPSKKVVAA-GYADAHRV--------------------GS 130 (235)
T ss_pred ecccc----------------cHHHHHHHHHHHHHHHhccCCCceEEec-cccchhhc--------------------cC
Confidence 88532 33344443321 237788888754 22322221 33
Q ss_pred ccHHHHHHhhhhCCCCccEEEeCCeeeeEEE-eCCEEEEEcCHHHHHHHHHHHHHCCCc
Q 036029 283 VTYKEIKNYIKSYGPNVPVMYNSTYVMNYCS-IGKIWFGFDDVEAVRMKVAYAKEKKLR 340 (359)
Q Consensus 283 ~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~-~~~~~i~ydd~~S~~~K~~~~~~~gl~ 340 (359)
++.-.+.+.....| ....- ..-.. +++..+-|.+.+-+..-.+.++++||-
T Consensus 131 v~Pl~~P~vaa~ag--~DvaM-----vDTaiKDGkslFdfm~~e~l~eFvd~Ah~hGL~ 182 (235)
T COG1891 131 VSPLLLPEVAAEAG--ADVAM-----VDTAIKDGKSLFDFMDEEELEEFVDLAHEHGLE 182 (235)
T ss_pred cCccccHHHHHhcC--CCEEE-----EecccccchhHHhhhcHHHHHHHHHHHHHcchH
Confidence 44444444444444 21111 11111 456667799999999999999999973
No 89
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=59.96 E-value=22 Score=26.27 Aligned_cols=60 Identities=3% Similarity=0.011 Sum_probs=44.9
Q ss_pred cccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCC---------CcchhhHHHHHHHHHHHHHHH
Q 036029 106 YSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANT---------SWDNYNIGILFKEWRAAVALE 165 (359)
Q Consensus 106 ~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~---------~~~~~~~~~ll~~l~~~l~~~ 165 (359)
...........+.-...+.+.+++++++=--+|.|+.-+ .+.+.+|..|+++|...++..
T Consensus 14 ~~~~~~~~~~e~~al~~c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~a~~rvDFR~Lvr~L~~~f~~R 82 (88)
T PF04468_consen 14 IERLERLREREEEALKFCRELVKELGLPMKLVDVEYQFDGSKLTFYYTAESRVDFRELVRDLAREFKTR 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEcCCCEEEEEEEeCCcCcHHHHHHHHHHHhCce
Confidence 333333444446667778888899999888888887753 478899999999999999743
No 90
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=57.77 E-value=50 Score=30.79 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=48.2
Q ss_pred EEecCccchHHHHHHHHHHHhcCCCceEEEEEcCCCCCCC----------------------------cccccccCChhh
Q 036029 64 ELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNY----------------------------STYSSMASNPSS 115 (359)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~----------------------------~~~~~~~~~~~~ 115 (359)
...+....-+....+++.+|++ ++|+++.+--.-..++ ..+ -=..|++.
T Consensus 57 ~f~~d~~~FPdp~~mi~~L~~~--G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~-~Dftnp~a 133 (319)
T cd06591 57 EWKFDPERFPDPKAMVRELHEM--NAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRF-YDATNPEA 133 (319)
T ss_pred eEEEChhhCCCHHHHHHHHHHC--CCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccc-cCCCCHHH
Confidence 3333433334446778888877 7998887621100000 111 11347788
Q ss_pred HHHHHHHHHHHHHHcCcceEEEEeeec
Q 036029 116 RKSFIDSSIKIARLYGFQGLDLSWSWA 142 (359)
Q Consensus 116 r~~f~~~i~~~l~~~~~DGidiD~E~~ 142 (359)
|+-|.+.+.+.+.+.|.||+=+|.-.|
T Consensus 134 ~~w~~~~~~~~~~~~Gvdg~w~D~~Ep 160 (319)
T cd06591 134 REYYWKQLKKNYYDKGVDAWWLDAAEP 160 (319)
T ss_pred HHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 888888888889999999999999544
No 91
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=57.67 E-value=21 Score=33.87 Aligned_cols=81 Identities=10% Similarity=0.105 Sum_probs=51.8
Q ss_pred HHHHHHHhcCCCceEEEEEcC-C---CCCCCcccccccC-ChhhHHHHHHHHHHHHHHcCcceEEEEeeecCC-Ccchhh
Q 036029 77 NFTDTVKKKNPSITTLLSIGG-G---KNPNYSTYSSMAS-NPSSRKSFIDSSIKIARLYGFQGLDLSWSWANT-SWDNYN 150 (359)
Q Consensus 77 ~~~~~lk~~~~~~kvllsigg-~---~~~~~~~~~~~~~-~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~-~~~~~~ 150 (359)
.+++.+|+. ++.|+-.|-= + .+ +.+.+..|+. +++-.-.|++.+++..+.|||||--|+=|-.+. +++..+
T Consensus 131 DVIDaaHrN--GVPvlGt~Ffppk~ygg-~~ewv~~mLk~dedGsfP~A~klv~vAkyYGfdGwFINqET~G~~~~~a~~ 207 (553)
T COG4724 131 DVIDAAHRN--GVPVLGTLFFPPKNYGG-DQEWVAEMLKQDEDGSFPIARKLVDVAKYYGFDGWFINQETTGDVKPLAEK 207 (553)
T ss_pred hhhhhhhcC--CCceeeeeecChhhcCc-hHHHHHHHHhcCcCCCChhHHHHHHHHHhcCcceeEecccccCCCcchHHH
Confidence 455545444 8888877621 0 00 2345555554 445555789999999999999999999774432 355566
Q ss_pred HHHHHHHHHH
Q 036029 151 IGILFKEWRA 160 (359)
Q Consensus 151 ~~~ll~~l~~ 160 (359)
+.+|+.-+++
T Consensus 208 M~~f~ly~ke 217 (553)
T COG4724 208 MRQFMLYSKE 217 (553)
T ss_pred HHHHHHHHHh
Confidence 6666655553
No 92
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=57.55 E-value=16 Score=32.69 Aligned_cols=44 Identities=18% Similarity=0.253 Sum_probs=27.9
Q ss_pred EEEeecccccCCCCCCCCCCCC--cccccHHHHHHHHHH-CCCCCCceee
Q 036029 203 WVHVITAEYSRPMWTNHTSAPA--ALVFNTEYGITAWTD-EGLSADKLVL 249 (359)
Q Consensus 203 ~i~vm~yd~~~~~~~~~~~~~s--pl~~~~~~~~~~~~~-~g~~~~Kl~l 249 (359)
.+|+|+||+.|-.. .+|-++ .++.+++.+.+.+.. .| ++++|+|
T Consensus 88 n~nv~~~DYSGyG~--S~G~psE~n~y~Di~avye~Lr~~~g-~~~~Iil 134 (258)
T KOG1552|consen 88 NCNVVSYDYSGYGR--SSGKPSERNLYADIKAVYEWLRNRYG-SPERIIL 134 (258)
T ss_pred cceEEEEecccccc--cCCCcccccchhhHHHHHHHHHhhcC-CCceEEE
Confidence 57999999988632 223333 333567777776653 56 7777765
No 93
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=57.40 E-value=70 Score=29.99 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=42.8
Q ss_pred cchHHHHHHHHHHHhcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCCcc--
Q 036029 70 SDEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWD-- 147 (359)
Q Consensus 70 ~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~~~-- 147 (359)
.....+...+..++++ .++.++++|+|.+. +.+ ..++..+++.|+|+|+|++-.|..+.+
T Consensus 84 ~g~d~~~~~i~~~~~~-~~~pvi~sI~g~~~----------------~e~-~~~a~~~~~agad~ielN~scpp~~~~~~ 145 (334)
T PRK07565 84 VGPEEYLELIRRAKEA-VDIPVIASLNGSSA----------------GGW-VDYARQIEQAGADALELNIYYLPTDPDIS 145 (334)
T ss_pred cCHHHHHHHHHHHHHh-cCCcEEEEeccCCH----------------HHH-HHHHHHHHHcCCCEEEEeCCCCCCCCCCc
Confidence 3334444444445443 35889999987431 123 345556677799999999855332111
Q ss_pred ----hhhHHHHHHHHHHHH
Q 036029 148 ----NYNIGILFKEWRAAV 162 (359)
Q Consensus 148 ----~~~~~~ll~~l~~~l 162 (359)
.+.+.++++++++..
T Consensus 146 g~~~~~~~~eil~~v~~~~ 164 (334)
T PRK07565 146 GAEVEQRYLDILRAVKSAV 164 (334)
T ss_pred cccHHHHHHHHHHHHHhcc
Confidence 123556666666554
No 94
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=57.27 E-value=81 Score=29.30 Aligned_cols=73 Identities=16% Similarity=0.158 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcC-cceEEEEeeecCCC------
Q 036029 73 KQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYG-FQGLDLSWSWANTS------ 145 (359)
Q Consensus 73 ~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~-~DGidiD~E~~~~~------ 145 (359)
..+.+.+..+++..++..+++||-|.+ .+ .+. .+++.++..+ .|.|+|++-.|..+
T Consensus 77 ~~~~~~i~~~~~~~~~~pvI~Si~G~~---~~-------------~~~-~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g 139 (310)
T PRK02506 77 DYYLDYVLELQKKGPNKPHFLSVVGLS---PE-------------ETH-TILKKIQASDFNGLVELNLSCPNVPGKPQIA 139 (310)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEEeCc---HH-------------HHH-HHHHHHhhcCCCCEEEEECCCCCCCCccccc
Confidence 334333334555445688899987744 22 222 3334456777 89999999876321
Q ss_pred cchhhHHHHHHHHHHHH
Q 036029 146 WDNYNIGILFKEWRAAV 162 (359)
Q Consensus 146 ~~~~~~~~ll~~l~~~l 162 (359)
.|.+.+.++++.+++..
T Consensus 140 ~d~~~~~~i~~~v~~~~ 156 (310)
T PRK02506 140 YDFETTEQILEEVFTYF 156 (310)
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 24455666777776654
No 95
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=56.17 E-value=36 Score=26.70 Aligned_cols=74 Identities=12% Similarity=0.128 Sum_probs=51.0
Q ss_pred CceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHhh
Q 036029 88 SITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEAR 167 (359)
Q Consensus 88 ~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~~ 167 (359)
+..=++-.|+.-+ .=.|.. .|... ++=.+.+.++|++.|++.--+++++... .+.+.|++.++++-+.++.-++
T Consensus 53 GaDGV~v~GC~~g--eCHy~~--GN~ka-~rR~~~lke~l~elgie~eRv~~~wiSa-~E~ekf~e~~~efv~~i~~lGp 126 (132)
T COG1908 53 GADGVLVAGCKIG--ECHYIS--GNYKA-KRRMELLKELLKELGIEPERVRVLWISA-AEGEKFAETINEFVERIKELGP 126 (132)
T ss_pred CCCeEEEeccccc--ceeeec--cchHH-HHHHHHHHHHHHHhCCCcceEEEEEEeh-hhHHHHHHHHHHHHHHHHHhCC
Confidence 5665666676543 122222 22211 2334567778889999999999988875 8899999999999999987654
No 96
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=55.86 E-value=2.6e+02 Score=29.14 Aligned_cols=125 Identities=10% Similarity=-0.013 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHc-CcceEEEEeeecCC-------------------------Cc-----------chhhHHHHHHHHH
Q 036029 117 KSFIDSSIKIARLY-GFQGLDLSWSWANT-------------------------SW-----------DNYNIGILFKEWR 159 (359)
Q Consensus 117 ~~f~~~i~~~l~~~-~~DGidiD~E~~~~-------------------------~~-----------~~~~~~~ll~~l~ 159 (359)
.+.|.+|-+=|..| .||||-+.-+-..+ .. ..+.+..|-.+|.
T Consensus 443 ~~~i~~iy~DLa~~~~~~GilfhDd~~l~d~ed~sp~a~~~y~~~gl~~~~~~~~~~~~~~~~w~~~k~~~l~~f~~~l~ 522 (672)
T PRK14581 443 RQRIIDIYRDMAYSAPIDGIIYHDDAVMSDFEDASPDAIRAYEKAGFPGSITTIRQDPEMMQRWTRYKSKYLIDFTNELT 522 (672)
T ss_pred HHHHHHHHHHHHhcCCCCeEEeccccccccccccCHHHHHHHHhcCCCccHHhHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688888888887 79999886542110 00 1234568888899
Q ss_pred HHHHHHhhcCCCCceEEE----EEEeecCCCcccccc--CHhHHhccccEEEeecccccCCCCCCCCCCCCcccccHHHH
Q 036029 160 AAVALEARNNSSQSQLIL----TARVAYSPYSTIGAY--SIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYG 233 (359)
Q Consensus 160 ~~l~~~~~~~~~~~~~~l----s~~~~~~~~~~~~~~--~~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl~~~~~~~ 233 (359)
+.++.... . ++.. -..+...|. ....| ++....+.-||+-+|+|-+... ...+.+. .++...
T Consensus 523 ~~v~~~~~---p--~~~tarniya~~~l~p~-~~~w~aQ~l~~~~~~yD~~a~mamp~me~----~~~~~~~--~w~~~l 590 (672)
T PRK14581 523 REVRDIRG---P--QVKSARNIFAMPILEPE-SEAWFAQNLDDFLANYDWVAPMAMPLMEK----VPLSESN--EWLAEL 590 (672)
T ss_pred HHHHhhcC---c--cceehhcccccccCChh-HHHHHHhHHHHHHhhcchhHHhhchhhhc----cccccHH--HHHHHH
Confidence 88876421 0 0111 111111221 11112 5667777889999999975432 1111111 345555
Q ss_pred HHHHHHCCCCCCceeeeccc
Q 036029 234 ITAWTDEGLSADKLVLGLPC 253 (359)
Q Consensus 234 ~~~~~~~g~~~~Kl~lGlp~ 253 (359)
++.+.+.-...+|+|+-|-.
T Consensus 591 ~~~v~~~~~~~~k~vfelQ~ 610 (672)
T PRK14581 591 VNKVAQRPGALEKTVFELQS 610 (672)
T ss_pred HHHHHhcCCcccceEEEeec
Confidence 55554433456899988854
No 97
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=54.46 E-value=35 Score=32.04 Aligned_cols=40 Identities=20% Similarity=0.484 Sum_probs=27.9
Q ss_pred CCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecC
Q 036029 87 PSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWAN 143 (359)
Q Consensus 87 ~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~ 143 (359)
....+.+.|+|.+ + +.|++ .+..+++.|+|||||+.-.|.
T Consensus 63 ~e~p~~vQl~g~~-------------p---~~~~~-aA~~~~~~g~d~IdlN~gCP~ 102 (333)
T PRK11815 63 EEHPVALQLGGSD-------------P---ADLAE-AAKLAEDWGYDEINLNVGCPS 102 (333)
T ss_pred CCCcEEEEEeCCC-------------H---HHHHH-HHHHHHhcCCCEEEEcCCCCH
Confidence 3567888888744 2 34443 455677889999999987664
No 98
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=53.45 E-value=44 Score=31.20 Aligned_cols=59 Identities=20% Similarity=0.301 Sum_probs=37.8
Q ss_pred CCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCC-----------cchhhHHHHH
Q 036029 87 PSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTS-----------WDNYNIGILF 155 (359)
Q Consensus 87 ~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~-----------~~~~~~~~ll 155 (359)
....+.+.|+|.+ + +.|+ ..+..+.++|+|+|||+.-.|... .+.+...++|
T Consensus 53 ~e~p~~vQl~g~~-------------p---~~~~-~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv 115 (318)
T TIGR00742 53 EESPVALQLGGSD-------------P---NDLA-KCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCV 115 (318)
T ss_pred CCCcEEEEEccCC-------------H---HHHH-HHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHH
Confidence 3566778888743 2 2333 345566778999999999766521 3444556667
Q ss_pred HHHHHHH
Q 036029 156 KEWRAAV 162 (359)
Q Consensus 156 ~~l~~~l 162 (359)
++++++.
T Consensus 116 ~av~~~~ 122 (318)
T TIGR00742 116 KAMQEAV 122 (318)
T ss_pred HHHHHHh
Confidence 7766665
No 99
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=52.81 E-value=54 Score=33.59 Aligned_cols=94 Identities=10% Similarity=0.127 Sum_probs=61.0
Q ss_pred chHHHHHHHHHHHhcCCCceEEEEEcCCCC---------------CC--------CcccccccC---ChhhHHHHHHHHH
Q 036029 71 DEKQFSNFTDTVKKKNPSITTLLSIGGGKN---------------PN--------YSTYSSMAS---NPSSRKSFIDSSI 124 (359)
Q Consensus 71 ~~~~~~~~~~~lk~~~~~~kvllsigg~~~---------------~~--------~~~~~~~~~---~~~~r~~f~~~i~ 124 (359)
.+..++.|++.+|+. ++-|+|-+==... +. ...|...+- ..+-|.-|++++.
T Consensus 212 tPedfk~fVD~aH~~--GIgViLD~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal 289 (628)
T COG0296 212 TPEDFKALVDAAHQA--GIGVILDWVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANAL 289 (628)
T ss_pred CHHHHHHHHHHHHHc--CCEEEEEecCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHH
Confidence 678899999999998 7999987611000 00 122333333 3467788999999
Q ss_pred HHHHHcCcceEEEEeeecC---------------CCcch--hhHHHHHHHHHHHHHHHh
Q 036029 125 KIARLYGFQGLDLSWSWAN---------------TSWDN--YNIGILFKEWRAAVALEA 166 (359)
Q Consensus 125 ~~l~~~~~DGidiD~E~~~---------------~~~~~--~~~~~ll~~l~~~l~~~~ 166 (359)
-||++|.+||+-+|=-... ....+ -.-+.|++++.+.+....
T Consensus 290 ~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~~~ 348 (628)
T COG0296 290 YWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHEEE 348 (628)
T ss_pred HHHHHhCCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhcccC
Confidence 9999999999988742110 01122 234578888888887653
No 100
>PRK01060 endonuclease IV; Provisional
Probab=52.77 E-value=27 Score=31.64 Aligned_cols=47 Identities=9% Similarity=-0.019 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHh
Q 036029 120 IDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEA 166 (359)
Q Consensus 120 ~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~ 166 (359)
+...++.+++.|||||+|..+.|..-.....-...++++++.+...+
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~g 60 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYG 60 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcC
Confidence 55688999999999999987655421111223446788888887765
No 101
>PRK14866 hypothetical protein; Provisional
Probab=52.26 E-value=36 Score=33.30 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=40.6
Q ss_pred CCceEEEEEcCCCCCCCcccc-----------cccCChhhHHHHH-H-HHHHHHHHcCcceEEEEeeecCCCcchhhHHH
Q 036029 87 PSITTLLSIGGGKNPNYSTYS-----------SMASNPSSRKSFI-D-SSIKIARLYGFQGLDLSWSWANTSWDNYNIGI 153 (359)
Q Consensus 87 ~~~kvllsigg~~~~~~~~~~-----------~~~~~~~~r~~f~-~-~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ 153 (359)
...++++.|||... ...|. .++.+-.. ..+- . .+.+.+++.+.|.+.|||....+ .+++.+..
T Consensus 183 ~~~~~~iG~GGgHY--apr~t~i~le~~~~~GHi~pky~l-~~l~~~~~i~~a~~~~~~~~a~iD~Ks~k~-~~r~~i~~ 258 (451)
T PRK14866 183 HTDRPLVGFGGGHY--APRQTRIVLETDWAFGHIAADWQL-GALGDPAVLRAAFEASGADAAYIDRKAMSS-GDRPRLEA 258 (451)
T ss_pred cCCCEEEEeCCCCc--chhHHHHhhcCCeeEEeeccccch-hccCcHHHHHHHHHhcCCCEEEEecCCCCH-HHHHHHHH
Confidence 46799999999876 33333 22221100 0000 1 33344445789999999987664 77777777
Q ss_pred HHHHH
Q 036029 154 LFKEW 158 (359)
Q Consensus 154 ll~~l 158 (359)
+++++
T Consensus 259 ~l~~l 263 (451)
T PRK14866 259 LLEEL 263 (451)
T ss_pred HHHHC
Confidence 76665
No 102
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=50.88 E-value=78 Score=32.83 Aligned_cols=129 Identities=10% Similarity=0.008 Sum_probs=69.8
Q ss_pred hhhHHHHHHHHHHHHHH-cCcceEEEEeeecCCC-------------------------c-----------chhhHHHHH
Q 036029 113 PSSRKSFIDSSIKIARL-YGFQGLDLSWSWANTS-------------------------W-----------DNYNIGILF 155 (359)
Q Consensus 113 ~~~r~~f~~~i~~~l~~-~~~DGidiD~E~~~~~-------------------------~-----------~~~~~~~ll 155 (359)
++.|+ +|.+|..-|.+ +.+|||-+|-+-..++ . ..+.+..|-
T Consensus 440 pe~r~-~i~~i~~dla~~~~~dGilf~Dd~~l~d~ed~s~~a~~~~~~~g~~~~~~~~~~~~~~~~~wt~~k~~~l~~f~ 518 (671)
T PRK14582 440 DRVRA-QVGMLYEDLAGHAAFDGILFHDDAVLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWTRFKSRALTDFT 518 (671)
T ss_pred HHHHH-HHHHHHHHHHHhCCCceEEecccccccccccCCHHHHHHHHHcCCCcchhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 44444 55555555554 6999999987533211 0 113456788
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEEEeecCCCc---ccccc--CHhHHhccccEEEeecccccCCCCCCCCCCCCcccccH
Q 036029 156 KEWRAAVALEARNNSSQSQLILTARVAYSPYS---TIGAY--SIDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFNT 230 (359)
Q Consensus 156 ~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~~~---~~~~~--~~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl~~~~ 230 (359)
.+|...++.... . .+...--+.+.+-. ....| ++....+.-||+-+|+.-+... ...+.+ . .++
T Consensus 519 ~~l~~~v~~~~~---~--~~~tarni~a~~~l~p~~e~w~aQ~l~~~~~~yD~~a~mampyme~----~~~~~~-~-~wl 587 (671)
T PRK14582 519 LELSARVKAIRG---P--QVKTARNIFALPVIQPESEAWFAQNLDDFLKSYDWTAPMAMPLMEG----VAEKSS-D-AWL 587 (671)
T ss_pred HHHHHHHHhhcC---c--cceeeccccccccCChhHHHHHHhHHHHHHhhcchhhhhcchhhhc----cCcccH-H-HHH
Confidence 888888876421 0 01111111111111 11112 4567777889999999655432 122211 1 355
Q ss_pred HHHHHHHHHCCCCCCceeeeccc
Q 036029 231 EYGITAWTDEGLSADKLVLGLPC 253 (359)
Q Consensus 231 ~~~~~~~~~~g~~~~Kl~lGlp~ 253 (359)
...++.+.+.-...+|+|+-|-.
T Consensus 588 ~~l~~~v~~~~~~~~k~vfelq~ 610 (671)
T PRK14582 588 IQLVNQVKNIPGALDKTIFELQA 610 (671)
T ss_pred HHHHHHHHhcCCcccceEEEeec
Confidence 66666655443456899998855
No 103
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=49.61 E-value=2.1e+02 Score=26.18 Aligned_cols=51 Identities=16% Similarity=0.014 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHcCcceEEEEeeecC----------CCcchhhHHHHHHHHHHHHHHHhh
Q 036029 117 KSFIDSSIKIARLYGFQGLDLSWSWAN----------TSWDNYNIGILFKEWRAAVALEAR 167 (359)
Q Consensus 117 ~~f~~~i~~~l~~~~~DGidiD~E~~~----------~~~~~~~~~~ll~~l~~~l~~~~~ 167 (359)
+..+.+-.+-|.+.|||||-||+-.+. ..........|+.++++..+..+.
T Consensus 125 kdii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~ 185 (300)
T COG2342 125 KDIIRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANP 185 (300)
T ss_pred HHHHHHHHHHHHHccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCC
Confidence 456667788888899999999984332 124456788999999999988764
No 104
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=48.52 E-value=65 Score=29.05 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=42.7
Q ss_pred cCccchHHHHHHHHHHHhcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecC
Q 036029 67 LSPSDEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWAN 143 (359)
Q Consensus 67 ~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~ 143 (359)
+....-+....+++.+|++ ++|+++.+-- . .|+-|.+.+.+++.+.|+||+=+|+-.|.
T Consensus 60 ~d~~~Fpdp~~~i~~l~~~--g~~~~~~~~P------~----------v~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 118 (265)
T cd06589 60 WDAGKFPNPKSMIDELHDN--GVKLVLWIDP------Y----------IREWWAEVVKKLLVSLGVDGFWTDMGEPS 118 (265)
T ss_pred cChhhCCCHHHHHHHHHHC--CCEEEEEeCh------h----------HHHHHHHHHHHhhccCCCCEEeccCCCCC
Confidence 3333344556788888886 7999998732 1 16777777777778899999999996554
No 105
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=48.00 E-value=2.1e+02 Score=25.74 Aligned_cols=74 Identities=8% Similarity=0.024 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHhcCCCceEEEEEc-CCCCCCCcccccccCChhhHHHHHHHHHHHHHH--------cCcceEEEEeeec
Q 036029 72 EKQFSNFTDTVKKKNPSITTLLSIG-GGKNPNYSTYSSMASNPSSRKSFIDSSIKIARL--------YGFQGLDLSWSWA 142 (359)
Q Consensus 72 ~~~~~~~~~~lk~~~~~~kvllsig-g~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~--------~~~DGidiD~E~~ 142 (359)
...+...+..|+ +.+++|++==|- +.. +..+ ....+.|-++..= +++|||-|| |-|
T Consensus 52 d~~Y~~~i~~L~-~~~nv~vlGYV~T~Yg---~R~~----------~~V~~dI~~Y~~W~~~~~~~~~~vdGIFfD-E~p 116 (253)
T PF12138_consen 52 DANYAAAIPRLN-SYANVRVLGYVHTSYG---SRPL----------SEVKADIDTYASWYGQSEDYGYRVDGIFFD-EAP 116 (253)
T ss_pred CHHHHHHHHHHH-hcCCCcEEEEEEcccc---CCCH----------HHHHHHHHHHhhccccccCCCcccceEEEe-cCC
Confidence 445555555564 456899883331 111 1111 2333344444433 689999999 655
Q ss_pred CCCcchhhHHHHHHHHHHHHHH
Q 036029 143 NTSWDNYNIGILFKEWRAAVAL 164 (359)
Q Consensus 143 ~~~~~~~~~~~ll~~l~~~l~~ 164 (359)
.+ . .....+++|....+.
T Consensus 117 ~~---~-~~~~y~~~l~~~vk~ 134 (253)
T PF12138_consen 117 ND---Y-ANLPYYQNLYNYVKS 134 (253)
T ss_pred Cc---H-HHHHHHHHHHHHHHh
Confidence 43 2 555666666666665
No 106
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=47.25 E-value=41 Score=30.44 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHH
Q 036029 120 IDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALE 165 (359)
Q Consensus 120 ~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~ 165 (359)
....++.+++.|||||+|....+........-..-+++++..+...
T Consensus 12 l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 57 (279)
T cd00019 12 LENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEG 57 (279)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHc
Confidence 3567889999999999998754432111111125677777777665
No 107
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=46.63 E-value=12 Score=29.03 Aligned_cols=17 Identities=24% Similarity=0.634 Sum_probs=13.2
Q ss_pred HHHHHCCCCCCceeeec
Q 036029 235 TAWTDEGLSADKLVLGL 251 (359)
Q Consensus 235 ~~~~~~g~~~~Kl~lGl 251 (359)
+.++++|||++.||||+
T Consensus 81 ~eLve~GVpk~dIVLgF 97 (111)
T PF08869_consen 81 EELVEAGVPKEDIVLGF 97 (111)
T ss_dssp HHHHHTT--GGGEEETT
T ss_pred HHHHHcCCCHHHEEEcc
Confidence 57789999999999996
No 108
>PF07999 RHSP: Retrotransposon hot spot protein; InterPro: IPR006518 These sequences are full-length and part-length members of the RHS (retrotransposon hot spot) family in Trypanosoma brucei and Trypanosoma cruzi. Members of this family are frequently interrupted by non-LTR retrotransposons inserted at exactly the same relative position.
Probab=46.42 E-value=1.4e+02 Score=29.32 Aligned_cols=101 Identities=17% Similarity=0.223 Sum_probs=66.4
Q ss_pred ccHHHHHHHHHHCC---CCCCceeeecccceeeeeecCCCCCCCCcccCCCCCCCCccccHHHHHHhhhhCCCCccEEEe
Q 036029 228 FNTEYGITAWTDEG---LSADKLVLGLPCYGYAWTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYN 304 (359)
Q Consensus 228 ~~~~~~~~~~~~~g---~~~~Kl~lGlp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d 304 (359)
+-++..++.|...+ -|.-.|++|-|--|.+|.+ |+.-.+++..+=. .. .+.+-=
T Consensus 106 ~iVk~~l~~W~~~~~~~~~~p~vlIGTPGIGKS~~~--------------------GS~LLyqLLHy~~-~~--L~vVaY 162 (439)
T PF07999_consen 106 HIVKRDLDRWLSGRGERDPRPFVLIGTPGIGKSFGT--------------------GSYLLYQLLHYDA-EK--LPVVAY 162 (439)
T ss_pred HHHHHHHHHHhccCCCCCCCceEEEecCCcCccccc--------------------hhhhhhhhhcCCh-hh--ccEEEE
Confidence 56899999998532 2455799999999988843 4444455444211 11 111111
Q ss_pred CCeeeeEEE--eCC----EEEEEcCHHHHHHHHHHHHHCCCcEEEEEEccCCC
Q 036029 305 STYVMNYCS--IGK----IWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYDH 351 (359)
Q Consensus 305 ~~~~~~y~~--~~~----~~i~ydd~~S~~~K~~~~~~~gl~Gv~iW~l~~Dd 351 (359)
-.....|++ ..+ ..+.|.+....-..++-....|..|..|.+++.+.
T Consensus 163 fv~~~aYif~k~~~~~~G~Vv~Y~~~~~a~~~i~~~~~~g~~GyiI~Dv~~~~ 215 (439)
T PF07999_consen 163 FVGGEAYIFHKTGGGEAGRVVFYKDQEAAVSVINEMSSRGVKGYIIYDVAKKG 215 (439)
T ss_pred EEeceEEEEEeccCCcCceEEEecCchHHHHHHHHHHhhCceEEEEEeccccc
Confidence 111255665 223 67889998888888887778999999999999886
No 109
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=45.96 E-value=1.8e+02 Score=29.11 Aligned_cols=130 Identities=12% Similarity=0.098 Sum_probs=71.2
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCC----CCccc---cccc--CChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCC-
Q 036029 76 SNFTDTVKKKNPSITTLLSIGGGKNP----NYSTY---SSMA--SNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTS- 145 (359)
Q Consensus 76 ~~~~~~lk~~~~~~kvllsigg~~~~----~~~~~---~~~~--~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~- 145 (359)
..+++.+++.+|++|++.|- |+-| .+..+ ..+- ...+-++.+++=++++++.|.=-||+|+---+.++
T Consensus 156 ip~ik~a~~~~~~lki~aSp--WSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP 233 (496)
T PF02055_consen 156 IPLIKEALAINPNLKIFASP--WSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEP 233 (496)
T ss_dssp HHHHHHHHHHHTT-EEEEEE--S---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSC
T ss_pred HHHHHHHHHhCCCcEEEEec--CCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCC
Confidence 46667777888899999886 3320 01111 1111 12456789999999999999999999987433321
Q ss_pred --------------cchhhHHHHHHH-HHHHHHHHhhcCCCCceEEEEEEeec--CCCccccccCHhHHhccccEEEeec
Q 036029 146 --------------WDNYNIGILFKE-WRAAVALEARNNSSQSQLILTARVAY--SPYSTIGAYSIDSIRQYLNWVHVIT 208 (359)
Q Consensus 146 --------------~~~~~~~~ll~~-l~~~l~~~~~~~~~~~~~~ls~~~~~--~~~~~~~~~~~~~l~~~vD~i~vm~ 208 (359)
-..+....||+. |+-+|+..+. +..-.++...-.. .+.....-+.-++..+++|-+-+..
T Consensus 234 ~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~---g~d~kI~~~D~n~~~~~~~~~~il~d~~A~~yv~GiA~Hw 310 (496)
T PF02055_consen 234 DNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGL---GKDVKILIYDHNRDNLPDYADTILNDPEAAKYVDGIAFHW 310 (496)
T ss_dssp CGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT----TTSEEEEEEEEGGGTTHHHHHHHTSHHHHTTEEEEEEEE
T ss_pred CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCC---CCceEEEEEecCCcccchhhhhhhcChhhHhheeEEEEEC
Confidence 123456789987 9999987632 1111233332110 0111111122245567888888888
Q ss_pred cc
Q 036029 209 AE 210 (359)
Q Consensus 209 yd 210 (359)
|.
T Consensus 311 Y~ 312 (496)
T PF02055_consen 311 YG 312 (496)
T ss_dssp TT
T ss_pred CC
Confidence 74
No 110
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=45.57 E-value=53 Score=30.51 Aligned_cols=65 Identities=20% Similarity=0.246 Sum_probs=37.0
Q ss_pred HHhcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCC-----------Ccchhh
Q 036029 82 VKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANT-----------SWDNYN 150 (359)
Q Consensus 82 lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~-----------~~~~~~ 150 (359)
+.......++.+-|+|.+ + ......+..+...++|||||+.--|.. -.+.+.
T Consensus 47 ~~~~~~~~p~~~Ql~g~~-------------~----~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~ 109 (309)
T PF01207_consen 47 LPFLPNERPLIVQLFGND-------------P----EDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDL 109 (309)
T ss_dssp S-GCC-T-TEEEEEE-S--------------H----HHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHH
T ss_pred ccccccccceeEEEeecc-------------H----HHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHH
Confidence 333333467888888743 2 333444556777899999999987752 146677
Q ss_pred HHHHHHHHHHHHH
Q 036029 151 IGILFKEWRAAVA 163 (359)
Q Consensus 151 ~~~ll~~l~~~l~ 163 (359)
..++|+++++.++
T Consensus 110 ~~~iv~~~~~~~~ 122 (309)
T PF01207_consen 110 LAEIVKAVRKAVP 122 (309)
T ss_dssp HHHHHHHHHHH-S
T ss_pred hhHHHHhhhcccc
Confidence 7888888888775
No 111
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=45.56 E-value=1.6e+02 Score=27.12 Aligned_cols=59 Identities=19% Similarity=0.119 Sum_probs=37.0
Q ss_pred CCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHc--CcceEEEEeeecCCC------cchhhHHHHHHHH
Q 036029 87 PSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLY--GFQGLDLSWSWANTS------WDNYNIGILFKEW 158 (359)
Q Consensus 87 ~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~--~~DGidiD~E~~~~~------~~~~~~~~ll~~l 158 (359)
++..++++|+|. . +.+++.+..+.... +.|+|||++-.|... .+.+.+.++++.+
T Consensus 90 ~~~pvivsi~g~-~----------------~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v 152 (294)
T cd04741 90 SAKPFFISVTGS-A----------------EDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAV 152 (294)
T ss_pred cCCeEEEECCCC-H----------------HHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHH
Confidence 467788999763 1 34444444433333 689999999877531 2455666677777
Q ss_pred HHHH
Q 036029 159 RAAV 162 (359)
Q Consensus 159 ~~~l 162 (359)
++..
T Consensus 153 ~~~~ 156 (294)
T cd04741 153 KAAY 156 (294)
T ss_pred HHhc
Confidence 6665
No 112
>PLN02411 12-oxophytodienoate reductase
Probab=44.57 E-value=52 Score=31.70 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=26.5
Q ss_pred EEEEeEEEeCCCcE----E-ecCccchHHHHHHHHHHHhcCCCceEEEEE
Q 036029 51 LMCGFADVNSTSYE----L-SLSPSDEKQFSNFTDTVKKKNPSITTLLSI 95 (359)
Q Consensus 51 ii~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~lk~~~~~~kvllsi 95 (359)
||-....+.+.+.. + ...+..-+.++++++.+|++ +.|+++-|
T Consensus 60 IIte~~~V~~~g~~~~~~~gi~~d~~i~~~~~l~~avH~~--G~~i~~QL 107 (391)
T PLN02411 60 LISEGTLISPTAPGFPHVPGIYSDEQVEAWKKVVDAVHAK--GSIIFCQL 107 (391)
T ss_pred EEeCceEECcccCcCCCCCccCCHHHHHHHHHHHHHHHhc--CCEEEEec
Confidence 45555555554311 1 12344567788888888887 78888777
No 113
>PLN02923 xylose isomerase
Probab=42.71 E-value=3.3e+02 Score=26.56 Aligned_cols=40 Identities=10% Similarity=-0.024 Sum_probs=27.5
Q ss_pred cchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeecCCCccccc-cC
Q 036029 146 WDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGA-YS 193 (359)
Q Consensus 146 ~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~~~~~~~-~~ 193 (359)
...+++.+|++.+.+.-+..+ +...+.+.+.|..+... ||
T Consensus 246 ~e~d~~a~fl~ma~dY~~~iG--------f~g~flIEPKP~EPtkHqYd 286 (478)
T PLN02923 246 RELDHLARFLEAAVAYKKKIG--------FNGTLLIEPKPQEPTKHQYD 286 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcC--------CCceEEecCCCCCCCCCccC
Confidence 456788888888888776654 67788887777644333 54
No 114
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=42.35 E-value=2.2e+02 Score=26.77 Aligned_cols=66 Identities=17% Similarity=0.084 Sum_probs=43.5
Q ss_pred CCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCC-----CcchhhHHHHHHHHHHH
Q 036029 87 PSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANT-----SWDNYNIGILFKEWRAA 161 (359)
Q Consensus 87 ~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~-----~~~~~~~~~ll~~l~~~ 161 (359)
.++.+++||+|... ......-+.|+..+..+ .. +.|+++|++-.|.. .++.+.+.++++++|+.
T Consensus 136 ~~~pvivsI~~~~~---------~~~~~~~~d~~~~~~~~-~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~ 204 (344)
T PRK05286 136 RGIPLGINIGKNKD---------TPLEDAVDDYLICLEKL-YP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEA 204 (344)
T ss_pred CCCcEEEEEecCCC---------CCcccCHHHHHHHHHHH-Hh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHH
Confidence 46889999987421 01122335566555544 33 48999999976643 24566788888999888
Q ss_pred HH
Q 036029 162 VA 163 (359)
Q Consensus 162 l~ 163 (359)
.+
T Consensus 205 ~~ 206 (344)
T PRK05286 205 QA 206 (344)
T ss_pred Hh
Confidence 86
No 115
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=41.85 E-value=1.6e+02 Score=28.43 Aligned_cols=120 Identities=10% Similarity=0.074 Sum_probs=64.2
Q ss_pred chHHHHHHHHHHHhcCCCceEEEEEcCCCC-CCCcc------c----------------ccccCChhhHHHHHHHHHHHH
Q 036029 71 DEKQFSNFTDTVKKKNPSITTLLSIGGGKN-PNYST------Y----------------SSMASNPSSRKSFIDSSIKIA 127 (359)
Q Consensus 71 ~~~~~~~~~~~lk~~~~~~kvllsigg~~~-~~~~~------~----------------~~~~~~~~~r~~f~~~i~~~l 127 (359)
-+..+..+++.+|++ |+|.-|-+.-..- +++.. | .-=+++++.|+-+.+.+.+++
T Consensus 102 FP~Gl~~l~~~i~~~--Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll 179 (394)
T PF02065_consen 102 FPNGLKPLADYIHSL--GMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLL 179 (394)
T ss_dssp STTHHHHHHHHHHHT--T-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHC--CCeEEEEeccccccchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHH
Confidence 345688888888887 6777766621100 01110 1 111346778888889999999
Q ss_pred HHcCcceEEEEeeecCC----Cc---chhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeecCCCccccccCHhHHhcc
Q 036029 128 RLYGFQGLDLSWSWANT----SW---DNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQY 200 (359)
Q Consensus 128 ~~~~~DGidiD~E~~~~----~~---~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~~ 200 (359)
+++|+|.|-+|+-.... +. ....++.-+-+|.++++++.+ ++.+..+.. ...+.|+ .+..+
T Consensus 180 ~~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P------~v~iE~Css-----GG~R~D~-g~l~~ 247 (394)
T PF02065_consen 180 REWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFP------DVLIENCSS-----GGGRFDP-GMLYY 247 (394)
T ss_dssp HHTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTT------TSEEEE-BT-----TBTTTSH-HHHCC
T ss_pred HhcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCC------CcEEEeccC-----CCCcccc-chhee
Confidence 99999999999964321 11 122444433334444444332 356766643 2334553 45555
Q ss_pred ccEE
Q 036029 201 LNWV 204 (359)
Q Consensus 201 vD~i 204 (359)
.+.+
T Consensus 248 ~~~~ 251 (394)
T PF02065_consen 248 TPQS 251 (394)
T ss_dssp SSEE
T ss_pred cccc
Confidence 5544
No 116
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=41.37 E-value=89 Score=24.98 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEcCCCCCCCcccccccC-ChhhHHHHHHHHHHHHHHcCcceEEE
Q 036029 73 KQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMAS-NPSSRKSFIDSSIKIARLYGFQGLDL 137 (359)
Q Consensus 73 ~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~-~~~~r~~f~~~i~~~l~~~~~DGidi 137 (359)
..+.-+.+.+++. ++++++-|--- +..|..-+. +.+.|+.+.+.|...++++||.=+|+
T Consensus 36 ~Dl~l~L~~~k~~--g~~~lfVi~Pv----Ng~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~ 95 (130)
T PF04914_consen 36 DDLQLLLDVCKEL--GIDVLFVIQPV----NGKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADF 95 (130)
T ss_dssp HHHHHHHHHHHHT--T-EEEEEE--------HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-
T ss_pred HHHHHHHHHHHHc--CCceEEEecCC----cHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 4455566667776 79998777532 334443333 78999999999999999999954444
No 117
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=41.06 E-value=82 Score=29.29 Aligned_cols=70 Identities=11% Similarity=0.030 Sum_probs=46.4
Q ss_pred chHHHHHHHHHHHhcCCCceEEEEEcCCCCCCC---------ccc--------------------ccccCChhhHHHHHH
Q 036029 71 DEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNY---------STY--------------------SSMASNPSSRKSFID 121 (359)
Q Consensus 71 ~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~---------~~~--------------------~~~~~~~~~r~~f~~ 121 (359)
.-+....+++.||++ ++|+++.|--.-..++ ..| -.=+.|++.|+=|.+
T Consensus 71 ~FPdp~~mi~~L~~~--g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 148 (317)
T cd06599 71 RFPDPAAFVAKFHER--GIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKE 148 (317)
T ss_pred cCCCHHHHHHHHHHC--CCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHH
Confidence 334456788888887 7999987632110000 000 011247888988888
Q ss_pred HHHHHHHHcCcceEEEEeeec
Q 036029 122 SSIKIARLYGFQGLDLSWSWA 142 (359)
Q Consensus 122 ~i~~~l~~~~~DGidiD~E~~ 142 (359)
.+.+.+.+.|+||.=+|.-++
T Consensus 149 ~~~~~~~~~Gvdg~w~D~~E~ 169 (317)
T cd06599 149 GVKEALLDLGIDSTWNDNNEY 169 (317)
T ss_pred HHHHHHhcCCCcEEEecCCCC
Confidence 888999999999999998544
No 118
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=40.90 E-value=1e+02 Score=28.93 Aligned_cols=49 Identities=8% Similarity=0.104 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHcCcceEEEEeeecCC----------CcchhhHHHHHHHHHHHHHHH
Q 036029 117 KSFIDSSIKIARLYGFQGLDLSWSWANT----------SWDNYNIGILFKEWRAAVALE 165 (359)
Q Consensus 117 ~~f~~~i~~~l~~~~~DGidiD~E~~~~----------~~~~~~~~~ll~~l~~~l~~~ 165 (359)
..|++.++..+.+-|+.||.++|..-.. ..+...+..++..+++.+...
T Consensus 90 s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~~~~r 148 (345)
T COG0429 90 SPYARGLMRALSRRGWLVVVFHFRGCSGEANTSPRLYHSGETEDIRFFLDWLKARFPPR 148 (345)
T ss_pred CHHHHHHHHHHHhcCCeEEEEecccccCCcccCcceecccchhHHHHHHHHHHHhCCCC
Confidence 3699999999999999999999986542 245578888888888866544
No 119
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=39.15 E-value=2.3e+02 Score=23.63 Aligned_cols=109 Identities=9% Similarity=0.056 Sum_probs=58.5
Q ss_pred CCCcEEEEEeEEEeCCCcEE-ec-----CccchHHHHHHHHHHHhcCCCceEEEEEcCCCCCCCcccccccCChhhHHHH
Q 036029 46 ALFTHLMCGFADVNSTSYEL-SL-----SPSDEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSF 119 (359)
Q Consensus 46 ~~~Thii~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f 119 (359)
-.|.+||+-+........-. .. .......+..+.+.+.+. |+||+++++-. ...|.. .+.+....+
T Consensus 32 ~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~--Gmkv~~Gl~~~----~~~w~~--~~~~~~~~~ 103 (166)
T PF14488_consen 32 IGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKY--GMKVFVGLYFD----PDYWDQ--GDLDWEAER 103 (166)
T ss_pred cCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHc--CCEEEEeCCCC----chhhhc--cCHHHHHHH
Confidence 35888888876554321100 00 011223445555444444 89999999852 234442 555444444
Q ss_pred HHHHHHHHHH-cC----cceEEEEeeecCCCcchhhHHHHHHHHHHHHHHH
Q 036029 120 IDSSIKIARL-YG----FQGLDLSWSWANTSWDNYNIGILFKEWRAAVALE 165 (359)
Q Consensus 120 ~~~i~~~l~~-~~----~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~ 165 (359)
.+.+++.|.+ || |.|--|-.|..... .+-..+++.|...++.-
T Consensus 104 ~~~v~~el~~~yg~h~sf~GWYip~E~~~~~---~~~~~~~~~l~~~lk~~ 151 (166)
T PF14488_consen 104 NKQVADELWQRYGHHPSFYGWYIPYEIDDYN---WNAPERFALLGKYLKQI 151 (166)
T ss_pred HHHHHHHHHHHHcCCCCCceEEEecccCCcc---cchHHHHHHHHHHHHHh
Confidence 4444444433 33 99999999854321 22255666666666554
No 120
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=38.78 E-value=1.4e+02 Score=28.13 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=27.6
Q ss_pred cCChhhHHHHHHHHHHHHHHcCcceEEEEeeecC
Q 036029 110 ASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWAN 143 (359)
Q Consensus 110 ~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~ 143 (359)
..|++.|+=+.+.+.+++.+.|.||+-+|+-.|.
T Consensus 134 ftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep~ 167 (339)
T cd06602 134 FLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEPS 167 (339)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCCc
Confidence 4578888888788878888899999999986553
No 121
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=38.18 E-value=61 Score=34.30 Aligned_cols=46 Identities=11% Similarity=0.164 Sum_probs=26.7
Q ss_pred CcEEEEEeEEEeCCCcEE------ecCccchHHHHHHHHHHHhcCCCceEEEEE
Q 036029 48 FTHLMCGFADVNSTSYEL------SLSPSDEKQFSNFTDTVKKKNPSITTLLSI 95 (359)
Q Consensus 48 ~Thii~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~lk~~~~~~kvllsi 95 (359)
+.-|+.....+.+.+ .. ...+..-+.++++++.+|++. +.|+.+-|
T Consensus 445 ~glii~e~~~v~~~g-~~~~~~~~~~~d~~i~~~~~~~~~vh~~g-g~~i~~QL 496 (765)
T PRK08255 445 AGLVMTEMTCVSPEG-RITPGCPGLYNDEQEAAWKRIVDFVHANS-DAKIGIQL 496 (765)
T ss_pred CcEEEECCeEECCCc-CCCCCCCccCCHHHHHHHHHHHHHHHhcC-CceEEEEc
Confidence 444555555566554 21 123334567788888787752 36777766
No 122
>PRK09936 hypothetical protein; Provisional
Probab=37.84 E-value=3.3e+02 Score=25.10 Aligned_cols=107 Identities=6% Similarity=0.107 Sum_probs=60.4
Q ss_pred CCCcEEEEEeEEEeCCCcEEecCccchHHHHHHHHHHHhcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHH----
Q 036029 46 ALFTHLMCGFADVNSTSYELSLSPSDEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFID---- 121 (359)
Q Consensus 46 ~~~Thii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~---- 121 (359)
..|.++|+-+-..... .+... +.-+....+.++++ ++||.+.+= . +.+.|..+..|....+.|.+
T Consensus 50 ~G~~tLivQWt~yG~~----~fg~~-~g~La~~l~~A~~~--Gl~v~vGL~--~--Dp~y~q~~~~d~~~~~~yl~~~l~ 118 (296)
T PRK09936 50 QGFDTLVVQWTRYGDA----DFGGQ-RGWLAKRLAAAQQA--GLKLVVGLY--A--DPEFFMHQKQDGAALESYLNRQLG 118 (296)
T ss_pred cCCcEEEEEeeeccCC----Ccccc-hHHHHHHHHHHHHc--CCEEEEccc--C--ChHHHHHHhcCchhHHHHHHHHHH
Confidence 4699999998776332 22222 23333333445555 899988774 2 46778777657655554433
Q ss_pred ----HHHHHHHHcCc--ceEEEEeeecC----CCcchhhHHHHHHHHHHHHH
Q 036029 122 ----SSIKIARLYGF--QGLDLSWSWAN----TSWDNYNIGILFKEWRAAVA 163 (359)
Q Consensus 122 ----~i~~~l~~~~~--DGidiD~E~~~----~~~~~~~~~~ll~~l~~~l~ 163 (359)
....+-.+.++ +|--|-.|--. ++..++.+...|+.+...++
T Consensus 119 ~~~~qa~~~~~~~~~~v~GWYiP~ElDd~~W~~~~rR~~L~~~L~~~~~~l~ 170 (296)
T PRK09936 119 ASLQQARLWSAAWGVPVDGWYLPAELDDLNWRDEARRQPLLTWLNAAQRLID 170 (296)
T ss_pred HHHHHHHHHHhccCCCCCeEEeeeccchhcccCHHHHHHHHHHHHHHHHhCC
Confidence 33444455566 88877776321 12334444455555555554
No 123
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=37.59 E-value=67 Score=23.45 Aligned_cols=73 Identities=12% Similarity=0.077 Sum_probs=38.6
Q ss_pred HHHHcCcceEEEEeeecCC--------------CcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeecCCCccccc
Q 036029 126 IARLYGFQGLDLSWSWANT--------------SWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGA 191 (359)
Q Consensus 126 ~l~~~~~DGidiD~E~~~~--------------~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~~~~~~~ 191 (359)
++.++|.|.--+-||--.. ....+.+..+++++...+++..+ ...||+..... ..
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP------~~pvt~g~~~~-----~~ 69 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDP------SQPVTSGFWGG-----DW 69 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-T------TS-EE--B--S------T
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCC------CCcEEeecccC-----CH
Confidence 3567777777777863221 11356788999999999988653 13455543221 11
Q ss_pred cCHhHHh-ccccEEEeecc
Q 036029 192 YSIDSIR-QYLNWVHVITA 209 (359)
Q Consensus 192 ~~~~~l~-~~vD~i~vm~y 209 (359)
..+..+. ..+|++.+..|
T Consensus 70 ~~~~~~~~~~~DvisfH~Y 88 (88)
T PF12876_consen 70 EDLEQLQAENLDVISFHPY 88 (88)
T ss_dssp THHHHS--TT-SSEEB-EE
T ss_pred HHHHHhchhcCCEEeeecC
Confidence 1234555 78898877665
No 124
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=37.29 E-value=2.4e+02 Score=25.79 Aligned_cols=58 Identities=12% Similarity=0.056 Sum_probs=35.8
Q ss_pred CceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHc--CcceEEEEeeecCCC-------cchhhHHHHHHHH
Q 036029 88 SITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLY--GFQGLDLSWSWANTS-------WDNYNIGILFKEW 158 (359)
Q Consensus 88 ~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~--~~DGidiD~E~~~~~-------~~~~~~~~ll~~l 158 (359)
+..++++|.|.+ + +.+ ..+++.+++. ++|+|||++-.|... .+.+...++++++
T Consensus 90 ~~pl~~qi~g~~-------------~---~~~-~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~v 152 (300)
T TIGR01037 90 PTPLIASVYGSS-------------V---EEF-AEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAV 152 (300)
T ss_pred CCcEEEEeecCC-------------H---HHH-HHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHH
Confidence 467899997633 1 223 3445555554 389999998776532 2445556666666
Q ss_pred HHHH
Q 036029 159 RAAV 162 (359)
Q Consensus 159 ~~~l 162 (359)
|+..
T Consensus 153 r~~~ 156 (300)
T TIGR01037 153 KDKT 156 (300)
T ss_pred HHhc
Confidence 6654
No 125
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=37.12 E-value=1.8e+02 Score=32.74 Aligned_cols=87 Identities=17% Similarity=0.161 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHhcCCCceEEEEEcC----CCC-----------CCCccc-------------c-----cccCChhhHHH
Q 036029 72 EKQFSNFTDTVKKKNPSITTLLSIGG----GKN-----------PNYSTY-------------S-----SMASNPSSRKS 118 (359)
Q Consensus 72 ~~~~~~~~~~lk~~~~~~kvllsigg----~~~-----------~~~~~~-------------~-----~~~~~~~~r~~ 118 (359)
...++.+++.+|++ +++|+|-+-= ... .++..+ . .-+.++..|+-
T Consensus 246 ~~efk~lV~~~H~~--GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~ 323 (1221)
T PRK14510 246 EEEFAQAIKEAQSA--GIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRL 323 (1221)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHH
Confidence 45688888888887 8999988611 000 000000 0 11225667777
Q ss_pred HHHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHH
Q 036029 119 FIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALE 165 (359)
Q Consensus 119 f~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~ 165 (359)
.++++.-|++ +|.||.-+|.-......+ ..|+++++..++..
T Consensus 324 i~d~lr~Wv~-~gVDGfRfDla~~l~r~~----~~f~~~~~~~l~ai 365 (1221)
T PRK14510 324 PMDVLRSWAK-RGVDGFRLDLADELAREP----DGFIDEFRQFLKAM 365 (1221)
T ss_pred HHHHHHHHHH-hCCCEEEEechhhhccCc----cchHHHHHHHHHHh
Confidence 7888888998 999999999754332111 23555555555543
No 126
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=36.36 E-value=3.1e+02 Score=24.37 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeee
Q 036029 74 QFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSW 141 (359)
Q Consensus 74 ~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~ 141 (359)
....++..+++...+.++++++--... ...+ -.+.+.|.++. ...+...+.|=|||.++.
T Consensus 48 ~~~~~i~~l~~~~~~~p~I~T~Rt~~E--GG~~---~~~~~~~~~ll---~~~~~~~~~d~vDiE~~~ 107 (238)
T PRK13575 48 QLAEMITKLKVLQDSFKLLVTYRTKLQ--GGYG---QFTNDLYLNLL---SDLANINGIDMIDIEWQA 107 (238)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCChhh--CCCC---CCCHHHHHHHH---HHHHHhCCCCEEEEEccc
Confidence 344555566665556899999842110 0111 11344444433 344455567888888764
No 127
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=35.61 E-value=1.1e+02 Score=28.55 Aligned_cols=31 Identities=19% Similarity=0.072 Sum_probs=23.5
Q ss_pred CChhhHHHHHHHHHHHHHHcCcceEEEEeeec
Q 036029 111 SNPSSRKSFIDSSIKIARLYGFQGLDLSWSWA 142 (359)
Q Consensus 111 ~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~ 142 (359)
.|++.|+=|.+.+.. +.+.|+||+=+|+-+|
T Consensus 135 tnp~a~~w~~~~~~~-~~~~Gvdg~w~D~~Ep 165 (317)
T cd06598 135 FDPAAQAWFHDNYKK-LIDQGVTGWWGDLGEP 165 (317)
T ss_pred CCHHHHHHHHHHHHH-hhhCCccEEEecCCCc
Confidence 478888777666555 5788999999999544
No 128
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=35.47 E-value=3.3e+02 Score=24.38 Aligned_cols=57 Identities=14% Similarity=0.058 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcC-cceEEEEeee
Q 036029 76 SNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYG-FQGLDLSWSW 141 (359)
Q Consensus 76 ~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~-~DGidiD~E~ 141 (359)
......+++..+++++++++-.... ...| ..+.+.|.++. ..+-+.+ .|-|||++..
T Consensus 62 ~~~~~~l~~~~~~~PiI~T~R~~~e--GG~~---~~~~~~~~~ll----~~~~~~~~~d~vDiEl~~ 119 (253)
T PRK02412 62 LAAAPAIREKFAGKPLLFTFRTAKE--GGEI---ALSDEEYLALI----KAVIKSGLPDYIDVELFS 119 (253)
T ss_pred HHHHHHHHHhcCCCcEEEEECChhh--CCCC---CCCHHHHHHHH----HHHHhcCCCCEEEEeccC
Confidence 3344456665567899999953221 1111 12334443333 3334556 7999998753
No 129
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=34.83 E-value=1.8e+02 Score=26.66 Aligned_cols=75 Identities=11% Similarity=0.106 Sum_probs=49.3
Q ss_pred ecCccchHHHHHHHHHHHhcCCCceEEEEEcCCC--CCCCc-----------------ccccccCChhhHHHHHHHHHHH
Q 036029 66 SLSPSDEKQFSNFTDTVKKKNPSITTLLSIGGGK--NPNYS-----------------TYSSMASNPSSRKSFIDSSIKI 126 (359)
Q Consensus 66 ~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~--~~~~~-----------------~~~~~~~~~~~r~~f~~~i~~~ 126 (359)
.+.+..-+....+++.||++ ++|+++.+--.. ....+ ...--..+++.++-|.+.+.+.
T Consensus 67 t~d~~~FPdp~~mi~~Lh~~--G~k~v~~v~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~ 144 (292)
T cd06595 67 SWNRKLFPDPEKLLQDLHDR--GLKVTLNLHPADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRP 144 (292)
T ss_pred EEChhcCCCHHHHHHHHHHC--CCEEEEEeCCCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHH
Confidence 34433334556788888887 799998773211 00000 0111234778888899999999
Q ss_pred HHHcCcceEEEEeeec
Q 036029 127 ARLYGFQGLDLSWSWA 142 (359)
Q Consensus 127 l~~~~~DGidiD~E~~ 142 (359)
+...|+||+=+|+-.+
T Consensus 145 ~~~~Gidg~W~D~~E~ 160 (292)
T cd06595 145 LEKQGVDFWWLDWQQG 160 (292)
T ss_pred HHhcCCcEEEecCCCC
Confidence 9999999999998444
No 130
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=34.24 E-value=1.1e+02 Score=27.61 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEcC
Q 036029 73 KQFSNFTDTVKKKNPSITTLLSIGG 97 (359)
Q Consensus 73 ~~~~~~~~~lk~~~~~~kvllsigg 97 (359)
..+..+++.+++.||.+||+++|.-
T Consensus 152 ~~l~~~~~~l~~~nP~~kiilTVSP 176 (251)
T PF08885_consen 152 EDLEAIIDLLRSINPDIKIILTVSP 176 (251)
T ss_pred HHHHHHHHHHHhhCCCceEEEEecc
Confidence 3456777789999999999999964
No 131
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=34.11 E-value=72 Score=21.32 Aligned_cols=41 Identities=12% Similarity=-0.010 Sum_probs=21.0
Q ss_pred HHHHHHHHHcCcceE-EEEeeecCCCcchhhHHHHHHHHHHHH
Q 036029 121 DSSIKIARLYGFQGL-DLSWSWANTSWDNYNIGILFKEWRAAV 162 (359)
Q Consensus 121 ~~i~~~l~~~~~DGi-diD~E~~~~~~~~~~~~~ll~~l~~~l 162 (359)
..+++.|++.|+||. .|.||.+.- +....+..=++-||..+
T Consensus 3 ~~i~~~L~~~GYdG~~siE~ED~~~-~~~~G~~~a~~~lr~~l 44 (55)
T PF07582_consen 3 KRIFSALREIGYDGWLSIEHEDALM-DPEEGAREAAAFLRKLL 44 (55)
T ss_dssp HHHHHHHHHTT--SEEEE---STTT-SHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHcCCCceEEEEeecCCC-CHHHHHHHHHHHHHHhc
Confidence 357889999999995 677775542 33344444444444444
No 132
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=33.82 E-value=2.3e+02 Score=24.97 Aligned_cols=65 Identities=11% Similarity=0.170 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHHhcCCCceEEEEEcCCCCCCCc-----cccccc----CChhhHHHHHHHHHHHHHHcCcceEEE
Q 036029 71 DEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYS-----TYSSMA----SNPSSRKSFIDSSIKIARLYGFQGLDL 137 (359)
Q Consensus 71 ~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~-----~~~~~~----~~~~~r~~f~~~i~~~l~~~~~DGidi 137 (359)
-...++.+++.+|+..|.++|++---+--+ .+ .....+ +..+.-..+++.+++..++-|+++||+
T Consensus 98 y~dNlr~iv~~lks~~~~~riIlitPpp~d--e~~~~~~~~e~~~~~~~RtNe~~~~Ya~ac~~la~e~~l~~vdl 171 (245)
T KOG3035|consen 98 YKDNLRKIVSHLKSLSPETRIILITPPPVD--EEAWEKQEQEPYVLGPERTNETVGTYAKACANLAQEIGLYVVDL 171 (245)
T ss_pred HHHHHHHHHHHhhccCCcceEEEecCCCcC--HHHHHHHhccchhccchhhhhHHHHHHHHHHHHHHHhCCeeeeH
Confidence 445667888888888888888765444332 11 111112 233455678999999999999999999
No 133
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=33.70 E-value=77 Score=28.61 Aligned_cols=47 Identities=11% Similarity=0.003 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCcceEEEEeeecCCCcch-hhHHHHHHHHHHHHHHHhh
Q 036029 121 DSSIKIARLYGFQGLDLSWSWANTSWDN-YNIGILFKEWRAAVALEAR 167 (359)
Q Consensus 121 ~~i~~~l~~~~~DGidiD~E~~~~~~~~-~~~~~ll~~l~~~l~~~~~ 167 (359)
..+++.+++.|||||+|....+...-+. .....-++++++.+.+.+.
T Consensus 19 ~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 66 (279)
T TIGR00542 19 LERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGV 66 (279)
T ss_pred HHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCC
Confidence 4556888999999999975432110011 1125668889999988763
No 134
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=33.69 E-value=2.9e+02 Score=25.78 Aligned_cols=58 Identities=17% Similarity=0.086 Sum_probs=33.8
Q ss_pred CceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCC-Ccc-----hhhHHHHHHHHHHH
Q 036029 88 SITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANT-SWD-----NYNIGILFKEWRAA 161 (359)
Q Consensus 88 ~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~-~~~-----~~~~~~ll~~l~~~ 161 (359)
+..++++|.|.. . +.| ..++..+++.|+|+|+|++-.+.. +.. .+.+.++++++++.
T Consensus 99 ~~pvi~si~g~~---~-------------~~~-~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~ 161 (325)
T cd04739 99 SIPVIASLNGVS---A-------------GGW-VDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA 161 (325)
T ss_pred CCeEEEEeCCCC---H-------------HHH-HHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc
Confidence 577899997632 1 223 344555677789999999965321 111 12344555555554
Q ss_pred H
Q 036029 162 V 162 (359)
Q Consensus 162 l 162 (359)
.
T Consensus 162 ~ 162 (325)
T cd04739 162 V 162 (325)
T ss_pred c
Confidence 4
No 135
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=33.28 E-value=1.4e+02 Score=27.93 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcCcceEEEEeeecCC-----------CcchhhHHHHHHHHHHHHH
Q 036029 118 SFIDSSIKIARLYGFQGLDLSWSWANT-----------SWDNYNIGILFKEWRAAVA 163 (359)
Q Consensus 118 ~f~~~i~~~l~~~~~DGidiD~E~~~~-----------~~~~~~~~~ll~~l~~~l~ 163 (359)
......+.++.+.|+|+|||+.--|.. -.+.+...++|++++++.+
T Consensus 79 ~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~ 135 (323)
T COG0042 79 ELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG 135 (323)
T ss_pred HHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC
Confidence 556667788889999999999987752 2466777888888888886
No 136
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=32.65 E-value=3.9e+02 Score=25.57 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHcCcceEEEEeeecCC
Q 036029 117 KSFIDSSIKIARLYGFQGLDLSWSWANT 144 (359)
Q Consensus 117 ~~f~~~i~~~l~~~~~DGidiD~E~~~~ 144 (359)
+.-++++++.--++|+.=||=-|-|-+.
T Consensus 33 ~~~~~~~i~~aie~GiNyidTA~~Yh~g 60 (391)
T COG1453 33 EENANETIDYAIEHGINYIDTAWPYHGG 60 (391)
T ss_pred HHHHHHHHHHHHHcCCceEeecccccCC
Confidence 4567777888888899999999887554
No 137
>PLN03231 putative alpha-galactosidase; Provisional
Probab=32.39 E-value=4.5e+02 Score=25.04 Aligned_cols=57 Identities=14% Similarity=0.061 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEe
Q 036029 115 SRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARV 181 (359)
Q Consensus 115 ~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~ 181 (359)
-.+.|.+++++...+.|+|=|-+|+-+...... ..-++.++++|.+.++ +..+|+..
T Consensus 160 gaq~y~~~~a~~fA~WGVDylK~D~c~~~~~~~----~~~y~~m~~AL~~tGR------pIv~Slc~ 216 (357)
T PLN03231 160 GGKLFIQSLYDQYASWGIDFIKHDCVFGAENPQ----LDEILTVSKAIRNSGR------PMIYSLSP 216 (357)
T ss_pred hHHHHHHHHHHHHHHhCCCEEeecccCCCCccc----HHHHHHHHHHHHHhCC------CeEEEecC
Confidence 346789999999999999999999865432121 2235688888887765 47788763
No 138
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=32.31 E-value=4.2e+02 Score=24.85 Aligned_cols=78 Identities=13% Similarity=0.074 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCC-----Ccchh
Q 036029 75 FSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANT-----SWDNY 149 (359)
Q Consensus 75 ~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~-----~~~~~ 149 (359)
...+.+.+++...++.+.++||+... ......-+.|+..+..+- . ..|.++|+.-.|.. .++.+
T Consensus 121 ~~~~l~~i~~~~~~~~i~vsi~~~~~---------~~~~~~~~dy~~~~~~~~-~-~ad~iElNlScPn~~~~~~~~~~~ 189 (335)
T TIGR01036 121 ADVLVERLKRARYKGPIGINIGKNKD---------TPSEDAKEDYAACLRKLG-P-LADYLVVNVSSPNTPGLRDLQYKA 189 (335)
T ss_pred HHHHHHHHhhccCCCcEEEEEeCCCC---------CCcccCHHHHHHHHHHHh-h-hCCEEEEEccCCCCCCcccccCHH
Confidence 34444455554456889999987421 011223356665555543 3 38999999976642 24567
Q ss_pred hHHHHHHHHHHHHH
Q 036029 150 NIGILFKEWRAAVA 163 (359)
Q Consensus 150 ~~~~ll~~l~~~l~ 163 (359)
.+.++++.+++..+
T Consensus 190 ~~~~i~~~V~~~~~ 203 (335)
T TIGR01036 190 ELRDLLTAVKQEQD 203 (335)
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888888776
No 139
>PLN02161 beta-amylase
Probab=32.03 E-value=94 Score=30.87 Aligned_cols=44 Identities=23% Similarity=0.278 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHcCcceEEEEeeecCC------CcchhhHHHHHHHHHHH
Q 036029 117 KSFIDSSIKIARLYGFQGLDLSWSWANT------SWDNYNIGILFKEWRAA 161 (359)
Q Consensus 117 ~~f~~~i~~~l~~~~~DGidiD~E~~~~------~~~~~~~~~ll~~l~~~ 161 (359)
+.|..++ ..|+..|.|||.+|.-|..- .-+...|.+|++.+|++
T Consensus 117 ~al~~~L-~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~ 166 (531)
T PLN02161 117 KALTVSL-KALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLISEA 166 (531)
T ss_pred HHHHHHH-HHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHHHc
Confidence 4555554 55689999999999866431 24778888888877753
No 140
>PLN00197 beta-amylase; Provisional
Probab=31.84 E-value=89 Score=31.31 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHcCcceEEEEeeecCC------CcchhhHHHHHHHHHHH
Q 036029 117 KSFIDSSIKIARLYGFQGLDLSWSWANT------SWDNYNIGILFKEWRAA 161 (359)
Q Consensus 117 ~~f~~~i~~~l~~~~~DGidiD~E~~~~------~~~~~~~~~ll~~l~~~ 161 (359)
+.|.+++ ..|+..|.|||.+|.-|..- .-+...|.+|++.+|++
T Consensus 127 ~~l~~~L-~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~ 176 (573)
T PLN00197 127 KAMKASL-QALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRH 176 (573)
T ss_pred HHHHHHH-HHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHc
Confidence 4454444 56689999999999866431 24778888888877653
No 141
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=31.79 E-value=63 Score=27.23 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=30.2
Q ss_pred HHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHhh
Q 036029 124 IKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEAR 167 (359)
Q Consensus 124 ~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~~ 167 (359)
.+.+++.|||||++....... .. ....-++++++.+++.+.
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~-~~--~~~~~~~~~~~~~~~~gl 41 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQP-WD--EKDDEAEELRRLLEDYGL 41 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSH-HT--HHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHcCCCEEEEecCCCcc-cc--cchHHHHHHHHHHHHcCC
Confidence 367899999999999875542 11 116778889999988764
No 142
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=31.68 E-value=2.1e+02 Score=30.06 Aligned_cols=71 Identities=17% Similarity=0.175 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHhcCCCce---EEEEE-cCCCCCCCc--c-----------------------ccc------ccCChhhH
Q 036029 72 EKQFSNFTDTVKKKNPSIT---TLLSI-GGGKNPNYS--T-----------------------YSS------MASNPSSR 116 (359)
Q Consensus 72 ~~~~~~~~~~lk~~~~~~k---vllsi-gg~~~~~~~--~-----------------------~~~------~~~~~~~r 116 (359)
...+..+++.+|+++|++| |+-++ |=|++-.++ . +.. -+-+++..
T Consensus 287 ~~GL~~~V~~ik~~~~~Ik~V~VWHAL~GYWgGi~P~~~~~~~~k~~~~~~spg~~~~~~d~~~d~~~~~g~glv~p~~~ 366 (747)
T PF05691_consen 287 PSGLKHFVSDIKEKFPGIKYVYVWHALCGYWGGISPDGMLAYNYKLVYPKLSPGLQGNMPDLAVDSIVKGGLGLVDPEDA 366 (747)
T ss_pred cccHHHHHHHHHhhCCCCCEEEEeehhcceecCcCCCCccccccceeecccCCcccccCccccccccccCcccccCHHHH
Confidence 4578889999999998876 33454 323331110 0 000 12367778
Q ss_pred HHHHHHHHHHHHHcCcceEEEEeeec
Q 036029 117 KSFIDSSIKIARLYGFQGLDLSWSWA 142 (359)
Q Consensus 117 ~~f~~~i~~~l~~~~~DGidiD~E~~ 142 (359)
.+|-+..-++|.+-|+|||-+|-+..
T Consensus 367 ~~FYd~~hsyL~s~GVDgVKVD~Q~~ 392 (747)
T PF05691_consen 367 FRFYDDFHSYLASAGVDGVKVDVQAI 392 (747)
T ss_pred HHHHHHHHHHHHHcCCCEEEEchhhh
Confidence 89999999999999999999998754
No 143
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=31.63 E-value=1.6e+02 Score=27.08 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=21.4
Q ss_pred CChhhHHHHHHHHHHHHHHcCcceEEEEeee
Q 036029 111 SNPSSRKSFIDSSIKIARLYGFQGLDLSWSW 141 (359)
Q Consensus 111 ~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~ 141 (359)
.+++.|+-+ .+.++.+.+.|+||+-+|+-.
T Consensus 130 tnp~a~~w~-~~~~~~~~~~Gid~~~~D~~e 159 (308)
T cd06593 130 TNPDACKWY-KDKLKPLLDMGVDCFKTDFGE 159 (308)
T ss_pred CCHHHHHHH-HHHHHHHHHhCCcEEecCCCC
Confidence 466777555 455556667899999999843
No 144
>COG3410 Uncharacterized conserved protein [Function unknown]
Probab=31.57 E-value=98 Score=25.83 Aligned_cols=44 Identities=18% Similarity=0.090 Sum_probs=34.4
Q ss_pred ChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHH
Q 036029 112 NPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEW 158 (359)
Q Consensus 112 ~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l 158 (359)
+++..++.+.|-+..|-+-|..|+.|-+|-| +-++....+++..
T Consensus 146 ~~eik~kiIkNsinvlmtRGIrGlyiyaeDp---elrerl~~l~~~~ 189 (191)
T COG3410 146 NQEIKEKIIKNSINVLMTRGIRGLYIYAEDP---ELRERLVELKRGK 189 (191)
T ss_pred CHHHHHHHHHHHHHHHHhcccceEEEEEeCH---HHHHHHHHHHhhh
Confidence 5677789999999999999999999999865 3455555555544
No 145
>TIGR01631 Trypano_RHS trypanosome RHS (retrotransposon hot spot) family. This model describes full-length and part-length members of the RHS (retrotransposon hot spot) family in Trypanosoma brucei and Trypanosoma cruzi. Members of this family are frequently interrupted by non-LTR retrotransposons inserted at exactly the same relative position.
Probab=31.50 E-value=5.4e+02 Score=27.12 Aligned_cols=101 Identities=17% Similarity=0.272 Sum_probs=65.5
Q ss_pred ccHHHHHHHHHHCCC---CCCceeeecccceeeeeecCCCCCCCCcccCCCCCCCCccccHHHHHHhhhhCCCCccEEEe
Q 036029 228 FNTEYGITAWTDEGL---SADKLVLGLPCYGYAWTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYIKSYGPNVPVMYN 304 (359)
Q Consensus 228 ~~~~~~~~~~~~~g~---~~~Kl~lGlp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d 304 (359)
+-++..+..|..... |+..+++|-|--|.+... |+.-.+++..+-.+. .+.+.-
T Consensus 261 ~iVk~~Lt~W~~~~~~~~p~~~vlIGTPGIGKS~~a--------------------GSyLLYqLLHydae~---L~vV~y 317 (760)
T TIGR01631 261 YIVKNGLTLWLSSHAKFEPERRVLIGTPGIGKSFGV--------------------GSFLLYQLLHYDAEK---LQVVAY 317 (760)
T ss_pred HHHHhhHHHhhcCCCCCCCCCeEEECCCCccccccc--------------------hHHHHHHHHhccHhh---CcEEEE
Confidence 456777777765432 788999999998877632 444445554421111 122211
Q ss_pred CCeeeeEEE-eC-----CEEEEEcCHHHHHHHHHHHHHCCCcEEEEEEccCCC
Q 036029 305 STYVMNYCS-IG-----KIWFGFDDVEAVRMKVAYAKEKKLRGYFVWKVAYDH 351 (359)
Q Consensus 305 ~~~~~~y~~-~~-----~~~i~ydd~~S~~~K~~~~~~~gl~Gv~iW~l~~Dd 351 (359)
-.....|++ +. +....|.+..+...-++-....|+.|..|++++.+.
T Consensus 318 ~~~~~aylfdkt~~~~~g~V~~Y~~~~~~~~~v~~l~~rg~kGYIIyDv~~~~ 370 (760)
T TIGR01631 318 FVAGRAYLFDKTSGGGVGRVSFYEKDKAAADVVEALSDEKVKGYIIYDFAKDD 370 (760)
T ss_pred EeCCEEEEEEeccCCCCceEEEecCcchHHHHHHHHhhcccceeEEEecccCC
Confidence 223455665 21 246678888888888888889999999999999886
No 146
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=31.41 E-value=4.5e+02 Score=24.75 Aligned_cols=68 Identities=13% Similarity=0.214 Sum_probs=39.3
Q ss_pred HHHHhcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcC--cceEEEEeeecCCCcchhhHHHHHHH
Q 036029 80 DTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYG--FQGLDLSWSWANTSWDNYNIGILFKE 157 (359)
Q Consensus 80 ~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~--~DGidiD~E~~~~~~~~~~~~~ll~~ 157 (359)
+.+|+..|++||++-+..... . ...+...+.|+++| ||=|-+.+ ||.-....+++..-++.
T Consensus 161 ~AVr~~~p~~kV~lH~~~~~~------------~----~~~~~~f~~l~~~g~d~DviGlSy-YP~w~~~l~~l~~~l~~ 223 (332)
T PF07745_consen 161 KAVREVDPNIKVMLHLANGGD------------N----DLYRWFFDNLKAAGVDFDVIGLSY-YPFWHGTLEDLKNNLND 223 (332)
T ss_dssp HHHHTHSSTSEEEEEES-TTS------------H----HHHHHHHHHHHHTTGG-SEEEEEE--STTST-HHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEECCCCc------------h----HHHHHHHHHHHhcCCCcceEEEec-CCCCcchHHHHHHHHHH
Confidence 467778899999999975442 2 23334444555544 34444433 45433456677777777
Q ss_pred HHHHHHH
Q 036029 158 WRAAVAL 164 (359)
Q Consensus 158 l~~~l~~ 164 (359)
|+++++.
T Consensus 224 l~~ry~K 230 (332)
T PF07745_consen 224 LASRYGK 230 (332)
T ss_dssp HHHHHT-
T ss_pred HHHHhCC
Confidence 8877753
No 147
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=31.30 E-value=2.5e+02 Score=29.47 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCCCce---EEEEE-cCCCC--CCCccc--c---------------------------cccCChhhHH
Q 036029 73 KQFSNFTDTVKKKNPSIT---TLLSI-GGGKN--PNYSTY--S---------------------------SMASNPSSRK 117 (359)
Q Consensus 73 ~~~~~~~~~lk~~~~~~k---vllsi-gg~~~--~~~~~~--~---------------------------~~~~~~~~r~ 117 (359)
..++.++..+|++++++| |+-+| |-|++ ++.+.+ + -.+-+++...
T Consensus 305 ~Glk~~v~~iK~~~~~vk~VyVWHAL~GYWGGv~P~~~~~~~~~~~~p~~spg~~~~~~d~~~d~~~~~g~glv~Pe~~~ 384 (777)
T PLN02711 305 KGMGAFIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVPGLPESKVVAPKLSPGLKMTMEDLAVDKIVNNGVGLVPPELAY 384 (777)
T ss_pred CcHHHHHHHHHhhCCCCCEEEEeeeccCcccCcCCCCCCCccceeeccccCcccccccccccccccccCcccccCHHHHH
Confidence 477888889999887665 34444 33433 111110 0 1124577778
Q ss_pred HHHHHHHHHHHHcCcceEEEEeee
Q 036029 118 SFIDSSIKIARLYGFQGLDLSWSW 141 (359)
Q Consensus 118 ~f~~~i~~~l~~~~~DGidiD~E~ 141 (359)
+|-+..-++|.+.|+|||-+|-+.
T Consensus 385 ~FY~~~hs~Las~GVDgVKVDvQ~ 408 (777)
T PLN02711 385 QMYEGLHSHLQSVGIDGVKVDVIH 408 (777)
T ss_pred HHHHHHHHHHHHcCCCeEEEchhh
Confidence 999999999999999999999765
No 148
>PLN02803 beta-amylase
Probab=30.84 E-value=1e+02 Score=30.76 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHcCcceEEEEeeecCC------CcchhhHHHHHHHHHHH
Q 036029 117 KSFIDSSIKIARLYGFQGLDLSWSWANT------SWDNYNIGILFKEWRAA 161 (359)
Q Consensus 117 ~~f~~~i~~~l~~~~~DGidiD~E~~~~------~~~~~~~~~ll~~l~~~ 161 (359)
+.|.+++ ..|+..|.|||.+|.-|..- .-+...|.+|++.+|++
T Consensus 107 ~~l~~~L-~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~ 156 (548)
T PLN02803 107 RAMNASL-MALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKH 156 (548)
T ss_pred HHHHHHH-HHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHc
Confidence 4455554 56689999999999866431 25778888888877653
No 149
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=30.43 E-value=2.3e+02 Score=24.48 Aligned_cols=76 Identities=12% Similarity=0.059 Sum_probs=44.0
Q ss_pred cccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeecCC
Q 036029 106 YSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSP 185 (359)
Q Consensus 106 ~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~ 185 (359)
.+-|..++. ++ ++.+.+.|.|-|-+.+|-. .....+++.+|+ .+ ....+++-+.+
T Consensus 62 vHLMv~~P~---~~----i~~~~~~g~~~i~~H~E~~------~~~~~~i~~ik~----~g--------~k~GialnP~T 116 (201)
T PF00834_consen 62 VHLMVENPE---RY----IEEFAEAGADYITFHAEAT------EDPKETIKYIKE----AG--------IKAGIALNPET 116 (201)
T ss_dssp EEEESSSGG---GH----HHHHHHHT-SEEEEEGGGT------TTHHHHHHHHHH----TT--------SEEEEEE-TTS
T ss_pred EEeeeccHH---HH----HHHHHhcCCCEEEEcccch------hCHHHHHHHHHH----hC--------CCEEEEEECCC
Confidence 344555553 23 3445666999999999822 234455555554 33 35677765443
Q ss_pred CccccccCHhHHhccccEEEeeccc
Q 036029 186 YSTIGAYSIDSIRQYLNWVHVITAE 210 (359)
Q Consensus 186 ~~~~~~~~~~~l~~~vD~i~vm~yd 210 (359)
.... +..+.+.+|+|.+|+-+
T Consensus 117 ~~~~----~~~~l~~vD~VlvMsV~ 137 (201)
T PF00834_consen 117 PVEE----LEPYLDQVDMVLVMSVE 137 (201)
T ss_dssp -GGG----GTTTGCCSSEEEEESS-
T ss_pred CchH----HHHHhhhcCEEEEEEec
Confidence 2221 34567789999999976
No 150
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=30.17 E-value=2.3e+02 Score=23.05 Aligned_cols=64 Identities=14% Similarity=0.145 Sum_probs=38.4
Q ss_pred chHHHHHHHHHHHhcCCCceEEE-EEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEE
Q 036029 71 DEKQFSNFTDTVKKKNPSITTLL-SIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLS 138 (359)
Q Consensus 71 ~~~~~~~~~~~lk~~~~~~kvll-sigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD 138 (359)
-...+..+++.++++.|+++|++ ++--... ... .........+++.+.+.++.+++++.=||+.
T Consensus 73 ~~~~~~~l~~~~~~~~p~~~vi~~~~~p~~~---~~~-~~~~~~~~~~~~n~~l~~~a~~~~~~~id~~ 137 (174)
T cd01841 73 FIKWYRDIIEQIREEFPNTKIYLLSVLPVLE---EDE-IKTRSNTRIQRLNDAIKELAPELGVTFIDLN 137 (174)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEeeCCcCc---ccc-cccCCHHHHHHHHHHHHHHHHHCCCEEEEcH
Confidence 34567788888888888898774 3322111 110 0111234567788888888888876555554
No 151
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=30.00 E-value=3.8e+02 Score=23.44 Aligned_cols=48 Identities=13% Similarity=0.128 Sum_probs=26.6
Q ss_pred CCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeec
Q 036029 87 PSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWA 142 (359)
Q Consensus 87 ~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~ 142 (359)
.++.+++++-.... ...| -.+.+.+ ++-+...+.+.+.|-|||+++.+
T Consensus 56 ~~~piI~T~R~~~e--GG~~---~~~~~~~---~~ll~~~~~~~~~d~vDiEl~~~ 103 (228)
T TIGR01093 56 PDKPLIFTIRTISE--GGKF---PGNEEEY---LEELKRAADSPGPDFVDIELFLP 103 (228)
T ss_pred CCCcEEEEECChhh--CCCC---CCCHHHH---HHHHHHHHHhCCCCEEEEEccCC
Confidence 46899999853221 1111 1223333 33344444667789999998743
No 152
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=29.72 E-value=78 Score=28.05 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHh
Q 036029 120 IDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEA 166 (359)
Q Consensus 120 ~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~ 166 (359)
....++.+++.|||||+|.+.+ . .-++++++.++..+
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~--~--------~~~~~l~~~l~~~g 52 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPY--D--------WDAEALKARLAAAG 52 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCc--c--------CCHHHHHHHHHHcC
Confidence 4567778888899999987521 1 12466666666654
No 153
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=29.65 E-value=1.2e+02 Score=30.02 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=30.5
Q ss_pred ChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHH
Q 036029 112 NPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVAL 164 (359)
Q Consensus 112 ~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~ 164 (359)
+++-|+.+.+.+.-|++++|+||.-||--.-.. ..|+++++.+++.
T Consensus 207 np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~-------~~f~~~~~~~~~~ 252 (479)
T PRK09441 207 HPEVREELKYWAKWYMETTGFDGFRLDAVKHID-------AWFIKEWIEHVRE 252 (479)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCC-------HHHHHHHHHHHHH
Confidence 567777777766666667999999999643222 2355555655543
No 154
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=29.13 E-value=2.1e+02 Score=27.24 Aligned_cols=47 Identities=9% Similarity=0.067 Sum_probs=28.5
Q ss_pred CcEEEEEeEEEeCCCcE----E-ecCccchHHHHHHHHHHHhcCCCceEEEEEc
Q 036029 48 FTHLMCGFADVNSTSYE----L-SLSPSDEKQFSNFTDTVKKKNPSITTLLSIG 96 (359)
Q Consensus 48 ~Thii~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~lk~~~~~~kvllsig 96 (359)
+-=||-....+.+.+.. . ...+..-+.++++++.+|++ +.|+++-|.
T Consensus 49 ~GLIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~lad~vH~~--Ga~i~~QL~ 100 (362)
T PRK10605 49 AGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAE--GGHIAVQLW 100 (362)
T ss_pred CCEEEECceeeCcccccCCCCCcccCHHHHHHHHHHHHHHHhC--CCEEEEecc
Confidence 34455555556554321 1 12333557778888888887 788888873
No 155
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=29.09 E-value=2.7e+02 Score=26.02 Aligned_cols=66 Identities=14% Similarity=0.024 Sum_probs=41.9
Q ss_pred CCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCC-----CcchhhHHHHHHHHHHH
Q 036029 87 PSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANT-----SWDNYNIGILFKEWRAA 161 (359)
Q Consensus 87 ~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~-----~~~~~~~~~ll~~l~~~ 161 (359)
.+..+++||+|... +. ..+.-+.|++.+-.. .. ..|+|+|++-.|.. .++.+.+.++++++|+.
T Consensus 127 ~~~plivsi~g~~~---~~------~~~~~~d~~~~~~~~-~~-~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~ 195 (327)
T cd04738 127 RGGPLGVNIGKNKD---TP------LEDAVEDYVIGVRKL-GP-YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEE 195 (327)
T ss_pred CCCeEEEEEeCCCC---Cc------ccccHHHHHHHHHHH-Hh-hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHH
Confidence 46889999988542 11 122234455444443 23 38999999966643 24567788888988888
Q ss_pred HH
Q 036029 162 VA 163 (359)
Q Consensus 162 l~ 163 (359)
..
T Consensus 196 ~~ 197 (327)
T cd04738 196 RN 197 (327)
T ss_pred Hh
Confidence 75
No 156
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=29.06 E-value=3.1e+02 Score=22.16 Aligned_cols=60 Identities=13% Similarity=0.100 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHhcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEE
Q 036029 72 EKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDL 137 (359)
Q Consensus 72 ~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidi 137 (359)
...+..+++.+++++|+++|++.--- .. . ..........+.+-+.+.++.+++++.=||+
T Consensus 71 ~~~l~~li~~~~~~~~~~~vi~~~~~-p~--~---~~~~~~~~~~~~~n~~l~~~a~~~~~~~id~ 130 (169)
T cd01828 71 VANYRTILEKLRKHFPNIKIVVQSIL-PV--G---ELKSIPNEQIEELNRQLAQLAQQEGVTFLDL 130 (169)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEecC-Cc--C---ccCcCCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 34556666667776677776664110 00 0 0111123344556666666666665544443
No 157
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=28.95 E-value=4.4e+02 Score=23.84 Aligned_cols=97 Identities=15% Similarity=0.094 Sum_probs=53.0
Q ss_pred HHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeecCCCccccccCHhHHhcccc-
Q 036029 124 IKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLN- 202 (359)
Q Consensus 124 ~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~~vD- 202 (359)
++.+++.|.||+-|--+.+ ++ ..++.+.+++.+. .+...+++.+ ... .+..+.+.++
T Consensus 112 ~~~~~~aGvdgviipDLP~---ee-------~~~~~~~~~~~gi--------~~I~lv~PtT--~~e--ri~~i~~~a~g 169 (263)
T CHL00200 112 IKKISQAGVKGLIIPDLPY---EE-------SDYLISVCNLYNI--------ELILLIAPTS--SKS--RIQKIARAAPG 169 (263)
T ss_pred HHHHHHcCCeEEEecCCCH---HH-------HHHHHHHHHHcCC--------CEEEEECCCC--CHH--HHHHHHHhCCC
Confidence 4455778999999986632 11 3455555665553 3333333222 221 3578888888
Q ss_pred EEEeecccccCCCCCCCCCCCCcccccHHHHHHHHHHCCCCCCceeeec
Q 036029 203 WVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGL 251 (359)
Q Consensus 203 ~i~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~~~~g~~~~Kl~lGl 251 (359)
|+.+|+. . +.+|....+...+...++...+ .-...|++|.
T Consensus 170 FIY~vS~--~-----GvTG~~~~~~~~~~~~i~~ir~--~t~~Pi~vGF 209 (263)
T CHL00200 170 CIYLVST--T-----GVTGLKTELDKKLKKLIETIKK--MTNKPIILGF 209 (263)
T ss_pred cEEEEcC--C-----CCCCCCccccHHHHHHHHHHHH--hcCCCEEEEC
Confidence 8888873 2 3344443333355555655544 2234566654
No 158
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=28.95 E-value=4.1e+02 Score=23.57 Aligned_cols=72 Identities=10% Similarity=0.083 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcC-cceEEEEeeecCCCcchhhHHHHH
Q 036029 77 NFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYG-FQGLDLSWSWANTSWDNYNIGILF 155 (359)
Q Consensus 77 ~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~-~DGidiD~E~~~~~~~~~~~~~ll 155 (359)
...+.+|+..|++|+++. +.+. . ....++..+.+-+-.+.++.. +|||-+-+-......+...+.+.|
T Consensus 107 ~af~~ar~~~P~a~l~~N--dy~~---~------~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l 175 (254)
T smart00633 107 KAFRYAREADPDAKLFYN--DYNT---E------EPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAAL 175 (254)
T ss_pred HHHHHHHHhCCCCEEEEe--ccCC---c------CccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHH
Confidence 334478888899999885 2221 1 111344555544444444433 799998654322112234455555
Q ss_pred HHHH
Q 036029 156 KEWR 159 (359)
Q Consensus 156 ~~l~ 159 (359)
+++.
T Consensus 176 ~~~~ 179 (254)
T smart00633 176 DRFA 179 (254)
T ss_pred HHHH
Confidence 5544
No 159
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=28.92 E-value=2.7e+02 Score=26.78 Aligned_cols=71 Identities=13% Similarity=0.097 Sum_probs=43.7
Q ss_pred chHHHHHHHHHHHhcCCCceEEEEEcCCCCCCCccccc---c----cCChhhHHHH---HHHHHHHHHHcCcceEEEEee
Q 036029 71 DEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSS---M----ASNPSSRKSF---IDSSIKIARLYGFQGLDLSWS 140 (359)
Q Consensus 71 ~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~---~----~~~~~~r~~f---~~~i~~~l~~~~~DGidiD~E 140 (359)
....++.+.+++|++ ++|+-+-...+.. ....+.. . ...+...+-+ ..++.++|.+||=|.+=+|+.
T Consensus 126 krDiv~el~~A~rk~--Glk~G~Y~S~~DW-~~p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~ 202 (384)
T smart00812 126 KRDLVGELADAVRKR--GLKFGLYHSLFDW-FNPLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGG 202 (384)
T ss_pred CcchHHHHHHHHHHc--CCeEEEEcCHHHh-CCCccccccccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 456678888888887 7888876654322 0111111 0 0111222222 689999999999999988887
Q ss_pred ecCC
Q 036029 141 WANT 144 (359)
Q Consensus 141 ~~~~ 144 (359)
++..
T Consensus 203 ~~~~ 206 (384)
T smart00812 203 WEAP 206 (384)
T ss_pred CCCc
Confidence 6543
No 160
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=28.81 E-value=1.6e+02 Score=26.53 Aligned_cols=43 Identities=19% Similarity=0.066 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHH
Q 036029 119 FIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAV 162 (359)
Q Consensus 119 f~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l 162 (359)
.+...+..+.+.|.|=|||..|.+. .++.+.+..+|+.+++..
T Consensus 26 ~i~~~A~~~~~~GAdiIDVg~~~~~-~eE~~r~~~~v~~l~~~~ 68 (261)
T PRK07535 26 FIQKLALKQAEAGADYLDVNAGTAV-EEEPETMEWLVETVQEVV 68 (261)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCc-hhHHHHHHHHHHHHHHhC
Confidence 4444555556779999999998443 355677888888887543
No 161
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=28.71 E-value=98 Score=27.86 Aligned_cols=46 Identities=30% Similarity=0.371 Sum_probs=31.2
Q ss_pred ChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHH
Q 036029 112 NPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALE 165 (359)
Q Consensus 112 ~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~ 165 (359)
+++.|+.+++ ++++..++++||+-||--.-.. ..++++++.+++..
T Consensus 143 n~~v~~~i~~-~~~~w~~~giDGfR~D~~~~~~-------~~~~~~~~~~~~~~ 188 (316)
T PF00128_consen 143 NPEVREYIID-VLKFWIEEGIDGFRLDAAKHIP-------KEFWKEFRDEVKEE 188 (316)
T ss_dssp SHHHHHHHHH-HHHHHHHTTESEEEETTGGGSS-------HHHHHHHHHHHHHH
T ss_pred hhhhhhhhcc-cccchhhceEeEEEEccccccc-------hhhHHHHhhhhhhh
Confidence 5566776777 6666666779999999643322 27777777777765
No 162
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=28.28 E-value=4.3e+02 Score=24.86 Aligned_cols=87 Identities=11% Similarity=0.152 Sum_probs=47.3
Q ss_pred chHHHHHHHHHHHhcCCCceEEEEEcCCCCCCCcccccccC--------ChhhH----H-HHHHHHHHHHHHcCcceEEE
Q 036029 71 DEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMAS--------NPSSR----K-SFIDSSIKIARLYGFQGLDL 137 (359)
Q Consensus 71 ~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~--------~~~~r----~-~f~~~i~~~l~~~~~DGidi 137 (359)
....+..+++++|++ ++|+-+-...+.. ....+..-.. ..... + .....+.+++.+|..|.+=+
T Consensus 136 krDiv~El~~A~rk~--Glk~G~Y~S~~dw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWf 212 (346)
T PF01120_consen 136 KRDIVGELADACRKY--GLKFGLYYSPWDW-HHPDYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWF 212 (346)
T ss_dssp TS-HHHHHHHHHHHT--T-EEEEEEESSSC-CCTTTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEE
T ss_pred CCCHHHHHHHHHHHc--CCeEEEEecchHh-cCcccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEe
Confidence 345568888888887 7888766654421 0111111110 11111 2 45578888999999999988
Q ss_pred EeeecCCCcchhhHHHHHHHHHHH
Q 036029 138 SWSWANTSWDNYNIGILFKEWRAA 161 (359)
Q Consensus 138 D~E~~~~~~~~~~~~~ll~~l~~~ 161 (359)
|.-++.. .+...+..+...+|+.
T Consensus 213 Dg~~~~~-~~~~~~~~~~~~i~~~ 235 (346)
T PF01120_consen 213 DGGWPDP-DEDWDSAELYNWIRKL 235 (346)
T ss_dssp ESTTSCC-CTHHHHHHHHHHHHHH
T ss_pred cCCCCcc-ccccCHHHHHHHHHHh
Confidence 8766542 3333444444444433
No 163
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=27.89 E-value=1.1e+02 Score=27.45 Aligned_cols=47 Identities=11% Similarity=0.047 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCcceEEEEeeecCCCcchhhH-HHHHHHHHHHHHHHhh
Q 036029 121 DSSIKIARLYGFQGLDLSWSWANTSWDNYNI-GILFKEWRAAVALEAR 167 (359)
Q Consensus 121 ~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~-~~ll~~l~~~l~~~~~ 167 (359)
...++.+++.|||||+|....+........+ ..-++++++.+.+.+.
T Consensus 19 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl 66 (284)
T PRK13210 19 EERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGV 66 (284)
T ss_pred HHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCC
Confidence 5678889999999999975432110000111 2457889999988763
No 164
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=27.68 E-value=3.4e+02 Score=23.03 Aligned_cols=65 Identities=12% Similarity=0.148 Sum_probs=34.5
Q ss_pred chHHHHHHHHHHHhcCCCceEEEEEcCCCCCCCccccccc-CChhhHHHHHHHHHHHHHHcCcceEEE
Q 036029 71 DEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMA-SNPSSRKSFIDSSIKIARLYGFQGLDL 137 (359)
Q Consensus 71 ~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~-~~~~~r~~f~~~i~~~l~~~~~DGidi 137 (359)
-......|++.+++++|.+.|++.---... ...+..-. ...+...+.++.+++.+++.|-..|.+
T Consensus 76 ~~~~~~~fv~~iR~~hP~tPIllv~~~~~~--~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~ 141 (178)
T PF14606_consen 76 FRERLDGFVKTIREAHPDTPILLVSPIPYP--AGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYY 141 (178)
T ss_dssp HHHHHHHHHHHHHTT-SSS-EEEEE----T--TTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEecCCcc--ccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 456677899999999999988865321111 12222211 123444556677777777767665543
No 165
>PLN02801 beta-amylase
Probab=27.56 E-value=1.2e+02 Score=30.04 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCcceEEEEeeecCC------CcchhhHHHHHHHHHHH
Q 036029 120 IDSSIKIARLYGFQGLDLSWSWANT------SWDNYNIGILFKEWRAA 161 (359)
Q Consensus 120 ~~~i~~~l~~~~~DGidiD~E~~~~------~~~~~~~~~ll~~l~~~ 161 (359)
+++-+..|+..|.|||.+|.-|..- .-+...|.+|++.+|++
T Consensus 39 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~ 86 (517)
T PLN02801 39 LEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSF 86 (517)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHc
Confidence 4444567889999999999865331 25778888888877653
No 166
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=27.36 E-value=4.4e+02 Score=23.33 Aligned_cols=67 Identities=18% Similarity=0.064 Sum_probs=37.4
Q ss_pred HHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeecCCCccccccCHhHHhc-c
Q 036029 122 SSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQ-Y 200 (359)
Q Consensus 122 ~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~-~ 200 (359)
..++.+.+.|.||+-+--..+ + -++++.+.+++.+. .....+.+.+ ... .+..+.+ .
T Consensus 95 ~fi~~~~~aG~~giiipDl~~------e----e~~~~~~~~~~~g~--------~~i~~i~P~T--~~~--~i~~i~~~~ 152 (242)
T cd04724 95 RFLRDAKEAGVDGLIIPDLPP------E----EAEEFREAAKEYGL--------DLIFLVAPTT--PDE--RIKKIAELA 152 (242)
T ss_pred HHHHHHHHCCCcEEEECCCCH------H----HHHHHHHHHHHcCC--------cEEEEeCCCC--CHH--HHHHHHhhC
Confidence 345556777999999843211 1 34555566665542 3444343332 111 2345555 7
Q ss_pred ccEEEeeccc
Q 036029 201 LNWVHVITAE 210 (359)
Q Consensus 201 vD~i~vm~yd 210 (359)
.|++.+|+..
T Consensus 153 ~~~vy~~s~~ 162 (242)
T cd04724 153 SGFIYYVSRT 162 (242)
T ss_pred CCCEEEEeCC
Confidence 8999999863
No 167
>PRK09505 malS alpha-amylase; Reviewed
Probab=26.53 E-value=1.4e+02 Score=31.16 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=25.4
Q ss_pred ChhhHHHHHHHHHHHHHHcCcceEEEEee
Q 036029 112 NPSSRKSFIDSSIKIARLYGFQGLDLSWS 140 (359)
Q Consensus 112 ~~~~r~~f~~~i~~~l~~~~~DGidiD~E 140 (359)
|++-|+.+++.+..||+++|.||+-||--
T Consensus 435 n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaa 463 (683)
T PRK09505 435 GYTPRDYLTHWLSQWVRDYGIDGFRVDTA 463 (683)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEech
Confidence 55778889999999999999999999963
No 168
>PLN02705 beta-amylase
Probab=26.51 E-value=1.3e+02 Score=30.68 Aligned_cols=44 Identities=11% Similarity=0.111 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHcCcceEEEEeeecC------CCcchhhHHHHHHHHHHH
Q 036029 117 KSFIDSSIKIARLYGFQGLDLSWSWAN------TSWDNYNIGILFKEWRAA 161 (359)
Q Consensus 117 ~~f~~~i~~~l~~~~~DGidiD~E~~~------~~~~~~~~~~ll~~l~~~ 161 (359)
+.|.+++ ..|+..|.|||.+|.-|.. ..-++..|.+|++.+|++
T Consensus 268 ~al~a~L-~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~ 317 (681)
T PLN02705 268 EGVRQEL-SHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREF 317 (681)
T ss_pred HHHHHHH-HHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHHc
Confidence 4555554 4568899999999986643 125788888888877653
No 169
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=26.41 E-value=57 Score=22.04 Aligned_cols=17 Identities=41% Similarity=0.518 Sum_probs=8.8
Q ss_pred CchhhHHHHHHHHHHHh
Q 036029 1 MASKIIVLVLHICIFSE 17 (359)
Q Consensus 1 M~~~~~~~l~~~~~~~~ 17 (359)
|++|.+++-++|..+.+
T Consensus 1 MA~Kl~vialLC~aLva 17 (65)
T PF10731_consen 1 MASKLIVIALLCVALVA 17 (65)
T ss_pred CcchhhHHHHHHHHHHH
Confidence 77775544444444333
No 170
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=26.36 E-value=2.5e+02 Score=26.17 Aligned_cols=44 Identities=18% Similarity=0.119 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCcceEEEEeeecCCC-----------cchhhHHHHHHHHHHHH
Q 036029 118 SFIDSSIKIARLYGFQGLDLSWSWANTS-----------WDNYNIGILFKEWRAAV 162 (359)
Q Consensus 118 ~f~~~i~~~l~~~~~DGidiD~E~~~~~-----------~~~~~~~~ll~~l~~~l 162 (359)
.|++ .+..+.+.|+|+|||+.--|... .+.+...+.++++++++
T Consensus 78 ~~~~-aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~ 132 (321)
T PRK10415 78 EMAD-AARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV 132 (321)
T ss_pred HHHH-HHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc
Confidence 4443 44556778999999999877421 23444455555555544
No 171
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=26.26 E-value=2.4e+02 Score=26.21 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEcCCCCCCCccc-c----------------------------cccCChhhHHHHHHHH
Q 036029 73 KQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTY-S----------------------------SMASNPSSRKSFIDSS 123 (359)
Q Consensus 73 ~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~-~----------------------------~~~~~~~~r~~f~~~i 123 (359)
+....+++.||++ ++|+++.|--.-..++..+ . .=..|++.|+=+.+.+
T Consensus 71 Pdp~~mi~~Lh~~--G~~~~~~i~P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 148 (317)
T cd06594 71 PGLDELIEELKAR--GIRVLTYINPYLADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVI 148 (317)
T ss_pred CCHHHHHHHHHHC--CCEEEEEecCceecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHH
Confidence 4456788888887 7888887743211011111 1 1123688889899999
Q ss_pred HHHHHHcCcceEEEEeee
Q 036029 124 IKIARLYGFQGLDLSWSW 141 (359)
Q Consensus 124 ~~~l~~~~~DGidiD~E~ 141 (359)
.+++.++|+||+=+|+-+
T Consensus 149 ~~~~~~~Gvdg~w~D~~E 166 (317)
T cd06594 149 KEMLLDLGLSGWMADFGE 166 (317)
T ss_pred HHHhhhcCCcEEEecCCC
Confidence 999889999999999843
No 172
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=26.02 E-value=1.6e+02 Score=25.58 Aligned_cols=58 Identities=7% Similarity=0.135 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEee
Q 036029 73 KQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWS 140 (359)
Q Consensus 73 ~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E 140 (359)
......+..++... ++++++++--... ...+ -.+++.|.+ ++..+.+.+.|.|||++.
T Consensus 40 ~~~~~~l~~lr~~~-~~piI~T~R~~~e--GG~~---~~~~~~~~~----ll~~~~~~~~d~iDiE~~ 97 (224)
T PF01487_consen 40 EDISEQLAELRRSL-DLPIIFTVRTKEE--GGRF---QGSEEEYLE----LLERAIRLGPDYIDIELD 97 (224)
T ss_dssp HHHHHHHHHHHHHC-TSEEEEE--BGGG--TSSB---SS-HHHHHH----HHHHHHHHTSSEEEEEGG
T ss_pred HHHHHHHHHHHHhC-CCCEEEEeccccc--CCCC---cCCHHHHHH----HHHHHHHcCCCEEEEEcc
Confidence 44445555677665 7999999952211 1111 123344443 444444456999999876
No 173
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=25.62 E-value=1.4e+02 Score=26.82 Aligned_cols=47 Identities=13% Similarity=-0.016 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcCcceEEEEeeecCCCcch-hhHHHHHHHHHHHHHHHh
Q 036029 120 IDSSIKIARLYGFQGLDLSWSWANTSWDN-YNIGILFKEWRAAVALEA 166 (359)
Q Consensus 120 ~~~i~~~l~~~~~DGidiD~E~~~~~~~~-~~~~~ll~~l~~~l~~~~ 166 (359)
....++.+++.|||||+|........... ..-...+++++..+++.+
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 70 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETG 70 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcC
Confidence 34567788899999999976432110000 012346888888888776
No 174
>PRK12677 xylose isomerase; Provisional
Probab=25.14 E-value=1.9e+02 Score=27.78 Aligned_cols=47 Identities=9% Similarity=0.004 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCcceEEEEeeecCC-CcchhhHHHHHHHHHHHHHHHh
Q 036029 120 IDSSIKIARLYGFQGLDLSWSWANT-SWDNYNIGILFKEWRAAVALEA 166 (359)
Q Consensus 120 ~~~i~~~l~~~~~DGidiD~E~~~~-~~~~~~~~~ll~~l~~~l~~~~ 166 (359)
....+..+.+.||+||+|..+.+.. ..+...-...++++++.+...+
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~G 80 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETG 80 (384)
T ss_pred HHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcC
Confidence 4467788999999999997553221 0111112246888999998776
No 175
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=24.84 E-value=2.7e+02 Score=26.05 Aligned_cols=123 Identities=15% Similarity=0.138 Sum_probs=60.7
Q ss_pred CchhhHHHHHHHHHHHhcccCCCCCcE--EEEEecCCCCcCCCCCCCCCCcEEEEEeEEEeCCCcEEecCccchHHHHHH
Q 036029 1 MASKIIVLVLHICIFSESLPTRAQTLI--RAGYWDSGDEFFISDVNSALFTHLMCGFADVNSTSYELSLSPSDEKQFSNF 78 (359)
Q Consensus 1 M~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~y~~~~~~~~~~~i~~~~~Thii~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (359)
|++...+++.+++.+++..+..++... ++--.. +-.++.+....+.|++=+-+.++|.| ...+. .
T Consensus 1 Mrr~l~lll~~~l~l~s~~av~A~~~~~~~VIlvs---Dn~aD~~lA~~iaellNA~Vlttpwg------~ynes----~ 67 (337)
T COG2247 1 MRRLLMLLLASLLALSSPPAVSAQSQNTTVVILVS---DNEADLLLALPIAELLNAPVLTTPWG------IYNES----V 67 (337)
T ss_pred CccHHHHHHHHHHHHhcchhhhhhhcCceEEEEec---chHHHHHHhhHHHHHhCCeeEecCcc------cccHH----H
Confidence 666655554444444444443333322 222221 22233333344555554444455533 11222 2
Q ss_pred HHHHHhcCCCceEEEEEcCCCCCCCcccccccCC---------hhhHHHHHHHHHHHHHH---cCcceEEEEe
Q 036029 79 TDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASN---------PSSRKSFIDSSIKIARL---YGFQGLDLSW 139 (359)
Q Consensus 79 ~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~---------~~~r~~f~~~i~~~l~~---~~~DGidiD~ 139 (359)
...+.+.+|.. ++=|||... -+......+.| -..|-.-+.+++.++++ +.|+++-+=.
T Consensus 68 ~~eI~~lnpd~--VLIIGGp~A-Vs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvv 137 (337)
T COG2247 68 LDEIIELNPDL--VLIIGGPIA-VSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVV 137 (337)
T ss_pred HHHHHhhCCce--EEEECCCCc-CChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEE
Confidence 33455566544 777898754 23333332222 34678888999999963 4577554443
No 176
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=24.76 E-value=1.4e+02 Score=23.95 Aligned_cols=55 Identities=7% Similarity=0.103 Sum_probs=43.2
Q ss_pred ChhhHHHHHHHHHHHHHHcCcceEEEE-eeecCCCcchhhHHHHHHHHHHHHHHHh
Q 036029 112 NPSSRKSFIDSSIKIARLYGFQGLDLS-WSWANTSWDNYNIGILFKEWRAAVALEA 166 (359)
Q Consensus 112 ~~~~r~~f~~~i~~~l~~~~~DGidiD-~E~~~~~~~~~~~~~ll~~l~~~l~~~~ 166 (359)
+|+.-......+++++++.+-.-|-|| .||..-..+-+....||..||+..-.++
T Consensus 56 ~Pt~L~~l~~~i~~fl~~~~~~vViiD~lEYL~l~NgF~~v~KFL~~LkD~~~~~~ 111 (136)
T PF05763_consen 56 SPTNLHKLLDTIVRFLKENGNGVVIIDGLEYLILENGFESVLKFLASLKDYALLNN 111 (136)
T ss_pred CchhhHHHHHHHHHHHHhCCCcEEEEecHHHHHHHcCHHHHHHHHHHhHHHeeccC
Confidence 577778899999999999665678888 4887655667788899999998775443
No 177
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=24.52 E-value=93 Score=27.23 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCCCCccc-----------ccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHH
Q 036029 90 TTLLSIGGGKNPNYSTY-----------SSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEW 158 (359)
Q Consensus 90 kvllsigg~~~~~~~~~-----------~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l 158 (359)
++++.+||... ...| ..++.+-....-=-+-+.+.+++.+.+-+-|||....+ .+|+.+..+++++
T Consensus 131 ~~~ig~GG~HY--apr~t~~~l~~~~~~GHi~~ky~l~~l~~~~l~~a~~~s~~~~a~id~K~l~~-~~r~~i~~~l~~~ 207 (213)
T PF04414_consen 131 PVAIGFGGGHY--APRFTKLALETEYAFGHIIPKYALDELDEDVLRQAIEKSGADVAIIDWKSLKS-EDRRRIEELLEEL 207 (213)
T ss_dssp EEEEEE-S-TT---HHHHHHHHHCSEEEEEEE-GGGGGG--HHHHHHHHCHCT-SEEEEETTTS-H-HHHHHHHHHHHHH
T ss_pred ceeEEecCccc--chhhhhhhhcCCeEEEeeccCcchhhcCHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHHHHHHHc
Confidence 99999999876 3322 23332221111002334445555688889999987664 7787777777765
No 178
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=24.49 E-value=3.6e+02 Score=22.92 Aligned_cols=46 Identities=11% Similarity=0.033 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCcc---eEEEEeeecCCCcchhhHHHHHHHHHHHHHHHh
Q 036029 120 IDSSIKIARLYGFQ---GLDLSWSWANTSWDNYNIGILFKEWRAAVALEA 166 (359)
Q Consensus 120 ~~~i~~~l~~~~~D---GidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~ 166 (359)
++-.++.++.+++. =+-+|+|.... ..+....+.++++.+.++..+
T Consensus 73 A~~f~~~~~~~~l~~~~~~~lDvE~~~~-~~~~~~~~~~~~f~~~v~~~G 121 (196)
T cd06415 73 ADYFLNSAQQAGLPKGSYLALDYEQGSG-NSKAANTSAILAFMDTIKDAG 121 (196)
T ss_pred HHHHHHHhhhcCCCCCCEEEEEEecCCC-CCHHHHHHHHHHHHHHHHHhC
Confidence 33344555655552 36899997643 234444455555555554433
No 179
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=23.83 E-value=3.2e+02 Score=24.45 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=18.5
Q ss_pred ccHHHHHHHHHHCCCCCCceeee
Q 036029 228 FNTEYGITAWTDEGLSADKLVLG 250 (359)
Q Consensus 228 ~~~~~~~~~~~~~g~~~~Kl~lG 250 (359)
..++..++.+.+.|+++++|++=
T Consensus 150 ~~~~~~i~~~~~~Gi~~~~IilD 172 (258)
T cd00423 150 EFLEERVEAATEAGIPPEDIILD 172 (258)
T ss_pred HHHHHHHHHHHHcCCCHHHEEEe
Confidence 45667777788999999999984
No 180
>PLN02905 beta-amylase
Probab=23.75 E-value=1.5e+02 Score=30.26 Aligned_cols=44 Identities=14% Similarity=0.297 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHcCcceEEEEeeecC------CCcchhhHHHHHHHHHHH
Q 036029 117 KSFIDSSIKIARLYGFQGLDLSWSWAN------TSWDNYNIGILFKEWRAA 161 (359)
Q Consensus 117 ~~f~~~i~~~l~~~~~DGidiD~E~~~------~~~~~~~~~~ll~~l~~~ 161 (359)
+.|.+++ ..|+..|.|||.+|.-|.. ..-++..|.+|++.+|++
T Consensus 286 ~al~a~L-~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~~ 335 (702)
T PLN02905 286 DGLLKQL-RILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVREL 335 (702)
T ss_pred HHHHHHH-HHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHHc
Confidence 4455554 4568899999999986643 135788888888877753
No 181
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=23.24 E-value=1.6e+02 Score=26.31 Aligned_cols=45 Identities=9% Similarity=-0.076 Sum_probs=30.6
Q ss_pred HHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHh
Q 036029 122 SSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEA 166 (359)
Q Consensus 122 ~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~ 166 (359)
..+..+.+.|+++++|....|..-.....-...++++++.++..+
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 58 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENN 58 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 467788889999999998777431111222346788888887664
No 182
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=23.24 E-value=1.3e+02 Score=27.07 Aligned_cols=35 Identities=20% Similarity=0.057 Sum_probs=24.2
Q ss_pred HHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHH
Q 036029 122 SSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEW 158 (359)
Q Consensus 122 ~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l 158 (359)
.+++.+...|||.|-||.|+.. -+......+++.+
T Consensus 31 ~~~e~~a~~G~D~v~iD~EHg~--~~~~~~~~~i~a~ 65 (256)
T PRK10558 31 ITTEVLGLAGFDWLVLDGEHAP--NDVSTFIPQLMAL 65 (256)
T ss_pred HHHHHHHhcCCCEEEEccccCC--CCHHHHHHHHHHH
Confidence 3566777889999999999864 4555555544443
No 183
>PLN02899 alpha-galactosidase
Probab=23.23 E-value=4.3e+02 Score=27.19 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEe
Q 036029 116 RKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARV 181 (359)
Q Consensus 116 r~~f~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~ 181 (359)
-+.|.+++++...+.|+|=|-+|+-++.. .+.+. .+.++++|.+.++ ++.+++..
T Consensus 193 g~a~~~Sla~tfAsWGVDyLKyD~c~~~~-~~~~e----y~~ms~AL~aTGR------PIvySLsp 247 (633)
T PLN02899 193 GKAFLRSLYDQYAEWGVDFVKHDCVFGDD-FDLEE----ITYVSEVLKELDR------PIVYSLSP 247 (633)
T ss_pred hhhhhHHHHHHHHHhCCCEEEEcCCCCCC-CChHH----HHHHHHHHHHhCC------CeEEEecC
Confidence 36899999999999999999999875422 22222 4678889987765 47888863
No 184
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=23.08 E-value=1.4e+02 Score=27.20 Aligned_cols=35 Identities=14% Similarity=0.008 Sum_probs=24.4
Q ss_pred HHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHH
Q 036029 123 SIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWR 159 (359)
Q Consensus 123 i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~ 159 (359)
+++.+...|||.|-||.|+.. -+.+....+++.++
T Consensus 31 ~~E~~a~~GfD~v~iD~EHg~--~~~~~l~~~i~a~~ 65 (267)
T PRK10128 31 MAEIAATSGYDWLLIDGEHAP--NTIQDLYHQLQAIA 65 (267)
T ss_pred HHHHHHHcCCCEEEEccccCC--CCHHHHHHHHHHHH
Confidence 556677889999999999864 45555555555443
No 185
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=23.01 E-value=4.9e+02 Score=22.50 Aligned_cols=65 Identities=9% Similarity=0.100 Sum_probs=41.6
Q ss_pred HHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeecCCCccccccCHhHHhccccE
Q 036029 124 IKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLNW 203 (359)
Q Consensus 124 ~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~~vD~ 203 (359)
+.-+..-|.+.+-+.+|-.. + ..++-+.++..+ ..+.+++-+.+... ++..+...+|.
T Consensus 80 V~~~a~agas~~tfH~E~~q---~-------~~~lv~~ir~~G--------mk~G~alkPgT~Ve----~~~~~~~~~D~ 137 (224)
T KOG3111|consen 80 VDQMAKAGASLFTFHYEATQ---K-------PAELVEKIREKG--------MKVGLALKPGTPVE----DLEPLAEHVDM 137 (224)
T ss_pred HHHHHhcCcceEEEEEeecc---C-------HHHHHHHHHHcC--------CeeeEEeCCCCcHH----HHHHhhccccE
Confidence 34445568999999998532 2 334444455554 57788876544332 24456778999
Q ss_pred EEeeccc
Q 036029 204 VHVITAE 210 (359)
Q Consensus 204 i~vm~yd 210 (359)
+.|||-+
T Consensus 138 vLvMtVe 144 (224)
T KOG3111|consen 138 VLVMTVE 144 (224)
T ss_pred EEEEEec
Confidence 9999985
No 186
>PRK09989 hypothetical protein; Provisional
Probab=22.71 E-value=1.6e+02 Score=26.16 Aligned_cols=36 Identities=11% Similarity=0.255 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHh
Q 036029 121 DSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEA 166 (359)
Q Consensus 121 ~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~ 166 (359)
...++.+++.|||||+|-..+. .+ .+++++.+...+
T Consensus 18 ~~~l~~~~~~Gfd~VEl~~~~~---~~-------~~~~~~~l~~~G 53 (258)
T PRK09989 18 IERFAAARKAGFDAVEFLFPYD---YS-------TLQIQKQLEQNH 53 (258)
T ss_pred HHHHHHHHHcCCCEEEECCccc---CC-------HHHHHHHHHHcC
Confidence 4677889999999999954221 11 567888888775
No 187
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.19 E-value=4.4e+02 Score=21.58 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHhcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEE
Q 036029 72 EKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDL 137 (359)
Q Consensus 72 ~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidi 137 (359)
...+..+++.+++.+|+.++++..--... ..... ...+....+.+.+.+.+..+++++.=||+
T Consensus 92 ~~~l~~li~~i~~~~~~~~iil~t~~p~~--~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~vD~ 154 (188)
T cd01827 92 KKDYETMIDSFQALPSKPKIYICYPIPAY--YGDGG-FINDNIIKKEIQPMIDKIAKKLNLKLIDL 154 (188)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEeCCccc--ccCCC-ccchHHHHHHHHHHHHHHHHHcCCcEEEc
Confidence 35677888888888888888765321111 11111 12233444566677777778877655554
No 188
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=22.07 E-value=2.1e+02 Score=28.84 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=35.2
Q ss_pred ChhhHHHHHHHHHHHHHHcCcceEEEEe-eecC----C-CcchhhHHHHHHHHHHHHHHH
Q 036029 112 NPSSRKSFIDSSIKIARLYGFQGLDLSW-SWAN----T-SWDNYNIGILFKEWRAAVALE 165 (359)
Q Consensus 112 ~~~~r~~f~~~i~~~l~~~~~DGidiD~-E~~~----~-~~~~~~~~~ll~~l~~~l~~~ 165 (359)
|++.|+.+++.+..|++ .|+||+-||- .+.. . ..+...-..|+++++..++..
T Consensus 172 np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~ 230 (539)
T TIGR02456 172 NPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDRE 230 (539)
T ss_pred CHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHh
Confidence 57777888877777776 8999999994 2221 0 011222346888888888765
No 189
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=21.66 E-value=2.3e+02 Score=27.16 Aligned_cols=60 Identities=5% Similarity=0.011 Sum_probs=35.0
Q ss_pred CcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEee--ecCCCcchhhHHHHHHHHHHHHHHHhh
Q 036029 103 YSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWS--WANTSWDNYNIGILFKEWRAAVALEAR 167 (359)
Q Consensus 103 ~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E--~~~~~~~~~~~~~ll~~l~~~l~~~~~ 167 (359)
...|.......... ...+..+.+.|||||++... +|.. .+...-..-+++++..++..+.
T Consensus 21 ~~~~g~~~~~~~~~----~e~i~~la~~GfdgVE~~~~dl~P~~-~~~~e~~~~~~~lk~~L~~~GL 82 (382)
T TIGR02631 21 RDPFGDATRTALDP----VEAVHKLAELGAYGVTFHDDDLIPFG-APPQERDQIVRRFKKALDETGL 82 (382)
T ss_pred CCCCCCCCCCCcCH----HHHHHHHHHhCCCEEEecccccCCCC-CChhHHHHHHHHHHHHHHHhCC
Confidence 45565544432211 24556688899999999743 2222 1111123457889999988863
No 190
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=21.38 E-value=5.5e+02 Score=25.20 Aligned_cols=39 Identities=8% Similarity=0.203 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHH
Q 036029 120 IDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEW 158 (359)
Q Consensus 120 ~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l 158 (359)
+...++.+++.|++.|.+|+-+....+..+.+...++.+
T Consensus 190 ~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~ 228 (453)
T PRK13347 190 VARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKV 228 (453)
T ss_pred HHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHH
Confidence 446677788888887777775543324444444444443
No 191
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=21.38 E-value=2.5e+02 Score=22.06 Aligned_cols=71 Identities=11% Similarity=0.171 Sum_probs=46.3
Q ss_pred CceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHH
Q 036029 88 SITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVAL 164 (359)
Q Consensus 88 ~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~ 164 (359)
|..=++-+|+..+ .=.+. -.|.. -++=+..+.+.|++.|++.=-|.+.+... .+.+.|.+.++++.+.++.
T Consensus 52 GADGV~V~gC~~g--~Ch~~--~Gn~~-a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~-~~~~~fa~~~~~f~~~i~~ 122 (124)
T PF02662_consen 52 GADGVLVAGCHPG--DCHYR--EGNYR-AEKRVERLKKLLEELGIEPERVRLYWISA-PEGKRFAEIVNEFTERIKE 122 (124)
T ss_pred CCCEEEEeCCCCC--CCCcc--hhhHH-HHHHHHHHHHHHHHcCCChhHeEEEEeCc-ccHHHHHHHHHHHHHHHHH
Confidence 4555566676543 22222 12222 23345677788888898877777777664 7888999999999888764
No 192
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=21.34 E-value=80 Score=22.64 Aligned_cols=28 Identities=14% Similarity=0.354 Sum_probs=24.7
Q ss_pred cccccCChhhHHHHHHHHHHHHHHcCcc
Q 036029 106 YSSMASNPSSRKSFIDSSIKIARLYGFQ 133 (359)
Q Consensus 106 ~~~~~~~~~~r~~f~~~i~~~l~~~~~D 133 (359)
|.....+++.|++|.++=-.++++||+.
T Consensus 9 ~~~~~~~~~~re~f~~dp~a~~~~~~Lt 36 (77)
T cd07321 9 LEQLLVKPEVKERFKADPEAVLAEYGLT 36 (77)
T ss_pred HHHHhcCHHHHHHHHhCHHHHHHHcCCC
Confidence 5566778999999999999999999876
No 193
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=21.28 E-value=4.4e+02 Score=24.06 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=43.0
Q ss_pred HHHHhcCCC-ceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEE
Q 036029 80 DTVKKKNPS-ITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDL 137 (359)
Q Consensus 80 ~~lk~~~~~-~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidi 137 (359)
+.++...+. ..+++.=.||-. +...+.......++++.|+++++.-|++-|+|-..|
T Consensus 222 e~vqsa~g~~k~~~v~EtGWPS-~G~~~G~a~pS~anq~~~~~~i~~~~~~~G~d~fvf 279 (305)
T COG5309 222 ERVQSACGTKKTVWVTETGWPS-DGRTYGSAVPSVANQKIAVQEILNALRSCGYDVFVF 279 (305)
T ss_pred HHHHHhcCCCccEEEeeccCCC-CCCccCCcCCChhHHHHHHHHHHhhhhccCccEEEe
Confidence 345554444 677788788875 455677777788999999999999999998875544
No 194
>PRK00865 glutamate racemase; Provisional
Probab=21.14 E-value=3.4e+02 Score=24.35 Aligned_cols=66 Identities=9% Similarity=0.122 Sum_probs=46.9
Q ss_pred CccchHHHHHHHHHHHhcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEee
Q 036029 68 SPSDEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWS 140 (359)
Q Consensus 68 ~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E 140 (359)
.|+.-.+++-+ +.+++..|+..++-- | ++..+.--..+.+...+++..++++|.+.|.|.|-|-+-
T Consensus 11 fDSGiGGLtvl-~~i~~~lp~~~~iY~-~-----D~~~~PYG~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCN 76 (261)
T PRK00865 11 FDSGVGGLTVL-REIRRLLPDEHIIYV-G-----DTARFPYGEKSEEEIRERTLEIVEFLLEYGVKMLVIACN 76 (261)
T ss_pred EECCccHHHHH-HHHHHHCCCCCEEEE-e-----cCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 34434455433 468888888865532 3 244555556778888899999999999999999999874
No 195
>PRK08005 epimerase; Validated
Probab=21.12 E-value=4.1e+02 Score=23.12 Aligned_cols=76 Identities=12% Similarity=0.046 Sum_probs=45.4
Q ss_pred cccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeecCC
Q 036029 106 YSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSP 185 (359)
Q Consensus 106 ~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~ 185 (359)
.+-|+.+++ +|+ ..+.+.|.|-|-+.+|-. .....+++.+|+. + ....+++-+.+
T Consensus 63 vHLMv~~P~---~~i----~~~~~~gad~It~H~Ea~------~~~~~~l~~Ik~~----G--------~k~GlAlnP~T 117 (210)
T PRK08005 63 FHLMVSSPQ---RWL----PWLAAIRPGWIFIHAESV------QNPSEILADIRAI----G--------AKAGLALNPAT 117 (210)
T ss_pred EEeccCCHH---HHH----HHHHHhCCCEEEEcccCc------cCHHHHHHHHHHc----C--------CcEEEEECCCC
Confidence 345555553 344 445557999999999932 1234455555443 3 24666665443
Q ss_pred CccccccCHhHHhccccEEEeeccc
Q 036029 186 YSTIGAYSIDSIRQYLNWVHVITAE 210 (359)
Q Consensus 186 ~~~~~~~~~~~l~~~vD~i~vm~yd 210 (359)
... .+..+.+.+|+|.+|+-+
T Consensus 118 p~~----~i~~~l~~vD~VlvMsV~ 138 (210)
T PRK08005 118 PLL----PYRYLALQLDALMIMTSE 138 (210)
T ss_pred CHH----HHHHHHHhcCEEEEEEec
Confidence 222 234567789999999986
No 196
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=21.07 E-value=7.8e+02 Score=23.98 Aligned_cols=235 Identities=12% Similarity=0.078 Sum_probs=123.0
Q ss_pred chHHHHHHHHHHHhc--CCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeec-CC---
Q 036029 71 DEKQFSNFTDTVKKK--NPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWA-NT--- 144 (359)
Q Consensus 71 ~~~~~~~~~~~lk~~--~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~-~~--- 144 (359)
++..|..++..+..+ .|.= .+-+||... .+..|..+- ..+..++-...+...++. ||+=|.||.--. .+
T Consensus 59 tP~dF~~~V~~iA~~~gf~~~--~iiLggDHl-GPn~Wq~lp-a~eAM~~A~~li~ayV~A-GF~kIHLD~Sm~ca~d~~ 133 (420)
T TIGR02810 59 TPADFRDFVETIADRIGFPRD--RLILGGDHL-GPNPWQHLP-ADEAMAKAAALVDAYVEA-GFTKIHLDASMGCAGDPA 133 (420)
T ss_pred CHHHHHHHHHHHHHHcCCChh--cEEeecCCC-CCccccCCC-HHHHHHHHHHHHHHHHHc-CCceEEecCCCCccCCCc
Confidence 456677777655443 3333 444566544 355565322 344555555555555554 788888876311 00
Q ss_pred -----------------------------------------------------CcchhhHHHHHHHHHHHHHHHhhcCCC
Q 036029 145 -----------------------------------------------------SWDNYNIGILFKEWRAAVALEARNNSS 171 (359)
Q Consensus 145 -----------------------------------------------------~~~~~~~~~ll~~l~~~l~~~~~~~~~ 171 (359)
....+.+..+|..++.+|.+.+. ..
T Consensus 134 ~L~d~~vAeRaa~L~~~aE~~~~~~~~~~~~vYvIGTEvP~pGGa~~~~~~~~vTs~e~~~~ti~~h~~af~~~GL--~~ 211 (420)
T TIGR02810 134 PLDDATVAERAARLCAVAEAAATDRRGETKPVYVIGTEVPVPGGALEALQTLAVTTPEAARATLRAHRKAFAARGL--ED 211 (420)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeccccCCCCchhhhccccCCCCHHHHHHHHHHHHHHHHHcCc--hh
Confidence 02345677888888888877754 11
Q ss_pred CceEEEEEEeecCCCcccc---ccC---HhHHhccccEEEeecccccCCCCCCCCCCCCcccccHHHHHHHHHHCCCCCC
Q 036029 172 QSQLILTARVAYSPYSTIG---AYS---IDSIRQYLNWVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAWTDEGLSAD 245 (359)
Q Consensus 172 ~~~~~ls~~~~~~~~~~~~---~~~---~~~l~~~vD~i~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~~~~g~~~~ 245 (359)
...-.+-+++.+...+... .|+ ...|.+.++.+-.|.+.-|+.. +....++..++.-|+..-
T Consensus 212 aw~rvi~~VVQpGvef~~~~V~~y~~~~A~~Ls~~~~~~~~lvfEaHSTD------------YQt~~al~~lv~dgfaiL 279 (420)
T TIGR02810 212 AWPRVIALVVQPGVEFDHHNVIHYQPERAQALSQVIDNTPGLVFEAHSTD------------YQTPAALRALVRDHFAIL 279 (420)
T ss_pred hhccceEEEecCCeeECCCceeecCHHHHHHHHHHHHhCCCceeecCCcc------------CCCHHHHHHHHhcCceee
Confidence 1111455555544322111 243 3445555665555666544431 356777888888888888
Q ss_pred ceeeecccceee--eeecCCCCCCCCcccCCCCCCCCccccHHHHHHhh---hhCCCCccEEEeCCe-----eeeEEEeC
Q 036029 246 KLVLGLPCYGYA--WTLVKPEDNGIGAAATGPALSDIGFVTYKEIKNYI---KSYGPNVPVMYNSTY-----VMNYCSIG 315 (359)
Q Consensus 246 Kl~lGlp~yG~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~---~~~~~~~~~~~d~~~-----~~~y~~~~ 315 (359)
|+--++.|-=|. |.+..-...-.+ . ...-...+..+.. ++.. |+.+|..+. ...|.+++
T Consensus 280 KVGPalTfalreAlfaL~~ie~el~~-----~----~~~s~l~~~le~~M~~~p~~--W~k~y~g~~~~~~l~r~ys~sD 348 (420)
T TIGR02810 280 KVGPALTFALREALFALDQIEDELVP-----A----PARSGLRAVIERVMLAEPGY--WKGYYHGDDNEQRLDRRYSYSD 348 (420)
T ss_pred eechhHhHHHHHHHHHHHHHHHHhcC-----c----cccchHHHHHHHHHHhCchh--hhhhcCCCHHHHHHHHHhhhhh
Confidence 887777554322 222110000000 0 0111233433322 2233 766665544 23455577
Q ss_pred CEEEEEcCHHHHHHHHHHHH
Q 036029 316 KIWFGFDDVEAVRMKVAYAK 335 (359)
Q Consensus 316 ~~~i~ydd~~S~~~K~~~~~ 335 (359)
+..++|.+++-..+.-++..
T Consensus 349 RiRYyw~~p~v~~a~~~L~~ 368 (420)
T TIGR02810 349 RIRYYWPHPRIAAAVETLMA 368 (420)
T ss_pred ceEEecCCHHHHHHHHHHHH
Confidence 78888999987777666553
No 197
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=20.69 E-value=6.2e+02 Score=22.68 Aligned_cols=98 Identities=12% Similarity=-0.012 Sum_probs=50.4
Q ss_pred HHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeecCCCccccccCHhHHhcccc
Q 036029 123 SIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLN 202 (359)
Q Consensus 123 i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~~vD 202 (359)
-++.+++.|.||+-|..+-+ .-..++.+.++..+. .+...+.+.+ ... .+..+.+.+|
T Consensus 107 f~~~~~~aGvdgviipDlp~----------ee~~~~~~~~~~~gl--------~~i~lv~P~T--~~e--ri~~i~~~~~ 164 (256)
T TIGR00262 107 FYAKCKEVGVDGVLVADLPL----------EESGDLVEAAKKHGV--------KPIFLVAPNA--DDE--RLKQIAEKSQ 164 (256)
T ss_pred HHHHHHHcCCCEEEECCCCh----------HHHHHHHHHHHHCCC--------cEEEEECCCC--CHH--HHHHHHHhCC
Confidence 34556778999998886521 123445555555542 3333333222 111 2456777787
Q ss_pred -EEEeecccccCCCCCCCCCCCCcccccHHHHHHHHHHCCCCCCceeeec
Q 036029 203 -WVHVITAEYSRPMWTNHTSAPAALVFNTEYGITAWTDEGLSADKLVLGL 251 (359)
Q Consensus 203 -~i~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~~~~g~~~~Kl~lGl 251 (359)
++.+|+.. | .++..+.+...+..-++...+. ...+|++|.
T Consensus 165 gfiy~vs~~--G-----~TG~~~~~~~~~~~~i~~lr~~--~~~pi~vgf 205 (256)
T TIGR00262 165 GFVYLVSRA--G-----VTGARNRAASALNELVKRLKAY--SAKPVLVGF 205 (256)
T ss_pred CCEEEEECC--C-----CCCCcccCChhHHHHHHHHHhh--cCCCEEEeC
Confidence 88888853 2 2232222222455556655543 123466554
No 198
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=20.60 E-value=1.7e+02 Score=26.29 Aligned_cols=33 Identities=21% Similarity=0.093 Sum_probs=23.0
Q ss_pred HHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHH
Q 036029 123 SIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKE 157 (359)
Q Consensus 123 i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~ 157 (359)
+++.+...|||.|-||.|+.. -+.+....+++.
T Consensus 25 ~~e~~a~~G~D~v~iD~EHg~--~~~~~~~~~~~a 57 (249)
T TIGR03239 25 TTEVLGLAGFDWLLLDGEHAP--NDVLTFIPQLMA 57 (249)
T ss_pred HHHHHHhcCCCEEEEecccCC--CCHHHHHHHHHH
Confidence 556677889999999999864 344444444444
No 199
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=20.60 E-value=3.6e+02 Score=23.31 Aligned_cols=78 Identities=8% Similarity=-0.088 Sum_probs=41.3
Q ss_pred HHHHHHHcCcceEEEEeeecCCCcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeecCCCccccccCHhHHhcccc
Q 036029 123 SIKIARLYGFQGLDLSWSWANTSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYSIDSIRQYLN 202 (359)
Q Consensus 123 i~~~l~~~~~DGidiD~E~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~~vD 202 (359)
.++.+...|+|-|-||+|....+.+++.=...++++-..+..... . ...+-+.++..... ...-|+..+..-+|
T Consensus 13 ~~~~a~~~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~--~---~~~~~VRvn~~~~~-~~~~Dl~~l~~g~~ 86 (221)
T PF03328_consen 13 MLEKAAASGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARA--A---GSEIIVRVNSLDSP-HIERDLEALDAGAD 86 (221)
T ss_dssp HHHHHHTTCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTT--S---SSEEEEE-SSTTCH-HHHHHHHHHHTTSS
T ss_pred HHHHHHhcCCCEEEEeCcccCCcccchhhHHHHHHHHHhhccccc--c---cccceecCCCCCcc-hhhhhhhhcccCCC
Confidence 345566789999999999877655555444455554444443211 0 12466666533211 11112334555677
Q ss_pred EEEe
Q 036029 203 WVHV 206 (359)
Q Consensus 203 ~i~v 206 (359)
.|.+
T Consensus 87 gI~l 90 (221)
T PF03328_consen 87 GIVL 90 (221)
T ss_dssp EEEE
T ss_pred eeec
Confidence 6654
No 200
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=20.58 E-value=2.7e+02 Score=25.69 Aligned_cols=88 Identities=14% Similarity=0.120 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHcCcceEEEEeeecC--CCcchhhHHHHHHHHHHHHHHHhhcCCCCceEEEEEEeecCCCccccccC
Q 036029 116 RKSFIDSSIKIARLYGFQGLDLSWSWAN--TSWDNYNIGILFKEWRAAVALEARNNSSQSQLILTARVAYSPYSTIGAYS 193 (359)
Q Consensus 116 r~~f~~~i~~~l~~~~~DGidiD~E~~~--~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~ 193 (359)
.+-|-.++..+++... .| +|-.-.|. +.++.....+++++.++.+..++..... ...+.+.+.. ....+.
T Consensus 119 p~~f~~QlrAilra~~-~g-~l~Im~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~~--~~~vG~MiEv----Psaal~ 190 (293)
T PF02896_consen 119 PELFRTQLRAILRAAA-EG-NLRIMFPMVSTVEEVREAKEILEEVKEELREEGIPFDP--DLPVGIMIEV----PSAALM 190 (293)
T ss_dssp HHHHHHHHHHHHHHHH-HS-EEEEEESS--SHHHHHHHHHHHHHHHHHHHHHTCTTGT--T-EEEEEE-S----HHHHHT
T ss_pred hhhHHHHHHHHHHHHh-hc-CCEEEecCCCcHHHHHHHHHHHHHHHHHHHHhccCccc--cceEEEEech----hHHHHH
Confidence 4567788888887654 22 66666665 3355567778888888888766421111 2455555541 222356
Q ss_pred HhHHhccccEEEeecccc
Q 036029 194 IDSIRQYLNWVHVITAEY 211 (359)
Q Consensus 194 ~~~l~~~vD~i~vm~yd~ 211 (359)
...+.+.+||+.|-|=|+
T Consensus 191 ~~~~~~~~DF~SIGtNDL 208 (293)
T PF02896_consen 191 ADEFAKEVDFFSIGTNDL 208 (293)
T ss_dssp HHHHHTTSSEEEEEHHHH
T ss_pred HHHHHHHCCEEEEChhHH
Confidence 678999999999988886
No 201
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=20.48 E-value=5.9e+02 Score=22.40 Aligned_cols=55 Identities=5% Similarity=0.015 Sum_probs=34.5
Q ss_pred CceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEEeeecCCC-----------cchhhHHHHHH
Q 036029 88 SITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLSWSWANTS-----------WDNYNIGILFK 156 (359)
Q Consensus 88 ~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~E~~~~~-----------~~~~~~~~ll~ 156 (359)
+..+.+.|.|.+ + .....++..+.++ .|+|||+...|... .+.+...++++
T Consensus 72 ~~p~~vqi~g~~-------------~----~~~~~aa~~~~~~-~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~ 133 (233)
T cd02911 72 NVLVGVNVRSSS-------------L----EPLLNAAALVAKN-AAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIK 133 (233)
T ss_pred CCeEEEEecCCC-------------H----HHHHHHHHHHhhc-CCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHH
Confidence 567888887743 2 2223445566665 59999999876520 24555666777
Q ss_pred HHHH
Q 036029 157 EWRA 160 (359)
Q Consensus 157 ~l~~ 160 (359)
++++
T Consensus 134 avr~ 137 (233)
T cd02911 134 ALKE 137 (233)
T ss_pred HHHh
Confidence 7765
No 202
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=20.47 E-value=3.2e+02 Score=23.17 Aligned_cols=41 Identities=7% Similarity=-0.014 Sum_probs=21.3
Q ss_pred HHHHHHHHHcCcc---eEEEEeeecCCCcchhhHHHHHHHHHHHHHH
Q 036029 121 DSSIKIARLYGFQ---GLDLSWSWANTSWDNYNIGILFKEWRAAVAL 164 (359)
Q Consensus 121 ~~i~~~l~~~~~D---GidiD~E~~~~~~~~~~~~~ll~~l~~~l~~ 164 (359)
+..++.++.++++ -+-||+|.... .....+.++++.+.++.
T Consensus 77 ~~f~~~~~~~~~~~~~~~~lD~E~~~~---~~~~~~~~~~F~~~v~~ 120 (192)
T cd06522 77 RYFANTAKSLGLSKNTVMVADMEDSSS---SGNATANVNAFWQTMKA 120 (192)
T ss_pred HHHHHHHHHcCCCCCCceEEEeecCCC---cchHHHHHHHHHHHHHH
Confidence 3334445667664 25789997643 23334444444444443
No 203
>PF09839 DUF2066: Uncharacterized protein conserved in bacteria (DUF2066); InterPro: IPR018642 This entry represents a family of prokaryotic proteins with no known function.
Probab=20.05 E-value=3.8e+02 Score=23.58 Aligned_cols=77 Identities=13% Similarity=0.108 Sum_probs=47.7
Q ss_pred EEEeEEEeCCCcE-EecCccchHHHHHHHHHHHhcCCCceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHc
Q 036029 52 MCGFADVNSTSYE-LSLSPSDEKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLY 130 (359)
Q Consensus 52 i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~ 130 (359)
++.++..+.+++. +...+.+......+....+.+ ++.+++-++.-.+ ...++-.+....|...|.+..++|
T Consensus 103 vLvWl~~~~~~~r~ll~~~~~~~~~~~l~~~a~~r--Glpl~~Pl~Dl~D------~~~v~~~dvw~~f~~~i~~aS~RY 174 (234)
T PF09839_consen 103 VLVWLVVDDGGGRRLLWEDSDPWLRAWLRQAAKRR--GLPLVLPLMDLED------QMAVSASDVWGGFEEPIAAASQRY 174 (234)
T ss_pred EEEEEEEecCCCceEeeCCCCHHHHHHHHHHHHhC--CCceeecCCchhh------hhcCCHHHHhccCHHHHHHHHhcc
Confidence 3444555554444 333344444444554444444 8999998876543 122334566778999999999999
Q ss_pred CcceEE
Q 036029 131 GFQGLD 136 (359)
Q Consensus 131 ~~DGid 136 (359)
+-|.|-
T Consensus 175 ~ad~vl 180 (234)
T PF09839_consen 175 GADQVL 180 (234)
T ss_pred CCCcEE
Confidence 988773
No 204
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=20.02 E-value=94 Score=28.10 Aligned_cols=93 Identities=19% Similarity=0.252 Sum_probs=54.8
Q ss_pred CceEEEEEcCCCCCCCcccccccCChhhHHHHHHHHHHHHHHcCcceEEEE-eeecCCC----------cchhhHHHHHH
Q 036029 88 SITTLLSIGGGKNPNYSTYSSMASNPSSRKSFIDSSIKIARLYGFQGLDLS-WSWANTS----------WDNYNIGILFK 156 (359)
Q Consensus 88 ~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD-~E~~~~~----------~~~~~~~~ll~ 156 (359)
+.+-++-||.+.+.-+.....+... ............-|++.||+=+++| |+....+ +-...=..||+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~-v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~~LL~ 172 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE-VYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPLTLLR 172 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce-EEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhccCCHHHHHH
Confidence 4566888886544112222222211 1112334556777888899877665 3321111 11223358999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEEEeecCCCcc
Q 036029 157 EWRAAVALEARNNSSQSQLILTARVAYSPYST 188 (359)
Q Consensus 157 ~l~~~l~~~~~~~~~~~~~~ls~~~~~~~~~~ 188 (359)
+||.++++++. ++|.+++|..|+..
T Consensus 173 ~i~~~l~p~G~-------lilAvVlP~~pyVE 197 (265)
T PF05219_consen 173 DIRRALKPNGR-------LILAVVLPFRPYVE 197 (265)
T ss_pred HHHHHhCCCCE-------EEEEEEecccccEE
Confidence 99999998776 99999999776544
No 205
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=20.01 E-value=3.8e+02 Score=22.02 Aligned_cols=64 Identities=13% Similarity=0.251 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHhcCCCceEEEEEcCCCCCCCcccc--------cccCChhhHHHHHHHHHHHHHHcCcceEEE
Q 036029 72 EKQFSNFTDTVKKKNPSITTLLSIGGGKNPNYSTYS--------SMASNPSSRKSFIDSSIKIARLYGFQGLDL 137 (359)
Q Consensus 72 ~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~--------~~~~~~~~r~~f~~~i~~~l~~~~~DGidi 137 (359)
...+..+++.+++++|+.++++.---... ...+. ......+..+.+.+.+.++.+++++.=||+
T Consensus 91 ~~~~~~~i~~~~~~~~~~~ii~~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~iD~ 162 (199)
T cd01838 91 KENLRKIVSHLKSLSPKTKVILITPPPVD--EEAWEKSLEDGGSQPGRTNELLKQYAEACVEVAEELGVPVIDL 162 (199)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEeCCCCCC--HHHHhhhhccccCCccccHHHHHHHHHHHHHHHHHhCCcEEEH
Confidence 34567777788887889998877322211 11111 111223344567777777778877555544
Done!