Query 036031
Match_columns 541
No_of_seqs 190 out of 387
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 14:41:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.6 1.3E-14 4.6E-19 150.5 12.9 295 127-452 18-382 (408)
2 3zy2_A Putative GDP-fucose pro 99.3 5.9E-11 2E-15 122.7 16.1 272 129-450 6-348 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 97.9 0.0013 4.5E-08 71.4 21.8 254 131-450 145-421 (526)
4 2hhc_A NODZ, nodulation fucosy 97.7 0.00049 1.7E-08 68.9 14.8 265 130-443 3-294 (330)
5 3l32_A Phosphoprotein; antipar 30.8 25 0.00084 26.5 2.0 26 269-294 2-27 (45)
6 2ct9_A Calcium-binding protein 29.6 55 0.0019 29.1 4.6 117 350-487 9-142 (208)
7 1s6c_A KV4 potassium channel-i 21.9 9.1 0.00031 33.2 -2.1 53 433-488 68-122 (183)
8 1l2m_A REP protein; A+B fold, 20.1 93 0.0032 27.6 4.0 29 347-376 17-45 (118)
9 2ftp_A Hydroxymethylglutaryl-C 15.9 2.2E+02 0.0075 28.0 6.1 51 310-366 210-268 (302)
10 2eqr_A N-COR1, N-COR, nuclear 15.5 72 0.0025 24.5 2.0 21 343-363 8-28 (61)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.56 E-value=1.3e-14 Score=150.47 Aligned_cols=295 Identities=18% Similarity=0.260 Sum_probs=168.7
Q ss_pred CCCCCceEEEEec-C-chhhHHHHHHHHHHHHHHhcCe----EEeecccCCcccCCC------CCCCcccchHHHHHhcc
Q 036031 127 PAEPRGYLLVHTN-G-GLNQMRAGICDMVAVARIINAT----LVVPELDKRSFWQDS------SNFSDVFDEDHFINSLA 194 (541)
Q Consensus 127 ~~~snGyL~V~~n-G-GLNQqR~~IcdaVavAriLNAT----LVlP~L~~~s~W~D~------S~F~dIFDvdhFI~sL~ 194 (541)
+...++||+-..| | |.|+||...-.|.++|+.||.| ||||-...---|.-. -+|+++||++++.
T Consensus 18 ~~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L~---- 93 (408)
T 4ap5_A 18 AASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLN---- 93 (408)
T ss_dssp --CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHHH----
T ss_pred CccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHHH----
Confidence 4578999999654 5 8999999999999999999999 999976533345322 3799999998753
Q ss_pred ccceEeccCchhhhhhh--hh---c---cc-ccc-----c-----------------cCccch-----------------
Q 036031 195 NDVKVIKKVPKELSTAA--RA---V---KH-FRS-----W-----------------SGMDYY----------------- 226 (541)
Q Consensus 195 ~dVrIVk~LP~~~~~~~--~~---~---k~-~~~-----w-----------------s~~~yy----------------- 226 (541)
..|+|+.- +++.... .. + +. ... | ....++
T Consensus 94 ~~vpVI~m--eeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c 171 (408)
T 4ap5_A 94 KNIPVIEY--EQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSC 171 (408)
T ss_dssp TTSCEEEH--HHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEE
T ss_pred hhCCeeEH--HHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCcee
Confidence 45566622 2211100 00 0 00 000 0 000000
Q ss_pred ------hhhhhcccccc---cEEEEeecCCcccCCCCChhhhhhhhhhccccccccHHHHHHHHHHHHHHhhcCCeeEee
Q 036031 227 ------EGEIASMWEDY---QIIRAAKSDSRLANNNLPLDIQKLRCRACYEALRFAPQIEAMGKLLVDRMRSYGPYIALH 297 (541)
Q Consensus 227 ------~~~ilP~l~k~---~VI~l~~~~~rLa~~~lP~eiQrLRCrvnf~ALrF~p~I~~lg~~LV~RLr~~G~fiALH 297 (541)
...+.|.+.+. .-+-+..+..-|+...-..+...+ ...|+|.+.|.++|+..++..- .++|+++|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~-----~r~l~~s~~l~~~a~~fi~~~L-~~~~~~~h 245 (408)
T 4ap5_A 172 LSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDT-----RRSMVFARHLREVGDEFRSRHL-NSTDDADR 245 (408)
T ss_dssp EEECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHH-----HHTCCBCHHHHHHHHHHHHHHH-CCCTTTTT
T ss_pred EEEeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhH-----HHHhhhhHHHHHHHHHHHHHHh-Ccccceee
Confidence 00011111111 111111111222211111122222 1369999999999999888665 36899999
Q ss_pred ccchhhhhhhcCCCCCCChhhHHHHHHHHhcccccccccCChHhhhcCC-CCCCCHHHHHHHHHhcCCCCCccEEEeecc
Q 036031 298 LRYEKDMLAFSGCTHDLSPVEADELRTIRENTVHWKVKEIDSKEQRSKG-YCPLTPKEVGIFLTALGYPSSTPIYIAAGE 376 (541)
Q Consensus 298 LR~E~DMLAfsgC~~g~~~~E~~eL~~~R~~~~~wk~k~i~~~~~R~~G-~CPLTPeEvgl~LralGf~~~T~IYlA~Ge 376 (541)
+|...|+... |.......- --+.-.||+... -..... .||-.++-+..+.+.|-=-+-+.||||+-+
T Consensus 246 ~r~~~dw~~~--~~~~~~~~~------~~y~~~H~Rr~d----~~~~~~~~~ps~~~~~~~i~~~~~~~~~~~VyiATD~ 313 (408)
T 4ap5_A 246 IPFQEDWMKM--KVKLGSALG------GPYLGVHLRRKD----FIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDA 313 (408)
T ss_dssp CCCCSSGGGC--CCCTTCBCC------EEEEEEEECCTT----TTTTTCSSSCCHHHHHHHHHHHHHHHTCSCEEEEECC
T ss_pred cccchhHhhh--hcccccccC------CCcccccccccc----chhhhhccCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 9999888764 443211000 000112332211 011112 233333333333333322244589999865
Q ss_pred ccCCcccchhHHHhcCCccccccCCCcccccccccchhhhhhhheeeecCCceeeeCCCCchhhhhhHhhhhcCCC
Q 036031 377 IYGGDARMADLQTRYPIMMSKEKLASVEELEPCVNHASQMAALDYIVSVESDVFIPSYSGNMARAVEGHRRFLGHR 452 (541)
Q Consensus 377 iyGG~~~l~pLr~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDYiVcl~SDVFV~t~~GNfa~~V~GhR~y~G~~ 452 (541)
. ++.+..|++.+|.++.-.. ..+++..+ .....|.||-+||.+||+||+|..++|+..|.=.|.+.|+.
T Consensus 314 ~---~~~~~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~ 382 (408)
T 4ap5_A 314 V---RKEYEELKKLLPEMVRFEP--TWEELELY--KDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLD 382 (408)
T ss_dssp C---HHHHHHHHHHCTTEECCCC--CHHHHHHH--HHHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBC
T ss_pred c---hhHHHHHHHhCCCcEEecC--cchhhhcc--CcchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCC
Confidence 3 4457889999998763221 23344443 23467899999999999999999999999999999999976
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.27 E-value=5.9e-11 Score=122.71 Aligned_cols=272 Identities=18% Similarity=0.352 Sum_probs=165.5
Q ss_pred CCCceEEE-EecCchhhHHHHHHHHHHHHHHhcCeEEeecccCCcccCCC--CCCCcccchHHHHHhccccceEeccCch
Q 036031 129 EPRGYLLV-HTNGGLNQMRAGICDMVAVARIINATLVVPELDKRSFWQDS--SNFSDVFDEDHFINSLANDVKVIKKVPK 205 (541)
Q Consensus 129 ~snGyL~V-~~nGGLNQqR~~IcdaVavAriLNATLVlP~L~~~s~W~D~--S~F~dIFDvdhFI~sL~~dVrIVk~LP~ 205 (541)
.+||||+- -|.|-..||-....-+.+.|+.||.|||||-+-.-.. +.+ -.|++.|+++. |+..-|||.- +
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~-~~~~~vpf~~yF~v~~----l~~yhrvi~m--e 78 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKH-PETKMIPFEFLFQVGT----VAKYTRVVTM--Q 78 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSS-SSCEEECHHHHBCHHH----HTTTSCEECH--H
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccC-Ccccccchhheeecch----hhhhceeeeH--H
Confidence 46999999 9999999999999999999999999999997642111 111 26888898876 3334455521 1
Q ss_pred hhhhh-----------------------h-----h-hcc---cc-ccc--cCccchhhh---------------hhccc-
Q 036031 206 ELSTA-----------------------A-----R-AVK---HF-RSW--SGMDYYEGE---------------IASMW- 234 (541)
Q Consensus 206 ~~~~~-----------------------~-----~-~~k---~~-~~w--s~~~yy~~~---------------ilP~l- 234 (541)
+++.. . . ..| ++ .-| -..+|...+ ....+
T Consensus 79 ~Fm~~lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W~ 158 (362)
T 3zy2_A 79 EFTKKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKWL 158 (362)
T ss_dssp HHHHHTHHHHSCGGGCEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CHH
T ss_pred HHHHHhccccCCcccceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHHHH
Confidence 11100 0 0 011 00 112 111221111 11111
Q ss_pred -----ccccEEEEeecCCcccCCCCChhhhhhhhhhccccccccHHHHHHHHHHHHHHhhcCCeeEeeccchhhhhhhcC
Q 036031 235 -----EDYQIIRAAKSDSRLANNNLPLDIQKLRCRACYEALRFAPQIEAMGKLLVDRMRSYGPYIALHLRYEKDMLAFSG 309 (541)
Q Consensus 235 -----~k~~VI~l~~~~~rLa~~~lP~eiQrLRCrvnf~ALrF~p~I~~lg~~LV~RLr~~G~fiALHLR~E~DMLAfsg 309 (541)
.+|-|+.|++.-..---..-.-.||| -|+++++|.+.|++.++.--. .||||+|||-=.|+.-.
T Consensus 159 ~~~p~~~~pVlAf~gaPa~FPv~~e~r~Lqk--------Ym~WS~~i~~~a~~fI~~~L~-rpyVgIHLR~G~DW~~a-- 227 (362)
T 3zy2_A 159 EKFPSEEYPVLAFSSAPAPFPSKGKVWSIQK--------YLRWSSRITEQAKKFISANLA-KPFVAVHLRNDADWVRV-- 227 (362)
T ss_dssp HHSCTTTCSEEEESSCSSCSSCCGGGGGGGG--------GCCBCHHHHHHHHHHHHHHCC-SSEEEEEECCCHHHHHH--
T ss_pred HhCCcccCceEeecCCCCCCCcChhhHhHHH--------hccccHHHHHHHHHHHHHhcC-CCeEEEEEecCCcHHHH--
Confidence 35678888765322100000013454 589999999999998887433 49999999999999877
Q ss_pred CCCCCChhhHHHHHHHHhcccccccccCChHh---hhcCC-----CCCCCHHH----HHHHHHhcCCCCCccEEEeeccc
Q 036031 310 CTHDLSPVEADELRTIRENTVHWKVKEIDSKE---QRSKG-----YCPLTPKE----VGIFLTALGYPSSTPIYIAAGEI 377 (541)
Q Consensus 310 C~~g~~~~E~~eL~~~R~~~~~wk~k~i~~~~---~R~~G-----~CPLTPeE----vgl~LralGf~~~T~IYlA~Gei 377 (541)
|.+.-..+ . ++.- -+|.- ....| .|==+-++ +..+++.++. ..||||+-.
T Consensus 228 C~hlk~~~-------~----~~lf---aSPQC~Gy~~~~~~lt~emClPSle~I~rqIk~~vk~~~l---ksVFIATDa- 289 (362)
T 3zy2_A 228 CEHIDTTT-------N----RPLF---ASEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIGA---KSVFVASDK- 289 (362)
T ss_dssp HHTCCTTT-------C----CCCT---TTHHHHCGGGTTCCCCHHHHSCCHHHHHHHHHHHHHHHTC---SEEEEEESS-
T ss_pred Hhhhcccc-------C----cccc---cCCcccCCcccCcccchhccCCCHHHHHHHHHHHHHhcCC---cEEEEecCC-
Confidence 87621100 0 0000 01100 01111 23112333 4555666654 489999965
Q ss_pred cCCcccchhHHHhcCCccccccCCCcccccccccchhhhhhhheeeecCCceeeeCCCCchhhhhhHhhhhcC
Q 036031 378 YGGDARMADLQTRYPIMMSKEKLASVEELEPCVNHASQMAALDYIVSVESDVFIPSYSGNMARAVEGHRRFLG 450 (541)
Q Consensus 378 yGG~~~l~pLr~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDYiVcl~SDVFV~t~~GNfa~~V~GhR~y~G 450 (541)
+..++-|+++|+....+ +.+ +.| -.|+||.+||.+||+||+|..++|+..|.-.|-..|
T Consensus 290 ---~~~~~ELk~~L~~~~v~--vv~---~~p------e~a~ID~~I~~~A~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 290 ---DHMIDEINEALKPYEIE--AHR---QEP------DDMYTSLAIMGRADLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp ---CCCHHHHHHHHGGGTCC--EEC---CSS------CCHHHHHHHHHHSSEEEECTTCHHHHHHHHHHHHSS
T ss_pred ---HHHHHHHHHHhhccCce--EEE---eCC------chhHHHHHHHHhCCEeecCccccccHHHHHHHHhcC
Confidence 34688899998752111 111 111 169999999999999999999999999999999988
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=97.86 E-value=0.0013 Score=71.36 Aligned_cols=254 Identities=15% Similarity=0.208 Sum_probs=144.1
Q ss_pred CceEEEEe--cCchhhHHHHHHHHHHHHHHhcCeEEeecccCCcccCC-CCCCCcccchHHHHHhccccceEeccCchhh
Q 036031 131 RGYLLVHT--NGGLNQMRAGICDMVAVARIINATLVVPELDKRSFWQD-SSNFSDVFDEDHFINSLANDVKVIKKVPKEL 207 (541)
Q Consensus 131 nGyL~V~~--nGGLNQqR~~IcdaVavAriLNATLVlP~L~~~s~W~D-~S~F~dIFDvdhFI~sL~~dVrIVk~LP~~~ 207 (541)
..||+... ..|+..+-..++-+..+|-.+|.|||+-.-. |.- ...|+++|.. + ...+.-- |
T Consensus 145 aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~----w~Y~~g~w~~yF~P--~----s~~C~~~---~--- 208 (526)
T 2de0_X 145 AKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN----WRYATGGWETVFRP--V----SETCTDR---S--- 208 (526)
T ss_dssp SCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT----CSSCTTCGGGTBCC--S----CSSCCCC---C---
T ss_pred CCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC----CCcCCCCHHHhhhC--c----CccccCC---C---
Confidence 47888876 4799999999999999999999999995432 432 2478888875 2 2222110 1
Q ss_pred hhhhhhccccccccCccchhhhhhcccccccEEEEeecC--Cc---ccCCCCChh----hhhhh-------hhhcc-ccc
Q 036031 208 STAARAVKHFRSWSGMDYYEGEIASMWEDYQIIRAAKSD--SR---LANNNLPLD----IQKLR-------CRACY-EAL 270 (541)
Q Consensus 208 ~~~~~~~k~~~~ws~~~yy~~~ilP~l~k~~VI~l~~~~--~r---La~~~lP~e----iQrLR-------Crvnf-~AL 270 (541)
.+....|..... -..+.||.+...+ ++ ..+-.+|.+ ++++. |...+ .-+
T Consensus 209 ------~~~~~~w~~~~~--------~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~~q~~~yl~ 274 (526)
T 2de0_X 209 ------GISTGHWSGEVK--------DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKYLI 274 (526)
T ss_dssp ------CSCCCBCCCTTG--------GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred ------ccccCCCCCccc--------CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHHHHHHHHHHc
Confidence 011122321100 0133444332221 11 111134433 23332 00111 138
Q ss_pred cccHHHHHHHHHHHHHHhhcCCeeEeeccchhhhhhhcCCCCCCChhhHHHHHHHHhcccccccccCChHhhhcCCCCCC
Q 036031 271 RFAPQIEAMGKLLVDRMRSYGPYIALHLRYEKDMLAFSGCTHDLSPVEADELRTIRENTVHWKVKEIDSKEQRSKGYCPL 350 (541)
Q Consensus 271 rF~p~I~~lg~~LV~RLr~~G~fiALHLR~E~DMLAfsgC~~g~~~~E~~eL~~~R~~~~~wk~k~i~~~~~R~~G~CPL 350 (541)
|++++|++..+.+.+.+.-.++.|+||.|-= |-++.. ...-+.+ +-++.+. .|
T Consensus 275 rP~~~i~~~I~~~~~~l~~~~piVGVHIRrG-Dk~~~E---~~~~~~~-~Y~~~v~----~~------------------ 327 (526)
T 2de0_X 275 RPQPWLEKEIEEATKKLGFKHPVIGVHVRRT-DKVGTE---AAFHPIE-EYMVHVE----EH------------------ 327 (526)
T ss_dssp CBCHHHHHHHHHHHHHHTCCSSEEEEEECCC------C---CCSCSHH-HHHHHHH----HH------------------
T ss_pred CCCHHHHHHHHHHHHHhCCCCCEEEEEEeCC-CCCccc---cccCCHH-HHHHHHH----HH------------------
Confidence 9999999999999998866789999999964 443221 1111110 0111111 01
Q ss_pred CHHHHHHHHHhcCCCCCccEEEeeccccCCcccchhHHHhcCCc--cccccCCC-cccccccccchhhhhhhheeeecCC
Q 036031 351 TPKEVGIFLTALGYPSSTPIYIAAGEIYGGDARMADLQTRYPIM--MSKEKLAS-VEELEPCVNHASQMAALDYIVSVES 427 (541)
Q Consensus 351 TPeEvgl~LralGf~~~T~IYlA~GeiyGG~~~l~pLr~~FPnl--~tKe~L~s-~eEL~pf~~~ss~~AALDYiVcl~S 427 (541)
-..|+.......+.||||+-+ ...++.+++.||+. ++-..... ...-..+...+...+.+|.++.+++
T Consensus 328 -----~~~l~~~~~~~~~~ifLATDD----p~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs~c 398 (526)
T 2de0_X 328 -----FQLLARRMQVDKKRVYLATDD----PSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQA 398 (526)
T ss_dssp -----HHHHHTTSCCSSCEEEEEESC----HHHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHHHS
T ss_pred -----HHHHHhhcCCCCCeEEEEcCC----HHHHHHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHHHhcC
Confidence 111233346778899999988 45677888899985 32221111 1111112112346788999999999
Q ss_pred ceeeeCCCCchhhhhhHhhhhcC
Q 036031 428 DVFIPSYSGNMARAVEGHRRFLG 450 (541)
Q Consensus 428 DVFV~t~~GNfa~~V~GhR~y~G 450 (541)
|+||.|.++||++++...+.-.+
T Consensus 399 d~~Vgt~sS~~srla~~l~~~~~ 421 (526)
T 2de0_X 399 DFLVCTFSSQVCRVAYEIMQTLH 421 (526)
T ss_dssp SEEEECTTSHHHHHHHHHHTTSS
T ss_pred CeeecCCCCHHHHHHHHHhcCcC
Confidence 99999999999999888765443
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=97.73 E-value=0.00049 Score=68.92 Aligned_cols=265 Identities=13% Similarity=0.169 Sum_probs=128.7
Q ss_pred CCceEEEEecCchhhHHHHHHHHHHHHHHhcCeEEeecccCCcccCCCCCCCcccchHHHHHhccc--cceEecc-Cchh
Q 036031 130 PRGYLLVHTNGGLNQMRAGICDMVAVARIINATLVVPELDKRSFWQDSSNFSDVFDEDHFINSLAN--DVKVIKK-VPKE 206 (541)
Q Consensus 130 snGyL~V~~nGGLNQqR~~IcdaVavAriLNATLVlP~L~~~s~W~D~S~F~dIFDvdhFI~sL~~--dVrIVk~-LP~~ 206 (541)
+..||++...|||.+|--+++.|.++|...|.+|+|--.. ..|-. ..|.+.| ...|. ..+. ...+... .|..
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~-~~y~~--~~~~~~f-p~~F~-~v~~~~~~~~~~~~~~~~ 77 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG-SCYVE--QPFSNAF-PAFFE-PVEDIAGVPVICDDRVNQ 77 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT-CTTCS--STTSBSH-HHHBC-CCSEETTEEEECSGGGGT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC-cccCC--CCccccC-ccccc-chhhhcccceeccccccc
Confidence 5679999999999999999999999999999998886543 22332 3466666 33332 1110 0011110 0000
Q ss_pred hhhhhhhccccccccCcc---ch--hhhhhc-------cc--ccc-cEEEEeecCCcccCCCCChhhhhhhhhhcccccc
Q 036031 207 LSTAARAVKHFRSWSGMD---YY--EGEIAS-------MW--EDY-QIIRAAKSDSRLANNNLPLDIQKLRCRACYEALR 271 (541)
Q Consensus 207 ~~~~~~~~k~~~~ws~~~---yy--~~~ilP-------~l--~k~-~VI~l~~~~~rLa~~~lP~eiQrLRCrvnf~ALr 271 (541)
.. ....+. +..|.... .| .+.+.| ++ ..+ ....+.+. .-+ ...++.-.-..-|.-|+
T Consensus 78 ~~-~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-~~~-----~w~~~~~~~~~i~~yl~ 149 (330)
T 2hhc_A 78 LS-FPGPFF-PRWWNRPSIDCINRPDEQIFRERDELTELFQAREDSEANTIVCD-ACL-----MWRCSEEAERLIFRNIK 149 (330)
T ss_dssp CC-CCSSEE-SGGGGSCGGGGSCCCHHHHHHHHHHHHHHHHSSSCCSCSEEEEC-SCC-----TTSSCHHHHHHHHHHSC
T ss_pred cc-CCCCcC-chhhhccccccccChHHhhhhhhhhhhhhhhhhhccCCCeEEcc-ccc-----ccchhhhhHHHHHhcCC
Confidence 00 000000 00111110 11 111211 11 111 00112221 001 00111111233457789
Q ss_pred ccHHHHHHHHHHHHHHhhcCCeeEeeccchhhhhhhcCCCCCCChhhHHHHHHHHhcccccccccCChHhhhcCCCCCCC
Q 036031 272 FAPQIEAMGKLLVDRMRSYGPYIALHLRYEKDMLAFSGCTHDLSPVEADELRTIRENTVHWKVKEIDSKEQRSKGYCPLT 351 (541)
Q Consensus 272 F~p~I~~lg~~LV~RLr~~G~fiALHLR~E~DMLAfsgC~~g~~~~E~~eL~~~R~~~~~wk~k~i~~~~~R~~G~CPLT 351 (541)
++++|++..+.+.+.+-...++|+||.|.=.+. ..|.++. .|.+. .||
T Consensus 150 p~~~i~~~i~~~~~~~~~~~~~VGVHIRrgD~~---~~~~~~~----------------~~~~~-----------~~~-- 197 (330)
T 2hhc_A 150 LRSEIRARIDALYEEHFSGHSIIGVHVRHGNGE---DIMEHAP----------------YWADS-----------ELA-- 197 (330)
T ss_dssp BCHHHHHHHHHHHHHHTTTSEEEEEEECC-------------------------------CHHH-----------HHH--
T ss_pred ccHHHHHHHHHHHHHhccCCceEEEEEecCCCC---cccccCc----------------chHHH-----------hHH--
Confidence 999999999998876434469999999964321 1232211 01110 011
Q ss_pred HHHHHHHHHhc-C-CC-CCccEEEeeccccCCcccchhHHHhcCCccccc-cCCC-c-cccc-cccc-chhhhhhhheee
Q 036031 352 PKEVGIFLTAL-G-YP-SSTPIYIAAGEIYGGDARMADLQTRYPIMMSKE-KLAS-V-EELE-PCVN-HASQMAALDYIV 423 (541)
Q Consensus 352 PeEvgl~Lral-G-f~-~~T~IYlA~GeiyGG~~~l~pLr~~FPnl~tKe-~L~s-~-eEL~-pf~~-~ss~~AALDYiV 423 (541)
-++.-.-++.+ . .+ .++.||||+-+. ..++-|+++||++.+-. .+.. . ..+- +..+ .....+.+|.+.
T Consensus 198 l~~~~~~i~~~~~~~~~~~~~vfvaSDd~----~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~Dm~L 273 (330)
T 2hhc_A 198 LHQVCMAIRKAKALSYPKPVKVFLCTDSA----QVLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGIEGGASALIDMYL 273 (330)
T ss_dssp HHHHHHHHHHHHTSCCSSCEEEEEEESCH----HHHHHHHHHSTTEECCCC-----------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCceEEEEEeCCH----HHHHHHHHHcCCcccccceeecccccccccCchhhccchHHHHHHHH
Confidence 11111111111 0 12 467899999884 45788999999854321 1110 0 0000 0001 134568899999
Q ss_pred ecCCceee-eCCCCchhhhhh
Q 036031 424 SVESDVFI-PSYSGNMARAVE 443 (541)
Q Consensus 424 cl~SDVFV-~t~~GNfa~~V~ 443 (541)
.+.+|.+| .+..++|+...+
T Consensus 274 LS~cd~~I~~~~~STFs~~aa 294 (330)
T 2hhc_A 274 LARCATVIRFPPTSAFTRYAR 294 (330)
T ss_dssp HTTCSEEEEESTTCGGGHHHH
T ss_pred HHcCCeeEECCCCCCHHHHHH
Confidence 99999999 545777777655
No 5
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=30.78 E-value=25 Score=26.55 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=21.0
Q ss_pred cccccHHHHHHHHHHHHHHhhcCCee
Q 036031 269 ALRFAPQIEAMGKLLVDRMRSYGPYI 294 (541)
Q Consensus 269 ALrF~p~I~~lg~~LV~RLr~~G~fi 294 (541)
++-|+.-+.++|.++|.||+++..|.
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKtGe~Ff 27 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRSGERFL 27 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CccHHHHHHHHHHHHHHHHHccccHH
Confidence 45577889999999999999865554
No 6
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A
Probab=29.61 E-value=55 Score=29.13 Aligned_cols=117 Identities=16% Similarity=0.206 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHhcCCCCCccEEEeeccccCCcccchhHHHhcCCcc-ccccCCCcccccccccchhhhhhhheeeecCCc
Q 036031 350 LTPKEVGIFLTALGYPSSTPIYIAAGEIYGGDARMADLQTRYPIMM-SKEKLASVEELEPCVNHASQMAALDYIVSVESD 428 (541)
Q Consensus 350 LTPeEvgl~LralGf~~~T~IYlA~GeiyGG~~~l~pLr~~FPnl~-tKe~L~s~eEL~pf~~~ss~~AALDYiVcl~SD 428 (541)
|+|+|+..+.+..++. +..+.-|+..|-.+- ++...++.+|+..+....... -.+-++ +
T Consensus 9 l~~~~~~~l~~~~~ls---------------~~~~~~l~~~F~~~D~d~dG~Is~~El~~~~~lg~~~-~~~~l~----~ 68 (208)
T 2ct9_A 9 LRDEELEEIKKETGFS---------------HSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINP-LGDRII----N 68 (208)
T ss_dssp CCHHHHHHHHHHHCCC---------------HHHHHHHHHHHHHHCTTCSSEECTGGGGGCHHHHTST-THHHHH----H
T ss_pred CCHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHcCCCC-cHHHHH----H
Confidence 5677777777777665 233556666666553 455666677776642110000 000000 0
Q ss_pred eeeeCCCC--chhhhhhHhhhhcCCCce-----------eecChHHHH---HHHhhhccCCCCCchhHHHHHHHH
Q 036031 429 VFIPSYSG--NMARAVEGHRRFLGHRKT-----------ISPDRKALV---RLFDKIELGTIREGKSLSNKVIEI 487 (541)
Q Consensus 429 VFV~t~~G--Nfa~~V~GhR~y~G~~kT-----------I~Pdrk~l~---~Lf~~~~~~~~~~w~~f~~~v~~~ 487 (541)
.|-...+| +|.-.+.....+...... .......+. ..||.-.+|.|+ .++|...++.+
T Consensus 69 ~~d~~~~g~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is-~~El~~~l~~~ 142 (208)
T 2ct9_A 69 AFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKIS-RDELLQVLRMM 142 (208)
T ss_dssp TTSCTTCSCEEHHHHHHHHHTTSCCC-----------CCTTSHHHHHHHHHHHHCTTCSSEEC-HHHHHHHHHHH
T ss_pred HHcCCCCCcCcHHHHHHHHHhhccccchhhhcccccccccccHHHHHHHHHHHHCCCCCCEEc-HHHHHHHHHHH
Confidence 11223455 565555544443321110 011233444 455655678888 88898877654
No 7
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=21.88 E-value=9.1 Score=33.16 Aligned_cols=53 Identities=19% Similarity=0.203 Sum_probs=29.9
Q ss_pred CCCC--chhhhhhHhhhhcCCCceeecChHHHHHHHhhhccCCCCCchhHHHHHHHHH
Q 036031 433 SYSG--NMARAVEGHRRFLGHRKTISPDRKALVRLFDKIELGTIREGKSLSNKVIEIH 488 (541)
Q Consensus 433 t~~G--Nfa~~V~GhR~y~G~~kTI~Pdrk~l~~Lf~~~~~~~~~~w~~f~~~v~~~h 488 (541)
..+| ++.-++...+..... .....-+.+...||.-.+|.++ .++|...+..++
T Consensus 68 d~~g~i~~~Ef~~~~~~~~~~--~~~~~~~~~f~~~D~d~~G~i~-~~e~~~~~~~~~ 122 (183)
T 1s6c_A 68 TQTGSVKFEDFVTALSILLRG--TVHEKLRWTFNLYDINKDGYIN-KEEMMDIVKAIY 122 (183)
T ss_dssp TCSSCEEHHHHHHHHHHHHHC--CHHHHHHHHHHHHCTTCSSCEE-HHHHHHHHHHHH
T ss_pred CCCCcEeHHHHHHHHHHHcCC--CHHHHHHHHHHHhCCCCCCeEc-HHHHHHHHHHHH
Confidence 3455 666666555443211 0011123344555666678898 999999887764
No 8
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=20.06 E-value=93 Score=27.61 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHHhcCCCCCccEEEeecc
Q 036031 347 YCPLTPKEVGIFLTALGYPSSTPIYIAAGE 376 (541)
Q Consensus 347 ~CPLTPeEvgl~LralGf~~~T~IYlA~Ge 376 (541)
.||||+||+...|+.|--+.+ ..||...+
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi~i~r 45 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeeeeehh
Confidence 799999999999999885543 56665554
No 9
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=15.94 E-value=2.2e+02 Score=27.96 Aligned_cols=51 Identities=16% Similarity=0.216 Sum_probs=32.8
Q ss_pred CCCCCChhhHHHHHHHHhcccccccccCChHhhhcCCCCCCCHH--------HHHHHHHhcCCCC
Q 036031 310 CTHDLSPVEADELRTIRENTVHWKVKEIDSKEQRSKGYCPLTPK--------EVGIFLTALGYPS 366 (541)
Q Consensus 310 C~~g~~~~E~~eL~~~R~~~~~wk~k~i~~~~~R~~G~CPLTPe--------Evgl~LralGf~~ 366 (541)
|..+.|-.....|.+++........ .-...|.||+-|- |+..+|+.+|++.
T Consensus 210 ~Hn~~Gla~An~laAv~aGa~~vd~------tv~GlG~cp~a~gr~GN~~~E~lv~~l~~~g~~~ 268 (302)
T 2ftp_A 210 FHDTYGQALANIYASLLEGIAVFDS------SVAGLGGCPYAKGATGNVASEDVLYLLNGLEIHT 268 (302)
T ss_dssp EBCTTSCHHHHHHHHHHTTCCEEEE------BGGGCCBCGGGTTCBCBCBHHHHHHHHHHTTCBC
T ss_pred eCCCccHHHHHHHHHHHhCCCEEEe------cccccCCCCCCCCCCCChhHHHHHHHHHhcCCCC
Confidence 4444444556677888765543322 1245688887665 8899999998873
No 10
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=15.51 E-value=72 Score=24.47 Aligned_cols=21 Identities=19% Similarity=0.015 Sum_probs=17.7
Q ss_pred hcCCCCCCCHHHHHHHHHhcC
Q 036031 343 RSKGYCPLTPKEVGIFLTALG 363 (541)
Q Consensus 343 R~~G~CPLTPeEvgl~LralG 363 (541)
.++...|.|++|..+|++++-
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~ 28 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFI 28 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHH
Confidence 335778999999999999983
Done!