Query 036031
Match_columns 541
No_of_seqs 190 out of 387
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 14:41:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036031.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036031hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ihoa2 d.3.1.18 (A:156-293) A 30.5 3 0.00022 35.5 -1.4 36 162-197 31-71 (138)
2 d1l5ia_ d.89.1.4 (A:) DNA-bind 28.9 23 0.0016 29.5 3.9 29 347-376 17-45 (118)
3 d1oqya2 a.5.2.1 (A:317-360) DN 22.3 6.7 0.00049 27.8 -0.6 26 351-376 1-30 (44)
4 d1vjna_ d.157.1.4 (A:) Hypothe 21.4 52 0.0038 28.4 5.2 43 148-195 142-184 (209)
5 d2gh1a1 c.66.1.49 (A:13-293) M 21.0 17 0.0013 32.8 1.8 92 264-366 98-189 (281)
6 d1f54a_ a.39.1.5 (A:) Calmodul 19.2 60 0.0043 23.3 4.3 18 350-367 27-44 (77)
7 d1jjcb2 a.6.1.1 (B:400-474) Do 16.5 40 0.0029 25.2 2.7 23 342-365 13-35 (75)
8 d2g7ja1 d.198.5.1 (A:1-112) Pu 14.3 26 0.0019 28.5 1.2 18 350-367 3-20 (112)
9 d1wgla_ a.5.2.4 (A:) Toll-inte 13.9 22 0.0016 26.3 0.5 49 381-434 10-58 (59)
10 d1wdcc_ a.39.1.5 (C:) Myosin R 13.1 44 0.0032 26.7 2.3 17 350-366 26-42 (152)
No 1
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=30.50 E-value=3 Score=35.49 Aligned_cols=36 Identities=28% Similarity=0.504 Sum_probs=29.5
Q ss_pred eEEeecccCCcccCCCC-----CCCcccchHHHHHhccccc
Q 036031 162 TLVVPELDKRSFWQDSS-----NFSDVFDEDHFINSLANDV 197 (541)
Q Consensus 162 TLVlP~L~~~s~W~D~S-----~F~dIFDvdhFI~sL~~dV 197 (541)
-||||...-++.|+++- .=++|||-|.|--..|..|
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaAv 71 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAAV 71 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHHH
Confidence 39999999999999852 4579999999988776544
No 2
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=28.92 E-value=23 Score=29.51 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHHHhcCCCCCccEEEeecc
Q 036031 347 YCPLTPKEVGIFLTALGYPSSTPIYIAAGE 376 (541)
Q Consensus 347 ~CPLTPeEvgl~LralGf~~~T~IYlA~Ge 376 (541)
+||||+||+...|+.|--+.+. .||..++
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~r 45 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEcc
Confidence 6999999999999999765554 5666544
No 3
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.29 E-value=6.7 Score=27.78 Aligned_cols=26 Identities=42% Similarity=0.606 Sum_probs=17.7
Q ss_pred CHHHHH--HHHHhcCCCCCcc--EEEeecc
Q 036031 351 TPKEVG--IFLTALGYPSSTP--IYIAAGE 376 (541)
Q Consensus 351 TPeEvg--l~LralGf~~~T~--IYlA~Ge 376 (541)
||+|.. .=|.+|||+++.. +|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 455543 3478999999874 6777655
No 4
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=21.41 E-value=52 Score=28.38 Aligned_cols=43 Identities=21% Similarity=0.436 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCeEEeecccCCcccCCCCCCCcccchHHHHHhccc
Q 036031 148 GICDMVAVARIINATLVVPELDKRSFWQDSSNFSDVFDEDHFINSLAN 195 (541)
Q Consensus 148 ~IcdaVavAriLNATLVlP~L~~~s~W~D~S~F~dIFDvdhFI~sL~~ 195 (541)
.--+|+.+|+.|++-.|||-= |+.....| ++=.+|.|++.++.
T Consensus 142 ~~~ea~~~~~~l~pk~viP~H----~~t~~~~~-~~~~~~~f~~~~~~ 184 (209)
T d1vjna_ 142 GPKEAKEVADLLNAKVIIPMH----YKTKYLKF-NLLPVDDFLKLFDS 184 (209)
T ss_dssp CHHHHHHHHHHTTCSEEEEES----CCCSSCCT-TCCCTHHHHTTSSC
T ss_pred CHHHHHHHHHHhCCCEEEEec----cCCccccc-CcCCHHHHHHHhhh
Confidence 456899999999999999961 33333333 45567888887663
No 5
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}
Probab=21.03 E-value=17 Score=32.77 Aligned_cols=92 Identities=15% Similarity=0.188 Sum_probs=57.3
Q ss_pred hhccccccccHHHHHHHHHHHHHHhhcCCeeEeeccchhhhhhhcCCCCCCChhhHHHHHHHHhcccccccccCChHhhh
Q 036031 264 RACYEALRFAPQIEAMGKLLVDRMRSYGPYIALHLRYEKDMLAFSGCTHDLSPVEADELRTIRENTVHWKVKEIDSKEQR 343 (541)
Q Consensus 264 rvnf~ALrF~p~I~~lg~~LV~RLr~~G~fiALHLR~E~DMLAfsgC~~g~~~~E~~eL~~~R~~~~~wk~k~i~~~~~R 343 (541)
-++.++|...++.+.+-+.+.+.|+.+|.++....-...++..+ ...+....+...+.. |+.. -....+
T Consensus 98 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~--~~~~~~ 166 (281)
T d2gh1a1 98 AICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASY--LLDGEKQSEFIQLGV-------LQKL--FESDTQ 166 (281)
T ss_dssp EEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHTSE--EETTSCHHHHCCHHH-------HHHH--HHHHHH
T ss_pred EEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCccccchhh--ccCchhhhhhhhHHH-------HHHH--HHHHHH
Confidence 34456677777778888889999998998888776655555555 223322222211211 1110 012335
Q ss_pred cCCCCCCCHHHHHHHHHhcCCCC
Q 036031 344 SKGYCPLTPKEVGIFLTALGYPS 366 (541)
Q Consensus 344 ~~G~CPLTPeEvgl~LralGf~~ 366 (541)
..|..|....++..+|+..||.+
T Consensus 167 ~~~~~~~i~~~l~~~l~eaGf~~ 189 (281)
T d2gh1a1 167 RNGKDGNIGMKIPIYLSELGVKN 189 (281)
T ss_dssp TTCCCTTGGGTHHHHHHHTTCEE
T ss_pred HcCCCCCHHHHHHHHHHHcCCeE
Confidence 56777777788899999999984
No 6
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.17 E-value=60 Score=23.28 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHhcCCCCC
Q 036031 350 LTPKEVGIFLTALGYPSS 367 (541)
Q Consensus 350 LTPeEvgl~LralGf~~~ 367 (541)
++++|...+|+.+|+.-+
T Consensus 27 I~~~el~~~l~~~g~~~t 44 (77)
T d1f54a_ 27 ISSSELATVMRSLGLSPS 44 (77)
T ss_dssp EEHHHHHHHHHHHTCCCC
T ss_pred EChHHHHHHHHHhCCCCC
Confidence 788888888888887643
No 7
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=16.46 E-value=40 Score=25.18 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=19.9
Q ss_pred hhcCCCCCCCHHHHHHHHHhcCCC
Q 036031 342 QRSKGYCPLTPKEVGIFLTALGYP 365 (541)
Q Consensus 342 ~R~~G~CPLTPeEvgl~LralGf~ 365 (541)
.+..|.. ++++|+..+|+.|||.
T Consensus 13 ~~~lG~~-i~~~~i~~~L~~Lg~~ 35 (75)
T d1jjcb2 13 NRLLGTS-YPEAEQIAILKRLGCR 35 (75)
T ss_dssp HHHHTCC-CCHHHHHHHHHHTTCE
T ss_pred HHHhCCC-CCHHHHHHHHHHcCCc
Confidence 4566776 9999999999999996
No 8
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=14.34 E-value=26 Score=28.53 Aligned_cols=18 Identities=33% Similarity=0.569 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHhcCCCCC
Q 036031 350 LTPKEVGIFLTALGYPSS 367 (541)
Q Consensus 350 LTPeEvgl~LralGf~~~ 367 (541)
|-|.||+.+|+..||..+
T Consensus 3 LRPDEVArVLe~aGF~~d 20 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVD 20 (112)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred cChHHHHHHHHHcCceEE
Confidence 679999999999999754
No 9
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.89 E-value=22 Score=26.28 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=32.3
Q ss_pred cccchhHHHhcCCccccccCCCcccccccccchhhhhhhheeeecCCceeeeCC
Q 036031 381 DARMADLQTRYPIMMSKEKLASVEELEPCVNHASQMAALDYIVSVESDVFIPSY 434 (541)
Q Consensus 381 ~~~l~pLr~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDYiVcl~SDVFV~t~ 434 (541)
+..+.-|++|||++. ++.+-+ -|.. +..+..+|+|=..-+.-+.|-|+.
T Consensus 10 Ee~i~~LkeMFP~~D-~~vI~~--VL~a--~~G~vd~aid~LL~Msd~~~gp~s 58 (59)
T d1wgla_ 10 EEDLKAIQDMFPNMD-QEVIRS--VLEA--QRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSSC-HHHHHH--HHTT--TTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCCC-HHHHHH--HHHH--cCCCHHHHHHHHHhcCCCCcCCCC
Confidence 556899999999986 222211 2222 456788888877777777666654
No 10
>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=13.11 E-value=44 Score=26.66 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHhcCCCC
Q 036031 350 LTPKEVGIFLTALGYPS 366 (541)
Q Consensus 350 LTPeEvgl~LralGf~~ 366 (541)
++++|...+|++||+..
T Consensus 26 I~~~el~~~l~~lG~~~ 42 (152)
T d1wdcc_ 26 VDAFKLGDVCRCLGINP 42 (152)
T ss_dssp EEGGGHHHHHHHTTCCC
T ss_pred ECHHHHHHHHHHhccCc
Confidence 88999999999999874
Done!