BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036034
         (482 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
           Ectodomain
 pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
           Brassinolide
          Length = 772

 Score =  158 bits (399), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 174/344 (50%), Gaps = 38/344 (11%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAI 60
           +G    L HLD+S N L G     +   ++L+ L++SSN  VG IP     L  L  L++
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSL 273

Query: 61  ASNHINVSIP-LEIGNLNFLQVLDLSGNEIRGSIPSTFG--------------------- 98
           A N     IP    G  + L  LDLSGN   G++P  FG                     
Sbjct: 274 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 333

Query: 99  ----HLKRLKSLDLSQNKLVGPIPSSLGHLT-QLTTLNMRSNLINASLV---------NL 144
                ++ LK LDLS N+  G +P SL +L+  L TL++ SN  +  ++          L
Sbjct: 334 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 393

Query: 145 TSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQING 204
             L L  N  TG IP TL + + +  L LS N L G IPSS+G L++L  L ++ N + G
Sbjct: 394 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 453

Query: 205 SIPLEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIGKLQEL 264
            IP E+  +K +E + L  N L G IP  L NC+ L  + L NN L G IP  IG+L+ L
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 513

Query: 265 YYLDLSHNFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSVRK 308
             L LS+N  +G I +ELG   S+  +DL+ N  +G+IP ++ K
Sbjct: 514 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 557



 Score =  145 bits (366), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 175/369 (47%), Gaps = 68/369 (18%)

Query: 7   LVHLDLSDNYLWGYIPPTLGRLSK--LENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNH 64
           L+ LDLS N   G I P L +  K  L+ L+L +N   G IP TL + ++L +L ++ N+
Sbjct: 367 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426

Query: 65  INVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHL 124
           ++ +IP  +G+L+ L+ L L  N + G IP    ++K L++L L  N L G IPS L + 
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486

Query: 125 TQLTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPS 184
           T                 NL  +SL  N LTG IP  +G L  + IL LS N   G IP+
Sbjct: 487 T-----------------NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529

Query: 185 SVGHLTQLNTLNMYSNQINGSIPLEI--------------------------------GN 212
            +G    L  L++ +N  NG+IP  +                                GN
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589

Query: 213 LKRVEAVKLYD-NKLD-------------GPIPPELMNCSKLMELELGNNLLRGSIPSEI 258
           L   + ++    N+L              G   P   N   +M L++  N+L G IP EI
Sbjct: 590 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 649

Query: 259 GKLQELYYLDLSHNFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSVRKVPHL---DVL 315
           G +  L+ L+L HN I+G I  E+G +  ++ +DLS N L G IP+++  +  L   D+ 
Sbjct: 650 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 709

Query: 316 GNNLEGEIP 324
            NNL G IP
Sbjct: 710 NNNLSGPIP 718



 Score =  130 bits (328), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 157/344 (45%), Gaps = 63/344 (18%)

Query: 7   LVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHIN 66
           L  L L +N   G IPPTL   S+L +LHLS N L G IPS+LG L++L  L +  N + 
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452

Query: 67  VSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQ 126
             IP E+  +  L+ L L  N++ G IPS   +   L  + LS N+L G IP  +G L  
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE- 511

Query: 127 LTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSV 186
                           NL  L L  N+ +G IP+ LG    +  LDL+ N   G IP+++
Sbjct: 512 ----------------NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555

Query: 187 --------------------------------GHL--------TQLNTL------NMYSN 200
                                           G+L         QLN L      N+ S 
Sbjct: 556 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 615

Query: 201 QINGSIPLEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIGK 260
              G       N   +  + +  N L G IP E+ +   L  L LG+N + GSIP E+G 
Sbjct: 616 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 675

Query: 261 LQELYYLDLSHNFINGKILSELGAIPSIDTVDLSMNNLSGSIPK 304
           L+ L  LDLS N ++G+I   + A+  +  +DLS NNLSG IP+
Sbjct: 676 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719



 Score =  118 bits (295), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 104/316 (32%), Positives = 143/316 (45%), Gaps = 64/316 (20%)

Query: 7   LVHLDLSDNYLWGYIPPTLGRLSKL------------------------ENLHLSSNSLV 42
           LV L LS NYL G IP +LG LSKL                        E L L  N L 
Sbjct: 417 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 476

Query: 43  GNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKR 102
           G IPS L + T L  +++++N +   IP  IG L  L +L LS N   G+IP+  G  + 
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 536

Query: 103 LKSLDLSQNKLVGPIPSSL------------------------------GHLTQLTTLNM 132
           L  LDL+ N   G IP+++                              G    L    +
Sbjct: 537 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 596

Query: 133 RSNLINA----SLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGH 188
           RS  +N     +  N+TS    Y   T P   T  +   +  LD+S N L G IP  +G 
Sbjct: 597 RSEQLNRLSTRNPCNITSRV--YGGHTSP---TFDNNGSMMFLDMSYNMLSGYIPKEIGS 651

Query: 189 LTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNN 248
           +  L  LN+  N I+GSIP E+G+L+ +  + L  NKLDG IP  +   + L E++L NN
Sbjct: 652 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 711

Query: 249 LLRGSIPSEIGKLQEL 264
            L G IP E+G+ +  
Sbjct: 712 NLSGPIP-EMGQFETF 726



 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 109/250 (43%), Gaps = 48/250 (19%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAI 60
           +GRL NL  L LS+N   G IP  LG    L  L L++N   G IP+ +   +      I
Sbjct: 507 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG----KI 562

Query: 61  ASNHI---------NVSIPLEI-GNLNFLQVLDLSGNEIR----------------GSIP 94
           A+N I         N  +  E  G  N L+   +   ++                 G   
Sbjct: 563 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 622

Query: 95  STFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHYNNL 154
            TF +   +  LD+S N L G IP  +G +  L  LN                 L +N++
Sbjct: 623 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN-----------------LGHNDI 665

Query: 155 TGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGNLK 214
           +G IP  +G L  + ILDLS NKL G IP ++  LT L  +++ +N ++G IP E+G  +
Sbjct: 666 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFE 724

Query: 215 RVEAVKLYDN 224
                K  +N
Sbjct: 725 TFPPAKFLNN 734



 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 127/260 (48%), Gaps = 27/260 (10%)

Query: 84  LSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIP--SSLGHLTQLTTLNMRSNLINA-- 139
           LS + I GS+ S F     L SLDLS+N L GP+   +SLG  + L  LN+ SN ++   
Sbjct: 81  LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139

Query: 140 ------SLVNLTSLSLHYNNLTGPIPSTLGHL-----NRIRILDLSENKLVGPIPSSVGH 188
                  L +L  L L  N+++G   + +G +       ++ L +S NK+ G +   V  
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISG--ANVVGWVLSDGCGELKHLAISGNKISGDV--DVSR 195

Query: 189 LTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNN 248
              L  L++ SN  +  IP  +G+   ++ + +  NKL G     +  C++L  L + +N
Sbjct: 196 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 254

Query: 249 LLRGSIPSEIGKLQELYYLDLSHNFINGKILSEL-GAIPSIDTVDLSMNNLSGSIPK--- 304
              G IP     L+ L YL L+ N   G+I   L GA  ++  +DLS N+  G++P    
Sbjct: 255 QFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 312

Query: 305 SVRKVPHLDVLGNNLEGEIP 324
           S   +  L +  NN  GE+P
Sbjct: 313 SCSLLESLALSSNNFSGELP 332


>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
 pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
          Length = 768

 Score =  158 bits (399), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 174/344 (50%), Gaps = 38/344 (11%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAI 60
           +G    L HLD+S N L G     +   ++L+ L++SSN  VG IP     L  L  L++
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSL 276

Query: 61  ASNHINVSIP-LEIGNLNFLQVLDLSGNEIRGSIPSTFG--------------------- 98
           A N     IP    G  + L  LDLSGN   G++P  FG                     
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336

Query: 99  ----HLKRLKSLDLSQNKLVGPIPSSLGHLT-QLTTLNMRSNLINASLV---------NL 144
                ++ LK LDLS N+  G +P SL +L+  L TL++ SN  +  ++          L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396

Query: 145 TSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQING 204
             L L  N  TG IP TL + + +  L LS N L G IPSS+G L++L  L ++ N + G
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456

Query: 205 SIPLEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIGKLQEL 264
            IP E+  +K +E + L  N L G IP  L NC+ L  + L NN L G IP  IG+L+ L
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516

Query: 265 YYLDLSHNFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSVRK 308
             L LS+N  +G I +ELG   S+  +DL+ N  +G+IP ++ K
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560



 Score =  145 bits (366), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 175/369 (47%), Gaps = 68/369 (18%)

Query: 7   LVHLDLSDNYLWGYIPPTLGRLSK--LENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNH 64
           L+ LDLS N   G I P L +  K  L+ L+L +N   G IP TL + ++L +L ++ N+
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429

Query: 65  INVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHL 124
           ++ +IP  +G+L+ L+ L L  N + G IP    ++K L++L L  N L G IPS L + 
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489

Query: 125 TQLTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPS 184
           T                 NL  +SL  N LTG IP  +G L  + IL LS N   G IP+
Sbjct: 490 T-----------------NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532

Query: 185 SVGHLTQLNTLNMYSNQINGSIPLEI--------------------------------GN 212
            +G    L  L++ +N  NG+IP  +                                GN
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592

Query: 213 LKRVEAVKLYD-NKLD-------------GPIPPELMNCSKLMELELGNNLLRGSIPSEI 258
           L   + ++    N+L              G   P   N   +M L++  N+L G IP EI
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652

Query: 259 GKLQELYYLDLSHNFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSVRKVPHL---DVL 315
           G +  L+ L+L HN I+G I  E+G +  ++ +DLS N L G IP+++  +  L   D+ 
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712

Query: 316 GNNLEGEIP 324
            NNL G IP
Sbjct: 713 NNNLSGPIP 721



 Score =  130 bits (328), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 157/344 (45%), Gaps = 63/344 (18%)

Query: 7   LVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHIN 66
           L  L L +N   G IPPTL   S+L +LHLS N L G IPS+LG L++L  L +  N + 
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455

Query: 67  VSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQ 126
             IP E+  +  L+ L L  N++ G IPS   +   L  + LS N+L G IP  +G L  
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE- 514

Query: 127 LTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSV 186
                           NL  L L  N+ +G IP+ LG    +  LDL+ N   G IP+++
Sbjct: 515 ----------------NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558

Query: 187 --------------------------------GHL--------TQLNTL------NMYSN 200
                                           G+L         QLN L      N+ S 
Sbjct: 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618

Query: 201 QINGSIPLEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIGK 260
              G       N   +  + +  N L G IP E+ +   L  L LG+N + GSIP E+G 
Sbjct: 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 678

Query: 261 LQELYYLDLSHNFINGKILSELGAIPSIDTVDLSMNNLSGSIPK 304
           L+ L  LDLS N ++G+I   + A+  +  +DLS NNLSG IP+
Sbjct: 679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722



 Score =  118 bits (295), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 104/316 (32%), Positives = 143/316 (45%), Gaps = 64/316 (20%)

Query: 7   LVHLDLSDNYLWGYIPPTLGRLSKL------------------------ENLHLSSNSLV 42
           LV L LS NYL G IP +LG LSKL                        E L L  N L 
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479

Query: 43  GNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKR 102
           G IPS L + T L  +++++N +   IP  IG L  L +L LS N   G+IP+  G  + 
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539

Query: 103 LKSLDLSQNKLVGPIPSSL------------------------------GHLTQLTTLNM 132
           L  LDL+ N   G IP+++                              G    L    +
Sbjct: 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599

Query: 133 RSNLINA----SLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGH 188
           RS  +N     +  N+TS    Y   T P   T  +   +  LD+S N L G IP  +G 
Sbjct: 600 RSEQLNRLSTRNPCNITSRV--YGGHTSP---TFDNNGSMMFLDMSYNMLSGYIPKEIGS 654

Query: 189 LTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNN 248
           +  L  LN+  N I+GSIP E+G+L+ +  + L  NKLDG IP  +   + L E++L NN
Sbjct: 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714

Query: 249 LLRGSIPSEIGKLQEL 264
            L G IP E+G+ +  
Sbjct: 715 NLSGPIP-EMGQFETF 729



 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 109/250 (43%), Gaps = 48/250 (19%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAI 60
           +GRL NL  L LS+N   G IP  LG    L  L L++N   G IP+ +   +      I
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG----KI 565

Query: 61  ASNHI---------NVSIPLEI-GNLNFLQVLDLSGNEIR----------------GSIP 94
           A+N I         N  +  E  G  N L+   +   ++                 G   
Sbjct: 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625

Query: 95  STFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHYNNL 154
            TF +   +  LD+S N L G IP  +G +  L  LN                 L +N++
Sbjct: 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN-----------------LGHNDI 668

Query: 155 TGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGNLK 214
           +G IP  +G L  + ILDLS NKL G IP ++  LT L  +++ +N ++G IP E+G  +
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFE 727

Query: 215 RVEAVKLYDN 224
                K  +N
Sbjct: 728 TFPPAKFLNN 737



 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 127/260 (48%), Gaps = 27/260 (10%)

Query: 84  LSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIP--SSLGHLTQLTTLNMRSNLINA-- 139
           LS + I GS+ S F     L SLDLS+N L GP+   +SLG  + L  LN+ SN ++   
Sbjct: 84  LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142

Query: 140 ------SLVNLTSLSLHYNNLTGPIPSTLGHL-----NRIRILDLSENKLVGPIPSSVGH 188
                  L +L  L L  N+++G   + +G +       ++ L +S NK+ G +   V  
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISG--ANVVGWVLSDGCGELKHLAISGNKISGDV--DVSR 198

Query: 189 LTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNN 248
              L  L++ SN  +  IP  +G+   ++ + +  NKL G     +  C++L  L + +N
Sbjct: 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257

Query: 249 LLRGSIPSEIGKLQELYYLDLSHNFINGKILSEL-GAIPSIDTVDLSMNNLSGSIPK--- 304
              G IP     L+ L YL L+ N   G+I   L GA  ++  +DLS N+  G++P    
Sbjct: 258 QFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315

Query: 305 SVRKVPHLDVLGNNLEGEIP 324
           S   +  L +  NN  GE+P
Sbjct: 316 SCSLLESLALSSNNFSGELP 335


>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
           Inhibiting Protein), A Leucine Rich Repeat Protein
           Involved In Plant Defense
          Length = 313

 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 118/219 (53%), Gaps = 11/219 (5%)

Query: 15  NYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIG 74
           N L G IPP + +L++L  L+++  ++ G IP  L  +  L TL  + N ++ ++P  I 
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146

Query: 75  NLNFLQVLDLSGNEIRGSIPSTFGHLKRL-KSLDLSQNKLVGPIPSSLGHLTQLTTLNMR 133
           +L  L  +   GN I G+IP ++G   +L  S+ +S+N+L G IP +  +L  L  +++ 
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLS 205

Query: 134 SNLI--NASLV-----NLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSV 186
            N++  +AS++     N   + L  N+L   +   +G    +  LDL  N++ G +P  +
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGL 264

Query: 187 GHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDNK 225
             L  L++LN+  N + G IP + GNL+R +     +NK
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302



 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 113/245 (46%), Gaps = 20/245 (8%)

Query: 21  IPPTLGRLSKLENLHLSS-NSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFL 79
           IP +L  L  L  L++   N+LVG IP  +  LTQL  L I   +++ +IP  +  +  L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127

Query: 80  QVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINA 139
             LD S N + G++P +   L  L  +    N++ G IP S G  ++L            
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL------------ 175

Query: 140 SLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYS 199
                TS+++  N LTG IP T  +LN +  +DLS N L G      G       +++  
Sbjct: 176 ----FTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 200 NQINGSIPLEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIG 259
           N +   +  ++G  K +  + L +N++ G +P  L     L  L +  N L G IP + G
Sbjct: 231 NSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGG 288

Query: 260 KLQEL 264
            LQ  
Sbjct: 289 NLQRF 293



 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 117/250 (46%), Gaps = 45/250 (18%)

Query: 82  LDLSGNEIRGS--IPSTFGHLKRLKSLDLSQ-NKLVGPIPSSLGHLTQLTTLNMRSNLIN 138
           LDLSG  +     IPS+  +L  L  L +   N LVGPIP ++  LTQL  L        
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL-------- 106

Query: 139 ASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMY 198
                     + + N++G IP  L  +  +  LD S N L G +P S+  L  L  +   
Sbjct: 107 ---------YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157

Query: 199 SNQINGSIPLEIGNLKRV-EAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRG----- 252
            N+I+G+IP   G+  ++  ++ +  N+L G IPP   N + L  ++L  N+L G     
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL 216

Query: 253 ---------------SIPSEIGKL---QELYYLDLSHNFINGKILSELGAIPSIDTVDLS 294
                          S+  ++GK+   + L  LDL +N I G +   L  +  + ++++S
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 295 MNNLSGSIPK 304
            NNL G IP+
Sbjct: 277 FNNLCGEIPQ 286



 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 98/196 (50%), Gaps = 13/196 (6%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQL-TTLA 59
           + +++ LV LD S N L G +PP++  L  L  +    N + G IP + G  ++L T++ 
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180

Query: 60  IASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPS 119
           I+ N +   IP    NLN L  +DLS N + G     FG  K  + + L++N L   +  
Sbjct: 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-G 238

Query: 120 SLGHLTQLTTLNMRSNLINASLVN-------LTSLSLHYNNLTGPIPSTLGHLNRIRILD 172
            +G    L  L++R+N I  +L         L SL++ +NNL G IP   G+L R  +  
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSA 297

Query: 173 LSENKLV--GPIPSSV 186
            + NK +   P+P+  
Sbjct: 298 YANNKCLCGSPLPACT 313



 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 4/102 (3%)

Query: 229 PIPPELMNCSKLMELELGN-NLLRGSIPSEIGKLQELYYLDLSHNFINGKILSELGAIPS 287
           PIP  L N   L  L +G  N L G IP  I KL +L+YL ++H  ++G I   L  I +
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126

Query: 288 IDTVDLSMNNLSGSIPKSVRKVPHL---DVLGNNLEGEIPST 326
           + T+D S N LSG++P S+  +P+L      GN + G IP +
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168



 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 29/169 (17%)

Query: 167 RIRILDLSENKLVGP--IPSSVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDN 224
           R+  LDLS   L  P  IPSS+ +L  LN L              IG +          N
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFL-------------YIGGI----------N 87

Query: 225 KLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIGKLQELYYLDLSHNFINGKILSELGA 284
            L GPIPP +   ++L  L + +  + G+IP  + +++ L  LD S+N ++G +   + +
Sbjct: 88  NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147

Query: 285 IPSIDTVDLSMNNLSGSIPKSVRKVPHL----DVLGNNLEGEIPSTSAN 329
           +P++  +    N +SG+IP S      L     +  N L G+IP T AN
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196


>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
 pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
          Length = 461

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 110/227 (48%), Gaps = 41/227 (18%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSL--VGNIPSTLGHLTQLTTL 58
           + +L NL  L  ++N +    P  LG L+ L+ L L+ N L  +G    TL  LT LT L
Sbjct: 190 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG----TLASLTNLTDL 243

Query: 59  AIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKL--VGP 116
            +A+N I+   PL    L  L  L L  N+I    P     L  L +L+L++N+L  + P
Sbjct: 244 DLANNQISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 299

Query: 117 IPSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSEN 176
           I                     ++L NLT L+L++NN++   P  +  L +++ L  S N
Sbjct: 300 I---------------------SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNN 336

Query: 177 KLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYD 223
           K+     SS+ +LT +N L+   NQI+   PL   NL R+  + L D
Sbjct: 337 KVSD--VSSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLND 379



 Score = 31.2 bits (69), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 16/182 (8%)

Query: 141 LVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSN 200
           L NLT ++   N LT   P  L +L ++  + ++ N++    P  + +LT L  L +++N
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117

Query: 201 QINGSIPLE-IGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIG 259
           QI    PL+ + NL R+E   L  N +       L   + L +L  GN +   +    + 
Sbjct: 118 QITDIDPLKNLTNLNRLE---LSSNTISD--ISALSGLTSLQQLNFGNQV---TDLKPLA 169

Query: 260 KLQELYYLDLSHNFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSV-RKVPHLDVLGNN 318
            L  L  LD+S N ++   +S L  + +++++  + N +S   P  +   +  L + GN 
Sbjct: 170 NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 227

Query: 319 LE 320
           L+
Sbjct: 228 LK 229


>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
          Length = 462

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 110/227 (48%), Gaps = 41/227 (18%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSL--VGNIPSTLGHLTQLTTL 58
           + +L NL  L  ++N +    P  LG L+ L+ L L+ N L  +G    TL  LT LT L
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG----TLASLTNLTDL 244

Query: 59  AIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKL--VGP 116
            +A+N I+   PL    L  L  L L  N+I    P     L  L +L+L++N+L  + P
Sbjct: 245 DLANNQISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300

Query: 117 IPSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSEN 176
           I                     ++L NLT L+L++NN++   P  +  L +++ L  S N
Sbjct: 301 I---------------------SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNN 337

Query: 177 KLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYD 223
           K+     SS+ +LT +N L+   NQI+   PL   NL R+  + L D
Sbjct: 338 KVSD--VSSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLND 380



 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 15/182 (8%)

Query: 141 LVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSN 200
           L NLT ++   N LT   P  L +L ++  + ++ N++    P  + +LT L  L +++N
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117

Query: 201 QINGSIPLE-IGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIG 259
           QI    PL+ + NL R+E   L  N +       L   + L +L   +N +    P  + 
Sbjct: 118 QITDIDPLKNLTNLNRLE---LSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LA 170

Query: 260 KLQELYYLDLSHNFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSV-RKVPHLDVLGNN 318
            L  L  LD+S N ++   +S L  + +++++  + N +S   P  +   +  L + GN 
Sbjct: 171 NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228

Query: 319 LE 320
           L+
Sbjct: 229 LK 230



 Score = 30.4 bits (67), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 9/133 (6%)

Query: 186 VGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELEL 245
           V +L  L  +N  +NQ+    PL+  NL ++  + + +N++    P  L N + L  L L
Sbjct: 59  VEYLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114

Query: 246 GNNLLRGSIPSEIGKLQELYYLDLSHNFINGKILSELGAIPSIDTVDLSMNNLSGSIP-K 304
            NN +    P  +  L  L  L+LS N I+   +S L  + S+  +  S N ++   P  
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKPLA 170

Query: 305 SVRKVPHLDVLGN 317
           ++  +  LD+  N
Sbjct: 171 NLTTLERLDISSN 183


>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
           Plant Receptor- Like Kinase Bak1 Activation
 pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
          Length = 326

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 2/90 (2%)

Query: 393 RITFQDIIEATEDFHIKYCIGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRN 452
           R + +++  A+++F  K  +G GG+G VY+ RL  G +VA+K+L             F+ 
Sbjct: 19  RFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLK--EERTQGGELQFQT 76

Query: 453 KARLLSQIRHRNIVKLYGFCLHRKCMFLIY 482
           +  ++S   HRN+++L GFC+      L+Y
Sbjct: 77  EVEMISMAVHRNLLRLRGFCMTPTERLLVY 106


>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
           Kinaseinteracting Domains In A Single Type Iii Effector
 pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
           Kinaseinteracting Domains In A Single Type Iii Effector
 pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
           Kinaseinteracting Domains In A Single Type Iii Effector
 pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
           Kinaseinteracting Domains In A Single Type Iii Effector
          Length = 349

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 393 RITFQDIIEATEDFHIKYCIGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRN 452
           R + +++  A+++F  K  +G GG+G VY+ RL  G +VA+K+L             F+ 
Sbjct: 27  RFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLK--EERXQGGELQFQT 84

Query: 453 KARLLSQIRHRNIVKLYGFCLHRKCMFLIY 482
           +  ++S   HRN+++L GFC+      L+Y
Sbjct: 85  EVEMISMAVHRNLLRLRGFCMTPTERLLVY 114


>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
          Length = 466

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 41/227 (18%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSL--VGNIPSTLGHLTQLTTL 58
           + +L NL  L  ++N +    P  LG L+ L+ L L+ N L  +G    TL  LT LT L
Sbjct: 194 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG----TLASLTNLTDL 247

Query: 59  AIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKL--VGP 116
            +A+N I+   PL    L  L  L L  N+I    P     L  L +L+L++N+L  + P
Sbjct: 248 DLANNQISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 303

Query: 117 IPSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSEN 176
           I                     ++L NLT L+L++NN++   P  +  L +++ L  + N
Sbjct: 304 I---------------------SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANN 340

Query: 177 KLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYD 223
           K+     SS+ +LT +N L+   NQI+   PL   NL R+  + L D
Sbjct: 341 KVSD--VSSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLND 383



 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 16/182 (8%)

Query: 141 LVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSN 200
           L NLT ++   N LT   P  L +L ++  + ++ N++    P  + +LT L  L +++N
Sbjct: 66  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 121

Query: 201 QINGSIPLE-IGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIG 259
           QI    PL+ + NL R+E   L  N +       L   + L +L  GN +   +    + 
Sbjct: 122 QITDIDPLKNLTNLNRLE---LSSNTISD--ISALSGLTSLQQLSFGNQV---TDLKPLA 173

Query: 260 KLQELYYLDLSHNFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSV-RKVPHLDVLGNN 318
            L  L  LD+S N ++   +S L  + +++++  + N +S   P  +   +  L + GN 
Sbjct: 174 NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 231

Query: 319 LE 320
           L+
Sbjct: 232 LK 233


>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
          Length = 462

 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 109/227 (48%), Gaps = 41/227 (18%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSL--VGNIPSTLGHLTQLTTL 58
           + +L NL  L  ++N +    P  LG L+ L+ L L+ N L  +G    TL  LT LT L
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG----TLASLTNLTDL 244

Query: 59  AIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKL--VGP 116
            +A+N I+   PL    L  L  L L  N+I    P     L  L +L+L++N+L  + P
Sbjct: 245 DLANNQISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300

Query: 117 IPSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSEN 176
           I                     ++L NLT L+L++NN++   P  +  L +++ L    N
Sbjct: 301 I---------------------SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN 337

Query: 177 KLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYD 223
           K+     SS+ +LT +N L+   NQI+   PL   NL R+  + L D
Sbjct: 338 KVSD--VSSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLND 380



 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 15/182 (8%)

Query: 141 LVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSN 200
           L NLT ++   N LT   P  L +L ++  + ++ N++    P  + +LT L  L +++N
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117

Query: 201 QINGSIPLE-IGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIG 259
           QI    PL+ + NL R+E   L  N +       L   + L +L   +N +    P  + 
Sbjct: 118 QITDIDPLKNLTNLNRLE---LSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKP--LA 170

Query: 260 KLQELYYLDLSHNFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSV-RKVPHLDVLGNN 318
            L  L  LD+S N ++   +S L  + +++++  + N +S   P  +   +  L + GN 
Sbjct: 171 NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228

Query: 319 LE 320
           L+
Sbjct: 229 LK 230



 Score = 30.8 bits (68), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 9/133 (6%)

Query: 186 VGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELEL 245
           V +L  L  +N  +NQ+    PL+  NL ++  + + +N++    P  L N + L  L L
Sbjct: 59  VEYLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114

Query: 246 GNNLLRGSIPSEIGKLQELYYLDLSHNFINGKILSELGAIPSIDTVDLSMNNLSGSIP-K 304
            NN +    P  +  L  L  L+LS N I+   +S L  + S+  ++ S N ++   P  
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKPLA 170

Query: 305 SVRKVPHLDVLGN 317
           ++  +  LD+  N
Sbjct: 171 NLTTLERLDISSN 183


>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
          Length = 462

 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 109/227 (48%), Gaps = 41/227 (18%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSL--VGNIPSTLGHLTQLTTL 58
           + +L NL  L  ++N +    P  LG L+ L+ L L+ N L  +G    TL  LT LT L
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG----TLASLTNLTDL 244

Query: 59  AIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKL--VGP 116
            +A+N I+   PL    L  L  L L  N+I    P     L  L +L+L++N+L  + P
Sbjct: 245 DLANNQISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300

Query: 117 IPSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSEN 176
           I                     ++L NLT L+L++NN++   P  +  L +++ L    N
Sbjct: 301 I---------------------SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN 337

Query: 177 KLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYD 223
           K+     SS+ +LT +N L+   NQI+   PL   NL R+  + L D
Sbjct: 338 KVSD--VSSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLND 380



 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 15/182 (8%)

Query: 141 LVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSN 200
           L NLT ++   N LT   P  L +L ++  + ++ N++    P  + +LT L  L +++N
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117

Query: 201 QINGSIPLE-IGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIG 259
           QI    PL+ + NL R+E   L  N +       L   + L +L   +N +    P  + 
Sbjct: 118 QITDIDPLKNLTNLNRLE---LSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LA 170

Query: 260 KLQELYYLDLSHNFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSV-RKVPHLDVLGNN 318
            L  L  LD+S N ++   +S L  + +++++  + N +S   P  +   +  L + GN 
Sbjct: 171 NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228

Query: 319 LE 320
           L+
Sbjct: 229 LK 230



 Score = 30.4 bits (67), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 9/133 (6%)

Query: 186 VGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELEL 245
           V +L  L  +N  +NQ+    PL+  NL ++  + + +N++    P  L N + L  L L
Sbjct: 59  VEYLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114

Query: 246 GNNLLRGSIPSEIGKLQELYYLDLSHNFINGKILSELGAIPSIDTVDLSMNNLSGSIP-K 304
            NN +    P  +  L  L  L+LS N I+   +S L  + S+  +  S N ++   P  
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKPLA 170

Query: 305 SVRKVPHLDVLGN 317
           ++  +  LD+  N
Sbjct: 171 NLTTLERLDISSN 183


>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
          Length = 461

 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 109/227 (48%), Gaps = 41/227 (18%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSL--VGNIPSTLGHLTQLTTL 58
           + +L NL  L  ++N +    P  LG L+ L+ L L+ N L  +G    TL  LT LT L
Sbjct: 190 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG----TLASLTNLTDL 243

Query: 59  AIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKL--VGP 116
            +A+N I+   PL    L  L  L L  N+I    P     L  L +L+L++N+L  + P
Sbjct: 244 DLANNQISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 299

Query: 117 IPSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSEN 176
           I                     ++L NLT L+L++NN++   P  +  L +++ L    N
Sbjct: 300 I---------------------SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN 336

Query: 177 KLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYD 223
           K+     SS+ +LT +N L+   NQI+   PL   NL R+  + L D
Sbjct: 337 KVSD--VSSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLND 379



 Score = 30.8 bits (68), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 16/182 (8%)

Query: 141 LVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSN 200
           L NLT ++   N LT   P  L +L ++  + ++ N++    P  + +LT L  L +++N
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117

Query: 201 QINGSIPLE-IGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIG 259
           QI    PL+ + NL R+E   L  N +       L   + L +L  GN +   +    + 
Sbjct: 118 QITDIDPLKNLTNLNRLE---LSSNTISD--ISALSGLTSLQQLNFGNQV---TDLKPLA 169

Query: 260 KLQELYYLDLSHNFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSV-RKVPHLDVLGNN 318
            L  L  LD+S N ++   +S L  + +++++  + N +S   P  +   +  L + GN 
Sbjct: 170 NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 227

Query: 319 LE 320
           L+
Sbjct: 228 LK 229


>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes)  E-Cadherin (Human)
           Recognition Complex
 pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
           Domain, Uncomplexed
 pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
           Domain, Uncomplexed
 pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
           Domain, Uncomplexed
          Length = 466

 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 109/227 (48%), Gaps = 41/227 (18%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSL--VGNIPSTLGHLTQLTTL 58
           + +L NL  L  ++N +    P  LG L+ L+ L L+ N L  +G    TL  LT LT L
Sbjct: 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG----TLASLTNLTDL 248

Query: 59  AIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKL--VGP 116
            +A+N I+   PL    L  L  L L  N+I    P     L  L +L+L++N+L  + P
Sbjct: 249 DLANNQISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 304

Query: 117 IPSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSEN 176
           I                     ++L NLT L+L++NN++   P  +  L +++ L    N
Sbjct: 305 I---------------------SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN 341

Query: 177 KLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYD 223
           K+     SS+ +LT +N L+   NQI+   PL   NL R+  + L D
Sbjct: 342 KVSD--VSSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLND 384



 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 16/182 (8%)

Query: 141 LVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSN 200
           L NLT ++   N LT   P  L +L ++  + ++ N++    P  + +LT L  L +++N
Sbjct: 67  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122

Query: 201 QINGSIPLE-IGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIG 259
           QI    PL+ + NL R+E   L  N +       L   + L +L  GN +   +    + 
Sbjct: 123 QITDIDPLKNLTNLNRLE---LSSNTISD--ISALSGLTSLQQLSFGNQV---TDLKPLA 174

Query: 260 KLQELYYLDLSHNFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSV-RKVPHLDVLGNN 318
            L  L  LD+S N ++   +S L  + +++++  + N +S   P  +   +  L + GN 
Sbjct: 175 NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 232

Query: 319 LE 320
           L+
Sbjct: 233 LK 234


>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
           Kinase Pto
 pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
           Kinase Pto
 pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
           Kinase Pto
 pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
           Kinase Pto
          Length = 327

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 393 RITFQDIIEATEDFHIKYCIGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRN 452
           R+   D+ EAT +F  K+ IG G +G VY+  L  G  VALK+              F  
Sbjct: 28  RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR---RTPESSQGIEEFET 84

Query: 453 KARLLSQIRHRNIVKLYGFCLHRKCMFLIY 482
           +   LS  RH ++V L GFC  R  M LIY
Sbjct: 85  EIETLSFCRHPHLVSLIGFCDERNEMILIY 114


>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
           Bacterial Effector Protein Avrpto
          Length = 321

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 393 RITFQDIIEATEDFHIKYCIGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRN 452
           R+   D+ EAT +F  K+ IG G +G VY+  L  G  VALK+              F  
Sbjct: 28  RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR---RTPESSQGIEEFET 84

Query: 453 KARLLSQIRHRNIVKLYGFCLHRKCMFLIY 482
           +   LS  RH ++V L GFC  R  M LIY
Sbjct: 85  EIETLSFCRHPHLVSLIGFCDERNEMILIY 114


>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
          Length = 562

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 13/160 (8%)

Query: 82  LDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSL--GHLTQLTTLNMRSNLINA 139
           L+ + N    S+      LKRL++L L +N L      +L   +++ L TL++  N +N+
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417

Query: 140 SLVNLTS--------LSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQ 191
              + T         L+L  N LTG +   L    ++++LDL  N+++  IP  V HL  
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQA 474

Query: 192 LNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDNKLDGPIP 231
           L  LN+ SNQ+          L  ++ + L+DN  D   P
Sbjct: 475 LQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514



 Score = 32.3 bits (72), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 12/141 (8%)

Query: 28  LSKLENLHLSSNSLVGNI-PSTLGHLTQLTTLAIASNHINVSI----PLEIGNLNFLQVL 82
           +S LE L +S NSL  +    T      +  L ++SN +  S+    P ++      +VL
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKV------KVL 455

Query: 83  DLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINASLV 142
           DL  N I  SIP    HL+ L+ L+++ N+L          LT L  + +  N  + +  
Sbjct: 456 DLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514

Query: 143 NLTSLSLHYNNLTGPIPSTLG 163
            +  LS   N  +G + ++ G
Sbjct: 515 GIRYLSEWINKHSGVVRNSAG 535



 Score = 31.6 bits (70), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 26/178 (14%)

Query: 30  KLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEI 89
           +LE++   SN  + ++P  L   T+   L+++ N I+     +I  L+ L+VL LS N I
Sbjct: 31  ELESMVDYSNRNLTHVPKDLPPRTK--ALSLSQNSISELRMPDISFLSELRVLRLSHNRI 88

Query: 90  RGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINASLVNLTSLSL 149
           R      F   + L+ LD+S N+L                     N+    + +L  L L
Sbjct: 89  RSLDFHVFLFNQDLEYLDVSHNRL--------------------QNISCCPMASLRHLDL 128

Query: 150 HYNNL-TGPIPSTLGHLNRIRILDLSENKL--VGPIPSSVGHLTQLNTLNMYSNQING 204
            +N+    P+    G+L ++  L LS  K   +  +P +  HL+ +  L++ S  I G
Sbjct: 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCI-LLDLVSYHIKG 185



 Score = 31.2 bits (69), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 13/119 (10%)

Query: 186 VGHLT----QLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLM 241
           VG +T    +L ++  YSN+    +P ++    R +A+ L  N +     P++   S+L 
Sbjct: 22  VGSMTPFSNELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELR 79

Query: 242 ELELGNNLLRGSIPSEIGKLQELYYLDLSHNFINGKILSELGAIP--SIDTVDLSMNNL 298
            L L +N +R          Q+L YLD+SHN      L  +   P  S+  +DLS N+ 
Sbjct: 80  VLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-----RLQNISCCPMASLRHLDLSFNDF 133


>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
          Length = 285

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 10/179 (5%)

Query: 55  LTTLAIASNHINVSIPLEIGNLNFLQVLDLSGN-EIRGSIPSTFGHLKRLKSLDLSQNKL 113
           LT L + SN +          L  L+ LDLS N ++R   P+TF  L RL +L L +  L
Sbjct: 57  LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 116

Query: 114 VGPIPSSLGHLTQLTTLNMRSNLINA-------SLVNLTSLSLHYNNLTGPIPSTLGHLN 166
               P     L  L  L ++ N + A        L NLT L LH N ++         L+
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 176

Query: 167 RIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLE-IGNLKRVEAVKLYDN 224
            +  L L +N++    P +   L +L TL +++N ++ ++P E +  L+ ++ ++L DN
Sbjct: 177 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 234



 Score = 38.9 bits (89), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 54/134 (40%), Gaps = 1/134 (0%)

Query: 7   LVHLDLSDN-YLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHI 65
           L  LDLSDN  L    P T   L +L  LHL    L    P     L  L  L +  N +
Sbjct: 81  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 140

Query: 66  NVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLT 125
                    +L  L  L L GN I       F  L  L  L L QN++    P +   L 
Sbjct: 141 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 200

Query: 126 QLTTLNMRSNLINA 139
           +L TL + +N ++A
Sbjct: 201 RLMTLYLFANNLSA 214


>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
           Domain Reveals A Convergent Recognition Scaffold
           Mediating Inhibition Of Myelination
          Length = 285

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 10/179 (5%)

Query: 55  LTTLAIASNHINVSIPLEIGNLNFLQVLDLSGN-EIRGSIPSTFGHLKRLKSLDLSQNKL 113
           LT L + SN +          L  L+ LDLS N ++R   P+TF  L RL +L L +  L
Sbjct: 58  LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117

Query: 114 VGPIPSSLGHLTQLTTLNMRSNLINA-------SLVNLTSLSLHYNNLTGPIPSTLGHLN 166
               P     L  L  L ++ N + A        L NLT L LH N ++         L+
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177

Query: 167 RIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLE-IGNLKRVEAVKLYDN 224
            +  L L +N++    P +   L +L TL +++N ++ ++P E +  L+ ++ ++L DN
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235



 Score = 38.9 bits (89), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 54/134 (40%), Gaps = 1/134 (0%)

Query: 7   LVHLDLSDN-YLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHI 65
           L  LDLSDN  L    P T   L +L  LHL    L    P     L  L  L +  N +
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141

Query: 66  NVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLT 125
                    +L  L  L L GN I       F  L  L  L L QN++    P +   L 
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 126 QLTTLNMRSNLINA 139
           +L TL + +N ++A
Sbjct: 202 RLMTLYLFANNLSA 215


>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
          Length = 727

 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 67/125 (53%), Gaps = 12/125 (9%)

Query: 110 QNKLVGPIPS----SLGH---LTQLTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPSTL 162
           +N++V P  S     L H   L+ L   N+ +N+       LT L L+ N+LT  +P+ +
Sbjct: 210 ENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDF--LTRLYLNGNSLTE-LPAEI 266

Query: 163 GHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLY 222
            +L+ +R+LDLS N+L   +P+ +G   QL     + N +  ++P E GNL  ++ + + 
Sbjct: 267 KNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324

Query: 223 DNKLD 227
            N L+
Sbjct: 325 GNPLE 329



 Score = 41.2 bits (95), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 3/107 (2%)

Query: 38  SNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTF 97
           SN  + NI + +     LT L +  N +   +P EI NL+ L+VLDLS N +  S+P+  
Sbjct: 232 SNLQIFNISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRL-TSLPAEL 289

Query: 98  GHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINASLVNL 144
           G   +LK      N +V  +P   G+L  L  L +  N +    + +
Sbjct: 290 GSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI 335


>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
           Vlra.R5.1
 pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
           Vlra.R5.1
          Length = 251

 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 4/132 (3%)

Query: 10  LDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSI 69
           LDL    L      T   L+KL  L+L  N L          LT+L TL +A+N +  S+
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASL 98

Query: 70  PLEI-GNLNFLQVLDLSGNEIRGSIPS-TFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQL 127
           PL +  +L  L  L L GN+++ S+PS  F  L +LK L L+ N+L      +   LT L
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157

Query: 128 TTLNMRSNLINA 139
            TL++ +N + +
Sbjct: 158 QTLSLSTNQLQS 169



 Score = 41.2 bits (95), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 7/153 (4%)

Query: 82  LDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINA-- 139
           LDL    +     +TF  L +L  L+L  N+L          LT+L TL + +N + +  
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 140 -----SLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNT 194
                 L  L  L L  N L          L +++ L L+ N+L      +   LT L T
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159

Query: 195 LNMYSNQINGSIPLEIGNLKRVEAVKLYDNKLD 227
           L++ +NQ+          L +++ + L+ N+ D
Sbjct: 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192



 Score = 41.2 bits (95), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 4/147 (2%)

Query: 4   LRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASN 63
           L  L  L+L  N L          L++L  L L++N L         HLTQL  L +  N
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117

Query: 64  HINVSIPLEIGN-LNFLQVLDLSGNEIRGSIPS-TFGHLKRLKSLDLSQNKLVGPIPSSL 121
            +  S+P  + + L  L+ L L+ N+++ SIP+  F  L  L++L LS N+L      + 
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175

Query: 122 GHLTQLTTLNMRSNLINASLVNLTSLS 148
             L +L T+ +  N  + S   +  LS
Sbjct: 176 DRLGKLQTITLFGNQFDCSRCEILYLS 202



 Score = 40.8 bits (94), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 7/137 (5%)

Query: 76  LNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSN 135
           L  L  L+L  N+++      F  L  L +L L+ N+L         HLTQL  L +  N
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117

Query: 136 LINA-------SLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGH 188
            + +        L  L  L L+ N L          L  ++ L LS N+L      +   
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177

Query: 189 LTQLNTLNMYSNQINGS 205
           L +L T+ ++ NQ + S
Sbjct: 178 LGKLQTITLFGNQFDCS 194



 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 12/165 (7%)

Query: 110 QNKLVGPIPSSLGHLT-----QLTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPSTLGH 164
           Q K +  +PS +   T     Q T L   S+     L  LT L+L YN L          
Sbjct: 22  QGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81

Query: 165 LNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGN-LKRVEAVKLYD 223
           L  +  L L+ N+L         HLTQL+ L +  NQ+  S+P  + + L +++ ++L  
Sbjct: 82  LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNT 140

Query: 224 NKLDGPIPPELMNCSKLMELELGNNLLRGSIP----SEIGKLQEL 264
           N+L           + L  L L  N L+ S+P      +GKLQ +
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTI 184



 Score = 32.7 bits (73), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 14/154 (9%)

Query: 82  LDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINA-- 139
           +D  G  +  S+PS  G     + LDL    L     ++   LT+LT LN+  N +    
Sbjct: 19  VDCQGKSLD-SVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75

Query: 140 -----SLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSV-GHLTQLN 193
                 L  L +L L  N L         HL ++  L L  N+L   +PS V   LT+L 
Sbjct: 76  AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLK 134

Query: 194 TLNMYSNQINGSIPL-EIGNLKRVEAVKLYDNKL 226
            L + +NQ+  SIP      L  ++ + L  N+L
Sbjct: 135 ELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167


>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
           Vlra.R2.1 In Complex With Hen Egg Lysozyme
          Length = 251

 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 4/132 (3%)

Query: 10  LDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSI 69
           LDL    L      T   L+KL  L+L  N L          LT+L TL +A+N +  S+
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASL 98

Query: 70  PLEI-GNLNFLQVLDLSGNEIRGSIPS-TFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQL 127
           PL +  +L  L  L L GN+++ S+PS  F  L +LK L L+ N+L      +   LT L
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157

Query: 128 TTLNMRSNLINA 139
            TL++ +N + +
Sbjct: 158 QTLSLSTNQLQS 169



 Score = 41.2 bits (95), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 7/153 (4%)

Query: 82  LDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINA-- 139
           LDL    +     +TF  L +L  L+L  N+L          LT+L TL + +N + +  
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 140 -----SLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNT 194
                 L  L  L L  N L          L +++ L L+ N+L      +   LT L T
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159

Query: 195 LNMYSNQINGSIPLEIGNLKRVEAVKLYDNKLD 227
           L++ +NQ+          L +++ + L+ N+ D
Sbjct: 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192



 Score = 40.4 bits (93), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 21/176 (11%)

Query: 32  ENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRG 91
           E L L S  L     +T   LT+LT L +  N +         +L  L  L L+ N++  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-A 96

Query: 92  SIP-STFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINASLVNLTSLSLH 150
           S+P   F HL +L  L L  N+L          LT+L  L + +N + +           
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS----------- 145

Query: 151 YNNLTGPIPS-TLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGS 205
                  IP+     L  ++ L LS N+L      +   L +L T+ ++ NQ + S
Sbjct: 146 -------IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194



 Score = 40.4 bits (93), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 4/139 (2%)

Query: 4   LRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASN 63
           L  L  L+L  N L          L++L  L L++N L         HLTQL  L +  N
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117

Query: 64  HINVSIPLEIGN-LNFLQVLDLSGNEIRGSIPS-TFGHLKRLKSLDLSQNKLVGPIPSSL 121
            +  S+P  + + L  L+ L L+ N+++ SIP+  F  L  L++L LS N+L      + 
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175

Query: 122 GHLTQLTTLNMRSNLINAS 140
             L +L T+ +  N  + S
Sbjct: 176 DRLGKLQTITLFGNQFDCS 194



 Score = 40.0 bits (92), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 12/165 (7%)

Query: 110 QNKLVGPIPSSLGHLT-----QLTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPSTLGH 164
           Q K +  +PS +   T     Q T L   S+     L  LT L+L YN L          
Sbjct: 22  QGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81

Query: 165 LNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGN-LKRVEAVKLYD 223
           L  +  L L+ N+L         HLTQL+ L +  NQ+  S+P  + + L +++ ++L  
Sbjct: 82  LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNT 140

Query: 224 NKLDGPIPPELMNCSKLMELELGNNLLRGSIP----SEIGKLQEL 264
           N+L           + L  L L  N L+ S+P      +GKLQ +
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTI 184


>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
           Binding Of A Tri-Acylated Lipopeptide
          Length = 520

 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 88/208 (42%), Gaps = 45/208 (21%)

Query: 26  GRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDLS 85
            ++S   +L  S+N L   +    GHLT+L TL +  N                Q+ +LS
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN----------------QLKELS 364

Query: 86  GNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQ-LTTLNMRSNLINASLVNL 144
                  I      +K L+ LD+SQN +           T+ L +LNM SN++  ++   
Sbjct: 365 K------IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418

Query: 145 TSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQING 204
                        +P       RI++LDL  NK +  IP  V  L  L  LN+ SNQ+  
Sbjct: 419 -------------LPP------RIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQL-K 457

Query: 205 SIPLEIGN-LKRVEAVKLYDNKLDGPIP 231
           S+P  I + L  ++ + L+ N  D   P
Sbjct: 458 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485



 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 20/179 (11%)

Query: 2   GRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSL--VGNIPSTLGHLTQLTTLA 59
            ++   +HLD S+N L   +    G L++LE L L  N L  +  I      +  L  L 
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380

Query: 60  IASNHINVSIPLEIGNLNF---LQVLDLSGNEIRGSIPSTFGHL-KRLKSLDLSQNKLVG 115
           I+ N  +VS   + G+ ++   L  L++S N +  +I   F  L  R+K LDL  NK + 
Sbjct: 381 ISQN--SVSYDEKKGDCSWTKSLLSLNMSSNILTDTI---FRCLPPRIKVLDLHSNK-IK 434

Query: 116 PIPSSLGHLTQLTTLNMRSNLINA-------SLVNLTSLSLHYNNLTGPIPSTLGHLNR 167
            IP  +  L  L  LN+ SN + +        L +L  + LH N      P  + +L+R
Sbjct: 435 SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR-IDYLSR 492



 Score = 37.7 bits (86), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 69/154 (44%), Gaps = 24/154 (15%)

Query: 37  SSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPST 96
           S N L+ ++P  L   T  T L I+ N+I+     +I +L+ L++L +S N I+    S 
Sbjct: 8   SKNGLI-HVPKDLSQKT--TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV 64

Query: 97  FGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHYNNLTG 156
           F   + L+ LDLS NKLV        H T                VNL  L L +N    
Sbjct: 65  FKFNQELEYLDLSHNKLVKIS----CHPT----------------VNLKHLDLSFNAFDA 104

Query: 157 -PIPSTLGHLNRIRILDLSENKLVGPIPSSVGHL 189
            PI    G++++++ L LS   L       + HL
Sbjct: 105 LPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138



 Score = 31.2 bits (69), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 29/155 (18%)

Query: 171 LDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDNKLDGPI 230
           LD S N L   +  + GHLT+L TL +  NQ           LK +  +     ++    
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQ-----------LKELSKIAEMTTQMKS-- 375

Query: 231 PPELMNCSKLMELELGNNLLR-GSIPSEIGKLQELYYLDLSHNFINGKILSELGAIPSID 289
                    L +L++  N +       +    + L  L++S N +   I   L   P I 
Sbjct: 376 ---------LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIK 424

Query: 290 TVDLSMNNLSGSIPKSVRKVP---HLDVLGNNLEG 321
            +DL  N +  SIPK V K+     L+V  N L+ 
Sbjct: 425 VLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKS 458


>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
           Ra Complex
 pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
           Ra Complex
          Length = 605

 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 88/200 (44%), Gaps = 21/200 (10%)

Query: 6   NLVHLDLSDNYLWGYIPPTLGRLSKLENLHLS-SNSLVGNIPSTLGHLTQLTTLAIASNH 64
           +L +LDLS N +       LG L +LE+L    SN    +  S    L  L  L I+  H
Sbjct: 374 SLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 65  INVSIPLEIGNLNFLQVLDLSGNEIRGS-IPSTFGHLKRLKSLDLSQNKLVGPIPSSLGH 123
             V+       L+ L+VL ++GN  + + +P  F  L+ L  LDLSQ +L    P++   
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 124 LTQLTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIP 183
           L+ L  LNM  N       N  SL       T P       LN +++LD S N ++    
Sbjct: 493 LSSLQVLNMSHN-------NFFSLD------TFPYKC----LNSLQVLDYSLNHIMTSKK 535

Query: 184 SSVGHL-TQLNTLNMYSNQI 202
             + H  + L  LN+  N  
Sbjct: 536 QELQHFPSSLAFLNLTQNDF 555



 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 2/134 (1%)

Query: 4   LRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGN-IPSTLGHLTQLTTLAIAS 62
           LRNL++LD+S  +           LS LE L ++ NS   N +P     L  LT L ++ 
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 63  NHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLG 122
             +    P    +L+ LQVL++S N         +  L  L+ LD S N ++      L 
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 539

Query: 123 HL-TQLTTLNMRSN 135
           H  + L  LN+  N
Sbjct: 540 HFPSSLAFLNLTQN 553



 Score = 32.0 bits (71), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 1/88 (1%)

Query: 3   RLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIAS 62
            LRNL  LDLS   L    P     LS L+ L++S N+           L  L  L  + 
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 527

Query: 63  NHINVSIPLEIGNL-NFLQVLDLSGNEI 89
           NHI  S   E+ +  + L  L+L+ N+ 
Sbjct: 528 NHIMTSKKQELQHFPSSLAFLNLTQNDF 555



 Score = 30.8 bits (68), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 56/147 (38%), Gaps = 16/147 (10%)

Query: 32  ENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRG 91
           +NL LS N L      +     +L  L ++   I         +L+ L  L L+GN I+ 
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 92  SIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHY 151
                F  L  L+ L   +  L       +GHL  L  LN+  NLI +            
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS------------ 138

Query: 152 NNLTGPIPSTLGHLNRIRILDLSENKL 178
                 +P    +L  +  LDLS NK+
Sbjct: 139 ----FKLPEYFSNLTNLEHLDLSSNKI 161


>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
           And T399i In Complex With Md-2 And Lps
 pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
           And T399i In Complex With Md-2 And Lps
          Length = 635

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 88/200 (44%), Gaps = 21/200 (10%)

Query: 6   NLVHLDLSDNYLWGYIPPTLGRLSKLENLHLS-SNSLVGNIPSTLGHLTQLTTLAIASNH 64
           +L +LDLS N +       LG L +LE+L    SN    +  S    L  L  L I+  H
Sbjct: 398 SLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 456

Query: 65  INVSIPLEIGNLNFLQVLDLSGNEIRGS-IPSTFGHLKRLKSLDLSQNKLVGPIPSSLGH 123
             V+       L+ L+VL ++GN  + + +P  F  L+ L  LDLSQ +L    P++   
Sbjct: 457 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 516

Query: 124 LTQLTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIP 183
           L+ L  LNM  N       N  SL       T P       LN +++LD S N ++    
Sbjct: 517 LSSLQVLNMSHN-------NFFSLD------TFPYKC----LNSLQVLDYSLNHIMTSKK 559

Query: 184 SSVGHL-TQLNTLNMYSNQI 202
             + H  + L  LN+  N  
Sbjct: 560 QELQHFPSSLAFLNLTQNDF 579



 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 2/134 (1%)

Query: 4   LRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGN-IPSTLGHLTQLTTLAIAS 62
           LRNL++LD+S  +           LS LE L ++ NS   N +P     L  LT L ++ 
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503

Query: 63  NHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLG 122
             +    P    +L+ LQVL++S N         +  L  L+ LD S N ++      L 
Sbjct: 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 563

Query: 123 HL-TQLTTLNMRSN 135
           H  + L  LN+  N
Sbjct: 564 HFPSSLAFLNLTQN 577



 Score = 32.0 bits (71), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 1/88 (1%)

Query: 3   RLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIAS 62
            LRNL  LDLS   L    P     LS L+ L++S N+           L  L  L  + 
Sbjct: 492 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 551

Query: 63  NHINVSIPLEIGNL-NFLQVLDLSGNEI 89
           NHI  S   E+ +  + L  L+L+ N+ 
Sbjct: 552 NHIMTSKKQELQHFPSSLAFLNLTQNDF 579



 Score = 31.2 bits (69), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 56/147 (38%), Gaps = 16/147 (10%)

Query: 32  ENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRG 91
           +NL LS N L      +     +L  L ++   I         +L+ L  L L+GN I+ 
Sbjct: 55  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114

Query: 92  SIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHY 151
                F  L  L+ L   +  L       +GHL  L  LN+  NLI +            
Sbjct: 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS------------ 162

Query: 152 NNLTGPIPSTLGHLNRIRILDLSENKL 178
                 +P    +L  +  LDLS NK+
Sbjct: 163 ----FKLPEYFSNLTNLEHLDLSSNKI 185


>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
           Receptors A29
          Length = 270

 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 88/201 (43%), Gaps = 10/201 (4%)

Query: 34  LHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSI 93
           +  SS  L   IPS +   T+   L + SN ++         L  L++L L+ N+++   
Sbjct: 21  VDCSSKKLTA-IPSNIPADTK--KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77

Query: 94  PSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINA-------SLVNLTS 146
              F  LK L++L ++ NKL          L  L  L +  N + +       SL  LT 
Sbjct: 78  AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY 137

Query: 147 LSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSI 206
           LSL YN L          L  ++ L L  N+L      +   LT+L TL + +NQ+    
Sbjct: 138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197

Query: 207 PLEIGNLKRVEAVKLYDNKLD 227
                +L++++ ++L +N  D
Sbjct: 198 EGAFDSLEKLKMLQLQENPWD 218



 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 2/134 (1%)

Query: 3   RLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIAS 62
            L+NL  L ++DN L         +L  L  L L  N L    P     LT+LT L++  
Sbjct: 83  ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142

Query: 63  NHINVSIPLEI-GNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSL 121
           N +  S+P  +   L  L+ L L  N+++      F  L  LK+L L  N+L      + 
Sbjct: 143 NELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201

Query: 122 GHLTQLTTLNMRSN 135
             L +L  L ++ N
Sbjct: 202 DSLEKLKMLQLQEN 215



 Score = 41.2 bits (95), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 52/133 (39%)

Query: 3   RLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIAS 62
           RL  L  L L+DN L          L  LE L ++ N L          L  L  L +  
Sbjct: 59  RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118

Query: 63  NHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLG 122
           N +    P    +L  L  L L  NE++      F  L  LK L L  N+L      +  
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD 178

Query: 123 HLTQLTTLNMRSN 135
            LT+L TL + +N
Sbjct: 179 KLTELKTLKLDNN 191



 Score = 34.3 bits (77), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 73/173 (42%), Gaps = 6/173 (3%)

Query: 105 SLDLSQNKLVGPIPSSLGHLTQLTTL--NMRSNLINASLVNLTSLSLHY--NNLTGPIPS 160
           S+D S  KL   IPS++   T+   L  N  S+L + +   LT L L Y  +N    +P+
Sbjct: 20  SVDCSSKKLTA-IPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78

Query: 161 -TLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAV 219
                L  +  L +++NKL          L  L  L +  NQ+    P    +L ++  +
Sbjct: 79  GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL 138

Query: 220 KLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIGKLQELYYLDLSHN 272
            L  N+L           + L EL L NN L+        KL EL  L L +N
Sbjct: 139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191


>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
           An Electron Microscopy Single Particle Reconstruction
 pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
           An Electron Microscopy Single Particle Reconstruction
          Length = 844

 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 132/305 (43%), Gaps = 45/305 (14%)

Query: 4   LRNLVHLDLSDNYLWG-YIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLT--QLTTLAI 60
           L+ L  LDLS N +   Y+ P+ G+L+ L+++  SSN +       L  L    L+  ++
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181

Query: 61  ASNHINVSIPLEIGNL------NFLQVLDLSGNEIRGSIPSTFGH-LKRLKSLDL----- 108
           A+N +   + ++ G          L++LD+SGN     I   F + + + ++  L     
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241

Query: 109 --------------SQNKLVGPIPSSLGHLT----QLTTLNMRSNLINASLVNLTSLSLH 150
                          QN   G   SS+ HL      + +LN R   +  +L +L  L+L 
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR---VFETLKDLKVLNLA 298

Query: 151 YNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEI 210
           YN +          L+ +++L+LS N L     S+   L ++  +++  N I        
Sbjct: 299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358

Query: 211 GNLKRVEAVKLYDNKLDG-----PIPPELMNCSKLMEL---ELGNNLLRGSIPSEIGKLQ 262
             L++++ + L DN L        IP   ++ +KL+ L    L  NL+  S  + +  L 
Sbjct: 359 KFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLS-ENRLENLD 417

Query: 263 ELYYL 267
            LY+L
Sbjct: 418 ILYFL 422



 Score = 37.4 bits (85), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 17/178 (9%)

Query: 9   HLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVS 68
           HLDLS  +++         L  L+ L+L+ N +          L  L  L ++ N +   
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329

Query: 69  IPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKL--VGPIPS------S 120
                  L  +  +DL  N I      TF  L++L++LDL  N L  +  IPS      S
Sbjct: 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLS 389

Query: 121 LGHLTQLTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKL 178
              L  L  +N+ +NLI+ S   L +L + Y  L  P          ++IL L++N+ 
Sbjct: 390 GNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP---------HLQILILNQNRF 438



 Score = 35.4 bits (80), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 106/284 (37%), Gaps = 60/284 (21%)

Query: 75  NLNFLQVLDLSGNEIRG-SIPSTFGHLKRLKSLDLSQN---------------------- 111
           NL  L  LDLS N+IR   +  +FG L  LKS+D S N                      
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180

Query: 112 ---------------KLVGPIPSSLGHLTQLT----TLNMRSNLINA-------SLV--- 142
                          K + P  + +  +  ++    T+++  N  NA       SL+   
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240

Query: 143 NLTSLSLHYNNLTGPIPSTLGHLNR--IRILDLSENKLVGPIPSSVGHLTQLNTLNMYSN 200
           ++      ++N+  P  +T   L R  +R LDLS   +          L  L  LN+  N
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300

Query: 201 QINGSIPLEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIGK 260
           +IN         L  ++ + L  N L            K+  ++L  N +          
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360

Query: 261 LQELYYLDLSHNFINGKILSELGAIPSIDTVDLSMNNLSGSIPK 304
           L++L  LDL  N      L+ +  IPSI  + LS N L  ++PK
Sbjct: 361 LEKLQTLDLRDN-----ALTTIHFIPSIPDIFLSGNKLV-TLPK 398


>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
 pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
 pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
 pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
 pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
 pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
          Length = 306

 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 32  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 92  RHPNILRLYGYFHDATRVYLI 112


>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
 pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
          Length = 306

 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 32  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 92  RHPNILRLYGYFHDATRVYLI 112


>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
           Receptors Of Jawless Vertebrates By Module Engineering
 pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
           Receptors Of Jawless Vertebrates By Module Engineering
          Length = 272

 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 23/185 (12%)

Query: 49  LGHLTQLTTLAIASNHI-NVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLD 107
           + +L  +  LA+  N + ++S   E+ NL +L    L+GN+++      F  L  LK L 
Sbjct: 59  IQYLPNVRYLALGGNKLHDISALKELTNLTYLI---LTGNQLQSLPNGVFDKLTNLKELV 115

Query: 108 LSQNKLVGPIPSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPSTLGHLNR 167
           L +N+L   +P   G   +LT              NLT L+L +N L          L  
Sbjct: 116 LVENQLQS-LPD--GVFDKLT--------------NLTYLNLAHNQLQSLPKGVFDKLTN 158

Query: 168 IRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGN-LKRVEAVKLYDNKL 226
           +  LDLS N+L          LTQL  L +Y NQ+  S+P  + + L  ++ + L+DN  
Sbjct: 159 LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPW 217

Query: 227 DGPIP 231
           D   P
Sbjct: 218 DCTCP 222



 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 2/166 (1%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAI 60
           +  L NL +L L+ N L         +L+ L+ L L  N L          LT LT L +
Sbjct: 81  LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140

Query: 61  ASNHINVSIPLEIGN-LNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPS 119
           A N +  S+P  + + L  L  LDLS N+++      F  L +LK L L QN+L      
Sbjct: 141 AHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG 199

Query: 120 SLGHLTQLTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
               LT L  + +  N  + +   +  LS   N  +G + ++ G +
Sbjct: 200 VFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSV 245


>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
           Threonine Kinase
          Length = 297

 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 23  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 82

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 83  RHPNILRLYGYFHDATRVYLI 103


>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
           Pyrazolopyridine- Sulfonamides As Potent
           Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
 pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
           Pyrazolopyridine- Sulfonamides As Potent
           Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
 pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
 pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
          Length = 271

 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 69  RHPNILRLYGYFHDATRVYLI 89


>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
           Hagfish Vlrb.61
 pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
           Hagfish Vlrb.61
 pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
           Hagfish Vlrb.61
 pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
           Hagfish Vlrb.61
          Length = 306

 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 88/200 (44%), Gaps = 21/200 (10%)

Query: 6   NLVHLDLSDNYLWGYIPPTLGRLSKLENLHLS-SNSLVGNIPSTLGHLTQLTTLAIASNH 64
           +L +LDLS N +       LG L +LE+L    SN    +  S    L  L  L I+  H
Sbjct: 79  SLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 65  INVSIPLEIGNLNFLQVLDLSGNEIRGS-IPSTFGHLKRLKSLDLSQNKLVGPIPSSLGH 123
             V+       L+ L+VL ++GN  + + +P  F  L+ L  LDLSQ +L    P++   
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

Query: 124 LTQLTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIP 183
           L+ L  LNM  N       N  SL       T P       LN +++LD S N ++    
Sbjct: 198 LSSLQVLNMSHN-------NFFSLD------TFPYKC----LNSLQVLDYSLNHIMTSKK 240

Query: 184 SSVGHL-TQLNTLNMYSNQI 202
             + H  + L  LN+  N  
Sbjct: 241 QELQHFPSSLAFLNLTQNDF 260



 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 2/134 (1%)

Query: 4   LRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGN-IPSTLGHLTQLTTLAIAS 62
           LRNL++LD+S  +           LS LE L ++ NS   N +P     L  LT L ++ 
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 63  NHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLG 122
             +    P    +L+ LQVL++S N         +  L  L+ LD S N ++      L 
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244

Query: 123 HL-TQLTTLNMRSN 135
           H  + L  LN+  N
Sbjct: 245 HFPSSLAFLNLTQN 258



 Score = 34.3 bits (77), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 12/178 (6%)

Query: 34  LHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNL--NFLQVLDLSGNEIRG 91
           L L SN L          LTQLT L+++SN ++        +     L+ LDLS N +  
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI- 91

Query: 92  SIPSTFGHLKRLKSLDLSQNKLVG----PIPSSLGHLTQL----TTLNMRSNLINASLVN 143
           ++ S F  L++L+ LD   + L       +  SL +L  L    T   +  N I   L +
Sbjct: 92  TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151

Query: 144 LTSLSLHYNNLT-GPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSN 200
           L  L +  N+     +P     L  +  LDLS+ +L    P++   L+ L  LNM  N
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209



 Score = 32.3 bits (72), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 1/88 (1%)

Query: 3   RLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIAS 62
            LRNL  LDLS   L    P     LS L+ L++S N+           L  L  L  + 
Sbjct: 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232

Query: 63  NHINVSIPLEIGNL-NFLQVLDLSGNEI 89
           NHI  S   E+ +  + L  L+L+ N+ 
Sbjct: 233 NHIMTSKKQELQHFPSSLAFLNLTQNDF 260


>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A
           Diaminopyrimidine
          Length = 281

 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 67  RHPNILRLYGYFHDATRVYLI 87


>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
 pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
 pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
 pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
          Length = 285

 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 71  RHPNILRLYGYFHDATRVYLI 91


>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine
           Inhibitor
          Length = 272

 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 69  RHPNILRLYGYFHDATRVYLI 89


>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300
          Length = 280

 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 66  RHPNILRLYGYFHDATRVYLI 86


>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
 pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
           A Novel Class Of High Affinity Disubstituted Pyrimidine
           Inhibitors
 pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
 pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
 pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
           Aurora Kinase Inhibitors With Improved Off Target Kinase
           Selectivity
          Length = 272

 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 10  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 69

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 70  RHPNILRLYGYFHDATRVYLI 90


>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
           Pentacyclic Inhibitor
 pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
           Pentacyclic Inhibitor
          Length = 268

 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR  + K ++ALK L              R +  + S +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 66  RHPNILRLYGYFHDSTRVYLI 86


>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
 pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
 pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
 pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
           Inhibitor
 pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
           Inhibitor
          Length = 267

 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 5   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 64

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 65  RHPNILRLYGYFHDATRVYLI 85


>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
 pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
          Length = 280

 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 66  RHPNILRLYGYFHDATRVYLI 86


>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
           Compound 10
          Length = 268

 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 66  RHPNILRLYGYFHDATRVYLI 86


>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
           Tpx2
          Length = 268

 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 66  RHPNILRLYGYFHDATRVYLI 86


>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a
          Length = 282

 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 8   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 68  RHPNILRLYGYFHDATRVYLI 88


>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
 pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
          Length = 285

 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 71  RHPNILRLYGYFHDATRVYLI 91


>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
           Inhibitor
          Length = 283

 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 69  RHPNILRLYGYFHDATRVYLI 89


>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A
           Gsk3beta Inhibitor
          Length = 287

 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 66  RHPNILRLYGYFHDATRVYLI 86


>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
           Thr288 And Bound To Tpx2 1-43
 pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
           Thr287, Thr288
          Length = 282

 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 8   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 68  RHPNILRLYGYFHDATRVYLI 88


>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
 pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
 pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
 pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
 pdb|3H10|A Chain A, Aurora A Inhibitor Complex
 pdb|3H10|B Chain B, Aurora A Inhibitor Complex
 pdb|3H10|D Chain D, Aurora A Inhibitor Complex
 pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
           Inhibitor
          Length = 268

 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 66  RHPNILRLYGYFHDATRVYLI 86


>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A
           5-Aminopyrimidinyl Quinazoline Inhibitor
 pdb|2C6E|B Chain B, Aurora A Kinase Activated Mutant (T287d) In Complex With A
           5-Aminopyrimidinyl Quinazoline Inhibitor
          Length = 283

 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 71  RHPNILRLYGYFHDATRVYLI 91


>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
           Inhibitor
 pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
           Inhibitor
 pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
           Inhibitor
          Length = 275

 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 69  RHPNILRLYGYFHDATRVYLI 89


>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
          Length = 283

 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 69  RHPNILRLYGYFHDATRVYLI 89


>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With
           Adpnp
          Length = 275

 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 66  RHPNILRLYGYFHDATRVYLI 86


>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
           Inhibitor
 pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
           Inhibitor
          Length = 275

 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 69  RHPNILRLYGYFHDATRVYLI 89


>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
 pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
 pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
 pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
 pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
 pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
 pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
 pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
 pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
 pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
 pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
 pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
 pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
 pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
 pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
 pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
 pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
 pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
 pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
 pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
 pdb|4DEE|A Chain A, Aurora A In Complex With Adp
          Length = 279

 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 67  RHPNILRLYGYFHDATRVYLI 87


>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A
           Inhibitors: Structure Basis For Potency And Specificity
 pdb|3K5U|A Chain A, Identification, Sar Studies And X-Ray Cocrystal Analysis
           Of A Novel Furano-Pyrimidine Aurora Kinase A Inhibitor
 pdb|3M11|A Chain A, Crystal Structure Of Aurora A Kinase Complexed With
           Inhibitor
          Length = 279

 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 67  RHPNILRLYGYFHDATRVYLI 87


>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
          Length = 285

 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 71  RHPNILRLYGYFHDATRVYLI 91


>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
          Length = 285

 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 71  RHPNILRLYGYFHDATRVYLI 91


>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
          Length = 262

 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           A EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +
Sbjct: 3   ALEDFEIGRPLGKGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 62

Query: 461 RHRNIVKLYGFCLHRKCMFLI 481
           RH NI++LYG+      ++LI
Sbjct: 63  RHPNILRLYGYFHDATRVYLI 83


>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
 pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
 pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
 pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
          Length = 477

 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 111/270 (41%), Gaps = 12/270 (4%)

Query: 6   NLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHI 65
           +L  L+L++N +    P     L  L  L L SN L          L+ LT L I+ N I
Sbjct: 57  HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116

Query: 66  NVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLT 125
            + +     +L  L+ L++  N++       F  L  L+ L L +  L      +L HL 
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176

Query: 126 QLTTLNMRSNLINA-------SLVNLTSLSL-HYNNLTGPIPSTLGHLNRIRILDLSENK 177
            L  L +R   INA        L  L  L + H+  L    P+ L  LN +  L ++   
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCN 235

Query: 178 LVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDNKLDGPIPPELMNC 237
           L      +V HL  L  LN+  N I+      +  L R++ ++L   +L    P      
Sbjct: 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295

Query: 238 SKLMELEL-GNNL--LRGSIPSEIGKLQEL 264
           + L  L + GN L  L  S+   +G L+ L
Sbjct: 296 NYLRVLNVSGNQLTTLEESVFHSVGNLETL 325



 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 95/224 (42%), Gaps = 19/224 (8%)

Query: 4   LRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASN 63
           L NL  LD+S+N +   +      L  L++L +  N LV         L  L  L +   
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162

Query: 64  HINVSIPLE-IGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLG 122
           ++  SIP E + +L+ L VL L    I      +F  L RLK L++S             
Sbjct: 163 NL-TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS------------- 208

Query: 123 HLTQLTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPI 182
           H   L T  M  N +    +NLTSLS+ + NLT      + HL  +R L+LS N +    
Sbjct: 209 HWPYLDT--MTPNCLYG--LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE 264

Query: 183 PSSVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDNKL 226
            S +  L +L  + +   Q+    P     L  +  + +  N+L
Sbjct: 265 GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308



 Score = 37.0 bits (84), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 81/204 (39%), Gaps = 7/204 (3%)

Query: 4   LRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASN 63
           L NL  L++ DN L          L+ LE L L   +L       L HL  L  L +   
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186

Query: 64  HINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGH 123
           +IN         L  L+VL++S      ++     +   L SL ++   L      ++ H
Sbjct: 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246

Query: 124 LTQLTTLNMRSNLINA-------SLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSEN 176
           L  L  LN+  N I+         L+ L  + L    L    P     LN +R+L++S N
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306

Query: 177 KLVGPIPSSVGHLTQLNTLNMYSN 200
           +L     S    +  L TL + SN
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSN 330



 Score = 35.0 bits (79), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 42/87 (48%)

Query: 28  LSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGN 87
           L  L  L+LS N +     S L  L +L  + +    + V  P     LN+L+VL++SGN
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306

Query: 88  EIRGSIPSTFGHLKRLKSLDLSQNKLV 114
           ++     S F  +  L++L L  N L 
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPLA 333


>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
          Length = 315

 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 6/79 (7%)

Query: 404 EDFHIKYCIGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           ++  ++  +G G +G V +A+    K VA+K++             F  + R LS++ H 
Sbjct: 9   KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIE-----SESERKAFIVELRQLSRVNHP 62

Query: 464 NIVKLYGFCLHRKCMFLIY 482
           NIVKLYG CL+  C+ + Y
Sbjct: 63  NIVKLYGACLNPVCLVMEY 81


>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
          Length = 192

 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 7/105 (6%)

Query: 36  LSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPS 95
           +SS+ L G +P        L  L +  N +    P      + +Q L L  N+I+     
Sbjct: 44  ISSDGLFGRLP-------HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK 96

Query: 96  TFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINAS 140
            F  L +LK+L+L  N++   +P S  HL  LT+LN+ SN  N +
Sbjct: 97  MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141



 Score = 40.8 bits (94), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 18/126 (14%)

Query: 84  LSGNEI-RGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINASLV 142
           L+ NE+ R S    FG L  L  L+L +N+L G  P++    + +  L +  N I   + 
Sbjct: 36  LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EIS 94

Query: 143 NLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQI 202
           N   L LH                +++ L+L +N++   +P S  HL  L +LN+ SN  
Sbjct: 95  NKMFLGLH----------------QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138

Query: 203 NGSIPL 208
           N +  L
Sbjct: 139 NCNCHL 144



 Score = 34.3 bits (77), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 25/119 (21%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPT-----------LGR-------------LSKLENLHL 36
            GRL +LV L+L  N L G  P             LG              L +L+ L+L
Sbjct: 50  FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109

Query: 37  SSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPS 95
             N +   +P +  HL  LT+L +ASN  N +  L      +L+   L+G   R   PS
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPS 167


>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
           With Compound 16
          Length = 271

 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 32/70 (45%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           IG GG+G VYRA     +V      H             R +A+L + ++H NI+ L G 
Sbjct: 15  IGIGGFGKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGV 74

Query: 472 CLHRKCMFLI 481
           CL    + L+
Sbjct: 75  CLKEPNLCLV 84


>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
           Tlr5 In Complex With Salmonella Flagellin
 pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
           Tlr5 In Complex With Salmonella Flagellin
          Length = 455

 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 60/142 (42%)

Query: 11  DLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIP 70
           DLS + ++  +       + LE L L+ N +     +    LT L  L ++ N +     
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340

Query: 71  LEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTL 130
               NL+ L+VLDLS N IR     +F  L  LK L L  N+L          LT L  +
Sbjct: 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKI 400

Query: 131 NMRSNLINASLVNLTSLSLHYN 152
            + +N  + S   +  LS   N
Sbjct: 401 WLHTNPWDCSCPRIDYLSRWLN 422



 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 9/137 (6%)

Query: 103 LKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINA-------SLVNLTSLSLHYNNLT 155
           +K+ DLS++K+   + S   H T L  L +  N IN         L +L  L+L  N L 
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336

Query: 156 GPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGN-LK 214
                   +L+++ +LDLS N +      S   L  L  L + +NQ+  S+P  I + L 
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLT 395

Query: 215 RVEAVKLYDNKLDGPIP 231
            ++ + L+ N  D   P
Sbjct: 396 SLQKIWLHTNPWDCSCP 412



 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 131/339 (38%), Gaps = 62/339 (18%)

Query: 4   LRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPS--TLGHLTQLTTLAIA 61
           L +L+ L L  N            L+ LE L L+  +L G + S      LT L  L + 
Sbjct: 78  LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137

Query: 62  SNHINVSIPLEIG-NLNFLQVLDLSGNEIRGSIPSTFGHLK-------RLKSL---DLSQ 110
            N+I    P     N+    VLDL+ N+++        + +       RL S+   D+++
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197

Query: 111 NKLVGPIPSSLGHLTQLTTLNMRSNLINASLVN----------LTSL----------SLH 150
             L      +    T +TTL++  N    S+            + SL          S  
Sbjct: 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257

Query: 151 YNNLTGPIPSTLGHLNR--IRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSIPL 208
           + N   P   T   L    ++  DLS++K+   + S   H T L  L +  N+IN     
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN----- 312

Query: 209 EIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIGK-LQELYYL 267
                      K+ DN   G         + L++L L  N L GSI S + + L +L  L
Sbjct: 313 -----------KIDDNAFWG--------LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVL 352

Query: 268 DLSHNFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSV 306
           DLS+N I          +P++  + L  N L  S+P  +
Sbjct: 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGI 390


>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
           Discovered Through Site-Directed Dynamic Tethering
          Length = 272

 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 404 EDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQIRH 462
           EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +RH
Sbjct: 12  EDFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRH 71

Query: 463 RNIVKLYGFCLHRKCMFLI 481
            NI++LYG+      ++LI
Sbjct: 72  PNILRLYGYFHDATRVYLI 90


>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
           Its Activating Protein Tab1
 pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
          Length = 307

 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 6/79 (7%)

Query: 404 EDFHIKYCIGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           ++  ++  +G G +G V +A+    K VA+K++             F  + R LS++ H 
Sbjct: 8   KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIE-----SESERKAFIVELRQLSRVNHP 61

Query: 464 NIVKLYGFCLHRKCMFLIY 482
           NIVKLYG CL+  C+ + Y
Sbjct: 62  NIVKLYGACLNPVCLVMEY 80


>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
           Ligand Complex
 pdb|1V0O|B Chain B, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
           Ligand Complex
          Length = 288

 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 404 EDFHIKYCIGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           E +H    IG G YG VY+A+   G+  ALKK+              R +  +L +++H 
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIR-EISILKELKHS 60

Query: 464 NIVKLYGFCLHRKCMFLIY 482
           NIVKLY     +K + L++
Sbjct: 61  NIVKLYDVIHTKKRLVLVF 79


>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
           Lys240->arg, Met302- >leu) In Complex With
           1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
           Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
 pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
           (Asn186->gly, Lys240->arg, Met302->leu) In Complex With
           Compound 290.
 pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
           (Asn186->gly, Lys240->arg, Met302->leu) In Complex With
           Compound 823.
 pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
           (Asn186->gly, Lys240->arg, Met302->leu) In Complex With
           Compound 130.
 pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
           >arg, Met302->leu) In Complex With
           1-(3-Chloro-Phenyl)-3-
           {5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
           Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
 pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
           >arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
           Pyrazolo[4,
           3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
           (3-Trifluoromethyl-Phenyl)-Urea
 pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
           >arg, Met302->leu) In Complex With
           [7-(2-{2-[3-(3-Chloro-
           Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
           D]pyrimidin-1-Yl]-Acetic Acid
          Length = 272

 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 404 EDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQIRH 462
           EDF I   +G G +G+VY AR    K ++ALK L              R +  + S +RH
Sbjct: 12  EDFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRH 71

Query: 463 RNIVKLYGFCLHRKCMFLI 481
            NI++LYG+      ++LI
Sbjct: 72  PNILRLYGYFHDATRVYLI 90


>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5
 pdb|1OB3|B Chain B, Structure Of P. Falciparum Pfpk5
 pdb|1V0P|A Chain A, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
           Complex
 pdb|1V0P|B Chain B, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
           Complex
          Length = 288

 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 404 EDFHIKYCIGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           E +H    IG G YG VY+A+   G+  ALKK+              R +  +L +++H 
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIR-EISILKELKHS 60

Query: 464 NIVKLYGFCLHRKCMFLIY 482
           NIVKLY     +K + L++
Sbjct: 61  NIVKLYDVIHTKKRLVLVF 79


>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5
 pdb|1V0B|B Chain B, Crystal Structure Of The T198a Mutant Of Pfpk5
          Length = 288

 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 404 EDFHIKYCIGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           E +H    IG G YG VY+A+   G+  ALKK+              R +  +L +++H 
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIR-EISILKELKHS 60

Query: 464 NIVKLYGFCLHRKCMFLIY 482
           NIVKLY     +K + L++
Sbjct: 61  NIVKLYDVIHTKKRLVLVF 79


>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
 pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
          Length = 440

 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 31/174 (17%)

Query: 169 RILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIG---NLKRVEAVKLYDNK 225
           R+L+L EN++     +S  HL  L  L +  N I     +EIG    L  +  ++L+DN+
Sbjct: 67  RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT---IEIGAFNGLANLNTLELFDNR 123

Query: 226 LDGPIPPELMNCSKLMELELGNNLLRGSIPS------------EIGKLQELYYLD----- 268
           L        +  SKL EL L NN +  SIPS            ++G+L+ L Y+      
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 269 -------LSHNFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSVRKVPHLDVL 315
                  L+    N + +  L  +  +D +DLS N+LS   P S + + HL  L
Sbjct: 183 GLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236



 Score = 38.9 bits (89), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 93/220 (42%), Gaps = 24/220 (10%)

Query: 21  IPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNF-- 78
           +P  +   ++L NLH +   ++    ++  HL  L  L ++ NHI     +EIG  N   
Sbjct: 58  VPDGISTNTRLLNLHENQIQIIK--VNSFKHLRHLEILQLSRNHIRT---IEIGAFNGLA 112

Query: 79  -LQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKL-------VGPIPS----SLGHLTQ 126
            L  L+L  N +       F +L +LK L L  N +          IPS     LG L +
Sbjct: 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR 172

Query: 127 LTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSV 186
           L+ +   S      L NL  L+L   NL   IP+ L  L ++  LDLS N L    P S 
Sbjct: 173 LSYI---SEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSF 227

Query: 187 GHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDNKL 226
             L  L  L M  +QI         NL+ +  + L  N L
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267



 Score = 33.9 bits (76), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 88/220 (40%), Gaps = 28/220 (12%)

Query: 58  LAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPI 117
           L +  N I +       +L  L++L LS N IR      F  L  L +L+L  N+L    
Sbjct: 69  LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 128

Query: 118 PSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPS-TLGHLNRIRILDLSEN 176
             +  +L++L  L +R+N I +                  IPS     +  +R LDL E 
Sbjct: 129 NGAFVYLSKLKELWLRNNPIES------------------IPSYAFNRIPSLRRLDLGEL 170

Query: 177 KLVGPIPSSVGH-LTQLNTLNMYSNQINGSIPLEIGNLK---RVEAVKLYDNKLDGPIPP 232
           K +  I       L+ L  LN+    +      EI NL    +++ + L  N L    P 
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLR-----EIPNLTPLIKLDELDLSGNHLSAIRPG 225

Query: 233 ELMNCSKLMELELGNNLLRGSIPSEIGKLQELYYLDLSHN 272
                  L +L +  + ++    +    LQ L  ++L+HN
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265


>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
           Viral Oncogene Homologue (V-Fes) In Complex With
           Staurosporine And A Consensus Peptide
          Length = 377

 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 404 EDFHIKYCIGTGGYGSVYRARLPSG-KVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRH 462
           ED  +   IG G +G V+  RL +   +VA+K   C           F  +AR+L Q  H
Sbjct: 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKS--CRETLPPDLKAKFLQEARILKQYSH 171

Query: 463 RNIVKLYGFCLHRKCMFLI 481
            NIV+L G C  ++ ++++
Sbjct: 172 PNIVRLIGVCTQKQPIYIV 190


>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
           Homologue (V- Fes)
 pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
           Homologue (v- Fes) In Complex With Staurosporine And A
           Consensus Peptide
 pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
           Homologue (V- Fes)in Complex With Tae684
          Length = 377

 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 404 EDFHIKYCIGTGGYGSVYRARLPSG-KVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRH 462
           ED  +   IG G +G V+  RL +   +VA+K   C           F  +AR+L Q  H
Sbjct: 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKS--CRETLPPDLKAKFLQEARILKQYSH 171

Query: 463 RNIVKLYGFCLHRKCMFLI 481
            NIV+L G C  ++ ++++
Sbjct: 172 PNIVRLIGVCTQKQPIYIV 190


>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
           With Adp Bound
          Length = 311

 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 394 ITFQDIIEATEDFHIKYCIGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNK 453
           + FQ ++E  +       +G G YG VY+A+   G++VALK++              R  
Sbjct: 14  LYFQGLMEKYQKLEK---VGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREI 70

Query: 454 ARLLSQIRHRNIVKLYGFCLHRKCMFLIY 482
           + LL ++ H NIV L       +C+ L++
Sbjct: 71  S-LLKELHHPNIVSLIDVIHSERCLTLVF 98


>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
           With Indirubin 3'-Monoxime Bound
          Length = 313

 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 394 ITFQDIIEATEDFHIKYCIGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNK 453
           + FQ ++E  +       +G G YG VY+A+   G++VALK++              R +
Sbjct: 14  LYFQGLMEKYQKLEK---VGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIR-E 69

Query: 454 ARLLSQIRHRNIVKLYGFCLHRKCMFLIY 482
             LL ++ H NIV L       +C+ L++
Sbjct: 70  ISLLKELHHPNIVSLIDVIHSERCLTLVF 98


>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439
 pdb|2VRX|B Chain B, Structure Of Aurora B Kinase In Complex With Zm447439
          Length = 285

 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 404 EDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQIRH 462
           +DF I   +G G +G+VY AR    K ++ALK L              R +  + S +RH
Sbjct: 15  DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRH 74

Query: 463 RNIVKLYGFCLHRKCMFLI 481
            NI+++Y +   RK ++L+
Sbjct: 75  PNILRMYNYFHDRKRIYLM 93


>pdb|2BFX|A Chain A, Mechanism Of Aurora-B Activation By Incenp And Inhibition
           By Hesperidin.
 pdb|2BFX|B Chain B, Mechanism Of Aurora-B Activation By Incenp And Inhibition
           By Hesperidin.
 pdb|2VGP|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With A
           Aminothiazole Inhibitor
 pdb|2VGP|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With A
           Aminothiazole Inhibitor
 pdb|2VGO|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With
           Reversine Inhibitor
 pdb|2VGO|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With
           Reversine Inhibitor
 pdb|3ZTX|A Chain A, Aurora Kinase Selective Inhibitors Identified Using A
           Taxol- Induced Checkpoint Sensitivity Screen.
 pdb|3ZTX|B Chain B, Aurora Kinase Selective Inhibitors Identified Using A
           Taxol- Induced Checkpoint Sensitivity Screen
          Length = 284

 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 404 EDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQIRH 462
           +DF I   +G G +G+VY AR    K ++ALK L              R +  + S +RH
Sbjct: 14  DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRH 73

Query: 463 RNIVKLYGFCLHRKCMFLI 481
            NI+++Y +   RK ++L+
Sbjct: 74  PNILRMYNYFHDRKRIYLM 92


>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
           Of Netrin-G Ligand-3
 pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
           Of Netrin-G Ligand-3
          Length = 321

 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 87/205 (42%), Gaps = 18/205 (8%)

Query: 34  LHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLN---FLQVLDLSGNEIR 90
           L+L  NS+      T  HL  L  L ++ N +     +E+G  N    L  L+L  N + 
Sbjct: 40  LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVR---KIEVGAFNGLPSLNTLELFDNRLT 96

Query: 91  GSIPSTFGHLKRLKSLDLSQNKLVGPIPS-------SLGHLT--QLTTLNMRSNLINASL 141
                 F +L +L+ L L  N  +  IPS       SL  L   +L  L   S      L
Sbjct: 97  TVPTQAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL 155

Query: 142 VNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQ 201
           VNL  L+L   NL   IP+ L  L R+  L+LS N+L    P S   LT L  L +   Q
Sbjct: 156 VNLRYLNLGMCNLKD-IPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQ 213

Query: 202 INGSIPLEIGNLKRVEAVKLYDNKL 226
           +         +LK +E + L  N L
Sbjct: 214 VATIERNAFDDLKSLEELNLSHNNL 238



 Score = 41.6 bits (96), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 91/217 (41%), Gaps = 22/217 (10%)

Query: 58  LAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPI 117
           L +  N I V       +L  L++L LS N +R      F  L  L +L+L  N+L    
Sbjct: 40  LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99

Query: 118 PSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPS-TLGHLNRIRILDLSEN 176
             +  +L++L  L +R+N I +                  IPS     +  +R LDL E 
Sbjct: 100 TQAFEYLSKLRELWLRNNPIES------------------IPSYAFNRVPSLRRLDLGEL 141

Query: 177 KLVGPIPSSVGH-LTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDNKLDGPIPPELM 235
           K +  I  +    L  L  LN+    +   IP  +  L R+E ++L  N+LD   P    
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLGMCNLK-DIP-NLTALVRLEELELSGNRLDLIRPGSFQ 199

Query: 236 NCSKLMELELGNNLLRGSIPSEIGKLQELYYLDLSHN 272
             + L +L L +  +     +    L+ L  L+LSHN
Sbjct: 200 GLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236



 Score = 36.2 bits (82), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 7/177 (3%)

Query: 142 VNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQ 201
           VN   L+L  N++      T  HL  + IL LS+N +      +   L  LNTL ++ N+
Sbjct: 35  VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNR 94

Query: 202 INGSIPLEIGNLKRVEAVKLYDNKLDGPIPPELMN-CSKLMELELGNNLLRGSIPSEIG- 259
           +          L ++  + L +N ++  IP    N    L  L+LG  L R    SE   
Sbjct: 95  LTTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLG-ELKRLEYISEAAF 152

Query: 260 -KLQELYYLDLSHNFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSVRKVPHLDVL 315
             L  L YL+L     N K +  L A+  ++ ++LS N L    P S + +  L  L
Sbjct: 153 EGLVNLRYLNLG--MCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKL 207



 Score = 29.6 bits (65), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 38/89 (42%)

Query: 23  PTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVL 82
           P L  L +LE L LS N L    P +   LT L  L +    +         +L  L+ L
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231

Query: 83  DLSGNEIRGSIPSTFGHLKRLKSLDLSQN 111
           +LS N +       F  L RL+ + L+ N
Sbjct: 232 NLSHNNLMSLPHDLFTPLHRLERVHLNHN 260


>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin.
 pdb|2BFY|B Chain B, Complex Of Aurora-B With Incenp And Hesperidin
          Length = 284

 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 404 EDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKLHCXXXXXXXXXXXFRNKARLLSQIRH 462
           +DF I   +G G +G+VY AR    K ++ALK L              R +  + S +RH
Sbjct: 14  DDFDIVRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRH 73

Query: 463 RNIVKLYGFCLHRKCMFLI 481
            NI+++Y +   RK ++L+
Sbjct: 74  PNILRMYNYFHDRKRIYLM 92


>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine
          Length = 306

 Score = 41.2 bits (95), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 401 EATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQ 459
           E  E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL +
Sbjct: 7   EFMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKE 65

Query: 460 IRHRNIVKLYGFCLHRKCMFLIY 482
           + H NIVKL         ++L++
Sbjct: 66  LNHPNIVKLLDVIHTENKLYLVF 88


>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
          Length = 306

 Score = 41.2 bits (95), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKA--RLLS 458
           AT  +     IG G YG+VY+AR P SG  VALK +              R  A  R L 
Sbjct: 2   ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLE 61

Query: 459 QIRHRNIVKLYGFC 472
              H N+V+L   C
Sbjct: 62  AFEHPNVVRLMDVC 75


>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
 pdb|2W9Z|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
          Length = 306

 Score = 40.8 bits (94), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKA--RLLS 458
           AT  +     IG G YG+VY+AR P SG  VALK +              R  A  R L 
Sbjct: 2   ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLE 61

Query: 459 QIRHRNIVKLYGFC 472
              H N+V+L   C
Sbjct: 62  AFEHPNVVRLMDVC 75


>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of
           8-Anilino-1-Naphthalene Sulfonate
 pdb|3PXQ|A Chain A, Cdk2 In Complex With 3 Molecules Of
           8-Anilino-1-Naphthalene Sulfonate
 pdb|3PXR|A Chain A, Apo Cdk2 Crystallized From Jeffamine
 pdb|3PXY|A Chain A, Cdk2 In Complex With Inhibitor Jws648
 pdb|3PXZ|A Chain A, Cdk2 Ternary Complex With Jws648 And Ans
 pdb|3PY0|A Chain A, Cdk2 In Complex With Inhibitor Su9516
 pdb|3PY1|A Chain A, Cdk2 Ternary Complex With Su9516 And Ans
 pdb|3QL8|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-260
 pdb|3QQF|A Chain A, Cdk2 In Complex With Inhibitor L1
 pdb|3QQG|A Chain A, Cdk2 In Complex With Inhibitor L2-5
 pdb|3QQH|A Chain A, Cdk2 In Complex With Inhibitor L2-2
 pdb|3QQJ|A Chain A, Cdk2 In Complex With Inhibitor L2
 pdb|3QQL|A Chain A, Cdk2 In Complex With Inhibitor L3
 pdb|3QRT|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc2-55
 pdb|3QRU|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-12
 pdb|3QWJ|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-142
 pdb|3QWK|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-150
 pdb|3QX2|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-190
 pdb|3QX4|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-78
 pdb|3QXO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-84
 pdb|3QZF|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-52
 pdb|3QZG|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-76
 pdb|3QZH|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-124
 pdb|3QZI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-126
 pdb|3R1Q|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-102
 pdb|3R1S|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-127
 pdb|3R1Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-134
 pdb|3R28|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-140
 pdb|3R6X|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-158
 pdb|3R71|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-162
 pdb|3R73|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-164
 pdb|3R7E|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-67
 pdb|3R7I|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-74
 pdb|3R7U|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-75
 pdb|3R7V|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-9
 pdb|3R7Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-88
 pdb|3R83|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-92
 pdb|3R8L|A Chain A, Cdk2 In Complex With Inhibitor L3-4
 pdb|3R8M|A Chain A, Cdk2 In Complex With Inhibitor L3-3
 pdb|3R8P|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-6
 pdb|3RAI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-160
 pdb|3RM6|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-80
 pdb|3RM7|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-91
 pdb|3ROY|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-154
 pdb|3RPO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-156
 pdb|4EZ3|A Chain A, Cdk2 In Complex With Nsc 134199
 pdb|4EZ7|A Chain A, Cdk2 In Complex With Staurosporine And 2 Molecules Of
           8-Anilino-1- Naphthalene Sulfonic Acid
 pdb|3QQK|A Chain A, Cdk2 In Complex With Inhibitor L4
 pdb|3QTQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-137
 pdb|3QTR|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-148
 pdb|3QTS|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-12
 pdb|3QTU|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-132
 pdb|3QTW|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-13
 pdb|3QTX|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-35
 pdb|3QTZ|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-36
 pdb|3QU0|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-38
 pdb|3QXP|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
 pdb|3R8U|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-132
 pdb|3R8V|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-135
 pdb|3R8Z|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-136
 pdb|3R9D|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-135
 pdb|3R9H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-142
 pdb|3R9N|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-21
 pdb|3R9O|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-143
 pdb|3RAH|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-22
 pdb|3RAK|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-32
 pdb|3RAL|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-34
 pdb|3RJC|A Chain A, Cdk2 In Complex With Inhibitor L4-12
 pdb|3RK5|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-72
 pdb|3RK7|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-71
 pdb|3RK9|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-74
 pdb|3RKB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-73
 pdb|3RMF|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-33
 pdb|3RNI|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-86
 pdb|3RPR|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-49
 pdb|3RPV|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-88
 pdb|3RPY|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-40
 pdb|3RZB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-23
 pdb|3S00|A Chain A, Cdk2 In Complex With Inhibitor L4-14
 pdb|3S0O|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-138
 pdb|3S1H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-39
 pdb|3SQQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-96
 pdb|4GCJ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
          Length = 306

 Score = 40.8 bits (94), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 401 EATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQ 459
           E  E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL +
Sbjct: 7   EFMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKE 65

Query: 460 IRHRNIVKLYGFCLHRKCMFLIY 482
           + H NIVKL         ++L++
Sbjct: 66  LNHPNIVKLLDVIHTENKLYLVF 88


>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
          Length = 306

 Score = 40.8 bits (94), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKA--RLLS 458
           AT  +     IG G YG+VY+AR P SG  VALK +              R  A  R L 
Sbjct: 2   ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLE 61

Query: 459 QIRHRNIVKLYGFC 472
              H N+V+L   C
Sbjct: 62  AFEHPNVVRLMDVC 75


>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
           And Immunoglobulin Domain Of Netrin-G Ligand-3
          Length = 411

 Score = 40.8 bits (94), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 91/217 (41%), Gaps = 22/217 (10%)

Query: 58  LAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPI 117
           L +  N I V       +L  L++L LS N +R      F  L  L +L+L  N+L    
Sbjct: 40  LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99

Query: 118 PSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPS-TLGHLNRIRILDLSEN 176
             +  +L++L  L +R+N I +                  IPS     +  +R LDL E 
Sbjct: 100 TQAFEYLSKLRELWLRNNPIES------------------IPSYAFNRVPSLRRLDLGEL 141

Query: 177 KLVGPIPSSVGH-LTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDNKLDGPIPPELM 235
           K +  I  +    L  L  LN+    +   IP  +  L R+E ++L  N+LD   P    
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLGMCNLK-DIP-NLTALVRLEELELSGNRLDLIRPGSFQ 199

Query: 236 NCSKLMELELGNNLLRGSIPSEIGKLQELYYLDLSHN 272
             + L +L L +  +     +    L+ L  L+LSHN
Sbjct: 200 GLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236



 Score = 40.4 bits (93), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 87/205 (42%), Gaps = 18/205 (8%)

Query: 34  LHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLN---FLQVLDLSGNEIR 90
           L+L  NS+      T  HL  L  L ++ N +     +E+G  N    L  L+L  N + 
Sbjct: 40  LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVR---KIEVGAFNGLPSLNTLELFDNRLT 96

Query: 91  GSIPSTFGHLKRLKSLDLSQNKLVGPIPS-------SLGHLT--QLTTLNMRSNLINASL 141
                 F +L +L+ L L  N  +  IPS       SL  L   +L  L   S      L
Sbjct: 97  TVPTQAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL 155

Query: 142 VNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQ 201
           VNL  L+L   NL   IP+ L  L R+  L+LS N+L    P S   LT L  L +   Q
Sbjct: 156 VNLRYLNLGMCNLKD-IPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQ 213

Query: 202 INGSIPLEIGNLKRVEAVKLYDNKL 226
           +         +LK +E + L  N L
Sbjct: 214 VATIERNAFDDLKSLEELNLSHNNL 238



 Score = 35.8 bits (81), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 7/177 (3%)

Query: 142 VNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQ 201
           VN   L+L  N++      T  HL  + IL LS+N +      +   L  LNTL ++ N+
Sbjct: 35  VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNR 94

Query: 202 INGSIPLEIGNLKRVEAVKLYDNKLDGPIPPELMN-CSKLMELELGNNLLRGSIPSEIG- 259
           +          L ++  + L +N ++  IP    N    L  L+LG  L R    SE   
Sbjct: 95  LTTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLG-ELKRLEYISEAAF 152

Query: 260 -KLQELYYLDLSHNFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSVRKVPHLDVL 315
             L  L YL+L     N K +  L A+  ++ ++LS N L    P S + +  L  L
Sbjct: 153 EGLVNLRYLNLG--MCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKL 207



 Score = 28.9 bits (63), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 38/89 (42%)

Query: 23  PTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVL 82
           P L  L +LE L LS N L    P +   LT L  L +    +         +L  L+ L
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231

Query: 83  DLSGNEIRGSIPSTFGHLKRLKSLDLSQN 111
           +LS N +       F  L RL+ + L+ N
Sbjct: 232 NLSHNNLMSLPHDLFTPLHRLERVHLNHN 260


>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
 pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
           Bound Tcs 2312
 pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
           Bound Tcs 2312
          Length = 331

 Score = 40.8 bits (94), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 412 IGTGGYGSVYRAR-LPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYG 470
           +G G YG V + R   +G++VA+KK               R + +LL Q+RH N+V L  
Sbjct: 33  VGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMR-EIKLLKQLRHENLVNLLE 91

Query: 471 FCLHRKCMFLIY 482
            C  +K  +L++
Sbjct: 92  VCKKKKRWYLVF 103


>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680
          Length = 292

 Score = 40.8 bits (94), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 404 EDFHIKYCIGTGGYGSVYRAR-LPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRH 462
           +DF I   +G G +G+VY AR   S  +VALK L              R +  + + + H
Sbjct: 23  DDFEIGRPLGKGKFGNVYLAREKKSHFIVALKVLFKSQIEKEGVEHQLRREIEIQAHLHH 82

Query: 463 RNIVKLYGFCLHRKCMFLI 481
            NI++LY +   R+ ++LI
Sbjct: 83  PNILRLYNYFYDRRRIYLI 101


>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
 pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
 pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
          Length = 329

 Score = 40.4 bits (93), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 16/210 (7%)

Query: 4   LRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASN 63
           L+NL  L L +N +    P     L KLE L+LS N L   +P  +    Q   L +  N
Sbjct: 75  LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMPKTLQ--ELRVHEN 131

Query: 64  HINVSIPLEIGNLNFLQVLDLSGNEIRGS--IPSTFGHLKRLKSLDLSQNKLVGPIPSSL 121
            I          LN + V++L  N ++ S      F  +K+L  + ++   +   IP  L
Sbjct: 132 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL 190

Query: 122 GHLTQLTTLNMRSNLIN-------ASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLS 174
                LT L++  N I          L NL  L L +N+++     +L +   +R L L+
Sbjct: 191 P--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248

Query: 175 ENKLVGPIPSSVGHLTQLNTLNMYSNQING 204
            NKLV  +P  +     +  + +++N I+ 
Sbjct: 249 NNKLVK-VPGGLADHKYIQVVYLHNNNISA 277



 Score = 33.9 bits (76), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 4/102 (3%)

Query: 81  VLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSN----L 136
           +LDL  N+I       F +LK L +L L  NK+    P +   L +L  L +  N    L
Sbjct: 56  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115

Query: 137 INASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKL 178
                  L  L +H N +T    S    LN++ +++L  N L
Sbjct: 116 PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157


>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
           The Archetypal Small Leucine-Rich Repeat Proteoglycan
          Length = 330

 Score = 40.4 bits (93), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 16/210 (7%)

Query: 4   LRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASN 63
           L+NL  L L +N +    P     L KLE L+LS N L   +P  +    Q   L +  N
Sbjct: 75  LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMPKTLQ--ELRVHEN 131

Query: 64  HINVSIPLEIGNLNFLQVLDLSGNEIRGS--IPSTFGHLKRLKSLDLSQNKLVGPIPSSL 121
            I          LN + V++L  N ++ S      F  +K+L  + ++   +   IP  L
Sbjct: 132 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL 190

Query: 122 GHLTQLTTLNMRSNLIN-------ASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLS 174
                LT L++  N I          L NL  L L +N+++     +L +   +R L L+
Sbjct: 191 P--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248

Query: 175 ENKLVGPIPSSVGHLTQLNTLNMYSNQING 204
            NKLV  +P  +     +  + +++N I+ 
Sbjct: 249 NNKLVK-VPGGLADHKYIQVVYLHNNNISA 277



 Score = 33.5 bits (75), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 4/102 (3%)

Query: 81  VLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSN----L 136
           +LDL  N+I       F +LK L +L L  NK+    P +   L +L  L +  N    L
Sbjct: 56  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115

Query: 137 INASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKL 178
                  L  L +H N +T    S    LN++ +++L  N L
Sbjct: 116 PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157


>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
           Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine
 pdb|2R3Q|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
           Inhibitor
 pdb|2R3M|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
           Inhibitor
 pdb|2R3I|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
           Inhibitor
 pdb|2R3N|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
           Inhibitor
 pdb|2R3O|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
           Inhibitor
 pdb|2R3P|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
           Inhibitor
 pdb|2R3K|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
           Inhibitor
 pdb|2R3J|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
           Inhibitor
 pdb|2R3L|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
           Inhibitor
 pdb|1W8C|A Chain A, Co-crystal Structure Of
           6-cyclohexylmethoxy-8-isopropyl-9h- Purin-2-ylamine And
           Monomeric Cdk2
          Length = 299

 Score = 40.0 bits (92), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 404 EDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRH 462
           E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++ H
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKELNH 61

Query: 463 RNIVKLYGFCLHRKCMFLIY 482
            NIVKL         ++L++
Sbjct: 62  PNIVKLLDVIHTENKLYLVF 81


>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
           H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
 pdb|2IW8|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
           H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
          Length = 302

 Score = 40.0 bits (92), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           + E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKEL 62

Query: 461 RHRNIVKLYGFCLHRKCMFLIY 482
            H NIVKL         ++L++
Sbjct: 63  NHPNIVKLLDVIHTENKLYLVF 84


>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
           Cyclin A3 Complex With Atp
 pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
           Cyclin A3 Complex With Atp
          Length = 302

 Score = 40.0 bits (92), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           + E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKEL 62

Query: 461 RHRNIVKLYGFCLHRKCMFLIY 482
            H NIVKL         ++L++
Sbjct: 63  NHPNIVKLLDVIHTENKLYLVF 84


>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
           Cyclin A3 Complex With The Inhibitor Nu6102
 pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
           Cyclin A3 Complex With The Inhibitor Nu6102
 pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
           Cyclin A3 Complex With The Inhibitor Ro3306
 pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
           Cyclin A3 Complex With The Inhibitor Ro3306
          Length = 300

 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           + E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++
Sbjct: 3   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKEL 61

Query: 461 RHRNIVKLYGFCLHRKCMFLIY 482
            H NIVKL         ++L++
Sbjct: 62  NHPNIVKLLDVIHTENKLYLVF 83


>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
           With A Bisanilinopyrimidine Inhibitor
 pdb|2IW6|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
           With A Bisanilinopyrimidine Inhibitor
 pdb|2IW9|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
           With A Bisanilinopyrimidine Inhibitor
 pdb|2IW9|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
           With A Bisanilinopyrimidine Inhibitor
          Length = 302

 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           + E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKEL 62

Query: 461 RHRNIVKLYGFCLHRKCMFLIY 482
            H NIVKL         ++L++
Sbjct: 63  NHPNIVKLLDVIHTENKLYLVF 84


>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
           Cyclin A3 Complex With Atp
 pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
           Cyclin A3 Complex With Atp
          Length = 301

 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           + E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKEL 62

Query: 461 RHRNIVKLYGFCLHRKCMFLIY 482
            H NIVKL         ++L++
Sbjct: 63  NHPNIVKLLDVIHTENKLYLVF 84


>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
           Cyclin A3 Complex With The Inhibitor Ro3306
 pdb|4EON|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
           Cyclin A3 Complex With The Inhibitor Ro3306
          Length = 300

 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           + E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++
Sbjct: 2   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKEL 60

Query: 461 RHRNIVKLYGFCLHRKCMFLIY 482
            H NIVKL         ++L++
Sbjct: 61  NHPNIVKLLDVIHTENKLYLVF 82


>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
           With Atp
 pdb|4EOQ|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
           With Atp
          Length = 301

 Score = 39.7 bits (91), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           + E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKEL 62

Query: 461 RHRNIVKLYGFCLHRKCMFLIY 482
            H NIVKL         ++L++
Sbjct: 63  NHPNIVKLLDVIHTENKLYLVF 84


>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
           Complex With The Inhibitor Ro3306
 pdb|4EOI|C Chain C, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
           Complex With The Inhibitor Ro3306
          Length = 299

 Score = 39.7 bits (91), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           + E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKEL 59

Query: 461 RHRNIVKLYGFCLHRKCMFLIY 482
            H NIVKL         ++L++
Sbjct: 60  NHPNIVKLLDVIHTENKLYLVF 81


>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
           2-amino-4- Heteroaryl-pyrimidine Inhibitor
 pdb|4BCQ|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
           2-amino-4- Heteroaryl-pyrimidine Inhibitor
          Length = 301

 Score = 39.7 bits (91), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           + E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++
Sbjct: 3   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKEL 61

Query: 461 RHRNIVKLYGFCLHRKCMFLIY 482
            H NIVKL         ++L++
Sbjct: 62  NHPNIVKLLDVIHTENKLYLVF 83


>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137
 pdb|1VYW|C Chain C, Structure Of Cdk2CYCLIN A WITH PNU-292137
 pdb|2C4G|A Chain A, Structure Of Cdk2-Cyclin A With Pha-533514
 pdb|2C4G|C Chain C, Structure Of Cdk2-Cyclin A With Pha-533514
 pdb|2BPM|A Chain A, Structure Of Cdk2-Cyclin A With Pha-630529
 pdb|2BPM|C Chain C, Structure Of Cdk2-Cyclin A With Pha-630529
 pdb|2BKZ|A Chain A, Structure Of Cdk2-Cyclin A With Pha-404611
 pdb|2BKZ|C Chain C, Structure Of Cdk2-Cyclin A With Pha-404611
 pdb|2WIH|A Chain A, Structure Of Cdk2-Cyclin A With Pha-848125
 pdb|2WIH|C Chain C, Structure Of Cdk2-Cyclin A With Pha-848125
 pdb|2WIP|A Chain A, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
           Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
           Carboxylic Acid
 pdb|2WIP|C Chain C, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
           Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
           Carboxylic Acid
 pdb|2WPA|A Chain A, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
           Identification Of Pha-793887, A Potent Cdk Inhibitor
           Suitable For Intravenous Dosing
 pdb|2WPA|C Chain C, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
           Identification Of Pha-793887, A Potent Cdk Inhibitor
           Suitable For Intravenous Dosing
 pdb|2WXV|A Chain A, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
           Quinazoline-3-Carboxamide Inhibitor
 pdb|2WXV|C Chain C, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
           Quinazoline-3-Carboxamide Inhibitor
          Length = 309

 Score = 39.7 bits (91), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 404 EDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRH 462
           E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++ H
Sbjct: 7   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKELNH 65

Query: 463 RNIVKLYGFCLHRKCMFLIY 482
            NIVKL         ++L++
Sbjct: 66  PNIVKLLDVIHTENKLYLVF 85


>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
           With A
           2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
           aminopyrimidine Inhibitor
 pdb|1OGU|C Chain C, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
           With A
           2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
           aminopyrimidine Inhibitor
 pdb|1OI9|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
           With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
 pdb|1OI9|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
           With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
 pdb|1OIU|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
           With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
 pdb|1OIU|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
           With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
 pdb|1OIY|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
           With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
 pdb|1OIY|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
           With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
          Length = 302

 Score = 39.7 bits (91), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           + E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKEL 62

Query: 461 RHRNIVKLYGFCLHRKCMFLIY 482
            H NIVKL         ++L++
Sbjct: 63  NHPNIVKLLDVIHTENKLYLVF 84


>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
           With The Inhibitor Nu2058
 pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
           With The Inhibitor Nu2058
 pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
           With The Inhibitor Nu6094
 pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
           With The Inhibitor Nu6094
 pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
           With The Inhibitor Nu6086
 pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
           With The Inhibitor Nu6086
 pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
           With The Inhibitor Nu6102
 pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
           With The Inhibitor Nu6102
 pdb|1H24|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
           Peptide From E2f
 pdb|1H24|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
           Peptide From E2f
 pdb|1H25|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
           Peptide From Retinoblastoma-Associated Protein
 pdb|1H25|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
           Peptide From Retinoblastoma-Associated Protein
 pdb|1H26|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
           Peptide From P53
 pdb|1H26|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
           Peptide From P53
 pdb|1H27|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
           Peptide From P27
 pdb|1H27|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
           Peptide From P27
 pdb|1H28|A Chain A, Cdk2/cyclin A In Complex With An 11-residue Recruitment
           Peptide From P107
 pdb|1H28|C Chain C, Cdk2/cyclin A In Complex With An 11-residue Recruitment
           Peptide From P107
 pdb|2WMA|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
           Of Peptide Ligands For The Recruitment Site Of Cyclin A
 pdb|2WMA|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
           Of Peptide Ligands For The Recruitment Site Of Cyclin A
 pdb|2WMB|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
           Of Peptide Ligands For The Recruitment Site Of Cyclin A
 pdb|2WMB|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
           Of Peptide Ligands For The Recruitment Site Of Cyclin A
          Length = 303

 Score = 39.7 bits (91), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           + E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++
Sbjct: 5   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKEL 63

Query: 461 RHRNIVKLYGFCLHRKCMFLIY 482
            H NIVKL         ++L++
Sbjct: 64  NHPNIVKLLDVIHTENKLYLVF 85


>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
           The Inhibitor Indirubin-5-Sulphonate Bound
 pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
           The Inhibitor Indirubin-5-Sulphonate Bound
 pdb|1PKD|A Chain A, The Crystal Structure Of Ucn-01 In Complex With Phospho-
           Cdk2CYCLIN A
 pdb|1PKD|C Chain C, The Crystal Structure Of Ucn-01 In Complex With Phospho-
           Cdk2CYCLIN A
          Length = 297

 Score = 39.7 bits (91), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           + E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKEL 59

Query: 461 RHRNIVKLYGFCLHRKCMFLIY 482
            H NIVKL         ++L++
Sbjct: 60  NHPNIVKLLDVIHTENKLYLVF 81


>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site
 pdb|3EZV|A Chain A, Cdk-2 With Indazole Inhibitor 9 Bound At Its Active Site
          Length = 300

 Score = 39.7 bits (91), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           + E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++
Sbjct: 2   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKEL 60

Query: 461 RHRNIVKLYGFCLHRKCMFLIY 482
            H NIVKL         ++L++
Sbjct: 61  NHPNIVKLLDVIHTENKLYLVF 82


>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
           Complex With The Inhibitor Ro3306
 pdb|4EOP|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
           Complex With The Inhibitor Ro3306
          Length = 300

 Score = 39.7 bits (91), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           + E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++
Sbjct: 3   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKEL 61

Query: 461 RHRNIVKLYGFCLHRKCMFLIY 482
            H NIVKL         ++L++
Sbjct: 62  NHPNIVKLLDVIHTENKLYLVF 83


>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
           With The Inhibitor Ro3306
 pdb|4EOS|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
           With The Inhibitor Ro3306
          Length = 300

 Score = 39.7 bits (91), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           + E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++
Sbjct: 3   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKEL 61

Query: 461 RHRNIVKLYGFCLHRKCMFLIY 482
            H NIVKL         ++L++
Sbjct: 62  NHPNIVKLLDVIHTENKLYLVF 83


>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
           WITH THE Inhibitor Meriolin 3
 pdb|3BHT|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
           WITH THE Inhibitor Meriolin 3
 pdb|3BHU|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
           WITH THE Inhibitor Meriolin 5
 pdb|3BHU|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
           WITH THE Inhibitor Meriolin 5
 pdb|3BHV|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
           With The Inhibitor Variolin B
 pdb|3BHV|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
           With The Inhibitor Variolin B
 pdb|3MY5|A Chain A, Cdk2CYCLINA IN COMPLEX WITH DRB
 pdb|3MY5|C Chain C, Cdk2CYCLINA IN COMPLEX WITH DRB
 pdb|3TNW|A Chain A, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
 pdb|3TNW|C Chain C, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
 pdb|4BCO|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
           2-amino-4- Heteroaryl-pyrimidine Inhibitor
 pdb|4BCO|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
           2-amino-4- Heteroaryl-pyrimidine Inhibitor
          Length = 300

 Score = 39.7 bits (91), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           + E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++
Sbjct: 2   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKEL 60

Query: 461 RHRNIVKLYGFCLHRKCMFLIY 482
            H NIVKL         ++L++
Sbjct: 61  NHPNIVKLLDVIHTENKLYLVF 82


>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
           Complex With Atp
 pdb|4EOO|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
           Complex With Atp
          Length = 299

 Score = 39.7 bits (91), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           + E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++
Sbjct: 2   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKEL 60

Query: 461 RHRNIVKLYGFCLHRKCMFLIY 482
            H NIVKL         ++L++
Sbjct: 61  NHPNIVKLLDVIHTENKLYLVF 82


>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
 pdb|1QMZ|C Chain C, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
 pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
           SUBSTRATE
 pdb|1GY3|C Chain C, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
           SUBSTRATE
 pdb|1P5E|A Chain A, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
           Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
 pdb|1P5E|C Chain C, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
           Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
 pdb|2CCH|A Chain A, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
           Substrate Peptide Derived From Cdc Modified With A
           Gamma- Linked Atp Analogue
 pdb|2CCH|C Chain C, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
           Substrate Peptide Derived From Cdc Modified With A
           Gamma- Linked Atp Analogue
 pdb|2CCI|A Chain A, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
           A Peptide Containing Both The Substrate And Recruitment
           Sites Of Cdc6
 pdb|2CCI|C Chain C, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
           A Peptide Containing Both The Substrate And Recruitment
           Sites Of Cdc6
 pdb|2G9X|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
           COMPLEX WITH THE Inhibitor Nu6271
 pdb|2G9X|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
           COMPLEX WITH THE Inhibitor Nu6271
 pdb|3DDP|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
           With The Inhibitor Cr8
 pdb|3DDP|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
           With The Inhibitor Cr8
 pdb|3DDQ|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
           With The Inhibitor Roscovitine
 pdb|3DDQ|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
           With The Inhibitor Roscovitine
 pdb|3DOG|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
           Complex With The Inhibitor N-&-N1
 pdb|3DOG|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
           Complex With The Inhibitor N-&-N1
          Length = 299

 Score = 39.7 bits (91), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           + E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKEL 59

Query: 461 RHRNIVKLYGFCLHRKCMFLIY 482
            H NIVKL         ++L++
Sbjct: 60  NHPNIVKLLDVIHTENKLYLVF 81


>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
          Length = 289

 Score = 39.7 bits (91), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           + E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKEL 59

Query: 461 RHRNIVKLYGFCLHRKCMFLIY 482
            H NIVKL         ++L++
Sbjct: 60  NHPNIVKLLDVIHTENKLYLVF 81


>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E
 pdb|4EOR|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
           With The Inhibitor Nu6102
 pdb|4EOR|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
           With The Inhibitor Nu6102
          Length = 298

 Score = 39.7 bits (91), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQI 460
           + E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKEL 59

Query: 461 RHRNIVKLYGFCLHRKCMFLIY 482
            H NIVKL         ++L++
Sbjct: 60  NHPNIVKLLDVIHTENKLYLVF 81


>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
           Inhibitor
 pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
           Inhibitor
 pdb|2DS1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
           Inhibitor
          Length = 298

 Score = 39.7 bits (91), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 404 EDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRH 462
           E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++ H
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKELNH 60

Query: 463 RNIVKLYGFCLHRKCMFLIY 482
            NIVKL         ++L++
Sbjct: 61  PNIVKLLDVIHTENKLYLVF 80


>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of
           Cyclin-dependent Kinase Inhibitors Identified Through
           Structure-based Hybridisation
          Length = 299

 Score = 39.7 bits (91), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 404 EDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRH 462
           E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++ H
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKELNH 61

Query: 463 RNIVKLYGFCLHRKCMFLIY 482
            NIVKL         ++L++
Sbjct: 62  PNIVKLLDVIHTENKLYLVF 81


>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
           IONS
 pdb|4I3Z|C Chain C, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
           IONS
          Length = 296

 Score = 39.7 bits (91), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 404 EDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRH 462
           E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++ H
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKELNH 60

Query: 463 RNIVKLYGFCLHRKCMFLIY 482
            NIVKL         ++L++
Sbjct: 61  PNIVKLLDVIHTENKLYLVF 80


>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide,
           Compound (S)-8b
 pdb|3IG7|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
           Efp With Cdk-2
 pdb|3IGG|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
           Efq With Cdk-2
 pdb|1B38|A Chain A, Human Cyclin-Dependent Kinase 2
 pdb|1B39|A Chain A, Human Cyclin-Dependent Kinase 2 Phosphorylated On Thr 160
 pdb|1E1V|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
           Inhibitor Nu2058
 pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
           Inhibitor Nu6027
 pdb|1H00|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
           Pyrimidine Cdk4 Inhibitor
 pdb|1H07|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
           Pyrimidine Cdk4 Inhibitor
 pdb|1H08|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
           Pyrimidine Cdk4 Inhibitor
 pdb|2R3R|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
           Inhibitor
 pdb|4ACM|A Chain A, Cdk2 In Complex With
           3-Amino-6-(4-{[2-(Dimethylamino)ethyl]
           Sulfamoyl}-Phenyl)-N-Pyridin-3-Ylpyrazine-2-Carboxamide
 pdb|3SW4|A Chain A, Crystal Structure Of The Cdk2 In Complex With
           Thiazolylpyrimidine Inhibitor
 pdb|3SW7|A Chain A, Crystal Structure Of The Cdk2 In Complex With
           Thiazolylpyrimidine Inhibitor
 pdb|1OIQ|A Chain A, Imidazopyridines: A Potent And Selective Class Of
           Cyclin-Dependent Kinase Inhibitors Identified Through
           Structure-Based Hybridisation
 pdb|1V1K|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
           Pyrimidine Cdk4 Inhibitor
 pdb|1URW|A Chain A, Cdk2 In Complex With An Imidazo[1,2-B]pyridazine
 pdb|2VV9|A Chain A, Cdk2 In Complex With An Imidazole Piperazine
 pdb|2W06|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
           Pyrimidine, Compound 5c
 pdb|2R3G|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
           Inhibitor
 pdb|2R3H|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
           Inhibitor
 pdb|2R3F|A Chain A, Crystal Structure Of Cyclin-dependent Kinase 2 With
           Inhibitor
          Length = 299

 Score = 39.7 bits (91), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 404 EDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRH 462
           E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++ H
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKELNH 61

Query: 463 RNIVKLYGFCLHRKCMFLIY 482
            NIVKL         ++L++
Sbjct: 62  PNIVKLLDVIHTENKLYLVF 81


>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex
 pdb|1FIN|C Chain C, Cyclin A-Cyclin-Dependent Kinase 2 Complex
 pdb|1CKP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
           Inhibitor Purvalanol B
 pdb|1BUH|A Chain A, Crystal Structure Of The Human Cdk2 Kinase Complex With
           Cell Cycle-Regulatory Protein Ckshs1
 pdb|1DM2|A Chain A, Human Cyclin-Dependent Kinase 2 Complexed With The
           Inhibitor Hymenialdisine
 pdb|1DI8|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
           Complex With
           4-[3-Hydroxyanilino]-6,7-Dimethoxyquinazoline
 pdb|1F5Q|A Chain A, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
           Complexed To Human Cyclin Dependent Kinase 2
 pdb|1F5Q|C Chain C, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
           Complexed To Human Cyclin Dependent Kinase 2
 pdb|1FVT|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
           Complex With An Oxindole Inhibitor
 pdb|1FVV|A Chain A, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
           Inhibitor
 pdb|1FVV|C Chain C, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
           Inhibitor
 pdb|1JSV|A Chain A, The Structure Of Cyclin-dependent Kinase 2 (cdk2) In
           Complex With 4-[(6-amino-4-pyrimidinyl)
           Amino]benzenesulfonamide
 pdb|1G5S|A Chain A, Crystal Structure Of Human Cyclin Dependent Kinase 2
           (Cdk2) In Complex With The Inhibitor H717
 pdb|1JVP|P Chain P, Crystal Structure Of Human Cdk2 (Unphosphorylated) In
           Complex With Pkf049-365
 pdb|1GIH|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
           Inhibitor
 pdb|1KE5|A Chain A, Cdk2 Complexed With N-methyl-4-{[(2-oxo-1,2-dihydro-3h-
           Indol-3-ylidene)methyl]amino}benzenesulfonamide
 pdb|1KE6|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
           N-Methyl-{4-
           [2-(7-Oxo-6,7-Dihydro-8h-[1,3]thiazolo[5,4-E]indol-8-
           Ylidene)hydrazino]phenyl}methanesulfonamide
 pdb|1KE7|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[(2,2-
           Dioxido-1,
           3-Dihydro-2-Benzothien-5-Yl)amino]methylene}-5-
           (1,3-Oxazol-5-Yl)-1,3-Dihydro-2h-Indol-2-One
 pdb|1KE8|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
           4-{[(2-Oxo-
           1,2-Dihydro-3h-Indol-3-Ylidene)methyl]amino}-N-(1,3-
           Thiazol-2-Yl)benzenesulfonamide
 pdb|1KE9|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-
           ({[amino(Imino)methyl]aminosulfonyl)anilino]methylene}-
           2- Oxo-2,3-Dihydro-1h-Indole
 pdb|1H0V|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
           The Inhibitor
           2-Amino-6-[(R)-Pyrrolidino-5'-Yl]methoxypurine
 pdb|1H0W|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
           The Inhibitor 2-Amino-6-[cyclohex-3-Enyl]methoxypurine
 pdb|1P2A|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
           Trisubstituted Naphthostyril Inhibitor
 pdb|1OKV|A Chain A, Cyclin A Binding Groove Inhibitor
           H-Arg-Arg-Leu-Ile-Phe-Nh2
 pdb|1OKV|C Chain C, Cyclin A Binding Groove Inhibitor
           H-Arg-Arg-Leu-Ile-Phe-Nh2
 pdb|1OKW|A Chain A, Cyclin A Binding Groove Inhibitor
           Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
 pdb|1OKW|C Chain C, Cyclin A Binding Groove Inhibitor
           Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
 pdb|1OL1|A Chain A, Cyclin A Binding Groove Inhibitor
           H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
 pdb|1OL1|C Chain C, Cyclin A Binding Groove Inhibitor
           H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
 pdb|1OL2|A Chain A, Cyclin A Binding Groove Inhibitor
           H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
 pdb|1OL2|C Chain C, Cyclin A Binding Groove Inhibitor
           H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
 pdb|1PW2|A Chain A, Apo Structure Of Human Cyclin-Dependent Kinase 2
 pdb|1PXI|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
           Inhibitor 4-(2,5-dichloro-thiophen-3-yl)-pyrimidin-2-
           Ylamine
 pdb|1PXJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
           Inhibitor
           4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Ylamine
 pdb|1PXK|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
           Inhibitor
           N-[4-(2,4-dimethyl-thiazol-5-yl)pyrimidin-2-yl]-
           N'-hydroxyiminoformamide
 pdb|1PXL|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
           Inhibitor
           [4-(2,4-dimethyl-thiazol-5-yl)-pyrimidin-2-yl]-
           (4-trifluoromethyl-phenyl)-amine
 pdb|1R78|A Chain A, Cdk2 Complex With A 4-alkynyl Oxindole Inhibitor
 pdb|1PXM|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
           Inhibitor 3-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-
           Ylamino]-Phenol
 pdb|1PXN|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
           Inhibitor 4-[4-(4-Methyl-2-Methylamino-Thiazol-5-Yl)-
           Pyrimidin-2-Ylamino]-Phenol
 pdb|1PXO|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
           Inhibitor
           [4-(2-Amino-4-Methyl-Thiazol-5-Yl)-Pyrimidin-2-
           Yl]-(3-Nitro-Phenyl)-Amine
 pdb|1PXP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
           Inhibitor
           N-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Yl]-
           N',N'-Dimethyl-Benzene-1,4-Diamine
 pdb|1VYZ|A Chain A, Structure Of Cdk2 Complexed With Pnu-181227
 pdb|1PYE|A Chain A, Crystal Structure Of Cdk2 With Inhibitor
 pdb|1URC|A Chain A, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
 pdb|1URC|C Chain C, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
 pdb|1W0X|C Chain C, Crystals Structure Of Human Cdk2 In Complex With The
           Inhibitor Olomoucine.
 pdb|1WCC|A Chain A, Screening For Fragment Binding By X-Ray Crystallography
 pdb|1Y8Y|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
           Pyrazolo[1, 5-A]pyrimidine Inhibitor
 pdb|1Y91|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
           Pyrazolo[1, 5-A]pyrimidine Inhibitor
 pdb|2BHE|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
           The Inhibitor 5-Bromo-Indirubine
 pdb|2BHH|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
           The Inhibitor 4-Hydroxypiperindinesulfonyl-Indirubine
 pdb|2B52|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Dph-
           042562
 pdb|2B53|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Din-
           234325
 pdb|2B54|A Chain A, Human Cyclin Dependent Kinase 2 (Ckd2)complexed With Din-
           232305
 pdb|2B55|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With
           Indenopyraxole Din-101312
 pdb|2BTR|A Chain A, Structure Of Cdk2 Complexed With Pnu-198873
 pdb|2BTS|A Chain A, Structure Of Cdk2 Complexed With Pnu-230032
 pdb|2C68|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
           Triazolopyrimidine Inhibitor
 pdb|2C69|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
           Triazolopyrimidine Inhibitor
 pdb|2C6I|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
           Triazolopyrimidine Inhibitor
 pdb|2C6K|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
           Triazolopyrimidine Inhibitor
 pdb|2C6L|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
           Triazolopyrimidine Inhibitor
 pdb|2C6M|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
           Triazolopyrimidine Inhibitor
 pdb|2C6O|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
           Triazolopyrimidine Inhibitor
 pdb|2EXM|A Chain A, Human Cdk2 In Complex With Isopentenyladenine
 pdb|1YKR|A Chain A, Crystal Structure Of Cdk2 With An Aminoimidazo Pyridine
           Inhibitor
 pdb|2A0C|X Chain X, Human Cdk2 In Complex With Olomoucine Ii, A Novel 2,6,9-
           Trisubstituted Purine Cyclin-Dependent Kinase Inhibitor
 pdb|2C5N|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
           Cdk2 Provides Insights For Drug Design
 pdb|2C5N|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
           Cdk2 Provides Insights For Drug Design
 pdb|2C5O|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
           Cdk2 Provides Insights For Drug Design
 pdb|2C5O|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
           Cdk2 Provides Insights For Drug Design
 pdb|2C5V|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
           Cdk2 Provides Insights For Drug Design
 pdb|2C5V|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
           Cdk2 Provides Insights For Drug Design
 pdb|2C5X|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
           Cdk2 Provides Insights For Drug Design
 pdb|2C5X|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
           Cdk2 Provides Insights For Drug Design
 pdb|2C5Y|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
           Cdk2 Provides Insights For Drug Design
 pdb|2A4L|A Chain A, Human Cyclin-Dependent Kinase 2 In Complex With
           Roscovitine
 pdb|2FVD|A Chain A, Cyclin Dependent Kinase 2 (Cdk2) With Diaminopyrimidine
           Inhibitor
 pdb|2I40|A Chain A, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
           INHIBITOR
 pdb|2I40|C Chain C, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
           INHIBITOR
 pdb|2CLX|A Chain A, 4-Arylazo-3,5-Diamino-1h-Pyrazole Cdk Inhibitors: Sar
           Study, Crystal Structure In Complex With Cdk2,
           Selectivity, And Cellular Effects
 pdb|2DUV|A Chain A, Structure Of Cdk2 With A 3-Hydroxychromones
 pdb|2UUE|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
           Groove Inhibitors
 pdb|2UUE|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
           Groove Inhibitors
 pdb|2UZN|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
           Thiazolidinone Inhibitor
 pdb|2UZO|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
           Thiazolidinone Inhibitor
 pdb|2V0D|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
           Thiazolidinone Inhibitor
 pdb|1AQ1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
           Inhibitor Staurosporine
 pdb|1HCK|A Chain A, Human Cyclin-Dependent Kinase 2
 pdb|1HCL|A Chain A, Human Cyclin-Dependent Kinase 2
 pdb|2J9M|A Chain A, Crystal Structure Of Cdk2 In Complex With Macrocyclic
           Aminopyrimidine
 pdb|2V22|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
           Groove Inhibitors
 pdb|2V22|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
           Groove Inhibitors
 pdb|2VTA|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
           Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
           (At7519), A Novel Cyclin Dependent Kinase Inhibitor
           Using Fragment- Based X-Ray Crystallography And
           Structure Based Drug Design.
 pdb|2VTH|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
           Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
           (At7519), A Novel Cyclin Dependent Kinase Inhibitor
           Using Fragment- Based X-Ray Crystallography And
           Structure Based Drug Design
 pdb|2VTI|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
           Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
           (At7519), A Novel Cyclin Dependent Kinase Inhibitor
           Using Fragment- Based X-Ray Crystallography And
           Structure Based Drug Design.
 pdb|2VTJ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
           Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
           (At7519), A Novel Cyclin Dependent Kinase Inhibitor
           Using Fragment- Based X-Ray Crystallography And
           Structure Based Drug Design.
 pdb|2VTL|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
           Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
           (At7519), A Novel Cyclin Dependent Kinase Inhibitor
           Using Fragment- Based X-Ray Crystallography And
           Structure Based Drug Design.
 pdb|2VTM|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
           Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
           (At7519), A Novel Cyclin Dependent Kinase Inhibitor
           Using Fragment- Based X-Ray Crystallography And
           Structure Based Drug Design.
 pdb|2VTN|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
           Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
           (At7519), A Novel Cyclin Dependent Kinase Inhibitor
           Using Fragment- Based X-Ray Crystallography And
           Structure Based Drug Design.
 pdb|2VTO|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
           Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
           (At7519), A Novel Cyclin Dependent Kinase Inhibitor
           Using Fragment- Based X-Ray Crystallography And
           Structure Based Drug Design.
 pdb|2VTP|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
           Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
           (At7519), A Novel Cyclin Dependent Kinase Inhibitor
           Using Fragment- Based X-Ray Crystallography And
           Structure Based Drug Design.
 pdb|2VTQ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
           Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
           (At7519), A Novel Cyclin Dependent Kinase Inhibitor
           Using Fragment- Based X-Ray Crystallography And
           Structure Based Drug Design.
 pdb|2VTR|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
           Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
           (At7519), A Novel Cyclin Dependent Kinase Inhibitor
           Using Fragment- Based X-Ray Crystallography And
           Structure Based Drug Design.
 pdb|2VTS|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
           Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
           (At7519), A Novel Cyclin Dependent Kinase Inhibitor
           Using Fragment- Based X-Ray Crystallography And
           Structure Based Drug Design.
 pdb|2VTT|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
           Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
           (At7519), A Novel Cyclin Dependent Kinase Inhibitor
           Using Fragment- Based X-Ray Crystallography And
           Structure Based Drug Design.
 pdb|2VU3|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
           Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
           (At7519), A Novel Cyclin Dependent Kinase Inhibitor
           Using Fragment- Based X-Ray Crystallography And
           Structure Based Drug Design.
 pdb|2R64|A Chain A, Crystal Structure Of A 3-Aminoindazole Compound With Cdk2
 pdb|2W05|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
           Pyrimidine, Compound 5b
 pdb|3EID|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
 pdb|3EID|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
 pdb|3EJ1|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
 pdb|3EJ1|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
 pdb|3EOC|A Chain A, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
 pdb|3EOC|C Chain C, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
 pdb|2W1H|A Chain A, Fragment-Based Discovery Of The Pyrazol-4-Yl Urea
           (At9283), A Multi-Targeted Kinase Inhibitor With Potent
           Aurora Kinase Activity
 pdb|3F5X|A Chain A, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
           Its Active Site
 pdb|3F5X|C Chain C, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
           Its Active Site
 pdb|3FZ1|A Chain A, Crystal Structure Of A Benzthiophene Inhibitor Bound To
           Human Cyclin-Dependent Kinase-2 (Cdk-2)
 pdb|2WEV|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
           Cyclin A Through Structure Guided Design
 pdb|2WEV|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
           Cyclin A Through Structure Guided Design
 pdb|2WFY|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
           Cyclin A Through Structure Guided Design
 pdb|2WFY|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
           Cyclin A Through Structure Guided Design
 pdb|2WHB|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
           Cyclin A Through Structure Guided Design
 pdb|2WHB|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
           Cyclin A Through Structure Guided Design
 pdb|2X1N|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
           Cyclin A Through Structure Guided Design
 pdb|2X1N|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
           Cyclin A Through Structure Guided Design
 pdb|3LFN|A Chain A, Crystal Structure Of Cdk2 With Sar57, An Aminoindazole
           Type Inhibitor
 pdb|3LFQ|A Chain A, Crystal Structure Of Cdk2 With Sar60, An Aminoindazole
           Type Inhibitor
 pdb|3LFS|A Chain A, Crystal Structure Of Cdk2 With Sar37, An Aminoindazole
           Type Inhibitor
 pdb|2XMY|A Chain A, Discovery And Characterisation Of
           2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
           Cdk Inhibitors As Anticancer Agents
 pdb|2XNB|A Chain A, Discovery And Characterisation Of
           2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
           Cdk Inhibitors As Anticancer Agents
 pdb|3LE6|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
           Pyrazolobenzodiazepine Inhibitor
 pdb|3NS9|A Chain A, Crystal Structure Of Cdk2 In Complex With Inhibitor Bs-194
 pdb|3S2P|A Chain A, Crystal Structure Of Cdk2 With A 2-Aminopyrimidine
           Compound
 pdb|3UNJ|A Chain A, Cdk2 In Complex With Inhibitor Yl1-038-31
 pdb|3UNK|A Chain A, Cdk2 In Complex With Inhibitor Yl5-083
 pdb|3TI1|A Chain A, Cdk2 In Complex With Sunitinib
 pdb|3TIY|A Chain A, Cdk2 In Complex With Nsc 35676
 pdb|3TIZ|A Chain A, Cdk2 In Complex With Nsc 111848
          Length = 298

 Score = 39.7 bits (91), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 404 EDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRH 462
           E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++ H
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKELNH 60

Query: 463 RNIVKLYGFCLHRKCMFLIY 482
            NIVKL         ++L++
Sbjct: 61  PNIVKLLDVIHTENKLYLVF 80


>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A
           Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine
          Length = 299

 Score = 39.7 bits (91), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 404 EDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRH 462
           E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++ H
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKELNH 61

Query: 463 RNIVKLYGFCLHRKCMFLIY 482
            NIVKL         ++L++
Sbjct: 62  PNIVKLLDVIHTENKLYLVF 81


>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2
           Complexed With A Nucleoside Inhibitor
          Length = 298

 Score = 39.7 bits (91), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 404 EDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRH 462
           E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++ H
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKELNH 60

Query: 463 RNIVKLYGFCLHRKCMFLIY 482
            NIVKL         ++L++
Sbjct: 61  PNIVKLLDVIHTENKLYLVF 80


>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
 pdb|3QHR|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
 pdb|3QHW|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
 pdb|3QHW|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
          Length = 298

 Score = 39.7 bits (91), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 404 EDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRH 462
           E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++ H
Sbjct: 4   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKELNH 62

Query: 463 RNIVKLYGFCLHRKCMFLIY 482
            NIVKL         ++L++
Sbjct: 63  PNIVKLLDVIHTENKLYLVF 82


>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
 pdb|1JST|C Chain C, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
 pdb|1JSU|A Chain A, P27(Kip1)CYCLIN ACDK2 COMPLEX
 pdb|1FQ1|B Chain B, Crystal Structure Of Kinase Associated Phosphatase (Kap)
           In Complex With Phospho-Cdk2
 pdb|2C6T|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
           Triazolopyrimidine Inhibitor
 pdb|2C6T|C Chain C, Crystal Structure Of The Human Cdk2 Complexed With The
           Triazolopyrimidine Inhibitor
 pdb|2CJM|A Chain A, Mechanism Of Cdk Inhibition By Active Site
           Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
           A Structure
 pdb|2CJM|C Chain C, Mechanism Of Cdk Inhibition By Active Site
           Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
           A Structure
 pdb|2UZB|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
           Thiazolidinone Inhibitor
 pdb|2UZB|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
           Thiazolidinone Inhibitor
 pdb|2UZD|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
           Thiazolidinone Inhibitor
 pdb|2UZD|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
           Thiazolidinone Inhibitor
 pdb|2UZE|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
           Thiazolidinone Inhibitor
 pdb|2UZE|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
           Thiazolidinone Inhibitor
 pdb|2UZL|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
           Thiazolidinone Inhibitor
 pdb|2UZL|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
           Thiazolidinone Inhibitor
 pdb|4II5|A Chain A, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
           Ion
 pdb|4II5|C Chain C, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
           Ion
          Length = 298

 Score = 39.3 bits (90), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 404 EDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRH 462
           E+F     IG G YG VY+AR   +G+VVALKK+              R  + LL ++ H
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKELNH 60

Query: 463 RNIVKLYGFCLHRKCMFLIY 482
            NIVKL         ++L++
Sbjct: 61  PNIVKLLDVIHTENKLYLVF 80


>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
           Receptors Of Jawless Vertebrates By Module Engineering
          Length = 279

 Score = 39.3 bits (90), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 2/149 (1%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAI 60
           +  L NL +L L+ N L         +L+ L+ L L  N L          LT LT L +
Sbjct: 81  LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140

Query: 61  ASNHINVSIPLEIGN-LNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPS 119
             N +  S+P  + + L  L  LDL  N+++      F  L +LK L L+ N+L      
Sbjct: 141 YHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDG 199

Query: 120 SLGHLTQLTTLNMRSNLINASLVNLTSLS 148
               LT LT + + +N  + +  ++  LS
Sbjct: 200 VFDRLTSLTHIWLLNNPWDCACSDILYLS 228


>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase
 pdb|3COK|B Chain B, Crystal Structure Of Plk4 Kinase
          Length = 278

 Score = 39.3 bits (90), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 399 IIEATEDFHIKYCIGTGGYGSVYRAR-LPSGKVVALKKLHCXXXXXXXXXXXFRNKARLL 457
           I E  EDF +   +G G +  VYRA  + +G  VA+K +              +N+ ++ 
Sbjct: 6   IGEKIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIH 65

Query: 458 SQIRHRNIVKLYGFCLHRKCMFLI 481
            Q++H +I++LY +      ++L+
Sbjct: 66  CQLKHPSILELYNYFEDSNYVYLV 89


>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
           Hagfish Vlrb.61
          Length = 570

 Score = 39.3 bits (90), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 107/242 (44%), Gaps = 26/242 (10%)

Query: 11  DLSDNYLWGYIP---------PTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIA 61
           D S N+ W ++          PTL +L  L+ L  +SN   GN  S +  L  L  L ++
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTL-KLKSLKRLTFTSNK-GGNAFSEVD-LPSLEFLDLS 355

Query: 62  SNHINVSIPLEIGNL--NFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVG---- 115
            N ++        +     L+ LDLS N +  ++ S F  L++L+ LD   + L      
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEF 414

Query: 116 PIPSSLGHLTQL----TTLNMRSNLINASLVNLTSLSLHYNNLT-GPIPSTLGHLNRIRI 170
            +  SL +L  L    T   +  N I   L +L  L +  N+     +P     L  +  
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 171 LDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGN-LKRVEAVKLYDNKLDGP 229
           LDLS+ +L    P++   L+ L  LNM SNQ+  S+P  I + L  ++ + L+ N  D  
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 533

Query: 230 IP 231
            P
Sbjct: 534 CP 535



 Score = 35.0 bits (79), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 25/146 (17%)

Query: 4   LRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGN-IPSTLGHLTQLTTLAIAS 62
           LRNL++LD+S  +           LS LE L ++ NS   N +P     L  LT      
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT------ 473

Query: 63  NHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLG 122
                              LDLS  ++    P+ F  L  L+ L+++ N+L         
Sbjct: 474 ------------------FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515

Query: 123 HLTQLTTLNMRSNLINASLVNLTSLS 148
            LT L  + + +N  + S   +  LS
Sbjct: 516 RLTSLQKIWLHTNPWDCSCPRIDYLS 541



 Score = 34.7 bits (78), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 31/68 (45%)

Query: 3   RLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIAS 62
            LRNL  LDLS   L    P     LS L+ L+++SN L          LT L  + + +
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527

Query: 63  NHINVSIP 70
           N  + S P
Sbjct: 528 NPWDCSCP 535



 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 56/147 (38%), Gaps = 16/147 (10%)

Query: 32  ENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRG 91
           +NL LS N L      +     +L  L ++   I         +L+ L  L L+GN I+ 
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 92  SIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHY 151
                F  L  L+ L   +  L       +GHL  L  LN+  NLI +            
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS------------ 138

Query: 152 NNLTGPIPSTLGHLNRIRILDLSENKL 178
                 +P    +L  +  LDLS NK+
Sbjct: 139 ----FKLPEYFSNLTNLEHLDLSSNKI 161


>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
           Receptors B59
 pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
           Receptors B59
          Length = 208

 Score = 38.9 bits (89), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 11/150 (7%)

Query: 90  RGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINA-------SLV 142
           R S+P+  G   +   LDL  N L          LT LT L +  N + +        L 
Sbjct: 19  RTSVPT--GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT 76

Query: 143 NLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQI 202
           +LT L+L  N L          L +++ L L+ N+L          LTQL  L +Y NQ+
Sbjct: 77  SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136

Query: 203 NGSIPLEIGN-LKRVEAVKLYDNKLDGPIP 231
             S+P  + + L  ++ + L+DN  D   P
Sbjct: 137 K-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 165



 Score = 37.0 bits (84), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 68/164 (41%), Gaps = 16/164 (9%)

Query: 34  LHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGN-LNFLQVLDLSGNEIRGS 92
           L L +NSL          LT LT L +  N +  S+P  + N L  L  L+LS N+++  
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSL 91

Query: 93  IPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINA-------SLVNLT 145
               F  L +LK L L+ N+L          LTQL  L +  N + +        L +L 
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151

Query: 146 SLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHL 189
            + LH N      P        IR L    NK  G + +S G +
Sbjct: 152 YIWLHDNPWDCTCPG-------IRYLSEWINKHSGVVRNSAGSV 188



 Score = 29.6 bits (65), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 62/163 (38%), Gaps = 24/163 (14%)

Query: 3   RLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIAS 62
            L +L  L L  N L         +L+ L  L+LS+N L          LTQL  LA+ +
Sbjct: 50  ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109

Query: 63  NHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLG 122
           N +  S+P  +                       F  L +LK L L QN+L         
Sbjct: 110 NQLQ-SLPDGV-----------------------FDKLTQLKDLRLYQNQLKSVPDGVFD 145

Query: 123 HLTQLTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
            LT L  + +  N  + +   +  LS   N  +G + ++ G +
Sbjct: 146 RLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSV 188


>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
          Length = 279

 Score = 38.9 bits (89), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 403 TEDFHIKYCIGTGGYGSVYRARLPS-GKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIR 461
            ED+ + Y IGTG YG   + R  S GK++  K+L               ++  LL +++
Sbjct: 5   AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLV-SEVNLLRELK 63

Query: 462 HRNIVKLYGFCLHR 475
           H NIV+ Y   + R
Sbjct: 64  HPNIVRYYDRIIDR 77


>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
 pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
 pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
 pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
 pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
 pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
 pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
 pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
 pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
 pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
 pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
 pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
 pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
 pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
 pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
 pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
          Length = 279

 Score = 38.5 bits (88), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 403 TEDFHIKYCIGTGGYGSVYRARLPS-GKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIR 461
            ED+ + Y IGTG YG   + R  S GK++  K+L               ++  LL +++
Sbjct: 5   AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLV-SEVNLLRELK 63

Query: 462 HRNIVKLYGFCLHR 475
           H NIV+ Y   + R
Sbjct: 64  HPNIVRYYDRIIDR 77


>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand
 pdb|2W5B|A Chain A, Human Nek2 Kinase Atpgammas-bound
 pdb|2W5H|A Chain A, Human Nek2 Kinase Apo
          Length = 279

 Score = 38.5 bits (88), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 403 TEDFHIKYCIGTGGYGSVYRARLPS-GKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIR 461
            ED+ + Y IGTG YG   + R  S GK++  K+L               ++  LL +++
Sbjct: 5   AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELD-YGSMTEAEKQMLVSEVNLLRELK 63

Query: 462 HRNIVKLYGFCLHR 475
           H NIV+ Y   + R
Sbjct: 64  HPNIVRYYDRIIDR 77


>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights
           Into Receptor Autoregulation
          Length = 343

 Score = 38.1 bits (87), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 8/77 (10%)

Query: 412 IGTGGYGSVYRARLPS------GKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNI 465
           IG G +G V++AR P         +VA+K L             F+ +A L+++  + NI
Sbjct: 55  IGEGAFGRVFQARAPGLLPYEPFTMVAVKMLK--EEASADMQADFQREAALMAEFDNPNI 112

Query: 466 VKLYGFCLHRKCMFLIY 482
           VKL G C   K M L++
Sbjct: 113 VKLLGVCAVGKPMCLLF 129


>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
 pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
 pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
          Length = 329

 Score = 38.1 bits (87), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 9/84 (10%)

Query: 405 DFHIKYCIGTGGYGSVYRAR----LPSGK--VVALKKLHCXXXXXXXXXXXFRNKARLLS 458
           D  +K+ +G G +G V+ A     LP     +VA+K L             F+ +A LL+
Sbjct: 42  DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKAL---KEASESARQDFQREAELLT 98

Query: 459 QIRHRNIVKLYGFCLHRKCMFLIY 482
            ++H++IV+ +G C   + + +++
Sbjct: 99  MLQHQHIVRFFGVCTEGRPLLMVF 122


>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
           The Structures Cdk6-P19ink4d Inhibitor Complex
 pdb|1BI8|C Chain C, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
           The Structures Cdk6-P19ink4d Inhibitor Complex
 pdb|1BI7|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
           The Structure Of The Cdk6-P16ink4a Tumor Suppressor
           Complex
 pdb|1BLX|A Chain A, P19ink4dCDK6 COMPLEX
 pdb|1G3N|A Chain A, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
 pdb|1G3N|E Chain E, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
          Length = 326

 Score = 37.7 bits (86), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 399 IIEATEDFHIKYCIGTGGYGSVYRAR--LPSGKVVALKKLHCXXXXXXXXXXXFRNKA-- 454
           +  A + +     IG G YG V++AR     G+ VALK++              R  A  
Sbjct: 6   LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVL 65

Query: 455 RLLSQIRHRNIVKLYGFC 472
           R L    H N+V+L+  C
Sbjct: 66  RHLETFEHPNVVRLFDVC 83


>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
 pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
          Length = 301

 Score = 37.7 bits (86), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 392 GRITFQDIIEAT-EDFHIKYC--IGTGGYGSVYRARLP-----SGKVVALKKLHCXXXXX 443
           G + F+D      E+ H+K+   +G G +GSV   R       +G+VVA+KKL       
Sbjct: 1   GAMAFEDRDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQ---HST 57

Query: 444 XXXXXXFRNKARLLSQIRHRNIVKLYGFC 472
                 F  +  +L  ++H NIVK  G C
Sbjct: 58  EEHLRDFEREIEILKSLQHDNIVKYKGVC 86


>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
          Length = 306

 Score = 37.7 bits (86), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 9/84 (10%)

Query: 405 DFHIKYCIGTGGYGSVYRAR----LPSGK--VVALKKLHCXXXXXXXXXXXFRNKARLLS 458
           D  +K+ +G G +G V+ A     LP     +VA+K L             F+ +A LL+
Sbjct: 19  DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKAL---KEASESARQDFQREAELLT 75

Query: 459 QIRHRNIVKLYGFCLHRKCMFLIY 482
            ++H++IV+ +G C   + + +++
Sbjct: 76  MLQHQHIVRFFGVCTEGRPLLMVF 99


>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
 pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
          Length = 300

 Score = 37.7 bits (86), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 9/84 (10%)

Query: 405 DFHIKYCIGTGGYGSVYRAR----LPSGK--VVALKKLHCXXXXXXXXXXXFRNKARLLS 458
           D  +K+ +G G +G V+ A     LP     +VA+K L             F+ +A LL+
Sbjct: 13  DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKAL---KEASESARQDFQREAELLT 69

Query: 459 QIRHRNIVKLYGFCLHRKCMFLIY 482
            ++H++IV+ +G C   + + +++
Sbjct: 70  MLQHQHIVRFFGVCTEGRPLLMVF 93


>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
           First Ig Domain From Robo1
          Length = 220

 Score = 37.4 bits (85), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 63/144 (43%), Gaps = 15/144 (10%)

Query: 44  NIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRL 103
           N+P T+      T + +  N I V  P        L+ +DLS N+I    P  F  L+ L
Sbjct: 29  NLPETI------TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82

Query: 104 KSLDLSQNKLVGPIPSSLGH-LTQLTTLNMRSNLINA-------SLVNLTSLSLHYNNLT 155
            SL L  NK+   +P SL   L  L  L + +N IN         L NL  LSL+ N L 
Sbjct: 83  NSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141

Query: 156 GPIPSTLGHLNRIRILDLSENKLV 179
                T   L  I+ + L++N  +
Sbjct: 142 TIAKGTFSPLRAIQTMHLAQNPFI 165



 Score = 31.2 bits (69), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 29/59 (49%)

Query: 144 LTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQI 202
           +T + L  N +    P       ++R +DLS N++    P +   L  LN+L +Y N+I
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92



 Score = 31.2 bits (69), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 50/110 (45%)

Query: 5   RNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNH 64
           + L  +DLS+N +    P     L  L +L L  N +     S    L  L  L + +N 
Sbjct: 56  KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115

Query: 65  INVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLV 114
           IN        +L+ L +L L  N+++     TF  L+ ++++ L+QN  +
Sbjct: 116 INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165


>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
 pdb|3NUX|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
 pdb|4AUA|A Chain A, Liganded X-ray Crystal Structure Of Cyclin Dependent
           Kinase 6 (cdk6)
 pdb|4EZ5|A Chain A, Cdk6 (monomeric) In Complex With Inhibitor
          Length = 307

 Score = 37.4 bits (85), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 399 IIEATEDFHIKYCIGTGGYGSVYRAR--LPSGKVVALKKLHCXXXXXXXXXXXFRNKA-- 454
           +  A + +     IG G YG V++AR     G+ VALK++              R  A  
Sbjct: 6   LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVL 65

Query: 455 RLLSQIRHRNIVKLYGFC 472
           R L    H N+V+L+  C
Sbjct: 66  RHLETFEHPNVVRLFDVC 83


>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
 pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
           Double-Stranded Rna
 pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
           Double-Stranded Rna
          Length = 697

 Score = 37.4 bits (85), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 123/295 (41%), Gaps = 29/295 (9%)

Query: 4   LRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSS-----NSLVGNIPSTLGHLTQLTTL 58
           L+ L +L++ DN +      T   L  L+ L LS       +L      +L H + L TL
Sbjct: 328 LKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAH-SPLLTL 386

Query: 59  AIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIP-STFGHLKRLKSLDLSQNKLVGPI 117
            +  NHI+         L  L++LDL  NEI   +    +  L+ +  + LS NK +   
Sbjct: 387 NLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLS 446

Query: 118 PSSLGHLTQLTTLNMRS-NLINAS--------LVNLTSLSLHYNNLTGPIPSTLGHLNRI 168
            SS   +  L  L +R   L N          L NLT L L  NN+       L  L  +
Sbjct: 447 TSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENL 506

Query: 169 RILDLSENKLV---------GPIPSSVGHLTQLNTLNMYSNQINGSIPLEI-GNLKRVEA 218
            ILD   N L          GP+    G L+ L+ LN+ SN ++  IP+ +  NL  +++
Sbjct: 507 EILDFQHNNLARLWKRANPGGPVNFLKG-LSHLHILNLESNGLD-EIPVGVFKNLFELKS 564

Query: 219 VKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIG-KLQELYYLDLSHN 272
           + L  N L+   P    + + L  L L  NL+        G   Q L  LD+  N
Sbjct: 565 INLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVEKDVFGPPFQNLNSLDMRFN 619



 Score = 36.6 bits (83), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 128/302 (42%), Gaps = 37/302 (12%)

Query: 29  SKLENLHLSSNSLVGNIPSTLGHL--TQLTTLAIASNHINVSIPLEIGNLNF-----LQV 81
           + ++NL L++N L+    ST   L  T LT L ++ N+++     ++GN +F     L+ 
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLH-----DVGNGSFSYLPSLRY 276

Query: 82  LDLSGNEIRGSIPSTFGHLKRLKSLDLS-----QNKLVGPIPS----SLGHLTQLTTLNM 132
           L L  N I+   P +F  L  L+ L L      Q+  +   P+    S   L  L  LNM
Sbjct: 277 LSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNM 336

Query: 133 RSNLINAS-------LVNLTSLSLH-----YNNLTGPIPSTLGHLNRIRILDLSENKLVG 180
             N I ++       LV+L  LSL         LT     +L H + +  L+L++N +  
Sbjct: 337 DDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAH-SPLLTLNLTKNHISK 395

Query: 181 PIPSSVGHLTQLNTLNMYSNQINGSIP-LEIGNLKRVEAVKLYDNKLDGPIPPELMNCSK 239
               +   L QL  L++  N+I   +   E   L+ +  + L  NK              
Sbjct: 396 IANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPS 455

Query: 240 LMELELGNNLLRGS--IPSEIGKLQELYYLDLSHNFINGKILSELGAIPSIDTVDLSMNN 297
           L  L L    L+     PS    L+ L  LDLS+N I       L  + +++ +D   NN
Sbjct: 456 LQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNN 515

Query: 298 LS 299
           L+
Sbjct: 516 LA 517



 Score = 35.4 bits (80), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 119/290 (41%), Gaps = 24/290 (8%)

Query: 34  LHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSI 93
           L+L+ N L    P+     +QL  L    N I+   P     L  L+VL+L  NE+    
Sbjct: 30  LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQIS 89

Query: 94  PSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHYNN 153
             TF     L  LDL  N +         H  +      + NLI         L L +N 
Sbjct: 90  DQTFVFCTNLTELDLMSNSI---------HKIKSNPFKNQKNLI--------KLDLSHNG 132

Query: 154 LTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHL--TQLNTLNMYSNQINGSIPLEIG 211
           L+     T   L  ++ L L++NK++      +  L  + L  L++ SN +    P    
Sbjct: 133 LSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQ 192

Query: 212 NLKRVEAVKLYDNKLDGPIPPEL---MNCSKLMELELGNNLLRGSIPSEIG--KLQELYY 266
            + ++ A+ L + +L+  +  +L   ++ + +  L L NN L  +  S     K   L  
Sbjct: 193 TIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQ 252

Query: 267 LDLSHNFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSVRKVPHLDVLG 316
           LDLS+N ++         +PS+  + L  NN+    P+S   + +L  L 
Sbjct: 253 LDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLS 302



 Score = 33.5 bits (75), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 49/105 (46%)

Query: 168 IRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDNKLD 227
           I +L+L+ N+L    P++    +QL  L+   N I+   P     L  ++ + L  N+L 
Sbjct: 27  ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86

Query: 228 GPIPPELMNCSKLMELELGNNLLRGSIPSEIGKLQELYYLDLSHN 272
                  + C+ L EL+L +N +     +     + L  LDLSHN
Sbjct: 87  QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHN 131


>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
           Inhibitor
 pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
           Inhibitor
          Length = 326

 Score = 37.4 bits (85), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 404 EDFHIKYC--IGTGGYGSVYRARLP-----SGKVVALKKLHCXXXXXXXXXXXFRNKARL 456
           E+ H+K+   +G G +GSV   R       +G+VVA+KKL             F  +  +
Sbjct: 39  EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQ---HSTEEHLRDFEREIEI 95

Query: 457 LSQIRHRNIVKLYGFC 472
           L  ++H NIVK  G C
Sbjct: 96  LKSLQHDNIVKYKGVC 111


>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of
           Cyclin-Dependent Kinase Inhibitors Identified Through
           Structure-Based Hybridisation
          Length = 299

 Score = 37.4 bits (85), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 404 EDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRH 462
           E+F     IG G YG VY+AR   +G+VVAL K+              R  + LL ++ H
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREIS-LLKELNH 61

Query: 463 RNIVKLYGFCLHRKCMFLIY 482
            NIVKL         ++L++
Sbjct: 62  PNIVKLLDVIHTENKLYLVF 81


>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
           Pyrimidine Cdk4 Inhibitor
          Length = 298

 Score = 37.4 bits (85), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 404 EDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRH 462
           E+F     IG G YG VY+AR   +G+VVAL K+              R  + LL ++ H
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREIS-LLKELNH 60

Query: 463 RNIVKLYGFCLHRKCMFLIY 482
            NIVKL         ++L++
Sbjct: 61  PNIVKLLDVIHTENKLYLVF 80


>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
           Cyclin
 pdb|1XO2|B Chain B, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
           Complex With A Flavonol Inhibitor, Fisetin
 pdb|2EUF|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
           Inhibitor Pd0332991
 pdb|2F2C|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
           Aminopurvalanol
          Length = 308

 Score = 37.4 bits (85), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 399 IIEATEDFHIKYCIGTGGYGSVYRAR--LPSGKVVALKKLHCXXXXXXXXXXXFRNKA-- 454
           +  A + +     IG G YG V++AR     G+ VALK++              R  A  
Sbjct: 6   LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVL 65

Query: 455 RLLSQIRHRNIVKLYGFC 472
           R L    H N+V+L+  C
Sbjct: 66  RHLETFEHPNVVRLFDVC 83


>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
 pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
 pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
 pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
          Length = 298

 Score = 37.4 bits (85), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 404 EDFHIKYC--IGTGGYGSVYRARLP-----SGKVVALKKLHCXXXXXXXXXXXFRNKARL 456
           E+ H+K+   +G G +GSV   R       +G+VVA+KKL             F  +  +
Sbjct: 11  EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQ---HSTEEHLRDFEREIEI 67

Query: 457 LSQIRHRNIVKLYGFC 472
           L  ++H NIVK  G C
Sbjct: 68  LKSLQHDNIVKYKGVC 83


>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
           1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
          Length = 303

 Score = 37.4 bits (85), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 404 EDFHIKYC--IGTGGYGSVYRARLP-----SGKVVALKKLHCXXXXXXXXXXXFRNKARL 456
           E+ H+K+   +G G +GSV   R       +G+VVA+KKL             F  +  +
Sbjct: 12  EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQ---HSTEEHLRDFEREIEI 68

Query: 457 LSQIRHRNIVKLYGFC 472
           L  ++H NIVK  G C
Sbjct: 69  LKSLQHDNIVKYKGVC 84


>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
 pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
 pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
          Length = 293

 Score = 37.4 bits (85), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 404 EDFHIKYC--IGTGGYGSVYRARLP-----SGKVVALKKLHCXXXXXXXXXXXFRNKARL 456
           E+ H+K+   +G G +GSV   R       +G+VVA+KKL             F  +  +
Sbjct: 7   EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQ---HSTEEHLRDFEREIEI 63

Query: 457 LSQIRHRNIVKLYGFC 472
           L  ++H NIVK  G C
Sbjct: 64  LKSLQHDNIVKYKGVC 79


>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
           Potent And Specific Pan-Janus Kinase Inhibitor
 pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
           Potent And Specific Pan-Janus Kinase Inhibitor
 pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
 pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
          Length = 293

 Score = 37.4 bits (85), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 404 EDFHIKYC--IGTGGYGSVYRARLP-----SGKVVALKKLHCXXXXXXXXXXXFRNKARL 456
           E+ H+K+   +G G +GSV   R       +G+VVA+KKL             F  +  +
Sbjct: 6   EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQ---HSTEEHLRDFEREIEI 62

Query: 457 LSQIRHRNIVKLYGFC 472
           L  ++H NIVK  G C
Sbjct: 63  LKSLQHDNIVKYKGVC 78


>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
           2,8-Diaryl Quinoxaline Inhibitor
 pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
           2,8-Diaryl Quinoxaline Inhibitor
 pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
           Quinoxaline Atp Site Inhibitor
          Length = 295

 Score = 37.4 bits (85), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 404 EDFHIKYC--IGTGGYGSVYRARLP-----SGKVVALKKLHCXXXXXXXXXXXFRNKARL 456
           E+ H+K+   +G G +GSV   R       +G+VVA+KKL             F  +  +
Sbjct: 8   EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQ---HSTEEHLRDFEREIEI 64

Query: 457 LSQIRHRNIVKLYGFC 472
           L  ++H NIVK  G C
Sbjct: 65  LKSLQHDNIVKYKGVC 80


>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
           Inhibitor
 pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
           Inhibitor
          Length = 301

 Score = 37.4 bits (85), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 404 EDFHIKYC--IGTGGYGSVYRARLP-----SGKVVALKKLHCXXXXXXXXXXXFRNKARL 456
           E+ H+K+   +G G +GSV   R       +G+VVA+KKL             F  +  +
Sbjct: 8   EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQ---HSTEEHLRDFEREIEI 64

Query: 457 LSQIRHRNIVKLYGFC 472
           L  ++H NIVK  G C
Sbjct: 65  LKSLQHDNIVKYKGVC 80


>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
 pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
          Length = 298

 Score = 37.4 bits (85), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 404 EDFHIKYC--IGTGGYGSVYRARLP-----SGKVVALKKLHCXXXXXXXXXXXFRNKARL 456
           E+ H+K+   +G G +GSV   R       +G+VVA+KKL             F  +  +
Sbjct: 11  EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQ---HSTEEHLRDFEREIEI 67

Query: 457 LSQIRHRNIVKLYGFC 472
           L  ++H NIVK  G C
Sbjct: 68  LKSLQHDNIVKYKGVC 83


>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
 pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
          Length = 300

 Score = 37.0 bits (84), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 404 EDFHIKYC--IGTGGYGSVYRARLP-----SGKVVALKKLHCXXXXXXXXXXXFRNKARL 456
           E+ H+K+   +G G +GSV   R       +G+VVA+KKL             F  +  +
Sbjct: 13  EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQ---HSTEEHLRDFEREIEI 69

Query: 457 LSQIRHRNIVKLYGFC 472
           L  ++H NIVK  G C
Sbjct: 70  LKSLQHDNIVKYKGVC 85


>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
 pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
 pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
 pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
 pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
           Imidazo-Pyrrolopyridines As Potent And Orally
           Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
 pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
           Imidazo-Pyrrolopyridines As Potent And Orally
           Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
 pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
           Imidazo-Pyrrolopyridines As Potent And Orally
           Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
          Length = 302

 Score = 37.0 bits (84), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 404 EDFHIKYC--IGTGGYGSVYRARLP-----SGKVVALKKLHCXXXXXXXXXXXFRNKARL 456
           E+ H+K+   +G G +GSV   R       +G+VVA+KKL             F  +  +
Sbjct: 15  EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQ---HSTEEHLRDFEREIEI 71

Query: 457 LSQIRHRNIVKLYGFC 472
           L  ++H NIVK  G C
Sbjct: 72  LKSLQHDNIVKYKGVC 87


>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
          Length = 311

 Score = 37.0 bits (84), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 404 EDFHIKYC--IGTGGYGSVYRARLP-----SGKVVALKKLHCXXXXXXXXXXXFRNKARL 456
           E+ H+K+   +G G +GSV   R       +G+VVA+KKL             F  +  +
Sbjct: 26  EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQ---HSTEEHLRDFEREIEI 82

Query: 457 LSQIRHRNIVKLYGFC 472
           L  ++H NIVK  G C
Sbjct: 83  LKSLQHDNIVKYKGVC 98


>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
           Compound 7
 pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
           Compound 7
 pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
           Compound 12
 pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
           Compound 12
          Length = 298

 Score = 37.0 bits (84), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 404 EDFHIKYC--IGTGGYGSVYRARLP-----SGKVVALKKLHCXXXXXXXXXXXFRNKARL 456
           E+ H+K+   +G G +GSV   R       +G+VVA+KKL             F  +  +
Sbjct: 11  EERHLKFLRQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQ---HSTEEHLRDFEREIEI 67

Query: 457 LSQIRHRNIVKLYGFC 472
           L  ++H NIVK  G C
Sbjct: 68  LKSLQHDNIVKYKGVC 83


>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
           Inhibitors Of Jak2
 pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
           Inhibitors Of Jak2
 pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
          Length = 313

 Score = 37.0 bits (84), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 404 EDFHIKYC--IGTGGYGSVYRARLP-----SGKVVALKKLHCXXXXXXXXXXXFRNKARL 456
           E+ H+K+   +G G +GSV   R       +G+VVA+KKL             F  +  +
Sbjct: 26  EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQ---HSTEEHLRDFEREIEI 82

Query: 457 LSQIRHRNIVKLYGFC 472
           L  ++H NIVK  G C
Sbjct: 83  LKSLQHDNIVKYKGVC 98


>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
           To Appcp From D. Discoideum
          Length = 287

 Score = 37.0 bits (84), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKL----HCXXXXXXXXXXXFRNKARL 456
           A  +   +  IG GG+G V++ RL   K VVA+K L                 F+ +  +
Sbjct: 17  ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76

Query: 457 LSQIRHRNIVKLYG 470
           +S + H NIVKLYG
Sbjct: 77  MSNLNHPNIVKLYG 90


>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
           Inhibtor Nvp-Bbt594
          Length = 295

 Score = 37.0 bits (84), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 404 EDFHIKYC--IGTGGYGSVYRARLP-----SGKVVALKKLHCXXXXXXXXXXXFRNKARL 456
           E+ H+K+   +G G +GSV   R       +G+VVA+KKL             F  +  +
Sbjct: 8   EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQ---HSTEEHLRDFEREIEI 64

Query: 457 LSQIRHRNIVKLYGFC 472
           L  ++H NIVK  G C
Sbjct: 65  LKSLQHDNIVKYKGVC 80


>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
           Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
           Resolution
 pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
           Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
           Resolution
 pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
           Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
           Resolution
          Length = 290

 Score = 37.0 bits (84), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 75/166 (45%), Gaps = 14/166 (8%)

Query: 21  IPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEI-GNLNFL 79
           +PP L + + +  LHLS N L     +TL   T+LT L +    +     L++ G L  L
Sbjct: 25  LPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVL 79

Query: 80  QVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINA 139
             LDLS N+++ S+P     L  L  LD+S N+L      +L  L +L  L ++ N +  
Sbjct: 80  GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138

Query: 140 -------SLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKL 178
                      L  LSL  NNLT      L  L  +  L L EN L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184



 Score = 29.6 bits (65), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 68/153 (44%), Gaps = 12/153 (7%)

Query: 10  LDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSI 69
           L LS+N L+ +   TL   ++L  L+L    L        G L  L TL ++ N +  S+
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ-SL 92

Query: 70  PLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTT 129
           PL    L  L VLD+S N +          L  L+ L L  N+L    P  L    +L  
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152

Query: 130 LNMRSN--------LINASLVNLTSLSLHYNNL 154
           L++ +N        L+N  L NL +L L  N+L
Sbjct: 153 LSLANNNLTELPAGLLNG-LENLDTLLLQENSL 184



 Score = 28.5 bits (62), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 13/121 (10%)

Query: 212 NLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIGKLQELYYLDLSH 271
           NL R E  KL   ++DG +P        L  L+L +N L+ S+P     L  L  LD+S 
Sbjct: 61  NLDRAELTKL---QVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109

Query: 272 NFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSVRKVPHLD--VLGNNLEGEIPSTSAN 329
           N +    L  L  +  +  + L  N L    P  +   P L+   L NN   E+P+   N
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169

Query: 330 G 330
           G
Sbjct: 170 G 170


>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
           Appcp From D. Discoideum
 pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
           Discoideum
 pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
           Discoideum Bound To The Rock Inhibitor H1152
          Length = 287

 Score = 37.0 bits (84), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKL----HCXXXXXXXXXXXFRNKARL 456
           A  +   +  IG GG+G V++ RL   K VVA+K L                 F+ +  +
Sbjct: 17  ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76

Query: 457 LSQIRHRNIVKLYG 470
           +S + H NIVKLYG
Sbjct: 77  MSNLNHPNIVKLYG 90


>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
           From D. Discoideum Bound To Appcp
          Length = 287

 Score = 37.0 bits (84), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLPSGK-VVALKKL----HCXXXXXXXXXXXFRNKARL 456
           A  +   +  IG GG+G V++ RL   K VVA+K L                 F+ +  +
Sbjct: 17  ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76

Query: 457 LSQIRHRNIVKLYG 470
           +S + H NIVKLYG
Sbjct: 77  MSNLNHPNIVKLYG 90


>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
           Gpib-alpha And Human Alpha-thrombin
          Length = 290

 Score = 37.0 bits (84), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 75/166 (45%), Gaps = 14/166 (8%)

Query: 21  IPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEI-GNLNFL 79
           +PP L + + +  LHLS N L     +TL   T+LT L +    +     L++ G L  L
Sbjct: 25  LPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVL 79

Query: 80  QVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINA 139
             LDLS N+++ S+P     L  L  LD+S N+L      +L  L +L  L ++ N +  
Sbjct: 80  GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138

Query: 140 -------SLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKL 178
                      L  LSL  NNLT      L  L  +  L L EN L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184



 Score = 29.6 bits (65), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 68/153 (44%), Gaps = 12/153 (7%)

Query: 10  LDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSI 69
           L LS+N L+ +   TL   ++L  L+L    L        G L  L TL ++ N +  S+
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ-SL 92

Query: 70  PLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTT 129
           PL    L  L VLD+S N +          L  L+ L L  N+L    P  L    +L  
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152

Query: 130 LNMRSN--------LINASLVNLTSLSLHYNNL 154
           L++ +N        L+N  L NL +L L  N+L
Sbjct: 153 LSLANNNLTELPAGLLNG-LENLDTLLLQENSL 184



 Score = 28.5 bits (62), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 13/121 (10%)

Query: 212 NLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIGKLQELYYLDLSH 271
           NL R E  KL   ++DG +P        L  L+L +N L+ S+P     L  L  LD+S 
Sbjct: 61  NLDRAELTKL---QVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109

Query: 272 NFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSVRKVPHLD--VLGNNLEGEIPSTSAN 329
           N +    L  L  +  +  + L  N L    P  +   P L+   L NN   E+P+   N
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169

Query: 330 G 330
           G
Sbjct: 170 G 170


>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
 pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
 pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
 pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
 pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
 pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
 pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
 pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
          Length = 298

 Score = 37.0 bits (84), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 404 EDFHIKYC--IGTGGYGSVYRARLP-----SGKVVALKKLHCXXXXXXXXXXXFRNKARL 456
           E+ H+K+   +G G +GSV   R       +G+VVA+KKL             F  +  +
Sbjct: 9   EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQ---HSTEEHLRDFEREIEI 65

Query: 457 LSQIRHRNIVKLYGFC 472
           L  ++H NIVK  G C
Sbjct: 66  LKSLQHDNIVKYKGVC 81


>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
           Interaction With Two Distinct Alpha-Thrombin Sites
          Length = 290

 Score = 37.0 bits (84), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 75/166 (45%), Gaps = 14/166 (8%)

Query: 21  IPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEI-GNLNFL 79
           +PP L + + +  LHLS N L     +TL   T+LT L +    +     L++ G L  L
Sbjct: 25  LPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVL 79

Query: 80  QVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINA 139
             LDLS N+++ S+P     L  L  LD+S N+L      +L  L +L  L ++ N +  
Sbjct: 80  GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138

Query: 140 -------SLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKL 178
                      L  LSL  NNLT      L  L  +  L L EN L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184



 Score = 29.6 bits (65), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 68/153 (44%), Gaps = 12/153 (7%)

Query: 10  LDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSI 69
           L LS+N L+ +   TL   ++L  L+L    L        G L  L TL ++ N +  S+
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ-SL 92

Query: 70  PLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTT 129
           PL    L  L VLD+S N +          L  L+ L L  N+L    P  L    +L  
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152

Query: 130 LNMRSN--------LINASLVNLTSLSLHYNNL 154
           L++ +N        L+N  L NL +L L  N+L
Sbjct: 153 LSLANNNLTELPAGLLNG-LENLDTLLLQENSL 184



 Score = 28.5 bits (62), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 13/121 (10%)

Query: 212 NLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIGKLQELYYLDLSH 271
           NL R E  KL   ++DG +P        L  L+L +N L+ S+P     L  L  LD+S 
Sbjct: 61  NLDRAELTKL---QVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109

Query: 272 NFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSVRKVPHLD--VLGNNLEGEIPSTSAN 329
           N +    L  L  +  +  + L  N L    P  +   P L+   L NN   E+P+   N
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169

Query: 330 G 330
           G
Sbjct: 170 G 170


>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
 pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
 pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
 pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
          Length = 220

 Score = 37.0 bits (84), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 63/144 (43%), Gaps = 15/144 (10%)

Query: 44  NIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRL 103
           N+P T+      T + +  N I V  P        L+ +DLS N+I    P  F  L+ L
Sbjct: 29  NLPETI------TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82

Query: 104 KSLDLSQNKLVGPIPSSLGH-LTQLTTLNMRSNLIN-------ASLVNLTSLSLHYNNLT 155
            SL L  NK+   +P SL   L  L  L + +N IN         L NL  LSL+ N L 
Sbjct: 83  NSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQ 141

Query: 156 GPIPSTLGHLNRIRILDLSENKLV 179
                T   L  I+ + L++N  +
Sbjct: 142 TIAKGTFSPLRAIQTMHLAQNPFI 165



 Score = 31.2 bits (69), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 29/59 (49%)

Query: 144 LTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQI 202
           +T + L  N +    P       ++R +DLS N++    P +   L  LN+L +Y N+I
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92



 Score = 30.4 bits (67), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 50/110 (45%)

Query: 5   RNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNH 64
           + L  +DLS+N +    P     L  L +L L  N +     S    L  L  L + +N 
Sbjct: 56  KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115

Query: 65  INVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLV 114
           IN        +L+ L +L L  N+++     TF  L+ ++++ L+QN  +
Sbjct: 116 INXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165


>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
           Monocytogenes
          Length = 263

 Score = 37.0 bits (84), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 61/133 (45%), Gaps = 25/133 (18%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSL--VGNIPS----------- 47
           M    NL  L LS N +    P  L  L+KLE L ++ N L  +  IPS           
Sbjct: 59  MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNN 116

Query: 48  ------TLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLK 101
                 +L HL  L  L+I +N +   + L  G L+ L+VLDL GNEI  +       LK
Sbjct: 117 ELRDTDSLIHLKNLEILSIRNNKLKSIVML--GFLSKLEVLDLHGNEITNT--GGLTRLK 172

Query: 102 RLKSLDLSQNKLV 114
           ++  +DL+  K V
Sbjct: 173 KVNWIDLTGQKCV 185


>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
 pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
          Length = 606

 Score = 37.0 bits (84), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 13/157 (8%)

Query: 3   RLRNLVH--LDLSDNYLWGYIPPTLGRLSKLENLHLSSNSL-VGNIPST--LGHLTQLTT 57
           ++ NL H  LD+S   L+  +P        L++L+L  N    GNI  T  L  L +L  
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPA-------LQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480

Query: 58  LAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPI 117
           L ++   ++        +L  +  +DLS N +  S      HLK +  L+L+ N +   +
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIIL 539

Query: 118 PSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHYNNL 154
           PS L  L+Q  T+N+R N ++ +  N+  L  +  N+
Sbjct: 540 PSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENM 576



 Score = 36.2 bits (82), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 113/283 (39%), Gaps = 64/283 (22%)

Query: 7   LVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSL-------VGNIPS------------ 47
           L  LDL+  +L   +P  L  LS L+ L LS+N           N PS            
Sbjct: 280 LQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338

Query: 48  ------TLGHLTQLTTLAIASNHINVS--IPLEIGNLNFLQVLDLSGNEIRGSIPSTFGH 99
                  L +L  L  L ++ + I  S    L++ NL+ LQ L+LS NE        F  
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398

Query: 100 LKRLKSLDLSQNKL-VGPIPSSLGHLTQLTTLNMRSNLINAS-------LVNLTSLSLHY 151
             +L+ LDL+  +L V    S   +L  L  LN+  +L++ S       L  L  L+L  
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458

Query: 152 NNL-TGPIPST--LGHLNRIRIL------------------------DLSENKLVGPIPS 184
           N+   G I  T  L  L R+ IL                        DLS N+L      
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518

Query: 185 SVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDNKLD 227
           ++ HL  +  LN+ SN I+  +P  +  L +   + L  N LD
Sbjct: 519 ALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560


>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
           Gpib-alpha And Alpha-thrombin At 2.6a
          Length = 279

 Score = 36.6 bits (83), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 75/166 (45%), Gaps = 14/166 (8%)

Query: 21  IPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEI-GNLNFL 79
           +PP L + + +  LHLS N L     +TL   T+LT L +    +     L++ G L  L
Sbjct: 25  LPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELT---KLQVDGTLPVL 79

Query: 80  QVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINA 139
             LDLS N+++ S+P     L  L  LD+S N+L      +L  L +L  L ++ N +  
Sbjct: 80  GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138

Query: 140 -------SLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKL 178
                      L  LSL  NNLT      L  L  +  L L EN L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184



 Score = 29.3 bits (64), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 68/153 (44%), Gaps = 12/153 (7%)

Query: 10  LDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSI 69
           L LS+N L+ +   TL   ++L  L+L    L        G L  L TL ++ N +  S+
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ-SL 92

Query: 70  PLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTT 129
           PL    L  L VLD+S N +          L  L+ L L  N+L    P  L    +L  
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152

Query: 130 LNMRSN--------LINASLVNLTSLSLHYNNL 154
           L++ +N        L+N  L NL +L L  N+L
Sbjct: 153 LSLANNNLTELPAGLLNG-LENLDTLLLQENSL 184



 Score = 28.9 bits (63), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 13/121 (10%)

Query: 212 NLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIGKLQELYYLDLSH 271
           NL R E  KL   ++DG +P        L  L+L +N L+ S+P     L  L  LD+S 
Sbjct: 61  NLDRCELTKL---QVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109

Query: 272 NFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSVRKVPHLD--VLGNNLEGEIPSTSAN 329
           N +    L  L  +  +  + L  N L    P  +   P L+   L NN   E+P+   N
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169

Query: 330 G 330
           G
Sbjct: 170 G 170


>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
           Rbc36 In Complex With H-Trisaccharide
          Length = 229

 Score = 36.6 bits (83), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 10/129 (7%)

Query: 80  QVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSL-GHLTQLTTLNMRSNLIN 138
           Q+L L  N+I    P  F  L  LK L L  N+L G +P  +   LTQLT L++ +N + 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 139 A-------SLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQ 191
                    LV+L  L +  N LT  +P  +  L  +  L L +N+L      +   L+ 
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160

Query: 192 LNTLNMYSN 200
           L    ++ N
Sbjct: 161 LTHAYLFGN 169



 Score = 35.8 bits (81), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 7/123 (5%)

Query: 34  LHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEI-GNLNFLQVLDLSGNEIRGS 92
           L+L  N +    P     L  L  L + SN +  ++P+ +  +L  L VLDL  N++   
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVL 103

Query: 93  IPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINA----SLVNLTSLS 148
             + F  L  LK L +  NKL   +P  +  LT LT L +  N + +    +   L+SL+
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162

Query: 149 LHY 151
             Y
Sbjct: 163 HAY 165



 Score = 35.0 bits (79), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 3/120 (2%)

Query: 10  LDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIP-STLGHLTQLTTLAIASNHINVS 68
           L L DN +    P     L  L+ L+L SN L G +P      LTQLT L + +N + V 
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVL 103

Query: 69  IPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLT 128
                  L  L+ L +  N++   +P     L  L  L L QN+L      +   L+ LT
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162



 Score = 30.0 bits (66), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 140 SLVNLTSLSLHYNNLTGPIP-STLGHLNRIRILDLSENKLVGPIPSSV-GHLTQLNTLNM 197
           SL+NL  L L  N L G +P      L ++ +LDL  N+L   +PS+V   L  L  L M
Sbjct: 62  SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFM 119

Query: 198 YSNQINGSIPLEIGNLKRVEAVKLYDNKL 226
             N++   +P  I  L  +  + L  N+L
Sbjct: 120 CCNKLT-ELPRGIERLTHLTHLALDQNQL 147


>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
 pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
          Length = 603

 Score = 36.6 bits (83), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 107/283 (37%), Gaps = 64/283 (22%)

Query: 7   LVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSL-------VGNIPS------------ 47
           L  LDL+  +L G +P  +  L+ L+ L LS N           N PS            
Sbjct: 277 LQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKK 335

Query: 48  ------TLGHLTQLTTLAIASNHINVS--IPLEIGNLNFLQVLDLSGNEIRGSIPSTFGH 99
                  L  L  L TL ++ N I  S    L++ NL+ LQ L+LS NE  G     F  
Sbjct: 336 LHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKE 395

Query: 100 LKRLKSLDLSQNKLVGPIPSS-------------------------LGHLTQLTTLNMRS 134
             +L+ LDL+  +L    P S                         L  L  L  LN++ 
Sbjct: 396 CPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKG 455

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLG----------HLNRIRILDLSENKLVGPIPS 184
           N      +  T+L     +L   I S+ G           L ++  +DLS N L      
Sbjct: 456 NHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSID 515

Query: 185 SVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDNKLD 227
           S+ HL  +  LN+ +N IN   P  +  L +   + L  N LD
Sbjct: 516 SLSHLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHNPLD 557


>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3
 pdb|3G33|C Chain C, Crystal Structure Of Cdk4CYCLIN D3
          Length = 308

 Score = 36.6 bits (83), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 402 ATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHC---XXXXXXXXXXXFRNKA--R 455
           AT  +     IG G YG+VY+AR P SG  VALK +                 R  A  R
Sbjct: 7   ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLR 66

Query: 456 LLSQIRHRNIVKLYGFC 472
            L    H N+V+L   C
Sbjct: 67  RLEAFEHPNVVRLMDVC 83


>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
 pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
          Length = 281

 Score = 36.2 bits (82), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 75/166 (45%), Gaps = 14/166 (8%)

Query: 21  IPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEI-GNLNFL 79
           +PP L + + +  LHLS N L     +TL   T+LT L +    +     L++ G L  L
Sbjct: 26  LPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK---LQVDGTLPVL 80

Query: 80  QVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINA 139
             LDLS N+++ S+P     L  L  LD+S N+L      +L  L +L  L ++ N +  
Sbjct: 81  GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 139

Query: 140 -------SLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKL 178
                      L  LSL  NNLT      L  L  +  L L EN L
Sbjct: 140 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 185



 Score = 29.3 bits (64), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 68/153 (44%), Gaps = 12/153 (7%)

Query: 10  LDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSI 69
           L LS+N L+ +   TL   ++L  L+L    L        G L  L TL ++ N +  S+
Sbjct: 37  LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ-SL 93

Query: 70  PLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTT 129
           PL    L  L VLD+S N +          L  L+ L L  N+L    P  L    +L  
Sbjct: 94  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 153

Query: 130 LNMRSN--------LINASLVNLTSLSLHYNNL 154
           L++ +N        L+N  L NL +L L  N+L
Sbjct: 154 LSLANNNLTELPAGLLNG-LENLDTLLLQENSL 185



 Score = 28.5 bits (62), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 13/121 (10%)

Query: 212 NLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIGKLQELYYLDLSH 271
           NL R E  KL   ++DG +P        L  L+L +N L+ S+P     L  L  LD+S 
Sbjct: 62  NLDRCELTKL---QVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 110

Query: 272 NFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSVRKVPHLD--VLGNNLEGEIPSTSAN 329
           N +    L  L  +  +  + L  N L    P  +   P L+   L NN   E+P+   N
Sbjct: 111 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 170

Query: 330 G 330
           G
Sbjct: 171 G 171


>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
           Antibody
 pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
           Antibody
          Length = 286

 Score = 36.2 bits (82), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 51/130 (39%), Gaps = 1/130 (0%)

Query: 7   LVHLDLSDNYLWGYIPPTLGR-LSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHI 65
           L  LDLSDN     + PT  R L  L  LHL    L    P     L  L  L +  N++
Sbjct: 81  LEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNL 140

Query: 66  NVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLT 125
                    +L  L  L L GN I       F  L  L  L L QN +    P +   L 
Sbjct: 141 QALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLG 200

Query: 126 QLTTLNMRSN 135
           +L TL + +N
Sbjct: 201 RLMTLYLFAN 210



 Score = 32.7 bits (73), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 12/203 (5%)

Query: 80  QVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSN---- 135
           Q + L GN I     ++F   + L  L L  N L G   ++   LT L  L++  N    
Sbjct: 34  QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93

Query: 136 LINAS----LVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQ 191
           +++ +    L +L +L L    L    P     L  ++ L L +N L     ++   L  
Sbjct: 94  VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGN 153

Query: 192 LNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELEL-GNNLL 250
           L  L ++ N+I          L  ++ + L+ N +    P    +  +LM L L  NNL 
Sbjct: 154 LTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL- 212

Query: 251 RGSIPSEI-GKLQELYYLDLSHN 272
              +P+E+   L+ L YL L+ N
Sbjct: 213 -SMLPAEVLVPLRSLQYLRLNDN 234


>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
 pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
 pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
 pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
          Length = 307

 Score = 36.2 bits (82), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXX-XXXFRNKARLLSQIRHRNIVKLYG 470
           +G GG+G VY+  + +   VA+KKL              F  + +++++ +H N+V+L G
Sbjct: 39  MGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLG 97

Query: 471 FCLHRKCMFLIY 482
           F      + L+Y
Sbjct: 98  FSSDGDDLCLVY 109


>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
 pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
 pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
 pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
          Length = 307

 Score = 36.2 bits (82), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXX-XXXFRNKARLLSQIRHRNIVKLYG 470
           +G GG+G VY+  + +   VA+KKL              F  + +++++ +H N+V+L G
Sbjct: 39  MGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLG 97

Query: 471 FCLHRKCMFLIY 482
           F      + L+Y
Sbjct: 98  FSSDGDDLCLVY 109


>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
          Length = 487

 Score = 36.2 bits (82), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 28/204 (13%)

Query: 6   NLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHI 65
           N+  LDLS N L       L   +KLE L+LSSN L   +   L  L+ L TL + +N++
Sbjct: 35  NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92

Query: 66  NVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLT 125
                L +G    ++ L  + N I   +  + G  K  K++ L+ NK+        G  +
Sbjct: 93  Q---ELLVG--PSIETLHAANNNI-SRVSCSRGQGK--KNIYLANNKITMLRDLDEGCRS 144

Query: 126 QLTTLNMRSNLIN--------ASLVNLTSLSLHYN---NLTGPIPSTLGHLNRIRILDLS 174
           ++  L+++ N I+        AS   L  L+L YN   ++ G +        +++ LDLS
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-----FAKLKTLDLS 199

Query: 175 ENKL--VGPIPSSVGHLTQLNTLN 196
            NKL  +GP   S   +T ++  N
Sbjct: 200 SNKLAFMGPEFQSAAGVTWISLRN 223



 Score = 32.0 bits (71), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 100/245 (40%), Gaps = 58/245 (23%)

Query: 75  NLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRS 134
           N N  ++  ++ + ++ ++ S       +K LDLS N L     + L   T+L  LN+ S
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 135 NLINASLVNLTSLS----LHYNN------LTGPIPSTLGHLNRIRILDLSENKLVGPIPS 184
           N++  +L +L SLS    L  NN      L GP   TL           + N  +  +  
Sbjct: 68  NVLYETL-DLESLSTLRTLDLNNNYVQELLVGPSIETLH----------AANNNISRVSC 116

Query: 185 SVGHLTQLNTLNMY--SNQINGSIPLEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLME 242
           S G        N+Y  +N+I     L+ G   RV+ + L  N++D     EL   S  +E
Sbjct: 117 SRGQ----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 243 LELGNNLLRGSIPSEIGKLQELYYLDLSHNFI---NGKILSELGAIPSIDTVDLSMNNLS 299
                                  +L+L +NFI    G+++        + T+DLS N L+
Sbjct: 173 -----------------------HLNLQYNFIYDVKGQVV-----FAKLKTLDLSSNKLA 204

Query: 300 GSIPK 304
              P+
Sbjct: 205 FMGPE 209


>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
 pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
 pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
 pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
 pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
           Staurosporine
 pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
           Staurosporine
 pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
           Staurosporine
 pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
           Staurosporine
 pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
           Amppnp
 pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
           Amppnp
 pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
           Amppnp
 pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
           Amppnp
          Length = 301

 Score = 36.2 bits (82), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXX-XXXFRNKARLLSQIRHRNIVKLYG 470
           +G GG+G VY+  + +   VA+KKL              F  + +++++ +H N+V+L G
Sbjct: 33  MGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLG 91

Query: 471 FCLHRKCMFLIY 482
           F      + L+Y
Sbjct: 92  FSSDGDDLCLVY 103


>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
           Monocytogenes Str. 4b F2365 At 1.91 A Resolution
 pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
           Monocytogenes Str. 4b F2365 At 1.91 A Resolution
          Length = 347

 Score = 35.8 bits (81), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 6/111 (5%)

Query: 25  LGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDL 84
           +   ++L +L + +N +    P  L +L+QLT L I +N I  S    + +L  L+ L++
Sbjct: 217 VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI--SDINAVKDLTKLKXLNV 272

Query: 85  SGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSN 135
             N+I  S  S   +L +L SL L+ N+L       +G LT LTTL +  N
Sbjct: 273 GSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQN 321



 Score = 32.3 bits (72), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 117/256 (45%), Gaps = 20/256 (7%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAI 60
           +  L NL  L L+++ +    P  L  L+K  +L+L +N  + ++ S L + T L  L +
Sbjct: 106 LQNLTNLRELYLNEDNISDISP--LANLTKXYSLNLGANHNLSDL-SPLSNXTGLNYLTV 162

Query: 61  ASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSS 120
             + +    P  I NL  L  L L+ N+I    P     L  L       N++    P  
Sbjct: 163 TESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-- 216

Query: 121 LGHLTQLTTLNMRSNLIN-----ASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSE 175
           + + T+L +L + +N I      A+L  LT L +  N ++    + +  L +++ L++  
Sbjct: 217 VANXTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKXLNVGS 274

Query: 176 NKLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDNKLDGPIPPELM 235
           N++     S + +L+QLN+L + +NQ+       IG L  +  + L  N +    P  L 
Sbjct: 275 NQISDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP--LA 330

Query: 236 NCSKLMELELGNNLLR 251
           + SK    +  N +++
Sbjct: 331 SLSKXDSADFANQVIK 346


>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
           Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
           2.6 Angstrom Resolution
          Length = 288

 Score = 35.8 bits (81), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 75/166 (45%), Gaps = 14/166 (8%)

Query: 21  IPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEI-GNLNFL 79
           +PP L + + +  LHLS N L     +TL   T+LT L +    +     L++ G L  L
Sbjct: 25  LPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELT---KLQVDGTLPVL 79

Query: 80  QVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINA 139
             LDLS N+++ S+P     L  L  LD+S N+L      +L  L +L  L ++ N +  
Sbjct: 80  GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138

Query: 140 -------SLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKL 178
                      L  LSL  N+LT      L  L  +  L L EN L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184



 Score = 29.3 bits (64), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 68/153 (44%), Gaps = 12/153 (7%)

Query: 10  LDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSI 69
           L LS+N L+ +   TL   ++L  L+L    L        G L  L TL ++ N +  S+
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ-SL 92

Query: 70  PLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTT 129
           PL    L  L VLD+S N +          L  L+ L L  N+L    P  L    +L  
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152

Query: 130 LNMRSN--------LINASLVNLTSLSLHYNNL 154
           L++ +N        L+N  L NL +L L  N+L
Sbjct: 153 LSLANNDLTELPAGLLNG-LENLDTLLLQENSL 184



 Score = 28.5 bits (62), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 13/121 (10%)

Query: 212 NLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIGKLQELYYLDLSH 271
           NL R E  KL   ++DG +P        L  L+L +N L+ S+P     L  L  LD+S 
Sbjct: 61  NLDRCELTKL---QVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109

Query: 272 NFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSVRKVPHLD--VLGNNLEGEIPSTSAN 329
           N +    L  L  +  +  + L  N L    P  +   P L+   L NN   E+P+   N
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLN 169

Query: 330 G 330
           G
Sbjct: 170 G 170


>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
           Binding Of A Tri-acylated Lipopeptide
 pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
           Binding Of A Tri-Acylated Lipopeptide
          Length = 549

 Score = 35.8 bits (81), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 147/350 (42%), Gaps = 57/350 (16%)

Query: 4   LRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLG------HLTQLTT 57
           L +L HLDLSDN+L        G LS L+ L+     L+GN   TLG      +LT L T
Sbjct: 73  LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN-----LMGNPYQTLGVTSLFPNLTNLQT 127

Query: 58  LAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTF--GHLKRLK-----SLDLSQ 110
           L I     NV    EI  ++F  +  L+  EI+      +    LK ++     +L LS+
Sbjct: 128 LRIG----NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 111 N----KLVGPIPSSLGHL----TQLTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPSTL 162
           +    ++   I SS+ +L    T L         ++     +  L+   + LT    + L
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 163 GHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLY 222
             L R  IL+LSE +      + +G            N     +  E+G ++ V   +L+
Sbjct: 244 LKLLRY-ILELSEVEFDDCTLNGLGDF----------NPSESDVVSELGKVETVTIRRLH 292

Query: 223 DNKL----DGPIPPELMNCSKLMELELGNNLLRGSIPSEIGK-LQELYYLDLSHNFINGK 277
             +     D      L+   K + +E     L   +P    + L+ L +LDLS N +  +
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFL---VPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 278 ILSE---LGAIPSIDTVDLSMNNL-----SGSIPKSVRKVPHLDVLGNNL 319
            L      GA PS+ T+ LS N+L     +G I  +++ +  LD+  N  
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399



 Score = 32.7 bits (73), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 14/95 (14%)

Query: 93  IPSTFG-HLKRLKSLDLSQNKLVGPI---PSSLGHLTQLTTLNMRSNLINA--------- 139
           +P +F  HLK L+ LDLS+N +V       +  G    L TL +  N + +         
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384

Query: 140 SLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLS 174
           +L NLTSL +  N    P+P +     ++R L+LS
Sbjct: 385 TLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLS 418



 Score = 30.8 bits (68), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 78/190 (41%), Gaps = 41/190 (21%)

Query: 92  SIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHY 151
           SIPS  G    +KSLDLS NK+     + +GH       N++  ++ +S +         
Sbjct: 19  SIPS--GLTAAMKSLDLSFNKI-----TYIGHGDLRACANLQVLILKSSRI--------- 62

Query: 152 NNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQ-----INGSI 206
           N + G    +LG L     LDLS+N L     S  G L+ L  LN+  N      +    
Sbjct: 63  NTIEGDAFYSLGSLEH---LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 207 P-------LEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIG 259
           P       L IGN++    ++  D              + L ELE+    LR      + 
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRID----------FAGLTSLNELEIKALSLRNYQSQSLK 169

Query: 260 KLQELYYLDL 269
            ++++++L L
Sbjct: 170 SIRDIHHLTL 179


>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
           Kinase
          Length = 495

 Score = 35.4 bits (80), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 405 DFHIKYCIGTGGYGSVYRARLPSGKV-VALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           D  +K+ +G G YG VY        + VA+K L             F  +A ++ +I+H 
Sbjct: 221 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL----KEDTMEVEEFLKEAAVMKEIKHP 276

Query: 464 NIVKLYGFCLHRKCMFLI 481
           N+V+L G C      ++I
Sbjct: 277 NLVQLLGVCTREPPFYII 294


>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7
 pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7
          Length = 310

 Score = 35.4 bits (80), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 405 DFHIKYCIGTGGYGSVYRAR-LPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           +F I+  IG G +  VYRA  L  G  VALKK+                +  LL Q+ H 
Sbjct: 33  NFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHP 92

Query: 464 NIVKLYG 470
           N++K Y 
Sbjct: 93  NVIKYYA 99


>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
           Receptors B61
          Length = 177

 Score = 35.4 bits (80), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 17/124 (13%)

Query: 117 IPSSLGHLTQLTTLNMRSNLINA-------SLVNLTSLSLHYNNLTGPIPSTLGHLNRIR 169
           IPSS       T L + SN + +        L  LT LSL  N +          L ++ 
Sbjct: 26  IPSSA------TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT 79

Query: 170 ILDLSENKLVGPIPSSV-GHLTQLNTLNMYSNQINGSIPLEIGN-LKRVEAVKLYDNKLD 227
           IL L ENKL   +P+ V   LTQL  L + +NQ+  S+P  I + L  ++ + L+ N  D
Sbjct: 80  ILYLHENKLQS-LPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 137

Query: 228 GPIP 231
              P
Sbjct: 138 CSCP 141



 Score = 28.5 bits (62), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 10/120 (8%)

Query: 56  TTLAIASNHINVSIPLEI-GNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLV 114
           T L + SN +  S+P  +   L  L  L LS N+I+      F  L +L  L L +NKL 
Sbjct: 31  TRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89

Query: 115 GPIPSSLGHLTQLTTLNMRSNLINA-------SLVNLTSLSLHYNNLTGPIPSTLGHLNR 167
                    LTQL  L + +N + +        L +L  + LH N      P  + +L+R
Sbjct: 90  SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR-IDYLSR 148


>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
           Forms Of The C-Abl Tyrosine Kinase
          Length = 495

 Score = 35.4 bits (80), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 405 DFHIKYCIGTGGYGSVYRARLPSGKV-VALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           D  +K+ +G G YG VY        + VA+K L             F  +A ++ +I+H 
Sbjct: 218 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL----KEDTMEVEEFLKEAAVMKEIKHP 273

Query: 464 NIVKLYGFCLHRKCMFLI 481
           N+V+L G C      ++I
Sbjct: 274 NLVQLLGVCTREPPFYII 291


>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
 pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
          Length = 317

 Score = 35.4 bits (80), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 28/204 (13%)

Query: 6   NLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHI 65
           N+  LDLS N L       L   +KLE L+LSSN L   +   L  L+ L TL + +N++
Sbjct: 35  NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92

Query: 66  NVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLT 125
                L +G    ++ L  + N I   +  + G  K  K++ L+ NK+        G  +
Sbjct: 93  Q---ELLVG--PSIETLHAANNNI-SRVSCSRGQGK--KNIYLANNKITMLRDLDEGCRS 144

Query: 126 QLTTLNMRSNLIN--------ASLVNLTSLSLHYN---NLTGPIPSTLGHLNRIRILDLS 174
           ++  L+++ N I+        AS   L  L+L YN   ++ G +        +++ LDLS
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-----FAKLKTLDLS 199

Query: 175 ENKL--VGPIPSSVGHLTQLNTLN 196
            NKL  +GP   S   +T ++  N
Sbjct: 200 SNKLAFMGPEFQSAAGVTWISLRN 223



 Score = 32.3 bits (72), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 112/262 (42%), Gaps = 41/262 (15%)

Query: 75  NLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRS 134
           N N  ++  ++ + ++ ++ S       +K LDLS N L     + L   T+L  LN+ S
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 135 NLINASLVNLTSLS----LHYNN------LTGPIPSTLGHLNRIRILDLSENKLVGPIPS 184
           N++  +L +L SLS    L  NN      L GP   TL           + N  +  +  
Sbjct: 68  NVLYETL-DLESLSTLRTLDLNNNYVQELLVGPSIETLH----------AANNNISRVSC 116

Query: 185 SVGHLTQLNTLNMY--SNQINGSIPLEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLME 242
           S G   +    N+Y  +N+I     L+ G   RV+ + L  N++D     EL   S  +E
Sbjct: 117 SRGQGKK----NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 243 -LELGNNLL---RGSIPSEIGKLQELYYLDLSHNFINGKILSELGAIPSIDTVDLSMNNL 298
            L L  N +   +G +        +L  LDLS N +   +  E  +   +  + L  N L
Sbjct: 173 HLNLQYNFIYDVKGQVV-----FAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKL 226

Query: 299 SGSIPKSVR---KVPHLDVLGN 317
              I K++R    + H D+ GN
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGN 247


>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
 pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
           Lipoteichoic Acid Complex
 pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
          Length = 580

 Score = 35.4 bits (80), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 147/350 (42%), Gaps = 57/350 (16%)

Query: 4   LRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLG------HLTQLTT 57
           L +L HLDLSDN+L        G LS L+ L+     L+GN   TLG      +LT L T
Sbjct: 99  LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN-----LMGNPYQTLGVTSLFPNLTNLQT 153

Query: 58  LAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTF--GHLKRLK-----SLDLSQ 110
           L I     NV    EI  ++F  +  L+  EI+      +    LK ++     +L LS+
Sbjct: 154 LRIG----NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 209

Query: 111 N----KLVGPIPSSLGHL----TQLTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPSTL 162
           +    ++   I SS+ +L    T L         ++     +  L+   + LT    + L
Sbjct: 210 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 269

Query: 163 GHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLY 222
             L R  IL+LSE +      + +G            N     +  E+G ++ V   +L+
Sbjct: 270 LKLLRY-ILELSEVEFDDCTLNGLGDF----------NPSESDVVSELGKVETVTIRRLH 318

Query: 223 DNKL----DGPIPPELMNCSKLMELELGNNLLRGSIPSEIGK-LQELYYLDLSHNFINGK 277
             +     D      L+   K + +E     L   +P    + L+ L +LDLS N +  +
Sbjct: 319 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFL---VPCSFSQHLKSLEFLDLSENLMVEE 375

Query: 278 ILSE---LGAIPSIDTVDLSMNNL-----SGSIPKSVRKVPHLDVLGNNL 319
            L      GA PS+ T+ LS N+L     +G I  +++ +  LD+  N  
Sbjct: 376 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 425



 Score = 32.7 bits (73), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 14/95 (14%)

Query: 93  IPSTFG-HLKRLKSLDLSQNKLVGPI---PSSLGHLTQLTTLNMRSNLINA--------- 139
           +P +F  HLK L+ LDLS+N +V       +  G    L TL +  N + +         
Sbjct: 351 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 410

Query: 140 SLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLS 174
           +L NLTSL +  N    P+P +     ++R L+LS
Sbjct: 411 TLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLS 444



 Score = 30.8 bits (68), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 78/190 (41%), Gaps = 41/190 (21%)

Query: 92  SIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHY 151
           SIPS  G    +KSLDLS NK+     + +GH       N++  ++ +S +         
Sbjct: 45  SIPS--GLTAAMKSLDLSFNKI-----TYIGHGDLRACANLQVLILKSSRI--------- 88

Query: 152 NNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQ-----INGSI 206
           N + G    +LG L     LDLS+N L     S  G L+ L  LN+  N      +    
Sbjct: 89  NTIEGDAFYSLGSLEH---LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 145

Query: 207 P-------LEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIG 259
           P       L IGN++    ++  D              + L ELE+    LR      + 
Sbjct: 146 PNLTNLQTLRIGNVETFSEIRRID----------FAGLTSLNELEIKALSLRNYQSQSLK 195

Query: 260 KLQELYYLDL 269
            ++++++L L
Sbjct: 196 SIRDIHHLTL 205


>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7
 pdb|2B9I|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Msg5
 pdb|2B9J|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Far1
 pdb|2F49|A Chain A, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
 pdb|2F49|B Chain B, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
 pdb|2FA2|A Chain A, Crystal Structure Of Fus3 Without A Peptide From Ste5
 pdb|2FA2|B Chain B, Crystal Structure Of Fus3 Without A Peptide From Ste5
          Length = 353

 Score = 35.4 bits (80), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 403 TEDFHIKYCIGTGGYGSVYRA-RLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIR 461
           + DF +K  +G G YG V  A   P+G++VA+KK+                + ++L   +
Sbjct: 10  SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTL--REIKILKHFK 67

Query: 462 HRNIVKLY 469
           H NI+ ++
Sbjct: 68  HENIITIF 75


>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
           Kinase
 pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
           Kinase
          Length = 537

 Score = 35.4 bits (80), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 405 DFHIKYCIGTGGYGSVYRARLPSGKV-VALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           D  +K+ +G G YG VY        + VA+K L             F  +A ++ +I+H 
Sbjct: 260 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL----KEDTMEVEEFLKEAAVMKEIKHP 315

Query: 464 NIVKLYGFCLHRKCMFLI 481
           N+V+L G C      ++I
Sbjct: 316 NLVQLLGVCTREPPFYII 333


>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182
          Length = 353

 Score = 35.4 bits (80), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 403 TEDFHIKYCIGTGGYGSVYRA-RLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIR 461
           + DF +K  +G G YG V  A   P+G++VA+KK+                + ++L   +
Sbjct: 10  SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTL--REIKILKHFK 67

Query: 462 HRNIVKLY 469
           H NI+ ++
Sbjct: 68  HENIITIF 75


>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3
          Length = 353

 Score = 35.0 bits (79), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 403 TEDFHIKYCIGTGGYGSVYRA-RLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIR 461
           + DF +K  +G G YG V  A   P+G++VA+KK+                + ++L   +
Sbjct: 10  SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTL--REIKILKHFK 67

Query: 462 HRNIVKLY 469
           H NI+ ++
Sbjct: 68  HENIITIF 75


>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
           With Inno-406
 pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
           With Inno-406
          Length = 293

 Score = 35.0 bits (79), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 405 DFHIKYCIGTGGYGSVYRARLPSGKV-VALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           D  +K+ +G G YG VY        + VA+K L             F  +A ++ +I+H 
Sbjct: 19  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK----EDTMEVEEFLKEAAVMKEIKHP 74

Query: 464 NIVKLYGFCLHRKCMFLI 481
           N+V+L G C      ++I
Sbjct: 75  NLVQLLGVCTREPPFYII 92


>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
           Abl Mutant In Complex With The Aurora Kinase Inhibitor
           Vx-680
          Length = 287

 Score = 35.0 bits (79), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 405 DFHIKYCIGTGGYGSVYRARLPSGKV-VALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           D  +K+ +G G YG VY        + VA+K L             F  +A ++ +I+H 
Sbjct: 15  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK----EDTMEVEEFLKEAAVMKEIKHP 70

Query: 464 NIVKLYGFCLHRKCMFLI 481
           N+V+L G C      ++I
Sbjct: 71  NLVQLLGVCTREPPFYII 88


>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
           The Inhibitor Pha-739358
 pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
           The Inhibitor Pha-739358
          Length = 286

 Score = 35.0 bits (79), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 405 DFHIKYCIGTGGYGSVYRARLPSGKV-VALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           D  +K+ +G G YG VY        + VA+K L             F  +A ++ +I+H 
Sbjct: 15  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK----EDTMEVEEFLKEAAVMKEIKHP 70

Query: 464 NIVKLYGFCLHRKCMFLI 481
           N+V+L G C      ++I
Sbjct: 71  NLVQLLGVCTREPPFYII 88


>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
           Small Molecule Inhibitor
 pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
           Small Molecule Inhibitor
 pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
           With Sti-571.
 pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
           With Sti-571.
 pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
           With Pd173955
 pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
           With Pd173955
 pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
           Kinase
 pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
           Kinase
 pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
 pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
 pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
 pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
           I Myristate Pocket
 pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
           I Myristate Pocket
 pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
           In The Myristate Site
 pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
           In The Myristate Site
 pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
           In The Myristate Site
 pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
           In The Myristate Site
          Length = 293

 Score = 35.0 bits (79), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 405 DFHIKYCIGTGGYGSVYRARLPSGKV-VALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           D  +K+ +G G YG VY        + VA+K L             F  +A ++ +I+H 
Sbjct: 19  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK----EDTMEVEEFLKEAAVMKEIKHP 74

Query: 464 NIVKLYGFCLHRKCMFLI 481
           N+V+L G C      ++I
Sbjct: 75  NLVQLLGVCTREPPFYII 92


>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
           Activated Abl Kinase Domain
 pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
           Activated Abl Kinase Domain
          Length = 278

 Score = 35.0 bits (79), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 405 DFHIKYCIGTGGYGSVYRARLPSGKV-VALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           D  +K+ +G G YG VY        + VA+K L             F  +A ++ +I+H 
Sbjct: 19  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK----EDTMEVEEFLKEAAVMKEIKHP 74

Query: 464 NIVKLYGFCLHRKCMFLI 481
           N+V+L G C      ++I
Sbjct: 75  NLVQLLGVCTREPPFYII 92


>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
           Kinase Domain
 pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
           Kinase Domain
 pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
           Kinase Domain
 pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
           Kinase Domain
 pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
           Kinase Domain
 pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
           Kinase Domain
          Length = 287

 Score = 35.0 bits (79), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 405 DFHIKYCIGTGGYGSVYRARLPSGKV-VALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           D  +K+ +G G YG VY        + VA+K L             F  +A ++ +I+H 
Sbjct: 16  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK----EDTMEVEEFLKEAAVMKEIKHP 71

Query: 464 NIVKLYGFCLHRKCMFLI 481
           N+V+L G C      ++I
Sbjct: 72  NLVQLLGVCTREPPFYII 89


>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
           With Small Molecule Fragment
 pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
           With Small Molecule Fragment
          Length = 277

 Score = 35.0 bits (79), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 405 DFHIKYCIGTGGYGSVYRARLPSGKV-VALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           D  +K+ +G G YG VY        + VA+K L             F  +A ++ +I+H 
Sbjct: 12  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK----EDTMEVEEFLKEAAVMKEIKHP 67

Query: 464 NIVKLYGFCLHRKCMFLI 481
           N+V+L G C      ++I
Sbjct: 68  NLVQLLGVCTREPPFYII 85


>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
           With A Dfg- Out Inhibitor Ap24589
 pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
           With A Dfg- Out Inhibitor Ap24589
          Length = 284

 Score = 35.0 bits (79), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 405 DFHIKYCIGTGGYGSVYRARLPSGKV-VALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           D  +K+ +G G YG VY        + VA+K L             F  +A ++ +I+H 
Sbjct: 14  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK----EDTMEVEEFLKEAAVMKEIKHP 69

Query: 464 NIVKLYGFCLHRKCMFLI 481
           N+V+L G C      ++I
Sbjct: 70  NLVQLLGVCTREPPFYII 87


>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
           2913 Ectodomain
 pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
           2913 Ectodomain
 pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
           2913 Ectodomain
 pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
           2913 Ectodomain
          Length = 174

 Score = 35.0 bits (79), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 147 LSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSV-GHLTQLNTLNMYSNQINGS 205
           L L+ N +T   P    HL  ++ L  + NKL   IP+ V   LTQL  L++  N +  S
Sbjct: 38  LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLK-S 95

Query: 206 IPL-EIGNLKRVEAVKLYDNKLD 227
           IP     NLK +  + LY+N  D
Sbjct: 96  IPRGAFDNLKSLTHIYLYNNPWD 118



 Score = 34.3 bits (77), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 80  QVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINA 139
           Q L L+ N+I    P  F HL  L+ L  + NKL          LTQLT L++  N + +
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95

Query: 140 ----SLVNLTSLSLHY 151
               +  NL SL+  Y
Sbjct: 96  IPRGAFDNLKSLTHIY 111



 Score = 28.9 bits (63), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 10 LDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSI 69
          L L++N +    P     L  L+ L+ +SN L          LTQLT L +  NH+  SI
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SI 96

Query: 70 P 70
          P
Sbjct: 97 P 97


>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
           Mutant In Complex With Dcc-2036
 pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
           Mutant In Complex With Dcc-2036
          Length = 277

 Score = 35.0 bits (79), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 405 DFHIKYCIGTGGYGSVYRARLPSGKV-VALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           D  +K+ +G G YG VY        + VA+K L             F  +A ++ +I+H 
Sbjct: 19  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK----EDTMEVEEFLKEAAVMKEIKHP 74

Query: 464 NIVKLYGFCLHRKCMFLI 481
           N+V+L G C      ++I
Sbjct: 75  NLVQLLGVCTREPPFYII 92


>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
           Complex With Dcc- 2036
 pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
           Complex With Dcc- 2036
 pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
           Complex With Dp- 987
          Length = 277

 Score = 35.0 bits (79), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 405 DFHIKYCIGTGGYGSVYRARLPSGKV-VALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           D  +K+ +G G YG VY        + VA+K L             F  +A ++ +I+H 
Sbjct: 19  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK----EDTMEVEEFLKEAAVMKEIKHP 74

Query: 464 NIVKLYGFCLHRKCMFLI 481
           N+V+L G C      ++I
Sbjct: 75  NLVQLLGVCTREPPFYII 92


>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
           Dfg-Out Inhibitor Ap24534
          Length = 284

 Score = 35.0 bits (79), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 405 DFHIKYCIGTGGYGSVYRARLPSGKV-VALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           D  +K+ +G G YG VY        + VA+K L             F  +A ++ +I+H 
Sbjct: 14  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK----EDTMEVEEFLKEAAVMKEIKHP 69

Query: 464 NIVKLYGFCLHRKCMFLI 481
           N+V+L G C      ++I
Sbjct: 70  NLVQLLGVCTREPPFYII 87


>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
           With Small Molecule Fragment
 pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
           With Small Molecule Fragment
          Length = 293

 Score = 34.7 bits (78), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 405 DFHIKYCIGTGGYGSVYRARLPSGKV-VALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           D  +K+ +G G YG VY        + VA+K L             F  +A ++ +I+H 
Sbjct: 12  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK----EDTMEVEEFLKEAAVMKEIKHP 67

Query: 464 NIVKLYGFCLHRKCMFLI 481
           N+V+L G C      ++I
Sbjct: 68  NLVQLLGVCTREPPFYII 85


>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
 pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
 pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
 pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
 pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
 pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
          Length = 277

 Score = 34.7 bits (78), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 405 DFHIKYCIGTGGYGSVYRARLPSGKV-VALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           D  +K+ +G G YG VY        + VA+K L             F  +A ++ +I+H 
Sbjct: 18  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK----EDTMEVEEFLKEAAVMKEIKHP 73

Query: 464 NIVKLYGFCLHRKCMFLI 481
           N+V+L G C      ++I
Sbjct: 74  NLVQLLGVCTREPPFYII 91


>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
           Catalytic Domain Complexed With Type Ii Inhibitor
 pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
           Catalytic Domain Complexed With Type Ii Inhibitor
          Length = 287

 Score = 34.7 bits (78), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 405 DFHIKYCIGTGGYGSVYRARLPSGKV-VALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           D  +K+ +G G YG VY        + VA+K L             F  +A ++ +I+H 
Sbjct: 16  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK----EDTMEVEEFLKEAAVMKEIKHP 71

Query: 464 NIVKLYGFCLHRKCMFLI 481
           N+V+L G C      ++I
Sbjct: 72  NLVQLLGVCTREPPFYII 89


>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
 pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
 pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
           Inhibitors Sharing A Common Vinyl Purine Template
 pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
           Inhibitors Sharing A Common Vinyl Purine Template
 pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
           Inhibitors Sharing A Common Vinyl Purine Template
 pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
           Inhibitors Sharing A Common Vinyl Purine Template
          Length = 288

 Score = 34.7 bits (78), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 405 DFHIKYCIGTGGYGSVYRARLPSGKV-VALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           D  +K+ +G G YG VY        + VA+K L             F  +A ++ +I+H 
Sbjct: 14  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK----EDTMEVEEFLKEAAVMKEIKHP 69

Query: 464 NIVKLYGFCLHRKCMFLI 481
           N+V+L G C      ++I
Sbjct: 70  NLVQLLGVCTREPPFYII 87


>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
           Small-Molecule C- Abl Kinase Activator That Binds To The
           Myristoyl Binding Site
 pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
           Small-Molecule C- Abl Kinase Activator That Binds To The
           Myristoyl Binding Site
          Length = 298

 Score = 34.7 bits (78), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 405 DFHIKYCIGTGGYGSVYRARLPSGKV-VALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           D  +K+ +G G YG VY        + VA+K L             F  +A ++ +I+H 
Sbjct: 27  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK----EDTMEVEEFLKEAAVMKEIKHP 82

Query: 464 NIVKLYGFCLHRKCMFLI 481
           N+V+L G C      ++I
Sbjct: 83  NLVQLLGVCTREPPFYII 100


>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
           Kinase Domain
 pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
           Kinase Domain
 pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
           Kinase Domain
 pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
           Kinase Domain
 pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
           Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
           Domain
 pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
           Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
           Domain
          Length = 287

 Score = 34.7 bits (78), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 405 DFHIKYCIGTGGYGSVYRARLPSGKV-VALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           D  +K+ +G G YG VY        + VA+K L             F  +A ++ +I+H 
Sbjct: 16  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK----EDTMEVEEFLKEAAVMKEIKHP 71

Query: 464 NIVKLYGFCLHRKCMFLI 481
           N+V+L G C      ++I
Sbjct: 72  NLVQLLGVCTREPPFYII 89


>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
           With Ppy-A
 pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
           Leukemi Potently Inhibits The T315i Mutant And Overcomes
           Mutation-B Resistance
 pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
           Leukemi Potently Inhibits The T315i Mutant And Overcomes
           Mutation-B Resistance
          Length = 288

 Score = 34.7 bits (78), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 405 DFHIKYCIGTGGYGSVYRARLPSGKV-VALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           D  +K+ +G G YG VY        + VA+K L             F  +A ++ +I+H 
Sbjct: 14  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK----EDTMEVEEFLKEAAVMKEIKHP 69

Query: 464 NIVKLYGFCLHRKCMFLI 481
           N+V+L G C      ++I
Sbjct: 70  NLVQLLGVCTREPPFYII 87


>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
 pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
 pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
 pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
          Length = 220

 Score = 34.7 bits (78), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 7/114 (6%)

Query: 97  FGHLKRLKSLDLSQNKLV----GPIPSSLGHLTQLTTLNMRSNL---INASLVNLTSLSL 149
           F  L +L+ ++ S NK+     G    + G    L T N   N+   +   L +L +L L
Sbjct: 53  FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112

Query: 150 HYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQIN 203
             N +T     +   L+ +R+L L +N++    P +   L  L+TLN+ +N  N
Sbjct: 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166


>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
 pdb|1H4L|B Chain B, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
          Length = 292

 Score = 34.7 bits (78), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 412 IGTGGYGSVYRAR-LPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYG 470
           IG G YG+V++A+   + ++VALK++              R    LL +++H+NIV+L+ 
Sbjct: 10  IGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREIC-LLKELKHKNIVRLHD 68

Query: 471 FCLHRKCMFLIY 482
                K + L++
Sbjct: 69  VLHSDKKLTLVF 80


>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
 pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
          Length = 193

 Score = 34.7 bits (78), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 4/107 (3%)

Query: 11  DLSDNYLWG----YIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHIN 66
           D+++ YL G     +P  L     L  + LS+N +      +  ++TQL TL ++ N + 
Sbjct: 32  DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91

Query: 67  VSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKL 113
              P     L  L++L L GN+I       F  L  L  L +  N L
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138



 Score = 33.9 bits (76), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 54  QLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKL 113
            +T L +  N   + +P E+ N   L ++DLS N I      +F ++ +L +L LS N+L
Sbjct: 32  DVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

Query: 114 VGPIPSSLGHLTQLTTLNMRSNLINA 139
               P +   L  L  L++  N I+ 
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGNDISV 116



 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 5/110 (4%)

Query: 143 NLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQI 202
           ++T L L  N  T  +P  L +   + ++DLS N++      S  ++TQL TL +  N++
Sbjct: 32  DVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

Query: 203 NGSIPLEIGNLKRVEAVKLYDNKLDGPIPPE--LMNCSKLMELELGNNLL 250
               P     LK +  + L+ N  D  + PE    + S L  L +G N L
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGN--DISVVPEGAFNDLSALSHLAIGANPL 138



 Score = 29.6 bits (65), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 4/101 (3%)

Query: 106 LDLSQNKLVGPIPSSLGHLTQLTTLNMR-SNLINASLVNLT---SLSLHYNNLTGPIPST 161
           LD +Q  LV    S+  HLT +   N R S L N S  N+T   +L L YN L    P T
Sbjct: 38  LDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRT 97

Query: 162 LGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQI 202
              L  +R+L L  N +      +   L+ L+ L + +N +
Sbjct: 98  FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138


>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
           Glivec)
 pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
           Glivec)
 pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
           Glivec)
 pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
           Glivec)
 pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
           Tetrahydrostaurosporine
 pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
           Tetrahydrostaurosporine
 pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
           Tetrahydrostaurosporine
          Length = 273

 Score = 34.7 bits (78), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 405 DFHIKYCIGTGGYGSVYRARLPSGKV-VALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           D  +K+ +G G YG VY        + VA+K L             F  +A ++ +I+H 
Sbjct: 14  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK----EDTMEVEEFLKEAAVMKEIKHP 69

Query: 464 NIVKLYGFCLHRKCMFLI 481
           N+V+L G C      ++I
Sbjct: 70  NLVQLLGVCTREPPFYII 87


>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In
           Complexed With Inhibitor
 pdb|1Q5K|B Chain B, Crystal Structure Of Glycogen Synthase Kinase 3 In
           Complexed With Inhibitor
 pdb|3I4B|A Chain A, Crystal Structure Of Gsk3b In Complex With A
           Pyrimidylpyrrole Inhibitor
 pdb|3I4B|B Chain B, Crystal Structure Of Gsk3b In Complex With A
           Pyrimidylpyrrole Inhibitor
 pdb|3L1S|A Chain A, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
           Efficient And Potent Inhibitors Of Gsk3
 pdb|3L1S|B Chain B, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
           Efficient And Potent Inhibitors Of Gsk3
          Length = 414

 Score = 34.7 bits (78), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 10/62 (16%)

Query: 412 IGTGGYGSVYRARL-PSGKVVALKKLHCXXXXXXXXXXXFRNKA-RLLSQIRHRNIVKLY 469
           IG G +G VY+A+L  SG++VA+KK+             F+N+  +++ ++ H NIV+L 
Sbjct: 56  IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 107

Query: 470 GF 471
            F
Sbjct: 108 YF 109


>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With
           3-Indolyl-4- Arylmaleimide Inhibitor
 pdb|1R0E|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With
           3-Indolyl-4- Arylmaleimide Inhibitor
          Length = 391

 Score = 34.3 bits (77), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 10/62 (16%)

Query: 412 IGTGGYGSVYRARL-PSGKVVALKKLHCXXXXXXXXXXXFRNKA-RLLSQIRHRNIVKLY 469
           IG G +G VY+A+L  SG++VA+KK+             F+N+  +++ ++ H NIV+L 
Sbjct: 33  IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 84

Query: 470 GF 471
            F
Sbjct: 85  YF 86


>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
           Frattide Peptide
 pdb|1GNG|B Chain B, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
           Frattide Peptide
          Length = 378

 Score = 34.3 bits (77), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 10/62 (16%)

Query: 412 IGTGGYGSVYRARL-PSGKVVALKKLHCXXXXXXXXXXXFRNKA-RLLSQIRHRNIVKLY 469
           IG G +G VY+A+L  SG++VA+KK+             F+N+  +++ ++ H NIV+L 
Sbjct: 47  IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 98

Query: 470 GF 471
            F
Sbjct: 99  YF 100


>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
           Roscovitine, Aloisine And Indirubin.
 pdb|1UNG|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
           Roscovitine, Aloisine And Indirubin.
 pdb|1UNH|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
           Roscovitine, Aloisine And Indirubin.
 pdb|1UNH|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
           Roscovitine, Aloisine And Indirubin.
 pdb|1UNL|A Chain A, Structural Mechanism For The Inhibition Of Cd5-P25 From
           The Roscovitine, Aloisine And Indirubin.
 pdb|1UNL|B Chain B, Structural Mechanism For The Inhibition Of Cd5-P25 From
           The Roscovitine, Aloisine And Indirubin.
 pdb|3O0G|A Chain A, Crystal Structure Of Cdk5:p25 In Complex With An Atp
           Analogue
 pdb|3O0G|B Chain B, Crystal Structure Of Cdk5:p25 In Complex With An Atp
           Analogue
          Length = 292

 Score = 34.3 bits (77), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 412 IGTGGYGSVYRAR-LPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYG 470
           IG G YG+V++A+   + ++VALK++              R    LL +++H+NIV+L+ 
Sbjct: 10  IGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREIC-LLKELKHKNIVRLHD 68

Query: 471 FCLHRKCMFLIY 482
                K + L++
Sbjct: 69  VLHSDKKLTLVF 80


>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
           (Gsk3b) In Complex With Inhibitor 142
 pdb|3SAY|B Chain B, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
           (Gsk3b) In Complex With Inhibitor 142
          Length = 430

 Score = 34.3 bits (77), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 10/62 (16%)

Query: 412 IGTGGYGSVYRARL-PSGKVVALKKLHCXXXXXXXXXXXFRNKA-RLLSQIRHRNIVKLY 469
           IG G +G VY+A+L  SG++VA+KK+             F+N+  +++ ++ H NIV+L 
Sbjct: 62  IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 113

Query: 470 GF 471
            F
Sbjct: 114 YF 115


>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
           Gsk-3 Inhibitors
 pdb|4AFJ|B Chain B, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
           Gsk-3 Inhibitors
          Length = 367

 Score = 34.3 bits (77), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 10/62 (16%)

Query: 412 IGTGGYGSVYRARL-PSGKVVALKKLHCXXXXXXXXXXXFRNKA-RLLSQIRHRNIVKLY 469
           IG G +G VY+A+L  SG++VA+KK+             F+N+  +++ ++ H NIV+L 
Sbjct: 36  IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 87

Query: 470 GF 471
            F
Sbjct: 88  YF 89


>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
           Benzoimidazol Inhibitor
          Length = 372

 Score = 34.3 bits (77), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 10/62 (16%)

Query: 412 IGTGGYGSVYRARL-PSGKVVALKKLHCXXXXXXXXXXXFRNKA-RLLSQIRHRNIVKLY 469
           IG G +G VY+A+L  SG++VA+KK+             F+N+  +++ ++ H NIV+L 
Sbjct: 41  IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 92

Query: 470 GF 471
            F
Sbjct: 93  YF 94


>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
 pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
          Length = 270

 Score = 34.3 bits (77), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 405 DFHIKYCIGTGGYGSVYRARLPSGKV-VALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           D  +K+ +G G YG VY        + VA+K L             F  +A ++ +I+H 
Sbjct: 14  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK----EDTMEVEEFLKEAAVMKEIKHP 69

Query: 464 NIVKLYGFCLHRKCMFLI 481
           N+V+L G C      ++I
Sbjct: 70  NLVQLLGVCTREPPFYII 87


>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
           Imidazopyridine Inhibitor
          Length = 382

 Score = 34.3 bits (77), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 10/62 (16%)

Query: 412 IGTGGYGSVYRARL-PSGKVVALKKLHCXXXXXXXXXXXFRNKA-RLLSQIRHRNIVKLY 469
           IG G +G VY+A+L  SG++VA+KK+             F+N+  +++ ++ H NIV+L 
Sbjct: 40  IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 91

Query: 470 GF 471
            F
Sbjct: 92  YF 93


>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
           (Indole)maleimide Pyridinophane Inhibitor
 pdb|2OW3|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
           (Indole)maleimide Pyridinophane Inhibitor
          Length = 352

 Score = 34.3 bits (77), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 10/62 (16%)

Query: 412 IGTGGYGSVYRARL-PSGKVVALKKLHCXXXXXXXXXXXFRNKA-RLLSQIRHRNIVKLY 469
           IG G +G VY+A+L  SG++VA+KK+             F+N+  +++ ++ H NIV+L 
Sbjct: 28  IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 79

Query: 470 GF 471
            F
Sbjct: 80  YF 81


>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
 pdb|1I09|B Chain B, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
 pdb|1J1B|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
           With Amppnp
 pdb|1J1B|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
           With Amppnp
 pdb|1J1C|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
           With Adp
 pdb|1J1C|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
           With Adp
 pdb|2JLD|A Chain A, Extremely Tight Binding Of Ruthenium Complex To Glycogen
           Synthase Kinase 3
 pdb|2JLD|B Chain B, Extremely Tight Binding Of Ruthenium Complex To Glycogen
           Synthase Kinase 3
 pdb|3M1S|A Chain A, Structure Of Ruthenium Half-Sandwich Complex Bound To
           Glycogen Synthase Kinase 3
 pdb|3M1S|B Chain B, Structure Of Ruthenium Half-Sandwich Complex Bound To
           Glycogen Synthase Kinase 3
 pdb|3PUP|A Chain A, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
           Complex With A Ruthenium Octasporine Ligand (Os1)
 pdb|3PUP|B Chain B, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
           Complex With A Ruthenium Octasporine Ligand (Os1)
          Length = 420

 Score = 34.3 bits (77), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 10/62 (16%)

Query: 412 IGTGGYGSVYRARL-PSGKVVALKKLHCXXXXXXXXXXXFRNKA-RLLSQIRHRNIVKLY 469
           IG G +G VY+A+L  SG++VA+KK+             F+N+  +++ ++ H NIV+L 
Sbjct: 62  IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 113

Query: 470 GF 471
            F
Sbjct: 114 YF 115


>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
           Peptide And Inhibitor 7d
          Length = 350

 Score = 34.3 bits (77), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 10/62 (16%)

Query: 412 IGTGGYGSVYRARL-PSGKVVALKKLHCXXXXXXXXXXXFRNKA-RLLSQIRHRNIVKLY 469
           IG G +G VY+A+L  SG++VA+KK+             F+N+  +++ ++ H NIV+L 
Sbjct: 28  IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 79

Query: 470 GF 471
            F
Sbjct: 80  YF 81


>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain
 pdb|4AGU|B Chain B, Crystal Structure Of The Human Cdkl1 Kinase Domain
 pdb|4AGU|C Chain C, Crystal Structure Of The Human Cdkl1 Kinase Domain
          Length = 311

 Score = 34.3 bits (77), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 412 IGTGGYGSVYRAR-LPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYG 470
           IG G YG V++ R   +G++VA+KK               R + R+L Q++H N+V L  
Sbjct: 11  IGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALR-EIRMLKQLKHPNLVNLLE 69

Query: 471 FCLHRKCMFLIY 482
               ++ + L++
Sbjct: 70  VFRRKRRLHLVF 81


>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
           3beta In Complex With An Inhibitor
 pdb|3F7Z|B Chain B, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
           3beta In Complex With An Inhibitor
          Length = 350

 Score = 34.3 bits (77), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 10/62 (16%)

Query: 412 IGTGGYGSVYRARL-PSGKVVALKKLHCXXXXXXXXXXXFRNKA-RLLSQIRHRNIVKLY 469
           IG G +G VY+A+L  SG++VA+KK+             F+N+  +++ ++ H NIV+L 
Sbjct: 29  IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 80

Query: 470 GF 471
            F
Sbjct: 81  YF 82


>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp
 pdb|1PYX|B Chain B, Gsk-3 Beta Complexed With Amp-Pnp
 pdb|3DU8|A Chain A, Crystal Structure Of Gsk-3 Beta In Complex With
           Nms-869553a
 pdb|3DU8|B Chain B, Crystal Structure Of Gsk-3 Beta In Complex With
           Nms-869553a
          Length = 422

 Score = 34.3 bits (77), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 10/62 (16%)

Query: 412 IGTGGYGSVYRARL-PSGKVVALKKLHCXXXXXXXXXXXFRNKA-RLLSQIRHRNIVKLY 469
           IG G +G VY+A+L  SG++VA+KK+             F+N+  +++ ++ H NIV+L 
Sbjct: 64  IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 115

Query: 470 GF 471
            F
Sbjct: 116 YF 117


>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
           Gsk-3beta Inhibitors
 pdb|3ZRK|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
           Gsk-3beta Inhibitors
 pdb|3ZRL|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
           Gsk-3beta Inhibitors
 pdb|3ZRL|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
           Gsk-3beta Inhibitors
 pdb|3ZRM|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
           3beta Inhibitors
 pdb|3ZRM|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
           3beta Inhibitors
          Length = 371

 Score = 34.3 bits (77), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 10/62 (16%)

Query: 412 IGTGGYGSVYRARL-PSGKVVALKKLHCXXXXXXXXXXXFRNKA-RLLSQIRHRNIVKLY 469
           IG G +G VY+A+L  SG++VA+KK+             F+N+  +++ ++ H NIV+L 
Sbjct: 40  IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 91

Query: 470 GF 471
            F
Sbjct: 92  YF 93


>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
           That Attenuates Hyperactivity In Clock Mutant Mice
 pdb|3SD0|B Chain B, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
           That Attenuates Hyperactivity In Clock Mutant Mice
 pdb|4B7T|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
           Peptide And Leucettine L4
          Length = 350

 Score = 34.3 bits (77), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 10/62 (16%)

Query: 412 IGTGGYGSVYRARL-PSGKVVALKKLHCXXXXXXXXXXXFRNKA-RLLSQIRHRNIVKLY 469
           IG G +G VY+A+L  SG++VA+KK+             F+N+  +++ ++ H NIV+L 
Sbjct: 28  IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 79

Query: 470 GF 471
            F
Sbjct: 80  YF 81


>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine
 pdb|1Q3D|B Chain B, Gsk-3 Beta Complexed With Staurosporine
 pdb|1Q3W|A Chain A, Gsk-3 Beta Complexed With Alsterpaullone
 pdb|1Q3W|B Chain B, Gsk-3 Beta Complexed With Alsterpaullone
 pdb|1Q41|A Chain A, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
 pdb|1Q41|B Chain B, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
 pdb|1Q4L|A Chain A, Gsk-3 Beta Complexed With Inhibitor I-5
 pdb|1Q4L|B Chain B, Gsk-3 Beta Complexed With Inhibitor I-5
 pdb|3Q3B|A Chain A, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
           Synthase Kinase-3 Inhibitors
 pdb|3Q3B|B Chain B, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
           Synthase Kinase-3 Inhibitors
          Length = 424

 Score = 34.3 bits (77), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 10/62 (16%)

Query: 412 IGTGGYGSVYRARL-PSGKVVALKKLHCXXXXXXXXXXXFRNKA-RLLSQIRHRNIVKLY 469
           IG G +G VY+A+L  SG++VA+KK+             F+N+  +++ ++ H NIV+L 
Sbjct: 66  IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 117

Query: 470 GF 471
            F
Sbjct: 118 YF 119


>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex
 pdb|3F88|B Chain B, Glycogen Synthase Kinase 3beta Inhibitor Complex
          Length = 349

 Score = 34.3 bits (77), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 10/62 (16%)

Query: 412 IGTGGYGSVYRARL-PSGKVVALKKLHCXXXXXXXXXXXFRNKA-RLLSQIRHRNIVKLY 469
           IG G +G VY+A+L  SG++VA+KK+             F+N+  +++ ++ H NIV+L 
Sbjct: 28  IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 79

Query: 470 GF 471
            F
Sbjct: 80  YF 81


>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex
          Length = 353

 Score = 34.3 bits (77), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 10/62 (16%)

Query: 412 IGTGGYGSVYRARL-PSGKVVALKKLHCXXXXXXXXXXXFRNKA-RLLSQIRHRNIVKLY 469
           IG G +G VY+A+L  SG++VA+KK+             F+N+  +++ ++ H NIV+L 
Sbjct: 32  IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 83

Query: 470 GF 471
            F
Sbjct: 84  YF 85


>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor
 pdb|4ACC|B Chain B, Gsk3b In Complex With Inhibitor
 pdb|4ACD|A Chain A, Gsk3b In Complex With Inhibitor
 pdb|4ACD|B Chain B, Gsk3b In Complex With Inhibitor
 pdb|4ACG|A Chain A, Gsk3b In Complex With Inhibitor
 pdb|4ACG|B Chain B, Gsk3b In Complex With Inhibitor
 pdb|4ACH|A Chain A, Gsk3b In Complex With Inhibitor
 pdb|4ACH|B Chain B, Gsk3b In Complex With Inhibitor
          Length = 465

 Score = 34.3 bits (77), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 10/62 (16%)

Query: 412 IGTGGYGSVYRARL-PSGKVVALKKLHCXXXXXXXXXXXFRNKA-RLLSQIRHRNIVKLY 469
           IG G +G VY+A+L  SG++VA+KK+             F+N+  +++ ++ H NIV+L 
Sbjct: 107 IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 158

Query: 470 GF 471
            F
Sbjct: 159 YF 160


>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
           Peptide
          Length = 350

 Score = 34.3 bits (77), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 10/62 (16%)

Query: 412 IGTGGYGSVYRARL-PSGKVVALKKLHCXXXXXXXXXXXFRNKA-RLLSQIRHRNIVKLY 469
           IG G +G VY+A+L  SG++VA+KK+             F+N+  +++ ++ H NIV+L 
Sbjct: 28  IGNGSFGVVYQAKLCDSGELVAIKKV--------LQGKAFKNRELQIMRKLDHCNIVRLR 79

Query: 470 GF 471
            F
Sbjct: 80  YF 81


>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
           Three Fabs (Form1)
 pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
           Three Fabs (Form2)
          Length = 694

 Score = 34.3 bits (77), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 50/105 (47%)

Query: 168 IRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDNKLD 227
           I +L+L+ N+L     ++    +QL +L++  N I+   P     L  ++ + L  N+L 
Sbjct: 37  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96

Query: 228 GPIPPELMNCSKLMELELGNNLLRGSIPSEIGKLQELYYLDLSHN 272
                    C+ L EL L +N ++    +   K + L  LDLSHN
Sbjct: 97  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 141



 Score = 33.9 bits (76), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 121/295 (41%), Gaps = 29/295 (9%)

Query: 4   LRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSN-----SLVGNIPSTLGHLTQLTTL 58
           L+ L HL++ DN + G        L  L+ L LS++     +L      +L H + L  L
Sbjct: 338 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHIL 396

Query: 59  AIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIP-STFGHLKRLKSLDLSQNKLVGPI 117
            +  N I+         L  L+VLDL  NEI   +    +  L+ +  + LS NK +   
Sbjct: 397 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 456

Query: 118 PSSLGHLTQLTTLNMRSNLIN---------ASLVNLTSLSLHYNNLTGPIPSTLGHLNRI 168
            +S   +  L  L +R   +            L NLT L L  NN+       L  L ++
Sbjct: 457 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 516

Query: 169 RILDLSENKLV---------GPIPSSVGHLTQLNTLNMYSNQINGSIPLEI-GNLKRVEA 218
            ILDL  N L          GPI    G L+ L+ LN+ SN  +  IP+E+  +L  ++ 
Sbjct: 517 EILDLQHNNLARLWKHANPGGPIYFLKG-LSHLHILNLESNGFD-EIPVEVFKDLFELKI 574

Query: 219 VKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIG-KLQELYYLDLSHN 272
           + L  N L+        N   L  L L  NL+        G   + L  LD+  N
Sbjct: 575 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 629



 Score = 32.7 bits (73), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 68/174 (39%), Gaps = 26/174 (14%)

Query: 4   LRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASN 63
           LRNL  LDLS+N +       L  L KLE L L  N+L                 A    
Sbjct: 489 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL-----------------ARLWK 531

Query: 64  HINVSIPLE-IGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLG 122
           H N   P+  +  L+ L +L+L  N         F  L  LK +DL  N L     S   
Sbjct: 532 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 591

Query: 123 HLTQLTTLNMRSNLINA--------SLVNLTSLSLHYNNLTGPIPSTLGHLNRI 168
           +   L +LN++ NLI +        +  NLT L + +N       S    +N I
Sbjct: 592 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI 645



 Score = 31.6 bits (70), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 119/287 (41%), Gaps = 29/287 (10%)

Query: 27  RLSKLENLHLSSNSL--VGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDL 84
           + + L  L LS N+L  VGN   +   L QL    +  N+I       +  L  ++ L+L
Sbjct: 256 KWTNLTMLDLSYNNLNVVGN--DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 313

Query: 85  SGNEIRGSIP---------STFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSN 135
             +  + SI           +F  LK L+ L++  N + G I S           NM + 
Sbjct: 314 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKS-----------NMFTG 361

Query: 136 LINASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTL 195
           LIN   ++L++       LT     +L H + + IL+L++NK+      +   L  L  L
Sbjct: 362 LINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVL 420

Query: 196 NMYSNQINGSIP-LEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRG-- 252
           ++  N+I   +   E   L+ +  + L  NK              L  L L    L+   
Sbjct: 421 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 480

Query: 253 SIPSEIGKLQELYYLDLSHNFINGKILSELGAIPSIDTVDLSMNNLS 299
           S PS    L+ L  LDLS+N I       L  +  ++ +DL  NNL+
Sbjct: 481 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 527



 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 108/262 (41%), Gaps = 18/262 (6%)

Query: 53  TQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNK 112
           T +T L +  N +           + L  LD+  N I    P     L  LK L+L  N+
Sbjct: 35  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94

Query: 113 LVGPIPSSLGHLTQLTTLNMRSNLI----NASLV---NLTSLSLHYNNLTGPIPSTLGHL 165
           L      +    T LT L++ SN I    N   V   NL +L L +N L+     T   L
Sbjct: 95  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 154

Query: 166 NRIRILDLSENKLVGPIPSSVGHL--TQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYD 223
             ++ L LS NK+       +     + L  L + SNQI    P     + R+  + L +
Sbjct: 155 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 214

Query: 224 NKLDGP-----IPPELMNCSKLMELELGNNLLR-GSIPSEIG-KLQELYYLDLSHNFING 276
            +L GP     +  EL N S +  L L N+ L   S  + +G K   L  LDLS+N +N 
Sbjct: 215 VQL-GPSLTEKLCLELANTS-IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 272

Query: 277 KILSELGAIPSIDTVDLSMNNL 298
                   +P ++   L  NN+
Sbjct: 273 VGNDSFAWLPQLEYFFLEYNNI 294


>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
 pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
          Length = 298

 Score = 34.3 bits (77), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 413 GTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXX-XXXFRNKARLLSQIRHRNIVKLYGF 471
           G GG+G VY+  + +   VA+KKL              F  + ++ ++ +H N+V+L GF
Sbjct: 31  GEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVXAKCQHENLVELLGF 89

Query: 472 CLHRKCMFLIY 482
                 + L+Y
Sbjct: 90  SSDGDDLCLVY 100


>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta.
 pdb|1H8F|B Chain B, Glycogen Synthase Kinase 3 Beta
          Length = 352

 Score = 34.3 bits (77), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 10/62 (16%)

Query: 412 IGTGGYGSVYRARL-PSGKVVALKKLHCXXXXXXXXXXXFRNKA-RLLSQIRHRNIVKLY 469
           IG G +G VY+A+L  SG++VA+KK+             F+N+  +++ ++ H NIV+L 
Sbjct: 28  IGNGSFGVVYQAKLCDSGELVAIKKV--------LQGKAFKNRELQIMRKLDHCNIVRLR 79

Query: 470 GF 471
            F
Sbjct: 80  YF 81


>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
           Binding Domain
          Length = 705

 Score = 34.3 bits (77), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 50/105 (47%)

Query: 168 IRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDNKLD 227
           I +L+L+ N+L     ++    +QL +L++  N I+   P     L  ++ + L  N+L 
Sbjct: 32  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91

Query: 228 GPIPPELMNCSKLMELELGNNLLRGSIPSEIGKLQELYYLDLSHN 272
                    C+ L EL L +N ++    +   K + L  LDLSHN
Sbjct: 92  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 136



 Score = 33.9 bits (76), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 123/297 (41%), Gaps = 33/297 (11%)

Query: 4   LRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSN-----SLVGNIPSTLGHLTQLTTL 58
           L+ L HL++ DN + G        L  L+ L LS++     +L      +L H + L  L
Sbjct: 333 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHIL 391

Query: 59  AIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIP-STFGHLKRLKSLDLSQNKLVGPI 117
            +  N I+         L  L+VLDL  NEI   +    +  L+ +  + LS NK +   
Sbjct: 392 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 451

Query: 118 PSSLGHLTQLTTLNMRSNLIN---------ASLVNLTSLSLHYNNLTGPIPSTLGHLNRI 168
            +S   +  L  L +R   +            L NLT L L  NN+       L  L ++
Sbjct: 452 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 511

Query: 169 RILDLSENKLV---------GPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAV 219
            ILDL  N L          GPI    G L+ L+ LN+ SN  +  IP+E+   K +  +
Sbjct: 512 EILDLQHNNLARLWKHANPGGPIYFLKG-LSHLHILNLESNGFD-EIPVEV--FKDLFEL 567

Query: 220 KLYDNKLD--GPIPPELMNCS-KLMELELGNNLLRGSIPSEIG-KLQELYYLDLSHN 272
           K+ D  L+    +P  + N    L  L L  NL+        G   + L  LD+  N
Sbjct: 568 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 624



 Score = 32.7 bits (73), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 68/174 (39%), Gaps = 26/174 (14%)

Query: 4   LRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASN 63
           LRNL  LDLS+N +       L  L KLE L L  N+L                 A    
Sbjct: 484 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL-----------------ARLWK 526

Query: 64  HINVSIPLE-IGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLG 122
           H N   P+  +  L+ L +L+L  N         F  L  LK +DL  N L     S   
Sbjct: 527 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 586

Query: 123 HLTQLTTLNMRSNLINA--------SLVNLTSLSLHYNNLTGPIPSTLGHLNRI 168
           +   L +LN++ NLI +        +  NLT L + +N       S    +N I
Sbjct: 587 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI 640



 Score = 31.6 bits (70), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 119/287 (41%), Gaps = 29/287 (10%)

Query: 27  RLSKLENLHLSSNSL--VGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDL 84
           + + L  L LS N+L  VGN   +   L QL    +  N+I       +  L  ++ L+L
Sbjct: 251 KWTNLTMLDLSYNNLNVVGN--DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 308

Query: 85  SGNEIRGSIP---------STFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSN 135
             +  + SI           +F  LK L+ L++  N + G I S           NM + 
Sbjct: 309 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKS-----------NMFTG 356

Query: 136 LINASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTL 195
           LIN   ++L++       LT     +L H + + IL+L++NK+      +   L  L  L
Sbjct: 357 LINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVL 415

Query: 196 NMYSNQINGSIP-LEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRG-- 252
           ++  N+I   +   E   L+ +  + L  NK              L  L L    L+   
Sbjct: 416 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 475

Query: 253 SIPSEIGKLQELYYLDLSHNFINGKILSELGAIPSIDTVDLSMNNLS 299
           S PS    L+ L  LDLS+N I       L  +  ++ +DL  NNL+
Sbjct: 476 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 522



 Score = 31.2 bits (69), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 108/262 (41%), Gaps = 18/262 (6%)

Query: 53  TQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNK 112
           T +T L +  N +           + L  LD+  N I    P     L  LK L+L  N+
Sbjct: 30  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89

Query: 113 LVGPIPSSLGHLTQLTTLNMRSNLI----NASLV---NLTSLSLHYNNLTGPIPSTLGHL 165
           L      +    T LT L++ SN I    N   V   NL +L L +N L+     T   L
Sbjct: 90  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 149

Query: 166 NRIRILDLSENKLVGPIPSSVGHL--TQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYD 223
             ++ L LS NK+       +     + L  L + SNQI    P     + R+  + L +
Sbjct: 150 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 209

Query: 224 NKLDGP-----IPPELMNCSKLMELELGNNLLR-GSIPSEIG-KLQELYYLDLSHNFING 276
            +L GP     +  EL N S +  L L N+ L   S  + +G K   L  LDLS+N +N 
Sbjct: 210 VQL-GPSLTEKLCLELANTS-IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 267

Query: 277 KILSELGAIPSIDTVDLSMNNL 298
                   +P ++   L  NN+
Sbjct: 268 VGNDSFAWLPQLEYFFLEYNNI 289


>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With
           6-Bromoindirubin-3'-Oxime
          Length = 350

 Score = 34.3 bits (77), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 10/62 (16%)

Query: 412 IGTGGYGSVYRARL-PSGKVVALKKLHCXXXXXXXXXXXFRNKA-RLLSQIRHRNIVKLY 469
           IG G +G VY+A+L  SG++VA+KK+             F+N+  +++ ++ H NIV+L 
Sbjct: 28  IGNGSFGVVYQAKLCDSGELVAIKKV--------LQGKAFKNRELQIMRKLDHCNIVRLR 79

Query: 470 GF 471
            F
Sbjct: 80  YF 81


>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
           Complex With Staurosporine
 pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
           Complex With Staurosporine
          Length = 309

 Score = 33.9 bits (76), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 390 YDGRITFQDIIEATEDFHIKYCIGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXX 449
           + G +   D+     D +IK  IG G +G+V+RA    G  VA+K L             
Sbjct: 23  FQGAMDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEF 81

Query: 450 FRNKARLLSQIRHRNIVKLYG 470
            R  A ++ ++RH NIV   G
Sbjct: 82  LREVA-IMKRLRHPNIVLFMG 101


>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia
 pdb|3GC0|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia In
           Complex With Amp
          Length = 329

 Score = 33.9 bits (76), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 412 IGTGGYGSVYRA-RLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYG 470
           +G G YG VY+A    + + VA+K++              R +  LL +++HRNI++L  
Sbjct: 42  LGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIR-EVSLLKELQHRNIIELKS 100

Query: 471 FCLHRKCMFLIY 482
              H   + LI+
Sbjct: 101 VIHHNHRLHLIF 112


>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
          Length = 680

 Score = 33.9 bits (76), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 50/105 (47%)

Query: 168 IRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDNKLD 227
           I +L+L+ N+L     ++    +QL +L++  N I+   P     L  ++ + L  N+L 
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 228 GPIPPELMNCSKLMELELGNNLLRGSIPSEIGKLQELYYLDLSHN 272
                    C+ L EL L +N ++    +   K + L  LDLSHN
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131



 Score = 33.5 bits (75), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 121/295 (41%), Gaps = 29/295 (9%)

Query: 4   LRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSN-----SLVGNIPSTLGHLTQLTTL 58
           L+ L HL++ DN + G        L  L+ L LS++     +L      +L H + L  L
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHIL 386

Query: 59  AIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIP-STFGHLKRLKSLDLSQNKLVGPI 117
            +  N I+         L  L+VLDL  NEI   +    +  L+ +  + LS NK +   
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446

Query: 118 PSSLGHLTQLTTLNMRSNLIN---------ASLVNLTSLSLHYNNLTGPIPSTLGHLNRI 168
            +S   +  L  L +R   +            L NLT L L  NN+       L  L ++
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506

Query: 169 RILDLSENKLV---------GPIPSSVGHLTQLNTLNMYSNQINGSIPLEI-GNLKRVEA 218
            ILDL  N L          GPI    G L+ L+ LN+ SN  +  IP+E+  +L  ++ 
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKG-LSHLHILNLESNGFD-EIPVEVFKDLFELKI 564

Query: 219 VKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIG-KLQELYYLDLSHN 272
           + L  N L+        N   L  L L  NL+        G   + L  LD+  N
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619



 Score = 32.7 bits (73), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 68/174 (39%), Gaps = 26/174 (14%)

Query: 4   LRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASN 63
           LRNL  LDLS+N +       L  L KLE L L  N+L                 A    
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL-----------------ARLWK 521

Query: 64  HINVSIPLE-IGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLG 122
           H N   P+  +  L+ L +L+L  N         F  L  LK +DL  N L     S   
Sbjct: 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581

Query: 123 HLTQLTTLNMRSNLINA--------SLVNLTSLSLHYNNLTGPIPSTLGHLNRI 168
           +   L +LN++ NLI +        +  NLT L + +N       S    +N I
Sbjct: 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI 635



 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 119/287 (41%), Gaps = 29/287 (10%)

Query: 27  RLSKLENLHLSSNSL--VGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDL 84
           + + L  L LS N+L  VGN   +   L QL    +  N+I       +  L  ++ L+L
Sbjct: 246 KWTNLTMLDLSYNNLNVVGN--DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303

Query: 85  SGNEIRGSIP---------STFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSN 135
             +  + SI           +F  LK L+ L++  N + G I S           NM + 
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKS-----------NMFTG 351

Query: 136 LINASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTL 195
           LIN   ++L++       LT     +L H + + IL+L++NK+      +   L  L  L
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVL 410

Query: 196 NMYSNQINGSIP-LEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRG-- 252
           ++  N+I   +   E   L+ +  + L  NK              L  L L    L+   
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470

Query: 253 SIPSEIGKLQELYYLDLSHNFINGKILSELGAIPSIDTVDLSMNNLS 299
           S PS    L+ L  LDLS+N I       L  +  ++ +DL  NNL+
Sbjct: 471 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517



 Score = 30.8 bits (68), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 108/262 (41%), Gaps = 18/262 (6%)

Query: 53  TQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNK 112
           T +T L +  N +           + L  LD+  N I    P     L  LK L+L  N+
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 113 LVGPIPSSLGHLTQLTTLNMRSNLI----NASLV---NLTSLSLHYNNLTGPIPSTLGHL 165
           L      +    T LT L++ SN I    N   V   NL +L L +N L+     T   L
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144

Query: 166 NRIRILDLSENKLVGPIPSSVGHL--TQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYD 223
             ++ L LS NK+       +     + L  L + SNQI    P     + R+  + L +
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204

Query: 224 NKLDGP-----IPPELMNCSKLMELELGNNLLR-GSIPSEIG-KLQELYYLDLSHNFING 276
            +L GP     +  EL N S +  L L N+ L   S  + +G K   L  LDLS+N +N 
Sbjct: 205 VQL-GPSLTEKLCLELANTS-IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262

Query: 277 KILSELGAIPSIDTVDLSMNNL 298
                   +P ++   L  NN+
Sbjct: 263 VGNDSFAWLPQLEYFFLEYNNI 284


>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
           Staurosporine
 pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
           Staurosporine
          Length = 309

 Score = 33.9 bits (76), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 390 YDGRITFQDIIEATEDFHIKYCIGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXX 449
           + G +   D+     D +IK  IG G +G+V+RA    G  VA+K L             
Sbjct: 23  FQGAMDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEF 81

Query: 450 FRNKARLLSQIRHRNIVKLYG 470
            R  A ++ ++RH NIV   G
Sbjct: 82  LREVA-IMKRLRHPNIVLFMG 101


>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And
           Inactive Conformations Suggests A Mechanism Of
           Activation For Tec Family Kinases
          Length = 283

 Score = 33.9 bits (76), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           +GTG +G V   +      VA+K +             F  +A+++  + H  +V+LYG 
Sbjct: 32  LGTGQFGVVKYGKWRGQYDVAIKMIK----EGSMSEDEFIEEAKVMMNLSHEKLVQLYGV 87

Query: 472 CLHRKCMFLI 481
           C  ++ +F+I
Sbjct: 88  CTKQRPIFII 97


>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
           Rodent Cancer Tumor Models
 pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
           Rodent Cancer Tumor Models
          Length = 297

 Score = 33.9 bits (76), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 405 DFHIKYCIGTGGYGSVYRAR---LPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIR 461
           D  +K  +G G +G V+ A    L   K   L  +             F+ +A LL+ ++
Sbjct: 16  DIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQ 75

Query: 462 HRNIVKLYGFC 472
           H +IVK YG C
Sbjct: 76  HEHIVKFYGVC 86


>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine
           Kinase Bound To A Pyrrolopyrimidine-Containing Compound
          Length = 283

 Score = 33.5 bits (75), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           +GTG +G V   +      VA+K +             F  +A+++  + H  +V+LYG 
Sbjct: 32  LGTGQFGVVKYGKWRGQYDVAIKMIK----EGSMSEDEFIEEAKVMMNLSHEKLVQLYGV 87

Query: 472 CLHRKCMFLI 481
           C  ++ +F+I
Sbjct: 88  CTKQRPIFII 97


>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
          Length = 170

 Score = 33.5 bits (75), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 80  QVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINA 139
           QVL L  N+I    P  F  L +L  LDL  N+L          LTQLT L++  N + +
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92

Query: 140 ----SLVNLTSLS 148
               +  NL SL+
Sbjct: 93  IPRGAFDNLKSLT 105



 Score = 32.3 bits (72), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 147 LSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSV-GHLTQLNTLNMYSNQINGS 205
           L L+ N +T   P     L ++  LDL  N+L   +P+ V   LTQL  L++  NQ+  S
Sbjct: 35  LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQLK-S 92

Query: 206 IPL-EIGNLKRVEAVKLYDNKLD 227
           IP     NLK +  + L +N  D
Sbjct: 93  IPRGAFDNLKSLTHIWLLNNPWD 115


>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 33.5 bits (75), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 1/100 (1%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAI 60
           +  L+NL  L + ++ L   + P +  L KLE L L   + + N P   G    L  L +
Sbjct: 202 IANLQNLKSLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260

Query: 61  ASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHL 100
                 +++PL+I  L  L+ LDL G      +PS    L
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300



 Score = 32.7 bits (73), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 42  VGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLK 101
           + ++P+++ +L  L +L I ++ ++   P  I +L  L+ LDL G     + P  FG   
Sbjct: 195 IRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRA 253

Query: 102 RLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMR 133
            LK L L     +  +P  +  LTQL  L++R
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285



 Score = 32.3 bits (72), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 11/125 (8%)

Query: 140 SLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSE----NKLVGPIPSSVGHLTQLNTL 195
               L +L+L  N L   +P+++  LNR+R L +       +L  P+ S+         +
Sbjct: 125 QFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 196 NMYSNQING----SIPLEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELEL-GNNLL 250
           N+ S ++      S+P  I NL+ ++++K+ ++ L   + P + +  KL EL+L G   L
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTAL 242

Query: 251 RGSIP 255
           R   P
Sbjct: 243 RNYPP 247


>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
           Complex With A Protein Antigen
 pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
           Complex With A Protein Antigen
 pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
           Complex With A Protein Antigen
 pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
           Complex With A Protein Antigen
          Length = 178

 Score = 33.5 bits (75), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 80  QVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINA 139
           QVL L  N+I    P  F  L +L  LDL  N+L          LTQLT L++  N + +
Sbjct: 41  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 100

Query: 140 ----SLVNLTSLS 148
               +  NL SL+
Sbjct: 101 IPRGAFDNLKSLT 113



 Score = 32.7 bits (73), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 147 LSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSV-GHLTQLNTLNMYSNQINGS 205
           L L+ N +T   P     L ++  LDL  N+L   +P+ V   LTQL  L++  NQ+  S
Sbjct: 43  LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQLK-S 100

Query: 206 IPL-EIGNLKRVEAVKLYDNKLD 227
           IP     NLK +  + L +N  D
Sbjct: 101 IPRGAFDNLKSLTHIWLLNNPWD 123



 Score = 28.5 bits (62), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 10  LDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSI 69
           L L DN +    P    RL++L  L L +N L          LTQLT L++  N +  SI
Sbjct: 43  LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SI 101

Query: 70  P 70
           P
Sbjct: 102 P 102


>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
           With Small Molecule Fragment
 pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
           With Small Molecule Fragment
          Length = 293

 Score = 33.5 bits (75), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 405 DFHIKYCIGTGGYGSVYRARLPSGKV-VALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           D  +K+ +G G +G VY        + VA+K L             F  +A ++ +I+H 
Sbjct: 12  DITMKHKLGGGQFGEVYEGVWKKYSLTVAVKTLK----EDTMEVEEFLKEAAVMKEIKHP 67

Query: 464 NIVKLYGFCLHRKCMFLI 481
           N+V+L G C      ++I
Sbjct: 68  NLVQLLGVCTREPPFYII 85


>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
           Domain Of Glycoprotein Ib Alpha
 pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
           Domain Of Glycoprotein Ib Alpha
          Length = 290

 Score = 33.5 bits (75), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 3/111 (2%)

Query: 26  GRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPL-EIGNLNFLQVLDL 84
           G L  L  L LS N L  ++P     L  LT L ++ N +  S+PL  +  L  LQ L L
Sbjct: 74  GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYL 131

Query: 85  SGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSN 135
            GNE++   P       +L+ L L+ N+L       L  L  L TL ++ N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182



 Score = 29.3 bits (64), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 13/121 (10%)

Query: 212 NLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIGKLQELYYLDLSH 271
           NL R E  KL   ++DG +P        L  L+L +N L+ S+P     L  L  LD+S 
Sbjct: 61  NLDRCELTKL---QVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109

Query: 272 NFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSVRKVPHLD--VLGNNLEGEIPSTSAN 329
           N +    L  L  +  +  + L  N L    P  +   P L+   L NN   E+P+   N
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169

Query: 330 G 330
           G
Sbjct: 170 G 170


>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
 pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
           Cpd5n
 pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
           Ex429
 pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
           Gw2580
          Length = 299

 Score = 33.5 bits (75), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 408 IKYCIGTGGYGSVYRARL------PSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIR 461
           +K  +G G +G V+ A            +VA+K L             F  +A LL+ ++
Sbjct: 17  LKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTL---KDASDNARKDFHREAELLTNLQ 73

Query: 462 HRNIVKLYGFCLHRKCMFLIY 482
           H +IVK YG C+    + +++
Sbjct: 74  HEHIVKFYGVCVEGDPLIMVF 94


>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain
 pdb|3P08|B Chain B, Crystal Structure Of The Human Btk Kinase Domain
          Length = 267

 Score = 33.5 bits (75), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           +GTG +G V   +      VA+K +             F  +A+++  + H  +V+LYG 
Sbjct: 16  LGTGQFGVVKYGKWRGQYDVAIKMIK----EGSMSEDEFIEEAKVMMNLSHEKLVQLYGV 71

Query: 472 CLHRKCMFLI 481
           C  ++ +F+I
Sbjct: 72  CTKQRPIFII 81


>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
           And The Von Willebrand Factor A1 Domain
          Length = 290

 Score = 33.5 bits (75), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 3/111 (2%)

Query: 26  GRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPL-EIGNLNFLQVLDL 84
           G L  L  L LS N L  ++P     L  LT L ++ N +  S+PL  +  L  LQ L L
Sbjct: 74  GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYL 131

Query: 85  SGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSN 135
            GNE++   P       +L+ L L+ N+L       L  L  L TL ++ N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182



 Score = 29.3 bits (64), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 13/121 (10%)

Query: 212 NLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIGKLQELYYLDLSH 271
           NL R E  KL   ++DG +P        L  L+L +N L+ S+P     L  L  LD+S 
Sbjct: 61  NLDRCELTKL---QVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109

Query: 272 NFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSVRKVPHLD--VLGNNLEGEIPSTSAN 329
           N +    L  L  +  +  + L  N L    P  +   P L+   L NN   E+P+   N
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169

Query: 330 G 330
           G
Sbjct: 170 G 170


>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
           2-Isopropyl-7-
           (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3-
           Ylamino)-2h- Phthalazin-1-One
 pdb|3PIY|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With R406
 pdb|3PIZ|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
           (5-Amino-1-O-
           Tolyl-1h-Pyrazol-4-Yl)-[3-(1-Methanesulfonyl-Piperidin-
           4-Yl)-Phenyl]- Methanone
 pdb|3PJ1|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
           3-(2,6-Dichloro-
           Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]-1-
           Methyl-3,4- Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
 pdb|3PJ2|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
           2-[4-(2-
           Diethylamino-Ethoxy)-Phenylamino]-6-(4-Fluoro-Phenoxy)-
           8-Methyl-8h- Pyrido[2,3-D]pyrimidin-7-One
 pdb|3PJ3|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
           2-Methyl-5-[(E)-
           (3-Phenyl-Acryloyl)amino]-N-(2-Phenyl-3h-Imidazo[4,
           5-B]pyridin-6-Yl)- Benzamide
          Length = 274

 Score = 33.5 bits (75), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           +GTG +G V   +      VA+K +             F  +A+++  + H  +V+LYG 
Sbjct: 23  LGTGQFGVVKYGKWRGQYDVAIKMIK----EGSMSEDEFIEEAKVMMNLSHEKLVQLYGV 78

Query: 472 CLHRKCMFLI 481
           C  ++ +F+I
Sbjct: 79  CTKQRPIFII 88


>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma
 pdb|1CM8|B Chain B, Phosphorylated Map Kinase P38-Gamma
          Length = 367

 Score = 33.5 bits (75), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 23/102 (22%)

Query: 372 PAETG----EITKCADEFAIWNYDGRITFQDIIEATEDFHIKYCIGTGGYGSVYRA-RLP 426
           PA +G    E+TK A       ++ R  ++D+            +G+G YG+V  A    
Sbjct: 6   PARSGFYRQEVTKTA-------WEVRAVYRDL----------QPVGSGAYGAVCSAVDGR 48

Query: 427 SGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKL 468
           +G  VA+KKL+            +R + RLL  +RH N++ L
Sbjct: 49  TGAKVAIKKLYRPFQSELFAKRAYR-ELRLLKHMRHENVIGL 89


>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex
           With Inhibitor Cgi1746
          Length = 271

 Score = 33.5 bits (75), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           +GTG +G V   +      VA+K +             F  +A+++  + H  +V+LYG 
Sbjct: 17  LGTGQFGVVKYGKWRGQYDVAIKMIK----EGSMSEDEFIEEAKVMMNLSHEKLVQLYGV 72

Query: 472 CLHRKCMFLI 481
           C  ++ +F+I
Sbjct: 73  CTKQRPIFII 82


>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
           Immunodominant Glycoprotein Of Bacillus Anthracis Spores
 pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
           Immunodominant Glycoprotein Of Bacillus Anthracis Spores
 pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
           Immunodominant Glycoprotein Of Bacillus Anthracis Spores
          Length = 179

 Score = 33.1 bits (74), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 147 LSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSI 206
           L L+ N +T   P     L ++  L+L+ N+L          LT+L  L ++ NQ+  SI
Sbjct: 45  LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK-SI 103

Query: 207 PLEI-GNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELE 244
           P+ +  NLK +  + L++N  D         CS ++ L+
Sbjct: 104 PMGVFDNLKSLTHIYLFNNPWD-------CECSDILYLK 135


>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
           Peptide Inhibitor
          Length = 269

 Score = 33.1 bits (74), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 3/111 (2%)

Query: 26  GRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPL-EIGNLNFLQVLDL 84
           G L  L  L LS N L  ++P     L  LT L ++ N +  S+PL  +  L  LQ L L
Sbjct: 74  GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYL 131

Query: 85  SGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSN 135
            GNE++   P       +L+ L L+ N+L       L  L  L TL ++ N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182



 Score = 30.0 bits (66), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 13/121 (10%)

Query: 212 NLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIGKLQELYYLDLSH 271
           NL R E  KL   ++DG +P        L  L+L +N L+ S+P     L  L  LD+S 
Sbjct: 61  NLDRCELTKL---QVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109

Query: 272 NFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSVRKVPHLD--VLGNNLEGEIPSTSAN 329
           N +    L  L  +  +  + L  N L    P  +   P L+   L NN   E+P+   N
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169

Query: 330 G 330
           G
Sbjct: 170 G 170


>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain
 pdb|1K2P|B Chain B, Crystal Structure Of Bruton's Tyrosine Kinase Domain
          Length = 263

 Score = 33.1 bits (74), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           +GTG +G V   +      VA+K +             F  +A+++  + H  +V+LYG 
Sbjct: 12  LGTGQFGVVKYGKWRGQYDVAIKMIK----EGSMSEDEFIEEAKVMMNLSHEKLVQLYGV 67

Query: 472 CLHRKCMFLI 481
           C  ++ +F+I
Sbjct: 68  CTKQRPIFII 77


>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
           Botrocetin Complex
          Length = 265

 Score = 33.1 bits (74), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 3/111 (2%)

Query: 26  GRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPL-EIGNLNFLQVLDL 84
           G L  L  L LS N L  ++P     L  LT L ++ N +  S+PL  +  L  LQ L L
Sbjct: 74  GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYL 131

Query: 85  SGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSN 135
            GNE++   P       +L+ L L+ N+L       L  L  L TL ++ N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182



 Score = 30.0 bits (66), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 13/121 (10%)

Query: 212 NLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGSIPSEIGKLQELYYLDLSH 271
           NL R E  KL   ++DG +P        L  L+L +N L+ S+P     L  L  LD+S 
Sbjct: 61  NLDRCELTKL---QVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109

Query: 272 NFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSVRKVPHLD--VLGNNLEGEIPSTSAN 329
           N +    L  L  +  +  + L  N L    P  +   P L+   L NN   E+P+   N
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169

Query: 330 G 330
           G
Sbjct: 170 G 170


>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And
           Drb
 pdb|4EC9|A Chain A, Crystal Structure Of Full-Length Cdk9 In Complex With
           Cyclin T
          Length = 373

 Score = 33.1 bits (74), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 412 IGTGGYGSVYRAR-LPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYG 470
           IG G +G V++AR   +G+ VALKK+              R + ++L  ++H N+V L  
Sbjct: 26  IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALR-EIKILQLLKHENVVNLIE 84

Query: 471 FC 472
            C
Sbjct: 85  IC 86


>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r
           In Complex With Dasatinib
          Length = 265

 Score = 33.1 bits (74), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           +GTG +G V   +      VA+K +             F  +A+++  + H  +V+LYG 
Sbjct: 17  LGTGQFGVVKYGKWRGQYDVAIKMIK----EGSMSEDEFIEEAKVMMNLSHEKLVQLYGV 72

Query: 472 CLHRKCMFLI 481
           C  ++ +F+I
Sbjct: 73  CTKQRPIFII 82


>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1
 pdb|3BLQ|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
           ATP
 pdb|3BLR|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
           Flavopiridol
 pdb|3MY1|A Chain A, Structure Of Cdk9CYCLINT1 IN COMPLEX WITH DRB
 pdb|3LQ5|A Chain A, Structure Of Cdk9CYCLINT IN COMPLEX WITH S-Cr8
 pdb|3TN8|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
 pdb|3TNH|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
 pdb|3TNI|A Chain A, Structure Of Cdk9CYCLIN T F241L
 pdb|4BCH|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
           2-amino-4- Heteroaryl-pyrimidine Inhibitor
 pdb|4BCI|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
           2-amino-4- Heteroaryl-pyrimidine Inhibitor
 pdb|4BCJ|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
           2-amino-4- Heteroaryl-pyrimidine Inhibitor
          Length = 331

 Score = 33.1 bits (74), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 412 IGTGGYGSVYRAR-LPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYG 470
           IG G +G V++AR   +G+ VALKK+              R + ++L  ++H N+V L  
Sbjct: 26  IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALR-EIKILQLLKHENVVNLIE 84

Query: 471 FC 472
            C
Sbjct: 85  IC 86


>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
           2-amino-4- Heteroaryl-pyrimidine Inhibitor
          Length = 331

 Score = 33.1 bits (74), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 412 IGTGGYGSVYRAR-LPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYG 470
           IG G +G V++AR   +G+ VALKK+              R + ++L  ++H N+V L  
Sbjct: 26  IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALR-EIKILQLLKHENVVNLIE 84

Query: 471 FC 472
            C
Sbjct: 85  IC 86


>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
           The Skp1-Skp2 Complex
 pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
           The Skp1-Skp2 Complex
 pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
           The Skp1-Skp2 Complex
 pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
           The Skp1-Skp2 Complex
 pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
           The Skp1-Skp2 Complex
 pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
           The Skp1-Skp2 Complex
 pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
           The Skp1-Skp2 Complex
 pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
           The Skp1-Skp2 Complex
 pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
 pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
           Peptide
          Length = 336

 Score = 33.1 bits (74), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 95/239 (39%), Gaps = 36/239 (15%)

Query: 79  LQVLDLSGNEIR-GSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLI 137
           +Q +DLS + I   ++        +L++L L   +L  PI         + TL   SNL+
Sbjct: 95  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPI---------VNTLAKNSNLV 145

Query: 138 NASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNM 197
             +L   +  S           S L  LN     D +E  +   +      +TQLN L+ 
Sbjct: 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN-LSG 204

Query: 198 YSNQINGSIPLEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNN-LLRGSIPS 256
           Y   +  S   ++  L R                     C  L+ L+L ++ +L+     
Sbjct: 205 YRKNLQKS---DLSTLVR--------------------RCPNLVHLDLSDSVMLKNDCFQ 241

Query: 257 EIGKLQELYYLDLSHNF-INGKILSELGAIPSIDTVDLSMNNLSGSIPKSVRKVPHLDV 314
           E  +L  L +L LS  + I  + L ELG IP++ T+ +      G++      +PHL +
Sbjct: 242 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI 300


>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
           Sh3 Domain
 pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
           Sh3 Domain
 pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
           Sh3 Domain
 pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
           Sh3 Domain
          Length = 341

 Score = 33.1 bits (74), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 404 EDFHIKYCIGTGGYGSVYRARL--PSGKVV--ALKKLHCXXXXXXXXXXXFRNKARLLSQ 459
           +D  +   +G G +G V R     PSGK V  A+K L             F  +   +  
Sbjct: 12  KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 71

Query: 460 IRHRNIVKLYGFCL 473
           + HRN+++LYG  L
Sbjct: 72  LDHRNLIRLYGVVL 85


>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb
 pdb|3MIA|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Atp-Bound
           Human P-Tefb
          Length = 351

 Score = 33.1 bits (74), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 412 IGTGGYGSVYRAR-LPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYG 470
           IG G +G V++AR   +G+ VALKK+              R + ++L  ++H N+V L  
Sbjct: 25  IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALR-EIKILQLLKHENVVNLIE 83

Query: 471 FC 472
            C
Sbjct: 84  IC 85


>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
           Toll Receptor
 pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
           Toll Receptor
 pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
           Toll Receptor
 pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
           Toll Receptor
 pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
           Toll Receptor With The Magic Triangle I3c
 pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
           Toll Receptor With The Magic Triangle I3c
          Length = 279

 Score = 32.7 bits (73), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 5/130 (3%)

Query: 25  LGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVS-IPLEI-GNLNFLQVL 82
           L RL  L+    ++  L  +IP+ L  LT +  L+      N+  +P  +  +L  L+ +
Sbjct: 119 LDRLHGLKRFRFTTRRLT-HIPANL--LTDMRNLSHLELRANIEEMPSHLFDDLENLESI 175

Query: 83  DLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINASLV 142
           +   N++R      FG + +LK L+L+ N+L          LT L  + + +N  + S  
Sbjct: 176 EFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 235

Query: 143 NLTSLSLHYN 152
            +  LS   N
Sbjct: 236 RIDYLSRWLN 245


>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And
           Unphosphorylated Kinase Domains Of The Cdc42-Associated
           Tyrosine Kinase Ack1 Bound To Amp-Pcp
          Length = 291

 Score = 32.7 bits (73), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 404 EDFHIKYCIGTGGYGSVYRARL--PSGKVV--ALKKLHCXXXXXXXXXXXFRNKARLLSQ 459
           +D  +   +G G +G V R     PSGK V  A+K L             F  +   +  
Sbjct: 18  KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 77

Query: 460 IRHRNIVKLYGFCL 473
           + HRN+++LYG  L
Sbjct: 78  LDHRNLIRLYGVVL 91


>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor
 pdb|4EWH|A Chain A, Co-Crystal Structure Of Ack1 With Inhibitor
          Length = 275

 Score = 32.7 bits (73), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 404 EDFHIKYCIGTGGYGSVYRARL--PSGKVV--ALKKLHCXXXXXXXXXXXFRNKARLLSQ 459
           +D  +   +G G +G V R     PSGK V  A+K L             F  +   +  
Sbjct: 8   KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 67

Query: 460 IRHRNIVKLYGFCL 473
           + HRN+++LYG  L
Sbjct: 68  LDHRNLIRLYGVVL 81


>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
           Amigo-1
 pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
           Amigo-1
          Length = 361

 Score = 32.7 bits (73), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 10/133 (7%)

Query: 10  LDLSDN---YLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHIN 66
           LDLS N    L     PT  RL+ L +L LS N L          +  L  L ++SNH++
Sbjct: 44  LDLSHNNLSRLRAEWTPT--RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101

Query: 67  VSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSL----G 122
                   +L  L+VL L  N I     + F  + +L+ L LSQN+ +   P  L     
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGN 160

Query: 123 HLTQLTTLNMRSN 135
            L +L  L++ SN
Sbjct: 161 KLPKLMLLDLSSN 173



 Score = 32.3 bits (72), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 11/155 (7%)

Query: 117 IPSSLGHLTQLTTLN------MRSNLINASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRI 170
           +P SL   T L  L+      +R+      L NL SL L +N+L          +  +R 
Sbjct: 33  VPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRY 92

Query: 171 LDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDNKLDGPI 230
           LDLS N L          L  L  L +Y+N I         ++ +++ + L  N++    
Sbjct: 93  LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRF 151

Query: 231 PPELM----NCSKLMELELGNNLLRGSIPSEIGKL 261
           P EL+       KLM L+L +N L+    +++ KL
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186


>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95
 pdb|3EQP|A Chain A, Crystal Structure Of Ack1 With Compound T95
 pdb|3EQR|A Chain A, Crystal Structure Of Ack1 With Compound T74
 pdb|3EQR|B Chain B, Crystal Structure Of Ack1 With Compound T74
          Length = 276

 Score = 32.7 bits (73), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 404 EDFHIKYCIGTGGYGSVYRARL--PSGKVV--ALKKLHCXXXXXXXXXXXFRNKARLLSQ 459
           +D  +   +G G +G V R     PSGK V  A+K L             F  +   +  
Sbjct: 8   KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 67

Query: 460 IRHRNIVKLYGFCL 473
           + HRN+++LYG  L
Sbjct: 68  LDHRNLIRLYGVVL 81


>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
           In Complex With A Protein Antigen
 pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
           In Complex With A Protein Antigen
 pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
           In Complex With A Protein Antigen
 pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
           In Complex With A Protein Antigen
          Length = 170

 Score = 32.7 bits (73), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 80  QVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINA 139
           QVL L  N I    P  F  L +L  LDL  N+L          LTQLT L++  N + +
Sbjct: 33  QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92

Query: 140 ----SLVNLTSLS 148
               +  NL SL+
Sbjct: 93  IPRGAFDNLRSLT 105



 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 147 LSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSV-GHLTQLNTLNMYSNQINGS 205
           L L+ N +T   P     L ++  LDL  N+L   +P+ V   LTQL  L++  NQ+  S
Sbjct: 35  LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQLK-S 92

Query: 206 IPL-EIGNLKRVEAVKLYDNKLD 227
           IP     NL+ +  + L +N  D
Sbjct: 93  IPRGAFDNLRSLTHIWLLNNPWD 115


>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of
           The Tyrosine Kinase Ack1
 pdb|1U46|B Chain B, Crystal Structure Of The Unphosphorylated Kinase Domain Of
           The Tyrosine Kinase Ack1
 pdb|1U4D|A Chain A, Structure Of The Ack1 Kinase Domain Bound To
           Debromohymenialdisine
 pdb|1U4D|B Chain B, Structure Of The Ack1 Kinase Domain Bound To
           Debromohymenialdisine
 pdb|1U54|B Chain B, Crystal Structures Of The Phosphorylated And
           Unphosphorylated Kinase Domains Of The Cdc42-Associated
           Tyrosine Kinase Ack1 Bound To Amp-Pcp
          Length = 291

 Score = 32.7 bits (73), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 404 EDFHIKYCIGTGGYGSVYRARL--PSGKVV--ALKKLHCXXXXXXXXXXXFRNKARLLSQ 459
           +D  +   +G G +G V R     PSGK V  A+K L             F  +   +  
Sbjct: 18  KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 77

Query: 460 IRHRNIVKLYGFCL 473
           + HRN+++LYG  L
Sbjct: 78  LDHRNLIRLYGVVL 91


>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
          Length = 394

 Score = 32.7 bits (73), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 9/61 (14%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKA-RLLSQIRHRNIVKLYG 470
           IG G +G V++A+L     VA+KK+             F+N+  +++  ++H N+V L  
Sbjct: 48  IGNGSFGVVFQAKLVESDEVAIKKV--------LQDKRFKNRELQIMRIVKHPNVVDLKA 99

Query: 471 F 471
           F
Sbjct: 100 F 100


>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
           The Skp1-Skp2 Complex
 pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
           The Skp1-Skp2 Complex
          Length = 272

 Score = 32.7 bits (73), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 95/239 (39%), Gaps = 36/239 (15%)

Query: 79  LQVLDLSGNEIR-GSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLI 137
           +Q +DLS + I   ++        +L++L L   +L  PI         + TL   SNL+
Sbjct: 57  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPI---------VNTLAKNSNLV 107

Query: 138 NASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNM 197
             +L   +  S           S L  LN     D +E  +   +      +TQLN L+ 
Sbjct: 108 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN-LSG 166

Query: 198 YSNQINGSIPLEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNN-LLRGSIPS 256
           Y   +  S   ++  L R                     C  L+ L+L ++ +L+     
Sbjct: 167 YRKNLQKS---DLSTLVR--------------------RCPNLVHLDLSDSVMLKNDCFQ 203

Query: 257 EIGKLQELYYLDLSHNF-INGKILSELGAIPSIDTVDLSMNNLSGSIPKSVRKVPHLDV 314
           E  +L  L +L LS  + I  + L ELG IP++ T+ +      G++      +PHL +
Sbjct: 204 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI 262


>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain
 pdb|4HZR|B Chain B, Crystal Structure Of Ack1 Kinase Domain
          Length = 277

 Score = 32.7 bits (73), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 404 EDFHIKYCIGTGGYGSVYRARL--PSGKVV--ALKKLHCXXXXXXXXXXXFRNKARLLSQ 459
           +D  +   +G G +G V R     PSGK V  A+K L             F  +   +  
Sbjct: 12  KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 71

Query: 460 IRHRNIVKLYGFCL 473
           + HRN+++LYG  L
Sbjct: 72  LDHRNLIRLYGVVL 85


>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor
           Cis-3-[8-amino-1-(4-
           Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol
          Length = 273

 Score = 32.3 bits (72), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 404 EDFHIKYCIGTGGYGSVYRARL--PSGKVV--ALKKLHCXXXXXXXXXXXFRNKARLLSQ 459
           +D  +   +G G +G V R     PSGK V  A+K L             F  +   +  
Sbjct: 8   KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 67

Query: 460 IRHRNIVKLYGFCL 473
           + HRN+++LYG  L
Sbjct: 68  LDHRNLIRLYGVVL 81


>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
 pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
 pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
 pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
 pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
 pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
          Length = 332

 Score = 32.3 bits (72), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 109/253 (43%), Gaps = 41/253 (16%)

Query: 56  TTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVG 115
           T L + +N I+     +   L  L  L L  N+I       F  L++L+ L +S+N LV 
Sbjct: 57  TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV- 115

Query: 116 PIPSSLGHLTQLTTLNMRSNLIN-------ASLVNLTSLSLHYNNL--TGPIPSTLGHLN 166
            IP +L   + L  L +  N I        + L N+  + +  N L  +G  P     L 
Sbjct: 116 EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL- 172

Query: 167 RIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAVKLYDNKL 226
           ++  L +SE KL G IP  +     LN L++  N+I              +A++L D   
Sbjct: 173 KLNYLRISEAKLTG-IPKDLPE--TLNELHLDHNKI--------------QAIELED--- 212

Query: 227 DGPIPPELMNCSKLMELELGNNLLRGSIPSEIGKLQELYYLDLSHNFINGKILSELGAIP 286
                  L+  SKL  L LG+N +R      +  L  L  L L +N ++ ++ + L  + 
Sbjct: 213 -------LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK 264

Query: 287 SIDTVDLSMNNLS 299
            +  V L  NN++
Sbjct: 265 LLQVVYLHTNNIT 277


>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
           Gleevec
 pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
           5-Amino-3-{[4-
           (Aminosulfonyl)phenyl]amino}-N-(2,
           6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
 pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
 pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
 pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
          Length = 292

 Score = 32.3 bits (72), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 405 DFHIKYCIGTGGYGSVYRARLPSGKV-VALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           D  +K+ +G G YG VY        + VA+K L             F  +A ++ +I+H 
Sbjct: 33  DITMKHKLGGGQYGEVYVGVWKKYSLTVAVKTLK----EDTMEVEEFLKEAAVMKEIKHP 88

Query: 464 NIVKLYGFC 472
           N+V+L G C
Sbjct: 89  NLVQLLGVC 97


>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
 pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
          Length = 307

 Score = 32.3 bits (72), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 400 IEATEDFHIKYCIGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQ 459
           IEA+E   +   IG+G +G+VY+ +      V + K+             FRN+  +L +
Sbjct: 33  IEASE-VMLSTRIGSGSFGTVYKGKWHGDVAVKILKV---VDPTPEQFQAFRNEVAVLRK 88

Query: 460 IRHRNIVKLYGF 471
            RH NI+   G+
Sbjct: 89  TRHVNILLFMGY 100


>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
           Wild Type
 pdb|1ZMU|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
           Wild Type
          Length = 327

 Score = 32.3 bits (72), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 412 IGTGGYGSVYRAR-LPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYG 470
           IG G +  V  AR + +GK VA+K +             FR + R++  + H NIVKL+ 
Sbjct: 22  IGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFR-EVRIMKVLNHPNIVKLFE 80

Query: 471 FCLHRKCMFLI 481
                K ++L+
Sbjct: 81  VIETEKTLYLV 91


>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
           T208aS212A INACTIVE DOUBLE MUTANT
 pdb|1ZMW|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
           T208aS212A INACTIVE DOUBLE MUTANT
          Length = 327

 Score = 32.0 bits (71), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 412 IGTGGYGSVYRAR-LPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYG 470
           IG G +  V  AR + +GK VA+K +             FR + R++  + H NIVKL+ 
Sbjct: 22  IGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFR-EVRIMKVLNHPNIVKLFE 80

Query: 471 FCLHRKCMFLI 481
                K ++L+
Sbjct: 81  VIETEKTLYLV 91


>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
 pdb|2R0I|B Chain B, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
          Length = 327

 Score = 32.0 bits (71), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 412 IGTGGYGSVYRAR-LPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYG 470
           IG G +  V  AR + +GK VA+K +             FR + R++  + H NIVKL+ 
Sbjct: 22  IGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFR-EVRIMKVLNHPNIVKLFE 80

Query: 471 FCLHRKCMFLI 481
                K ++L+
Sbjct: 81  VIETEKTLYLV 91


>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
 pdb|2HAK|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
 pdb|2HAK|C Chain C, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
 pdb|2HAK|D Chain D, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
 pdb|2HAK|E Chain E, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
 pdb|2HAK|F Chain F, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
 pdb|2HAK|G Chain G, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
 pdb|2HAK|H Chain H, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
          Length = 328

 Score = 32.0 bits (71), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 405 DFHIKYCIGTGGYGSVYRAR-LPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           ++ ++  IG G +  V  AR + +G+ VA+K +             FR + R++  + H 
Sbjct: 16  NYRLQKTIGKGNFAKVKLARHVLTGREVAVKIIDKTQLNPTSLQKLFR-EVRIMKILNHP 74

Query: 464 NIVKLYGFCLHRKCMFLI 481
           NIVKL+      K ++L+
Sbjct: 75  NIVKLFEVIETEKTLYLV 92


>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
           BY Mimicking Host Substrates
 pdb|3IEC|B Chain B, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
           BY Mimicking Host Substrates
 pdb|3IEC|C Chain C, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
           BY Mimicking Host Substrates
 pdb|3IEC|D Chain D, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
           BY Mimicking Host Substrates
          Length = 319

 Score = 32.0 bits (71), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 412 IGTGGYGSVYRAR-LPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYG 470
           IG G +  V  AR + +GK VA+K +             FR + R++  + H NIVKL+ 
Sbjct: 15  IGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFR-EVRIMKVLNHPNIVKLFE 73

Query: 471 FCLHRKCMFLI 481
                K ++L+
Sbjct: 74  VIETEKTLYLV 84


>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
           Geranylgeranyl Transferase And Isoprenoid
          Length = 567

 Score = 32.0 bits (71), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 14/89 (15%)

Query: 7   LVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSL-----VGNIPSTLGHLTQLTTLAIA 61
           + HLDLS N L   +PP L  L  LE L  S N+L     V N+P       +L  L + 
Sbjct: 465 VTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENVDGVANLP-------RLQELLLC 516

Query: 62  SNHINVSIPLE-IGNLNFLQVLDLSGNEI 89
           +N +  S  ++ + +   L +L+L GN +
Sbjct: 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545


>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
           Rat Brain
 pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
           Rat Brain
          Length = 567

 Score = 32.0 bits (71), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 14/89 (15%)

Query: 7   LVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSL-----VGNIPSTLGHLTQLTTLAIA 61
           + HLDLS N L   +PP L  L  LE L  S N+L     V N+P       +L  L + 
Sbjct: 465 VTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENVDGVANLP-------RLQELLLC 516

Query: 62  SNHINVSIPLE-IGNLNFLQVLDLSGNEI 89
           +N +  S  ++ + +   L +L+L GN +
Sbjct: 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545


>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
           The Listeria Monocytogenes Inlb Internalin Domain
 pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
           The Listeria Monocytogenes Inlb Internalin Domain
          Length = 289

 Score = 32.0 bits (71), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSN 39
           + RL  L  L L DN +   +P  L RL+KL+NL+LS N
Sbjct: 150 LSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKN 186


>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
          Length = 278

 Score = 32.0 bits (71), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 56/147 (38%), Gaps = 16/147 (10%)

Query: 32  ENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRG 91
           +NL LS N L      +     +L  L ++   I         +L+ L  L L+GN I+ 
Sbjct: 32  KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91

Query: 92  SIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHY 151
                F  L  L+ L   +  L       +GHL  L  LN+  NLI +            
Sbjct: 92  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS------------ 139

Query: 152 NNLTGPIPSTLGHLNRIRILDLSENKL 178
                 +P    +L  +  LDLS NK+
Sbjct: 140 ----FKLPEYFSNLTNLEHLDLSSNKI 162



 Score = 28.5 bits (62), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 59/155 (38%), Gaps = 32/155 (20%)

Query: 28  LSKLENLHLSSNSLVG--NIPSTLGHLTQLTTLAIASNHI-NVSIPLEIGNLNFLQVLDL 84
           LS L+ L     +L    N P  +GHL  L  L +A N I +  +P    NL  L+ LDL
Sbjct: 100 LSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 157

Query: 85  SGNEIRG----------------------SIPSTF---GHLK--RLKSLDLSQNKLVGPI 117
           S N+I+                         P  F   G  K  RLK L L  N+L    
Sbjct: 158 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVP 217

Query: 118 PSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHYN 152
                 LT L  + + +N  + S   +  LS   N
Sbjct: 218 DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 252


>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
           Tlr5
          Length = 407

 Score = 31.6 bits (70), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 98/258 (37%), Gaps = 35/258 (13%)

Query: 4   LRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPS--TLGHLTQLTTLAIA 61
           L +L+ L L  N            L+ LE L L+  +L G + S      LT L  L + 
Sbjct: 78  LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137

Query: 62  SNHINVSIPLEIG-NLNFLQVLDLSGNEIRGSIPSTFGHLK-------RLKSL---DLSQ 110
            N+I    P     N+    VLDL+ N+++        + +       RL S+   D+++
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197

Query: 111 NKLVGPIPSSLGHLTQLTTLNMRSNLINASLVN----------LTSL----------SLH 150
             L      +    T +TTL++  N    S+            + SL          S  
Sbjct: 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257

Query: 151 YNNLTGPIPSTLGHLNR--IRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSIPL 208
           + N   P   T   L    ++  DLS++K+   + S   H T L  L +  N+IN     
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317

Query: 209 EIGNLKRVEAVKLYDNKL 226
               L  ++ + L  N+L
Sbjct: 318 AFWGLTHLKELALDTNQL 335



 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 7/88 (7%)

Query: 79  LQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLIN 138
           ++  DLS ++I   + S F H   L+ L L+QN++     ++   LT L  L + +N + 
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLK 336

Query: 139 A-------SLVNLTSLSLHYNNLTGPIP 159
           +        L +L  + LH N      P
Sbjct: 337 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 364


>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
           Binding Of A Tri-Acylated Lipopeptide
          Length = 549

 Score = 31.6 bits (70), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 12/113 (10%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLG------HLTQ 54
              L +L HLDLS NYL          LS L  L+     L+GN   TLG      HLT+
Sbjct: 70  FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN-----LLGNPYKTLGETSLFSHLTK 124

Query: 55  LTTLAIASNHINVSIPL-EIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSL 106
           L  L + +      I   +   L FL+ L++  ++++   P +   ++ +  L
Sbjct: 125 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 177



 Score = 29.6 bits (65), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 12/200 (6%)

Query: 37  SSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPST 96
           SS SL  +IPS L    +  +L +++N I      ++     LQ L L+ N I      +
Sbjct: 13  SSGSL-NSIPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 69

Query: 97  FGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSN----LINASLVN-LTSLSL-- 149
           F  L  L+ LDLS N L     S    L+ LT LN+  N    L   SL + LT L +  
Sbjct: 70  FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 129

Query: 150 --HYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSIP 207
             + +  T         L  +  L++  + L    P S+  +  ++ L ++  Q    + 
Sbjct: 130 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE 189

Query: 208 LEIGNLKRVEAVKLYDNKLD 227
           + +     VE ++L D  LD
Sbjct: 190 IFVDVTSSVECLELRDTDLD 209


>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
           Hagfish Vlrb.61
 pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
           Hybrid-Md-2-Eritoran Complex
 pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
           Hybrid-Md-2-Eritoran Complex
          Length = 276

 Score = 31.6 bits (70), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 56/147 (38%), Gaps = 16/147 (10%)

Query: 32  ENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRG 91
           +NL LS N L      +     +L  L ++   I         +L+ L  L L+GN I+ 
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 92  SIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHY 151
                F  L  L+ L   +  L       +GHL  L  LN+  NLI +            
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS------------ 138

Query: 152 NNLTGPIPSTLGHLNRIRILDLSENKL 178
                 +P    +L  +  LDLS NK+
Sbjct: 139 ----FKLPEYFSNLTNLEHLDLSSNKI 161



 Score = 28.5 bits (62), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 59/155 (38%), Gaps = 32/155 (20%)

Query: 28  LSKLENLHLSSNSLVG--NIPSTLGHLTQLTTLAIASNHI-NVSIPLEIGNLNFLQVLDL 84
           LS L+ L     +L    N P  +GHL  L  L +A N I +  +P    NL  L+ LDL
Sbjct: 99  LSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 85  SGNEIRG----------------------SIPSTF---GHLK--RLKSLDLSQNKLVGPI 117
           S N+I+                         P  F   G  K  RLK L L  N+L    
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVP 216

Query: 118 PSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHYN 152
                 LT L  + + +N  + S   +  LS   N
Sbjct: 217 DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 251


>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
           Complex
 pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
           Complex
          Length = 279

 Score = 31.6 bits (70), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 56/147 (38%), Gaps = 16/147 (10%)

Query: 32  ENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRG 91
           +NL LS N L      +     +L  L ++   I         +L+ L  L L+GN I+ 
Sbjct: 33  KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92

Query: 92  SIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHY 151
                F  L  L+ L   +  L       +GHL  L  LN+  NLI +            
Sbjct: 93  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS------------ 140

Query: 152 NNLTGPIPSTLGHLNRIRILDLSENKL 178
                 +P    +L  +  LDLS NK+
Sbjct: 141 ----FKLPEYFSNLTNLEHLDLSSNKI 163



 Score = 28.5 bits (62), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 59/155 (38%), Gaps = 32/155 (20%)

Query: 28  LSKLENLHLSSNSLVG--NIPSTLGHLTQLTTLAIASNHI-NVSIPLEIGNLNFLQVLDL 84
           LS L+ L     +L    N P  +GHL  L  L +A N I +  +P    NL  L+ LDL
Sbjct: 101 LSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 158

Query: 85  SGNEIRG----------------------SIPSTF---GHLK--RLKSLDLSQNKLVGPI 117
           S N+I+                         P  F   G  K  RLK L L  N+L    
Sbjct: 159 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVP 218

Query: 118 PSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHYN 152
                 LT L  + + +N  + S   +  LS   N
Sbjct: 219 DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 253


>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
          Length = 612

 Score = 31.6 bits (70), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 70/191 (36%), Gaps = 55/191 (28%)

Query: 1   MGRLRNLVHLDLS--DNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTL 58
           + +L NL  LDLS  D          L  L  L+ L+LS N  +G          QL  L
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELL 404

Query: 59  AIASNHINVSIPLE-IGNLNFLQVLDLS------------------------GNEIR-GS 92
            +A  H++V  P     NL+ L+VL+LS                        GN  + GS
Sbjct: 405 DVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGS 464

Query: 93  IPST--------------------------FGHLKRLKSLDLSQNKLVGPIPSSLGHLTQ 126
           I  T                          F  L+ +  LDLS N L G    +L HL  
Sbjct: 465 ISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKG 524

Query: 127 LTTLNMRSNLI 137
           L  LNM SN I
Sbjct: 525 L-YLNMASNNI 534



 Score = 31.6 bits (70), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 108/249 (43%), Gaps = 26/249 (10%)

Query: 95  STFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLIN-------ASLVNLTSL 147
           STF    R++ LDL+   L G +PS +  +  L  L + +N  +       AS  +L  L
Sbjct: 271 STFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDL 329

Query: 148 SLHYNNLTGPIPS-TLGHLNRIRILDLSENKLVGPIPSSVG--HLTQLNTLNMYSNQING 204
            +  N     + +  L  L  ++ LDLS + +      ++   +L  L  LN+  N+  G
Sbjct: 330 YIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLG 389

Query: 205 SIPLEIGNLKRVEAVKLYDNKL-----DGPIPPELMNCSKLMELELGNNLLRGSIPSEIG 259
              LE    K    ++L D          P  P   N   L  L L + LL  S    + 
Sbjct: 390 ---LEDQAFKECPQLELLDVAFTHLHVKAPHSP-FQNLHLLRVLNLSHCLLDTSNQHLLA 445

Query: 260 KLQELYYLDLSHN-FINGKILSE--LGAIPSIDTVDLSMNNLSGSIPKS---VRKVPHLD 313
            LQ+L +L+L  N F +G I     L  + S++ + LS  NL     ++   +R V HLD
Sbjct: 446 GLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLD 505

Query: 314 VLGNNLEGE 322
           +  N+L G+
Sbjct: 506 LSHNSLTGD 514


>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
          Length = 597

 Score = 31.6 bits (70), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 63/154 (40%), Gaps = 41/154 (26%)

Query: 7   LVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVG----------------NIPSTLG 50
           L  L +S+N L      T    + L+NL LSSN L                  N+ STL 
Sbjct: 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 208

Query: 51  HLTQLTTLAIASNHINVS----------IPLEIGNL-------NF--LQVLDLSGNEIRG 91
               +  L  + N INV           + L+  NL       N+  L  +DLS NE+  
Sbjct: 209 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK 268

Query: 92  SIPSTFGHLKRLKSLDLSQNKLVG------PIPS 119
            +   F  ++RL+ L +S N+LV       PIP+
Sbjct: 269 IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT 302



 Score = 30.0 bits (66), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 130/330 (39%), Gaps = 53/330 (16%)

Query: 8   VHLDL-SDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTL-GHLTQLTTLAIASNHI 65
           VH+D+ + +  +G+   TL      + +    NS +  +P+ L     Q+  L +    I
Sbjct: 32  VHIDMQTQDVYFGFEDITLNN----QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87

Query: 66  NVSIPLEIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLT 125
                      + +Q L +  N IR   P  F ++  L  L L +N L   +P  + H T
Sbjct: 88  EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNT 146

Query: 126 QLTTLNMRSNLINASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSS 185
                             LT+LS+  NNL      T      ++ L LS N+L     S 
Sbjct: 147 P----------------KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL 190

Query: 186 VGHLTQLN-TLNMYSNQINGSIPLEIGNLKRVEAVKLYDNKLDGPIPPE----------- 233
           +  L   N + N+ S     +IP+ +  L   +A     N + GP+  E           
Sbjct: 191 IPSLFHANVSYNLLS---TLAIPIAVEEL---DASHNSINVVRGPVNVELTILKLQHNNL 244

Query: 234 -----LMNCSKLMELELGNNLLRGSIPSEIGKLQELYYLDLSHNFINGKILSELGA-IPS 287
                L+N   L+E++L  N L   +     K+Q L  L +S+N +    L+  G  IP+
Sbjct: 245 TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPT 302

Query: 288 IDTVDLSMNNLSGSIPKSVRKVPHLDVLGN 317
           +  +DLS N+L        R  P  D L N
Sbjct: 303 LKVLDLSHNHLLH----VERNQPQFDRLEN 328


>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase
           Catalytic Subunit From Saccharomyces Cerevisiae
          Length = 318

 Score = 31.6 bits (70), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 404 EDFHIKYCIGTGGYGSVY--RARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIR 461
           +DF I   +GTG +G V+  R+R  +G+  A+K L               ++  +LS + 
Sbjct: 6   QDFQILRTLGTGSFGRVHLIRSR-HNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVT 64

Query: 462 HRNIVKLYGFCLHRKCMFLI 481
           H  I++++G     + +F+I
Sbjct: 65  HPFIIRMWGTFQDAQQIFMI 84


>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
          Length = 278

 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 56/147 (38%), Gaps = 16/147 (10%)

Query: 32  ENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRG 91
           +NL LS N L      +     +L  L ++   I         +L+ L  L L+GN I+ 
Sbjct: 32  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91

Query: 92  SIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHY 151
                F  L  L+ L   +  L       +GHL  L  LN+  NLI +            
Sbjct: 92  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS------------ 139

Query: 152 NNLTGPIPSTLGHLNRIRILDLSENKL 178
                 +P    +L  +  LDLS NK+
Sbjct: 140 ----FKLPEYFSNLTNLEHLDLSSNKI 162



 Score = 28.5 bits (62), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 59/155 (38%), Gaps = 32/155 (20%)

Query: 28  LSKLENLHLSSNSLVG--NIPSTLGHLTQLTTLAIASNHI-NVSIPLEIGNLNFLQVLDL 84
           LS L+ L     +L    N P  +GHL  L  L +A N I +  +P    NL  L+ LDL
Sbjct: 100 LSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 157

Query: 85  SGNEIRG----------------------SIPSTF---GHLK--RLKSLDLSQNKLVGPI 117
           S N+I+                         P  F   G  K  RLK L L  N+L    
Sbjct: 158 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVP 217

Query: 118 PSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHYN 152
                 LT L  + + +N  + S   +  LS   N
Sbjct: 218 DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 252


>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
           Binding Of A Tri-Acylated Lipopeptide
 pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
           Binding Of A Tri-Acylated Lipopeptide
          Length = 353

 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 12/113 (10%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVGNIPSTLG------HLTQ 54
              L +L HLDLS NYL          LS L  L+     L+GN   TLG      HLT+
Sbjct: 96  FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN-----LLGNPYKTLGETSLFSHLTK 150

Query: 55  LTTLAIASNHINVSIPL-EIGNLNFLQVLDLSGNEIRGSIPSTFGHLKRLKSL 106
           L  L + +      I   +   L FL+ L++  ++++   P +   ++ +  L
Sbjct: 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203



 Score = 28.9 bits (63), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 12/200 (6%)

Query: 37  SSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRGSIPST 96
           SS SL  +IPS L    +  +L +++N I      ++     LQ L L+ N I      +
Sbjct: 39  SSGSL-NSIPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 95

Query: 97  FGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSN----LINASLVN-LTSLSL-- 149
           F  L  L+ LDLS N L     S    L+ LT LN+  N    L   SL + LT L +  
Sbjct: 96  FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155

Query: 150 --HYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQINGSIP 207
             + +  T         L  +  L++  + L    P S+  +  ++ L ++  Q    + 
Sbjct: 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE 215

Query: 208 LEIGNLKRVEAVKLYDNKLD 227
           + +     VE ++L D  LD
Sbjct: 216 IFVDVTSSVECLELRDTDLD 235


>pdb|2PZI|A Chain A, Crystal Structure Of Protein Kinase Pkng From
           Mycobacterium Tuberculosis In Complex With
           Tetrahydrobenzothiophene Ax20017
 pdb|2PZI|B Chain B, Crystal Structure Of Protein Kinase Pkng From
           Mycobacterium Tuberculosis In Complex With
           Tetrahydrobenzothiophene Ax20017
          Length = 681

 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 406 FHIKYCIGTGGYGSVYRA--RLPSGKVVALKKL-HCXXXXXXXXXXXFRNKARLLSQIRH 462
           + +K CI  GG G +Y A  R  +G+ V LK L H             R   + L+++ H
Sbjct: 82  YEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAER---QFLAEVVH 138

Query: 463 RNIVKLYGFCLH 474
            +IV+++ F  H
Sbjct: 139 PSIVQIFNFVEH 150


>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
           K82r Mutant
 pdb|1ZMV|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
           K82r Mutant
          Length = 327

 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 412 IGTGGYGSVYRAR-LPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYG 470
           IG G +  V  AR + +GK VA++ +             FR + R++  + H NIVKL+ 
Sbjct: 22  IGKGNFAKVKLARHILTGKEVAVRIIDKTQLNSSSLQKLFR-EVRIMKVLNHPNIVKLFE 80

Query: 471 FCLHRKCMFLI 481
                K ++L+
Sbjct: 81  VIETEKTLYLV 91


>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
 pdb|2QNJ|B Chain B, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
          Length = 328

 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 412 IGTGGYGSVYRAR-LPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYG 470
           IG G +  V  AR + +G+ VA+K +             FR + R++  + H NIVKL+ 
Sbjct: 20  IGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFR-EVRIMKILNHPNIVKLFE 78

Query: 471 FCLHRKCMFLI 481
                K ++LI
Sbjct: 79  VIETEKTLYLI 89


>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
           T208e Double Mutant
 pdb|2WZJ|B Chain B, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
           T208e Double Mutant
 pdb|2WZJ|C Chain C, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
           T208e Double Mutant
 pdb|2WZJ|D Chain D, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
           T208e Double Mutant
 pdb|2WZJ|E Chain E, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
           T208e Double Mutant
 pdb|2WZJ|F Chain F, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
           T208e Double Mutant
          Length = 327

 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 412 IGTGGYGSVYRAR-LPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYG 470
           IG G +  V  AR + +GK VA++ +             FR + R++  + H NIVKL+ 
Sbjct: 22  IGKGNFAKVKLARHILTGKEVAVRIIDKTQLNSSSLQKLFR-EVRIMKVLNHPNIVKLFE 80

Query: 471 FCLHRKCMFLI 481
                K ++L+
Sbjct: 81  VIETEKTLYLV 91


>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
           Tyrosine Kinase Catalytic Domain
 pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
           Tyrosine Kinase Catalytic Domain
 pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
           Tyrosine Kinase Catalytic Domain
 pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
           Tyrosine Kinase Catalytic Domain
 pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
           Catalytic Domain
 pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
           Catalytic Domain
          Length = 264

 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           IG+G +G V+     +   VA+K +             F  +A ++ ++ H  +V+LYG 
Sbjct: 13  IGSGQFGLVHLGYWLNKDKVAIKTIR----EGAMSEEDFIEEAEVMMKLSHPKLVQLYGV 68

Query: 472 CLHRKCMFLIY 482
           CL +  + L++
Sbjct: 69  CLEQAPICLVF 79


>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
           Itk Catalytic Domain With Thienopyrazolylindole
           Inhibitor 090
 pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
           Itk Catalytic Domain With Thienopyrazolylindole
           Inhibitor 090
 pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
           Itk Catalytic Domain With Thienopyrazolylindole
           Inhibitor 542
 pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
           Itk Catalytic Domain With Thienopyrazolylindole
           Inhibitor 542
 pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
           Itk Catalytic Domain With Thienopyrazolylindole
           Inhibitor 542
 pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
           Itk Catalytic Domain With Thienopyrazolylindole
           Inhibitor 542
 pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
           Itk Catalytic Domain With Thienopyrazolylindole
           Inhibitor 477
 pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
           Itk Catalytic Domain With Thienopyrazolylindole
           Inhibitor 477
 pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
           Itk Catalytic Domain With Thienopyrazolylindole
           Inhibitor 469
 pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
           Itk Catalytic Domain With Thienopyrazolylindole
           Inhibitor 469
          Length = 266

 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           IG+G +G V+     +   VA+K +             F  +A ++ ++ H  +V+LYG 
Sbjct: 15  IGSGQFGLVHLGYWLNKDKVAIKTIR----EGAMSEEDFIEEAEVMMKLSHPKLVQLYGV 70

Query: 472 CLHRKCMFLIY 482
           CL +  + L++
Sbjct: 71  CLEQAPICLVF 81


>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
          Length = 279

 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 56/147 (38%), Gaps = 16/147 (10%)

Query: 32  ENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHINVSIPLEIGNLNFLQVLDLSGNEIRG 91
           +NL LS N L      +     +L  L ++   I         +L+ L  L L+GN I+ 
Sbjct: 33  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92

Query: 92  SIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHY 151
                F  L  L+ L   +  L       +GHL  L  LN+  NLI +            
Sbjct: 93  LALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQS------------ 140

Query: 152 NNLTGPIPSTLGHLNRIRILDLSENKL 178
                 +P    +L  +  LDLS NK+
Sbjct: 141 ----FKLPEYFSNLTNLEHLDLSSNKI 163



 Score = 29.3 bits (64), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 60/156 (38%), Gaps = 31/156 (19%)

Query: 25  LGRLSKLENLHLSSNSLVGNIPSTLGHLTQLTTLAIASNHI-NVSIPLEIGNLNFLQVLD 83
           L  L KL  L  +  SL  N P  +GHL  L  L +A N I +  +P    NL  L+ LD
Sbjct: 101 LSSLQKLVALETNLASL-ENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 157

Query: 84  LSGNEIRG----------------------SIPSTF---GHLK--RLKSLDLSQNKLVGP 116
           LS N+I+                         P  F   G  K  RLK L L  N+L   
Sbjct: 158 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSV 217

Query: 117 IPSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHYN 152
                  LT L  + + +N  + S   +  LS   N
Sbjct: 218 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 253


>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
 pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
 pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
           Ro5191614
 pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
           Bms-509744
          Length = 266

 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           IG+G +G V+     +   VA+K +             F  +A ++ ++ H  +V+LYG 
Sbjct: 15  IGSGQFGLVHLGYWLNKDKVAIKTIR----EGAMSEEDFIEEAEVMMKLSHPKLVQLYGV 70

Query: 472 CLHRKCMFLIY 482
           CL +  + L++
Sbjct: 71  CLEQAPICLVF 81


>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor
          Length = 398

 Score = 30.8 bits (68), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 6/101 (5%)

Query: 369 KVEPAETGEITKCADEFAIWNYDGRITFQDIIEATEDFHIKYCIGTGGYGSVYRARLP-S 427
           K EPA T   +  A   A+       +F    +  +++ I   IG G YG V  AR   +
Sbjct: 23  KAEPAHTA-ASVAAKNLALLKAR---SFDVTFDVGDEYEIIETIGNGAYGVVSSARRRLT 78

Query: 428 GKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKL 468
           G+ VA+KK+              R + ++L   +H NI+ +
Sbjct: 79  GQQVAIKKIPNAFDVVTNAKRTLR-ELKILKHFKHDNIIAI 118


>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
           Double Mutant
 pdb|3FE3|B Chain B, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
           Double Mutant
          Length = 328

 Score = 30.8 bits (68), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 412 IGTGGYGSVYRAR-LPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYG 470
           IG G +  V  AR + +G+ VA+K +             FR + R++  + H NIVKL+ 
Sbjct: 23  IGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFR-EVRIMKILNHPNIVKLFE 81

Query: 471 FCLHRKCMFLI 481
                K ++LI
Sbjct: 82  VIETEKTLYLI 92


>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
 pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
 pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
          Length = 269

 Score = 30.8 bits (68), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           IG+G +G V+     +   VA+K +             F  +A ++ ++ H  +V+LYG 
Sbjct: 18  IGSGQFGLVHLGYWLNKDKVAIKTIR----EGAMSEEDFIEEAEVMMKLSHPKLVQLYGV 73

Query: 472 CLHRKCMFLIY 482
           CL +  + L++
Sbjct: 74  CLEQAPICLVF 84


>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor
 pdb|3QGW|B Chain B, Crystal Structure Of Itk Kinase Bound To An Inhibitor
 pdb|3QGY|A Chain A, Crystal Structure Of Itk Inhibitor Complex
 pdb|3QGY|B Chain B, Crystal Structure Of Itk Inhibitor Complex
          Length = 286

 Score = 30.8 bits (68), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           IG+G +G V+     +   VA+K +             F  +A ++ ++ H  +V+LYG 
Sbjct: 35  IGSGQFGLVHLGYWLNKDKVAIKTIK----EGSMSEDDFIEEAEVMMKLSHPKLVQLYGV 90

Query: 472 CLHRKCMFLIY 482
           CL +  + L++
Sbjct: 91  CLEQAPICLVF 101


>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex
           With An Mkk5 Binding Fragment
 pdb|4IC7|D Chain D, Crystal Structure Of The Erk5 Kinase Domain In Complex
           With An Mkk5 Binding Fragment
 pdb|4IC8|A Chain A, Crystal Structure Of The Apo Erk5 Kinase Domain
 pdb|4IC8|B Chain B, Crystal Structure Of The Apo Erk5 Kinase Domain
          Length = 442

 Score = 30.8 bits (68), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 6/101 (5%)

Query: 369 KVEPAETGEITKCADEFAIWNYDGRITFQDIIEATEDFHIKYCIGTGGYGSVYRARLP-S 427
           K EPA T   +  A   A+       +F    +  +++ I   IG G YG V  AR   +
Sbjct: 24  KAEPAHTA-ASVAAKNLALLKAR---SFDVTFDVGDEYEIIETIGNGAYGVVSSARRRLT 79

Query: 428 GKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKL 468
           G+ VA+KK+              R + ++L   +H NI+ +
Sbjct: 80  GQQVAIKKIPNAFDVVTNAKRTLR-ELKILKHFKHDNIIAI 119


>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
           Inactive Double Mutant With Selenomethionine
 pdb|1Y8G|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
           Inactive Double Mutant With Selenomethionine
          Length = 327

 Score = 30.4 bits (67), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 412 IGTGGYGSVYRAR-LPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYG 470
           IG G +  V  AR + +GK VA+K +             FR + R+   + H NIVKL+ 
Sbjct: 22  IGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFR-EVRIXKVLNHPNIVKLFE 80

Query: 471 FCLHRKCMFLI 481
                K ++L+
Sbjct: 81  VIETEKTLYLV 91


>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
          Length = 390

 Score = 30.4 bits (67), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 63/154 (40%), Gaps = 41/154 (26%)

Query: 7   LVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSLVG----------------NIPSTLG 50
           L  L +S+N L      T    + L+NL LSSN L                  N+ STL 
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 202

Query: 51  HLTQLTTLAIASNHINVS----------IPLEIGNL-------NF--LQVLDLSGNEIRG 91
               +  L  + N INV           + L+  NL       N+  L  +DLS NE+  
Sbjct: 203 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK 262

Query: 92  SIPSTFGHLKRLKSLDLSQNKLVG------PIPS 119
            +   F  ++RL+ L +S N+LV       PIP+
Sbjct: 263 IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT 296



 Score = 30.0 bits (66), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 103/257 (40%), Gaps = 47/257 (18%)

Query: 79  LQVLDLSGNEIRGSIPSTFGHLKRLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLIN 138
           +Q L +  N IR   P  F ++  L  L L +N L   +P  + H T             
Sbjct: 95  IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTP------------ 141

Query: 139 ASLVNLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLN-TLNM 197
                LT+LS+  NNL      T      ++ L LS N+L     S +  L   N + N+
Sbjct: 142 ----KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL 197

Query: 198 YSNQINGSIPLEIGNLKRVEAVKLYDNKLDGPIPPE----------------LMNCSKLM 241
            S     +IP+ +  L   +A     N + GP+  E                L+N   L+
Sbjct: 198 LS---TLAIPIAVEEL---DASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLV 251

Query: 242 ELELGNNLLRGSIPSEIGKLQELYYLDLSHNFINGKILSELGA-IPSIDTVDLSMNNLSG 300
           E++L  N L   +     K+Q L  L +S+N +    L+  G  IP++  +DLS N+L  
Sbjct: 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLL- 308

Query: 301 SIPKSVRKVPHLDVLGN 317
                 R  P  D L N
Sbjct: 309 ---HVERNQPQFDRLEN 322


>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits
 pdb|3V5W|A Chain A, Human G Protein-Coupled Receptor Kinase 2 In Complex With
           Soluble Gbetagamma Subunits And Paroxetine
          Length = 689

 Score = 30.4 bits (67), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 405 DFHIKYCIGTGGYGSVYRAR-LPSGKVVALKKL 436
           DF +   IG GG+G VY  R   +GK+ A+K L
Sbjct: 190 DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCL 222


>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
           (Soak)
 pdb|3KRX|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
           (Co-Crystal)
          Length = 688

 Score = 30.4 bits (67), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 405 DFHIKYCIGTGGYGSVYRAR-LPSGKVVALKKL 436
           DF +   IG GG+G VY  R   +GK+ A+K L
Sbjct: 189 DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCL 221


>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
 pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
          Length = 281

 Score = 30.4 bits (67), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           IG+G +G+VY+ +      VA+K L+            F+N+  +L + RH NI+   G+
Sbjct: 21  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQA-FKNEVGVLRKTRHVNILLFMGY 77


>pdb|4H58|A Chain A, Braf In Complex With Compound 3
 pdb|4H58|B Chain B, Braf In Complex With Compound 3
 pdb|4H58|C Chain C, Braf In Complex With Compound 3
          Length = 275

 Score = 30.4 bits (67), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           IG+G +G+VY+ +      VA+K L+            F+N+  +L + RH NI+   G+
Sbjct: 16  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQA-FKNEVGVLRKTRHVNILLFMGY 72


>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
 pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
          Length = 276

 Score = 30.4 bits (67), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           IG+G +G+VY+ +      VA+K L+            F+N+  +L + RH NI+   G+
Sbjct: 16  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQA-FKNEVGVLRKTRHVNILLFMGY 72


>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
 pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
          Length = 276

 Score = 30.4 bits (67), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           IG+G +G+VY+ +      VA+K L+            F+N+  +L + RH NI+   G+
Sbjct: 16  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQA-FKNEVGVLRKTRHVNILLFMGY 72


>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled
           Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
           And Gamma 2 Subunits
 pdb|1YM7|A Chain A, G Protein-Coupled Receptor Kinase 2 (Grk2)
 pdb|1YM7|B Chain B, G Protein-Coupled Receptor Kinase 2 (Grk2)
 pdb|1YM7|C Chain C, G Protein-Coupled Receptor Kinase 2 (Grk2)
 pdb|1YM7|D Chain D, G Protein-Coupled Receptor Kinase 2 (Grk2)
 pdb|2BCJ|A Chain A, Crystal Structure Of G Protein-coupled Receptor Kinase 2
           In Complex With Galpha-q And Gbetagamma Subunits
 pdb|3UZS|A Chain A, Structure Of The C13.28 Rna Aptamer Bound To The G
           Protein-Coupled Receptor Kinase 2-Heterotrimeric G
           Protein Beta 1 And Gamma 2 Subunit Complex
 pdb|3UZT|A Chain A, Structure Of The C13.18 Rna Aptamer In Complex With G
           Protein-Coupled Receptor Kinase 2
          Length = 689

 Score = 30.4 bits (67), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 405 DFHIKYCIGTGGYGSVYRAR-LPSGKVVALKKL 436
           DF +   IG GG+G VY  R   +GK+ A+K L
Sbjct: 190 DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCL 222


>pdb|1NWL|A Chain A, Crystal Structure Of The Ptp1b Complexed With
           Sp7343-Sp7964, A Ptyr Mimetic
 pdb|1NWE|A Chain A, Ptp1b R47c Modified At C47 With N-[4-(2-{2-[3-(2-Bromo-
           Acetylamino)-Propionylamino]-3-Hydroxy-Propionylamino}-
           Ethyl)-Phenyl]-Oxalamic Acid
          Length = 298

 Score = 30.4 bits (67), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T+GH 
Sbjct: 65  DYINASLIKMEEAQRSYILTQGPLPNTVGHF 95


>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits
 pdb|3PVU|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
           Selective Kinase Inhibitor (Cmpd101)
 pdb|3PVW|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
           Selective Kinase Inhibitor (Cmpd103a)
          Length = 695

 Score = 30.4 bits (67), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 405 DFHIKYCIGTGGYGSVYRAR-LPSGKVVALKKL 436
           DF +   IG GG+G VY  R   +GK+ A+K L
Sbjct: 190 DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCL 222


>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
           Tetrahydronaphthalene Inhibitor
 pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
           Tetrahydronaphthalene Inhibitor
          Length = 282

 Score = 30.4 bits (67), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           IG+G +G+VY+ +      VA+K L+            F+N+  +L + RH NI+   G+
Sbjct: 18  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQA-FKNEVGVLRKTRHVNILLFMGY 74


>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer
          Length = 319

 Score = 30.4 bits (67), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 404 EDFHIKYCIGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHR 463
           E   I   IG G +G VY  R      + L  +             F+ +     Q RH 
Sbjct: 33  EQLEIGELIGKGRFGQVYHGRWHGEVAIRLIDIE---RDNEDQLKAFKREVMAYRQTRHE 89

Query: 464 NIVKLYGFCL 473
           N+V   G C+
Sbjct: 90  NVVLFMGACM 99


>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
           A [1, 3]thiazolo[5,4-B]pyridine Derivative
 pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
           A [1, 3]thiazolo[5,4-B]pyridine Derivative
          Length = 284

 Score = 30.4 bits (67), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           IG+G +G+VY+ +      VA+K L+            F+N+  +L + RH NI+   G+
Sbjct: 21  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQA-FKNEVGVLRKTRHVNILLFMGY 77


>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
           Triazine Derivatives As Potent, Selective Tie-2
           Inhibitors
 pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
           Triazine Derivatives As Potent, Selective Tie-2
           Inhibitors
 pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
           2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
 pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
           2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
 pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
           Complexed With Inhibitor Cep11207
          Length = 317

 Score = 30.4 bits (67), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 21/97 (21%)

Query: 388 WNYDGRITFQDIIEATEDFHIKYCIGTGGYGSVYRARLPSGKV---VALKKLHCXXXXXX 444
           WN    I FQD+I            G G +G V +AR+    +    A+K++        
Sbjct: 14  WN---DIKFQDVI------------GEGNFGQVLKARIKKDGLRMDAAIKRMK--EYASK 56

Query: 445 XXXXXFRNKARLLSQIRHR-NIVKLYGFCLHRKCMFL 480
                F  +  +L ++ H  NI+ L G C HR  ++L
Sbjct: 57  DDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYL 93


>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
          Length = 452

 Score = 30.4 bits (67), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 9/177 (5%)

Query: 143 NLTSLSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGHLTQLNTLNMYSNQI 202
           N   L+L  NN+      T  HL+ + +L L  N +      +   L  LNTL ++ N +
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 203 NGSIPLEIGNLKRVEAVKLYDNKLDGPIPPELMN-CSKLMELELGNNLLRGSIPSEIGKL 261
                     L ++  + L +N ++  IP    N    LM L+LG  L +    SE G  
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLG-ELKKLEYISE-GAF 192

Query: 262 QELY---YLDLSHNFINGKILSELGAIPSIDTVDLSMNNLSGSIPKSVRKVPHLDVL 315
           + L+   YL+L     N K +  L  +  ++ +++S N+     P S   +  L  L
Sbjct: 193 EGLFNLKYLNLG--MCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247


>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
           Thiazolopyrimidine Inhibitor
          Length = 324

 Score = 30.4 bits (67), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 21/97 (21%)

Query: 388 WNYDGRITFQDIIEATEDFHIKYCIGTGGYGSVYRARLPSGKV---VALKKLHCXXXXXX 444
           WN    I FQD+I            G G +G V +AR+    +    A+K++        
Sbjct: 21  WN---DIKFQDVI------------GEGNFGQVLKARIKKDGLRMDAAIKRMK--EYASK 63

Query: 445 XXXXXFRNKARLLSQIRHR-NIVKLYGFCLHRKCMFL 480
                F  +  +L ++ H  NI+ L G C HR  ++L
Sbjct: 64  DDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYL 100


>pdb|1FVR|A Chain A, Tie2 Kinase Domain
 pdb|1FVR|B Chain B, Tie2 Kinase Domain
          Length = 327

 Score = 30.4 bits (67), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 21/97 (21%)

Query: 388 WNYDGRITFQDIIEATEDFHIKYCIGTGGYGSVYRARLPSGKV---VALKKLHCXXXXXX 444
           WN    I FQD+I            G G +G V +AR+    +    A+K++        
Sbjct: 24  WN---DIKFQDVI------------GEGNFGQVLKARIKKDGLRMDAAIKRMK--EYASK 66

Query: 445 XXXXXFRNKARLLSQIRHR-NIVKLYGFCLHRKCMFL 480
                F  +  +L ++ H  NI+ L G C HR  ++L
Sbjct: 67  DDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYL 103


>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
 pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
          Length = 280

 Score = 30.4 bits (67), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           IG+G +G+VY+ +      VA+K L+            F+N+  +L + RH NI+   G+
Sbjct: 20  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQA-FKNEVGVLRKTRHVNILLFMGY 76


>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
           Plx3203
 pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
           Plx3203
          Length = 292

 Score = 30.0 bits (66), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           IG+G +G+VY+ +      VA+K L+            F+N+  +L + RH NI+   G+
Sbjct: 32  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQA-FKNEVGVLRKTRHVNILLFMGY 88


>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
           Inhibitor
 pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
           Inhibitor
          Length = 306

 Score = 30.0 bits (66), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           IG+G +G+VY+ +      VA+K L+            F+N+  +L + RH NI+   G+
Sbjct: 43  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQA-FKNEVGVLRKTRHVNILLFMGY 99


>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
           Aminoisoquinoline Inhibitor
 pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
           Aminoisoquinoline Inhibitor
          Length = 300

 Score = 30.0 bits (66), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           IG+G +G+VY+ +      VA+K L+            F+N+  +L + RH NI+   G+
Sbjct: 36  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQA-FKNEVGVLRKTRHVNILLFMGY 92


>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
           Plx4032
 pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
           Plx4032
          Length = 289

 Score = 30.0 bits (66), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           IG+G +G+VY+ +      VA+K L+            F+N+  +L + RH NI+   G+
Sbjct: 32  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQA-FKNEVGVLRKTRHVNILLFMGY 88


>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
           Dihydroquinazoline Inhibitor
 pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
           Dihydroquinazoline Inhibitor
          Length = 307

 Score = 30.0 bits (66), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           IG+G +G+VY+ +      VA+K L+            F+N+  +L + RH NI+   G+
Sbjct: 44  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQA-FKNEVGVLRKTRHVNILLFMGY 100


>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
 pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
 pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
           Selective B- Raf Inhibitors
 pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
           Selective B- Raf Inhibitors
 pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
           Inhibitor
 pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
           Inhibitor
 pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
           Furopyridine Inhibitor
 pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
           Furopyridine Inhibitor
 pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
           With A Non- Oxime Furopyridine Inhibitor
 pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
           With A Non- Oxime Furopyridine Inhibitor
 pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
           Non-Oxime Furopyridine Inhibitor
 pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
           Non-Oxime Furopyridine Inhibitor
 pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
           Complex With Organometallic Inhibitor Cns292
 pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
           Complex With Organometallic Inhibitor Cns292
 pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
 pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
 pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
           Pyrazolopyridine Inhibitor
 pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
           Pyrazolopyridine Inhibitor
 pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
           Benzamide Inhibitor
 pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
           Benzamide Inhibitor
 pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
           Methoxypyrazolopyridinyl Benzamide Inhibitor
 pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
           Methoxypyrazolopyridinyl Benzamide Inhibitor
 pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
 pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
 pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
           Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
 pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
           Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
 pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
           Pyrazolopyridine Inhibitor
 pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
           Pyrazolopyridine Inhibitor
          Length = 307

 Score = 30.0 bits (66), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           IG+G +G+VY+ +      VA+K L+            F+N+  +L + RH NI+   G+
Sbjct: 44  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQA-FKNEVGVLRKTRHVNILLFMGY 100


>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
 pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
          Length = 314

 Score = 30.0 bits (66), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 404 EDFHIKYCIGTGGYGSVYRA-RLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRH 462
           E F +   +G G YGSVY+A    +G++VA+K++                +  ++ Q   
Sbjct: 29  EVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEII-----KEISIMQQCDS 83

Query: 463 RNIVKLYG 470
            ++VK YG
Sbjct: 84  PHVVKYYG 91


>pdb|3A5K|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
          Length = 304

 Score = 30.0 bits (66), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 71  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 101


>pdb|2FJM|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
           With Compound 2
 pdb|2FJM|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
           With Compound 2
          Length = 310

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 77  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 107


>pdb|1BZH|A Chain A, Cyclic Peptide Inhibitor Of Human Ptp1b
          Length = 298

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 65  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 95


>pdb|1G7G|A Chain A, Human Ptp1b Catalytic Domain Complexes With Pnu179326
 pdb|1JF7|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177836
 pdb|1JF7|B Chain B, Human Ptp1b Catalytic Domain Complexed With Pnu177836
 pdb|1KAK|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
 pdb|1KAV|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
 pdb|1T48|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
 pdb|1T49|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
 pdb|1T4J|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
 pdb|2F6T|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
           Inhibitors
 pdb|2F6V|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
           Inhibitors
 pdb|2F6W|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
           Inhibitors
 pdb|2F6Y|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
           Inhibitors
 pdb|2F6Z|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
           Inhibitors
 pdb|2F70|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
           Inhibitors
 pdb|2F71|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
           Inhibitors
          Length = 298

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 65  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 95


>pdb|1G7F|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177496
          Length = 298

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 65  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 95


>pdb|2CM2|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (P212121)
 pdb|2CM3|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (C2)
 pdb|2CM3|B Chain B, Structure Of Protein Tyrosine Phosphatase 1b (C2)
 pdb|2CMB|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
           Phosphatase 1b By Isothiazolidinone Heterocyclic
           Phosphonate Mimetics
 pdb|2CMC|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
           Phosphatase 1b By Isothiazolidinone Heterocyclic
           Phosphonate Mimetics
 pdb|2CNE|A Chain A, Structural Insights Into The Design Of Nonpeptidic
           Isothiazolidinone-Containing Inhibitors Of Protein
           Tyrosine Phosphatase 1b
          Length = 304

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 71  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 101


>pdb|1A5Y|A Chain A, Protein Tyrosine Phosphatase 1b Cysteinyl-Phosphate
           Intermediate
          Length = 330

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 65  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 95


>pdb|1BZJ|A Chain A, Human Ptp1b Complexed With Tpicooh
          Length = 297

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 64  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 94


>pdb|1Q6J|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
           With Compound 2
 pdb|1Q6M|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
           With Compound 3
 pdb|1Q6N|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
           With Compound 4
 pdb|1Q6N|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
           With Compound 4
 pdb|1Q6P|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
           With Compound 6
 pdb|1Q6P|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
           With Compound 6
 pdb|1Q6S|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
           With Compound 9
 pdb|1Q6S|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
           With Compound 9
 pdb|1Q6T|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
           With Compound 11
 pdb|1Q6T|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
           With Compound 11
 pdb|2FJN|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
           With Compound 2
 pdb|2FJN|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
           With Compound 2
          Length = 310

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 77  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 107


>pdb|1ECV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
           Complexed With 5-Iodo-2-(Oxalyl-Amino)-Benzoic Acid
 pdb|1C83|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
           Complexed With 6-(Oxalyl-Amino)-1h-Indole-5-Carboxylic
           Acid
 pdb|1C84|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
           Complexed With 3-(Oxalyl-Amino)-Naphthalene-2-Carboxlic
           Acid
 pdb|1C85|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
           Complexed With 2-(Oxalyl-Amino)-Benzoic Acid
 pdb|1C87|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
           Complexed With
           2-(Oxalyl-Amino-4,7-Dihydro-5h-Thieno[2,3-
           C]pyran-3-Carboxylic Acid
 pdb|1C88|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
           Complexed With 2-(Oxalyl-Amino)-4,5,6,7-Tetrahydro-
           Thieno[2,3-C]pyridine-3-Carboxylic Acid
          Length = 298

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 65  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 95


>pdb|3ZV2|A Chain A, Human Protein-Tyrosine Phosphatase 1b C215a, S216a Mutant
          Length = 320

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 65  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 95


>pdb|2AZR|A Chain A, Crystal Structure Of Ptp1b With Bicyclic Thiophene
           Inhibitor
 pdb|2B07|A Chain A, Crystal Structure Of Ptp1b With Tricyclic Thiophene
           Inhibitor.
 pdb|2H4G|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
           Inhibitor
 pdb|2H4K|A Chain A, Crystal Structure Of Ptp1b With A Monocyclic Thiophene
           Inhibitor
 pdb|2HB1|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
           Inhibitor
 pdb|2QBP|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
 pdb|2QBQ|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
 pdb|2QBR|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
 pdb|2QBS|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
 pdb|2ZMM|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
 pdb|2ZN7|A Chain A, Crystal Structures Of Ptp1b-Inhibitor Complexes
          Length = 299

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 65  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 95


>pdb|1GFY|A Chain A, Residue 259 Is A Key Determinant Of Substrate Specificity
           Of Protein-Tyrosine Phosphatase 1b And Alpha
          Length = 298

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 65  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 95


>pdb|3SME|A Chain A, Structure Of Ptp1b Inactivated By H2o2BICARBONATE
          Length = 300

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 67  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 97


>pdb|2NT7|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
 pdb|2NTA|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
          Length = 299

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 65  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 95


>pdb|1G1F|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
           Complexed With A Tri-Phosphorylated Peptide (Rdi(Ptr)
           Etd(Ptr)(Ptr)rk) From The Insulin Receptor Kinase
 pdb|1G1G|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
           Complexed With A Mono-Phosphorylated Peptide (Etdy(Ptr)
           Rkggkgll) From The Insulin Receptor Kinase
 pdb|1G1H|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
           Complexed With A Bis-Phosphorylated Peptide
           (Etd(Ptr)(Ptr) Rkggkgll) From The Insulin Receptor
           Kinase
 pdb|2B4S|A Chain A, Crystal Structure Of A Complex Between Ptp1b And The
           Insulin Receptor Tyrosine Kinase
 pdb|2B4S|C Chain C, Crystal Structure Of A Complex Between Ptp1b And The
           Insulin Receptor Tyrosine Kinase
          Length = 298

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 65  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 95


>pdb|4I8N|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
           Complex With An Inhibitor
           [(4-{(2s)-2-(1,3-Benzoxazol-2-Yl)-2-[(4-Fluorophenyl)
           Sulfamoyl]ethyl}phenyl)amino](Oxo)acetic Acid
          Length = 354

 Score = 29.6 bits (65), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 99  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 129


>pdb|1PA1|A Chain A, Crystal Structure Of The C215d Mutant Of Protein Tyrosine
           Phosphatase 1b
          Length = 310

 Score = 29.6 bits (65), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 77  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 107


>pdb|1BZC|A Chain A, Human Ptp1b Catalytic Domain Complexed With Tpi
          Length = 321

 Score = 29.6 bits (65), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 65  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 95


>pdb|3QKP|A Chain A, Protein Tyrosine Phosphatase 1b - Apo W179f Mutant With
           Open Wpd-Loop
 pdb|3QKQ|A Chain A, Protein Tyrosine Phosphatase 1b - W179f Mutant Bound With
           Vanadate
          Length = 321

 Score = 29.6 bits (65), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 65  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 95


>pdb|2CMA|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
           Phosphatase 1b By Isothiazolidinone Heterocyclic
           Phosphonate Mimetics
 pdb|3A5J|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
          Length = 327

 Score = 29.6 bits (65), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 71  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 101


>pdb|1NL9|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
           Inhibitor Compound 12 Using A Linked-Fragment Strategy
 pdb|1NNY|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
           Inhibitor Compound 23 Using A Linked-fragment Strategy
 pdb|1NO6|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
           Inhibitor Compound 5 Using A Linked-fragment Strategy
 pdb|1NZ7|A Chain A, Potent, Selective Inhibitors Of Protein Tyrosine
           Phosphatase 1b Using A Second Phosphotyrosine Binding
           Site, Complexed With Compound 19.
 pdb|1ONY|A Chain A, Oxalyl-aryl-amino Benzoic Acid Inhibitors Of Ptp1b,
           Compound 17
 pdb|1ONZ|A Chain A, Oxalyl-Aryl-Amino Benzoic Acid Inhibitors Of Ptp1b,
           Compound 8b
 pdb|1OEM|X Chain X, Ptp1b With The Catalytic Cysteine Oxidized To A
           Sulfenyl-Amide Bond
 pdb|1OES|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
 pdb|1PXH|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b With
           Potent And Selective Bidentate Inhibitor Compound 2
 pdb|1PH0|A Chain A, Non-Carboxylic Acid-Containing Inhibitor Of Ptp1b
           Targeting The Second Phosphotyrosine Site
 pdb|1PYN|A Chain A, Dual-Site Potent, Selective Protein Tyrosine Phosphatase
           1b Inhibitor Using A Linked Fragment Strategy And A
           Malonate Head On The First Site
 pdb|1Q1M|A Chain A, A Highly Efficient Approach To A Selective And Cell Active
           Ptp1b Inhibitors
 pdb|1QXK|A Chain A, Monoacid-Based, Cell Permeable, Selective Inhibitors Of
           Protein Tyrosine Phosphatase 1b
 pdb|1SUG|A Chain A, 1.95 A Structure Of Apo Protein Tyrosine Phosphatase 1b
 pdb|1XBO|A Chain A, Ptp1b Complexed With Isoxazole Carboxylic Acid
 pdb|1WAX|A Chain A, Protein Tyrosine Phosphatase 1b With Active Site Inhibitor
 pdb|2BGD|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
           Inhibitors
 pdb|2BGE|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
           Inhibitors
 pdb|2CM7|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
           Phosphatase 1b By Isothiazolidinone Heterocyclic
           Phosphonate Mimetics
 pdb|2CM8|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
           Phosphatase 1b By Isothiazolidinone Heterocyclic
           Phosphonate Mimetics
 pdb|2CNF|A Chain A, Structural Insights Into The Design Of Nonpeptidic
           Isothiazolidinone-Containing Inhibitors Of Protein
           Tyrosine Phosphatase 1b
 pdb|2CNG|A Chain A, Structural Insights Into The Design Of Nonpeptidic
           Isothiazolidinone-Containing Inhibitors Of Protein
           Tyrosine Phosphatase 1b
 pdb|2CNH|A Chain A, Structural Insights Into The Design Of Nonpeptidic
           Isothiazolidinone-Containing Inhibitors Of Protein
           Tyrosine Phosphatase 1b
 pdb|2CNI|A Chain A, Structural Insights Into The Design Of Nonpeptidic
           Isothiazolidinone-Containing Inhibitors Of Protein
           Tyrosine Phosphatase 1b
 pdb|2HNP|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
 pdb|2HNQ|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
 pdb|2VEU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
           Complex With An Isothiazolidinone-Containing Inhibitor
 pdb|2VEV|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
           Complex With An Isothiazolidinone-Containing Inhibitor
 pdb|2VEW|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
           Complex With An Isothiazolidinone-Containing Inhibitor
 pdb|2VEX|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
           Complex With An Isothiazolidinone-Containing Inhibitor
 pdb|2VEY|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
           Complex With An Isothiazolidinone-Containing Inhibitor
 pdb|3D9C|A Chain A, Crystal Structure Ptp1b Complex With Aryl Seleninic Acid
 pdb|3EAX|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule
           Compound Lzp-6
 pdb|3EB1|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule
           Inhibitor Lzp-25
 pdb|3I7Z|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog
           Fo First Catalytic Step
 pdb|3I80|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog
           Fo Second Catalytic Step
          Length = 321

 Score = 29.6 bits (65), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 65  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 95


>pdb|1I57|A Chain A, Crystal Structure Of Apo Human Ptp1b (C215s) Mutant
          Length = 310

 Score = 29.6 bits (65), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 77  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 107


>pdb|1L8G|A Chain A, Crystal Structure Of Ptp1b Complexed With 7-(1,1-dioxo-1h-
           Benzo[d]isothiazol-3-yloxymethyl)-2-(oxalyl-amino)-4,7-
           Dihydro-5h-thieno[2,3-c]pyran-3-carboxylic Acid
          Length = 321

 Score = 29.6 bits (65), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 65  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 95


>pdb|1PTV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
           Complexed With Phosphotyrosine
          Length = 321

 Score = 29.6 bits (65), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 65  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 95


>pdb|1OEO|X Chain X, Ptp1b With The Catalytic Cysteine Oxidized To Sulfonic
           Acid
 pdb|1OET|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
 pdb|1OEU|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
 pdb|1OEV|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
          Length = 321

 Score = 29.6 bits (65), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 65  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 95


>pdb|1LQF|A Chain A, Structure Of Ptp1b In Complex With A Peptidic
           Bisphosphonate Inhibitor
 pdb|1LQF|B Chain B, Structure Of Ptp1b In Complex With A Peptidic
           Bisphosphonate Inhibitor
 pdb|1LQF|C Chain C, Structure Of Ptp1b In Complex With A Peptidic
           Bisphosphonate Inhibitor
 pdb|1LQF|D Chain D, Structure Of Ptp1b In Complex With A Peptidic
           Bisphosphonate Inhibitor
          Length = 295

 Score = 29.6 bits (65), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 77  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 107


>pdb|3EU0|A Chain A, Crystal Structure Of The S-Nitrosylated Cys215 Of Ptp1b
          Length = 327

 Score = 29.6 bits (65), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 71  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 101


>pdb|1PTU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
           Complexed With Phosphotyrosine-Containing Hexa-Peptide
           (Dadepyl-Nh2)
 pdb|1PTT|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
           Complexed With Phosphotyrosine-Containing Tetra-Peptide
           (Ac-Depyl-Nh2)
          Length = 321

 Score = 29.6 bits (65), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 65  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 95


>pdb|1EEN|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
           Complexed With Acetyl-D-A-D-Bpa-Ptyr-L-I-P-Q-Q-G
 pdb|1EEO|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
           Complexed With Acetyl-E-L-E-F-Ptyr-M-D-Y-E-Nh2
 pdb|1PTY|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
           Complexed With Two Phosphotyrosine Molecules
          Length = 321

 Score = 29.6 bits (65), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 65  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 95


>pdb|1AAX|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
           Complexed With Two Bis(Para-Phosphophenyl)methane (Bppm)
           Molecules
          Length = 321

 Score = 29.6 bits (65), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 65  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 95


>pdb|1C86|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
           (R47v, D48n) Complexed With
           2-(Oxalyl-Amino-4,7-Dihydro-5h-
           Thieno[2,3-C]pyran-3-Carboxylic Acid
          Length = 298

 Score = 29.6 bits (65), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 65  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 95


>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed
           With Imidazo[1,5-A]quinoxaline
          Length = 267

 Score = 29.6 bits (65), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 412 IGTGGYGSVYRARLPSGKVVALKKLHCXXXXXXXXXXXFRNKARLLSQIRHRNIVKLYGF 471
           IG+G +G V+     +   VA+K +             F  +A ++ ++ H  +V+LYG 
Sbjct: 16  IGSGQFGLVHLGYWLNKDKVAIKTIR----EGAMSEEDFIEEAEVMMKLSHPKLVQLYGV 71

Query: 472 CLHRKCMFLI 481
           CL +  + L+
Sbjct: 72  CLEQAPICLV 81


>pdb|2F6F|A Chain A, The Structure Of The S295f Mutant Of Human Ptp1b
          Length = 302

 Score = 29.6 bits (65), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 69  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 99


>pdb|3CWE|A Chain A, Ptp1b In Complex With A Phosphonic Acid Inhibitor
          Length = 290

 Score = 29.6 bits (65), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 135 NLINASLVNLTSLSLHYNNLTGPIPSTLGHL 165
           + INASL+ +      Y    GP+P+T GH 
Sbjct: 72  DYINASLIKMEEAQRSYILTQGPLPNTCGHF 102


>pdb|3N9X|A Chain A, Crystal Structure Of Map Kinase From Plasmodium Berghei,
           Pb000659.00.0
 pdb|3N9X|B Chain B, Crystal Structure Of Map Kinase From Plasmodium Berghei,
           Pb000659.00.0
          Length = 432

 Score = 29.6 bits (65), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 396 FQDI--IEATEDFHIKYCIGTGGYGSVYRARLP-SGKVVALKKLHCXXXXXXXXXXXFRN 452
           FQ I  +   +++ IK+ IG G YG VY A    + K VA+KK++             R 
Sbjct: 16  FQGIKNVHVPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILR- 74

Query: 453 KARLLSQIRHRNIVKLYGFCL 473
           +  +L++++   I++LY   +
Sbjct: 75  EITILNRLKSDYIIRLYDLII 95


>pdb|3NIE|A Chain A, Crystal Structure Of Pf11_0147
 pdb|3NIE|B Chain B, Crystal Structure Of Pf11_0147
          Length = 429

 Score = 29.6 bits (65), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 400 IEATEDFHIKYCIGTGGYGSVYRARLPSG-KVVALKKL 436
           ++  +++ IK+ IG G YG VY A   +  K VA+KK+
Sbjct: 24  VKVPDNYEIKHLIGRGSYGYVYLAYDKNANKNVAIKKV 61


>pdb|1N9E|A Chain A, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
 pdb|1N9E|B Chain B, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
 pdb|1N9E|C Chain C, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
 pdb|1N9E|D Chain D, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
          Length = 787

 Score = 29.3 bits (64), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 179 VGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAV 219
           VGP+P  V   T +  L+ Y+      +P E+G+L R+++ 
Sbjct: 142 VGPLP--VSDETTIEPLSFYNTNGKSKLPFEVGHLDRIKSA 180


>pdb|1RKY|A Chain A, Pplo + Xe
 pdb|1W7C|A Chain A, Pplo At 1.23 Angstroms
          Length = 747

 Score = 29.3 bits (64), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 179 VGPIPSSVGHLTQLNTLNMYSNQINGSIPLEIGNLKRVEAV 219
           VGP+P  V   T +  L+ Y+      +P E+G+L R+++ 
Sbjct: 102 VGPLP--VSDETTIEPLSFYNTNGKSKLPFEVGHLDRIKSA 140


>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
          Length = 213

 Score = 29.3 bits (64), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSN 39
           + RL  L  L L DN +   +P  L  L+KL+NL+LS N
Sbjct: 147 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 183


>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
 pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
 pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
 pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
          Length = 606

 Score = 29.3 bits (64), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 7/156 (4%)

Query: 147 LSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGH-LTQLNTLNMYSNQINGS 205
           + L +N L      +  + + ++ LDLS  + +  I     H L  L+ L +  N I   
Sbjct: 37  IDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQSF 95

Query: 206 IPLEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGS-IPSEIGKLQEL 264
            P     L  +E +   + KL       +     L +L + +N +    +P+    L  L
Sbjct: 96  SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155

Query: 265 YYLDLSHNFINGKILSELGAI---PSID-TVDLSMN 296
            ++DLS+N+I    +++L  +   P ++ ++D+S+N
Sbjct: 156 VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191


>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
 pdb|1ZKQ|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
          Length = 517

 Score = 28.9 bits (63), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 18/93 (19%)

Query: 246 GNNLLRGSIPSEIGKLQELYYLDLSHNFINGK--------ILSELGAIPSIDTVDLSMNN 297
           G   L+G +PS I KL          +  +GK        +L  +G +P   T++L    
Sbjct: 265 GTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAG 324

Query: 298 LSGSIPKSVR---------KVPHLDVLGNNLEG 321
           +S + PK+ +          VPH+  +G+  EG
Sbjct: 325 IS-TNPKNQKIIVDAQEATSVPHIYAIGDVAEG 356


>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin
           Reductase, C- Terminal 3-Residue Truncation
          Length = 488

 Score = 28.9 bits (63), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 18/93 (19%)

Query: 246 GNNLLRGSIPSEIGKLQELYYLDLSHNFINGK--------ILSELGAIPSIDTVDLSMNN 297
           G   L+G +PS I KL          +  +GK        +L  +G +P   T++L    
Sbjct: 239 GTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAG 298

Query: 298 LSGSIPKSVR---------KVPHLDVLGNNLEG 321
           +S + PK+ +          VPH+  +G+  EG
Sbjct: 299 IS-TNPKNQKIIVDAQEATSVPHIYAIGDVAEG 330


>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
           Internalin Domain With An Additional Leucine Rich Repeat
           Inserted
 pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
           Internalin Domain With An Additional Leucine Rich Repeat
           Inserted
 pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
           Internalin Domain With An Additional Leucine Rich Repeat
           Inserted
          Length = 311

 Score = 28.9 bits (63), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSN 39
           + RL  L  L L DN +   +P  L  L+KL+NL+LS N
Sbjct: 172 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 208


>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
          Length = 599

 Score = 28.9 bits (63), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 7/156 (4%)

Query: 147 LSLHYNNLTGPIPSTLGHLNRIRILDLSENKLVGPIPSSVGH-LTQLNTLNMYSNQINGS 205
           + L +N L      +  + + ++ LDLS  + +  I     H L  L+ L +  N I   
Sbjct: 32  IDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQSF 90

Query: 206 IPLEIGNLKRVEAVKLYDNKLDGPIPPELMNCSKLMELELGNNLLRGS-IPSEIGKLQEL 264
            P     L  +E +   + KL       +     L +L + +N +    +P+    L  L
Sbjct: 91  SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 150

Query: 265 YYLDLSHNFINGKILSELGAI---PSID-TVDLSMN 296
            ++DLS+N+I    +++L  +   P ++ ++D+S+N
Sbjct: 151 VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 186


>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
          Length = 236

 Score = 28.9 bits (63), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSN 39
           + RL  L  L L DN +   +P  L  L+KL+NL+LS N
Sbjct: 170 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206


>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
           Complex With The Listeria Monocytogenes Invasion Protein
           Inlb: Crystal Form I
 pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
           Complex With The Listeria Monocytogenes Invasion Protein
           Inlb: Crystal Form I
 pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
           Complex With The Listeria Monocytogenes Invasion Protein
           Inlb: Low Resolution, Crystal Form Ii
 pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
           Complex With The Listeria Monocytogenes Invasion Protein
           Inlb: Low Resolution, Crystal Form Ii
 pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
           Triclinic Crystal Form
 pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
           Triclinic Crystal Form
 pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
           Triclinic Crystal Form
 pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
           Triclinic Crystal Form
 pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
           Triclinic Crystal Form
 pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
           Triclinic Crystal Form
 pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
           Rhombohedral Crystal Form
 pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
           Rhombohedral Crystal Form
          Length = 289

 Score = 28.9 bits (63), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSN 39
           + RL  L  L L DN +   +P  L  L+KL+NL+LS N
Sbjct: 150 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 186


>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
           Domains
          Length = 291

 Score = 28.9 bits (63), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSN 39
           + RL  L  L L DN +   +P  L  L+KL+NL+LS N
Sbjct: 152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188


>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
          Length = 236

 Score = 28.9 bits (63), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSN 39
           + RL  L  L L DN +   +P  L  L+KL+NL+LS N
Sbjct: 170 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206


>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
          Length = 236

 Score = 28.9 bits (63), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSN 39
           + RL  L  L L DN +   +P  L  L+KL+NL+LS N
Sbjct: 170 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206


>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
           Listeria Monocytogenes Inlb Internalin Domain
 pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
           Listeria Monocytogenes Inlb Internalin Domain
          Length = 286

 Score = 28.9 bits (63), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSN 39
           + RL  L  L L DN +   +P  L  L+KL+NL+LS N
Sbjct: 147 LSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKN 183


>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
           Includes A Cysteine Ladder
          Length = 457

 Score = 28.9 bits (63), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 101/269 (37%), Gaps = 63/269 (23%)

Query: 102 RLKSLDLSQNKLVGPIPSSLGHLTQLTTLNMRSNLINASLVNLTSLSLHYNNLTGPI--- 158
           +L  LD+SQN L+  +  +   LT++   ++  N        LT L  H N     +   
Sbjct: 117 KLTKLDVSQNPLLTYLNCARNTLTEI---DVSHN------TQLTELDCHLNKKITKLDVT 167

Query: 159 PSTL-----GHLNRIRILDLSENKLVGPIPSSVGHLT--------QLNTLNMYSNQ---- 201
           P T         N+I  LD+S+NKL+  +     ++T        QL  L+  SN+    
Sbjct: 168 PQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEI 227

Query: 202 --------------INGSIPLEIGNLKRVEAVKLYDNKL--------DGPIPPELMNCSK 239
                         +N    L++  L ++  +      L           I  +   C K
Sbjct: 228 DVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRK 287

Query: 240 LMELELGNNLLRGSIPSEIGKLQELYYLDLSHN------FINGKILSELGAIPSIDTVDL 293
           + EL++ +N     +  +   + E   LDLS N      ++N   L+EL    +     L
Sbjct: 288 IKELDVTHNTQLYLLDCQAAGITE---LDLSQNPKLVYLYLNNTELTELDVSHNTKLKSL 344

Query: 294 SMNNLSGSIPKSVRKVPHLDVLGNNLEGE 322
           S  N       SV K+P    L NN E E
Sbjct: 345 SCVNAHIQDFSSVGKIP---ALNNNFEAE 370


>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
          Length = 362

 Score = 28.5 bits (62), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 1   MGRLRNLVHLDLSDNYLWGYIPPTLGRLSKLENLHLSSNSL 41
           + RL  L  L L DN +   +P  L  L+KL+NL+LS N +
Sbjct: 152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190


>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
           From Bacteroides Eggerthii Dsm 20697 At 2.70 A
           Resolution
 pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
           From Bacteroides Eggerthii Dsm 20697 At 2.70 A
           Resolution
          Length = 636

 Score = 28.5 bits (62), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 93/211 (44%), Gaps = 32/211 (15%)

Query: 116 PIPSSLGHLTQLTTLNMRSNLINASL------VNLTSLSLHYNNLTGPIPSTL-GHLNRI 168
           P+ +SL    +L  L    N +   L      + L SL+L YN +T  IP+   G   ++
Sbjct: 321 PVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQV 379

Query: 169 RILDLSENKLVGPIPS--SVGHLTQLNTLNMYSNQINGSI------PLEIGNLK--RVEA 218
             L  + NKL   IP+      ++  + ++   N+I GS+      PL+    K   V +
Sbjct: 380 ENLSFAHNKL-KYIPNIFDAKSVSVXSAIDFSYNEI-GSVDGKNFDPLDPTPFKGINVSS 437

Query: 219 VKLYDNKLDGPIPPELMNC-SKLMELELGNNLL----RGSIPSEIGKLQELYYL---DLS 270
           + L +N++    P EL +  S L  + L  N L    + S+  E    +  Y L   DL 
Sbjct: 438 INLSNNQI-SKFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDENENFKNTYLLTSIDLR 496

Query: 271 HNFINGKILSELGA--IPSIDTVDLSMNNLS 299
            N +  K+  +  A  +P +  +DLS N+ S
Sbjct: 497 FNKLT-KLSDDFRATTLPYLVGIDLSYNSFS 526


>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From
           Cryptosporidium Parvum, Cgd7_40
          Length = 345

 Score = 28.5 bits (62), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 399 IIEATEDFHIKYCIGTGGYGSVYRA---RLPSGKVVALKKLHCXXXXXXXXXXXFRNKAR 455
           ++E  + +H+K  IG G YG V  A   +  + + + +   +             + + R
Sbjct: 21  LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVR 80

Query: 456 LLSQIRHRNIVKLY 469
           L+ ++ H NI +LY
Sbjct: 81  LMKKLHHPNIARLY 94


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.138    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,182,357
Number of Sequences: 62578
Number of extensions: 512116
Number of successful extensions: 2831
Number of sequences better than 100.0: 415
Number of HSP's better than 100.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 285
Number of HSP's that attempted gapping in prelim test: 1702
Number of HSP's gapped (non-prelim): 810
length of query: 482
length of database: 14,973,337
effective HSP length: 103
effective length of query: 379
effective length of database: 8,527,803
effective search space: 3232037337
effective search space used: 3232037337
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)