BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036035
(190 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SEU4|SR33_ARATH Serine/arginine-rich splicing factor 33 OS=Arabidopsis thaliana
GN=SR33 PE=1 SV=1
Length = 287
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 59/72 (81%)
Query: 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIV 60
+LR +FE++GPVKD+YLP++YYTG+PRGFGFV+F DAA+AK ++ L+ GRE+ +V
Sbjct: 51 DLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVV 110
Query: 61 FAEENRKTPQEM 72
FAEENRK P EM
Sbjct: 111 FAEENRKKPTEM 122
>sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12
PE=2 SV=1
Length = 261
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 52/77 (67%)
Query: 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIV 60
+LR F RYGP+ DVY+P ++YT PRGF +V+F DA +A LN + GR+I+I
Sbjct: 25 DLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEIQ 84
Query: 61 FAEENRKTPQEMRTSAR 77
FA+ +RKTP +M++ R
Sbjct: 85 FAQGDRKTPGQMKSKER 101
>sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10
PE=1 SV=2
Length = 262
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIV 60
+LR F RYGP+ DVY+P ++YT PRGF +V+F DA +A L+ I GR+I+I
Sbjct: 25 DLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQ 84
Query: 61 FAEENRKTPQEMRT 74
FA+ +RKTP +M+
Sbjct: 85 FAQGDRKTPNQMKA 98
>sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10
PE=1 SV=1
Length = 262
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIV 60
+LR F RYGP+ DVY+P ++YT PRGF +V+F DA +A L+ I GR+I+I
Sbjct: 25 DLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQ 84
Query: 61 FAEENRKTPQEMRT 74
FA+ +RKTP +M+
Sbjct: 85 FAQGDRKTPNQMKA 98
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVF 61
LR FE+YG V DVY+P++ YT E RGF FV+F DA +A ++ +++ GRE+++
Sbjct: 30 LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 89
Query: 62 A 62
A
Sbjct: 90 A 90
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes
GN=SRSF2 PE=2 SV=3
Length = 221
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVF 61
LR FE+YG V DVY+P++ YT E RGF FV+F DA +A ++ +++ GRE+++
Sbjct: 30 LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 89
Query: 62 A 62
A
Sbjct: 90 A 90
>sp|Q09511|RSP4_CAEEL Probable splicing factor, arginine/serine-rich 4
OS=Caenorhabditis elegans GN=rsp-4 PE=3 SV=1
Length = 196
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 44/66 (66%)
Query: 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIV 60
+LR FERYG + DV++P++ Y+ + +GFGFV+F DA A R + L+ GRE+++
Sbjct: 34 DLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVT 93
Query: 61 FAEENR 66
A+ +R
Sbjct: 94 LAKYDR 99
>sp|Q06A98|SRSF2_PIG Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2
PE=2 SV=1
Length = 221
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVF 61
LR FE+YG V DVY+P++ YT E RGF FV+F DA +A ++ +++ GRE+++
Sbjct: 30 LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 89
Query: 62 A 62
A
Sbjct: 90 A 90
>sp|Q6PDU1|SRSF2_RAT Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus
GN=Srsf2 PE=1 SV=3
Length = 221
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVF 61
LR FE+YG V DVY+P++ YT E RGF FV+F DA +A ++ +++ GRE+++
Sbjct: 30 LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 89
Query: 62 A 62
A
Sbjct: 90 A 90
>sp|Q62093|SRSF2_MOUSE Serine/arginine-rich splicing factor 2 OS=Mus musculus GN=Srsf2
PE=1 SV=4
Length = 221
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVF 61
LR FE+YG V DVY+P++ YT E RGF FV+F DA +A ++ +++ GRE+++
Sbjct: 30 LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 89
Query: 62 A 62
A
Sbjct: 90 A 90
>sp|Q01130|SRSF2_HUMAN Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2
PE=1 SV=4
Length = 221
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVF 61
LR FE+YG V DVY+P++ YT E RGF FV+F DA +A ++ +++ GRE+++
Sbjct: 30 LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 89
Query: 62 A 62
A
Sbjct: 90 A 90
>sp|Q3MHR5|SRSF2_BOVIN Serine/arginine-rich splicing factor 2 OS=Bos taurus GN=SRSF2
PE=2 SV=3
Length = 221
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVF 61
LR FE+YG V DVY+P++ YT E RGF FV+F DA +A ++ +++ GRE+++
Sbjct: 30 LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 89
Query: 62 A 62
A
Sbjct: 90 A 90
>sp|Q9BRL6|SRSF8_HUMAN Serine/arginine-rich splicing factor 8 OS=Homo sapiens GN=SRSF8
PE=1 SV=1
Length = 282
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVF 61
LR FE+YG V DVY+P+ +T PRGF FV+F DA +A+ ++ + + GRE+++
Sbjct: 30 LRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89
Query: 62 AEENRK 67
A R+
Sbjct: 90 ARYGRR 95
>sp|Q5R723|PPIE_PONAB Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE
PE=2 SV=1
Length = 301
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVF 61
L AF +G + D+ +P +Y T + RGF FV+F AEDAA A +N S + GR I++
Sbjct: 22 LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 81
Query: 62 AE 63
A+
Sbjct: 82 AK 83
>sp|Q9QZH3|PPIE_MOUSE Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie
PE=2 SV=2
Length = 301
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVF 61
L AF +G + D+ +P +Y T + RGF FV+F AEDAA A +N S + GR I++
Sbjct: 22 LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 81
Query: 62 AE 63
A+
Sbjct: 82 AK 83
>sp|A4FV72|PPIE_BOVIN Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2
SV=1
Length = 301
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVF 61
L AF +G + D+ +P +Y T + RGF FV+F AEDAA A +N S + GR I++
Sbjct: 22 LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 81
Query: 62 AE 63
A+
Sbjct: 82 AK 83
>sp|Q9UNP9|PPIE_HUMAN Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE
PE=1 SV=1
Length = 301
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVF 61
L AF +G + D+ +P +Y T + RGF FV+F AEDAA A +N S + GR I++
Sbjct: 22 LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 81
Query: 62 AE 63
A+
Sbjct: 82 AK 83
>sp|P62997|TRA2B_RAT Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b
PE=1 SV=1
Length = 288
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIV 60
+LR F +YGP+ DV + + + RGF FV F +DA EAK+R N + GR I++
Sbjct: 133 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
Query: 61 FAEENR 66
F+ R
Sbjct: 193 FSITKR 198
>sp|P62996|TRA2B_MOUSE Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1
SV=1
Length = 288
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIV 60
+LR F +YGP+ DV + + + RGF FV F +DA EAK+R N + GR I++
Sbjct: 133 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
Query: 61 FAEENR 66
F+ R
Sbjct: 193 FSITKR 198
>sp|P62995|TRA2B_HUMAN Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1
SV=1
Length = 288
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIV 60
+LR F +YGP+ DV + + + RGF FV F +DA EAK+R N + GR I++
Sbjct: 133 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
Query: 61 FAEENR 66
F+ R
Sbjct: 193 FSITKR 198
>sp|Q3ZBT6|TRA2B_BOVIN Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1
Length = 288
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIV 60
+LR F +YGP+ DV + + + RGF FV F +DA EAK+R N + GR I++
Sbjct: 133 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
Query: 61 FAEENR 66
F+ R
Sbjct: 193 FSITKR 198
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 53.5 bits (127), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIV 60
E R FE+YG V L ++ TG+ RGFGFV F EDA++A Q LN G+ + +
Sbjct: 257 EFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVG 316
Query: 61 FAEENRKTPQEMRTS 75
A++ + +E+R S
Sbjct: 317 RAQKKHEREEELRKS 331
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKI 59
L F +YG +++V + K+ T RGFGFV F EDA +A +N + GR+I++
Sbjct: 22 LETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRV 79
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIV 60
E + FE YG + +YL K++ G+ +GFGFV F E A +A LN I G++I +
Sbjct: 247 EFKKLFEAYGKITSIYLEKDH-EGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVG 305
Query: 61 FAEENRKTPQEMR 73
A++ R+ +E++
Sbjct: 306 RAQKKRERLEELK 318
Score = 36.6 bits (83), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 4 VAFERYGPVKDVY---LPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIV 60
+ FE + P+ V + ++ T + G+ +V F ED +A + LN+SLI GR +I+
Sbjct: 66 LLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIM 125
Query: 61 FAE 63
+++
Sbjct: 126 WSQ 128
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 23 TGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAE--ENRKTPQEMRTSAR 77
TG+ +GFGFV F E+A +A +N +I G+ + + A+ + R++ E + AR
Sbjct: 371 TGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVRRSQLEQQIQAR 427
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 46/97 (47%), Gaps = 17/97 (17%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVF 61
L F +YG V +V L K+ T + RGF FV F DA +A + LN + G+ IK+
Sbjct: 24 LEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARELNGKALDGKPIKVEQ 83
Query: 62 AEE-NRKTPQEMRTSARVSGRYGGSSRRTPPRSPRRR 97
A + + TP SRR PP SPR R
Sbjct: 84 ATKPSFSTP----------------SRRGPPTSPRSR 104
>sp|Q6PFR5|TRA2A_MOUSE Transformer-2 protein homolog alpha OS=Mus musculus GN=Tra2a PE=1
SV=1
Length = 281
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIV 60
+LR F RYGP+ V + + TG RGF FV F +D+ EA +R N + GR I++
Sbjct: 132 DLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 191
Query: 61 FAEENR 66
++ R
Sbjct: 192 YSITKR 197
>sp|Q13595|TRA2A_HUMAN Transformer-2 protein homolog alpha OS=Homo sapiens GN=TRA2A PE=1
SV=1
Length = 282
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIV 60
+LR F RYGP+ V + + TG RGF FV F +D+ EA +R N + GR I++
Sbjct: 134 DLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 193
Query: 61 FAEENR 66
++ R
Sbjct: 194 YSITKR 199
>sp|P19018|TRA2_DROME Transformer-2 sex-determining protein OS=Drosophila melanogaster
GN=tra2 PE=1 SV=1
Length = 264
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
Query: 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIV 60
++R F +YGP++ + + + T RGF F+ F DA AK + + GR I++
Sbjct: 112 KVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVD 171
Query: 61 FAEENR-KTPQEMRTSARVSGRY--GGSSRRTPPRSPRRRYHSYSRSPSPVRVSRDCRAR 117
F+ R TP T GR G + R PR RR YH RS SP RD R
Sbjct: 172 FSITQRAHTP----TPGVYLGRQPRGKAPRSFSPRRGRRVYH--DRSASPYDNYRD---R 222
Query: 118 DDNRSPRQSRSISRS 132
D R+ R R++ RS
Sbjct: 223 YDYRNDRYDRNLRRS 237
>sp|Q54Y98|TRA2_DICDI Transformer-2 protein homolog OS=Dictyostelium discoideum GN=tra2
PE=3 SV=1
Length = 326
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIV 60
+L+ F R+G + V L + TG + FGFV F EDA AK+ + G+ I+
Sbjct: 128 DLKDEFSRFGKIDHVDLIMDRKTGRSKCFGFVYFENKEDAVRAKEECQDLQLHGKSIRTD 187
Query: 61 FAEENRKTPQEMRTSARVSGRYGGS----SRRTPPR 92
F+ K P E G+Y G+ SRR+PPR
Sbjct: 188 FSAT--KKPHEP-----TPGKYFGNPRYDSRRSPPR 216
>sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea
GN=PSRP2 PE=1 SV=1
Length = 260
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIV 60
ELR E +G ++ + + Y+G R FGFV + EDA ++LN + IGGR+IK+
Sbjct: 99 ELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVN 158
Query: 61 FAE 63
E
Sbjct: 159 ITE 161
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 23 TGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKI 59
T + GFGFV F E+ A Q LN+S++ G++I++
Sbjct: 221 TSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRV 257
>sp|O35698|RBY1A_MOUSE RNA-binding motif protein, Y chromosome, family 1 member A1
OS=Mus musculus GN=Rbmy1a1 PE=1 SV=2
Length = 380
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKI 59
L+ F R+GPV V L ++ T + RGF F+ FR DA A + +N ++ G+ IK+
Sbjct: 24 LQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKV 81
>sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster
GN=cyp33 PE=1 SV=1
Length = 300
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVF 61
L AF +G + D+ +P +Y + RGF F+++ +EDAA A +N S + GR I++
Sbjct: 22 LNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNMNDSELCGRTIRVNL 81
Query: 62 AE 63
A+
Sbjct: 82 AK 83
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIV 60
+++ AF +G + D + K+ TG+ +G+GFV F DA A Q++ +GGR+I+
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 61 FA 62
+A
Sbjct: 181 WA 182
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIV 60
+++ AF +G + D + K+ TG+ +G+GFV F DA A Q++ +GGR+I+
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 61 FA 62
+A
Sbjct: 181 WA 182
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKI 59
L F +YG + +V + K+ T RGFGFV F +DA +A +N + GR+I++
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 79
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKI 59
L F +YG + +V + K+ T RGFGFV F +DA +A +N + GR+I++
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 79
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKI 59
L AF +YG + +V + K+ T RGFGFV F +DA +A +N + GR+I++
Sbjct: 21 LEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRV 78
>sp|Q60990|RBY1B_MOUSE RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus
musculus GN=Rbmy1b PE=2 SV=3
Length = 380
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKI 59
L+ F R+GPV V L ++ T + RGF F+ FR DA A + +N ++ G+ IK+
Sbjct: 24 LQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPADAKNAVKEMNGVILDGKRIKV 81
>sp|O74400|YOCE_SCHPO Uncharacterized RNA-binding protein C4F6.14
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC4F6.14 PE=1 SV=1
Length = 674
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 6 FERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFA 62
F GP+K + N TGE RG+GFV F EDA A + L + + GR +++ FA
Sbjct: 25 FSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFA 81
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDA 40
EL F ++GP+ L K+ T G GF+KFRY +D
Sbjct: 292 ELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDC 331
>sp|Q15415|RBY1F_HUMAN RNA-binding motif protein, Y chromosome, family 1 member F/J
OS=Homo sapiens GN=RBMY1F PE=2 SV=2
Length = 496
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVF 61
L+ F ++GP+ +V L K+ T + RGF F+ F DA A + +N + + G+ IK+
Sbjct: 24 LKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGTSLHGKAIKVEQ 82
Query: 62 AEE 64
A++
Sbjct: 83 AKK 85
>sp|Q8T6B9|PUF68_DROME Poly(U)-binding-splicing factor half pint OS=Drosophila
melanogaster GN=pUf68 PE=1 SV=2
Length = 637
Score = 47.4 bits (111), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 38/58 (65%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKI 59
+RVAF +GP+K + + + T + +GF FV++ E A A +++N +L+GGR IK+
Sbjct: 146 IRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKV 203
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKI 59
L F +YG + +V + K+ T RGFGFV F +DA +A +N + GR+I++
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 79
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKI 59
L F +YG + +V + K+ T RGFGFV F +DA +A +N + GR+I++
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 79
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKI 59
L F +YG + +V + K+ T RGFGFV F +DA +A +N + GR+I++
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 79
>sp|P0DJD4|RBY1C_HUMAN RNA-binding motif protein, Y chromosome, family 1 member C
OS=Homo sapiens GN=RBMY1C PE=1 SV=1
Length = 496
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVF 61
L+ F ++GP+ +V L K+ T + RGF F+ F DA A + +N + G+ IK+
Sbjct: 24 LKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82
Query: 62 AEE 64
A++
Sbjct: 83 AQK 85
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVF 61
LR AF +YG V D + + TG RGFGFV F +E A+ A Q L+ + GR +K+ +
Sbjct: 56 LREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNY 115
Query: 62 AEE 64
A +
Sbjct: 116 AND 118
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana
GN=RNU1 PE=1 SV=1
Length = 427
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVF 61
++ FE YGP+K V+L + T +P+G+ F+++ + D A ++ + I GR + +V
Sbjct: 154 IKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRV-LVD 212
Query: 62 AEENRKTP 69
E R P
Sbjct: 213 VERGRTVP 220
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKI 59
L F +YG + +V + K+ T RGFGFV F +DA +A +N + GR+I++
Sbjct: 21 LEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRV 78
>sp|P0C7P1|RBY1D_HUMAN RNA-binding motif protein, Y chromosome, family 1 member D
OS=Homo sapiens GN=RBMY1D PE=2 SV=1
Length = 496
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVF 61
L+ F ++GP+ +V L K+ T + RGF F+ F DA A + +N + G+ IK+
Sbjct: 24 LKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82
Query: 62 AEE 64
A++
Sbjct: 83 AKK 85
>sp|A6NEQ0|RBY1E_HUMAN RNA-binding motif protein, Y chromosome, family 1 member E
OS=Homo sapiens GN=RBMY1E PE=2 SV=1
Length = 496
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVF 61
L+ F ++GP+ +V L K+ T + RGF F+ F DA A + +N + G+ IK+
Sbjct: 24 LKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82
Query: 62 AEE 64
A++
Sbjct: 83 AKK 85
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,679,628
Number of Sequences: 539616
Number of extensions: 3131974
Number of successful extensions: 14784
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 541
Number of HSP's that attempted gapping in prelim test: 8552
Number of HSP's gapped (non-prelim): 3869
length of query: 190
length of database: 191,569,459
effective HSP length: 111
effective length of query: 79
effective length of database: 131,672,083
effective search space: 10402094557
effective search space used: 10402094557
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)