Query 036035
Match_columns 190
No_of_seqs 268 out of 2479
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 14:47:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 99.8 7.4E-19 2.5E-23 150.6 17.0 67 1-67 118-184 (437)
2 4fxv_A ELAV-like protein 1; RN 99.8 2.7E-18 9.2E-23 118.5 8.1 64 1-64 35-98 (99)
3 3s8s_A Histone-lysine N-methyl 99.7 1E-17 3.4E-22 117.8 8.3 65 1-65 22-86 (110)
4 2lxi_A RNA-binding protein 10; 99.7 5.2E-18 1.8E-22 115.2 4.4 70 1-70 17-88 (91)
5 3bs9_A Nucleolysin TIA-1 isofo 99.7 4.1E-17 1.4E-21 109.1 8.0 65 1-65 22-86 (87)
6 1whw_A Hypothetical protein ri 99.7 9E-17 3.1E-21 110.2 9.2 66 1-66 24-89 (99)
7 2dgo_A Cytotoxic granule-assoc 99.7 1.8E-16 6E-21 111.7 10.9 67 1-67 31-97 (115)
8 3md1_A Nuclear and cytoplasmic 99.7 8.3E-17 2.8E-21 106.7 8.6 65 1-65 17-81 (83)
9 2dnz_A Probable RNA-binding pr 99.7 9.2E-17 3.2E-21 109.2 8.6 66 1-66 21-86 (95)
10 2dnm_A SRP46 splicing factor; 99.7 4.9E-17 1.7E-21 112.3 7.2 66 1-66 29-94 (103)
11 3ns6_A Eukaryotic translation 99.7 2.5E-17 8.5E-22 113.6 5.7 64 1-64 28-92 (100)
12 2cq0_A Eukaryotic translation 99.7 6.3E-17 2.2E-21 111.8 7.6 66 1-66 31-96 (103)
13 2cqb_A Peptidyl-prolyl CIS-tra 99.7 5.8E-17 2E-21 111.7 7.2 66 1-66 28-93 (102)
14 1u6f_A Tcubp1, RNA-binding pro 99.7 8.9E-17 3.1E-21 116.9 8.4 66 1-66 58-123 (139)
15 3ex7_B RNA-binding protein 8A; 99.7 5.9E-17 2E-21 115.9 7.2 66 1-66 38-103 (126)
16 2x1f_A MRNA 3'-END-processing 99.7 1.3E-16 4.3E-21 109.0 8.5 66 1-66 18-83 (96)
17 2dgs_A DAZ-associated protein 99.7 1.4E-16 4.9E-21 109.2 8.7 65 1-66 26-90 (99)
18 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.2E-16 4.2E-21 118.5 8.8 66 1-66 55-120 (156)
19 2fy1_A RNA-binding motif prote 99.7 1.2E-16 4.3E-21 113.1 8.5 65 1-66 23-87 (116)
20 1x5u_A Splicing factor 3B subu 99.7 1.1E-16 3.7E-21 110.9 8.0 66 1-66 31-96 (105)
21 3p5t_L Cleavage and polyadenyl 99.7 1.4E-17 4.9E-22 112.6 3.4 66 1-66 17-84 (90)
22 2e5h_A Zinc finger CCHC-type a 99.7 1.1E-16 3.8E-21 108.6 7.8 63 1-63 32-94 (94)
23 2cqd_A RNA-binding region cont 99.7 2.9E-16 9.8E-21 110.8 10.2 65 1-66 33-97 (116)
24 3mdf_A Peptidyl-prolyl CIS-tra 99.7 8.1E-17 2.8E-21 107.2 6.9 63 1-63 23-85 (85)
25 1p27_B RNA-binding protein 8A; 99.7 9.1E-17 3.1E-21 111.5 7.4 66 1-66 39-104 (106)
26 1x5t_A Splicing factor 3B subu 99.7 9.8E-17 3.3E-21 109.3 7.3 66 1-66 21-87 (96)
27 2cpz_A CUG triplet repeat RNA- 99.7 9.1E-17 3.1E-21 113.2 7.2 66 1-66 41-106 (115)
28 2do4_A Squamous cell carcinoma 99.7 1.6E-16 5.6E-21 109.1 8.2 65 1-66 33-97 (100)
29 2cqc_A Arginine/serine-rich sp 99.7 1.3E-16 4.6E-21 108.3 7.6 64 1-64 31-94 (95)
30 1oo0_B CG8781-PA, drosophila Y 99.7 2E-16 6.7E-21 110.6 8.4 66 1-66 42-107 (110)
31 1x5s_A Cold-inducible RNA-bind 99.7 1.1E-16 3.7E-21 110.4 6.8 66 1-66 28-93 (102)
32 2cph_A RNA binding motif prote 99.7 2.9E-16 1E-20 109.0 8.5 66 1-66 31-98 (107)
33 1x4h_A RNA-binding protein 28; 99.7 3.1E-16 1.1E-20 109.5 8.6 66 1-66 31-102 (111)
34 2lkz_A RNA-binding protein 5; 99.7 6.6E-17 2.3E-21 110.7 5.0 64 1-64 25-94 (95)
35 2kxn_B Transformer-2 protein h 99.7 1.3E-16 4.6E-21 115.0 6.6 66 1-66 62-127 (129)
36 1wi8_A EIF-4B, eukaryotic tran 99.7 3.9E-16 1.3E-20 108.0 8.4 64 1-66 31-95 (104)
37 2cpf_A RNA binding motif prote 99.7 2.4E-16 8.1E-21 107.9 7.2 66 1-66 21-89 (98)
38 3ulh_A THO complex subunit 4; 99.6 3.5E-16 1.2E-20 108.7 8.0 62 1-63 45-106 (107)
39 3ucg_A Polyadenylate-binding p 99.6 4.4E-16 1.5E-20 104.5 8.2 64 1-65 22-85 (89)
40 2khc_A Testis-specific RNP-typ 99.6 2.3E-16 7.8E-21 111.6 6.9 63 1-63 56-118 (118)
41 2d9p_A Polyadenylate-binding p 99.6 3.6E-16 1.2E-20 108.0 7.6 64 1-66 31-94 (103)
42 2pe8_A Splicing factor 45; RRM 99.6 4.9E-16 1.7E-20 108.3 8.3 64 1-64 29-93 (105)
43 4a8x_A RNA-binding protein wit 99.6 2.5E-16 8.5E-21 105.4 6.6 65 1-65 20-85 (88)
44 2cq4_A RNA binding motif prote 99.6 2.7E-16 9.1E-21 110.6 7.0 64 1-65 41-104 (114)
45 2cpe_A RNA-binding protein EWS 99.6 3E-16 1E-20 110.1 7.2 66 1-66 31-104 (113)
46 2la6_A RNA-binding protein FUS 99.6 2.2E-16 7.4E-21 108.4 6.3 63 1-63 29-99 (99)
47 2dgp_A Bruno-like 4, RNA bindi 99.6 3.1E-16 1.1E-20 108.7 7.0 66 1-66 29-97 (106)
48 2dnh_A Bruno-like 5, RNA bindi 99.6 4.4E-16 1.5E-20 107.8 7.7 65 1-66 31-98 (105)
49 2dng_A Eukaryotic translation 99.6 6.4E-16 2.2E-20 106.8 8.5 64 1-66 31-94 (103)
50 1rk8_A CG8781-PA, CG8781-PA pr 99.6 4.4E-16 1.5E-20 116.7 8.1 66 1-66 88-153 (165)
51 2do0_A HnRNP M, heterogeneous 99.6 1.7E-15 5.9E-20 106.3 10.7 65 1-66 31-95 (114)
52 3n9u_C Cleavage and polyadenyl 99.6 4.1E-16 1.4E-20 116.1 7.7 65 1-65 71-137 (156)
53 2cq3_A RNA-binding protein 9; 99.6 1.4E-15 4.9E-20 104.9 9.7 65 1-67 31-95 (103)
54 4f25_A Polyadenylate-binding p 99.6 5E-16 1.7E-20 109.7 7.5 64 1-66 21-84 (115)
55 2ywk_A Putative RNA-binding pr 99.6 5.8E-16 2E-20 105.2 7.5 62 1-63 32-93 (95)
56 2div_A TRNA selenocysteine ass 99.6 2.9E-16 1E-20 107.6 5.8 65 1-65 25-94 (99)
57 2dhg_A TRNA selenocysteine ass 99.6 4.4E-16 1.5E-20 107.6 6.6 65 1-66 25-91 (104)
58 2jrs_A RNA-binding protein 39; 99.6 3.4E-16 1.2E-20 109.4 6.1 65 1-65 42-106 (108)
59 2dh8_A DAZ-associated protein 99.6 4.7E-16 1.6E-20 107.7 6.7 65 1-66 32-96 (105)
60 1x4c_A Splicing factor, argini 99.6 1.5E-15 5E-20 106.0 9.0 57 1-64 31-92 (108)
61 1p1t_A Cleavage stimulation fa 99.6 2.8E-16 9.7E-21 108.5 5.3 66 1-66 24-89 (104)
62 2jwn_A Embryonic polyadenylate 99.6 1.1E-15 3.8E-20 108.9 8.5 64 1-65 52-115 (124)
63 2wbr_A GW182, gawky, LD47780P; 99.6 5.7E-16 2E-20 103.9 6.5 57 1-63 23-79 (89)
64 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.6E-15 5.3E-20 104.7 8.9 64 1-66 31-94 (103)
65 2cpi_A CCR4-NOT transcription 99.6 7.4E-16 2.5E-20 108.1 7.3 66 1-66 31-102 (111)
66 2dgx_A KIAA0430 protein; RRM d 99.6 1.2E-15 4.2E-20 104.2 7.9 61 3-66 31-91 (96)
67 2kt5_A RNA and export factor-b 99.6 1.1E-15 3.6E-20 109.1 7.9 66 1-67 51-116 (124)
68 2cqp_A RNA-binding protein 12; 99.6 2.7E-16 9.2E-21 107.6 4.5 65 1-65 31-95 (98)
69 2kn4_A Immunoglobulin G-bindin 99.6 1.1E-15 3.6E-20 113.4 7.7 66 1-66 86-151 (158)
70 1jmt_A Splicing factor U2AF 35 99.6 1.3E-15 4.5E-20 105.9 7.6 61 1-62 42-103 (104)
71 2dis_A Unnamed protein product 99.6 1.9E-15 6.6E-20 105.2 8.3 67 1-67 24-94 (109)
72 2rs2_A Musashi-1, RNA-binding 99.6 2E-15 6.8E-20 105.6 8.3 65 1-66 41-105 (109)
73 1x4b_A Heterogeneous nuclear r 99.6 1.2E-15 4.3E-20 107.5 7.3 65 1-66 43-107 (116)
74 2mss_A Protein (musashi1); RNA 99.6 3.6E-16 1.2E-20 101.8 4.1 61 1-62 15-75 (75)
75 2ek1_A RNA-binding protein 12; 99.6 3.4E-16 1.2E-20 106.4 4.1 63 1-63 31-93 (95)
76 3s7r_A Heterogeneous nuclear r 99.6 1.9E-15 6.6E-20 101.0 7.7 61 1-62 27-87 (87)
77 2dgv_A HnRNP M, heterogeneous 99.6 1.2E-15 4E-20 103.1 6.6 64 1-66 24-87 (92)
78 3v4m_A Splicing factor U2AF 65 99.6 1.8E-15 6.3E-20 105.3 7.7 64 1-64 31-96 (105)
79 2j76_E EIF-4B, EIF4B, eukaryot 99.6 7.5E-16 2.6E-20 106.0 5.7 63 1-65 35-98 (100)
80 2ki2_A SS-DNA binding protein 99.6 2.8E-16 9.5E-21 105.9 3.1 65 1-66 17-81 (90)
81 1x4a_A Splicing factor, argini 99.6 3.3E-15 1.1E-19 104.2 8.7 63 1-66 38-100 (109)
82 2lea_A Serine/arginine-rich sp 99.6 6.1E-16 2.1E-20 112.4 5.0 66 1-66 63-128 (135)
83 3q2s_C Cleavage and polyadenyl 99.6 7.9E-16 2.7E-20 121.3 5.8 65 1-65 84-150 (229)
84 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.8E-15 6.3E-20 109.7 7.1 62 1-62 79-140 (140)
85 2cqg_A TDP-43, TAR DNA-binding 99.6 4.5E-15 1.5E-19 102.4 8.8 64 1-66 31-94 (103)
86 2nlw_A Eukaryotic translation 99.6 1.4E-15 4.7E-20 105.6 6.2 63 1-65 37-100 (105)
87 1s79_A Lupus LA protein; RRM, 99.6 1.2E-15 4.3E-20 105.8 5.7 62 1-64 27-88 (103)
88 3beg_B Splicing factor, argini 99.6 9.7E-16 3.3E-20 108.2 5.0 56 1-63 32-92 (115)
89 2dgu_A Heterogeneous nuclear r 99.6 8.3E-15 2.8E-19 101.2 9.5 60 1-68 27-86 (103)
90 1x5p_A Negative elongation fac 99.6 6.9E-15 2.4E-19 100.5 8.6 60 1-66 29-88 (97)
91 2m2b_A RNA-binding protein 10; 99.6 6.5E-16 2.2E-20 111.5 3.4 65 1-66 39-109 (131)
92 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.2E-15 4.1E-20 99.6 4.3 61 1-62 16-76 (77)
93 2dgw_A Probable RNA-binding pr 99.6 4.5E-15 1.5E-19 100.1 7.1 63 1-66 26-88 (91)
94 1sjq_A Polypyrimidine tract-bi 99.6 2.5E-15 8.4E-20 104.6 5.7 62 1-68 32-95 (105)
95 2a3j_A U1 small nuclear ribonu 99.6 3.9E-15 1.3E-19 107.1 7.0 61 2-65 50-110 (127)
96 2err_A Ataxin-2-binding protei 99.6 3.3E-15 1.1E-19 104.4 6.3 63 1-65 45-107 (109)
97 1x4d_A Matrin 3; structural ge 99.6 2.7E-15 9.3E-20 103.9 5.3 59 1-65 32-92 (102)
98 1x4e_A RNA binding motif, sing 99.6 4.7E-16 1.6E-20 103.6 1.3 62 1-62 21-82 (85)
99 2krb_A Eukaryotic translation 99.6 1.7E-15 5.8E-20 100.2 4.0 57 1-59 23-80 (81)
100 3ue2_A Poly(U)-binding-splicin 99.6 4.1E-15 1.4E-19 105.7 6.2 64 1-64 41-108 (118)
101 1x5o_A RNA binding motif, sing 99.6 5.6E-15 1.9E-19 103.7 6.6 63 1-64 41-111 (114)
102 1why_A Hypothetical protein ri 99.6 8.2E-15 2.8E-19 100.0 7.2 60 1-66 33-94 (97)
103 2f3j_A RNA and export factor b 99.6 4.1E-15 1.4E-19 112.8 6.1 65 1-66 104-168 (177)
104 1x4g_A Nucleolysin TIAR; struc 99.6 1.1E-14 3.8E-19 101.6 7.7 60 1-66 41-100 (109)
105 2cq1_A PTB-like protein L; RRM 99.5 1.6E-14 5.6E-19 99.8 8.4 61 1-67 31-93 (101)
106 2lcw_A RNA-binding protein FUS 99.3 3.8E-16 1.3E-20 110.3 0.0 66 1-66 23-96 (116)
107 2jvr_A Nucleolar protein 3; RN 99.5 5.8E-15 2E-19 103.8 6.0 61 1-65 44-105 (111)
108 3r27_A HnRNP L, heterogeneous 99.5 9.9E-15 3.4E-19 100.6 6.8 59 1-65 37-97 (100)
109 2fc9_A NCL protein; structure 99.5 1.3E-14 4.4E-19 99.7 7.4 62 1-66 31-92 (101)
110 1wez_A HnRNP H', FTP-3, hetero 99.5 4.9E-15 1.7E-19 102.5 5.2 62 1-65 31-92 (102)
111 2dnq_A RNA-binding protein 4B; 99.5 1.5E-14 5.3E-19 97.3 7.5 58 1-66 24-81 (90)
112 1wex_A Hypothetical protein (r 99.5 1.3E-14 4.5E-19 100.8 7.1 60 1-66 31-92 (104)
113 2cpy_A RNA-binding protein 12; 99.5 3.9E-15 1.3E-19 104.8 4.3 63 1-65 31-94 (114)
114 2hvz_A Splicing factor, argini 99.5 7.3E-15 2.5E-19 101.0 5.5 61 1-66 16-76 (101)
115 2ytc_A PRE-mRNA-splicing facto 99.5 1.5E-14 5E-19 96.2 6.7 57 1-63 28-85 (85)
116 2dgt_A RNA-binding protein 30; 99.5 3.1E-14 1.1E-18 96.2 8.4 58 1-66 26-83 (92)
117 2dit_A HIV TAT specific factor 99.5 1.6E-14 5.4E-19 101.4 7.1 61 1-65 42-102 (112)
118 2ad9_A Polypyrimidine tract-bi 99.5 9.3E-15 3.2E-19 103.9 5.9 62 1-68 47-110 (119)
119 3md3_A Nuclear and cytoplasmic 99.5 2.2E-14 7.4E-19 105.9 8.2 63 1-63 103-165 (166)
120 1wg5_A Heterogeneous nuclear r 99.5 1.5E-14 5E-19 100.2 6.7 63 1-65 31-94 (104)
121 1wel_A RNA-binding protein 12; 99.5 1.2E-15 4.1E-20 109.0 1.1 64 1-65 41-104 (124)
122 1iqt_A AUF1, heterogeneous nuc 99.5 2.9E-15 9.9E-20 97.4 2.8 61 1-62 15-75 (75)
123 2cpj_A Non-POU domain-containi 99.5 9.3E-15 3.2E-19 100.1 5.5 60 1-66 31-90 (99)
124 1whx_A Hypothetical protein ri 99.5 1.6E-14 5.5E-19 101.3 6.8 60 1-66 26-85 (111)
125 2fc8_A NCL protein; structure 99.5 2E-14 7E-19 98.8 7.2 63 1-66 31-93 (102)
126 2cpx_A Hypothetical protein FL 99.5 1.7E-15 5.9E-20 106.4 1.5 66 1-66 41-106 (115)
127 2j8a_A Histone-lysine N-methyl 99.5 1.3E-14 4.6E-19 103.7 5.8 65 1-65 22-96 (136)
128 2qfj_A FBP-interacting repress 99.5 2.4E-14 8.2E-19 110.3 7.8 66 1-66 141-206 (216)
129 2db1_A Heterogeneous nuclear r 99.5 7.7E-15 2.6E-19 104.1 4.6 63 1-65 33-98 (118)
130 2d9o_A DNAJ (HSP40) homolog, s 99.5 2.6E-14 8.8E-19 98.6 7.1 59 1-66 33-91 (100)
131 2dnn_A RNA-binding protein 12; 99.5 2.4E-14 8.2E-19 100.3 7.0 61 1-64 32-92 (109)
132 2xnq_A Nuclear polyadenylated 99.5 3.9E-14 1.3E-18 96.9 7.9 57 1-65 39-95 (97)
133 2cq2_A Hypothetical protein LO 99.5 1.8E-14 6.2E-19 101.6 6.1 59 1-65 43-106 (114)
134 2dnp_A RNA-binding protein 14; 99.5 4.4E-14 1.5E-18 95.1 7.7 58 1-66 25-82 (90)
135 2jvo_A Nucleolar protein 3; nu 99.5 2E-14 6.7E-19 100.4 6.1 58 1-66 47-104 (108)
136 1fj7_A Nucleolin RBD1, protein 99.5 1.3E-15 4.5E-20 104.7 -0.1 64 1-66 33-96 (101)
137 3s6e_A RNA-binding protein 39; 99.5 2.6E-14 8.7E-19 100.9 6.4 60 1-64 33-92 (114)
138 2kvi_A Nuclear polyadenylated 99.5 1.6E-14 5.5E-19 98.5 5.1 58 1-66 27-84 (96)
139 1wf1_A RNA-binding protein RAL 99.5 2.8E-14 9.5E-19 99.6 6.4 57 1-65 44-100 (110)
140 2hgn_A Heterogeneous nuclear r 99.5 4.3E-15 1.5E-19 108.5 2.3 63 1-66 62-124 (139)
141 2g4b_A Splicing factor U2AF 65 99.5 3.8E-14 1.3E-18 105.5 7.4 62 1-62 110-171 (172)
142 2e5j_A Methenyltetrahydrofolat 99.5 1.5E-14 5.2E-19 98.8 4.8 61 1-66 35-95 (97)
143 3zzy_A Polypyrimidine tract-bi 99.5 5.4E-14 1.8E-18 101.3 7.6 61 1-66 44-107 (130)
144 2cpd_A Apobec-1 stimulating pr 99.5 9.2E-14 3.1E-18 95.1 8.5 58 1-66 31-90 (99)
145 2bz2_A Negative elongation fac 99.5 2.2E-14 7.5E-19 102.3 5.5 60 1-66 53-112 (121)
146 2la4_A Nuclear and cytoplasmic 99.5 1.5E-14 5.3E-19 99.3 4.6 58 1-64 43-100 (101)
147 2yh0_A Splicing factor U2AF 65 99.5 5.3E-14 1.8E-18 107.0 7.9 66 1-66 130-195 (198)
148 1nu4_A U1A RNA binding domain; 99.5 1.7E-14 5.7E-19 98.3 4.5 62 2-66 29-90 (97)
149 3lqv_A PRE-mRNA branch site pr 99.5 3.8E-14 1.3E-18 99.6 6.5 62 1-65 24-85 (115)
150 2hgl_A HNRPF protein, heteroge 99.5 1.1E-14 3.7E-19 106.0 3.6 62 1-64 60-124 (136)
151 2cjk_A Nuclear polyadenylated 99.5 3.4E-14 1.2E-18 105.3 6.1 64 1-65 103-166 (167)
152 2e5i_A Heterogeneous nuclear r 99.5 6.4E-14 2.2E-18 100.3 7.0 60 1-66 41-103 (124)
153 1fxl_A Paraneoplastic encephal 99.5 1.1E-13 3.7E-18 102.2 8.5 65 1-65 18-82 (167)
154 2xs2_A Deleted in azoospermia- 99.5 3.8E-14 1.3E-18 97.5 5.5 63 1-66 25-87 (102)
155 1fjc_A Nucleolin RBD2, protein 99.5 2.2E-14 7.5E-19 97.6 4.2 61 1-66 32-92 (96)
156 1sjr_A Polypyrimidine tract-bi 99.5 5.6E-14 1.9E-18 105.0 6.7 62 1-66 62-125 (164)
157 1x4f_A Matrin 3; structural ge 99.5 1.7E-14 5.7E-19 101.5 3.4 60 1-66 42-103 (112)
158 2i2y_A Fusion protein consists 99.5 6.9E-14 2.3E-18 102.9 6.6 60 1-65 89-148 (150)
159 2lmi_A GRSF-1, G-rich sequence 99.5 1.1E-14 3.9E-19 101.3 2.2 63 1-65 27-92 (107)
160 1b7f_A Protein (SXL-lethal pro 99.5 9.1E-14 3.1E-18 102.9 7.2 66 1-66 19-84 (168)
161 3egn_A RNA-binding protein 40; 99.5 1.1E-14 3.9E-19 106.2 2.3 66 1-66 61-131 (143)
162 1l3k_A Heterogeneous nuclear r 99.5 1.1E-13 3.6E-18 105.1 7.7 65 1-66 120-184 (196)
163 2e5g_A U6 snRNA-specific termi 99.5 9.6E-14 3.3E-18 94.2 6.6 60 1-66 24-83 (94)
164 4f02_A Polyadenylate-binding p 99.5 8.5E-14 2.9E-18 108.0 7.1 63 1-65 119-181 (213)
165 4f02_A Polyadenylate-binding p 99.5 1.5E-13 5.1E-18 106.6 8.4 65 1-65 31-95 (213)
166 2e44_A Insulin-like growth fac 99.5 1E-13 3.5E-18 94.2 6.3 61 1-65 31-92 (96)
167 2cqh_A IGF-II mRNA-binding pro 99.5 5E-14 1.7E-18 95.3 4.5 59 1-66 24-84 (93)
168 1b7f_A Protein (SXL-lethal pro 99.4 1.5E-13 5E-18 101.8 7.0 62 1-62 105-168 (168)
169 2diu_A KIAA0430 protein; struc 99.4 1E-13 3.4E-18 93.9 4.9 55 2-66 30-85 (96)
170 1fxl_A Paraneoplastic encephal 99.4 1.9E-13 6.7E-18 100.8 7.0 62 1-62 104-167 (167)
171 3tyt_A Heterogeneous nuclear r 99.4 2.5E-13 8.6E-18 105.1 7.5 61 1-66 21-81 (205)
172 2qfj_A FBP-interacting repress 99.4 2.8E-13 9.7E-18 104.3 7.0 65 1-65 44-108 (216)
173 1wg1_A KIAA1579 protein, homol 99.4 2E-13 6.7E-18 91.6 4.9 58 1-65 21-78 (88)
174 3md3_A Nuclear and cytoplasmic 99.4 1E-12 3.5E-17 96.8 9.1 65 1-66 16-80 (166)
175 2dha_A FLJ20171 protein; RRM d 99.4 7E-14 2.4E-18 100.0 2.6 62 1-64 39-104 (123)
176 1l3k_A Heterogeneous nuclear r 99.4 6.2E-13 2.1E-17 100.9 7.9 64 1-65 29-92 (196)
177 3u1l_A PRE-mRNA-splicing facto 99.4 3.1E-13 1.1E-17 106.9 6.2 60 1-66 159-230 (240)
178 2ghp_A U4/U6 snRNA-associated 99.4 5.7E-13 2E-17 107.6 7.9 64 1-65 227-291 (292)
179 2hgm_A HNRPF protein, heteroge 99.4 2E-13 6.8E-18 98.0 4.3 61 1-64 58-120 (126)
180 3nmr_A Cugbp ELAV-like family 99.4 8.1E-13 2.8E-17 98.3 6.9 61 1-62 111-174 (175)
181 2dnl_A Cytoplasmic polyadenyla 99.4 4.4E-13 1.5E-17 94.2 4.9 60 1-63 24-86 (114)
182 1fje_B Nucleolin RBD12, protei 99.3 1.1E-12 3.9E-17 97.9 6.4 60 1-65 115-174 (175)
183 2hzc_A Splicing factor U2AF 65 99.3 1.5E-12 5.2E-17 86.6 6.2 54 1-61 22-86 (87)
184 2voo_A Lupus LA protein; RNA-b 99.3 2.1E-12 7.2E-17 99.1 7.6 62 1-64 125-186 (193)
185 3smz_A Protein raver-1, ribonu 99.3 1.5E-12 5.2E-17 104.7 6.9 66 1-67 201-266 (284)
186 2dnr_A Synaptojanin-1; RRM dom 99.3 2.5E-12 8.4E-17 86.3 6.5 56 1-65 31-86 (91)
187 3pgw_A U1-A; protein-RNA compl 99.3 4E-12 1.4E-16 102.1 8.6 62 2-66 30-91 (282)
188 3smz_A Protein raver-1, ribonu 99.3 4.4E-12 1.5E-16 101.9 8.4 66 1-66 111-176 (284)
189 3pgw_A U1-A; protein-RNA compl 99.3 3.4E-12 1.2E-16 102.5 7.7 58 1-63 223-281 (282)
190 3nmr_A Cugbp ELAV-like family 99.3 4.9E-12 1.7E-16 94.0 7.1 66 1-66 19-89 (175)
191 3d2w_A TAR DNA-binding protein 99.3 6.1E-12 2.1E-16 84.6 6.8 56 1-65 27-84 (89)
192 2cjk_A Nuclear polyadenylated 99.3 4.4E-12 1.5E-16 93.7 6.3 62 1-64 19-80 (167)
193 2adc_A Polypyrimidine tract-bi 99.3 3.8E-12 1.3E-16 99.6 5.7 60 1-65 51-110 (229)
194 1qm9_A Polypyrimidine tract-bi 99.2 4.3E-12 1.5E-16 96.7 4.4 60 1-65 20-79 (198)
195 1wf0_A TDP-43, TAR DNA-binding 99.2 4.9E-12 1.7E-16 84.6 3.5 59 1-66 21-79 (88)
196 3dxb_A Thioredoxin N-terminall 99.2 1.9E-11 6.5E-16 95.2 7.3 64 1-64 145-212 (222)
197 2adc_A Polypyrimidine tract-bi 99.2 1.6E-11 5.4E-16 96.1 6.7 60 1-65 167-228 (229)
198 1qm9_A Polypyrimidine tract-bi 99.2 8.5E-12 2.9E-16 95.0 4.8 60 1-65 136-197 (198)
199 2ghp_A U4/U6 snRNA-associated 99.2 1.8E-11 6.3E-16 98.7 6.3 65 1-66 133-198 (292)
200 3sde_A Paraspeckle component 1 99.2 3.2E-11 1.1E-15 96.2 6.6 64 1-65 112-179 (261)
201 3tyt_A Heterogeneous nuclear r 99.2 3E-11 1E-15 93.4 5.6 60 1-62 139-204 (205)
202 3sde_A Paraspeckle component 1 99.1 4.4E-11 1.5E-15 95.4 6.4 59 1-65 38-96 (261)
203 3tht_A Alkylated DNA repair pr 99.1 6E-11 2E-15 98.4 7.0 57 1-63 36-97 (345)
204 1fje_B Nucleolin RBD12, protei 99.1 7.3E-12 2.5E-16 93.4 0.6 63 1-65 29-91 (175)
205 1ufw_A Synaptojanin 2; RNP dom 99.1 7.2E-11 2.5E-15 79.6 5.1 54 1-63 40-93 (95)
206 2g4b_A Splicing factor U2AF 65 99.1 2.9E-10 9.9E-15 84.2 6.8 58 1-65 20-88 (172)
207 2yh0_A Splicing factor U2AF 65 99.0 3.2E-10 1.1E-14 85.8 6.4 58 1-65 20-88 (198)
208 1owx_A Lupus LA protein, SS-B, 98.9 2.7E-09 9.3E-14 75.6 6.1 58 1-64 35-95 (121)
209 2l9w_A U4/U6 snRNA-associated- 98.3 1.4E-06 4.6E-11 60.1 5.8 55 2-62 38-97 (117)
210 1wwh_A Nucleoporin 35, nucleop 97.9 4.5E-05 1.6E-09 53.4 7.8 55 2-63 40-95 (119)
211 1wey_A Calcipressin 1; structu 97.7 0.00023 7.7E-09 48.6 7.7 59 2-66 27-85 (104)
212 3p3d_A Nucleoporin 53; structu 97.3 0.00023 7.8E-09 50.6 4.2 61 2-63 23-97 (132)
213 2kn4_A Immunoglobulin G-bindin 97.1 0.00035 1.2E-08 50.7 3.5 35 14-50 2-36 (158)
214 2i2y_A Fusion protein consists 97.1 0.00022 7.7E-09 51.5 2.3 41 23-64 9-50 (150)
215 1whv_A Poly(A)-specific ribonu 96.3 0.0024 8.3E-08 42.9 3.0 39 1-47 31-69 (100)
216 3ctr_A Poly(A)-specific ribonu 96.3 0.0028 9.6E-08 42.7 3.3 40 1-48 21-60 (101)
217 2dhx_A Poly (ADP-ribose) polym 94.9 0.076 2.6E-06 35.9 6.1 53 2-63 25-82 (104)
218 3pq1_A Poly(A) RNA polymerase; 94.5 0.015 5.1E-07 49.8 2.2 40 1-45 68-107 (464)
219 2g0c_A ATP-dependent RNA helic 94.1 0.075 2.6E-06 33.6 4.5 44 11-63 32-75 (76)
220 1uw4_A UPF3X; nonsense mediate 91.2 1.5 5.2E-05 28.8 7.8 62 3-64 19-87 (91)
221 3pgw_S U1-70K; protein-RNA com 89.7 6.8 0.00023 32.9 12.6 22 34-57 148-169 (437)
222 3ts2_A Protein LIN-28 homolog 83.4 0.069 2.4E-06 38.6 -2.8 27 1-35 3-29 (148)
223 3lpe_A Putative transcription 83.0 3 0.0001 27.2 5.5 35 11-50 39-73 (92)
224 2l08_A Regulator of nonsense t 74.4 5.2 0.00018 26.5 4.5 60 4-63 25-94 (97)
225 3h7h_B Transcription elongatio 65.9 6.2 0.00021 26.5 3.5 35 11-50 40-74 (106)
226 1wvf_A 4-cresol dehydrogenase 57.3 12 0.0004 32.1 4.6 43 1-44 217-261 (520)
227 4bby_A Alkyldihydroxyacetoneph 56.6 15 0.0005 32.6 5.2 46 1-47 359-408 (658)
228 4eyt_A Telomerase associated p 54.8 41 0.0014 21.9 5.9 21 27-47 46-66 (129)
229 3p8b_B Transcription antitermi 52.4 16 0.00053 25.9 3.9 34 12-50 33-66 (152)
230 2exu_A Transcription initiatio 51.6 11 0.00037 28.4 3.0 25 26-50 148-172 (200)
231 2lea_A Serine/arginine-rich sp 48.3 3.8 0.00013 28.4 0.0 28 28-55 5-32 (135)
232 2e5p_A Protein PHF1, PHD finge 47.4 11 0.00036 23.1 1.9 10 27-36 37-46 (68)
233 2cu1_A Mitogen-activated prote 45.7 45 0.0015 22.1 4.9 47 8-63 40-86 (103)
234 2m0o_A PHD finger protein 1; t 42.8 13 0.00046 23.3 1.9 11 27-37 54-64 (79)
235 4e8u_A Putative uncharacterize 42.0 16 0.00056 26.7 2.6 41 2-45 38-81 (172)
236 2npt_B Mitogen-activated prote 41.6 21 0.0007 23.5 2.7 35 8-50 52-86 (100)
237 1xn9_A 30S ribosomal protein S 41.0 33 0.0011 22.7 3.8 28 11-39 48-76 (101)
238 2okq_A Hypothetical protein YB 40.5 77 0.0026 22.3 5.7 43 4-46 52-109 (141)
239 2v94_A RPS24, 30S ribosomal pr 39.7 44 0.0015 22.4 4.3 25 16-41 63-87 (107)
240 3fry_A Probable copper-exporti 39.0 57 0.002 19.0 4.9 38 2-46 23-60 (73)
241 1ywx_A 30S ribosomal protein S 38.1 42 0.0014 22.3 3.9 29 11-40 48-77 (102)
242 2jrh_A Mitogen-activated prote 37.5 24 0.00081 22.9 2.5 47 8-63 36-82 (94)
243 3pm9_A Putative oxidoreductase 36.5 46 0.0016 28.1 5.0 46 1-47 202-251 (476)
244 2cfx_A HTH-type transcriptiona 35.8 1E+02 0.0035 20.9 6.9 44 2-49 81-124 (144)
245 2e7g_A Putative ribosome-bindi 35.7 49 0.0017 22.7 4.2 36 9-48 43-79 (129)
246 2nn4_A Hypothetical protein YQ 35.2 7.3 0.00025 24.3 -0.2 15 1-15 7-21 (72)
247 2kcm_A Cold shock domain famil 34.6 8.9 0.0003 23.9 0.2 38 27-64 12-54 (74)
248 1e8g_A Vanillyl-alcohol oxidas 34.6 25 0.00086 30.4 3.1 37 8-45 258-294 (560)
249 2c60_A Human mitogen-activated 34.6 23 0.00079 23.6 2.2 35 8-50 63-97 (111)
250 2eqj_A Metal-response element- 34.5 20 0.00067 21.9 1.7 10 27-36 41-50 (66)
251 4ar0_A Type IV pilus biogenesi 34.0 19 0.00064 24.9 1.8 59 1-62 42-104 (128)
252 2e5q_A PHD finger protein 19; 33.3 9 0.00031 23.1 0.0 11 27-37 35-45 (63)
253 2i9x_A Putative septation prot 33.2 48 0.0016 21.3 3.5 26 11-36 5-30 (87)
254 3lo3_A Uncharacterized conserv 32.5 75 0.0026 20.3 4.5 20 26-45 52-71 (94)
255 2uuu_A Alkyldihydroxyacetoneph 32.0 63 0.0022 28.1 5.2 47 1-48 289-339 (584)
256 3ezj_A General secretion pathw 31.9 11 0.00039 28.7 0.4 60 1-63 17-85 (241)
257 1nz8_A Transcription antitermi 31.1 74 0.0025 21.2 4.5 25 26-50 61-90 (119)
258 3j21_T 50S ribosomal protein L 31.0 64 0.0022 20.6 3.8 13 30-42 66-78 (86)
259 3kiz_A Phosphoribosylformylgly 30.3 7.3 0.00025 32.5 -1.0 44 2-49 318-361 (394)
260 2id0_A Exoribonuclease 2; RNAs 30.0 21 0.00072 31.6 1.8 37 26-63 30-66 (644)
261 2k5n_A Putative cold-shock pro 29.6 26 0.00089 21.7 1.7 10 27-36 14-23 (74)
262 2xzm_P RPS24E; ribosome, trans 29.0 74 0.0025 22.6 4.2 24 17-41 58-81 (149)
263 1x8d_A Hypothetical protein YI 28.7 70 0.0024 21.1 3.9 33 1-36 28-60 (104)
264 1i1g_A Transcriptional regulat 28.3 1.1E+02 0.0038 20.4 5.1 43 2-48 80-123 (141)
265 3aqq_A Calcium-regulated heat 28.1 26 0.00089 24.9 1.7 10 27-36 74-83 (147)
266 3cam_A Cold-shock domain famil 28.0 24 0.00081 21.3 1.3 10 27-36 13-22 (67)
267 2g1d_A 30S ribosomal protein S 28.0 40 0.0014 22.2 2.5 10 23-32 62-71 (98)
268 3a0j_A Cold shock protein; OB- 27.8 24 0.00081 21.7 1.3 38 27-64 13-54 (73)
269 1c9o_A CSPB, cold-shock protei 27.6 24 0.00083 21.2 1.3 10 27-36 13-22 (66)
270 2ko1_A CTR148A, GTP pyrophosph 26.9 1.1E+02 0.0037 18.4 5.3 44 2-49 22-68 (88)
271 2ia9_A Putative septation prot 26.8 69 0.0024 21.1 3.5 26 11-36 5-30 (100)
272 2i9z_A Putative septation prot 26.5 72 0.0025 21.3 3.6 26 11-36 5-30 (105)
273 3mdo_A Putative phosphoribosyl 26.2 8.5 0.00029 32.0 -1.3 43 3-49 317-359 (389)
274 3u5c_Y RP50, 40S ribosomal pro 26.0 94 0.0032 21.7 4.2 24 17-41 60-83 (135)
275 1ytr_A Bacteriocin plantaricin 25.8 21 0.0007 17.0 0.5 9 2-10 17-25 (26)
276 1g6p_A Cold shock protein TMCS 25.3 28 0.00096 20.9 1.3 10 27-36 12-21 (66)
277 4hcz_A PHD finger protein 1; p 25.3 41 0.0014 19.9 1.9 11 27-37 31-41 (58)
278 2e1c_A Putative HTH-type trans 24.7 1.9E+02 0.0063 20.4 5.9 42 2-47 103-144 (171)
279 2cpq_A FragIle X mental retard 24.7 1.4E+02 0.0049 19.1 6.3 42 2-50 37-78 (91)
280 3ulj_A LIN28B, DNA-binding pro 24.5 45 0.0016 21.5 2.3 8 26-33 19-26 (90)
281 2f06_A Conserved hypothetical 24.4 1.7E+02 0.0057 19.7 6.6 25 27-52 111-135 (144)
282 2y3m_A Emhofq, protein transpo 24.4 77 0.0026 22.4 3.8 61 1-63 16-79 (175)
283 3n9y_A Cholesterol SIDE-chain 24.3 1E+02 0.0035 25.1 5.0 35 2-45 38-72 (487)
284 2l69_A Rossmann 2X3 fold prote 24.3 1.3E+02 0.0044 19.7 4.4 35 28-64 52-86 (134)
285 3fhk_A UPF0403 protein YPHP; d 23.9 29 0.00099 24.5 1.3 22 29-50 26-47 (147)
286 2kzf_A RBFA, ribosome-binding 23.4 1.4E+02 0.0046 19.6 4.6 37 9-49 35-72 (106)
287 3bam_A R. bamhi, protein (rest 23.1 85 0.0029 23.2 3.6 43 8-55 89-135 (213)
288 2lfv_A Protein DAMX; cell divi 28.7 18 0.0006 24.2 0.0 20 31-50 68-87 (106)
289 1o57_A PUR operon repressor; p 22.9 1.8E+02 0.0062 22.7 6.0 41 2-47 47-87 (291)
290 3ld6_A Lanosterol 14-alpha dem 22.5 1.2E+02 0.004 24.6 5.0 35 2-45 37-71 (461)
291 2cyy_A Putative HTH-type trans 22.4 1.9E+02 0.0064 19.6 5.9 43 2-48 83-125 (151)
292 2oug_A Transcriptional activat 21.9 86 0.0029 22.0 3.6 24 27-50 52-75 (162)
293 3e6i_A CYPIIE1, P450-J, cytoch 20.7 1.3E+02 0.0046 24.2 5.0 35 2-45 36-70 (476)
294 1jos_A RBFA, ribosome-binding 20.3 1.5E+02 0.0051 20.2 4.4 35 11-49 36-73 (128)
295 3ced_A Methionine import ATP-b 20.1 1E+02 0.0035 19.8 3.4 26 24-49 60-87 (98)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.81 E-value=7.4e-19 Score=150.64 Aligned_cols=67 Identities=27% Similarity=0.541 Sum_probs=63.7
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENRK 67 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~~ 67 (190)
+|+++|.+||.|+.|.|+.++.+++++|||||+|.+.++|++||..|||++|+|+.|.|+|+++...
T Consensus 118 ~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 118 KLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred HHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999987654
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.75 E-value=2.7e-18 Score=118.47 Aligned_cols=64 Identities=33% Similarity=0.525 Sum_probs=61.8
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEccc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEE 64 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~ 64 (190)
||+++|++||+|..|.|+.++.+|.++|||||+|.+.++|+.||..|||..|+|+.|.|++|++
T Consensus 35 ~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 35 ELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp HHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred HHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 5899999999999999999999999999999999999999999999999999999999999964
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=117.80 Aligned_cols=65 Identities=22% Similarity=0.240 Sum_probs=62.2
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|++||.|+.|.|+.++.|++++|||||+|.+.++|++||..|||..|+|+.|.|+++...
T Consensus 22 ~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 22 FLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp HHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred HHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999644
No 4
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.71 E-value=5.2e-18 Score=115.20 Aligned_cols=70 Identities=24% Similarity=0.440 Sum_probs=62.8
Q ss_pred CHHHHhhcCC-CeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhC-CCeeCCeEEEEEEcccCCCCcc
Q 036035 1 ELRVAFERYG-PVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLN-HSLIGGREIKIVFAEENRKTPQ 70 (190)
Q Consensus 1 DL~~~F~~~G-~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~-g~~l~g~~i~V~~a~~~~~~~~ 70 (190)
||+++|++|| +|..|.|+.++.|+.++|||||+|.+.++|+.||+.|+ +..|+|+.|.|++|.++.....
T Consensus 17 ~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~~~~ 88 (91)
T 2lxi_A 17 DIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKINE 88 (91)
T ss_dssp HHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCCCSC
T ss_pred HHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCCCCC
Confidence 6899999999 89999999999999999999999999999999999875 5679999999999987654433
No 5
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.70 E-value=4.1e-17 Score=109.13 Aligned_cols=65 Identities=32% Similarity=0.605 Sum_probs=61.0
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|++++++
T Consensus 22 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 22 AIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred HHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 58999999999999999999889999999999999999999999999999999999999999754
No 6
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=9e-17 Score=110.18 Aligned_cols=66 Identities=27% Similarity=0.603 Sum_probs=62.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|++++...
T Consensus 24 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 89 (99)
T 1whw_A 24 DLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKK 89 (99)
T ss_dssp HHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCS
T ss_pred HHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCc
Confidence 589999999999999999999899999999999999999999999999999999999999998754
No 7
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.69 E-value=1.8e-16 Score=111.67 Aligned_cols=67 Identities=31% Similarity=0.609 Sum_probs=63.5
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENRK 67 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~~ 67 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|++++....
T Consensus 31 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 97 (115)
T 2dgo_A 31 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 97 (115)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCC
T ss_pred HHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCC
Confidence 5899999999999999999988999999999999999999999999999999999999999987653
No 8
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.69 E-value=8.3e-17 Score=106.71 Aligned_cols=65 Identities=29% Similarity=0.475 Sum_probs=62.1
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|++++++
T Consensus 17 ~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 17 TLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp HHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred HHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999999999999999999999999999999764
No 9
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=9.2e-17 Score=109.22 Aligned_cols=66 Identities=32% Similarity=0.543 Sum_probs=62.7
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|++++...
T Consensus 21 ~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 86 (95)
T 2dnz_A 21 MLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERL 86 (95)
T ss_dssp HHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCC
T ss_pred HHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccccc
Confidence 589999999999999999999999999999999999999999999999999999999999997653
No 10
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=4.9e-17 Score=112.34 Aligned_cols=66 Identities=41% Similarity=0.761 Sum_probs=62.8
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|++++...
T Consensus 29 ~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dnm_A 29 SLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGR 94 (103)
T ss_dssp HHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCC
T ss_pred HHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCC
Confidence 589999999999999999999999999999999999999999999999999999999999997654
No 11
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.69 E-value=2.5e-17 Score=113.63 Aligned_cols=64 Identities=20% Similarity=0.319 Sum_probs=61.5
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCC-eEEEEEEccc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGG-REIKIVFAEE 64 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g-~~i~V~~a~~ 64 (190)
+|+++|++||.|..|.|+.++.|+.++|||||+|.+.++|+.||..|||..|+| +.|.|.++.+
T Consensus 28 ~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 28 ALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp HHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred HHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECch
Confidence 589999999999999999999999999999999999999999999999999999 9999999975
No 12
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.3e-17 Score=111.79 Aligned_cols=66 Identities=27% Similarity=0.499 Sum_probs=62.7
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|+++++..
T Consensus 31 ~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 96 (103)
T 2cq0_A 31 DLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPST 96 (103)
T ss_dssp HHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCC
T ss_pred HHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCC
Confidence 588999999999999999999999999999999999999999999999999999999999997654
No 13
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.8e-17 Score=111.71 Aligned_cols=66 Identities=41% Similarity=0.664 Sum_probs=62.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|+++++..
T Consensus 28 ~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 93 (102)
T 2cqb_A 28 VLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMR 93 (102)
T ss_dssp HHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred HHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCC
Confidence 589999999999999999999999999999999999999999999999999999999999997654
No 14
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.68 E-value=8.9e-17 Score=116.85 Aligned_cols=66 Identities=36% Similarity=0.589 Sum_probs=62.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|++||..|||..|+|+.|.|++++...
T Consensus 58 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 123 (139)
T 1u6f_A 58 QLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGH 123 (139)
T ss_dssp HHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCC
T ss_pred HHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 589999999999999999999999999999999999999999999999999999999999998654
No 15
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.68 E-value=5.9e-17 Score=115.91 Aligned_cols=66 Identities=23% Similarity=0.394 Sum_probs=62.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|+.||..|||.+|+|+.|.|++++...
T Consensus 38 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 103 (126)
T 3ex7_B 38 DIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRG 103 (126)
T ss_dssp HHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred HHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCC
Confidence 589999999999999999999999999999999999999999999999999999999999998654
No 16
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.68 E-value=1.3e-16 Score=108.96 Aligned_cols=66 Identities=26% Similarity=0.434 Sum_probs=63.0
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|+++++..
T Consensus 18 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 83 (96)
T 2x1f_A 18 QILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSD 83 (96)
T ss_dssp HHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSS
T ss_pred HHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCC
Confidence 589999999999999999999999999999999999999999999999999999999999998754
No 17
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=109.24 Aligned_cols=65 Identities=29% Similarity=0.531 Sum_probs=61.7
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||. ||+..|+|+.|.|+++++..
T Consensus 26 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~ 90 (99)
T 2dgs_A 26 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRD 90 (99)
T ss_dssp HHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCC
T ss_pred HHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCc
Confidence 589999999999999999999999999999999999999999999 99999999999999997654
No 18
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.68 E-value=1.2e-16 Score=118.46 Aligned_cols=66 Identities=20% Similarity=0.336 Sum_probs=63.0
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|++||..||+..|+|+.|.|+++++..
T Consensus 55 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 120 (156)
T 1h2v_Z 55 QIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK 120 (156)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCC
T ss_pred HHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 589999999999999999999999999999999999999999999999999999999999998654
No 19
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=113.06 Aligned_cols=65 Identities=32% Similarity=0.586 Sum_probs=61.4
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|++||.|+.|.|+.+. ++.++|||||+|.+.++|++||..|||..|+|+.|.|++++...
T Consensus 23 ~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 87 (116)
T 2fy1_A 23 MLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPS 87 (116)
T ss_dssp HHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSS
T ss_pred HHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 589999999999999999998 99999999999999999999999999999999999999997543
No 20
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=110.91 Aligned_cols=66 Identities=32% Similarity=0.484 Sum_probs=62.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|+.||..||+..|+|+.|.|++++...
T Consensus 31 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 96 (105)
T 1x5u_A 31 LLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHN 96 (105)
T ss_dssp HHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTS
T ss_pred HHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 589999999999999999999999999999999999999999999999999999999999997654
No 21
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.68 E-value=1.4e-17 Score=112.55 Aligned_cols=66 Identities=15% Similarity=0.253 Sum_probs=59.3
Q ss_pred CHHHHhhcCC--CeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYG--PVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G--~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+|| .|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|+|+.|.|.++.+..
T Consensus 17 ~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~ 84 (90)
T 3p5t_L 17 DLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLE 84 (90)
T ss_dssp HHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC----
T ss_pred HHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCc
Confidence 5899999999 99999999999999999999999999999999999999999999999999997654
No 22
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=108.63 Aligned_cols=63 Identities=29% Similarity=0.425 Sum_probs=60.6
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAE 63 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 63 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|++|+
T Consensus 32 ~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 32 DLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp HHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred HHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 589999999999999999999999999999999999999999999999999999999999984
No 23
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.9e-16 Score=110.80 Aligned_cols=65 Identities=29% Similarity=0.483 Sum_probs=61.5
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|++||..||+ +|+|+.|.|+++....
T Consensus 33 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~~ 97 (116)
T 2cqd_A 33 SLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLGA 97 (116)
T ss_dssp HHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTTC
T ss_pred HHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccCC
Confidence 5899999999999999999999999999999999999999999999998 8999999999997653
No 24
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.68 E-value=8.1e-17 Score=107.22 Aligned_cols=63 Identities=41% Similarity=0.685 Sum_probs=60.4
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAE 63 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 63 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|++++
T Consensus 23 ~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 23 VLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp HHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 589999999999999999998899999999999999999999999999999999999999984
No 25
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=9.1e-17 Score=111.48 Aligned_cols=66 Identities=23% Similarity=0.394 Sum_probs=62.8
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|+++.++.
T Consensus 39 ~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 39 DIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRG 104 (106)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred HHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCCC
Confidence 589999999999999999999999999999999999999999999999999999999999997653
No 26
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=9.8e-17 Score=109.30 Aligned_cols=66 Identities=20% Similarity=0.396 Sum_probs=62.5
Q ss_pred CHHHHhhcCCCeEEE-EEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDV-YLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v-~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..| .|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|+++.+..
T Consensus 21 ~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 21 LLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKD 87 (96)
T ss_dssp HHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCC
T ss_pred HHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccC
Confidence 589999999999999 999998899999999999999999999999999999999999999997654
No 27
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.67 E-value=9.1e-17 Score=113.23 Aligned_cols=66 Identities=24% Similarity=0.336 Sum_probs=62.8
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|+.||..||+..|+|+.|.|+++++..
T Consensus 41 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 106 (115)
T 2cpz_A 41 DLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKN 106 (115)
T ss_dssp HHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSC
T ss_pred HHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCC
Confidence 589999999999999999999999999999999999999999999999999999999999997654
No 28
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=109.12 Aligned_cols=65 Identities=26% Similarity=0.458 Sum_probs=61.4
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|+.||..|||..|+|+.|.|+++++..
T Consensus 33 ~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 97 (100)
T 2do4_A 33 ELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGP 97 (100)
T ss_dssp HHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCS
T ss_pred HHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 589999999999999999998 99999999999999999999999999999999999999997654
No 29
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=108.33 Aligned_cols=64 Identities=38% Similarity=0.644 Sum_probs=61.2
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEccc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEE 64 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~ 64 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|++++.
T Consensus 31 ~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 31 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp HHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred HHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 5899999999999999999999999999999999999999999999999999999999999863
No 30
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.67 E-value=2e-16 Score=110.56 Aligned_cols=66 Identities=27% Similarity=0.451 Sum_probs=62.8
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|+++.++.
T Consensus 42 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 107 (110)
T 1oo0_B 42 EIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 107 (110)
T ss_dssp HHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESS
T ss_pred HHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCC
Confidence 589999999999999999999999999999999999999999999999999999999999997654
No 31
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=110.37 Aligned_cols=66 Identities=33% Similarity=0.596 Sum_probs=62.7
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..||+..|+|+.|.|++++...
T Consensus 28 ~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 93 (102)
T 1x5s_A 28 SLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSS 93 (102)
T ss_dssp HHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCC
T ss_pred HHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 589999999999999999999999999999999999999999999999999999999999997654
No 32
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.9e-16 Score=108.99 Aligned_cols=66 Identities=38% Similarity=0.618 Sum_probs=62.4
Q ss_pred CHHHHhhcCCCeEEEEEccC-CCCCCcceEEEEEEcCHHHHHHHHHHh-CCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKN-YYTGEPRGFGFVKFRYAEDAAEAKQRL-NHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~-~~t~~~~G~afV~f~~~~~a~~Ai~~l-~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|+.|.|+.+ +.++.++|||||+|.+.++|+.||..| |+..|.|+.|.|++++...
T Consensus 31 ~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~ 98 (107)
T 2cph_A 31 EIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEV 98 (107)
T ss_dssp HHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCC
T ss_pred HHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCC
Confidence 58999999999999999999 789999999999999999999999999 9999999999999997654
No 33
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.1e-16 Score=109.54 Aligned_cols=66 Identities=21% Similarity=0.308 Sum_probs=62.7
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhC------CCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLN------HSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~------g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..|| +..|+|+.|.|.++.+..
T Consensus 31 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 31 ALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRD 102 (111)
T ss_dssp HHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCC
T ss_pred HHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCc
Confidence 589999999999999999999999999999999999999999999999 999999999999997654
No 34
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.66 E-value=6.6e-17 Score=110.73 Aligned_cols=64 Identities=33% Similarity=0.481 Sum_probs=59.3
Q ss_pred CHHHHhhcCCC--eEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCC----eeCCeEEEEEEccc
Q 036035 1 ELRVAFERYGP--VKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHS----LIGGREIKIVFAEE 64 (190)
Q Consensus 1 DL~~~F~~~G~--I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~----~l~g~~i~V~~a~~ 64 (190)
||+++|++||. |..|.|+.|+.|+.++|||||+|.+.++|+.||+.|||. .|+|+.|.|+||+.
T Consensus 25 ~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 25 SIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp HHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred HHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 58999999995 678999999999999999999999999999999999997 59999999999963
No 35
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.66 E-value=1.3e-16 Score=115.04 Aligned_cols=66 Identities=39% Similarity=0.692 Sum_probs=62.7
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||+|+.|.|+.++.++..+|||||+|.+.++|+.||..|||..|+|+.|.|++++++.
T Consensus 62 ~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 62 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 127 (129)
T ss_dssp HHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSSS
T ss_pred HHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 589999999999999999999999999999999999999999999999999999999999997653
No 36
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.9e-16 Score=108.04 Aligned_cols=64 Identities=22% Similarity=0.463 Sum_probs=60.3
Q ss_pred CHHHHhhcCCCeEEEEEccCCCC-CCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYT-GEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t-~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+|| |+.|.|+.++.+ +.++|||||+|.+.++|++|| .||+..|+|+.|.|+++++..
T Consensus 31 ~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 95 (104)
T 1wi8_A 31 SIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQ 95 (104)
T ss_dssp HHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCC
T ss_pred HHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCC
Confidence 5899999999 999999999987 999999999999999999999 899999999999999997654
No 37
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.4e-16 Score=107.86 Aligned_cols=66 Identities=24% Similarity=0.467 Sum_probs=61.3
Q ss_pred CHHHHhhcCCCeEEEEEccCCC---CCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYY---TGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~---t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.++. |+.++|||||+|.+.++|+.||..|||..|+|+.|.|++++...
T Consensus 21 ~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 89 (98)
T 2cpf_A 21 TLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERAT 89 (98)
T ss_dssp HHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSS
T ss_pred HHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCC
Confidence 5899999999999999998876 66889999999999999999999999999999999999997654
No 38
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.65 E-value=3.5e-16 Score=108.70 Aligned_cols=62 Identities=23% Similarity=0.396 Sum_probs=59.6
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAE 63 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 63 (190)
||+++|.+||.|+.|.|+.++ ++.++|||||+|.+.++|++||..|||..|+|+.|.|+++.
T Consensus 45 ~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 45 DIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 589999999999999999998 99999999999999999999999999999999999999985
No 39
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.65 E-value=4.4e-16 Score=104.52 Aligned_cols=64 Identities=31% Similarity=0.602 Sum_probs=60.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.|| .|||..|+|+.|.|+++++.
T Consensus 22 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 22 ELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp HHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred HHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 58999999999999999999999999999999999999999999 89999999999999999754
No 40
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.65 E-value=2.3e-16 Score=111.56 Aligned_cols=63 Identities=24% Similarity=0.384 Sum_probs=60.1
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAE 63 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 63 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|++++
T Consensus 56 ~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 56 DLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp HHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred HHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 589999999999999999999999999999999999999999999999999999999999974
No 41
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=3.6e-16 Score=107.97 Aligned_cols=64 Identities=27% Similarity=0.554 Sum_probs=60.4
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.+ ++.++|||||+|.+.++|+.||..|||..|+|+.|.|++++...
T Consensus 31 ~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2d9p_A 31 RLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 94 (103)
T ss_dssp HHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCC
T ss_pred HHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccc
Confidence 58999999999999999988 88999999999999999999999999999999999999997654
No 42
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.64 E-value=4.9e-16 Score=108.27 Aligned_cols=64 Identities=27% Similarity=0.308 Sum_probs=59.4
Q ss_pred CHHHHhhcCCCeEEEEEccCCCC-CCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEccc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYT-GEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEE 64 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t-~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~ 64 (190)
||+++|++||.|+.|.|+.++.+ +.++|||||+|.+.++|++||..|||..|+|+.|.|+++..
T Consensus 29 dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 29 ETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp HHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred HHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 58999999999999999988654 68899999999999999999999999999999999999864
No 43
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.64 E-value=2.5e-16 Score=105.43 Aligned_cols=65 Identities=22% Similarity=0.450 Sum_probs=60.6
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCC-cceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGE-PRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~-~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+||.|..|.|+.+..++. .+|||||+|.+.++|+.||..|||..|+|+.|.|+++.+.
T Consensus 20 ~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 20 HIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAP 85 (88)
T ss_dssp HHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCC
T ss_pred HHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCC
Confidence 5899999999999999999887766 8999999999999999999999999999999999999654
No 44
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.7e-16 Score=110.64 Aligned_cols=64 Identities=20% Similarity=0.292 Sum_probs=61.1
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|+.|| .|||..|+|+.|.|+++++.
T Consensus 41 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 41 DLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp HHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHHH
T ss_pred HHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCCC
Confidence 58999999999999999999999999999999999999999999 89999999999999999754
No 45
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3e-16 Score=110.12 Aligned_cols=66 Identities=23% Similarity=0.328 Sum_probs=62.3
Q ss_pred CHHHHhhcCCCeE--------EEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVK--------DVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~--------~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|. .|.|+.++.++.++|||||+|.+.++|+.||..|||..|.|+.|.|++++...
T Consensus 31 ~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 31 DLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKP 104 (113)
T ss_dssp HHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCC
T ss_pred HHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCC
Confidence 5899999999999 69999999999999999999999999999999999999999999999997654
No 46
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.64 E-value=2.2e-16 Score=108.40 Aligned_cols=63 Identities=25% Similarity=0.337 Sum_probs=60.4
Q ss_pred CHHHHhhcCCCeEE--------EEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Q 036035 1 ELRVAFERYGPVKD--------VYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAE 63 (190)
Q Consensus 1 DL~~~F~~~G~I~~--------v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 63 (190)
||+++|.+||.|.. |.|+.++.++.++|||||+|.+.++|+.||..|||..|.|+.|.|++|+
T Consensus 29 ~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 29 SVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp HHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 58999999999999 9999999999999999999999999999999999999999999999984
No 47
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.64 E-value=3.1e-16 Score=108.74 Aligned_cols=66 Identities=24% Similarity=0.441 Sum_probs=62.2
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCee---CCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLI---GGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l---~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..||+..| .|+.|.|.++....
T Consensus 29 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 29 DLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSES 97 (106)
T ss_dssp HHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCS
T ss_pred HHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCccc
Confidence 5899999999999999999999999999999999999999999999999988 89999999997653
No 48
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.64 E-value=4.4e-16 Score=107.80 Aligned_cols=65 Identities=22% Similarity=0.403 Sum_probs=61.1
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCC---eEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGG---REIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g---~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|+.||..|||..|.| +.|.|++++...
T Consensus 31 ~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 31 DVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDK 98 (105)
T ss_dssp HHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSC
T ss_pred HHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCc
Confidence 589999999999999999987 79999999999999999999999999999998 999999998654
No 49
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=6.4e-16 Score=106.77 Aligned_cols=64 Identities=23% Similarity=0.477 Sum_probs=60.3
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+|| |+.|.|+.++.++.++|||||+|.+.++|+.|| .||+..|.|+.|.|+++.+..
T Consensus 31 ~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dng_A 31 DIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRK 94 (103)
T ss_dssp HHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCC
T ss_pred HHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCC
Confidence 5899999997 999999999999999999999999999999999 899999999999999997654
No 50
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.64 E-value=4.4e-16 Score=116.65 Aligned_cols=66 Identities=27% Similarity=0.451 Sum_probs=62.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|.|+.|.|.|+....
T Consensus 88 ~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 153 (165)
T 1rk8_A 88 EIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 153 (165)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC
T ss_pred HHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 589999999999999999999999999999999999999999999999999999999999997654
No 51
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.7e-15 Score=106.28 Aligned_cols=65 Identities=25% Similarity=0.364 Sum_probs=60.7
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|+.|.|+.++ ++.++|||||+|.+.++|+.||..||+..|+|+.|.|++++...
T Consensus 31 ~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 95 (114)
T 2do0_A 31 KLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERAL 95 (114)
T ss_dssp HHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCCC
T ss_pred HHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccCC
Confidence 589999999999999999987 68999999999999999999999999999999999999997543
No 52
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.64 E-value=4.1e-16 Score=116.08 Aligned_cols=65 Identities=15% Similarity=0.271 Sum_probs=62.1
Q ss_pred CHHHHhhcCC--CeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYG--PVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G--~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+|| .|+.|.|+.++.+|.++|||||+|.+.++|+.||..|||..|+|+.|.|.++.+.
T Consensus 71 ~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 71 QLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp HHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred HHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 5899999999 9999999999999999999999999999999999999999999999999999653
No 53
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.4e-15 Score=104.93 Aligned_cols=65 Identities=32% Similarity=0.572 Sum_probs=59.5
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENRK 67 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~~ 67 (190)
||+++|.+||.|..|.|+.+.. .++|||||+|.+.++|+.||..||+..|+|+.|.|+++.+...
T Consensus 31 ~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cq3_A 31 DLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM 95 (103)
T ss_dssp HHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCC
T ss_pred HHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCC
Confidence 5899999999999999998854 3789999999999999999999999999999999999987653
No 54
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.63 E-value=5e-16 Score=109.70 Aligned_cols=64 Identities=22% Similarity=0.402 Sum_probs=58.7
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.+. +.++|||||+|.+.++|+.||..|||..|+|+.|.|+++....
T Consensus 21 ~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 21 ALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp HHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred HHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 589999999999999999885 4478999999999999999999999999999999999997654
No 55
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.63 E-value=5.8e-16 Score=105.24 Aligned_cols=62 Identities=32% Similarity=0.435 Sum_probs=59.0
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAE 63 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 63 (190)
||+++|.+||.|..|.|+.++. +.++|||||+|.+.++|+.||..|||..|+|+.|.|++++
T Consensus 32 ~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 32 ILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp HHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred HHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 5899999999999999999875 8899999999999999999999999999999999999985
No 56
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.9e-16 Score=107.57 Aligned_cols=65 Identities=26% Similarity=0.413 Sum_probs=61.8
Q ss_pred CHHHHhhcCCCeE-EEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeE----EEEEEcccC
Q 036035 1 ELRVAFERYGPVK-DVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGRE----IKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~-~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~----i~V~~a~~~ 65 (190)
||+++|.+||.|. .|.|+.++.++.++|||||+|.+.++|+.||..|||..|.|.. |.|+++++.
T Consensus 25 ~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 25 FISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp HHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCC
T ss_pred HHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCC
Confidence 5899999999999 9999999999999999999999999999999999999999999 999999754
No 57
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=4.4e-16 Score=107.62 Aligned_cols=65 Identities=22% Similarity=0.374 Sum_probs=61.3
Q ss_pred CHHHHhhc-CCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCe-eCCeEEEEEEcccCC
Q 036035 1 ELRVAFER-YGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSL-IGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~-~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~-l~g~~i~V~~a~~~~ 66 (190)
||+++|.+ ||.|..|.|+.++ ++.++|||||+|.+.++|+.||..||+.. |+|+.|.|+++....
T Consensus 25 ~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~ 91 (104)
T 2dhg_A 25 MLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKA 91 (104)
T ss_dssp HHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCC
T ss_pred HHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCC
Confidence 58999999 9999999999998 99999999999999999999999999999 999999999997654
No 58
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.63 E-value=3.4e-16 Score=109.41 Aligned_cols=65 Identities=32% Similarity=0.537 Sum_probs=61.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|++++++
T Consensus 42 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 42 MLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp HHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSS
T ss_pred HHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccC
Confidence 58999999999999999999999999999999999999999999999999999999999999754
No 59
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=4.7e-16 Score=107.73 Aligned_cols=65 Identities=31% Similarity=0.463 Sum_probs=61.5
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||.. |+..|+|+.|.|++++++.
T Consensus 32 ~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~ 96 (105)
T 2dh8_A 32 TLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRG 96 (105)
T ss_dssp HHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSS
T ss_pred HHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCCC
Confidence 5899999999999999999999999999999999999999999998 9999999999999997654
No 60
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=106.00 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=53.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCC-----eEEEEEEccc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGG-----REIKIVFAEE 64 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g-----~~i~V~~a~~ 64 (190)
||+++|.+||+|+.|.|+.+ |||||+|.+.++|++||+.|||.+|+| +.|.|+++++
T Consensus 31 ~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 31 DLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp HHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSC
T ss_pred HHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCC
Confidence 58999999999999999876 899999999999999999999999999 9999999975
No 61
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.8e-16 Score=108.53 Aligned_cols=66 Identities=30% Similarity=0.542 Sum_probs=62.7
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|+++....
T Consensus 24 ~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 89 (104)
T 1p1t_A 24 QLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEK 89 (104)
T ss_dssp HHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTT
T ss_pred HHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCcc
Confidence 589999999999999999999899999999999999999999999999999999999999997654
No 62
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.62 E-value=1.1e-15 Score=108.92 Aligned_cols=64 Identities=20% Similarity=0.544 Sum_probs=60.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.|| .|||..|+|+.|.|++++..
T Consensus 52 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 52 DLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp HHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCC
T ss_pred HHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCC
Confidence 58999999999999999999999999999999999999999999 79999999999999999754
No 63
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.62 E-value=5.7e-16 Score=103.90 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=53.7
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAE 63 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 63 (190)
+|.++|.+||+|+.|.|+. ++|||||+|.+.++|++||+.||+.+|+|+.|.|++|.
T Consensus 23 ~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 23 TLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp HHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred HHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 5899999999999999876 48999999999999999999999999999999999984
No 64
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=104.72 Aligned_cols=64 Identities=27% Similarity=0.354 Sum_probs=58.8
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.++.+ .+|||||+|.+.++|+.||..||+..|.|+.|.|++++...
T Consensus 31 ~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2cqi_A 31 LILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPS 94 (103)
T ss_dssp HHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTT
T ss_pred HHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCc
Confidence 58999999999999999998544 58999999999999999999999999999999999997654
No 65
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=7.4e-16 Score=108.07 Aligned_cols=66 Identities=23% Similarity=0.393 Sum_probs=59.3
Q ss_pred CHH---HHhhcCCCeEEEEEccCCCCC---CcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELR---VAFERYGPVKDVYLPKNYYTG---EPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~---~~F~~~G~I~~v~i~~~~~t~---~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+ ++|.+||.|..|.|+.+..++ .++|||||+|.+.++|+.||..|||.+|+|+.|.|++|+++.
T Consensus 31 ~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 31 EVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp HHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred HHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 466 999999999999999887654 456999999999999999999999999999999999997654
No 66
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=104.17 Aligned_cols=61 Identities=28% Similarity=0.299 Sum_probs=56.7
Q ss_pred HHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 3 RVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 3 ~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
.++|.+||.|..|.|+.++.+ +|||||+|.+.++|++||..|||..|+|+.|.|+++++..
T Consensus 31 ~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 31 QEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGAS 91 (96)
T ss_dssp HHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSS
T ss_pred HHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 399999999999999998766 8899999999999999999999999999999999997653
No 67
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.62 E-value=1.1e-15 Score=109.15 Aligned_cols=66 Identities=20% Similarity=0.352 Sum_probs=62.2
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENRK 67 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~~ 67 (190)
||+++|.+||.|+.|.|+.++ ++..+|||||+|.+.++|+.||..|||..|+|+.|.|++|.....
T Consensus 51 ~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 116 (124)
T 2kt5_A 51 DIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQID 116 (124)
T ss_dssp HHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTC
T ss_pred HHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 589999999999999999998 999999999999999999999999999999999999999987653
No 68
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.7e-16 Score=107.56 Aligned_cols=65 Identities=28% Similarity=0.358 Sum_probs=60.7
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|+++...
T Consensus 31 ~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 31 EILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp HHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCS
T ss_pred HHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Confidence 58999999999998888888889999999999999999999999999999999999999998643
No 69
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.61 E-value=1.1e-15 Score=113.36 Aligned_cols=66 Identities=42% Similarity=0.830 Sum_probs=62.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|.|+.|.|.++++..
T Consensus 86 ~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 86 TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp HHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred HHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 589999999999999999999999999999999999999999999999999999999999998654
No 70
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.61 E-value=1.3e-15 Score=105.90 Aligned_cols=61 Identities=31% Similarity=0.459 Sum_probs=56.4
Q ss_pred CHHHHh-hcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEc
Q 036035 1 ELRVAF-ERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFA 62 (190)
Q Consensus 1 DL~~~F-~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a 62 (190)
||+++| ++||.|+.|.|+.+. ++.++|||||+|.+.++|++||..|||..|+|+.|.|+++
T Consensus 42 dl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 42 EVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 467778 999999999999876 4788999999999999999999999999999999999987
No 71
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.9e-15 Score=105.21 Aligned_cols=67 Identities=25% Similarity=0.332 Sum_probs=61.6
Q ss_pred CHHHHhhcCCC-eEEEEEc-cCCCCCCcceEEEEEEcCHHHHHHHHHHhC--CCeeCCeEEEEEEcccCCC
Q 036035 1 ELRVAFERYGP-VKDVYLP-KNYYTGEPRGFGFVKFRYAEDAAEAKQRLN--HSLIGGREIKIVFAEENRK 67 (190)
Q Consensus 1 DL~~~F~~~G~-I~~v~i~-~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~--g~~l~g~~i~V~~a~~~~~ 67 (190)
||+++|.+||. |..|.|+ .+..++.++|||||+|.+.++|+.||..|| +..|+|+.|.|+++++...
T Consensus 24 ~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~ 94 (109)
T 2dis_A 24 EILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 94 (109)
T ss_dssp HHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCS
T ss_pred HHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCC
Confidence 58999999998 9999998 788889999999999999999999999996 5899999999999987654
No 72
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.61 E-value=2e-15 Score=105.62 Aligned_cols=65 Identities=26% Similarity=0.402 Sum_probs=60.5
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..| +..|+|+.|.|+++.+..
T Consensus 41 ~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~~~ 105 (109)
T 2rs2_A 41 GLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFPRR 105 (109)
T ss_dssp HHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCCCC
T ss_pred HHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccCCC
Confidence 58999999999999999999999999999999999999999999976 599999999999997654
No 73
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.2e-15 Score=107.49 Aligned_cols=65 Identities=26% Similarity=0.417 Sum_probs=61.3
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|+.||.. |+..|+|+.|.|+++++..
T Consensus 43 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~ 107 (116)
T 1x4b_A 43 SLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVARE 107 (116)
T ss_dssp HHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSCC
T ss_pred HHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCCc
Confidence 5899999999999999999999999999999999999999999997 9999999999999997654
No 74
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.61 E-value=3.6e-16 Score=101.77 Aligned_cols=61 Identities=26% Similarity=0.441 Sum_probs=58.1
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFA 62 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a 62 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||. ||+..|+|+.|.|++|
T Consensus 15 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 15 DVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp HHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred HHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999999999899999999999999999999998 9999999999999875
No 75
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.61 E-value=3.4e-16 Score=106.37 Aligned_cols=63 Identities=27% Similarity=0.316 Sum_probs=59.8
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAE 63 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 63 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||..||+..|+|+.|.|+++.
T Consensus 31 ~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 31 EILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp HHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred HHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 589999999999988888888899999999999999999999999999999999999999885
No 76
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.61 E-value=1.9e-15 Score=101.03 Aligned_cols=61 Identities=30% Similarity=0.491 Sum_probs=57.6
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFA 62 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a 62 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||. +++..|+|+.|.|++|
T Consensus 27 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 27 DLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp HHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred HHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999999999999999997 6888999999999876
No 77
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.60 E-value=1.2e-15 Score=103.11 Aligned_cols=64 Identities=28% Similarity=0.409 Sum_probs=59.6
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.+ ++.++|||||+|.+.++|+.||..|||..|+|+.|.|+++++..
T Consensus 24 ~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 24 MLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNAS 87 (92)
T ss_dssp HHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCS
T ss_pred HHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 58999999999999999874 88899999999999999999999999999999999999997654
No 78
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.60 E-value=1.8e-15 Score=105.33 Aligned_cols=64 Identities=23% Similarity=0.316 Sum_probs=58.7
Q ss_pred CHHHHhhcCCCeEEEEEccCCCC--CCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEccc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYT--GEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEE 64 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t--~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~ 64 (190)
||+++|++||.|+.|.|+.+..+ +..+|||||+|.+.++|++||..|||..|+|+.|.|+++..
T Consensus 31 dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 31 DVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 58999999999999999988765 36789999999999999999999999999999999999753
No 79
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.60 E-value=7.5e-16 Score=106.05 Aligned_cols=63 Identities=24% Similarity=0.474 Sum_probs=59.4
Q ss_pred CHHHHhhcCCCeEEEEEccCC-CCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNY-YTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~-~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+|| |..|.|+.++ .++.++|||||+|.+.++|+.|| .|||..|+|+.|.|+++++.
T Consensus 35 ~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 35 SIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp HHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCCS
T ss_pred HHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccCC
Confidence 5899999999 9999999998 69999999999999999999999 89999999999999999754
No 80
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.60 E-value=2.8e-16 Score=105.86 Aligned_cols=65 Identities=29% Similarity=0.525 Sum_probs=58.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.+ |+.||..|||..|+|+.|.|++|.+..
T Consensus 17 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~ 81 (90)
T 2ki2_A 17 QVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKK 81 (90)
T ss_dssp HHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC----
T ss_pred HHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 57889999999999999999999999999999999999 999999999999999999999997654
No 81
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.3e-15 Score=104.19 Aligned_cols=63 Identities=24% Similarity=0.442 Sum_probs=57.3
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|+.|.|+.+ +.++|||||+|.+.++|+.||..||+.+|+|+.|.|++++...
T Consensus 38 ~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 100 (109)
T 1x4a_A 38 DIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGR 100 (109)
T ss_dssp HHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred HHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCC
Confidence 58999999999999998654 4578999999999999999999999999999999999997654
No 82
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.60 E-value=6.1e-16 Score=112.38 Aligned_cols=66 Identities=42% Similarity=0.830 Sum_probs=62.8
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|+++++..
T Consensus 63 ~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 63 TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp HHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 589999999999999999999999999999999999999999999999999999999999998654
No 83
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.60 E-value=7.9e-16 Score=121.32 Aligned_cols=65 Identities=15% Similarity=0.269 Sum_probs=62.2
Q ss_pred CHHHHhhcCC--CeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYG--PVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G--~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+|| .|+.|.|+.++.+++++|||||+|.+.++|++||..||+++|+|+.|.|.+++..
T Consensus 84 ~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 84 DLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQ 150 (229)
T ss_dssp HHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHH
T ss_pred HHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCC
Confidence 5899999999 9999999999999999999999999999999999999999999999999998654
No 84
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.59 E-value=1.8e-15 Score=109.66 Aligned_cols=62 Identities=42% Similarity=0.690 Sum_probs=59.1
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFA 62 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a 62 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|++|
T Consensus 79 ~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 79 VLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp HHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred HHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999999999999999999999999999975
No 85
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.5e-15 Score=102.41 Aligned_cols=64 Identities=28% Similarity=0.504 Sum_probs=59.6
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|+.||. ++..|+|+.|.|+++..+.
T Consensus 31 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~~~ 94 (103)
T 2cqg_A 31 DLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPNSKQ 94 (103)
T ss_dssp HHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCCTTC
T ss_pred HHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecCCCC
Confidence 589999999999999999999999999999999999999999998 4679999999999997654
No 86
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.59 E-value=1.4e-15 Score=105.65 Aligned_cols=63 Identities=13% Similarity=0.378 Sum_probs=58.1
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCe-EEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGR-EIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~-~i~V~~a~~~ 65 (190)
+|+++|.+||.|..|.|+ ..+|.++|||||+|.+.++|+.||..|||..|+|+ .|.|+++...
T Consensus 37 ~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 37 VIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp HHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred HHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 489999999999999888 46889999999999999999999999999999998 9999998643
No 87
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.2e-15 Score=105.80 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=58.7
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEccc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEE 64 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~ 64 (190)
||+++|++||.|..|.|+.++. +.++|||||+|.+.++|+.||. ||+..|+|+.|.|.++..
T Consensus 27 ~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 27 DIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp HHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred HHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 5899999999999999999987 9999999999999999999999 999999999999999765
No 88
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.59 E-value=9.7e-16 Score=108.22 Aligned_cols=56 Identities=23% Similarity=0.346 Sum_probs=50.3
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeE-----EEEEEcc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGRE-----IKIVFAE 63 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~-----i~V~~a~ 63 (190)
||+++|.+||+|+.|.|+.+ |||||+|++.++|++||+.|||.+|+|+. |.|+.+.
T Consensus 32 ~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 32 DLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp HHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred HHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 68999999999999999865 89999999999999999999999999998 5555543
No 89
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.58 E-value=8.3e-15 Score=101.17 Aligned_cols=60 Identities=27% Similarity=0.491 Sum_probs=54.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCCCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENRKT 68 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~~~ 68 (190)
||+++|.+||.|+.|.|+ ++||||+|.+.++|++||..||+..|+|+.|.|+++++....
T Consensus 27 ~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 27 ILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp HHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred HHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 589999999999999987 459999999999999999999999999999999999876543
No 90
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.9e-15 Score=100.49 Aligned_cols=60 Identities=28% Similarity=0.468 Sum_probs=55.1
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|.. .+|||||+|.+.++|+.||..|||..|+|+.|.|++++...
T Consensus 29 ~l~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 29 LLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp HHHHHHTTTSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred HHHHHHhhCCCEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 5899999999999998853 47999999999999999999999999999999999997654
No 91
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.58 E-value=6.5e-16 Score=111.48 Aligned_cols=65 Identities=28% Similarity=0.406 Sum_probs=61.2
Q ss_pred CHHHHhhcCCCeEE--EEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCC----eeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKD--VYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHS----LIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~--v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~----~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|.. |.|+.++.++.++|||||+|.+. +|+.||..|||. .|+|+.|.|+++++..
T Consensus 39 ~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 39 SILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSK 109 (131)
T ss_dssp HHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSC
T ss_pred HHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCC
Confidence 58999999999976 99999999999999999999999 999999999999 9999999999997653
No 92
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.2e-15 Score=99.59 Aligned_cols=61 Identities=26% Similarity=0.423 Sum_probs=58.5
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFA 62 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a 62 (190)
||+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.||..|+ ..|+|+.|.|++|
T Consensus 16 ~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 16 GLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp HHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred HHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 589999999999999999999999999999999999999999999999 9999999999987
No 93
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=4.5e-15 Score=100.13 Aligned_cols=63 Identities=21% Similarity=0.353 Sum_probs=59.1
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+| .|..|.|+.+ .++.++|||||+|.+.++|+.||. |||..|+|+.|.|.+++..+
T Consensus 26 ~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 26 NVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSGP 88 (91)
T ss_dssp HHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSCC
T ss_pred HHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcCC
Confidence 589999999 9999999999 789999999999999999999999 99999999999999997653
No 94
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.5e-15 Score=104.56 Aligned_cols=62 Identities=18% Similarity=0.290 Sum_probs=55.8
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCC--CeeCCeEEEEEEcccCCCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNH--SLIGGREIKIVFAEENRKT 68 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g--~~l~g~~i~V~~a~~~~~~ 68 (190)
||+++|++||.|+.|.|+.+ +|||||+|++.++|+.||..|++ .+|.|+.|.|++++.+...
T Consensus 32 dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 32 EVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 95 (105)
T ss_dssp HHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCC
T ss_pred HHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCC
Confidence 68999999999999999976 79999999999999999998864 7899999999999876543
No 95
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=3.9e-15 Score=107.11 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=55.7
Q ss_pred HHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 2 L~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
|.++|++||.|+.|.|+. ++.++|||||+|.+.++|+.||..|||..|.|+.|.|+|++..
T Consensus 50 L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~ 110 (127)
T 2a3j_A 50 LYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETP 110 (127)
T ss_dssp HHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCC
T ss_pred HHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCc
Confidence 557999999999987753 6788999999999999999999999999999999999999764
No 96
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.3e-15 Score=104.44 Aligned_cols=63 Identities=33% Similarity=0.613 Sum_probs=58.2
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|++||.|..|.|+.++ +.++|||||+|.+.++|+.||..|||..|+|+.|.|++++++
T Consensus 45 ~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 45 DLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp HHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred HHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 589999999999999999885 348899999999999999999999999999999999999764
No 97
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=2.7e-15 Score=103.95 Aligned_cols=59 Identities=17% Similarity=0.334 Sum_probs=53.7
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCC--eeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHS--LIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~--~l~g~~i~V~~a~~~ 65 (190)
||+++|.+||.|+.|.|+.+ +|||||+|++.++|+.||..||+. .|.|+.|.|++|+..
T Consensus 32 dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 32 QLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp HHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred HHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 58999999999999999876 589999999999999999999864 599999999999754
No 98
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.7e-16 Score=103.64 Aligned_cols=62 Identities=23% Similarity=0.258 Sum_probs=58.2
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFA 62 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a 62 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|+|.++
T Consensus 21 ~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 21 DLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp HHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred HHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 58899999999999999999999999999999999999999999999999999999887654
No 99
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.56 E-value=1.7e-15 Score=100.17 Aligned_cols=57 Identities=14% Similarity=0.435 Sum_probs=52.8
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCe-EEEE
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGR-EIKI 59 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~-~i~V 59 (190)
||+++|++||.|..|.|+ +.+|.++|||||+|.+.++|+.||..|||..|+|+ .|.|
T Consensus 23 ~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 23 VIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 488999999999999887 45889999999999999999999999999999999 8876
No 100
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.56 E-value=4.1e-15 Score=105.66 Aligned_cols=64 Identities=23% Similarity=0.294 Sum_probs=58.3
Q ss_pred CHHHHhhcCCCeEEEEEccCCC----CCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEccc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYY----TGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEE 64 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~----t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~ 64 (190)
||+++|++||.|+.|.|+.+.. ++..+|||||+|.+.++|++||..|||..|+|+.|.|.++..
T Consensus 41 dl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 41 EVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp HHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 6889999999999999998864 456789999999999999999999999999999999999853
No 101
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.6e-15 Score=103.73 Aligned_cols=63 Identities=21% Similarity=0.392 Sum_probs=58.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCee--------CCeEEEEEEccc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLI--------GGREIKIVFAEE 64 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l--------~g~~i~V~~a~~ 64 (190)
||+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|+.||..|||..| .++.|.|.|+.+
T Consensus 41 ~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 41 ELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGP 111 (114)
T ss_dssp HHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCC
T ss_pred HHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCC
Confidence 589999999999999999998 999999999999999999999999999999 577899999974
No 102
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=8.2e-15 Score=100.04 Aligned_cols=60 Identities=20% Similarity=0.487 Sum_probs=55.6
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeC--CeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIG--GREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~--g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|+.|.|+.+ +|||||+|.+.++|+.||..||+..|. |+.|.|++++++.
T Consensus 33 ~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 33 ALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp HHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred HHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 58999999999999999865 789999999999999999999999999 9999999997653
No 103
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.55 E-value=4.1e-15 Score=112.83 Aligned_cols=65 Identities=20% Similarity=0.355 Sum_probs=61.4
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|+.|.|+.++ ++.++|||||+|.+.++|++||..|||..|+|+.|.|++|....
T Consensus 104 ~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 104 DIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 168 (177)
T ss_dssp HHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGG
T ss_pred HHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 589999999999999999998 99999999999999999999999999999999999999997643
No 104
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=101.55 Aligned_cols=60 Identities=27% Similarity=0.509 Sum_probs=56.2
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.+ +|||||+|.+.++|+.||..|||..|+|+.|.|.+++...
T Consensus 41 ~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 41 LMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp HHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred HHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 58999999999999999877 7999999999999999999999999999999999997654
No 105
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.6e-14 Score=99.80 Aligned_cols=61 Identities=15% Similarity=0.215 Sum_probs=54.7
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHh--CCCeeCCeEEEEEEcccCCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRL--NHSLIGGREIKIVFAEENRK 67 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l--~g~~l~g~~i~V~~a~~~~~ 67 (190)
||+++|.+||.|+.|.|+.+ +|||||+|++.++|+.||..| ++..|.|+.|.|++++....
T Consensus 31 ~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 93 (101)
T 2cq1_A 31 EVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKEL 93 (101)
T ss_dssp HHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSC
T ss_pred HHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccC
Confidence 58999999999999988876 799999999999999999977 56789999999999986543
No 106
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.32 E-value=3.8e-16 Score=110.26 Aligned_cols=66 Identities=24% Similarity=0.323 Sum_probs=62.1
Q ss_pred CHHHHhhcCCCeEE--------EEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKD--------VYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~--------v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|.. |.|+.++.++.++|||||+|.+.++|+.||..|||..|.|+.|.|++++...
T Consensus 23 ~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 23 SVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRA 96 (116)
Confidence 68999999999998 8899998899999999999999999999999999999999999999997653
No 107
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.55 E-value=5.8e-15 Score=103.82 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=54.9
Q ss_pred CHHHHhhcCC-CeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYG-PVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G-~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+|| +|..|.|+.. .++|||||+|.+.++|++||..|||.+|+|+.|.|+++...
T Consensus 44 dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 44 DLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp HHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred HHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 6899999999 9999988643 36899999999999999999999999999999999999643
No 108
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.54 E-value=9.9e-15 Score=100.59 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=53.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCe--eCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSL--IGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~--l~g~~i~V~~a~~~ 65 (190)
||.++|++||.|+.|.|+.. +|||||+|++.++|+.||..||+.. |.|+.|.|++++.+
T Consensus 37 ~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 37 DLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp HHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred HHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 58999999999999998864 7999999999999999999999875 78999999999764
No 109
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=99.70 Aligned_cols=62 Identities=31% Similarity=0.524 Sum_probs=55.7
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.| .|+.+ .++.++|||||+|.+.++|++||..||+..|+|+.|.|+++++..
T Consensus 31 ~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 31 TLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 92 (101)
T ss_dssp HHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCC
T ss_pred HHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCC
Confidence 589999999987 45665 688999999999999999999999999999999999999997653
No 110
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=4.9e-15 Score=102.54 Aligned_cols=62 Identities=19% Similarity=0.237 Sum_probs=56.7
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+||. +.|.|+.++ +++++|||||+|.+.++|++||. ||+..|+|+.|.|.++...
T Consensus 31 ~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~~ 92 (102)
T 1wez_A 31 DIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNSTA 92 (102)
T ss_dssp HHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECCC
T ss_pred HHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCCC
Confidence 68999999994 599999998 89999999999999999999995 8999999999999988644
No 111
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=97.34 Aligned_cols=58 Identities=28% Similarity=0.510 Sum_probs=54.1
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+ +|||||+|.+.++|+.||..||+..|+|+.|.|++++...
T Consensus 24 ~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 24 EIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp HHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred HHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 589999999999999987 5799999999999999999999999999999999997654
No 112
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.3e-14 Score=100.83 Aligned_cols=60 Identities=20% Similarity=0.319 Sum_probs=53.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCC--eeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHS--LIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~--~l~g~~i~V~~a~~~~ 66 (190)
||+++|++||.|+.|.|+.+ +|||||+|++.++|+.||..|++. .|+|+.|.|++++.+.
T Consensus 31 ~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 31 DLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp HHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred HHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcc
Confidence 58999999999999998865 799999999999999999988764 5999999999997654
No 113
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.9e-15 Score=104.85 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=59.0
Q ss_pred CHHHHhhcCCCe-EEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPV-KDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I-~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+||.| ..|.|+.++ ++.++|||||+|.+.++|++||.. |+..|+|+.|.|.++...
T Consensus 31 ~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 31 DVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLE 94 (114)
T ss_dssp HHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHH
T ss_pred HHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHH
Confidence 589999999999 889999998 999999999999999999999996 999999999999999754
No 114
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=7.3e-15 Score=100.97 Aligned_cols=61 Identities=34% Similarity=0.698 Sum_probs=56.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|++||.|..|.|+.+ ++|||||+|.+.++|+.||..|||..|+|+.|.|++++...
T Consensus 16 ~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 16 ELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp HHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred HHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 58999999999999999877 58999999999999999999999999999999999997654
No 115
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.5e-14 Score=96.19 Aligned_cols=57 Identities=19% Similarity=0.503 Sum_probs=53.5
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHh-CCCeeCCeEEEEEEcc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRL-NHSLIGGREIKIVFAE 63 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l-~g~~l~g~~i~V~~a~ 63 (190)
||+++|.+||.|..|.|+.+ +|||||+|.+.++|+.||..| |+..|+|+.|.|+|++
T Consensus 28 ~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 28 DLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp HHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred HHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 58999999999999999875 799999999999999999999 9999999999999984
No 116
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.1e-14 Score=96.19 Aligned_cols=58 Identities=34% Similarity=0.614 Sum_probs=53.8
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+. +||||+|.+.++|+.||..|||..|+|+.|.|+++++..
T Consensus 26 ~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 26 ELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp HHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred HHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 5899999999999999984 499999999999999999999999999999999997654
No 117
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.6e-14 Score=101.43 Aligned_cols=61 Identities=30% Similarity=0.502 Sum_probs=54.7
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+||.|..|.| .++ .++|||||+|.+.++|+.||..|||..|+|+.|.|+++.+.
T Consensus 42 ~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 42 DLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGT 102 (112)
T ss_dssp HHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSC
T ss_pred HHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 58899999999999966 443 37999999999999999999999999999999999999764
No 118
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=9.3e-15 Score=103.92 Aligned_cols=62 Identities=18% Similarity=0.290 Sum_probs=55.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCC--CeeCCeEEEEEEcccCCCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNH--SLIGGREIKIVFAEENRKT 68 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g--~~l~g~~i~V~~a~~~~~~ 68 (190)
||+++|++||.|+.|.|+.+ +|||||+|++.++|++||..|++ ..|.|+.|.|++++.+...
T Consensus 47 dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 47 EVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 110 (119)
T ss_dssp HHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCC
T ss_pred HHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCC
Confidence 58999999999999999876 79999999999999999998874 6899999999999876543
No 119
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.2e-14 Score=105.89 Aligned_cols=63 Identities=30% Similarity=0.500 Sum_probs=60.8
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAE 63 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 63 (190)
||+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|.||+
T Consensus 103 ~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 103 TLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred HHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 589999999999999999999999999999999999999999999999999999999999985
No 120
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.5e-14 Score=100.24 Aligned_cols=63 Identities=29% Similarity=0.415 Sum_probs=58.0
Q ss_pred CHHHHhhcCCCeEE-EEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKD-VYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~-v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+||.|.. |.|+.+ .+++++|||||+|.+.++|++||.. |+..|+|+.|.|.++...
T Consensus 31 ~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~ 94 (104)
T 1wg5_A 31 EIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRA 94 (104)
T ss_dssp HHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTT
T ss_pred HHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHH
Confidence 68999999999997 888888 7999999999999999999999996 999999999999998643
No 121
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.2e-15 Score=109.00 Aligned_cols=64 Identities=23% Similarity=0.276 Sum_probs=58.3
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+||.|..|.++.+..++.++|||||+|.+.++|++||. ||+..|+|+.|.|.++...
T Consensus 41 ~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~ 104 (124)
T 1wel_A 41 HVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITKK 104 (124)
T ss_dssp HHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHH
T ss_pred HHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCHH
Confidence 589999999999886666666799999999999999999999999 9999999999999998653
No 122
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.53 E-value=2.9e-15 Score=97.35 Aligned_cols=61 Identities=26% Similarity=0.438 Sum_probs=57.6
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFA 62 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a 62 (190)
||+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.||. +++..|+|+.|.|.+|
T Consensus 15 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 15 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp HHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred HHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999999999999999 5899999999999875
No 123
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=9.3e-15 Score=100.14 Aligned_cols=60 Identities=32% Similarity=0.659 Sum_probs=55.7
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.+ +|||||+|.+.++|+.||..|||..|.|+.|.|+++++..
T Consensus 31 ~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 31 EMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp HHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred HHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 58999999999999999865 7999999999999999999999999999999999997653
No 124
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.6e-14 Score=101.31 Aligned_cols=60 Identities=23% Similarity=0.294 Sum_probs=55.2
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.. +|||||+|.+.++|+.||..|||..|+|+.|.|+|+....
T Consensus 26 ~L~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 26 EIQETFSRFGSLGRVLLPEG------GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp HHHHHHHTTSCEEEEECCSS------SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred HHHHHHHhcCCEEEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 58999999999999988754 7899999999999999999999999999999999997643
No 125
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2e-14 Score=98.80 Aligned_cols=63 Identities=29% Similarity=0.506 Sum_probs=56.1
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+|+ .|.|+.++.++.++|||||+|.+.++|+.||..|||.+|+|+.|.|++++++.
T Consensus 31 ~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 93 (102)
T 2fc8_A 31 TLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 93 (102)
T ss_dssp HHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred HHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCC
Confidence 5788888774 56678888899999999999999999999999999999999999999997653
No 126
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.7e-15 Score=106.45 Aligned_cols=66 Identities=26% Similarity=0.335 Sum_probs=55.3
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|..+..++.++|||||+|.+.++|+.||..|||..|+|+.|.|++++...
T Consensus 41 ~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 106 (115)
T 2cpx_A 41 DLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKK 106 (115)
T ss_dssp HHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCS
T ss_pred HHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCC
Confidence 589999999999433222222278889999999999999999999999999999999999997654
No 127
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.3e-14 Score=103.70 Aligned_cols=65 Identities=15% Similarity=0.287 Sum_probs=57.5
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcC----HHH----HHHHHH--HhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRY----AED----AAEAKQ--RLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~----~~~----a~~Ai~--~l~g~~l~g~~i~V~~a~~~ 65 (190)
+|+++|.+||+|..|.++.|+.||.++|||||+|.+ +++ |..||. .|||..|+|..|.|++....
T Consensus 22 ~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 22 SIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKHS 96 (136)
T ss_dssp HHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCTT
T ss_pred HHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECccc
Confidence 489999999999999999999999999999999996 434 788988 89999999999999987543
No 128
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.52 E-value=2.4e-14 Score=110.35 Aligned_cols=66 Identities=24% Similarity=0.530 Sum_probs=62.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|.++....
T Consensus 141 ~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 141 DIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred HHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 589999999999999999999999999999999999999999999999999999999999998754
No 129
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.52 E-value=7.7e-15 Score=104.05 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=58.6
Q ss_pred CHHHHhhcCCC---eEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGP---VKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~---I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+||. |..|.|+.++. ++++|||||+|.+.++|++||. ||+.+|+|+.|.|.++...
T Consensus 33 ~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 33 DVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSHRT 98 (118)
T ss_dssp HHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEECHH
T ss_pred HHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCHH
Confidence 58999999999 89999999876 9999999999999999999999 9999999999999998643
No 130
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.6e-14 Score=98.64 Aligned_cols=59 Identities=24% Similarity=0.289 Sum_probs=52.2
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||+|+.|.|+. .++|||||+|++.++|+.||..+++ +.|+.|.|+|++...
T Consensus 33 ~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 33 VLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp HHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred HHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 5899999999999999883 5699999999999999999998655 689999999997654
No 131
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.4e-14 Score=100.33 Aligned_cols=61 Identities=33% Similarity=0.384 Sum_probs=56.5
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEccc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEE 64 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~ 64 (190)
||+++|.+| .|..|.|+.++. |.++|||||+|.+.++|++|| .||+..|+|+.|.|..+..
T Consensus 32 dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 32 DVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred HHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 689999999 899999999975 999999999999999999999 5999999999999988854
No 132
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.51 E-value=3.9e-14 Score=96.94 Aligned_cols=57 Identities=19% Similarity=0.447 Sum_probs=53.2
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+||.|..|.|. +|||||+|.+.++|+.||..|||..|+|+.|.|++++..
T Consensus 39 ~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 39 DLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp HHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred HHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 589999999999999884 689999999999999999999999999999999999754
No 133
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.8e-14 Score=101.56 Aligned_cols=59 Identities=24% Similarity=0.436 Sum_probs=53.3
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCee-----CCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLI-----GGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l-----~g~~i~V~~a~~~ 65 (190)
||+++|++||+|..|.|+.+ +|||||+|.+.++|++||..|||.+| .|..|.|.+++..
T Consensus 43 ~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 43 QLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKV 106 (114)
T ss_dssp HHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCC
T ss_pred HHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccC
Confidence 58999999999999988754 79999999999999999999999998 6889999998653
No 134
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.4e-14 Score=95.06 Aligned_cols=58 Identities=31% Similarity=0.496 Sum_probs=53.7
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+. +||||+|.+.++|+.||..|||..|+|+.|.|+++++..
T Consensus 25 ~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 25 ELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp HHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred HHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 5899999999999999984 499999999999999999999999999999999997653
No 135
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.51 E-value=2e-14 Score=100.43 Aligned_cols=58 Identities=31% Similarity=0.580 Sum_probs=54.3
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+ +|||||+|.+.++|+.||..|||..|+|+.|.|++++...
T Consensus 47 ~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 47 ELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp HHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred HHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 589999999999999887 6899999999999999999999999999999999997654
No 136
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.51 E-value=1.3e-15 Score=104.75 Aligned_cols=64 Identities=33% Similarity=0.400 Sum_probs=58.3
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|.. .++.+..++.++|||||+|.+.++|++||. |||..|.|+.|.|+++++..
T Consensus 33 ~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~ 96 (101)
T 1fj7_A 33 ELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRD 96 (101)
T ss_dssp HHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCCC
T ss_pred HHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCCC
Confidence 58999999999988 677777789999999999999999999999 99999999999999997654
No 137
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.50 E-value=2.6e-14 Score=100.95 Aligned_cols=60 Identities=22% Similarity=0.296 Sum_probs=55.1
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEccc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEE 64 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~ 64 (190)
||+++|++||.|+.|.|+.+. .+|||||+|.+.++|++||..|||..|+|+.|.|+++..
T Consensus 33 dl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 33 DVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPL 92 (114)
T ss_dssp HHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcH
Confidence 589999999999999987653 489999999999999999999999999999999999853
No 138
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.6e-14 Score=98.52 Aligned_cols=58 Identities=19% Similarity=0.425 Sum_probs=54.0
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|. +|||||+|.+.++|+.||..|||..|.|+.|.|++++...
T Consensus 27 ~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 27 DLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp HHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred HHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 589999999999999885 6899999999999999999999999999999999997654
No 139
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.50 E-value=2.8e-14 Score=99.64 Aligned_cols=57 Identities=25% Similarity=0.492 Sum_probs=53.1
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+||.|..|.| .+|||||+|.+.++|+.||..|||..|+|+.|.|++++..
T Consensus 44 ~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 44 DVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp HHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred HHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 58999999999999988 3789999999999999999999999999999999999754
No 140
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.50 E-value=4.3e-15 Score=108.48 Aligned_cols=63 Identities=17% Similarity=0.160 Sum_probs=57.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+|| |+.|.|+.++. ++++|||||+|++.++|++|| .||+.+|+|+.|.|.++....
T Consensus 62 dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 62 DIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp HHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred HHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 6899999999 77999999975 999999999999999999999 699999999999999987654
No 141
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.50 E-value=3.8e-14 Score=105.52 Aligned_cols=62 Identities=23% Similarity=0.419 Sum_probs=60.0
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFA 62 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a 62 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|++|
T Consensus 110 ~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 110 QVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 58999999999999999999889999999999999999999999999999999999999997
No 142
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.5e-14 Score=98.77 Aligned_cols=61 Identities=23% Similarity=0.401 Sum_probs=54.2
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|. +.|+.+ .++|||||+|.+.++|+.||..|||..|+|+.|.|++++++.
T Consensus 35 ~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 35 DLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp HHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 5899999999997 666643 578999999999999999999999999999999999997653
No 143
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.49 E-value=5.4e-14 Score=101.32 Aligned_cols=61 Identities=20% Similarity=0.295 Sum_probs=55.1
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceE-EEEEEcCHHHHHHHHHHhCCCeeCC--eEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGF-GFVKFRYAEDAAEAKQRLNHSLIGG--REIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~-afV~f~~~~~a~~Ai~~l~g~~l~g--~~i~V~~a~~~~ 66 (190)
+|+++|++||.|..|.|+.. .+|| |||+|.+.++|+.||..|||..|.| ..|.|+|++...
T Consensus 44 ~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 44 VLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp HHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred HHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 58999999999999988764 2688 9999999999999999999999998 899999998654
No 144
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=9.2e-14 Score=95.12 Aligned_cols=58 Identities=31% Similarity=0.491 Sum_probs=53.3
Q ss_pred CHHHHhhcC--CCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERY--GPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~--G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+| |.|..|.++ +|||||+|.+.++|+.||..|||..|+|+.|.|+++++..
T Consensus 31 ~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 31 MIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp HHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred HHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 589999999 999999876 5799999999999999999999999999999999997654
No 145
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.49 E-value=2.2e-14 Score=102.28 Aligned_cols=60 Identities=28% Similarity=0.468 Sum_probs=55.2
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+. .+|||||+|.+.++|+.||..|||..|+|+.|.|++++...
T Consensus 53 ~L~~~F~~~G~I~~v~i~~------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 53 LLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp HHHHHHSTTCCCSCEEEET------TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred HHHHHHHccCCEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 5899999999999998863 48999999999999999999999999999999999997654
No 146
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.5e-14 Score=99.31 Aligned_cols=58 Identities=24% Similarity=0.369 Sum_probs=53.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEccc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEE 64 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~ 64 (190)
||+++|.+||.|..|.|+. .+|||||+|.+.++|+.||..|||..|+|+.|.|.++++
T Consensus 43 ~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 43 DLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp HHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred HHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 5899999999999999884 379999999999999999999999999999999999864
No 147
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.49 E-value=5.3e-14 Score=107.01 Aligned_cols=66 Identities=21% Similarity=0.384 Sum_probs=62.6
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|.++.+..
T Consensus 130 ~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 130 QVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp HHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred HHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 589999999999999999998899999999999999999999999999999999999999997653
No 148
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.49 E-value=1.7e-14 Score=98.27 Aligned_cols=62 Identities=23% Similarity=0.443 Sum_probs=55.8
Q ss_pred HHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 2 L~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
|.++|.+||.|..|.|+. ++.++|||||+|.+.++|+.||..|||..|+|+.|.|+++++..
T Consensus 29 l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 29 LHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS 90 (97)
T ss_dssp HHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCC
T ss_pred HHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCC
Confidence 339999999999998873 56678999999999999999999999999999999999997654
No 149
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.49 E-value=3.8e-14 Score=99.57 Aligned_cols=62 Identities=24% Similarity=0.457 Sum_probs=56.7
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||.++|.+||.|..|.|+.+ +.++|||||+|.+.++|+.||..|||..|+|+.|.|+++.+.
T Consensus 24 ~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 24 EMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp HHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred HHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 58999999999999999865 445899999999999999999999999999999999999753
No 150
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.49 E-value=1.1e-14 Score=105.99 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=58.3
Q ss_pred CHHHHhhcCCC---eEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEccc
Q 036035 1 ELRVAFERYGP---VKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEE 64 (190)
Q Consensus 1 DL~~~F~~~G~---I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~ 64 (190)
||+++|.+||. |..|.|+.++. |+++|||||+|.+.++|++||. ||+.+|+|+.|.|.++..
T Consensus 60 dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 60 DVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHR 124 (136)
T ss_dssp HHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCH
T ss_pred HHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECCh
Confidence 68999999999 88999999986 9999999999999999999999 999999999999999854
No 151
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.48 E-value=3.4e-14 Score=105.27 Aligned_cols=64 Identities=31% Similarity=0.442 Sum_probs=60.6
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.||. |+|..|+|+.|.|.+|.++
T Consensus 103 ~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 103 EFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 589999999999999999998899999999999999999999998 9999999999999999754
No 152
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=6.4e-14 Score=100.28 Aligned_cols=60 Identities=28% Similarity=0.326 Sum_probs=53.3
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceE-EEEEEcCHHHHHHHHHHhCCCeeCC--eEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGF-GFVKFRYAEDAAEAKQRLNHSLIGG--REIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~-afV~f~~~~~a~~Ai~~l~g~~l~g--~~i~V~~a~~~~ 66 (190)
+|+++|++||.|..|.|+.. .|| |||+|.+.++|+.||..|||..|.| ..|.|++|++..
T Consensus 41 ~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 41 VLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp HHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred HHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 58999999999999988642 386 9999999999999999999999988 589999998654
No 153
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.48 E-value=1.1e-13 Score=102.20 Aligned_cols=65 Identities=29% Similarity=0.506 Sum_probs=61.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|.|..|.|.++.+.
T Consensus 18 ~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 82 (167)
T 1fxl_A 18 EFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 82 (167)
T ss_dssp HHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred HHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCC
Confidence 58999999999999999999989999999999999999999999999999999999999998754
No 154
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.48 E-value=3.8e-14 Score=97.53 Aligned_cols=63 Identities=32% Similarity=0.545 Sum_probs=58.8
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|+.||. ++..|+|+.|.|.++....
T Consensus 25 ~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~~ 87 (102)
T 2xs2_A 25 EIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIRKQ 87 (102)
T ss_dssp HHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEECC
T ss_pred HHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCcCc
Confidence 589999999999999999998 99999999999999999999998 9999999999999987543
No 155
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=2.2e-14 Score=97.56 Aligned_cols=61 Identities=23% Similarity=0.448 Sum_probs=54.6
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..| ..++.++|||||+|.+.++|+.||..|||..|+|+.|.|+++.+..
T Consensus 32 ~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 32 ELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp HHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred HHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 589999999988765 3477889999999999999999999999999999999999997643
No 156
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.47 E-value=5.6e-14 Score=104.95 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=55.2
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCC--eEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGG--REIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g--~~i~V~~a~~~~ 66 (190)
||+++|++||+|+.|.|+... .+|||||+|.+.++|+.||..|||..|.| ..|.|+|++...
T Consensus 62 ~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 62 VLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp HHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred HHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 589999999999999886432 47899999999999999999999999976 999999998653
No 157
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.7e-14 Score=101.54 Aligned_cols=60 Identities=22% Similarity=0.323 Sum_probs=53.3
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCC--CeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNH--SLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g--~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|+.|.|+.. +|||||+|++.++|+.||..||+ ..|.|+.|.|++++...
T Consensus 42 ~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~ 103 (112)
T 1x4f_A 42 AVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYK 103 (112)
T ss_dssp HHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCS
T ss_pred HHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcccc
Confidence 58999999999999999754 79999999999999999998864 56999999999997543
No 158
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.47 E-value=6.9e-14 Score=102.86 Aligned_cols=60 Identities=35% Similarity=0.713 Sum_probs=56.3
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+||.|..|.|+.+ ++|||||+|.+.++|+.||..|||..|+|+.|.|+++++.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 58999999999999999887 4899999999999999999999999999999999999764
No 159
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.47 E-value=1.1e-14 Score=101.31 Aligned_cols=63 Identities=14% Similarity=0.214 Sum_probs=58.5
Q ss_pred CHHHHhhcCCC---eEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGP---VKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~---I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|..||. |..|.|+.++. |.++|||||+|.+.++|++||. ||+..|+|+.|.|.++...
T Consensus 27 ~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 27 DVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINNE 92 (107)
T ss_dssp HHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCHH
T ss_pred HHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCHH
Confidence 58999999998 89999999987 9999999999999999999999 9999999999999998653
No 160
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.47 E-value=9.1e-14 Score=102.91 Aligned_cols=66 Identities=27% Similarity=0.499 Sum_probs=62.3
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|.|+.|.|.++.+..
T Consensus 19 ~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 84 (168)
T 1b7f_A 19 ELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGG 84 (168)
T ss_dssp HHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCS
T ss_pred HHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCc
Confidence 589999999999999999998899999999999999999999999999999999999999997543
No 161
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.46 E-value=1.1e-14 Score=106.23 Aligned_cols=66 Identities=23% Similarity=0.354 Sum_probs=55.9
Q ss_pred CHHHHhhcCCCeEEEE--EccC---CCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVY--LPKN---YYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~--i~~~---~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|. ++.+ ..++.++|||||+|.+.++|+.||..|||..|.|+.|.|++++...
T Consensus 61 ~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 131 (143)
T 3egn_A 61 DLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSAR 131 (143)
T ss_dssp HHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCSC
T ss_pred HHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 5899999999987641 1111 2478899999999999999999999999999999999999997654
No 162
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.46 E-value=1.1e-13 Score=105.15 Aligned_cols=65 Identities=23% Similarity=0.410 Sum_probs=59.2
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.+..++.++|||||+|.+.++|+.||.. +|..|+|+.|.|.++.++.
T Consensus 120 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQ 184 (196)
T ss_dssp HHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC---
T ss_pred HHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChh
Confidence 5899999999999999999998999999999999999999999985 8999999999999997654
No 163
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=9.6e-14 Score=94.19 Aligned_cols=60 Identities=20% Similarity=0.343 Sum_probs=52.5
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..| +.++.++. ||||+|.+.++|++||. |||..|+|+.|.|+++....
T Consensus 24 ~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 24 QLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp HHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred HHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 589999999999987 55555555 99999999999999999 99999999999999886543
No 164
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.46 E-value=8.5e-14 Score=108.00 Aligned_cols=63 Identities=22% Similarity=0.394 Sum_probs=58.1
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+||.|+.|.|+.+. +..+|||||+|.+.++|+.||..|||..|+|+.|.|.+++++
T Consensus 119 ~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 119 ALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp HHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred HHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 589999999999999999884 447899999999999999999999999999999999999754
No 165
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.46 E-value=1.5e-13 Score=106.62 Aligned_cols=65 Identities=23% Similarity=0.513 Sum_probs=61.8
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|++||+|+.|.|+.++.++.++|||||+|.+.++|+.||..||+..+.|+.|.|.++...
T Consensus 31 ~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~ 95 (213)
T 4f02_A 31 MLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD 95 (213)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred HHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccc
Confidence 58999999999999999999999999999999999999999999999999999999999988654
No 166
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1e-13 Score=94.22 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=55.0
Q ss_pred CHHHHhhcCCCeEEE-EEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDV-YLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v-~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+||.|..| .|+.++.++ .|||+|.+.++|+.||..|||..|+|+.|.|+++.+.
T Consensus 31 ~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 31 VLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp HHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred HHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 589999999999999 588876443 4999999999999999999999999999999999765
No 167
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=5e-14 Score=95.30 Aligned_cols=59 Identities=19% Similarity=0.299 Sum_probs=51.7
Q ss_pred CHHHHhhcCCC-eEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCC-CeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGP-VKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNH-SLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~-I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g-~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||. |..+.|. .+|||||+|.+.++|+.||..||| ..|+|+.|.|+++++..
T Consensus 24 ~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 24 DLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp HHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred HHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 58999999999 5555553 378999999999999999999999 99999999999997653
No 168
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.44 E-value=1.5e-13 Score=101.81 Aligned_cols=62 Identities=31% Similarity=0.597 Sum_probs=59.0
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCC--eEEEEEEc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGG--REIKIVFA 62 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g--~~i~V~~a 62 (190)
||+++|++||.|..|.|+.+..++.++|||||+|.+.++|+.||..|||..|.| ..|.|.+|
T Consensus 105 ~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 105 QLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 589999999999999999998899999999999999999999999999999988 99999986
No 169
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1e-13 Score=93.94 Aligned_cols=55 Identities=27% Similarity=0.441 Sum_probs=50.3
Q ss_pred HHHHhhcC-CCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 2 LRVAFERY-GPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 2 L~~~F~~~-G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
|+++|++| |+|..| ++ |||||+|.++++|+.||+.|||..|.|+.|.|.+|+...
T Consensus 30 L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~s 85 (96)
T 2diu_A 30 LRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNR 85 (96)
T ss_dssp HHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSC
T ss_pred HHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCc
Confidence 77999999 599998 23 999999999999999999999999999999999998654
No 170
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.43 E-value=1.9e-13 Score=100.79 Aligned_cols=62 Identities=34% Similarity=0.518 Sum_probs=57.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeE--EEEEEc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGRE--IKIVFA 62 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~--i~V~~a 62 (190)
||+++|.+||.|..|.|+.+..++.++|||||+|.+.++|+.||..|||..|.|.. |.|.||
T Consensus 104 ~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 104 ELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 58999999999999999999889999999999999999999999999999999965 788775
No 171
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.43 E-value=2.5e-13 Score=105.13 Aligned_cols=61 Identities=20% Similarity=0.300 Sum_probs=56.4
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
+|.++|++||.|..|.|+.+. +|||||+|.+.++|+.||..|||..|.|+.|.|.+++...
T Consensus 21 ~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 21 RVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp HHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred HHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 589999999999999998763 7999999999999999999999999999999999997543
No 172
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.41 E-value=2.8e-13 Score=104.29 Aligned_cols=65 Identities=31% Similarity=0.566 Sum_probs=58.3
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+||.|..|.|+.++.++..+|||||+|.+.++|+.||..||+..|.|+.|.|.++...
T Consensus 44 ~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~ 108 (216)
T 2qfj_A 44 TIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI 108 (216)
T ss_dssp HHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCC
T ss_pred HHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCc
Confidence 58999999999999999999989999999999999999999999999999999999999887543
No 173
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.40 E-value=2e-13 Score=91.59 Aligned_cols=58 Identities=19% Similarity=0.340 Sum_probs=53.2
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+| .|..|.|. .++|||||+|.+.++|+.||..|||..|+|+.|.|+++...
T Consensus 21 ~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 21 EVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp HHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred HHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 589999999 99999885 45899999999999999999999999999999999999654
No 174
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1e-12 Score=96.80 Aligned_cols=65 Identities=25% Similarity=0.366 Sum_probs=59.2
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|+.||..|||..|.|..|.|.++....
T Consensus 16 ~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 16 ILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp HHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred HHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 589999999999999999886 57789999999999999999999999999999999999986543
No 175
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=7e-14 Score=100.00 Aligned_cols=62 Identities=26% Similarity=0.419 Sum_probs=56.0
Q ss_pred CHHHHhhcCCCe----EEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEccc
Q 036035 1 ELRVAFERYGPV----KDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEE 64 (190)
Q Consensus 1 DL~~~F~~~G~I----~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~ 64 (190)
||+++|.+||.| ..|.|+.+. +|+++|||||+|.+.++|++||.. |+..|.|+.|.|..+..
T Consensus 39 dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~ 104 (123)
T 2dha_A 39 EVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRSTA 104 (123)
T ss_dssp HHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEECH
T ss_pred HHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECCH
Confidence 689999999986 688898884 899999999999999999999995 99999999999988854
No 176
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.40 E-value=6.2e-13 Score=100.87 Aligned_cols=64 Identities=28% Similarity=0.470 Sum_probs=59.6
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||.. ++..|.|+.|.|.++...
T Consensus 29 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~ 92 (196)
T 1l3k_A 29 SLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR 92 (196)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC-
T ss_pred HHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCc
Confidence 5899999999999999999999999999999999999999999985 999999999999998654
No 177
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.40 E-value=3.1e-13 Score=106.93 Aligned_cols=60 Identities=27% Similarity=0.574 Sum_probs=54.0
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCee------------CCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLI------------GGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l------------~g~~i~V~~a~~~~ 66 (190)
+|.++|++||+|+.|.|+.+ +|||||+|.+.++|+.||.+|+|..| .|..|.|.||+..+
T Consensus 159 ~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 159 RIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp HHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred HHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 58899999999999999865 79999999999999999999999999 89999999998654
No 178
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.39 E-value=5.7e-13 Score=107.56 Aligned_cols=64 Identities=28% Similarity=0.523 Sum_probs=58.6
Q ss_pred CHHHHhhcCCCeEEEEEccCCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYY-TGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~-t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||.++|.+||.|..|.|+.+.. |+.++|||||+|.+.++|+.|| .|||..|.|+.|.|.|++++
T Consensus 227 ~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 227 LLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred HHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 5899999999999999999876 6999999999999999999999 99999999999999999764
No 179
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.39 E-value=2e-13 Score=98.00 Aligned_cols=61 Identities=26% Similarity=0.325 Sum_probs=55.3
Q ss_pred CHHHHhhcCCCeE--EEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEccc
Q 036035 1 ELRVAFERYGPVK--DVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEE 64 (190)
Q Consensus 1 DL~~~F~~~G~I~--~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~ 64 (190)
||+++|.+| .|+ .|.|+.++. |.++|||||+|.+.++|++||. +++..|+|+.|.|..+..
T Consensus 58 dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 58 EIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp HHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEECH
T ss_pred HHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEECCH
Confidence 689999999 677 899999986 9999999999999999999998 577999999999988853
No 180
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.37 E-value=8.1e-13 Score=98.26 Aligned_cols=61 Identities=23% Similarity=0.434 Sum_probs=56.4
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeC---CeEEEEEEc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIG---GREIKIVFA 62 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~---g~~i~V~~a 62 (190)
||+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|+.||..|||..|. |+.|.|.||
T Consensus 111 ~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 111 DIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred HHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 589999999999999999886 6889999999999999999999999998776 489999997
No 181
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=4.4e-13 Score=94.22 Aligned_cols=60 Identities=22% Similarity=0.363 Sum_probs=51.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCC---CCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYT---GEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAE 63 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t---~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 63 (190)
||+++|.+||.|. +.++.+..+ |.++|||||+|.+.++|++||..|+ .|+|+.|.|..+.
T Consensus 24 ~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~~~ 86 (114)
T 2dnl_A 24 EITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCVSSP 86 (114)
T ss_dssp HHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEECCS
T ss_pred HHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEeccCC
Confidence 5899999999999 888888777 7999999999999999999999984 3777777766544
No 182
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.35 E-value=1.1e-12 Score=97.88 Aligned_cols=60 Identities=23% Similarity=0.461 Sum_probs=54.7
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+||.|..| ..++.++|||||+|.+.++|+.||..|||..|+|+.|.|.++.++
T Consensus 115 ~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 115 ELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 589999999988766 457889999999999999999999999999999999999999754
No 183
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.34 E-value=1.5e-12 Score=86.60 Aligned_cols=54 Identities=24% Similarity=0.495 Sum_probs=50.0
Q ss_pred CHHHHhhcC----C-------CeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 036035 1 ELRVAFERY----G-------PVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVF 61 (190)
Q Consensus 1 DL~~~F~~~----G-------~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~ 61 (190)
||+++|.+| | .|..|.|+.+ +|||||+|.+.++|++|| .|||..|+|+.|.|+.
T Consensus 22 ~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 22 AMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp HHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred HHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 589999999 8 9999999876 799999999999999999 9999999999999873
No 184
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.34 E-value=2.1e-12 Score=99.07 Aligned_cols=62 Identities=18% Similarity=0.277 Sum_probs=56.2
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEccc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEE 64 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~ 64 (190)
+|+++|.+||.|..|.|+.+. ++.++|||||+|++.++|+.||..++ .+|+|+.|.|.+++.
T Consensus 125 ~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 125 DIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred HHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 589999999999999999886 58899999999999999999998654 599999999999865
No 185
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.33 E-value=1.5e-12 Score=104.68 Aligned_cols=66 Identities=23% Similarity=0.333 Sum_probs=61.5
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENRK 67 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~~ 67 (190)
||+++|++||.|..|.|+.+. +|.++|||||+|.+.++|+.||..|||..|+|+.|.|.++.+...
T Consensus 201 ~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 201 ALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred HHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 589999999999999999886 789999999999999999999999999999999999999987643
No 186
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=2.5e-12 Score=86.33 Aligned_cols=56 Identities=23% Similarity=0.271 Sum_probs=52.0
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
+|.+.|.+||+|..|.|+.+ .+||+|.+.++|.+||. |||..|+|+.|+|+++.+.
T Consensus 31 ~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 31 ELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPS 86 (91)
T ss_dssp HHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCS
T ss_pred HHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCC
Confidence 48899999999999999987 48999999999999998 9999999999999999754
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.32 E-value=4e-12 Score=102.08 Aligned_cols=62 Identities=21% Similarity=0.413 Sum_probs=56.5
Q ss_pred HHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 2 L~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
|.++|.+||.|..|.|+. ++..+|||||+|.+.++|+.||..|||..|.|+.|.|++++...
T Consensus 30 L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 91 (282)
T 3pgw_A 30 LYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS 91 (282)
T ss_pred HHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCc
Confidence 458999999999998875 67889999999999999999999999999999999999996543
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.31 E-value=4.4e-12 Score=101.95 Aligned_cols=66 Identities=21% Similarity=0.469 Sum_probs=62.4
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||.++|.+||.|..|.|+.+..+|.++|||||+|.+.++|+.||..|||..|+|+.|.|.++....
T Consensus 111 ~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 111 QFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred HHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 589999999999999999999999999999999999999999999999999999999999997653
No 189
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.31 E-value=3.4e-12 Score=102.48 Aligned_cols=58 Identities=28% Similarity=0.398 Sum_probs=54.4
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeC-CeEEEEEEcc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIG-GREIKIVFAE 63 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~-g~~i~V~~a~ 63 (190)
||+++|.+||.|+.|.|+.++ +|||||+|.+.++|+.||..|||..|. |+.|.|+|++
T Consensus 223 ~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 223 MLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 589999999999999998764 689999999999999999999999999 9999999985
No 190
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.29 E-value=4.9e-12 Score=94.00 Aligned_cols=66 Identities=26% Similarity=0.431 Sum_probs=58.7
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCC--CcceEEEEEEcCHHHHHHHHHHhCCCeeC---CeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTG--EPRGFGFVKFRYAEDAAEAKQRLNHSLIG---GREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~--~~~G~afV~f~~~~~a~~Ai~~l~g~~l~---g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.++.++ .++|||||+|.+.++|+.||..|||..+. +..|.|.++....
T Consensus 19 ~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~ 89 (175)
T 3nmr_A 19 DLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEK 89 (175)
T ss_dssp HHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGC
T ss_pred HHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccc
Confidence 589999999999999999998887 89999999999999999999999998876 6778888776543
No 191
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.29 E-value=6.1e-12 Score=84.61 Aligned_cols=56 Identities=39% Similarity=0.536 Sum_probs=46.6
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCe--eCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSL--IGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~--l~g~~i~V~~a~~~ 65 (190)
||+++|++||.|+.|.|+.+ ++|||||+|.+.++|++ |++.. +.|..|.|.++.++
T Consensus 27 ~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 27 ELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp HHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC--
T ss_pred HHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCC
Confidence 58999999999999999875 68999999999999883 55654 45999999998754
No 192
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.28 E-value=4.4e-12 Score=93.75 Aligned_cols=62 Identities=32% Similarity=0.542 Sum_probs=57.1
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEccc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEE 64 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~ 64 (190)
||+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.||.. +..|+|+.|.|.++.+
T Consensus 19 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 19 NLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIP 80 (167)
T ss_dssp HHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCC
T ss_pred HHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccc
Confidence 5899999999999999999999999999999999999999999984 5789999999988754
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.27 E-value=3.8e-12 Score=99.65 Aligned_cols=60 Identities=25% Similarity=0.356 Sum_probs=56.2
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+||.|..|.|+.++ +|||||+|.+.++|+.||..|||..|.|+.|.|+++...
T Consensus 51 ~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 51 SLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp HHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred HHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 589999999999999999875 799999999999999999999999999999999999754
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.24 E-value=4.3e-12 Score=96.69 Aligned_cols=60 Identities=25% Similarity=0.356 Sum_probs=56.2
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+||.|..|.|+.++ +|||||+|.+.++|+.||..|||..|.|+.|.|.++...
T Consensus 20 ~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 20 SLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp HHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred HHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 589999999999999999875 789999999999999999999999999999999999764
No 195
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=4.9e-12 Score=84.56 Aligned_cols=59 Identities=37% Similarity=0.541 Sum_probs=48.4
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||+++|.+||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.|..|.|.++.+..
T Consensus 21 ~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 21 ELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp HHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCC
T ss_pred HHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCC
Confidence 58999999999999999876 589999999999999754331 345689999999987653
No 196
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.22 E-value=1.9e-11 Score=95.22 Aligned_cols=64 Identities=23% Similarity=0.289 Sum_probs=57.4
Q ss_pred CHHHHhhcCCCeEEEEEccCC----CCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEccc
Q 036035 1 ELRVAFERYGPVKDVYLPKNY----YTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEE 64 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~----~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~ 64 (190)
||.++|.+||.|..|.|+.+. .++..+||+||+|.+.++|++||..|||..|+|+.|.|++...
T Consensus 145 dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 145 EVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp HHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 578999999999999998543 4558899999999999999999999999999999999999753
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.22 E-value=1.6e-11 Score=96.11 Aligned_cols=60 Identities=22% Similarity=0.428 Sum_probs=54.6
Q ss_pred CHHHHhhcCC-CeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeC-CeEEEEEEcccC
Q 036035 1 ELRVAFERYG-PVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIG-GREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G-~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~-g~~i~V~~a~~~ 65 (190)
||+++|.+|| .|..|.|+.+ .+|||||+|.+.++|+.||..|||..|. |+.|.|.|+++.
T Consensus 167 ~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 167 DLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 5899999999 9999998653 2789999999999999999999999999 999999999753
No 198
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.21 E-value=8.5e-12 Score=95.04 Aligned_cols=60 Identities=22% Similarity=0.416 Sum_probs=54.8
Q ss_pred CHHHHhhcCC-CeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeC-CeEEEEEEcccC
Q 036035 1 ELRVAFERYG-PVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIG-GREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G-~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~-g~~i~V~~a~~~ 65 (190)
||+++|.+|| .|..|.|+.+. +|||||+|.+.++|+.||..|||..|. |+.|.|.|++++
T Consensus 136 ~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 136 DLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred HHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 5899999999 99999987642 799999999999999999999999999 999999999753
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.20 E-value=1.8e-11 Score=98.67 Aligned_cols=65 Identities=18% Similarity=0.279 Sum_probs=54.3
Q ss_pred CHHHHhhcCC-CeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 1 ELRVAFERYG-PVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 1 DL~~~F~~~G-~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
||.++|.+|| .|..|.|+.+.. +.++|||||+|.+.++|+.||..|||..|.|+.|.|.++.+..
T Consensus 133 ~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 133 NIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp HHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred HHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 5899999999 999999998864 7789999999999999999999999999999999999987654
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.17 E-value=3.2e-11 Score=96.20 Aligned_cols=64 Identities=27% Similarity=0.399 Sum_probs=56.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCC-CeeC---CeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNH-SLIG---GREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g-~~l~---g~~i~V~~a~~~ 65 (190)
||+++|.+||.|..|.|+.+ .+|.++|||||+|.+.++|+.||..||+ ..+. ++.|.|.++...
T Consensus 112 ~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 112 LLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 58999999999999999999 5899999999999999999999999954 4444 999999998754
No 201
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.16 E-value=3e-11 Score=93.35 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=52.4
Q ss_pred CHHHHhhcCCCe--EEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCe----EEEEEEc
Q 036035 1 ELRVAFERYGPV--KDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGR----EIKIVFA 62 (190)
Q Consensus 1 DL~~~F~~~G~I--~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~----~i~V~~a 62 (190)
||+++|++||.| +.|.|+.+. +..+|||||+|.+.++|+.||..|||.+|.|. .|.|.+|
T Consensus 139 ~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 139 NFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred HHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 589999999999 888888774 55679999999999999999999999999986 4667665
No 202
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.15 E-value=4.4e-11 Score=95.40 Aligned_cols=59 Identities=32% Similarity=0.688 Sum_probs=54.6
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||.++|.+||.|..|.|+.+ +|||||+|.+.++|+.||..|||..|.|+.|.|.++.+.
T Consensus 38 ~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 38 DFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp HHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred HHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 58999999999999999765 799999999999999999999999999999999998653
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.14 E-value=6e-11 Score=98.43 Aligned_cols=57 Identities=25% Similarity=0.484 Sum_probs=48.6
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeC---Ce--EEEEEEcc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIG---GR--EIKIVFAE 63 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~---g~--~i~V~~a~ 63 (190)
||+++|++||+|..|.|+. .+|||||+|.+.++|++||+.|||.+|. |. .|.|.+++
T Consensus 36 ~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 36 QLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp HHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred HHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 5899999999999987764 3799999999999999999999999883 44 46667764
No 204
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.12 E-value=7.3e-12 Score=93.43 Aligned_cols=63 Identities=33% Similarity=0.407 Sum_probs=54.5
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+||.|.. .++.+..++.++|||||+|.+.++|+.||+ |||..|.|+.|.|.++...
T Consensus 29 ~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~ 91 (175)
T 1fje_B 29 ELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGR 91 (175)
T ss_dssp HHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCS
T ss_pred HHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCc
Confidence 58889999998766 345555678889999999999999999995 9999999999999998754
No 205
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=7.2e-11 Score=79.59 Aligned_cols=54 Identities=22% Similarity=0.283 Sum_probs=49.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAE 63 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 63 (190)
+|.+.|.+||+|+.|.|+.+ -+||+|.+.++|.+||. |||.+|+|+.|+|.+..
T Consensus 40 ~L~~~F~~~G~Vilvr~v~d--------~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 40 ELMQTLGSYGTIVLVRINQG--------QMLVTFADSHSALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHHHHHHSCCSEEEEETT--------EEEEECSCSHHHHHHHH-GGGSEETTEEEEEECCC
T ss_pred HHHHHHHHCCCEEEEEEecC--------cEEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccC
Confidence 48899999999999999988 39999999999999999 99999999999998753
No 206
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.05 E-value=2.9e-10 Score=84.24 Aligned_cols=58 Identities=22% Similarity=0.473 Sum_probs=51.3
Q ss_pred CHHHHhhcC----C-------CeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERY----G-------PVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~----G-------~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+| | .|..+.+..+ +|||||+|.+.++|+.|| .|||..|.|+.|.|.++...
T Consensus 20 ~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 20 AMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDY 88 (172)
T ss_dssp HHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSC
T ss_pred HHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCccc
Confidence 589999999 6 7777777654 799999999999999999 89999999999999987654
No 207
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.03 E-value=3.2e-10 Score=85.83 Aligned_cols=58 Identities=22% Similarity=0.456 Sum_probs=50.2
Q ss_pred CHHHHhhcC----C-------CeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 036035 1 ELRVAFERY----G-------PVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEEN 65 (190)
Q Consensus 1 DL~~~F~~~----G-------~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 65 (190)
||+++|.+| | .|..+.+.. .+|||||+|.+.++|+.|| .|||..|.|+.|.|.++...
T Consensus 20 ~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~------~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 20 AMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDY 88 (198)
T ss_dssp HHHHHHHHHHHHHTCCSSSSCSEEEEEEET------TTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCC
T ss_pred HHHHHHHHHHhhcccccCCCCceEEeEecC------CCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCC
Confidence 589999999 5 566666644 4899999999999999999 79999999999999998654
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=2.7e-09 Score=75.60 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=51.1
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcC-HHHHHHHHHHhC--CCeeCCeEEEEEEccc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRY-AEDAAEAKQRLN--HSLIGGREIKIVFAEE 64 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~-~~~a~~Ai~~l~--g~~l~g~~i~V~~a~~ 64 (190)
||+++|.+||+|.+|+|+.+. .+|||.|.+ ..+|+.||..|| +.+|.|..++|++...
T Consensus 35 dLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 35 DLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp HHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred HHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCC
Confidence 589999999999999999884 369999999 899999999995 6789999999887653
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.28 E-value=1.4e-06 Score=60.06 Aligned_cols=55 Identities=18% Similarity=0.149 Sum_probs=49.4
Q ss_pred HHHHhhcC-----CCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEc
Q 036035 2 LRVAFERY-----GPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFA 62 (190)
Q Consensus 2 L~~~F~~~-----G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a 62 (190)
|..+++.+ |.|+.|.+..| -+-|+|+|.+...|.+|..+|||.+|.|++|.|.-.
T Consensus 38 Ir~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 38 ICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp HHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred HHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 56788888 99999988888 578999999999999999999999999999998644
No 210
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.92 E-value=4.5e-05 Score=53.40 Aligned_cols=55 Identities=13% Similarity=0.245 Sum_probs=45.7
Q ss_pred HHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCC-eEEEEEEcc
Q 036035 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGG-REIKIVFAE 63 (190)
Q Consensus 2 L~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g-~~i~V~~a~ 63 (190)
|..+|.+||+|++...... ..+-.|.|.+..+|++||. .||..|.| -.|-|..+.
T Consensus 40 VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 40 ILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp HHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred HHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 6789999999998876322 4699999999999999999 79999985 667777754
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.66 E-value=0.00023 Score=48.58 Aligned_cols=59 Identities=24% Similarity=0.282 Sum_probs=50.8
Q ss_pred HHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 036035 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENR 66 (190)
Q Consensus 2 L~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 66 (190)
|+++|.+|+++....+... -.=..|.|.+.++|..|-..||+..|+|..|+|.++++..
T Consensus 27 ~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 27 FESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLH 85 (104)
T ss_dssp HHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCSS
T ss_pred HHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCCC
Confidence 6889999998887766654 2357899999999999999999999999999999998543
No 212
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.30 E-value=0.00023 Score=50.56 Aligned_cols=61 Identities=10% Similarity=0.180 Sum_probs=45.2
Q ss_pred HHHHhhcCCCeEE-EEEccCC--------CCC-----CcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Q 036035 2 LRVAFERYGPVKD-VYLPKNY--------YTG-----EPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAE 63 (190)
Q Consensus 2 L~~~F~~~G~I~~-v~i~~~~--------~t~-----~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 63 (190)
|.++|++||.|++ +.+..+. ... ...++..|+|.+..+|+.||. .||..|.|..|-|....
T Consensus 23 VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 23 VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEETTEECEEEECC
T ss_pred HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEeCcEEEEEEECC
Confidence 5688999999987 2222100 000 124688999999999999999 79999999988888764
No 213
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.08 E-value=0.00035 Score=50.69 Aligned_cols=35 Identities=14% Similarity=-0.029 Sum_probs=28.1
Q ss_pred EEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCC
Q 036035 14 DVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHS 50 (190)
Q Consensus 14 ~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~ 50 (190)
.+.|+.+. ...+|||||+|.+.++|++||..+++.
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 35566664 357999999999999999999888764
No 214
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=97.06 E-value=0.00022 Score=51.46 Aligned_cols=41 Identities=17% Similarity=0.045 Sum_probs=36.7
Q ss_pred CCCcceEEEEEEcCHHHHHHHHHHh-CCCeeCCeEEEEEEccc
Q 036035 23 TGEPRGFGFVKFRYAEDAAEAKQRL-NHSLIGGREIKIVFAEE 64 (190)
Q Consensus 23 t~~~~G~afV~f~~~~~a~~Ai~~l-~g~~l~g~~i~V~~a~~ 64 (190)
....+|+++|+|.+.++|++||..| ||..|+| .|.|.++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3456899999999999999999999 9999999 999988754
No 215
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.35 E-value=0.0024 Score=42.92 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=31.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHh
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRL 47 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l 47 (190)
||+++|..||.|. |..+.| .-|||.|.+.+.|..||..|
T Consensus 31 DI~~lFs~fggv~-I~WidD-------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 31 DLYQLFSAFGNIQ-ISWIDD-------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp HHHHHHTTTCSCC-CEEEET-------TEEEEECSCHHHHHHHHHHH
T ss_pred HHHHHhhccCCEE-EEEEcC-------CeEEEEecCHHHHHHHHHhc
Confidence 7999999999554 445545 38999999999999999866
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.35 E-value=0.0028 Score=42.72 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=32.3
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLN 48 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~ 48 (190)
||+++|..||.| .|..+.| .-|||.|.+.+.|..||..|.
T Consensus 21 Di~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 21 DLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp HHHHHTTTSEEE-EEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred HHHHHHhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 799999999944 4555555 389999999999999999664
No 217
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.91 E-value=0.076 Score=35.94 Aligned_cols=53 Identities=25% Similarity=0.246 Sum_probs=40.9
Q ss_pred HHHHhhc-----CCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Q 036035 2 LRVAFER-----YGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAE 63 (190)
Q Consensus 2 L~~~F~~-----~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 63 (190)
|+-+|++ -|+|..|...- +-|+|+|.+.+.|+..|+ ...+.|++..|.|....
T Consensus 25 L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 25 LTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLSLRPAP 82 (104)
T ss_dssp HHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECC
T ss_pred heEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCC
Confidence 5667887 26888887653 489999999999998887 34678999999886543
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.49 E-value=0.015 Score=49.79 Aligned_cols=40 Identities=13% Similarity=0.401 Sum_probs=30.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHH
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQ 45 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~ 45 (190)
||.++|++||.|..+.+..++ .-||.|||.+.++++.++.
T Consensus 68 ~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 68 KFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred HHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 578999999999999777663 4699999999998887654
No 219
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=94.14 E-value=0.075 Score=33.55 Aligned_cols=44 Identities=11% Similarity=0.243 Sum_probs=32.7
Q ss_pred CeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Q 036035 11 PVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAE 63 (190)
Q Consensus 11 ~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 63 (190)
.|-.|.|..+ |.||+... ..++.++..|++..+.|+.|.|+.++
T Consensus 32 ~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 32 DIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp GEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred hccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 4556777543 99999985 67888999999999999999998764
No 220
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=91.16 E-value=1.5 Score=28.77 Aligned_cols=62 Identities=13% Similarity=0.083 Sum_probs=42.0
Q ss_pred HHHhhcCCCeEEEEEccCCCCCC--cceEEEEEEcCHHHHHHHHHHhCCCeeC---Ce--EEEEEEccc
Q 036035 3 RVAFERYGPVKDVYLPKNYYTGE--PRGFGFVKFRYAEDAAEAKQRLNHSLIG---GR--EIKIVFAEE 64 (190)
Q Consensus 3 ~~~F~~~G~I~~v~i~~~~~t~~--~~G~afV~f~~~~~a~~Ai~~l~g~~l~---g~--~i~V~~a~~ 64 (190)
.+.+..+.++.....+..+.+.+ ...-|||.|.+.+++..-.+.++|+.+. |. ...|++|.-
T Consensus 19 ~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~VE~AP~ 87 (91)
T 1uw4_A 19 QEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPF 87 (91)
T ss_dssp HHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEEECSS
T ss_pred HHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEEEEcCC
Confidence 34455555666655555544433 3467999999999999999999999774 32 235777743
No 221
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=89.67 E-value=6.8 Score=32.94 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=10.2
Q ss_pred EcCHHHHHHHHHHhCCCeeCCeEE
Q 036035 34 FRYAEDAAEAKQRLNHSLIGGREI 57 (190)
Q Consensus 34 f~~~~~a~~Ai~~l~g~~l~g~~i 57 (190)
|..-++.+.|..+|. .|+|..|
T Consensus 148 FV~F~~~e~A~~Ai~--~lng~~i 169 (437)
T 3pgw_S 148 FIEYEHERDMHSAYK--HADGKKI 169 (437)
T ss_pred EEeeccHHHHHHHHH--HcCCCEE
Confidence 334444555555443 2445444
No 222
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=83.36 E-value=0.069 Score=38.61 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=17.8
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFR 35 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~ 35 (190)
||.++|...|.|+..... +||+||+..
T Consensus 3 ~~~~l~~~~G~Vkwfn~~--------kGfGFI~~~ 29 (148)
T 3ts2_A 3 DEPQLLHGAGICKWFNVR--------MGFGFLSMT 29 (148)
T ss_dssp ---CCEEEEEEEEEEETT--------TTEEEEEEE
T ss_pred cccccccceeEEEEEECC--------CCeeEEeeC
Confidence 566777778877765332 789999976
No 223
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=82.98 E-value=3 Score=27.19 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=27.4
Q ss_pred CeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCC
Q 036035 11 PVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHS 50 (190)
Q Consensus 11 ~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~ 50 (190)
+|..|.++.. -+||.||++...+++..+|..+.|.
T Consensus 39 ~i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 39 DVYSILASES-----LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CEEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cEEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCCc
Confidence 3666766654 4899999999998888888877764
No 224
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=74.42 E-value=5.2 Score=26.52 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=37.9
Q ss_pred HHhhcCCCeEEEEE---ccCCCCCC--cceEEEEEEcCHHHHHHHHHHhCCCeeC---Ce--EEEEEEcc
Q 036035 4 VAFERYGPVKDVYL---PKNYYTGE--PRGFGFVKFRYAEDAAEAKQRLNHSLIG---GR--EIKIVFAE 63 (190)
Q Consensus 4 ~~F~~~G~I~~v~i---~~~~~t~~--~~G~afV~f~~~~~a~~Ai~~l~g~~l~---g~--~i~V~~a~ 63 (190)
+++++.+.+..++. +..+.+.+ .-.-|||.|.+.+++..-.+.++|..+. |. ...|++|.
T Consensus 25 ~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~VE~AP 94 (97)
T 2l08_A 25 QLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAP 94 (97)
T ss_dssp HHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEEEECC
T ss_pred HHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEEEecC
Confidence 45556665544332 22222222 1246899999999999999999998774 22 34577764
No 225
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=65.93 E-value=6.2 Score=26.53 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=26.9
Q ss_pred CeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCC
Q 036035 11 PVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHS 50 (190)
Q Consensus 11 ~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~ 50 (190)
.|..|..+.. -+||-|||=..+.++..||..+.+.
T Consensus 40 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecCC-----CceEEEEEeCCHHHHHHHHhcccce
Confidence 3666644433 4899999999999999999877654
No 226
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=57.32 E-value=12 Score=32.10 Aligned_cols=43 Identities=19% Similarity=-0.042 Sum_probs=28.7
Q ss_pred CHHHHhh--cCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHH
Q 036035 1 ELRVAFE--RYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAK 44 (190)
Q Consensus 1 DL~~~F~--~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai 44 (190)
||..+|. .+|-|+.+.|..-+. ......+++.|.+.+++..|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~-p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPK-PPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEEC-CSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEec-CCeEEEEEEEeCCHHHHHHHH
Confidence 4566673 689999987766542 222346788998888776644
No 227
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=56.59 E-value=15 Score=32.59 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=33.1
Q ss_pred CHHHHhh----cCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHh
Q 036035 1 ELRVAFE----RYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRL 47 (190)
Q Consensus 1 DL~~~F~----~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l 47 (190)
||..+|- .+|-|+++.|..-+.. ....+++|.|.+.++|..|+..+
T Consensus 359 DL~~L~iGSEGTLGIITeatLrL~P~P-~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 359 DIHHFIMGSEGTLGVITEATIKIRPTP-EYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CTHHHHTTCTTSSCEEEEEEEECEECC-SEEEEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHhccCCCcCcceeeeeeeeccCC-ccccccccccCCchhhhhhHHHH
Confidence 5677773 5788998877654422 23457889999999998888765
No 228
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=54.85 E-value=41 Score=21.92 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=18.2
Q ss_pred ceEEEEEEcCHHHHHHHHHHh
Q 036035 27 RGFGFVKFRYAEDAAEAKQRL 47 (190)
Q Consensus 27 ~G~afV~f~~~~~a~~Ai~~l 47 (190)
-|-|.|.|.+.++...||..|
T Consensus 46 dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 46 DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SSCEEEEESSHHHHHHHHHHH
T ss_pred cCeeEEEecCChHHHHHHHHH
Confidence 357999999999999999876
No 229
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=52.38 E-value=16 Score=25.87 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=26.9
Q ss_pred eEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCC
Q 036035 12 VKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHS 50 (190)
Q Consensus 12 I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~ 50 (190)
|..|.++.. -+||.||++...++...+|..+.|.
T Consensus 33 i~~v~vp~~-----fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPSR-----VKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeecC-----CCcEEEEEEEchHHHHHHHhCCCCE
Confidence 566666643 4899999999988888898877774
No 230
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=51.58 E-value=11 Score=28.36 Aligned_cols=25 Identities=4% Similarity=-0.113 Sum_probs=22.5
Q ss_pred cceEEEEEEcCHHHHHHHHHHhCCC
Q 036035 26 PRGFGFVKFRYAEDAAEAKQRLNHS 50 (190)
Q Consensus 26 ~~G~afV~f~~~~~a~~Ai~~l~g~ 50 (190)
-+||-|||=..+.++..||+.|.+.
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~v 172 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDI 172 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhh
Confidence 4899999999999999999988775
No 231
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=48.31 E-value=3.8 Score=28.38 Aligned_cols=28 Identities=7% Similarity=-0.129 Sum_probs=0.0
Q ss_pred eEEEEEEcCHHHHHHHHHHhCCCeeCCe
Q 036035 28 GFGFVKFRYAEDAAEAKQRLNHSLIGGR 55 (190)
Q Consensus 28 G~afV~f~~~~~a~~Ai~~l~g~~l~g~ 55 (190)
-++|++|+++..+..||..|+|....|.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~ 32 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGR 32 (135)
T ss_dssp ----------------------------
T ss_pred ccccccccCCCchhhhhhhccCCCCCCC
Confidence 3678888888888899998888765543
No 232
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.38 E-value=11 Score=23.14 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=8.4
Q ss_pred ceEEEEEEcC
Q 036035 27 RGFGFVKFRY 36 (190)
Q Consensus 27 ~G~afV~f~~ 36 (190)
++.|||.|++
T Consensus 37 ~~~ClV~FeD 46 (68)
T 2e5p_A 37 REVCLVQFED 46 (68)
T ss_dssp TTEEEEEETT
T ss_pred CcEEEEEEcc
Confidence 5689999986
No 233
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=45.65 E-value=45 Score=22.10 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=31.4
Q ss_pred cCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Q 036035 8 RYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAE 63 (190)
Q Consensus 8 ~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 63 (190)
.||.-+++....+ -..|-..+++|..+||+.|+-. ..-+.|+|-+..
T Consensus 40 ~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~ 86 (103)
T 2cu1_A 40 AFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVI 86 (103)
T ss_dssp HHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEE
T ss_pred HhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEec
Confidence 4787777765522 4678899999999999987654 233334444443
No 234
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=42.80 E-value=13 Score=23.34 Aligned_cols=11 Identities=27% Similarity=0.401 Sum_probs=8.7
Q ss_pred ceEEEEEEcCH
Q 036035 27 RGFGFVKFRYA 37 (190)
Q Consensus 27 ~G~afV~f~~~ 37 (190)
.+.|||.|++.
T Consensus 54 ~e~ClV~F~D~ 64 (79)
T 2m0o_A 54 REVCLVQFEDD 64 (79)
T ss_dssp TTEEEEEETTS
T ss_pred CCEEEEEEcCC
Confidence 55899999863
No 235
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=42.00 E-value=16 Score=26.73 Aligned_cols=41 Identities=22% Similarity=0.274 Sum_probs=27.0
Q ss_pred HHHHh--hcCCCeEEEEEccCCCCCCcceEEEEEEcC-HHHHHHHHH
Q 036035 2 LRVAF--ERYGPVKDVYLPKNYYTGEPRGFGFVKFRY-AEDAAEAKQ 45 (190)
Q Consensus 2 L~~~F--~~~G~I~~v~i~~~~~t~~~~G~afV~f~~-~~~a~~Ai~ 45 (190)
|.+.| ..|..+. |..+.++ ..+.|+|.|+|.. ......|+.
T Consensus 38 l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 38 LRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp HHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred HHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 67766 8898876 4444443 2357899999975 445555665
No 236
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=41.56 E-value=21 Score=23.51 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=26.7
Q ss_pred cCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCC
Q 036035 8 RYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHS 50 (190)
Q Consensus 8 ~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~ 50 (190)
.||.-.++..+.+ --.|-..+++|..+||+.|+-.
T Consensus 52 afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs 86 (100)
T 2npt_B 52 AFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRS 86 (100)
T ss_dssp HHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHHC
T ss_pred HhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhccC
Confidence 4788777766643 4678889999999999987643
No 237
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=41.02 E-value=33 Score=22.72 Aligned_cols=28 Identities=14% Similarity=0.333 Sum_probs=14.2
Q ss_pred CeEEE-EEccCCCCCCcceEEEEEEcCHHH
Q 036035 11 PVKDV-YLPKNYYTGEPRGFGFVKFRYAED 39 (190)
Q Consensus 11 ~I~~v-~i~~~~~t~~~~G~afV~f~~~~~ 39 (190)
.++.| .|......|++.|||+| |.+.+.
T Consensus 48 ~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~ 76 (101)
T 1xn9_A 48 ELLVIQRIKTEYGMQESKGYAKL-YEDADR 76 (101)
T ss_dssp TTEEEEEEEECSSSSEEEEEEEE-CSCHHH
T ss_pred CEEEEEeeEecCCCceEEEEEEE-ECCHHH
Confidence 34444 34444445666777766 444333
No 238
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=40.49 E-value=77 Score=22.29 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=27.7
Q ss_pred HHhhcCCCeEEEE-----EccCCCC----------CCcceEEEEEEcCHHHHHHHHHH
Q 036035 4 VAFERYGPVKDVY-----LPKNYYT----------GEPRGFGFVKFRYAEDAAEAKQR 46 (190)
Q Consensus 4 ~~F~~~G~I~~v~-----i~~~~~t----------~~~~G~afV~f~~~~~a~~Ai~~ 46 (190)
++|..||.+..|. |+..+.| +..--|.+|+|.+.+...+|..+
T Consensus 52 ~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~k 109 (141)
T 2okq_A 52 PLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQK 109 (141)
T ss_dssp HHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHH
Confidence 6789999776543 3322222 22234899999998887777643
No 239
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=39.70 E-value=44 Score=22.37 Aligned_cols=25 Identities=8% Similarity=0.264 Sum_probs=14.2
Q ss_pred EEccCCCCCCcceEEEEEEcCHHHHH
Q 036035 16 YLPKNYYTGEPRGFGFVKFRYAEDAA 41 (190)
Q Consensus 16 ~i~~~~~t~~~~G~afV~f~~~~~a~ 41 (190)
.|......|++.|||.| |.+.+.|.
T Consensus 63 ~~~T~fG~gkstG~a~I-Yds~e~ak 87 (107)
T 2v94_A 63 YIRSYFGSYKSKGYAKY-YYDKDRML 87 (107)
T ss_dssp EEECCTTCSEEEEEEEE-ESSHHHHH
T ss_pred eeEecCCCceEEEEEEE-ECCHHHHH
Confidence 34444445667788866 55544443
No 240
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=38.99 E-value=57 Score=18.98 Aligned_cols=38 Identities=13% Similarity=0.001 Sum_probs=24.8
Q ss_pred HHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHH
Q 036035 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQR 46 (190)
Q Consensus 2 L~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~ 46 (190)
|+..+.+ ..|..+.|... .+-+.|+|.+.++...||..
T Consensus 23 ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 23 VKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp HHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHH
Confidence 4566667 66776766544 46777888755666667764
No 241
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=38.10 E-value=42 Score=22.29 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=15.3
Q ss_pred CeEEE-EEccCCCCCCcceEEEEEEcCHHHH
Q 036035 11 PVKDV-YLPKNYYTGEPRGFGFVKFRYAEDA 40 (190)
Q Consensus 11 ~I~~v-~i~~~~~t~~~~G~afV~f~~~~~a 40 (190)
.++.| .|......|++.|||.| |.+.+.|
T Consensus 48 d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~a 77 (102)
T 1ywx_A 48 QVLVVDTLDQIFGKLEAEGYAKI-YNDEKAM 77 (102)
T ss_dssp TTEEEEEEEECSSSSEEEEEEEE-CSCHHHH
T ss_pred CEEEEEccEecCCCceEEEEEEE-ECCHHHH
Confidence 34444 34444445667777766 4444443
No 242
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=37.47 E-value=24 Score=22.93 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=31.9
Q ss_pred cCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Q 036035 8 RYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAE 63 (190)
Q Consensus 8 ~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 63 (190)
.||.-.++.++.+ --.|-..+++|..+||+.|+-. ..-+.|.|-+..
T Consensus 36 afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs-~~mkSLRIlL~~ 82 (94)
T 2jrh_A 36 VFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRS-SSMKSLRILLLS 82 (94)
T ss_dssp HHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHHS-TTTTEEEEEEEE
T ss_pred HhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhccC-ccccceEEEEEc
Confidence 4788777766643 3578888999999999987643 333444555443
No 243
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=36.52 E-value=46 Score=28.15 Aligned_cols=46 Identities=20% Similarity=0.139 Sum_probs=30.5
Q ss_pred CHHHHhh----cCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHh
Q 036035 1 ELRVAFE----RYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRL 47 (190)
Q Consensus 1 DL~~~F~----~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l 47 (190)
||..+|- .+|-|+.+.|...+.. .....+++.|.+.++|..|+..+
T Consensus 202 dl~~l~~Gs~GtlGIIt~~tl~l~p~p-~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 202 DLRDLFIGAEGTLGIITAATLKLFPKP-RAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp CCHHHHTTSTTSSCEEEEEEEECEECC-SEEEEEEEEESCHHHHHHHHHHH
T ss_pred CHHHHhccCCCCcEEEEEEEEEEeecC-ceeEEEEEEcCCHHHHHHHHHHH
Confidence 3445543 4577888877654422 23456789999999888877655
No 244
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=35.79 E-value=1e+02 Score=20.91 Aligned_cols=44 Identities=7% Similarity=0.010 Sum_probs=32.7
Q ss_pred HHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCC
Q 036035 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNH 49 (190)
Q Consensus 2 L~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g 49 (190)
+.+.+..+-+|..|..+. |...-++.|.+.+.++.+..+..+.+
T Consensus 81 ~~~~l~~~p~V~~~~~~t----G~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 81 FKSYIQTLPNIEFCYRIA----GAACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp HHHHHHTCTTEEEEEEEE----SSSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHhcChhhheeeeee----CCCCEEEEEEECCHHHHHHHHHHhcC
Confidence 345566788898887664 33455778888999999998887765
No 245
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=35.69 E-value=49 Score=22.69 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=19.6
Q ss_pred CCCeEEEEEccCCCCCCcceEEEEE-EcCHHHHHHHHHHhC
Q 036035 9 YGPVKDVYLPKNYYTGEPRGFGFVK-FRYAEDAAEAKQRLN 48 (190)
Q Consensus 9 ~G~I~~v~i~~~~~t~~~~G~afV~-f~~~~~a~~Ai~~l~ 48 (190)
+-.|+.|.|-.|- ....+||. |.+.++.+.++..|+
T Consensus 43 ~vtVt~V~vS~Dl----~~AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDF----SACRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTS----CCEEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCC----cEEEEEEEecCChhhHHHHHHHHH
Confidence 4578888887662 23345555 444444444444443
No 246
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=35.17 E-value=7.3 Score=24.32 Aligned_cols=15 Identities=7% Similarity=0.348 Sum_probs=12.4
Q ss_pred CHHHHhhcCCCeEEE
Q 036035 1 ELRVAFERYGPVKDV 15 (190)
Q Consensus 1 DL~~~F~~~G~I~~v 15 (190)
||++++.+||.|+.+
T Consensus 7 DVqQLLK~fG~~IY~ 21 (72)
T 2nn4_A 7 DVQQLLKTFGHIVYF 21 (72)
T ss_dssp HHHHHHHTTTCCCCC
T ss_pred HHHHHHHHCCEEEEe
Confidence 688999999987753
No 247
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=34.64 E-value=8.9 Score=23.93 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=19.8
Q ss_pred ceEEEEEEcCHHHHHHHHHHhC---C--CeeCCeEEEEEEccc
Q 036035 27 RGFGFVKFRYAEDAAEAKQRLN---H--SLIGGREIKIVFAEE 64 (190)
Q Consensus 27 ~G~afV~f~~~~~a~~Ai~~l~---g--~~l~g~~i~V~~a~~ 64 (190)
+|||||+-.+-+|+---+..|. | ....|..|..++...
T Consensus 12 KGfGFI~~~dG~DvFvH~s~i~~~~g~~~l~~G~~V~F~~~~g 54 (74)
T 2kcm_A 12 KKYGFIQGDDGESYFLHFSELLDKKDEGKLVKGSMVHFDPTPT 54 (74)
T ss_dssp TTEEEEEETTSCEECCCGGGSSCSGGGTTCCTTSEEEEEEECT
T ss_pred CCEEEEecCCCceEEEEhhhcccCCCCCCCCCCCEEEEEEEEC
Confidence 8999998765332221122222 2 123477776666543
No 248
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=34.63 E-value=25 Score=30.39 Aligned_cols=37 Identities=11% Similarity=-0.053 Sum_probs=25.2
Q ss_pred cCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHH
Q 036035 8 RYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQ 45 (190)
Q Consensus 8 ~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~ 45 (190)
.+|-|+++.|..-+.. .....+++.|.+.++|..|+.
T Consensus 258 tlGiIt~~tl~l~p~p-~~~~~~~~~f~~~~~a~~~~~ 294 (560)
T 1e8g_A 258 NMGIVTKIGIWLMPNP-GGYQSYLITLPKDGDLKQAVD 294 (560)
T ss_dssp SSEEEEEEEEECEECC-SCEEEEEEEECSTTHHHHHHH
T ss_pred cEEEEEEEEEEEEeCC-CceEEEEEEcCCHHHHHHHHH
Confidence 4788888877655432 224577888998888766653
No 249
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=34.60 E-value=23 Score=23.59 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=25.8
Q ss_pred cCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCC
Q 036035 8 RYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHS 50 (190)
Q Consensus 8 ~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~ 50 (190)
.||.-.++..+.+ --.|-..+++|..+||+.|+-.
T Consensus 63 afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDrs 97 (111)
T 2c60_A 63 VFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRS 97 (111)
T ss_dssp HHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHHC
T ss_pred HhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhccC
Confidence 4777777766533 3467788999999999987643
No 250
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=34.51 E-value=20 Score=21.92 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=8.6
Q ss_pred ceEEEEEEcC
Q 036035 27 RGFGFVKFRY 36 (190)
Q Consensus 27 ~G~afV~f~~ 36 (190)
.|.|+|.|++
T Consensus 41 ~gtC~V~F~D 50 (66)
T 2eqj_A 41 KQSCFIIFED 50 (66)
T ss_dssp TTEEEEEETT
T ss_pred CcEEEEEEcc
Confidence 6899999986
No 251
>4ar0_A Type IV pilus biogenesis and competence protein P; transport, secretin type II secretion system; NMR {Neisseria meningitidis}
Probab=33.99 E-value=19 Score=24.89 Aligned_cols=59 Identities=10% Similarity=0.062 Sum_probs=35.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEc--CHHHHHHHHHHhCCC--eeCCeEEEEEEc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFR--YAEDAAEAKQRLNHS--LIGGREIKIVFA 62 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~--~~~~a~~Ai~~l~g~--~l~g~~i~V~~a 62 (190)
||.++|...+.+..+.|+.++.- .|-.-|.+. ..++|..+|..++|. ...|..|.|..+
T Consensus 42 ~i~~vl~~la~~tg~NiV~d~~V---~G~VTl~l~~v~~~~al~~iL~~~gl~~~~~gnvi~I~p~ 104 (128)
T 4ar0_A 42 EIRTILQILAKESGMNIVASDSV---NGKMTLSLKDVPWDQALDLVMQARNLDMRQQGNIVNIAPR 104 (128)
T ss_dssp EHHHHHHHHHHTTCCEEEECTTC---CCEEEEEEEEEEHHHHHHHHHHHHTEEEEEETTEEEEEEH
T ss_pred CHHHHHHHHHHHHCCcEEEcCCC---CceeeEeecCCCHHHHHHHHHHHcCceEEEECCEEEEECh
Confidence 46667766666665655555422 233334443 456777788778886 345888888754
No 252
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.29 E-value=9 Score=23.08 Aligned_cols=11 Identities=18% Similarity=0.205 Sum_probs=8.9
Q ss_pred ceEEEEEEcCH
Q 036035 27 RGFGFVKFRYA 37 (190)
Q Consensus 27 ~G~afV~f~~~ 37 (190)
+..|||.|++.
T Consensus 35 ~~~ClV~FeD~ 45 (63)
T 2e5q_A 35 KQSCLVTFEDN 45 (63)
T ss_dssp TSEEEEEETTS
T ss_pred CCEEEEEEccC
Confidence 57899999863
No 253
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=33.21 E-value=48 Score=21.30 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=20.3
Q ss_pred CeEEEEEccCCCCCCcceEEEEEEcC
Q 036035 11 PVKDVYLPKNYYTGEPRGFGFVKFRY 36 (190)
Q Consensus 11 ~I~~v~i~~~~~t~~~~G~afV~f~~ 36 (190)
+|++|.|..-...++-++||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788776655578889999999975
No 254
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=32.46 E-value=75 Score=20.33 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=15.9
Q ss_pred cceEEEEEEcCHHHHHHHHH
Q 036035 26 PRGFGFVKFRYAEDAAEAKQ 45 (190)
Q Consensus 26 ~~G~afV~f~~~~~a~~Ai~ 45 (190)
......|+|.+.+.|..+..
T Consensus 52 ~~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 52 HKAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp CSEEEEEEESSHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHC
Confidence 45678999999888887764
No 255
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=32.01 E-value=63 Score=28.12 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=30.9
Q ss_pred CHHHHhh----cCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhC
Q 036035 1 ELRVAFE----RYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLN 48 (190)
Q Consensus 1 DL~~~F~----~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~ 48 (190)
||..+|- .+|-|+.+.|..-+.. .....+++.|.+.++|.+|+..+.
T Consensus 289 dl~~~~~GseGtlGIIT~~tlrl~p~p-~~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 289 NYKHIILGSEGTLGIITEAVMKVHAVP-QAVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp CTHHHHTTCTTSSCEEEEEEEECEECC-SEEEEEEEEESSHHHHHHHHHHHH
T ss_pred chhhhhccCCCCcEEEEEEEEEEEecc-cceEEEEEEcCCHHHHHHHHHHHH
Confidence 3444543 4678888877655422 223577889999888888877553
No 256
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=31.88 E-value=11 Score=28.71 Aligned_cols=60 Identities=10% Similarity=0.024 Sum_probs=34.9
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEc---CHHHHHH---HHHHhCCCee---CCeEEEEEEcc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFR---YAEDAAE---AKQRLNHSLI---GGREIKIVFAE 63 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~---~~~~a~~---Ai~~l~g~~l---~g~~i~V~~a~ 63 (190)
||.++|..++.+..+.|+.++.- +|..-+.|. +.+++.. .+..++|..+ .|..|.|..+.
T Consensus 17 ~i~~vl~~la~~~g~n~vvd~~V---~G~vtl~~~~~v~~~~~~~~l~~vL~~~gl~~~~~~g~v~~V~p~~ 85 (241)
T 3ezj_A 17 DLKSFIETVGANLNKTIIMGPGV---QGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSS 85 (241)
T ss_dssp EHHHHHHHHHHHHTCEEEC---C---CCEEEEEESSCBCHHHHHHHHHHHHHHTTEEEEEETTTEEEEEEC-
T ss_pred CHHHHHHHHHHHhCCeEEECCCC---cceEEEEeCCCCCHHHHHHHHHHHHHHCCcEEEEcCCCEEEEEEhH
Confidence 47778888887777777666421 344334443 3444443 3456888754 58888887654
No 257
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=31.11 E-value=74 Score=21.19 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=19.9
Q ss_pred cceEEEEEEcCHH-----HHHHHHHHhCCC
Q 036035 26 PRGFGFVKFRYAE-----DAAEAKQRLNHS 50 (190)
Q Consensus 26 ~~G~afV~f~~~~-----~a~~Ai~~l~g~ 50 (190)
-.||.||++...+ ++...|....|.
T Consensus 61 fPGYVFV~~~~~~~~~~~~~~~~vr~t~gV 90 (119)
T 1nz8_A 61 FPGYLFIQMDLGDEEEPNEAWEVVRGTPGI 90 (119)
T ss_dssp STTEEEEEECCCSSSSCCHHHHHHHHSTTC
T ss_pred CCCEEEEEeeccccccchhHHHHHHcCCCc
Confidence 4799999998766 677788877764
No 258
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.98 E-value=64 Score=20.64 Aligned_cols=13 Identities=31% Similarity=0.480 Sum_probs=6.3
Q ss_pred EEEEEcCHHHHHH
Q 036035 30 GFVKFRYAEDAAE 42 (190)
Q Consensus 30 afV~f~~~~~a~~ 42 (190)
|||.+..-.+|.+
T Consensus 66 A~V~L~~~~~a~d 78 (86)
T 3j21_T 66 AYVKLKPEYSASE 78 (86)
T ss_dssp EEEEECTTSCHHH
T ss_pred EEEEcCCCCcHHH
Confidence 5555554444443
No 259
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics, joint center for structural genomics, JCSG; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=30.29 E-value=7.3 Score=32.49 Aligned_cols=44 Identities=11% Similarity=-0.034 Sum_probs=28.7
Q ss_pred HHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCC
Q 036035 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNH 49 (190)
Q Consensus 2 L~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g 49 (190)
|.+++++.|.|....|..-. +.|.+||.+..+++|++++..|..
T Consensus 318 iF~~l~~~G~v~~~EM~rtF----NmGiGmVlvV~~e~a~~vl~~L~~ 361 (394)
T 3kiz_A 318 LFQLIQGQSNTPWEEMYKVF----NMGHRLEIYTDAAHAEGMIAIAKK 361 (394)
T ss_dssp HHHHHHHHHTCCHHHHHHHS----CTTEEEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHhc----CCcccEEEEECHHHHHHHHHHHHH
Confidence 34445555555543333211 368899999999999999988753
No 260
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=29.99 E-value=21 Score=31.60 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=22.9
Q ss_pred cceEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Q 036035 26 PRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAE 63 (190)
Q Consensus 26 ~~G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 63 (190)
.+|||||...+.+|.--.-..|++ .++|-.|.|.+..
T Consensus 30 ~~GfgF~~~d~~~difi~~~~~~~-a~~GD~V~v~i~~ 66 (644)
T 2id0_A 30 EKGFGFLEVDAQKSYFIPPPQMKK-VMHGDRIIAVIHS 66 (644)
T ss_dssp SSSCEEEECSSSCEEEECHHHHTT-SCTTCEEEEEEEC
T ss_pred cCCcEEEEECCCCCEEECHHHHhc-CCCCCEEEEEEec
Confidence 489999998654443333345665 3566676666653
No 261
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=29.58 E-value=26 Score=21.71 Aligned_cols=10 Identities=50% Similarity=1.022 Sum_probs=8.0
Q ss_pred ceEEEEEEcC
Q 036035 27 RGFGFVKFRY 36 (190)
Q Consensus 27 ~G~afV~f~~ 36 (190)
+|||||+-.+
T Consensus 14 KGfGFI~~~d 23 (74)
T 2k5n_A 14 KGFGFIKDEN 23 (74)
T ss_dssp TTEEEEEESS
T ss_pred CCeEEEecCC
Confidence 7899998654
No 262
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=28.95 E-value=74 Score=22.61 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=13.3
Q ss_pred EccCCCCCCcceEEEEEEcCHHHHH
Q 036035 17 LPKNYYTGEPRGFGFVKFRYAEDAA 41 (190)
Q Consensus 17 i~~~~~t~~~~G~afV~f~~~~~a~ 41 (190)
|......|.+.|||+| |.+.+.|.
T Consensus 58 ~rT~fGggkStGfa~I-YDs~e~aK 81 (149)
T 2xzm_P 58 FSTQYGGGKSTGFALV-YDNQQYLL 81 (149)
T ss_dssp ECCCSSSSEEEEEEEE-ESCHHHHH
T ss_pred eEecCCCceEEEEEEE-eCCHHHHH
Confidence 4444445667777777 45444443
No 263
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=28.69 E-value=70 Score=21.06 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=20.8
Q ss_pred CHHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcC
Q 036035 1 ELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRY 36 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~ 36 (190)
+|.+.+...| |.+..|..+..+ ..=|+++++.+
T Consensus 28 Ev~~~L~~aG-i~~ysIfl~~~~--~~LF~~~E~~d 60 (104)
T 1x8d_A 28 ELEAVLKSHG-AHNYAIYLDKAR--NLLFAMVEIES 60 (104)
T ss_dssp HHHHHHHHTT-EEEEEEEEETTT--TEEEEEEEESC
T ss_pred HHHHHHHHcC-CeEEEEEEECCC--CeEEEEEEEcC
Confidence 3667777888 555556555322 12488888877
No 264
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=28.34 E-value=1.1e+02 Score=20.41 Aligned_cols=43 Identities=23% Similarity=0.390 Sum_probs=30.6
Q ss_pred HHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHH-HHhC
Q 036035 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAK-QRLN 48 (190)
Q Consensus 2 L~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai-~~l~ 48 (190)
+.+.+..+.+|..|..+ +|...-++.|.+.+.++.+..+ ..|.
T Consensus 80 ~~~~l~~~~~v~~~~~~----~G~~d~~~~v~~~d~~~l~~~~~~~l~ 123 (141)
T 1i1g_A 80 VAEKLKEYDFVKELYLS----SGDHMIMAVIWAKDGEDLAEIISNKIG 123 (141)
T ss_dssp HHHHHHHSTTEEEECCC----SSSSSEEEEEEESSHHHHHHHHHHTTT
T ss_pred HHHHHhcCCCeEEEEEe----cCCCCEEEEEEECCHHHHHHHHHHHhh
Confidence 44567778889888654 4444557778888988888887 5444
No 265
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=28.09 E-value=26 Score=24.91 Aligned_cols=10 Identities=30% Similarity=0.627 Sum_probs=8.5
Q ss_pred ceEEEEEEcC
Q 036035 27 RGFGFVKFRY 36 (190)
Q Consensus 27 ~G~afV~f~~ 36 (190)
+|||||+-.+
T Consensus 74 KGfGFI~~dd 83 (147)
T 3aqq_A 74 KGHGFITPAD 83 (147)
T ss_dssp TTEEEEEESS
T ss_pred CCeEEeccCC
Confidence 8999998765
No 266
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=27.97 E-value=24 Score=21.35 Aligned_cols=10 Identities=40% Similarity=0.876 Sum_probs=8.2
Q ss_pred ceEEEEEEcC
Q 036035 27 RGFGFVKFRY 36 (190)
Q Consensus 27 ~G~afV~f~~ 36 (190)
+||+||+-.+
T Consensus 13 kGfGFI~~~~ 22 (67)
T 3cam_A 13 KGFGFITPDE 22 (67)
T ss_dssp TTEEEEEETT
T ss_pred CCeEEEecCC
Confidence 7999998764
No 267
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=27.97 E-value=40 Score=22.18 Aligned_cols=10 Identities=20% Similarity=0.351 Sum_probs=6.1
Q ss_pred CCCcceEEEE
Q 036035 23 TGEPRGFGFV 32 (190)
Q Consensus 23 t~~~~G~afV 32 (190)
.|++.|||+|
T Consensus 62 ~gks~G~a~I 71 (98)
T 2g1d_A 62 KHEIEGYTKI 71 (98)
T ss_dssp SSEEEEEEEE
T ss_pred CceEEEEEEE
Confidence 4556667766
No 268
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=27.77 E-value=24 Score=21.72 Aligned_cols=38 Identities=16% Similarity=0.279 Sum_probs=18.6
Q ss_pred ceEEEEEEcCHHHHHHHHHHhC--C-Cee-CCeEEEEEEccc
Q 036035 27 RGFGFVKFRYAEDAAEAKQRLN--H-SLI-GGREIKIVFAEE 64 (190)
Q Consensus 27 ~G~afV~f~~~~~a~~Ai~~l~--g-~~l-~g~~i~V~~a~~ 64 (190)
+||+||+-.+-+|+--=+..|. | ..| .|..|..++...
T Consensus 13 kGfGFI~~~~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~ 54 (73)
T 3a0j_A 13 KGYGFIEREGDTDVFVHYTAINAKGFRTLNEGDIVTFDVEPG 54 (73)
T ss_dssp TTEEEEECTTSCCEEEEGGGBCSSSCSSCCTTCEEEEEEECC
T ss_pred CCEEEEecCCCCcEEEEhhhccccCCCCCCCCCEEEEEEEEC
Confidence 7999998654322211112222 2 122 366766665543
No 269
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=27.62 E-value=24 Score=21.15 Aligned_cols=10 Identities=30% Similarity=0.959 Sum_probs=8.1
Q ss_pred ceEEEEEEcC
Q 036035 27 RGFGFVKFRY 36 (190)
Q Consensus 27 ~G~afV~f~~ 36 (190)
+||+||+-.+
T Consensus 13 kGfGFI~~~~ 22 (66)
T 1c9o_A 13 KGYGFIEVEG 22 (66)
T ss_dssp TTEEEEEETT
T ss_pred CCeEEEecCC
Confidence 7999998654
No 270
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=26.92 E-value=1.1e+02 Score=18.40 Aligned_cols=44 Identities=7% Similarity=0.138 Sum_probs=24.4
Q ss_pred HHHHhhcCC-CeEEEEEccCCCCCCcceEEE--EEEcCHHHHHHHHHHhCC
Q 036035 2 LRVAFERYG-PVKDVYLPKNYYTGEPRGFGF--VKFRYAEDAAEAKQRLNH 49 (190)
Q Consensus 2 L~~~F~~~G-~I~~v~i~~~~~t~~~~G~af--V~f~~~~~a~~Ai~~l~g 49 (190)
|..+|.+.| .|..+.+.... + ..... |+..+.+..+.++..|..
T Consensus 22 I~~~la~~~inI~~i~~~~~~--~--~~~~~i~v~~~~~~~l~~l~~~L~~ 68 (88)
T 2ko1_A 22 ITGVISKFDTNIRTIVLNAKD--G--IFTCNLMIFVKNTDKLTTLMDKLRK 68 (88)
T ss_dssp HHHHHTTSSSCEEEEEEEECS--S--EEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCeEEEEEEEcC--C--EEEEEEEEEECCHHHHHHHHHHHhc
Confidence 566777776 67676654331 1 11122 334456677777777754
No 271
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=26.81 E-value=69 Score=21.13 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=19.9
Q ss_pred CeEEEEEccCCCCCCcceEEEEEEcC
Q 036035 11 PVKDVYLPKNYYTGEPRGFGFVKFRY 36 (190)
Q Consensus 11 ~I~~v~i~~~~~t~~~~G~afV~f~~ 36 (190)
+|++|.|..-...|+-++||=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788776555568889999999975
No 272
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=26.48 E-value=72 Score=21.26 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=19.7
Q ss_pred CeEEEEEccCCCCCCcceEEEEEEcC
Q 036035 11 PVKDVYLPKNYYTGEPRGFGFVKFRY 36 (190)
Q Consensus 11 ~I~~v~i~~~~~t~~~~G~afV~f~~ 36 (190)
+|++|.|..-...|+-++||=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 57777776555568889999999975
No 273
>3mdo_A Putative phosphoribosylformylglycinamidine cyclo-; structural genomics, joint center for structural genomics; HET: MSE PGE P6G PG4; 1.91A {Parabacteroides distasonis}
Probab=26.19 E-value=8.5 Score=32.01 Aligned_cols=43 Identities=12% Similarity=-0.018 Sum_probs=27.5
Q ss_pred HHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCC
Q 036035 3 RVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNH 49 (190)
Q Consensus 3 ~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g 49 (190)
..++++.|.|....|..-. +.|.+||.+..+++|++++..|..
T Consensus 317 F~~l~~~G~v~~~EM~rtF----NmGiGmVlvV~~e~a~~vl~~l~~ 359 (389)
T 3mdo_A 317 FRTIQEQSGTDWSEMYKVF----NMGHRMEIYIAPEHAEEVIGISKS 359 (389)
T ss_dssp HHHHHHHHCCCHHHHHHHS----CTTEEEEEEECGGGHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHhc----cCcceEEEEECHHHHHHHHHHHHH
Confidence 3444555555433332211 368899999999999999887753
No 274
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=25.96 E-value=94 Score=21.68 Aligned_cols=24 Identities=25% Similarity=0.584 Sum_probs=13.4
Q ss_pred EccCCCCCCcceEEEEEEcCHHHHH
Q 036035 17 LPKNYYTGEPRGFGFVKFRYAEDAA 41 (190)
Q Consensus 17 i~~~~~t~~~~G~afV~f~~~~~a~ 41 (190)
|......|++.|||.| |.+.+.|.
T Consensus 60 ~rT~fG~gkstGfa~I-Yds~d~ak 83 (135)
T 3u5c_Y 60 FRTQFGGGKSVGFGLV-YNSVAEAK 83 (135)
T ss_dssp EEECTTSSEEEEEEEE-ESSHHHHH
T ss_pred eEeccCCceEEEEEEE-eCCHHHHH
Confidence 4444445667777776 55544443
No 275
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=25.85 E-value=21 Score=16.96 Aligned_cols=9 Identities=22% Similarity=0.859 Sum_probs=7.1
Q ss_pred HHHHhhcCC
Q 036035 2 LRVAFERYG 10 (190)
Q Consensus 2 L~~~F~~~G 10 (190)
++.+|.+||
T Consensus 17 vkklfkkwg 25 (26)
T 1ytr_A 17 VKKLFKKWG 25 (26)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHHcC
Confidence 577888887
No 276
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=25.33 E-value=28 Score=20.87 Aligned_cols=10 Identities=30% Similarity=0.830 Sum_probs=8.4
Q ss_pred ceEEEEEEcC
Q 036035 27 RGFGFVKFRY 36 (190)
Q Consensus 27 ~G~afV~f~~ 36 (190)
+||+||+-.+
T Consensus 12 kGfGFI~~~~ 21 (66)
T 1g6p_A 12 KGYGFITKDE 21 (66)
T ss_dssp TTEEEEEETT
T ss_pred CCEEEEecCC
Confidence 8999998764
No 277
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=25.32 E-value=41 Score=19.92 Aligned_cols=11 Identities=27% Similarity=0.401 Sum_probs=8.4
Q ss_pred ceEEEEEEcCH
Q 036035 27 RGFGFVKFRYA 37 (190)
Q Consensus 27 ~G~afV~f~~~ 37 (190)
.+.|+|.|++.
T Consensus 31 ~~~clV~F~D~ 41 (58)
T 4hcz_A 31 REVCLVQFEDD 41 (58)
T ss_dssp TTEEEEEETTS
T ss_pred CCEEEEEEcCC
Confidence 45899999863
No 278
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=24.74 E-value=1.9e+02 Score=20.44 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=30.2
Q ss_pred HHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHh
Q 036035 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRL 47 (190)
Q Consensus 2 L~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l 47 (190)
+.+.+..+-+|..|..+ +|...=++.|.+.+.++.+..+..|
T Consensus 103 v~~~l~~~peV~~~~~v----tG~~d~l~~v~~~d~~~l~~~l~~l 144 (171)
T 2e1c_A 103 VASNLAKYPEIVEVYET----TGDYDMVVKIRTKNSEELNNFLDLI 144 (171)
T ss_dssp HHHHHHTSTTEEEEEEC----SSSSSEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHhcCcCeEEEEEe----eCCCCEEEEEEECCHHHHHHHHHHH
Confidence 45566778889888776 3444557778889988888776544
No 279
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=24.74 E-value=1.4e+02 Score=19.12 Aligned_cols=42 Identities=17% Similarity=0.084 Sum_probs=27.3
Q ss_pred HHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhCCC
Q 036035 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHS 50 (190)
Q Consensus 2 L~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~g~ 50 (190)
|+.+-..+|. ..|.|..+ .|..+|.=.+.+.+++|+..++..
T Consensus 37 Ik~I~e~tGv-~~IdI~ed------dG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 37 IQQARKVPGV-TAIELDED------TGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp HHHHHTSTTE-EEEEEETT------TTEEEEEESSHHHHHHHHHHHSCC
T ss_pred HHHHHHHhCC-eEEEEEcC------CCEEEEEECCHHHHHHHHHHHHhh
Confidence 3444555663 22555432 367788767999999999988764
No 280
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=24.54 E-value=45 Score=21.48 Aligned_cols=8 Identities=50% Similarity=1.157 Sum_probs=6.7
Q ss_pred cceEEEEE
Q 036035 26 PRGFGFVK 33 (190)
Q Consensus 26 ~~G~afV~ 33 (190)
.+||+||+
T Consensus 19 ~KGfGFI~ 26 (90)
T 3ulj_A 19 RMGFGFIS 26 (90)
T ss_dssp TTTEEEEE
T ss_pred CCCeEEeE
Confidence 38999996
No 281
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=24.43 E-value=1.7e+02 Score=19.74 Aligned_cols=25 Identities=4% Similarity=-0.031 Sum_probs=17.1
Q ss_pred ceEEEEEEcCHHHHHHHHHHhCCCee
Q 036035 27 RGFGFVKFRYAEDAAEAKQRLNHSLI 52 (190)
Q Consensus 27 ~G~afV~f~~~~~a~~Ai~~l~g~~l 52 (190)
+..+.|.+.+.+.|..+|.. .|.++
T Consensus 111 ~~~~~i~~~d~~~A~~~L~~-~g~~v 135 (144)
T 2f06_A 111 VANVVIRPSNMDKCIEVLKE-KKVDL 135 (144)
T ss_dssp EEEEEEEESCHHHHHHHHHH-TTCEE
T ss_pred cEEEEEEeCCHHHHHHHHHH-cCCEE
Confidence 56777788877777777764 55543
No 282
>2y3m_A Emhofq, protein transport protein HOFQ; secretin, DNA uptake, competence; 2.30A {Aggregatibacter actinomycetemcomitans}
Probab=24.37 E-value=77 Score=22.45 Aligned_cols=61 Identities=5% Similarity=-0.063 Sum_probs=36.2
Q ss_pred CHHHHhhcCCCeEEEEEccCCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCee--CCeEEEEEEcc
Q 036035 1 ELRVAFERYGPVKDVYLPKNYY-TGEPRGFGFVKFRYAEDAAEAKQRLNHSLI--GGREIKIVFAE 63 (190)
Q Consensus 1 DL~~~F~~~G~I~~v~i~~~~~-t~~~~G~afV~f~~~~~a~~Ai~~l~g~~l--~g~~i~V~~a~ 63 (190)
||.++|..++++..+.|+.++. .|.- -..+.-....+|...+..++|..+ .|..|.|..+.
T Consensus 16 ~i~~vl~~la~~~g~nivi~~~V~G~v--Tl~l~~v~~~~~l~~vl~~~gl~~~~~g~vl~V~~~~ 79 (175)
T 2y3m_A 16 PLVPTLQQLALAHNTNLIIDDELQGTV--SLQLENVDLDQLFRSVAKIKQLDLWQENGIYYFTKGD 79 (175)
T ss_dssp CHHHHHHHSCCCTTCEEEEC-----CC--EEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEEC--
T ss_pred CHHHHHHHHHHHhCCCEEeCCCCceEE--EEEEcCCCHHHHHHHHHHHCCceEEEECCEEEEEchH
Confidence 5788888888888776666542 3331 122333456677777777788643 57777776544
No 283
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=24.30 E-value=1e+02 Score=25.08 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=25.6
Q ss_pred HHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHH
Q 036035 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQ 45 (190)
Q Consensus 2 L~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~ 45 (190)
|.++..+||.|..+.|.. .-+|.+.+.+.++..+.
T Consensus 38 ~~~l~~kYG~i~~~~~g~---------~~~vvv~dp~~~~~il~ 72 (487)
T 3n9y_A 38 HVQNFQKYGPIYREKLGN---------VESVYVIDPEDVALLFK 72 (487)
T ss_dssp HHHHHHHHCSEEEEEETT---------EEEEEECCHHHHHHHHH
T ss_pred HHHHHHHcCceeeccCCC---------CCEEEEcCHHHHHHHHH
Confidence 456678899999887632 34677888888887765
No 284
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=24.26 E-value=1.3e+02 Score=19.68 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=22.4
Q ss_pred eEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEEccc
Q 036035 28 GFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEE 64 (190)
Q Consensus 28 G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~ 64 (190)
....|...+.+.|++||.... .|..+.|-|-+.+.
T Consensus 52 tivvvvvddkewaekairfvk--slgaqvliiiydqd 86 (134)
T 2l69_A 52 TIVVVVVDDKEWAEKAIRFVK--SLGAQVLIIIYDQD 86 (134)
T ss_dssp EEEEEECSSHHHHHHHHHHHH--HHCCCCEEEEECSC
T ss_pred eEEEEEEccHHHHHHHHHHHH--hcCCeEEEEEEeCc
Confidence 355666678899999998542 34555555555543
No 285
>3fhk_A UPF0403 protein YPHP; disulfide isomerase, thioredoxin superfamily, CXC motif, structural genomics, surface entropy reduction, Ser, PSI-2; 2.30A {Bacillus subtilis}
Probab=23.88 E-value=29 Score=24.53 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=15.5
Q ss_pred EEEEEEcCHHHHHHHHHHhCCC
Q 036035 29 FGFVKFRYAEDAAEAKQRLNHS 50 (190)
Q Consensus 29 ~afV~f~~~~~a~~Ai~~l~g~ 50 (190)
.||-++.+.++++.|+....|+
T Consensus 26 ~Gf~eL~T~e~Vd~a~~~~~GT 47 (147)
T 3fhk_A 26 AGFEELTTAEEVENFMEKAEGT 47 (147)
T ss_dssp TTCEECCSHHHHHHHHHHCCSE
T ss_pred hCccccCCHHHHHHHHhcCCCc
Confidence 4677888888888887753443
No 286
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural genomics, PSI-biology, protein structure initiative; NMR {Thermotoga maritima}
Probab=23.36 E-value=1.4e+02 Score=19.60 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=19.4
Q ss_pred CCCeEEEEEccCCCCCCcceEEEEEEc-CHHHHHHHHHHhCC
Q 036035 9 YGPVKDVYLPKNYYTGEPRGFGFVKFR-YAEDAAEAKQRLNH 49 (190)
Q Consensus 9 ~G~I~~v~i~~~~~t~~~~G~afV~f~-~~~~a~~Ai~~l~g 49 (190)
+-.|+.|.|-.|- ....+||.+. +.++.+.+++.|+.
T Consensus 35 ~vtVt~V~vs~Dl----~~AkVyvs~~g~~~~~~~~~~~L~~ 72 (106)
T 2kzf_A 35 FVTFSRVELSKDK----RYADVYVSFLGTPEERKETVEILNR 72 (106)
T ss_dssp GCCEEEEEECTTS----CEEEEEECCSSCHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCC----CEEEEEEEeCCChhhHHHHHHHHHH
Confidence 3467788887662 2233444443 24455555555543
No 287
>3bam_A R. bamhi, protein (restriction endonuclease bamhi); hydrolase, phosphodiesterase, complex (endonuclease/DNA), protein/DNA; HET: DNA; 1.80A {Bacillus amyloliquefaciens} SCOP: c.52.1.3 PDB: 1bhm_A* 1bam_A* 2bam_A* 1esg_A*
Probab=23.06 E-value=85 Score=23.23 Aligned_cols=43 Identities=19% Similarity=0.167 Sum_probs=26.8
Q ss_pred cCCCeEEEEEc-cCCCCCCcceEEE-EEEcC--HHHHHHHHHHhCCCeeCCe
Q 036035 8 RYGPVKDVYLP-KNYYTGEPRGFGF-VKFRY--AEDAAEAKQRLNHSLIGGR 55 (190)
Q Consensus 8 ~~G~I~~v~i~-~~~~t~~~~G~af-V~f~~--~~~a~~Ai~~l~g~~l~g~ 55 (190)
+-|+|.-+.++ .+ +.++.| |||++ ...+..||.+|....+.|.
T Consensus 89 kPGPIDA~k~i~~~-----~~~~~~~~EwETGNIsSShRAiNKm~lg~~~g~ 135 (213)
T 3bam_A 89 KGGPIDVYKEFIEN-----SELKRVGMEFETGNISSAHRSMNKLLLGLKHGE 135 (213)
T ss_dssp CCCCEEEEEEEEET-----TEEEEEEEEECCSBHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCceEEEEcccc-----cCCceEEEEEecCccchHHHHHHHHHHHhhhce
Confidence 45666655544 32 235555 78874 7788999988766544443
No 288
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=28.75 E-value=18 Score=24.24 Aligned_cols=20 Identities=20% Similarity=0.125 Sum_probs=15.7
Q ss_pred EEEEcCHHHHHHHHHHhCCC
Q 036035 31 FVKFRYAEDAAEAKQRLNHS 50 (190)
Q Consensus 31 fV~f~~~~~a~~Ai~~l~g~ 50 (190)
+-.|.+.++|..|+..|...
T Consensus 68 yG~Y~s~~~A~~A~~~LP~~ 87 (106)
T 2lfv_A 68 SGVYASKEEAKKAVSTLPAD 87 (106)
Confidence 34678889999999988754
No 289
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=22.86 E-value=1.8e+02 Score=22.68 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=28.3
Q ss_pred HHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHh
Q 036035 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRL 47 (190)
Q Consensus 2 L~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l 47 (190)
|++.|+++|--.-..+ .|..-|+-||-|...+.|+..++.|
T Consensus 47 ~~~~~~~~~~~~~~~~-----~ga~gg~~~~~~~~~~~a~~~~~~l 87 (291)
T 1o57_A 47 IKQTFEQQGIGTLLTV-----PGAAGGVKYIPKMKQAEAEEFVQTL 87 (291)
T ss_dssp HHHHHHHTTSEEEEEE-----CSTTCEEEEEECCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEe-----cCCCCceEEcccCCHHHHHHHHHHH
Confidence 4567888875433222 4556788899988888888777654
No 290
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=22.51 E-value=1.2e+02 Score=24.64 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=24.3
Q ss_pred HHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHH
Q 036035 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQ 45 (190)
Q Consensus 2 L~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~ 45 (190)
|.++..+||.|..+.+. |.-+|...+.+.++.++.
T Consensus 37 ~~~~~~kYG~i~~~~~~---------~~~~vvv~~~~~i~~il~ 71 (461)
T 3ld6_A 37 LENAYEKYGPVFSFTMV---------GKTFTYLLGSDAAALLFN 71 (461)
T ss_dssp HHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEEC---------CccEEEEeCHHHHHHHHh
Confidence 45677889999888764 244666677777666654
No 291
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=22.36 E-value=1.9e+02 Score=19.63 Aligned_cols=43 Identities=14% Similarity=0.238 Sum_probs=30.9
Q ss_pred HHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHHhC
Q 036035 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLN 48 (190)
Q Consensus 2 L~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~~l~ 48 (190)
+.+.+..+-+|..|..+ +|...=++.|.+.+.++.+..+..|.
T Consensus 83 ~~~~l~~~p~V~~~~~~----tG~~d~~~~v~~~d~~~l~~~~~~l~ 125 (151)
T 2cyy_A 83 VASNLAKYPEIVEVYET----TGDYDMVVKIRTKNSEELNNFLDLIG 125 (151)
T ss_dssp HHHHHHTCTTEEEEEEC----SSSSSEEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHhcCCCeeEeeEe----cCCCCEEEEEEECCHHHHHHHHHHHh
Confidence 45567778889988776 34445577788899888888776554
No 292
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=21.88 E-value=86 Score=21.97 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=18.7
Q ss_pred ceEEEEEEcCHHHHHHHHHHhCCC
Q 036035 27 RGFGFVKFRYAEDAAEAKQRLNHS 50 (190)
Q Consensus 27 ~G~afV~f~~~~~a~~Ai~~l~g~ 50 (190)
.||.||++...+++...|....|.
T Consensus 52 pgYvFV~~~~~~~~~~~v~~~~gv 75 (162)
T 2oug_A 52 PNYLFVEFDPEVIHTTTINATRGV 75 (162)
T ss_dssp TTEEEEEECTTTSCHHHHHHSTTE
T ss_pred CCEEEEEEEcccCceEEEEeCCCc
Confidence 689999998766667777777663
No 293
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=20.70 E-value=1.3e+02 Score=24.18 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=26.1
Q ss_pred HHHHhhcCCCeEEEEEccCCCCCCcceEEEEEEcCHHHHHHHHH
Q 036035 2 LRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQ 45 (190)
Q Consensus 2 L~~~F~~~G~I~~v~i~~~~~t~~~~G~afV~f~~~~~a~~Ai~ 45 (190)
+.+++.+||.|..+.+. +.-+|.+.+.+.++.++.
T Consensus 36 ~~~~~~~yG~v~~~~~g---------~~~~vvv~~~~~v~~il~ 70 (476)
T 3e6i_A 36 FTRLAQRFGPVFTLYVG---------SQRMVVMHGYKAVKEALL 70 (476)
T ss_dssp HHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHh
Confidence 45667889999887663 245777888888888876
No 294
>1jos_A RBFA, ribosome-binding factor A; RNA binding protein, structure 2 function project, S2F, structural genomics; 1.70A {Haemophilus influenzae} SCOP: d.52.7.1 PDB: 1kkg_A
Probab=20.31 E-value=1.5e+02 Score=20.16 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=18.5
Q ss_pred CeEEEEEccCCCCCCcceEEEEEEcC---HHHHHHHHHHhCC
Q 036035 11 PVKDVYLPKNYYTGEPRGFGFVKFRY---AEDAAEAKQRLNH 49 (190)
Q Consensus 11 ~I~~v~i~~~~~t~~~~G~afV~f~~---~~~a~~Ai~~l~g 49 (190)
.|+.|.|-.|- ....+||.+.. .++.+.++..|+.
T Consensus 36 tVt~V~vS~Dl----~~AkVyvs~~g~~~~~~~~~~~~~L~~ 73 (128)
T 1jos_A 36 TVSDVEVSSDL----SYAKIFVTFLFDHDEMAIEQGMKGLEK 73 (128)
T ss_dssp EEEEEEECTTS----CEEEEEEEESCCSCHHHHHHHHHHHHH
T ss_pred EEeEEEECCCC----CEEEEEEEeCCCCchhhHHHHHHHHHH
Confidence 45566665552 23455666553 5555556555544
No 295
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=20.11 E-value=1e+02 Score=19.77 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=18.3
Q ss_pred CCcceEEEEEEcC--HHHHHHHHHHhCC
Q 036035 24 GEPRGFGFVKFRY--AEDAAEAKQRLNH 49 (190)
Q Consensus 24 ~~~~G~afV~f~~--~~~a~~Ai~~l~g 49 (190)
+..-|+-+|++.. .+++++|+..|..
T Consensus 60 ~~~~G~L~v~l~G~~~~~~~~ai~~L~~ 87 (98)
T 3ced_A 60 NGTVGFLVLHIPYISSVDFGKFEKELIE 87 (98)
T ss_dssp TEEEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred CEeEEEEEEEEeCCCHHHHHHHHHHHHH
Confidence 4456788888874 5677888887743
Done!