BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036036
(98 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 9 EWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRGSN 68
EWYFF+ ++KY N +R R G+WK TG D+ + + R +G+KK LVFY G+
Sbjct: 70 EWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGR--TLGIKKALVFYAGKAPR 127
Query: 69 AVKTSWVIHEY 79
VKT W++HEY
Sbjct: 128 GVKTDWIMHEY 138
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 3 AIRDDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFY 62
A+ + EWYFFS ++KY N +R R +G+WK TG D+ I + ++ +G+KK LVFY
Sbjct: 69 ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR--VGIKKALVFY 126
Query: 63 EGRGSNAVKTSWVIHEYHSNNAS 85
G+ KT+W++HEY S
Sbjct: 127 IGKAPKGTKTNWIMHEYRLIEPS 149
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 3 AIRDDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFY 62
A+ + EWYFFS ++KY N +R R +G+WK TG D+ I + ++ +G+KK LVFY
Sbjct: 66 ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR--VGIKKALVFY 123
Query: 63 EGRGSNAVKTSWVIHEYHSNNAS 85
G+ KT+W++HEY S
Sbjct: 124 IGKAPKGTKTNWIMHEYRLIEPS 146
>pdb|1DMZ|A Chain A, A Refined Nmr Structure Of A New Phophopeptide-Binding
Domain Containing The Fha2 Of Rad53
pdb|1FHQ|A Chain A, Refined Solution Structure Of The Fha2 Domain Of Rad53
pdb|1FHR|A Chain A, Solution Structure Of The Fha2 Domain Of Rad53 Complexed
With A Phosphotyrosyl Peptide
pdb|1J4K|A Chain A, Solution Structure Of The Fha2 Domain Of Rad53 Complexed
With A Phosphotyrosyl Peptide Derived From Rad9
pdb|1J4L|A Chain A, Solution Structure Of The Fha2 Domain Of Rad53 Complexed
With A Phosphothreonyl Peptide Derived From Rad9
pdb|1K2M|A Chain A, Solution Structure Of The Fha2 Domain Of Rad53 Complexed
With A Phosphotyrosyl Peptide Derived From Rad9
pdb|1K2N|A Chain A, Solution Structure Of The Fha2 Domain Of Rad53 Complexed
With A Phosphothreonyl Peptide Derived From Rad9
Length = 158
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 7 DDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKD--RQIWDKNRKEVIGVKKNL----- 59
DD WY + N Y N+ R + T+ + + D + IWDKN K VIG K +
Sbjct: 73 DDIWYCHTGTNVSYLNNNRMIQGTK---FLLQDGDEIKIIWDKNNKFVIGFKVEINDTTG 129
Query: 60 VFYEGRG 66
+F EG G
Sbjct: 130 LFNEGLG 136
>pdb|1QU5|A Chain A, Nmr Structure Of A New Phosphotyrosine Binding Domain
Containing The Fha2 Domain Of Rad 53
Length = 182
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 7 DDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKD--RQIWDKNRKEVIGVKKNL----- 59
DD WY + N Y N+ R + T+ + + D + IWDKN K VIG K +
Sbjct: 97 DDIWYCHTGTNVSYLNNNRMIQGTK---FLLQDGDEIKIIWDKNNKFVIGFKVEINDTTG 153
Query: 60 VFYEGRG 66
+F EG G
Sbjct: 154 LFNEGLG 160
>pdb|1HA0|A Chain A, Hemagglutinin Precursor Ha0
Length = 494
Score = 28.5 bits (62), Expect = 0.99, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 8 DEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGR 65
D WY F N + A ++T+A ++ GK ++ +K ++ ++K EGR
Sbjct: 340 DGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGR 397
>pdb|2BIB|A Chain A, Crystal Structure Of The Complete Modular Teichioic Acid
Phosphorylcholine Esterase Pce (Cbpe) From Streptococcus
Pneumoniae
Length = 547
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 4 IRDDDEWYFFSEHNKKYANSARTERTT--RAGHWKV 37
I+D D+WYF E+ + N E T +G W V
Sbjct: 499 IKDKDKWYFLKENGQLLVNGKTPEGYTVDSSGAWLV 534
>pdb|4GMS|B Chain B, Crystal Structure Of Heterosubtypic Fab S1391 IN COMPLEX
WITH Influenza A H3 Hemagglutinin
pdb|4GMS|D Chain D, Crystal Structure Of Heterosubtypic Fab S1391 IN COMPLEX
WITH Influenza A H3 Hemagglutinin
pdb|4GMS|F Chain F, Crystal Structure Of Heterosubtypic Fab S1391 IN COMPLEX
WITH Influenza A H3 Hemagglutinin
Length = 176
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 8 DEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGR 65
D WY F N + A ++T+A ++ GK ++ +K ++ ++K EGR
Sbjct: 19 DGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGR 76
>pdb|3EYM|B Chain B, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
pdb|3EYM|D Chain D, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
pdb|3EYM|F Chain F, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
Length = 172
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 8 DEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGR 65
D WY F N + A ++T+A ++ GK ++ +K ++ ++K EGR
Sbjct: 19 DGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGR 76
>pdb|4FQY|B Chain B, Crystal Structure Of Broadly Neutralizing Antibody
Cr9114 Bound To H3 Influenza Hemagglutinin
pdb|4FNK|B Chain B, Crystal Structure Of The AHONG KONG11968 (H3N2)
INFLUENZA VIRUS Hemagglutinin
pdb|4FNK|D Chain D, Crystal Structure Of The AHONG KONG11968 (H3N2)
INFLUENZA VIRUS Hemagglutinin
pdb|4FNK|F Chain F, Crystal Structure Of The AHONG KONG11968 (H3N2)
INFLUENZA VIRUS Hemagglutinin
pdb|4FQR|B Chain B, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|D Chain D, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|F Chain F, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|H Chain H, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|J Chain J, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|L Chain L, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|N Chain N, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|P Chain P, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|R Chain R, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|T Chain T, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|V Chain V, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|X Chain X, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
Length = 174
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 8 DEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGR 65
D WY F N + A ++T+A ++ GK ++ +K ++ ++K EGR
Sbjct: 19 DGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGR 76
>pdb|3SDY|B Chain B, Crystal Structure Of Broadly Neutralizing Antibody
Cr8020 Bound To The Influenza A H3 Hemagglutinin
Length = 176
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 8 DEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGR 65
D WY F N + A ++T+A ++ GK ++ +K ++ ++K EGR
Sbjct: 19 DGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGR 76
>pdb|2HMG|B Chain B, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|2HMG|D Chain D, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|2HMG|F Chain F, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|3HMG|B Chain B, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|3HMG|D Chain D, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|3HMG|F Chain F, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|4HMG|B Chain B, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|4HMG|D Chain D, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|4HMG|F Chain F, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|2VIU|B Chain B, Influenza Virus Hemagglutinin
pdb|1QFU|B Chain B, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
pdb|1EO8|B Chain B, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
pdb|1KEN|B Chain B, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|D Chain D, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|F Chain F, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1HGG|B Chain B, Binding Of Influenza Virus Hemagglutinin To Analogs Of
Its Cell- Surface Receptor, Sialic Acid: Analysis By
Proton Nuclear Magnetic Resonance Spectroscopy And
X-Ray Crystallography
pdb|1HGG|D Chain D, Binding Of Influenza Virus Hemagglutinin To Analogs Of
Its Cell- Surface Receptor, Sialic Acid: Analysis By
Proton Nuclear Magnetic Resonance Spectroscopy And
X-Ray Crystallography
pdb|1HGG|F Chain F, Binding Of Influenza Virus Hemagglutinin To Analogs Of
Its Cell- Surface Receptor, Sialic Acid: Analysis By
Proton Nuclear Magnetic Resonance Spectroscopy And
X-Ray Crystallography
pdb|3ZTJ|B Chain B, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin.
pdb|3ZTJ|D Chain D, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin.
pdb|3ZTJ|F Chain F, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin.
pdb|1HGF|B Chain B, Binding Of Influenza Virus Hemagglutinin To Analogs Of
Its Cell- Surface Receptor, Sialic Acid: Analysis By
Proton Nuclear Magnetic Resonance Spectroscopy And
X-Ray Crystallography
pdb|1HGF|D Chain D, Binding Of Influenza Virus Hemagglutinin To Analogs Of
Its Cell- Surface Receptor, Sialic Acid: Analysis By
Proton Nuclear Magnetic Resonance Spectroscopy And
X-Ray Crystallography
pdb|1HGF|F Chain F, Binding Of Influenza Virus Hemagglutinin To Analogs Of
Its Cell- Surface Receptor, Sialic Acid: Analysis By
Proton Nuclear Magnetic Resonance Spectroscopy And
X-Ray Crystallography
pdb|1HGH|B Chain B, Binding Of Influenza Virus Hemagglutinin To Analogs Of
Its Cell- Surface Receptor, Sialic Acid: Analysis By
Proton Nuclear Magnetic Resonance Spectroscopy And
X-Ray Crystallography
pdb|1HGH|D Chain D, Binding Of Influenza Virus Hemagglutinin To Analogs Of
Its Cell- Surface Receptor, Sialic Acid: Analysis By
Proton Nuclear Magnetic Resonance Spectroscopy And
X-Ray Crystallography
pdb|1HGH|F Chain F, Binding Of Influenza Virus Hemagglutinin To Analogs Of
Its Cell- Surface Receptor, Sialic Acid: Analysis By
Proton Nuclear Magnetic Resonance Spectroscopy And
X-Ray Crystallography
pdb|1HGE|B Chain B, Binding Of Influenza Virus Hemagglutinin To Analogs Of
Its Cell- Surface Receptor, Sialic Acid: Analysis By
Proton Nuclear Magnetic Resonance Spectroscopy And
X-Ray Crystallography
pdb|1HGE|D Chain D, Binding Of Influenza Virus Hemagglutinin To Analogs Of
Its Cell- Surface Receptor, Sialic Acid: Analysis By
Proton Nuclear Magnetic Resonance Spectroscopy And
X-Ray Crystallography
pdb|1HGE|F Chain F, Binding Of Influenza Virus Hemagglutinin To Analogs Of
Its Cell- Surface Receptor, Sialic Acid: Analysis By
Proton Nuclear Magnetic Resonance Spectroscopy And
X-Ray Crystallography
pdb|1HGJ|B Chain B, Binding Of Influenza Virus Hemagglutinin To Analogs Of
Its Cell- Surface Receptor, Sialic Acid: Analysis By
Proton Nuclear Magnetic Resonance Spectroscopy And
X-Ray Crystallography
pdb|1HGJ|D Chain D, Binding Of Influenza Virus Hemagglutinin To Analogs Of
Its Cell- Surface Receptor, Sialic Acid: Analysis By
Proton Nuclear Magnetic Resonance Spectroscopy And
X-Ray Crystallography
pdb|1HGJ|F Chain F, Binding Of Influenza Virus Hemagglutinin To Analogs Of
Its Cell- Surface Receptor, Sialic Acid: Analysis By
Proton Nuclear Magnetic Resonance Spectroscopy And
X-Ray Crystallography
pdb|1HGD|B Chain B, Binding Of Influenza Virus Hemagglutinin To Analogs Of
Its Cell- Surface Receptor, Sialic Acid: Analysis By
Proton Nuclear Magnetic Resonance Spectroscopy And
X-Ray Crystallography
pdb|1HGD|D Chain D, Binding Of Influenza Virus Hemagglutinin To Analogs Of
Its Cell- Surface Receptor, Sialic Acid: Analysis By
Proton Nuclear Magnetic Resonance Spectroscopy And
X-Ray Crystallography
pdb|1HGD|F Chain F, Binding Of Influenza Virus Hemagglutinin To Analogs Of
Its Cell- Surface Receptor, Sialic Acid: Analysis By
Proton Nuclear Magnetic Resonance Spectroscopy And
X-Ray Crystallography
pdb|2YPG|B Chain B, Haemagglutinin Of 1968 Human H3n2 Virus In Complex With
Human Receptor Analogue Lstc
pdb|2YPG|D Chain D, Haemagglutinin Of 1968 Human H3n2 Virus In Complex With
Human Receptor Analogue Lstc
pdb|2YPG|F Chain F, Haemagglutinin Of 1968 Human H3n2 Virus In Complex With
Human Receptor Analogue Lstc
pdb|1HGI|B Chain B, Binding Of Influenza Virus Hemagglutinin To Analogs Of
Its Cell- Surface Receptor, Sialic Acid: Analysis By
Proton Nuclear Magnetic Resonance Spectroscopy And
X-ray Crystallography
pdb|1HGI|D Chain D, Binding Of Influenza Virus Hemagglutinin To Analogs Of
Its Cell- Surface Receptor, Sialic Acid: Analysis By
Proton Nuclear Magnetic Resonance Spectroscopy And
X-ray Crystallography
pdb|1HGI|F Chain F, Binding Of Influenza Virus Hemagglutinin To Analogs Of
Its Cell- Surface Receptor, Sialic Acid: Analysis By
Proton Nuclear Magnetic Resonance Spectroscopy And
X-ray Crystallography
Length = 175
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 8 DEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGR 65
D WY F N + A ++T+A ++ GK ++ +K ++ ++K EGR
Sbjct: 19 DGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGR 76
>pdb|5HMG|B Chain B, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|5HMG|D Chain D, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|5HMG|F Chain F, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
Length = 175
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 8 DEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGR 65
D WY F N + A ++T+A ++ GK ++ +K ++ ++K EGR
Sbjct: 19 DGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGR 76
>pdb|3VUN|B Chain B, Crystal Structure Of A Influenza A Virus (AAICHI21968
H3N2) Hemagglutinin In C2 Space Group.
pdb|3VUN|D Chain D, Crystal Structure Of A Influenza A Virus (AAICHI21968
H3N2) Hemagglutinin In C2 Space Group.
pdb|3VUN|F Chain F, Crystal Structure Of A Influenza A Virus (AAICHI21968
H3N2) Hemagglutinin In C2 Space Group
Length = 175
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 8 DEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGR 65
D WY F N + A ++T+A ++ GK ++ +K ++ ++K EGR
Sbjct: 19 DGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGR 76
>pdb|3EYJ|B Chain B, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
pdb|3EYK|B Chain B, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
Length = 172
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 8 DEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGR 65
D WY F N + +A ++T+A ++ GK ++ +K ++ ++K EGR
Sbjct: 19 DGWYGFRHQNAEGTGTAADLKSTQAAIDQINGKLNRLIEKTNEKYHQIEKEFEQVEGR 76
>pdb|2BMO|B Chain B, The Crystal Structure Of Nitrobenzene Dioxygenase
pdb|2BMQ|B Chain B, The Crystal Structure Of Nitrobenzene Dioxygenase In
Complex With Nitrobenzene
pdb|2BMR|B Chain B, The Crystal Structure Of Nitrobenzene Dioxygenase In
Complex With 3-Nitrotoluene
Length = 194
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 46 DKNRKEVIGVKKNLVFYEGRGSNAVKTSWVIHE 78
DK+ E++ V+ NL+ + R N V + E
Sbjct: 128 DKSAPEILHVRSNLILHRARRENQVDVFYATRE 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.129 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,105,009
Number of Sequences: 62578
Number of extensions: 111567
Number of successful extensions: 228
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 24
length of query: 98
length of database: 14,973,337
effective HSP length: 64
effective length of query: 34
effective length of database: 10,968,345
effective search space: 372923730
effective search space used: 372923730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)