Query 036036
Match_columns 98
No_of_seqs 104 out of 680
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 14:48:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036036.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036036hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ut7_A No apical meristem prot 100.0 3.6E-33 1.2E-37 196.6 11.5 93 3-97 66-163 (171)
2 3ulx_A Stress-induced transcri 100.0 4.5E-33 1.5E-37 196.6 11.0 93 3-97 64-166 (174)
3 4fr9_A Uncharacterized protein 13.0 1.2E+02 0.0041 19.4 2.2 13 71-83 57-69 (144)
4 2npn_A Putative cobalamin synt 8.6 83 0.0028 21.7 0.2 12 70-81 236-247 (251)
5 2y9w_C Lectin-like fold protei 8.3 4.4E+02 0.015 16.7 3.7 45 27-79 14-58 (150)
6 3hia_A Choline binding protein 8.2 1.6E+02 0.0054 17.4 1.4 11 6-16 41-51 (94)
7 1na6_A Ecorii, restriction end 8.1 3.2E+02 0.011 21.1 3.3 22 56-82 79-100 (404)
8 3u1w_A Hypothetical periplasmi 7.5 2.1E+02 0.0072 20.0 2.0 17 71-87 54-70 (253)
9 2hje_A Autoinducer 2 sensor ki 7.2 2.6E+02 0.0088 19.8 2.3 16 41-56 121-136 (221)
10 4eqa_C PA1845 protein, putativ 6.8 2E+02 0.0069 18.5 1.4 9 74-82 82-90 (153)
No 1
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=3.6e-33 Score=196.61 Aligned_cols=93 Identities=37% Similarity=0.724 Sum_probs=75.8
Q ss_pred cccCCCeEEEEEeccCCCcCCCcceeeecceEEEEeCCCeeEEcCCCCeEEEEEEEEEEeeccCCCCcccCeEEEEEEeC
Q 036036 3 AIRDDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRGSNAVKTSWVIHEYHSN 82 (98)
Q Consensus 3 a~~~~~~wYFFs~~~~k~~~g~R~~R~t~~G~Wk~~g~~k~I~~~~~~~~iG~kk~l~Fy~g~~~~~~kT~WvM~EY~l~ 82 (98)
+..++++|||||++.+|+++|.|++|+|++||||++|++++|.+ ++.+||+||+|+||.|++|++.+|+|+||||+|.
T Consensus 66 ~~~g~~ewyFFs~r~~k~~~g~R~~R~t~~G~Wk~tG~~k~I~~--~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~ 143 (171)
T 1ut7_A 66 ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLI 143 (171)
T ss_dssp SSSCSSEEEEEEECCC-------CCEEETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEEC
T ss_pred hhcCCccEEEEeccccccCCCCcccccCCCCEEeccCCCceEEe--cCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcC
Confidence 34678999999999999999999999999999999999999997 4589999999999999999999999999999999
Q ss_pred CCCC-----CCCceEEEEec
Q 036036 83 NASA-----YQAFSYFTFVF 97 (98)
Q Consensus 83 ~~~~-----~~~~~~~~~~~ 97 (98)
.++. .+..-++|+||
T Consensus 144 ~~~~~~~~~~~~~~VlCrv~ 163 (171)
T 1ut7_A 144 EPSRRNGSTKLDDWVLCRIY 163 (171)
T ss_dssp CCC--------CCEEEEEEE
T ss_pred CCccccCcccCCCEEEEEEE
Confidence 8752 34566888987
No 2
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=4.5e-33 Score=196.65 Aligned_cols=93 Identities=37% Similarity=0.752 Sum_probs=76.8
Q ss_pred cccCCCeEEEEEeccCCCcCCCcceeeecceEEEEeCCCeeEEcCCCCeEEEEEEEEEEeeccCCCCcccCeEEEEEEeC
Q 036036 3 AIRDDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRGSNAVKTSWVIHEYHSN 82 (98)
Q Consensus 3 a~~~~~~wYFFs~~~~k~~~g~R~~R~t~~G~Wk~~g~~k~I~~~~~~~~iG~kk~l~Fy~g~~~~~~kT~WvM~EY~l~ 82 (98)
+..++++|||||++.+|+++|.|++|+|++||||++|++++|.+ ++.+||+||+|+||.|++|++.+|+|+||||+|.
T Consensus 64 ~~~g~~ewYFFs~r~~ky~~g~R~nR~t~~G~WkatG~dk~I~~--~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~ 141 (174)
T 3ulx_A 64 ALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAP--RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLA 141 (174)
T ss_dssp CSSCSSEEEEEEECCC-----CCSCEEETTEEEEECSCCEEECC--SSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEEC
T ss_pred hccCCceEEEEeccccccCCCCCceeecCCceEccCCCCcEEee--CCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeC
Confidence 34578899999999999999999999999999999999999987 3679999999999999999999999999999998
Q ss_pred CCCCCC----------CceEEEEec
Q 036036 83 NASAYQ----------AFSYFTFVF 97 (98)
Q Consensus 83 ~~~~~~----------~~~~~~~~~ 97 (98)
.+.... .-=++|+||
T Consensus 142 ~~~~~~~~~~~~~~~~~~wVlCrvf 166 (174)
T 3ulx_A 142 DAGRAAAGAKKGSLRLDDWVLCRLY 166 (174)
T ss_dssp SCC-----------CCSSEEEEEEE
T ss_pred CCCCcccccccCCCCCCCEEEEEEE
Confidence 865421 234889998
No 3
>4fr9_A Uncharacterized protein; BLIP-like, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-biology; HET: MLY MSE; 1.20A {Bacteroides fragilis}
Probab=12.98 E-value=1.2e+02 Score=19.44 Aligned_cols=13 Identities=23% Similarity=0.647 Sum_probs=9.3
Q ss_pred ccCeEEEEEEeCC
Q 036036 71 KTSWVIHEYHSNN 83 (98)
Q Consensus 71 kT~WvM~EY~l~~ 83 (98)
...|+|+|+.+..
T Consensus 57 ~G~w~~te~ei~~ 69 (144)
T 4fr9_A 57 NANWLMTETELNS 69 (144)
T ss_dssp TSCEEEEEEEESS
T ss_pred CCCEEEEEeccCc
Confidence 4468888888743
No 4
>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD, struc genomics, SAM, S-adenosylmethionine, MCSG; HET: MSE SAM; 1.60A {Corynebacterium diphtheriae}
Probab=8.60 E-value=83 Score=21.66 Aligned_cols=12 Identities=17% Similarity=0.700 Sum_probs=10.1
Q ss_pred cccCeEEEEEEe
Q 036036 70 VKTSWVIHEYHS 81 (98)
Q Consensus 70 ~kT~WvM~EY~l 81 (98)
.+.+|+|..|-|
T Consensus 236 ~~~~~~~d~~~~ 247 (251)
T 2npn_A 236 TEHGWIMDTYLL 247 (251)
T ss_dssp HHHSCCCEEEEE
T ss_pred hhhccHhHHHHh
Confidence 368999999976
No 5
>2y9w_C Lectin-like fold protein, polyphenol oxidase; oxidoreductase, copper-containing, pigmentation, type-3 COPP protein; HET: PGE; 2.30A {Agaricus bisporus} PDB: 2y9x_E
Probab=8.33 E-value=4.4e+02 Score=16.74 Aligned_cols=45 Identities=18% Similarity=0.476 Sum_probs=23.1
Q ss_pred eeeecceEEEEeCCCeeEEcCCCCeEEEEEEEEEEeeccCCCCcccCeEEEEE
Q 036036 27 ERTTRAGHWKVTGKDRQIWDKNRKEVIGVKKNLVFYEGRGSNAVKTSWVIHEY 79 (98)
Q Consensus 27 ~R~t~~G~Wk~~g~~k~I~~~~~~~~iG~kk~l~Fy~g~~~~~~kT~WvM~EY 79 (98)
.|...+--|--......+.. ..+.+| .+....|..-...|++|.|
T Consensus 14 trilnganwannsatenlat-nsgtli-------ifdqstpgqdadrwlihny 58 (150)
T 2y9w_C 14 TRILNGANWANNSATENLAT-NSGTLI-------IFDQSTPGQDADRWLIHNY 58 (150)
T ss_dssp BEEEETTEEEEECCC-------CCEEE-------EEESCCCSTTTTCEEEEEE
T ss_pred ceeeccccccccchhhhhhc-CCceEE-------EEcCCCCCCcchhhhhhhc
Confidence 34455667888777766654 234333 2233334444567999987
No 6
>3hia_A Choline binding protein; beta hairpin; 2.38A {Streptococcus pneumoniae}
Probab=8.17 E-value=1.6e+02 Score=17.44 Aligned_cols=11 Identities=18% Similarity=0.939 Sum_probs=8.2
Q ss_pred CCCeEEEEEec
Q 036036 6 DDDEWYFFSEH 16 (98)
Q Consensus 6 ~~~~wYFFs~~ 16 (98)
.++.||||.+-
T Consensus 41 ~~g~wYYf~~~ 51 (94)
T 3hia_A 41 VNGSWYYLNSN 51 (94)
T ss_dssp ETTEEEEECTT
T ss_pred ECCEEEEECCC
Confidence 46789999653
No 7
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=8.06 E-value=3.2e+02 Score=21.13 Aligned_cols=22 Identities=9% Similarity=0.250 Sum_probs=17.8
Q ss_pred EEEEEEeeccCCCCcccCeEEEEEEeC
Q 036036 56 KKNLVFYEGRGSNAVKTSWVIHEYHSN 82 (98)
Q Consensus 56 kk~l~Fy~g~~~~~~kT~WvM~EY~l~ 82 (98)
.-.++||..+-.+++++ ||+|.
T Consensus 79 d~~~twYn~R~~~~tRn-----EyRLt 100 (404)
T 1na6_A 79 EARAIYYNSAHFGKTRN-----EKRIT 100 (404)
T ss_dssp EEEEEEECGGGTTSCCC-----EEEEE
T ss_pred EEEEEEecccccCCCCC-----ceEEe
Confidence 67899999876666776 99998
No 8
>3u1w_A Hypothetical periplasmic protein; BLIP-like, structural genomics, joint center for structural JCSG, protein structure initiative; 2.00A {Parabacteroides distasonis}
Probab=7.51 E-value=2.1e+02 Score=19.97 Aligned_cols=17 Identities=12% Similarity=0.247 Sum_probs=11.9
Q ss_pred ccCeEEEEEEeCCCCCC
Q 036036 71 KTSWVIHEYHSNNASAY 87 (98)
Q Consensus 71 kT~WvM~EY~l~~~~~~ 87 (98)
...|+|+|..+..+..|
T Consensus 54 ~G~w~~te~~i~~~~LP 70 (253)
T 3u1w_A 54 QGIWMMEKIDISFAQLP 70 (253)
T ss_dssp TCCEEEEEEEECGGGSC
T ss_pred CCcEEEEEeeCchhhCC
Confidence 34699999888755444
No 9
>2hje_A Autoinducer 2 sensor kinase/phosphatase LUXQ; PER/ARNT/simple-minded (PAS) fold, autoinducer-2 (AI-2), quorum sensing, histidine sensor kinase; 1.70A {Vibrio harveyi} SCOP: d.110.6.3 PDB: 2hj9_C 1zhh_B*
Probab=7.15 E-value=2.6e+02 Score=19.83 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=12.9
Q ss_pred CeeEEcCCCCeEEEEE
Q 036036 41 DRQIWDKNRKEVIGVK 56 (98)
Q Consensus 41 ~k~I~~~~~~~~iG~k 56 (98)
..||++..+|+|+|+-
T Consensus 121 R~pIi~~~tGeVlG~L 136 (221)
T 2hje_A 121 RVPILDPSTGEVLGFS 136 (221)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred ccceecCCCCcEEEEE
Confidence 4578888899999974
No 10
>4eqa_C PA1845 protein, putative uncharacterized protein; type VI secretion, T6S, antitoxin-toxin complex, unknown FUN; 1.60A {Pseudomonas aeruginosa} PDB: 4fgi_B
Probab=6.84 E-value=2e+02 Score=18.46 Aligned_cols=9 Identities=22% Similarity=0.648 Sum_probs=7.0
Q ss_pred eEEEEEEeC
Q 036036 74 WVIHEYHSN 82 (98)
Q Consensus 74 WvM~EY~l~ 82 (98)
=+||||+=.
T Consensus 82 vlmhefsgs 90 (153)
T 4eqa_C 82 VLMHEFSGS 90 (153)
T ss_dssp EEEEEEETT
T ss_pred eeeeeccCC
Confidence 589999754
Done!