BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036039
         (508 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1F1S|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
           Lyase At 2.1 Angstrom Resolution.
 pdb|1I8Q|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
           Lyase Complexed With Enzyme Product, Unsaturated
           Disaccharide Hyaluronan
 pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
           Lyase Complexed With Hexasaccharide Unit Of Hyaluronan
          Length = 814

 Score = 34.3 bits (77), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 8/58 (13%)

Query: 406 GGPVVDGMQQMVVALGKLENLEGFVRQADNLRQQTLHQLRRILTVRQAARCFLVIGEY 463
           GG +VD        +G+++ +EG +R+ + + ++T H L+ + T    A  F   G Y
Sbjct: 257 GGNLVD--------MGRVKIIEGLLRKDNTIIEKTSHSLKNLFTTATKAEGFYADGSY 306


>pdb|1DH3|A Chain A, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
           Basis For Creb Faimly Selective Dimerization And Dna
           Binding
 pdb|1DH3|C Chain C, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
           Basis For Creb Faimly Selective Dimerization And Dna
           Binding
          Length = 55

 Score = 33.9 bits (76), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/24 (66%), Positives = 20/24 (83%)

Query: 210 RLAQNREAARKSRLRKKAYVQQLE 233
           RL +NREAAR+SR +KK YV+ LE
Sbjct: 5   RLMKNREAARESRRKKKEYVKSLE 28


>pdb|2FTN|A Chain A, E. Coli Thymidylate Synthase Y94f Mutant
 pdb|2FTO|X Chain X, Y94f Mutant Of Thymidylate Synthase Bound To
           Thymidine-5'-Phosphate And 10-Propargyl-5,8-Dideazafolid
           Acid
          Length = 264

 Score = 29.6 bits (65), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 271 IFDMEYARWLEDDQRHISELRSGLNQHYSDGD-LRIIVDAY 310
           +F  ++  W   D RHI ++ + LNQ  +D D  RIIV A+
Sbjct: 93  VFGKQWRAWPTPDGRHIDQITTVLNQLKNDPDSRRIIVSAW 133


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.129    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,087,485
Number of Sequences: 62578
Number of extensions: 493687
Number of successful extensions: 1515
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1488
Number of HSP's gapped (non-prelim): 39
length of query: 508
length of database: 14,973,337
effective HSP length: 103
effective length of query: 405
effective length of database: 8,527,803
effective search space: 3453760215
effective search space used: 3453760215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)