Query 036039
Match_columns 508
No_of_seqs 199 out of 251
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 14:51:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036039.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036039hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 98.9 8.7E-10 3E-14 85.8 5.8 44 206-252 1-44 (55)
2 2dgc_A Protein (GCN4); basic d 98.5 1.8E-07 6.2E-12 74.6 6.1 40 203-245 6-45 (63)
3 1jnm_A Proto-oncogene C-JUN; B 98.3 9.5E-07 3.3E-11 69.7 5.8 40 206-248 1-40 (62)
4 1t2k_D Cyclic-AMP-dependent tr 98.2 1.5E-06 5E-11 68.3 5.8 40 206-248 1-40 (61)
5 2wt7_A Proto-oncogene protein 98.2 2.2E-06 7.5E-11 67.9 6.6 42 206-250 2-43 (63)
6 1gd2_E Transcription factor PA 97.9 1.2E-05 4E-10 65.6 4.9 39 207-248 9-47 (70)
7 2y39_A Nickel and cobalt resis 97.2 0.0049 1.7E-07 54.8 13.1 100 355-463 10-112 (118)
8 1ci6_A Transcription factor AT 97.0 0.00068 2.3E-08 53.8 4.4 41 206-249 2-42 (63)
9 1gu4_A CAAT/enhancer binding p 95.9 0.018 6.3E-07 47.7 7.1 50 198-250 7-56 (78)
10 3a5t_A Transcription factor MA 95.8 0.0032 1.1E-07 55.1 1.9 43 205-250 36-78 (107)
11 1hjb_A Ccaat/enhancer binding 95.2 0.049 1.7E-06 46.0 7.1 49 199-250 8-56 (87)
12 3itf_A Periplasmic adaptor pro 94.9 0.17 5.9E-06 46.1 10.3 100 362-470 42-141 (145)
13 2wt7_B Transcription factor MA 87.2 1.4 4.7E-05 37.5 6.6 44 204-250 25-68 (90)
14 3oeo_A Spheroplast protein Y; 86.9 0.27 9.4E-06 44.0 2.3 100 360-468 28-127 (138)
15 3o39_A Periplasmic protein rel 86.0 1.1 3.7E-05 39.0 5.4 82 366-456 17-99 (108)
16 3lay_A Zinc resistance-associa 82.4 14 0.00047 34.6 11.6 44 366-409 67-110 (175)
17 1skn_P DNA-binding domain of S 77.4 1.1 3.8E-05 38.2 2.3 30 204-233 60-89 (92)
18 2ksd_A Aerobic respiration con 62.8 0.53 1.8E-05 41.7 -2.9 29 228-256 76-104 (115)
19 2ke4_A CDC42-interacting prote 61.5 50 0.0017 28.1 9.1 59 365-424 9-72 (98)
20 3he4_B Synzip5; heterodimeric 55.1 14 0.00049 27.2 4.0 27 225-251 8-34 (46)
21 2c9l_Y EB1, zebra, BZLF1 trans 53.6 25 0.00085 27.6 5.4 22 209-230 4-25 (63)
22 2er8_A Regulatory protein Leu3 53.3 6.2 0.00021 30.4 2.0 23 225-250 47-69 (72)
23 1zme_C Proline utilization tra 49.3 14 0.00048 28.0 3.4 24 225-251 42-65 (70)
24 2kz5_A Transcription factor NF 45.5 3.5 0.00012 35.2 -0.6 21 206-226 66-86 (91)
25 1hwt_C Protein (heme activator 44.8 9.8 0.00034 29.7 1.9 28 220-250 51-78 (81)
26 4abm_A Charged multivesicular 39.2 44 0.0015 27.4 5.0 36 212-247 41-76 (79)
27 3plt_A Sphingolipid long chain 36.4 42 0.0014 32.9 5.2 44 212-255 99-149 (234)
28 4i0x_B ESAT-6-like protein MAB 34.8 1.2E+02 0.0042 24.6 7.3 49 227-287 25-73 (103)
29 3frh_A 16S rRNA methylase; met 30.5 57 0.002 32.2 5.2 83 198-319 16-98 (253)
30 1k1f_A Breakpoint cluster regi 29.2 41 0.0014 27.4 3.2 21 230-250 33-53 (72)
31 1gmj_A ATPase inhibitor; coile 27.1 1.1E+02 0.0038 25.7 5.6 27 223-250 45-71 (84)
32 1hlo_A Protein (transcription 25.2 42 0.0014 26.9 2.7 24 227-253 57-80 (80)
33 1pyi_A Protein (pyrimidine pat 25.1 51 0.0017 26.4 3.2 22 226-250 47-68 (96)
34 3coq_A Regulatory protein GAL4 23.5 62 0.0021 25.4 3.4 22 226-250 44-65 (89)
35 1s16_A Topoisomerase IV subuni 22.4 23 0.00078 36.5 0.7 16 211-226 375-390 (390)
36 2vs0_A Virulence factor ESXA; 22.0 2.8E+02 0.0094 21.4 7.2 65 203-291 6-70 (97)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=98.95 E-value=8.7e-10 Score=85.80 Aligned_cols=44 Identities=43% Similarity=0.566 Sum_probs=39.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHhhc
Q 036039 206 KTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQRARSQ 252 (508)
Q Consensus 206 k~~RRLAQNREaARkSRlRKKaYvqqLE~sr~kL~qLeqel~rar~q 252 (508)
|.++|+..|||+|+.||.|||+||+.||. ++.+|+.|-...+.+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~---~v~~L~~eN~~L~~~ 44 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLEN---RVAVLENQNKTLIEE 44 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999 688999988777654
No 2
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=98.48 E-value=1.8e-07 Score=74.56 Aligned_cols=40 Identities=35% Similarity=0.405 Sum_probs=29.4
Q ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHH
Q 036039 203 LDAKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQE 245 (508)
Q Consensus 203 ~d~k~~RRLAQNREaARkSRlRKKaYvqqLE~sr~kL~qLeqe 245 (508)
.+|+..+|-++||||||+||.|||+|+..||.. +.+|+.|
T Consensus 6 ~~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~---v~~L~~e 45 (63)
T 2dgc_A 6 SSDPAALKRARNTEAARRSRARKLQRMKQLEDK---VEELLSK 45 (63)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred cccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 345677777889999999999999999999994 4444444
No 3
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=98.29 E-value=9.5e-07 Score=69.66 Aligned_cols=40 Identities=38% Similarity=0.429 Sum_probs=33.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHH
Q 036039 206 KTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQR 248 (508)
Q Consensus 206 k~~RRLAQNREaARkSRlRKKaYvqqLE~sr~kL~qLeqel~r 248 (508)
|..||..+||+||+|||.|||.|++.||. ++..|+.+-..
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~---~v~~L~~~n~~ 40 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEE---KVKTLKAQNSE 40 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 46789999999999999999999999999 56555555443
No 4
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=98.23 E-value=1.5e-06 Score=68.31 Aligned_cols=40 Identities=38% Similarity=0.473 Sum_probs=33.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHH
Q 036039 206 KTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQR 248 (508)
Q Consensus 206 k~~RRLAQNREaARkSRlRKKaYvqqLE~sr~kL~qLeqel~r 248 (508)
|-.+||..||+||+|||.|||.|++.||. ++..|+.+-..
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~---~~~~L~~~n~~ 40 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEK---KAEDLSSLNGQ 40 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 35789999999999999999999999999 45555555443
No 5
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=98.22 E-value=2.2e-06 Score=67.91 Aligned_cols=42 Identities=31% Similarity=0.383 Sum_probs=34.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHh
Q 036039 206 KTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQRAR 250 (508)
Q Consensus 206 k~~RRLAQNREaARkSRlRKKaYvqqLE~sr~kL~qLeqel~rar 250 (508)
|-.+|+-.||+||+|||.|||.|++.||. ++.+|+.+-...+
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~---~v~~L~~~n~~L~ 43 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQA---ETDQLEDEKSALQ 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 67899999999999999999999999999 5666665544433
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=97.88 E-value=1.2e-05 Score=65.59 Aligned_cols=39 Identities=36% Similarity=0.409 Sum_probs=34.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHH
Q 036039 207 TLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQR 248 (508)
Q Consensus 207 ~~RRLAQNREaARkSRlRKKaYvqqLE~sr~kL~qLeqel~r 248 (508)
..+|-||||+|+|-.|-||++||..||. |+.+||.+.+.
T Consensus 9 ~~kR~~qNR~AQRafReRK~~~i~~LE~---~v~~le~~~~~ 47 (70)
T 1gd2_E 9 SSKRKAQNRAAQRAFRKRKEDHLKALET---QVVTLKELHSS 47 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 4688999999999999999999999999 67888766554
No 7
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=97.25 E-value=0.0049 Score=54.81 Aligned_cols=100 Identities=18% Similarity=0.207 Sum_probs=77.1
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 036039 355 ELIKMLISQLDPLTEQQVMGIYSLQQSTQQAEEALSQGLEQLQQSLIETIAGGPVVDGMQQMVVALGKLENLEGFVRQAD 434 (508)
Q Consensus 355 ellkLL~~qLepLTeqQL~~I~~LqqstqqaEdALSqgMe~LQqsLAD~la~g~v~d~~~qma~Am~KL~~Le~fl~qAD 434 (508)
.+=.+|...| +||++|...|..+...-.....+|.++|..--..|++.+...+- |..++..|+..+ -...-
T Consensus 10 ~lH~~vh~~L-~Lt~~Q~~~leaie~~fa~~r~~le~emRaan~~La~ai~~~~~--~~p~V~aaid~~------h~~mG 80 (118)
T 2y39_A 10 DLHEILHEAV-PLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPA--WSPEVEAATQEV------ERAAG 80 (118)
T ss_dssp CHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS--CCHHHHHHHHHH------HHHHH
T ss_pred chHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCHHHHHHHHHH------HHHHH
Confidence 3444567777 69999999999999999999999999999999999999865432 455665554333 33555
Q ss_pred HHHHHH---HHHHHHhcCHHHHHHHHHHHHHH
Q 036039 435 NLRQQT---LHQLRRILTVRQAARCFLVIGEY 463 (508)
Q Consensus 435 ~LR~qT---L~ql~~ILTprQAArfLLA~~ey 463 (508)
.|+..| +-+|..||||-|+.+|=-.+.+-
T Consensus 81 ~LQkeTi~HvfeMR~VLtPeQ~~~fd~~vv~a 112 (118)
T 2y39_A 81 DLQRATLVHVFEMRAGLKPEHRPAYDRVLIDA 112 (118)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 688888 55788999999999996655543
No 8
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=96.97 E-value=0.00068 Score=53.77 Aligned_cols=41 Identities=29% Similarity=0.437 Sum_probs=29.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHH
Q 036039 206 KTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQRA 249 (508)
Q Consensus 206 k~~RRLAQNREaARkSRlRKKaYvqqLE~sr~kL~qLeqel~ra 249 (508)
|-.|+.-+||.||+++|.|||.+++.||. ++.+|+++-...
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~---~~~~L~~~N~~L 42 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTG---ECKELEKKNEAL 42 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 34678889999999999999999999999 566666554443
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=95.95 E-value=0.018 Score=47.68 Aligned_cols=50 Identities=24% Similarity=0.185 Sum_probs=35.5
Q ss_pred CCCccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHh
Q 036039 198 TSDRQLDAKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQRAR 250 (508)
Q Consensus 198 ~~~~~~d~k~~RRLAQNREaARkSRlRKKaYvqqLE~sr~kL~qLeqel~rar 250 (508)
+.....|++-..|--.|.+||||||-.+|.-.+.++. ++.+||+|=...+
T Consensus 7 k~~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~---r~~~L~~eN~~L~ 56 (78)
T 1gu4_A 7 KTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQH---KVLELTAENERLQ 56 (78)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred CCcccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3344556777788899999999999999999888876 4555555544433
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=95.76 E-value=0.0032 Score=55.11 Aligned_cols=43 Identities=28% Similarity=0.400 Sum_probs=34.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHh
Q 036039 205 AKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQRAR 250 (508)
Q Consensus 205 ~k~~RRLAQNREaARkSRlRKKaYvqqLE~sr~kL~qLeqel~rar 250 (508)
=|-.||--.||++|++||.||.+.+..||. .+.+|.+|+++.+
T Consensus 36 lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~---e~~~L~~e~e~L~ 78 (107)
T 3a5t_A 36 LKQRRRTLKNRGYAASCRVKRVTQKEELEK---QKAELQQEVEKLA 78 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTTSSTTTTTT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 378899999999999999999999999998 4555555554433
No 11
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=95.18 E-value=0.049 Score=46.02 Aligned_cols=49 Identities=24% Similarity=0.188 Sum_probs=36.0
Q ss_pred CCccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHh
Q 036039 199 SDRQLDAKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQRAR 250 (508)
Q Consensus 199 ~~~~~d~k~~RRLAQNREaARkSRlRKKaYvqqLE~sr~kL~qLeqel~rar 250 (508)
...+.|++-.+|--.|.+||||||-.+|.=.+.++. ++.+||+|=...|
T Consensus 8 ~~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~---r~~~Le~EN~~Lr 56 (87)
T 1hjb_A 8 TVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQH---KVLELTAENERLQ 56 (87)
T ss_dssp --CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred CcCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 344456778888899999999999999988888876 4556665555444
No 12
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=94.88 E-value=0.17 Score=46.05 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=61.4
Q ss_pred hhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036039 362 SQLDPLTEQQVMGIYSLQQSTQQAEEALSQGLEQLQQSLIETIAGGPVVDGMQQMVVALGKLENLEGFVRQADNLRQQTL 441 (508)
Q Consensus 362 ~qLepLTeqQL~~I~~LqqstqqaEdALSqgMe~LQqsLAD~la~g~v~d~~~qma~Am~KL~~Le~fl~qAD~LR~qTL 441 (508)
..| +||++|..+|..|.+..+.+...+.. + .-+.+-+.+.+++... +.+-..++.+...-.+.--.|.++-
T Consensus 42 ~~L-~LTdeQkqqir~L~~~~r~~~~~~~~--~-~r~~l~~Li~ad~fDe-----aa~ral~~~~~~~~~e~~v~r~k~~ 112 (145)
T 3itf_A 42 DGI-SLTEHQRQQMRDLMQQARHEQPPVNV--S-ELETMHRLVTAENFDE-----NAVRAQAEKMANEQIARQVEMAKVR 112 (145)
T ss_dssp TTC-CCCHHHHHHHHHHHHHHHHHSCCCCH--H-HHHHHHHHHTCSSCCH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccC-CCCHHHHHHHHHHHHHHHHHhhhccH--H-HHHHHHHHHccCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345 59999999999999887766544432 1 1123444444444311 1111223444444455555778888
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHhh
Q 036039 442 HQLRRILTVRQAARCFLVIGEYYGRLRAL 470 (508)
Q Consensus 442 ~ql~~ILTprQAArfLLA~~ey~~RLRaL 470 (508)
.+|..||||-|-+.|---..+-..+++.+
T Consensus 113 ~qiy~vLTPEQk~ql~e~~~~r~~~~~~~ 141 (145)
T 3itf_A 113 NQMYRLLTPEQQAVLNEKHQQRMEQLRDV 141 (145)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999966555544444443
No 13
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=87.22 E-value=1.4 Score=37.50 Aligned_cols=44 Identities=27% Similarity=0.353 Sum_probs=35.1
Q ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHh
Q 036039 204 DAKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQRAR 250 (508)
Q Consensus 204 d~k~~RRLAQNREaARkSRlRKKaYvqqLE~sr~kL~qLeqel~rar 250 (508)
.=|-.||=-+||-+|.++|-||-.-+..||.. ..+|..|++.-+
T Consensus 25 ~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e---~~~L~~e~~~L~ 68 (90)
T 2wt7_B 25 RLKQKRRTLKNRGYAQSCRYKRVQQKHHLENE---KTQLIQQVEQLK 68 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 44677899999999999999999999999985 555555555544
No 14
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=86.94 E-value=0.27 Score=44.00 Aligned_cols=100 Identities=12% Similarity=0.102 Sum_probs=55.6
Q ss_pred HHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036039 360 LISQLDPLTEQQVMGIYSLQQSTQQAEEALSQGLEQLQQSLIETIAGGPVVDGMQQMVVALGKLENLEGFVRQADNLRQQ 439 (508)
Q Consensus 360 L~~qLepLTeqQL~~I~~LqqstqqaEdALSqgMe~LQqsLAD~la~g~v~d~~~qma~Am~KL~~Le~fl~qAD~LR~q 439 (508)
+...| +||++|..+|..|.+..+..-.. .+....+.|.+.+.+++... ..+ -..++.+...-.+.--.|.+
T Consensus 28 m~~~L-~LT~eQ~~qir~i~~~~r~~~~~---~~~~~r~~l~~Li~a~~fDe--aav---~al~~~~~~~~~e~~~~~~~ 98 (138)
T 3oeo_A 28 MFKDL-NLTDAQKQQIREIMKGQRDQMKR---PPLEERRAMHDIITSDTFDK--VKA---EAQIAKMEEQRKANMLAHME 98 (138)
T ss_dssp --CCS-CCCTTHHHHHHHHHHHHSSSSCC---CCTTHHHHHHHHHTCSSCCH--HHH---HHHHGGGSHHHHHHHHHHHH
T ss_pred HHhcC-CCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCCCCH--HHH---HHHHHHHHHHHHHHHHHHHH
Confidence 44666 59999999999998776554221 12223344444444443311 111 12223333344445556788
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 036039 440 TLHQLRRILTVRQAARCFLVIGEYYGRLR 468 (508)
Q Consensus 440 TL~ql~~ILTprQAArfLLA~~ey~~RLR 468 (508)
+..+|..||||-|-+.|---+.+-..+++
T Consensus 99 ~~~~~~~vLTPEQr~q~~~~~~kr~~~~~ 127 (138)
T 3oeo_A 99 TQNKIYNILTPEQKKQFNANFEKRLTERP 127 (138)
T ss_dssp HHHHHHTTSCHHHHHHHHHHTC-------
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999665555444443
No 15
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=85.96 E-value=1.1 Score=38.99 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=46.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036039 366 PLTEQQVMGIYSLQQSTQQAEEALS-QGLEQLQQSLIETIAGGPVVDGMQQMVVALGKLENLEGFVRQADNLRQQTLHQL 444 (508)
Q Consensus 366 pLTeqQL~~I~~LqqstqqaEdALS-qgMe~LQqsLAD~la~g~v~d~~~qma~Am~KL~~Le~fl~qAD~LR~qTL~ql 444 (508)
+||++|...|..|....+..-.... ... +.+-+.+.+++..+ ..+. .-++.+...-.+.--.|.++=.+|
T Consensus 17 ~LTd~Qk~qir~L~~~~r~~~~~~~~~~r----~~m~~Li~ad~FDE--aaar---~l~~~~~~~~~e~~v~~~r~~~qm 87 (108)
T 3o39_A 17 NLTDAQKQQIREIMKGQRDQMKRPPLEER----RAMHDIIASDTFDK--AKAE---AQIAKMEEQRKANMLAHMETQNKI 87 (108)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCCHHHH----HHHHHHHSSSSCCH--HHHH---HHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcccccHHHH----HHHHHHhccCCCCH--HHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999887665532222 112 23444444444321 1111 111222222222223456677899
Q ss_pred HHhcCHHHHHHH
Q 036039 445 RRILTVRQAARC 456 (508)
Q Consensus 445 ~~ILTprQAArf 456 (508)
..||||-|-+.|
T Consensus 88 y~lLTPEQk~q~ 99 (108)
T 3o39_A 88 YNILTPEQKKQF 99 (108)
T ss_dssp HTTSCHHHHHHH
T ss_pred HHhCCHHHHHHH
Confidence 999999999987
No 16
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=82.39 E-value=14 Score=34.57 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=38.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 036039 366 PLTEQQVMGIYSLQQSTQQAEEALSQGLEQLQQSLIETIAGGPV 409 (508)
Q Consensus 366 pLTeqQL~~I~~LqqstqqaEdALSqgMe~LQqsLAD~la~g~v 409 (508)
+||++|..+|..|.++-+..-.+|.+.|...++.|-+.+.+++.
T Consensus 67 nLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~ 110 (175)
T 3lay_A 67 PLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSP 110 (175)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 69999999999999999999999999999999998887766543
No 17
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=77.45 E-value=1.1 Score=38.23 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=23.6
Q ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 036039 204 DAKTLRRLAQNREAARKSRLRKKAYVQQLE 233 (508)
Q Consensus 204 d~k~~RRLAQNREaARkSRlRKKaYvqqLE 233 (508)
.-+-.||=..||.||+++|.||..-+..||
T Consensus 60 ~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~ 89 (92)
T 1skn_P 60 LIRKIRRRGKNKVAARTCRQRRTDRHDKMS 89 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence 346678889999999999999987655544
No 18
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=62.84 E-value=0.53 Score=41.71 Aligned_cols=29 Identities=38% Similarity=0.385 Sum_probs=13.1
Q ss_pred HHHHHHHhHHHHhhHHHHHHHHhhccccc
Q 036039 228 YVQQLETSRIKLNQLEQELQRARSQVNFD 256 (508)
Q Consensus 228 YvqqLE~sr~kL~qLeqel~rar~qg~~~ 256 (508)
-|+|||.||.+|+++=.+|++.|+|..+.
T Consensus 76 vVe~LE~SR~~Ls~~V~~Le~~r~~d~~l 104 (115)
T 2ksd_A 76 VVEQLEESRQRLSRLVQKLEEMRERDLSL 104 (115)
T ss_dssp HHHCCCSSCCCCCC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999998775
No 19
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=61.45 E-value=50 Score=28.10 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=40.4
Q ss_pred CCCcHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchhhHHHHHHHHHH
Q 036039 365 DPLTEQQV-----MGIYSLQQSTQQAEEALSQGLEQLQQSLIETIAGGPVVDGMQQMVVALGKLE 424 (508)
Q Consensus 365 epLTeqQL-----~~I~~LqqstqqaEdALSqgMe~LQqsLAD~la~g~v~d~~~qma~Am~KL~ 424 (508)
..|.++|. .+|+.|++.+.++.++ .++|.++.......+..|+...-..++...-.+|+
T Consensus 9 s~LPpeqRkkkL~~Ki~el~~ei~ke~~~-regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid 72 (98)
T 2ke4_A 9 SHLPPEQQRKRLQQQLEERSRELQKEVDQ-REALKKMKDVYEKTPQMGDPASLEPQIAETLSNIE 72 (98)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHH
Confidence 45777773 5778888888887777 77899999999998877665443334433333333
No 20
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=55.08 E-value=14 Score=27.18 Aligned_cols=27 Identities=33% Similarity=0.561 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhHHHHhhHHHHHHHHhh
Q 036039 225 KKAYVQQLETSRIKLNQLEQELQRARS 251 (508)
Q Consensus 225 KKaYvqqLE~sr~kL~qLeqel~rar~ 251 (508)
-|-|||.||.....|..|..-|.-|+.
T Consensus 8 lknyiqeleernaelknlkehlkfaka 34 (46)
T 3he4_B 8 LKNYIQELEERNAELKNLKEHLKFAKA 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 378999999998888888887777663
No 21
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=53.64 E-value=25 Score=27.64 Aligned_cols=22 Identities=45% Similarity=0.445 Sum_probs=16.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q 036039 209 RRLAQNREAARKSRLRKKAYVQ 230 (508)
Q Consensus 209 RRLAQNREaARkSRlRKKaYvq 230 (508)
++--.||-|+||+|.|=|-.+|
T Consensus 4 ~kryknr~asrk~rakfkn~lq 25 (63)
T 2c9l_Y 4 IKRYKNRVAARKSRAKFKQLLQ 25 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445799999999998664333
No 22
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=53.26 E-value=6.2 Score=30.36 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhHHHHhhHHHHHHHHh
Q 036039 225 KKAYVQQLETSRIKLNQLEQELQRAR 250 (508)
Q Consensus 225 KKaYvqqLE~sr~kL~qLeqel~rar 250 (508)
++.||+.||. ++.+||..|+..+
T Consensus 47 ~~~~~~~Le~---ri~~Le~~l~~l~ 69 (72)
T 2er8_A 47 KRARNEAIEK---RFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHCC-
T ss_pred cHHHHHHHHH---HHHHHHHHHHHHh
Confidence 4589999999 7999999988654
No 23
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=49.32 E-value=14 Score=28.02 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhHHHHhhHHHHHHHHhh
Q 036039 225 KKAYVQQLETSRIKLNQLEQELQRARS 251 (508)
Q Consensus 225 KKaYvqqLE~sr~kL~qLeqel~rar~ 251 (508)
++.||+.||. ++.+||+.|...++
T Consensus 42 ~~~~~~~L~~---ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 42 STKYLQQLQK---DLNDKTEENNRLKA 65 (70)
T ss_dssp EHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3469999998 79999999987764
No 24
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=45.53 E-value=3.5 Score=35.19 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=18.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 036039 206 KTLRRLAQNREAARKSRLRKK 226 (508)
Q Consensus 206 k~~RRLAQNREaARkSRlRKK 226 (508)
+-.||=..||.||+++|.||.
T Consensus 66 rdiRRRgKNKvAAqnCRKRKl 86 (91)
T 2kz5_A 66 RDIRRRGKNKVAAQNYRKRKL 86 (91)
T ss_dssp HHHHHHHHHHHHTTSCCCCCC
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 456888899999999999974
No 25
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=44.81 E-value=9.8 Score=29.75 Aligned_cols=28 Identities=21% Similarity=0.423 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhHHHHHHHHh
Q 036039 220 KSRLRKKAYVQQLETSRIKLNQLEQELQRAR 250 (508)
Q Consensus 220 kSRlRKKaYvqqLE~sr~kL~qLeqel~rar 250 (508)
+.++.++.||+.||. +|.+||..|...+
T Consensus 51 ~~~~~~~~~~~~L~~---ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 51 EKELLKDNELKKLRE---RVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHTTC----
T ss_pred ccccchHHHHHHHHH---HHHHHHHHHHHhc
Confidence 345567789999999 7999998877643
No 26
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=39.16 E-value=44 Score=27.37 Aligned_cols=36 Identities=31% Similarity=0.352 Sum_probs=28.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHH
Q 036039 212 AQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQ 247 (508)
Q Consensus 212 AQNREaARkSRlRKKaYvqqLE~sr~kL~qLeqel~ 247 (508)
..|+.+|-..=.|||.|=++|+.----+..||+.+.
T Consensus 41 ~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~ 76 (79)
T 4abm_A 41 TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 76 (79)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777778888998899888778889998764
No 27
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=36.38 E-value=42 Score=32.91 Aligned_cols=44 Identities=34% Similarity=0.399 Sum_probs=30.3
Q ss_pred HHhHHHH-HHHHHHHHHHHHHHHHhH------HHHhhHHHHHHHHhhcccc
Q 036039 212 AQNREAA-RKSRLRKKAYVQQLETSR------IKLNQLEQELQRARSQVNF 255 (508)
Q Consensus 212 AQNREaA-RkSRlRKKaYvqqLE~sr------~kL~qLeqel~rar~qg~~ 255 (508)
.+|||.. +.+|.||+.-..++.--. .||.-|||||.||.+..+.
T Consensus 99 IR~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lv 149 (234)
T 3plt_A 99 IRNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLV 149 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhH
Confidence 3688876 566777666655554211 4678999999999977544
No 28
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=34.83 E-value=1.2e+02 Score=24.61 Aligned_cols=49 Identities=16% Similarity=0.350 Sum_probs=37.5
Q ss_pred HHHHHHHHhHHHHhhHHHHHHHHhhcccccCCCCCCCCCChhhhhhHHHHHHHHHHHHHHH
Q 036039 227 AYVQQLETSRIKLNQLEQELQRARSQVNFDPQLNLMNLSVPRAAIFDMEYARWLEDDQRHI 287 (508)
Q Consensus 227 aYvqqLE~sr~kL~qLeqel~rar~qg~~~~~~~~~~~~~sga~~F~~~Y~rWleEq~r~l 287 (508)
.+...|+. .|.+|+..++..+..|..-| .....|...+.+|-....+..
T Consensus 25 ~~~~~i~~---~l~~L~~~v~~L~~~g~W~G---------~A~~ay~~~~~~W~~~a~~l~ 73 (103)
T 4i0x_B 25 GFKEFVTE---NLDQLESRAQKLVQSGQWAG---------AAAAAYSQAHKEWMDAARELV 73 (103)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHTSSCH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHhcCCCeec---------hHHHHHHHHHHHHHHHHHHHH
Confidence 56777777 68999999999887775533 456789999999987665543
No 29
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=30.52 E-value=57 Score=32.18 Aligned_cols=83 Identities=17% Similarity=0.249 Sum_probs=48.0
Q ss_pred CCCccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHhhcccccCCCCCCCCCChhhhhhHHHHH
Q 036039 198 TSDRQLDAKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQRARSQVNFDPQLNLMNLSVPRAAIFDMEYA 277 (508)
Q Consensus 198 ~~~~~~d~k~~RRLAQNREaARkSRlRKKaYvqqLE~sr~kL~qLeqel~rar~qg~~~~~~~~~~~~~sga~~F~~~Y~ 277 (508)
+.=+..++.|.|||+ ||++.++|..|-| ..-.|.||-|+ -|.|+ ++ ..|.
T Consensus 16 ~kY~~v~p~~v~r~~--~~~~~~~~~~~~a----~k~~k~~LH~i---------~ga~~----------~~-----~~~~ 65 (253)
T 3frh_A 16 KKYRALCPDTVRRIL--TEEWGRHKSPKQT----VEAARTRLHGI---------CGAYV----------TP-----ESLK 65 (253)
T ss_dssp TTTTTBCHHHHHHHH--HHHHTTCCCHHHH----HHHHHHHHHHH---------HTTSC----------CH-----HHHH
T ss_pred ccccccCHHHHHHHH--HHHHHhcCCHHHH----HHHHHHHHHHH---------HHHhc----------CC-----ccHH
Confidence 345678899999999 4566666633211 11122333332 36775 21 6789
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHH
Q 036039 278 RWLEDDQRHISELRSGLNQHYSDGDLRIIVDAYISHYDEIFR 319 (508)
Q Consensus 278 rWleEq~r~l~ELRaAL~s~~sD~ELr~LVd~vlsHY~eyfr 319 (508)
+|+...+ ....+.+|..|.+- ..++-.|++.|.
T Consensus 66 ~~l~~~~--~~d~~~~l~~H~ST-------rerLp~ld~fY~ 98 (253)
T 3frh_A 66 AAAAALS--AGDVKKALSLHAST-------KERLAELDTLYD 98 (253)
T ss_dssp HHHHHHH--TTCHHHHHTTSHHH-------HHHGGGHHHHHH
T ss_pred HHHHHhc--cCCHHHHHhhCCCH-------HHHhhhHHHHHH
Confidence 9998877 23335777777552 334566666665
No 30
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=29.24 E-value=41 Score=27.35 Aligned_cols=21 Identities=38% Similarity=0.669 Sum_probs=18.7
Q ss_pred HHHHHhHHHHhhHHHHHHHHh
Q 036039 230 QQLETSRIKLNQLEQELQRAR 250 (508)
Q Consensus 230 qqLE~sr~kL~qLeqel~rar 250 (508)
|.||.+|-.+..||+|+.+-|
T Consensus 33 qeLe~Ck~sIrrLE~evn~Er 53 (72)
T 1k1f_A 33 QELERAKASIRRLEQEVNQER 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 569999999999999998877
No 31
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=27.07 E-value=1.1e+02 Score=25.69 Aligned_cols=27 Identities=19% Similarity=0.479 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhHHHHhhHHHHHHHHh
Q 036039 223 LRKKAYVQQLETSRIKLNQLEQELQRAR 250 (508)
Q Consensus 223 lRKKaYvqqLE~sr~kL~qLeqel~rar 250 (508)
||||. .++|+--.-.+..||.+|+|-+
T Consensus 45 LKkkl-~~el~~h~~ei~~le~~i~rhk 71 (84)
T 1gmj_A 45 LKKHK-ENEISHHAKEIERLQKEIERHK 71 (84)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 55554 5555555555666666666554
No 32
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=25.24 E-value=42 Score=26.92 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=20.4
Q ss_pred HHHHHHHHhHHHHhhHHHHHHHHhhcc
Q 036039 227 AYVQQLETSRIKLNQLEQELQRARSQV 253 (508)
Q Consensus 227 aYvqqLE~sr~kL~qLeqel~rar~qg 253 (508)
.||..|+. ++..|+.|++..|+|+
T Consensus 57 ~YI~~L~~---~~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 57 EYIQYMRR---KNHTHQQDIDDLKRQN 80 (80)
T ss_dssp HHHHHHHH---HHHHHHHHHHTHHHHC
T ss_pred HHHHHHHH---HHHHHHHHHHHHHhcC
Confidence 69999998 6888999999888763
No 33
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=25.14 E-value=51 Score=26.38 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=18.5
Q ss_pred HHHHHHHHHhHHHHhhHHHHHHHHh
Q 036039 226 KAYVQQLETSRIKLNQLEQELQRAR 250 (508)
Q Consensus 226 KaYvqqLE~sr~kL~qLeqel~rar 250 (508)
+.||+.||. +|.+||..|....
T Consensus 47 ~~~~~~Le~---rl~~le~~l~~~~ 68 (96)
T 1pyi_A 47 RSYVFFLED---RLAVMMRVLKEYG 68 (96)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHTT
T ss_pred HHHHHHHHH---HHHHHHHHHHHhC
Confidence 469999999 7999999998754
No 34
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=23.55 E-value=62 Score=25.35 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=18.7
Q ss_pred HHHHHHHHHhHHHHhhHHHHHHHHh
Q 036039 226 KAYVQQLETSRIKLNQLEQELQRAR 250 (508)
Q Consensus 226 KaYvqqLE~sr~kL~qLeqel~rar 250 (508)
+.||+.||. +|.+||..|....
T Consensus 44 ~~~~~~L~~---r~~~le~~l~~l~ 65 (89)
T 3coq_A 44 RAHLTEVES---RLERLEQLFLLIF 65 (89)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHC
T ss_pred HHHHHHHHH---HHHHHHHHHHHHc
Confidence 469999998 7999999998754
No 35
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=22.43 E-value=23 Score=36.46 Aligned_cols=16 Identities=50% Similarity=0.447 Sum_probs=7.5
Q ss_pred HHHhHHHHHHHHHHHH
Q 036039 211 LAQNREAARKSRLRKK 226 (508)
Q Consensus 211 LAQNREaARkSRlRKK 226 (508)
-|+-||||||-|-|||
T Consensus 375 aa~aR~aa~karer~~ 390 (390)
T 1s16_A 375 SAQRRMRAAKKVVRKK 390 (390)
T ss_dssp HHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhhcC
Confidence 3588999999999886
No 36
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=22.03 E-value=2.8e+02 Score=21.42 Aligned_cols=65 Identities=11% Similarity=0.118 Sum_probs=41.2
Q ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHhhcccccCCCCCCCCCChhhhhhHHHHHHHHHH
Q 036039 203 LDAKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQRARSQVNFDPQLNLMNLSVPRAAIFDMEYARWLED 282 (508)
Q Consensus 203 ~d~k~~RRLAQNREaARkSRlRKKaYvqqLE~sr~kL~qLeqel~rar~qg~~~~~~~~~~~~~sga~~F~~~Y~rWleE 282 (508)
.|+..++..|.. + +....+|+. .|.+|+.+++.... ...| .....|...|.+|...
T Consensus 6 v~~~~l~~~A~~--------~--~~~~~~l~~---~l~~L~~~~~~L~~---~W~G--------~a~~af~~~~~~~~~~ 61 (97)
T 2vs0_A 6 MSPEEIRAKSQS--------Y--GQGSDQIRQ---ILSDLTRAQGEIAA---NWEG--------QAFSRFEEQFQQLSPK 61 (97)
T ss_dssp SCHHHHHHHHHH--------H--HHHHHHHHH---HHHHHHHHHHHHHH---HSCS--------STTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHH--------H--HHHHHHHHH---HHHHHHHHHHHHhc---ccCc--------HHHHHHHHHHHHHHHH
Confidence 456667666632 1 244556666 57788888877652 2322 4457799999999887
Q ss_pred HHHHHHHHH
Q 036039 283 DQRHISELR 291 (508)
Q Consensus 283 q~r~l~ELR 291 (508)
..+....|.
T Consensus 62 ~~~~~~~L~ 70 (97)
T 2vs0_A 62 VEKFAQLLE 70 (97)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777665554
Done!